Citrus Sinensis ID: 001310

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100---
Protein Sequence
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHccccccHHHHcccccccEEEEHHHHHHHHHcccHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccEEEEEEcccccccEEEEEcccccccEEccccEEEEcccccccccccccccEEEEEccccccEEEEEccccEEEEEcccccEEEEcccccccEEEEEEcccccEEEEEEEccccEEEEEcccccEEEEEEEEEEEcccccccccccccccccccEEEEEEcccccEEEEEEccccEEEEEccccccccccEEEccccccEEEEEEcccccEEEEEcccccccEEEEEcccccEEEEcccccccEEEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEcccccccccEEEEEEcccccEEEEEEccccEEEEEccccEEEEEEccccccccccEEEEcccccEEEEEEccccEEEEEccccccccccccccccEEEEEEcccccEEEEEEccccEEEEcccccccccEEEEEcccEEcccccEEEEcccccEEEEEccccccEEEEEEEcccccEEEEEEcccEEEEEEEccccEEEEEEccccccEEEEEcccccEEEEcccccccccccEEEEEEcccccEEEEEEcccEEEEEccccEEEEEEccccccEEEEEEccccccEEEEEEccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEcccccccccccccccccEEEEEccccEEEEEEcccEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEEEccccEEcccccccccEEEEEEccccEEEEEEEccccccccEEEEEccccEEEEEEcccccEEEEccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccEEEHHHHHHHHHcccHHHHHHHHccccEcccccccHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHccccccHHHHHHHHHHHHHHHHHHHcccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccHccccccccccccHHHHccccccccccccccccccccccccccccccccEEEcccccccccccccccccccEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEccccEEEEEEcccccEEEEEEEEEEEccccccccHHHHcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEEEccccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEEccccccEEEEEEcccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEccccccccEEEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEccccccccccccEEEEEcccccEEEEEcccccEEEEEEEEccccEEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEEEEccccccccEEEEEEcccccEEEEEcccEEEEEEcccccEEEEEccccccEEEEEEccccccEEEEEccccEEEEEEcccccEEEEEccccccEEEEEEcccccEEEEcccccEEEEEEccccEEEEEccccccEEEEEEcccccEEEEccccEEEEEEcccEEEEEEcccccEEEEEcccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEcccccEEEccccccEEEEEEcccccEEEEEEEEccccccEEEEEccccEEEEEEcccccEcccccccccEEEEcccccEEEEccccc
Coil and Loop (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFtkvddnrystkIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEanpilqgklkfpsiKRQRLRRLINQSLNWQhvhcanpqpnpdintLFVDHVCqlqetdfsgqssesnalppqttqspsswnfsssmltdSAVSFVALslsdptnkavtmdrpedsdilsekspvrilneqastvtypgvslknipdyspksslkKEMFQsfgetsfsdfpKTVAQTLiegssspmsmdfhpVQHTLLLVGtnvgdtglwdvnsgqklFIRNFKVWDIGACSMLFKTAlvrdpgvsvnrvvwspdgsllgVAYSKHIVQLYAyhggsdarQQLEIdahvgnvndlafsapckqisvitcgddktikVWDAvtgsrtysfeghgapvyslcphakeniHFIFSISVDGKIKAWLYDSlgarvdydapglgctrmaysangrrlfscgtskegESFLVEWNESEGAIKRTYQglqlqhnsvsvvhfdtakdQILAAGDDHVIKIWDMNKVQLLTTidaggglpenpricfnknGTLLAVIANEnrikiletpesnsvdaagvlsdnlrklsvnpistvtgagiangsvsvnedpkedvkpeisveaenksevekplfarpsecqslllpskvkankisrltyNNGGQAIFALASNGVhlmwrwprndltlsteattkvpprlyqprhgpqfmvndttdsnsqeavpcfalskndaylfsaSGGVISLYIVMTFKTIltimppsptatslafnphdnnviaigmddstiLIYNARSSEVISKLEGHSKRVTGLVFSDALNILVssggdaqifvwdvdgwgiqtcrslqtpdgvmtlapsethiqfHKDQTRFLLVHETHLAIYEAEELTclkqwfpissvpisqatfscdcrmvftsfvdgtlsiheASNLEVQCRILStaylrpttshdkilcfcycsclhvyphaiaahplkptqfavgltngevyviepnepgdtwavlppdeivgdqptstsegdramdg
Flexible Loop (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSsftkvddnrysTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIeanpilqgklkFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLsdptnkavtmdrpedsdilsekspvrilneqastvtypgvslknipDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIsvitcgddktIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIletpesnsvdaAGVLSDNLRKLSVNPIStvtgagiangsvsvnedpkedVKPEisveaenksevekplfarpsecqslllpSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEivgdqptstsegdramdg
Low Complexity Region (SEG)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Disordered region (IsUnstruct)
******DLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQ*************************************************************************************************************************************FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET********AGVLSDNLRKLSVNPISTVTG*********************************************LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST*******************************AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL**********************
Disordered Region (DISOPRED)
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQE**********NALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSD***KA***********LSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA************************
Disordered Region (DISEMBL)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQET***********************NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV***********ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGD**************
Disordered Region (DISPRO)
**KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGD*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTSEGDRAMDG
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	1103	2.2.26 [Sep-21-2011]
Q0WV90	1120	Topless-related protein 1	yes	no	0.953	0.939	0.538	0.0
Q94AI7	1131	Protein TOPLESS OS=Arabid	no	no	0.974	0.950	0.533	0.0
Q27GK7	1135	Topless-related protein 4	no	no	0.961	0.934	0.494	0.0
Q9LRZ0	1131	Topless-related protein 2	no	no	0.950	0.926	0.462	0.0
Q84JM4	1108	Topless-related protein 3	no	no	0.955	0.951	0.462	0.0
Q00808	1356	Vegetative incompatibilit	yes	no	0.260	0.211	0.274	8e-19
Q8YRI1	1526	Uncharacterized WD repeat	no	no	0.487	0.352	0.220	1e-14
Q8YTC2	1258	Uncharacterized WD repeat	no	no	0.462	0.405	0.216	2e-13
Q8YV57	1683	Uncharacterized WD repeat	no	no	0.455	0.298	0.225	1e-11
P49695	742	Probable serine/threonine	no	no	0.230	0.342	0.248	2e-11

>sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3

 Score = 1180 bits (3052), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 609/1130 (53%), Positives = 779/1130 (68%), Gaps = 78/1130 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA++IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C+L               G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T SP     + W  S S +   AVS   ++L  P+ +A             +D P  D
Sbjct: 240  QPTPSPVPTPLAGWMSSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYPSGD 299

Query: 268  SDILSEKS-PVRILNEQASTV-----TYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD 321
            SD +S+++ P+ I +E +  V     T+PG           ++    + F++       D
Sbjct: 300  SDHVSKRTRPMGISDEVSLGVNMLPMTFPG-----------QAHGHNQTFKAP-----DD 343

Query: 322  FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIG 381
             PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+ 
Sbjct: 344  LPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLS 402

Query: 382  ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
             CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHV
Sbjct: 403  KCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHV 462

Query: 442  GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
            G VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI F
Sbjct: 463  GGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQF 522

Query: 502  IFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
            IFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWN
Sbjct: 523  IFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWN 582

Query: 562  ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
            ESEGA+KRTYQG      S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT IDA GG
Sbjct: 583  ESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGG 640

Query: 622  LPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTG 680
            L  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N I  V  
Sbjct: 641  LQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVER 700

Query: 681  AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKI 737
                     +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP  ++  KI
Sbjct: 701  PASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRVTKI 760

Query: 738  SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
            SRL + N G AI ALASN +HL+W+W RND   + +AT  +PP+ +QP  G   M ND  
Sbjct: 761  SRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASG-ILMTNDVA 819

Query: 798  DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857
            ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN
Sbjct: 820  ETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNN 879

Query: 858  VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
            +IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DG
Sbjct: 880  IIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDG 939

Query: 918  WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI- 976
            W  Q  + LQ P G  T + S+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW P+ 
Sbjct: 940  WEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVR 998

Query: 977  -SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC 1035
             S+ PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S+       
Sbjct: 999  ESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNS------ 1052

Query: 1036 YCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1085
                 +V+P  IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct: 1053 -----NVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses.
Arabidopsis thaliana (taxid: 3702)

>sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1

 Score = 1173 bits (3034), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1154 (53%), Positives = 788/1154 (68%), Gaps = 79/1154 (6%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA++IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T SP     + W  S S +   AVS  A++L  P+  A            ++D P  D
Sbjct: 240  QPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYPSAD 299

Query: 268  SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
            S+ +S+++ P+ I +E    V    +S      +S ++      F++       D PKTV
Sbjct: 300  SEHVSKRTRPMGISDEVNLGVNMLPMS------FSGQAHGHSPAFKAP-----DDLPKTV 348

Query: 327  AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
            A+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM 
Sbjct: 349  ARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMP 407

Query: 387  FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
             + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND
Sbjct: 408  LQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVND 467

Query: 447  LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
            ++FS P KQ+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS +
Sbjct: 468  ISFSTPNKQLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTA 527

Query: 507  VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
            +DGKIKAWLYD++G+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA
Sbjct: 528  LDGKIKAWLYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGA 587

Query: 567  IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
            +KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT ID  GGL  +P
Sbjct: 588  VKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASP 645

Query: 627  RICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPI-----STVTG 680
            RI FNK G+LLAV  NEN IKI+   +    +     +S    K ++N I     +  T 
Sbjct: 646  RIRFNKEGSLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATS 705

Query: 681  AGIANGSVSV------NEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSK 731
            AG A+ S +V      N D +   DVKP I+ E+ +KS++ K    + PS+C+SL LP  
Sbjct: 706  AGHADRSANVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPEN 765

Query: 732  VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF 791
            ++  KISRL + N G AI ALASN +HL+W+W RN+   + +AT  +PP+ +QP  G   
Sbjct: 766  LRVAKISRLIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASG-IL 824

Query: 792  MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF 851
            M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF
Sbjct: 825  MTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAF 884

Query: 852  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
            +P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ 
Sbjct: 885  HPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLC 944

Query: 912  VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK 971
            VW+ DGW  Q  + L  P G    APS+T +QFH+DQ  FL+VHET LAIYE  +L C+K
Sbjct: 945  VWNTDGWEKQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMK 1004

Query: 972  QWFPISSV-PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDK 1030
            QW    S+ PI+ ATFSCD ++V+ SF+D T+ +  ++NL ++CR+  +AYL  + S+  
Sbjct: 1005 QWAVRESLAPITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNS- 1063

Query: 1031 ILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVG 1088
                      +V+P  IAAHP +P  FAVGL++G V++ EP E    W V PP E     
Sbjct: 1064 ----------NVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSAS 1113

Query: 1089 DQPTSTSEGDRAMD 1102
              PT+ S G  A D
Sbjct: 1114 GAPTAPSVGASASD 1127

Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2

 Score = 1069 bits (2764), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 578/1170 (49%), Positives = 746/1170 (63%), Gaps = 109/1170 (9%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F ++ H LE+ES F+F+M++FED +  G+W+DVE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD  D AKA++IL K+LK F+  NEELFKE+  LLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L + R++E LSKY GD  SAR  M+ ELK++IEANP+ + KL+FPS+K  RLR LINQSL
Sbjct: 121  LTNFRENEQLSKY-GDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSA----VSFVALSLSDPTNKAVTM---DRPE----------- 266
            Q T +P + + +  M   S     VS   + L  P N AV+M   +RP            
Sbjct: 240  QPTPAPLTTSLAGWMPNPSVQHPTVSAGPIGLGAP-NSAVSMLKRERPRSPPTNSLSMDY 298

Query: 267  ---DSD-ILSEKSPVRI------LNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
               DS+ +L    P  I      L      VTYPG                    QS   
Sbjct: 299  QTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPG--------------------QSHAH 338

Query: 317  TSFS--DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
             ++S  D PK V++ L +GS+   SMDFHPVQ T+LLVGTN+GD  +W+V S +KL  R+
Sbjct: 339  ATYSTDDLPKNVSRILSQGSAI-KSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRS 397

Query: 375  FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
            FKVWD+  C++  + +L  +   +VNRVVWSPDG LLGVAYSKHIV +Y+YHGG D R  
Sbjct: 398  FKVWDLATCTVNLQASLASEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNH 457

Query: 435  LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
            LEIDAH GNVNDLAFS P +Q+ V+TCG+DKTIKVWDAVTG++ ++FEGH APVYS+CPH
Sbjct: 458  LEIDAHAGNVNDLAFSQPNQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPH 517

Query: 495  AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
             KENI FIFS +VDGKIKAWLYD++G+RVDYDAPG  CT MAY A+G RLFSCGTSKEGE
Sbjct: 518  QKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGE 577

Query: 555  SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
            SF+VEWNESEGA+KRTY GL  +  SV VV FDT K++ L AGD+  +K WDM+ V LL+
Sbjct: 578  SFIVEWNESEGAVKRTYLGLGKR--SVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLS 635

Query: 615  TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES----NSVDAAGVLSDNLRKL 670
            +  A GGLP +P +  NK GTLLAV   +N IKIL   E     +S+   G+ S      
Sbjct: 636  STAAEGGLPSSPCLRINKEGTLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPG 695

Query: 671  SV--NPI-------STVTGAGIANGSVS--------VNEDPKE--DVKPEISVEAENKSE 711
            SV   PI       ++ TG  ++ G  S        +N D +   DVKP I+ +AE    
Sbjct: 696  SVAKGPIVGTFGTPNSSTGMSLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKT 755

Query: 712  VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS 771
             +    +  S+ ++L LP  +   ++ +L Y N G AI ALA N  H +W+W +++  L 
Sbjct: 756  WKLTEISERSQLRTLRLPDTLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLL 815

Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM 831
             +A + VPP+L+QP  G   M NDT + N ++ VPCFALSKND+Y+ SASGG ISL+ +M
Sbjct: 816  GKANSNVPPQLWQPSSG-VLMTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMM 874

Query: 832  TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG 891
            TFKT+ T M P P ATSLAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH KRVTG
Sbjct: 875  TFKTMTTFMAPPPAATSLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTG 934

Query: 892  LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF 951
            L FS+ LN+LVSSG D+Q+ VW +DGW  Q  + +Q P G      + T +QFH+DQ   
Sbjct: 935  LAFSNVLNVLVSSGADSQLCVWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHV 994

Query: 952  LLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010
            L+VH + LAIYEA +L  +KQW P  SS  ++ A +SCD + ++ +F DG++SI  A+ L
Sbjct: 995  LVVHASQLAIYEAPKLENMKQWIPKESSGSVTDAVYSCDSQSIYAAFDDGSVSILTATTL 1054

Query: 1011 EVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070
            +++CRI   +YL    S              VYP  +AAHP +P QFAVGLT+G V+VIE
Sbjct: 1055 QLKCRIGPNSYLPSNPSS------------RVYPATVAAHPSEPNQFAVGLTDGGVHVIE 1102

Query: 1071 PNEPGDTWAV-LPPDEIVGDQPTSTSEGDR 1099
            P  P   W +  PP+   G   +S    D+
Sbjct: 1103 PPGPEGKWGISAPPENGAGPSVSSAPGSDQ 1132

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 523/1131 (46%), Positives = 724/1131 (64%), Gaps = 83/1131 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+  L G+W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA  NEEL+KE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M  ELK++IEANP+ + KL FPS K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
            NWQH  C NP+PNPDI TLF+DH C         ++     LP      PS++       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFLDHSCSPSN---GARALTPVNLPVAAVARPSNFVPLGVHG 236

Query: 234  -NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGV 292
              F S+       + +A  +++P   +        S +++  SP  +   Q + + +P  
Sbjct: 237  GPFQSNPAPAPNANALAGWMANPNPSSSV-----PSGVVA-ASPFPMQPSQVNELKHPRA 290

Query: 293  SLKNIPDYSPKSSLKKEMFQ----------------SFGETSFSDFPKTVAQTLIEGSSS 336
               ++     +S+  +++ +                S    S  D P+ V  T+ +GS  
Sbjct: 291  PSNSLGLMDYQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV 350

Query: 337  PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
             +SMDFHP  HTLL VG + G+  LW+V S +K+    FK+W++ ACS++F+ ++V++P 
Sbjct: 351  -ISMDFHPSHHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPS 409

Query: 397  VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI 456
            +SV RV WSPDG+LLGV+++KH++ +YAY  GSD RQ LEIDAHVG VNDLAF+ P KQ+
Sbjct: 410  ISVTRVAWSPDGNLLGVSFTKHLIHVYAYQ-GSDLRQHLEIDAHVGCVNDLAFAHPNKQM 468

Query: 457  SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY 516
             V+TCGDDK IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLY
Sbjct: 469  CVVTCGDDKLIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLY 527

Query: 517  DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
            D++G+RVDYDAPG  CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G   
Sbjct: 528  DNVGSRVDYDAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLG--F 585

Query: 577  QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
            +  S  VV FDT +++ LA G+D+ IK W+M+   LLT ++A GGLP  PR+ FNK+G L
Sbjct: 586  RKKSAGVVQFDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNL 645

Query: 637  LAV---------IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS 687
            LAV         +AN + ++ L   E+ S +A+    D   K+S + +++     I    
Sbjct: 646  LAVTTADNGFKILANTDGLRTLRAFEARSFEASKASID--MKVSTSAMASSISPAIGKIE 703

Query: 688  VSVNEDPKEDVKPEISVEAENKS----------EVEKPL----FARPSECQSLLLP-SKV 732
                  P         +EA +++          +  KPL       P++C+ + +P SK 
Sbjct: 704  HMDAGSPARPTPIPNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKD 763

Query: 733  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792
              +K++RL Y N G  + AL SNGV  +W+W RN+   + +AT  V P+ +QP  G   M
Sbjct: 764  SVSKVARLLYTNSGVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSG-LLM 822

Query: 793  VNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852
             ND  + N + +VPC ALSKND+Y+ SA GG +SL+ +MTFK + T MPP P +T LAF+
Sbjct: 823  ANDVPE-NPEGSVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFH 881

Query: 853  PHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV 912
            P DNN+IAIGM+DS+I IYN R  EV +KL+GH K +TGL FS ALNILVSSG DAQ+F 
Sbjct: 882  PQDNNIIAIGMEDSSIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFF 941

Query: 913  WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ 972
            W  D W  +   ++Q P G   +   +T +QFH DQ + L+ HET LAIY+A ++ C+ +
Sbjct: 942  WTADSWEKKKSSAIQLPPGKAPVG--DTRVQFHNDQIQLLVSHETQLAIYDASKMECIHK 999

Query: 973  WFPISSV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL-RPTTSHD 1029
            W P  ++  PI+ A++SC+ ++V+ SF DG +++ +A +L ++CRI  +AY+ +PT +  
Sbjct: 1000 WVPQEALSSPITSASYSCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYMPQPTPNSA 1059

Query: 1030 KILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAV 1080
             I           +P  I AHP +P Q AVGL++G V VIEP+E    W V
Sbjct: 1060 PI-----------FPQVITAHPQEPNQLAVGLSDGSVKVIEPSELSRRWGV 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1

 Score =  998 bits (2579), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 527/1140 (46%), Positives = 713/1140 (62%), Gaps = 86/1140 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F ES H LE+ES F+F+ K+F++ +L G+W+DVE YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD  + AKA+ IL +DL+ F+  NEEL+KE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L + R++E LSKY GD  +AR  M+ ELK++IEANP+ + KL FP+++  RLR LINQSL
Sbjct: 121  LQNFRENEQLSKY-GDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSW------- 233
            NWQH  C NP+PNPDI TLF DH C L     +  +      P  T   P+++       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQ---PVTTLTKPAAYPSLGPHV 236

Query: 234  ------------NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILN 281
                          +S M   S  S V  ++  P      M +P++         + IL 
Sbjct: 237  PFPPGPAAANAGALASWMAAASGASAVQAAVVTP----ALMPQPQNQ--------MSILK 284

Query: 282  EQASTVTYPGVSLKNIPDYS------PKSSLKKEMFQSFGET---SFSDFPKTVAQTLIE 332
               +    PG+     PD+       P  S+++  + +  +    S  D P   A  L +
Sbjct: 285  RPRTPPATPGIVDYQNPDHELMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQ 344

Query: 333  GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
            GS+   SM+F+P+Q+TLLLVG+  G+  LW++ + ++L  R FK+WD+  CS  F+  + 
Sbjct: 345  GSTV-TSMEFYPMQNTLLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIA 403

Query: 393  RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
            ++  +SV RV WSPDG+ +GVA++KH++QLYA+ G +D RQ  EIDAHVG VNDLAF+ P
Sbjct: 404  KETPISVTRVAWSPDGNFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANP 463

Query: 453  CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK 512
             +Q+ VITCGDDK IKVWD V+G + ++FEGH APVYS+CPH KENI FIFS ++DGKIK
Sbjct: 464  NRQLCVITCGDDKLIKVWD-VSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIK 522

Query: 513  AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
            AWLYD+LG+RVDYDAPG  CTRM YSA+G RLFSCGTSK+G+SFLVEWNESEG+IKRTY+
Sbjct: 523  AWLYDNLGSRVDYDAPGKWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYK 582

Query: 573  GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK 632
              + Q     VV FDT+K+  LA G+D  IK WDMN + +LT+ DA GGLP  P + FNK
Sbjct: 583  --EFQKKLAGVVQFDTSKNHFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNK 640

Query: 633  NGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN 691
            +G LLAV   +N  KIL  P    S+ A    +    +  V+    V GA +A+ +  V 
Sbjct: 641  DGNLLAVTTADNGFKILANPAGFRSLRAMETPASETMRTPVD-FKAVPGAPVASVNCKVE 699

Query: 692  E-------------DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV-KANKI 737
                          DP    K  I    +     +      PS+C    LP     + K+
Sbjct: 700  RGSPVRHSQMLNGVDPS---KSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKV 756

Query: 738  SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
             +L Y N G  I AL SNG+  +W+W  N+   S +AT  V P+ +QP  G   M ND +
Sbjct: 757  VQLLYTNSGAGILALGSNGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSG-LLMTNDVS 815

Query: 798  DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN 857
              N + A PC ALSKND+Y+ SA+GG +SL+ +MTFK + T MPP P +T LAF+P DNN
Sbjct: 816  GVNLENAAPCIALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNN 875

Query: 858  VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG 917
            VIAIGM+DSTI IYN R  EV SKL+GH KR+TGL FS ALNILVSSG DAQI  W +D 
Sbjct: 876  VIAIGMEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDT 935

Query: 918  WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS 977
            W  +   ++Q P G    A  +T +QFH DQ R L+VHET LA+++A ++ C++QW P  
Sbjct: 936  WEKRKSVAIQMPAG--KAANGDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQD 993

Query: 978  SV--PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC 1035
            S+  PIS A ++C+ ++++T+F DG + + +A +L ++CRI  +AYL P  +        
Sbjct: 994  SLSAPISSAVYACNSQLIYTTFRDGNIGVFDADSLRLRCRISPSAYL-PQGNQG------ 1046

Query: 1036 YCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQPTSTS 1095
                  + P  +AAHP  P QFAVGL +G V ++EP E    W ++PP E + + P++TS
Sbjct: 1047 ------LSPLVVAAHPQDPNQFAVGLNDGSVKMMEPTEGEGKWGMIPPSEAI-NSPSTTS 1099

Transcriptional corepressor. Negative regulator of jasmonate responses.

Arabidopsis thaliana (taxid: 3702)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 96.7 bits (239), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 91/331 (27%), Positives = 146/331 (44%), Gaps = 44/331 (13%)

Query: 325  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI--GA 382
            T  QTL    SS +S+ F P       V +  GD              +  K+WD   G 
Sbjct: 958  TCTQTLEGHGSSVLSVAFSPDGQR---VASGSGD--------------KTIKIWDTASGT 1000

Query: 383  CSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG 442
            C     T  +   G SV  V +SPDG  +        ++++    G+   Q LE   H G
Sbjct: 1001 C-----TQTLEGHGGSVWSVAFSPDGQRVASGSDDKTIKIWDTASGT-CTQTLE--GHGG 1052

Query: 443  NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIH 500
             V  + FS   ++++  +  DD TIK+WDAV+G+ T + EGHG  V+S+   P  +    
Sbjct: 1053 WVQSVVFSPDGQRVA--SGSDDHTIKIWDAVSGTCTQTLEGHGDSVWSVAFSPDGQR--- 1107

Query: 501  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
             + S S+DG IK W   S       +  G     +A+S +G+R+ S       +  +  W
Sbjct: 1108 -VASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSI----DGTIKIW 1162

Query: 561  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
            + + G   +T +G       V  V F     ++ +   D  IKIWD        T++  G
Sbjct: 1163 DAASGTCTQTLEG---HGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTLEGHG 1219

Query: 621  GLPENPRICFNKNGTLLAVIANENRIKILET 651
            G  ++  + F+ +G  +A  +++N IKI +T
Sbjct: 1220 GWVQS--VAFSPDGQRVASGSSDNTIKIWDT 1248

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

>sp|Q8YRI1|YY46_NOSS1 Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr3466 PE=4 SV=1

 Score = 83.2 bits (204), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 138/626 (22%), Positives = 244/626 (38%), Gaps = 88/626 (14%)

Query: 349  LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG 408
            +L  G++     LWD++SGQ              C   FK    R     V  VV+SP+ 
Sbjct: 920  MLASGSDDQTVRLWDISSGQ--------------CLKTFKGHTSR-----VRSVVFSPNS 960

Query: 409  SLLGVAYSKHIVQLYAYHGGSDARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI 467
             +L    S   V+L+    G    + L I   H G V  +AF+     ++  T   D+T+
Sbjct: 961  LMLASGSSDQTVRLWDISSG----ECLYIFQGHTGWVYSVAFNLDGSMLA--TGSGDQTV 1014

Query: 468  KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA 527
            ++WD  +    Y F+GH + V S+   +   +  + S S D  ++ W  D       Y  
Sbjct: 1015 RLWDISSSQCFYIFQGHTSCVRSVVFSSDGAM--LASGSDDQTVRLW--DISSGNCLYTL 1070

Query: 528  PG-LGCTR-MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
             G   C R + +S +G  L S G     +  +  W+ S G    T QG     + V  + 
Sbjct: 1071 QGHTSCVRSVVFSPDGAMLASGGD----DQIVRLWDISSGNCLYTLQGYT---SWVRFLV 1123

Query: 586  FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
            F      +     D ++++WD++  + L T+   G       + F+ +G  LA  + +  
Sbjct: 1124 FSPNGVTLANGSSDQIVRLWDISSKKCLYTLQ--GHTNWVNAVAFSPDGATLASGSGDQT 1181

Query: 646  IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV------- 698
            +++ +   S  +      +  +  +  NP  +   +G ++ +V + E             
Sbjct: 1182 VRLWDISSSKCLYILQGHTSWVNSVVFNPDGSTLASGSSDQTVRLWEINSSKCLCTFQGH 1241

Query: 699  ---------KPEISVEAENKSEVEKPLF-ARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
                      P+ S+ A   S+    L+    S+C   L   +   N ++ + +N  G  
Sbjct: 1242 TSWVNSVVFNPDGSMLASGSSDKTVRLWDISSSKC---LHTFQGHTNWVNSVAFNPDGSM 1298

Query: 749  IFALASNGVHLMWR---------------WPRN-----DLTLSTEATTKVPPRLYQPRHG 788
            + + + +    +W                W  +     D T+    +     RL+    G
Sbjct: 1299 LASGSGDQTVRLWEISSSKCLHTFQGHTSWVSSVTFSPDGTMLASGSDDQTVRLWSISSG 1358

Query: 789  PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTAT 847
                    T       V     S + A L S SG   + L+ + + K + T+   +    
Sbjct: 1359 ECLY----TFLGHTNWVGSVIFSPDGAILASGSGDQTVRLWSISSGKCLYTLQGHNNWVG 1414

Query: 848  SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
            S+ F+P D  ++A G DD T+ ++N  S E +  L GH   V  + FS    IL S   D
Sbjct: 1415 SIVFSP-DGTLLASGSDDQTVRLWNISSGECLYTLHGHINSVRSVAFSSDGLILASGSDD 1473

Query: 908  AQIFVWDVD-GWGIQTCRSLQTPDGV 932
              I +WDV  G  I+T +S +  +G+
Sbjct: 1474 ETIKLWDVKTGECIKTLKSEKIYEGM 1499

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1

 Score = 79.0 bits (193), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 118/545 (21%), Positives = 224/545 (41%), Gaps = 35/545 (6%)

Query: 374  NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
            + +VW++ +  +L    + R     V  VV+SPDG +L    +   V+L++   G   + 
Sbjct: 665  HVRVWEVKSGKLLL---ICRGHSNWVRFVVFSPDGEILASCGADENVKLWSVRDGVCIK- 720

Query: 434  QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
               +  H   V  +AF    + ++  +   DKTIK+WD   G+   +  GH   V   C 
Sbjct: 721  --TLTGHEHEVFSVAFHPDGETLA--SASGDKTIKLWDIQDGTCLQTLTGHTDWVR--CV 774

Query: 494  HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-MAYSANGRRLFSCGTSKE 552
                + + + S + D  IK W   S G  +       G  R +A+SA+G+ L     S  
Sbjct: 775  AFSPDGNTLASSAADHTIKLWDV-SQGKCLRTLKSHTGWVRSVAFSADGQTL----ASGS 829

Query: 553  GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
            G+  +  WN   G   +TY G     NSV  + +      +++   D  IK+WD      
Sbjct: 830  GDRTIKIWNYHTGECLKTYIG---HTNSVYSIAYSPDSKILVSGSGDRTIKLWDCQTHIC 886

Query: 613  LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV 672
            + T+   G   E   + F+ +G  LA ++ +  +++        + A    +D    ++ 
Sbjct: 887  IKTLH--GHTNEVCSVAFSPDGQTLACVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVAF 944

Query: 673  NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV 732
            +P   +  +G  + +V + +         +    E  ++    +   P + Q+L   S  
Sbjct: 945  SPDRQILASGSNDKTVKLWDWQTGKYISSL----EGHTDFIYGIAFSP-DSQTLASASTD 999

Query: 733  KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFM 792
             + ++  ++     Q I    ++ V+ +   P+  +  +  A   V  +L+    G    
Sbjct: 1000 SSVRLWNISTGQCFQ-ILLEHTDWVYAVVFHPQGKIIATGSADCTV--KLWNISTGQCL- 1055

Query: 793  VNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIVMTFKTILTIMPPSPTATSLAF 851
                T S   + +   A S +   L SAS    + L+   T + +  +   S    S  F
Sbjct: 1056 ---KTLSEHSDKILGMAWSPDGQLLASASADQSVRLWDCCTGRCVGILRGHSNRVYSAIF 1112

Query: 852  NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
            +P +  +IA    D T+ I++ +  + +  L GH+  V  + FS    IL S+  D  + 
Sbjct: 1113 SP-NGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSPDGKILASASHDQTVR 1171

Query: 912  VWDVD 916
            +WDV+
Sbjct: 1172 IWDVN 1176

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1

 Score = 73.2 bits (178), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 142/630 (22%), Positives = 254/630 (40%), Gaps = 128/630 (20%)

Query: 398  SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +V  V +SPDG  +    S   ++L+    G+  +    I  H   VN++ FS   K ++
Sbjct: 1115 AVYSVSFSPDGQTIASGGSDKTIKLWQTSDGTLLK---TITGHEQTVNNVYFSPDGKNLA 1171

Query: 458  VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAW- 514
              +   D +IK+WD  +G    +  GH A V ++   P  +     I + S D  +K W 
Sbjct: 1172 --SASSDHSIKLWDTTSGQLLMTLTGHSAGVITVRFSPDGQT----IAAGSEDKTVKLWH 1225

Query: 515  -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569
                 L  +L    D+         +++S +G+ L S    K     +  W  ++G + +
Sbjct: 1226 RQDGKLLKTLNGHQDW------VNSLSFSPDGKTLASASADKT----IKLWRIADGKLVK 1275

Query: 570  TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC 629
            T +G    ++SV  V+F +    I +A  D+ IK+W+ + ++L T     GG+     + 
Sbjct: 1276 TLKG---HNDSVWDVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYA---VN 1329

Query: 630  FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI---STVTGAGIANG 686
            F  +  ++A  + +N I++ + P  + ++   VL+ N    +V+ +   S +  AG A+G
Sbjct: 1330 FLPDSNIIASASLDNTIRLWQRPLISPLE---VLAGNSGVYAVSFLHDGSIIATAG-ADG 1385

Query: 687  SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL--LPSKVKANKISRLTYNN 744
            ++ +                              S+  SLL  LP               
Sbjct: 1386 NIQLWH----------------------------SQDGSLLKTLP--------------- 1402

Query: 745  GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA 804
            G +AI+ ++          P+ DL  S  A   V  ++++ R G         D+     
Sbjct: 1403 GNKAIYGISFT--------PQGDLIASANADKTV--KIWRVRDGKALKTLIGHDNE---- 1448

Query: 805  VPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863
            V     S +   L SAS    + L+ V   K   T+   +     ++F+P D  +IA   
Sbjct: 1449 VNKVNFSPDGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP-DGKIIASAS 1507

Query: 864  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV-DGWGIQT 922
             D TI ++++ S  +I  L  H+  V  + F+   ++L S+  D  + +W   DG  + T
Sbjct: 1508 ADKTIRLWDSFSGNLIKSLPAHNDLVYSVNFNPDGSMLASTSADKTVKLWRSHDGHLLHT 1567

Query: 923  --------CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF 974
                      S  +PDG    + SE       D+T  +   + HL       LT L    
Sbjct: 1568 FSGHSNVVYSSSFSPDGRYIASASE-------DKTVKIWQIDGHL-------LTTL---- 1609

Query: 975  PISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
            P     +  A FS D + + +  +D T  I
Sbjct: 1610 PQHQAGVMSAIFSPDGKTLISGSLDTTTKI 1639

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P49695|PKWA_THECU Probable serine/threonine-protein kinase PkwA OS=Thermomonospora curvata GN=pkwA PE=3 SV=1

 Score = 72.0 bits (175), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 117/274 (42%), Gaps = 20/274 (7%)

Query: 375 FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
             VWD+ +   L       D    V  V +SPDG+LL        V+L+     + A ++
Sbjct: 483 IHVWDVASGDELHTLEGHTD---WVRAVAFSPDGALLASGSDDATVRLWDV---AAAEER 536

Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
              + H   V D+AFS     ++  +   D T ++W+  TG+     +GH   VY++   
Sbjct: 537 AVFEGHTHYVLDIAFSPDGSMVA--SGSRDGTARLWNVATGTEHAVLKGHTDYVYAVA-- 592

Query: 495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
              +   + S S DG I+ W   +   R    AP      +A+S +G  L         +
Sbjct: 593 FSPDGSMVASGSRDGTIRLWDVATGKERDVLQAPAENVVSLAFSPDGSMLVHG-----SD 647

Query: 555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
           S +  W+ + G    T++G     + V  V F      + +  DD  I++WD+   +  T
Sbjct: 648 STVHLWDVASGEALHTFEG---HTDWVRAVAFSPDGALLASGSDDRTIRLWDVAAQEEHT 704

Query: 615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
           T++ G   P +  + F+  GT LA  + +  I+I
Sbjct: 705 TLE-GHTEPVH-SVAFHPEGTTLASASEDGTIRI 736

May play a regulatory role during the complex growth cycle and in secondary metabolite production.

Thermomonospora curvata (taxid: 2020)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	1103
224141931	1109	predicted protein [Populus trichocarpa]	0.965	0.960	0.579	0.0
356550630	1132	PREDICTED: topless-related protein 1-lik	0.949	0.924	0.550	0.0
357455303	1112	WD repeat-containing protein, putative [	0.950	0.942	0.551	0.0
357455301	1134	WD repeat-containing protein, putative [	0.950	0.924	0.546	0.0
357455305	1149	WD repeat-containing protein, putative [	0.950	0.912	0.546	0.0
356526242	1133	PREDICTED: protein TOPLESS-like [Glycine	0.948	0.923	0.546	0.0
357458875	1138	WD repeat-containing protein, putative [	0.951	0.922	0.547	0.0
356554802	1136	PREDICTED: topless-related protein 1-lik	0.960	0.932	0.545	0.0
24461849	1127	CTV.2 [Citrus trifoliata]	0.945	0.925	0.547	0.0
297839887	1120	hypothetical protein ARALYDRAFT_895943 [	0.947	0.933	0.541	0.0

>gi|224141931|ref|XP_002324314.1| predicted protein [Populus trichocarpa] gi|222865748|gb|EEF02879.1| predicted protein [Populus trichocarpa]

 Score = 1213 bits (3138), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 646/1114 (57%), Positives = 784/1114 (70%), Gaps = 49/1114 (4%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            M+ L KDLV LI QFL+EEGF E+A MLERES +YF MKFFEDMI  G W++ E+YLS F
Sbjct: 1    MAALCKDLVLLISQFLDEEGFKETARMLERESGYYFSMKFFEDMIRSGNWDEAERYLSCF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TK+DDNRYSTKIYFEIRKQ F E LD  + +KAL+IL KDLK FAP NEEL KE+  LLT
Sbjct: 61   TKLDDNRYSTKIYFEIRKQKFLEVLDNDERSKALDILMKDLKAFAPDNEELLKEMTLLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++IRDHE LS  Y DA SARK MM+ELK++IEANP+L+ KL+FP+I   RLRRLINQSL
Sbjct: 121  LNNIRDHESLS-MYSDAESARKVMMVELKKVIEANPLLRDKLEFPNIANHRLRRLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQETD---FSGQSSESNALPPQTTQ----SPSSW 233
            NWQH+HCA PQPNPDI TLFVDH+C    +D   FS  +S+SN LP QTT     + S+ 
Sbjct: 180  NWQHMHCAYPQPNPDIRTLFVDHICVPIPSDDHLFSA-ASDSNPLPSQTTSMLVSTSSAS 238

Query: 234  NFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILS-------EKSPVRILNEQAST 286
            N +SS    S++S  ALSL  PTN    +   E   +LS         + + +L E  +T
Sbjct: 239  NSTSSSEAHSSISSEALSLGVPTNIGSFIVVIEKKLLLSLTIYSMFVAAMIEVL-EDNTT 297

Query: 287  VTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS-----DFPKTVAQTLIEGSSSPMSMD 341
            V   G+    I +    S+    +F  F     S     D PK V + L EGSS P SMD
Sbjct: 298  VNDSGIPKNRIVNLKRPSNEASLIFHFFLLKHCSVNISDDLPKNVFRILNEGSS-PTSMD 356

Query: 342  FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR 401
            FHP + T+LLVGT VGD GLW+V+SG+ L  RNFKVWDI ACSM+FK  L++DP VSVNR
Sbjct: 357  FHPEKQTVLLVGTTVGDIGLWEVSSGESLLSRNFKVWDIAACSMMFKATLLKDPSVSVNR 416

Query: 402  VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
            V WSP+G L GVAYSKH+VQ+Y+Y+   DARQQLEIDAHVG VNDL FSAP KQ+ VITC
Sbjct: 417  VAWSPEGGLFGVAYSKHLVQIYSYNEAKDARQQLEIDAHVGGVNDLTFSAPEKQLLVITC 476

Query: 462  GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA 521
            GDDK +K WDA  G + Y+FEGH APVYSLCP++K N+HF+F+ SV+G IK WLYD+LGA
Sbjct: 477  GDDKIVKAWDATDGVKMYTFEGHDAPVYSLCPYSKGNVHFVFATSVNGNIKVWLYDNLGA 536

Query: 522  RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV 581
            RVDYDAPGLGCT MAYS + RRLFSCGTS  GESFLVEW++SEGAIKRTY G  LQ NS 
Sbjct: 537  RVDYDAPGLGCTSMAYSGD-RRLFSCGTSGSGESFLVEWDDSEGAIKRTYLG--LQKNSS 593

Query: 582  SVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA 641
            SVV FD  K+Q+LAAGD+HVIKIWDMNK++L TTIDA GGLP NP + FNK GTLLAV A
Sbjct: 594  SVVQFDIMKNQVLAAGDEHVIKIWDMNKIELFTTIDAEGGLPANPCVRFNKEGTLLAVSA 653

Query: 642  NENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS------VNED 693
            N+N+IKIL    S  +       L D+ R +S   IS    A  A+ +V+      +   
Sbjct: 654  NDNKIKILAKDGSLQSLHTTENCLDDDFRLVS-EAISKGACAQDADEAVAKQCFNLLQNG 712

Query: 694  PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA 753
              + VK +I+ +              PS+CQ L LPS +KANKISRL YNN G +I AL 
Sbjct: 713  NLKAVKSKITGKDTKSKSGRLIELNSPSQCQILRLPSHMKANKISRLIYNNAGNSILALT 772

Query: 754  SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813
            SN  HL W+WP+ND  LS  A  KV P+L+QPR     M ND T SN +E VPCFALS+N
Sbjct: 773  SNATHLYWKWPQNDFDLSDTAAAKVSPQLWQPRSYSGLMTNDLTGSNPEETVPCFALSRN 832

Query: 814  DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA 873
            D+YL S+SGG ISLY ++ FKT+L+IM P P AT +AF+P DNN++AIG D+STILIYN 
Sbjct: 833  DSYLMSSSGGRISLYNLLKFKTMLSIMQPPPAATCIAFHPQDNNILAIGRDNSTILIYNV 892

Query: 874  RSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM 933
            RS++VI+ LEGHSKRV+GL FS+ LN+LVSSG DAQIFVW+V+GW  Q    LQ PDG +
Sbjct: 893  RSAKVITILEGHSKRVSGLAFSNDLNLLVSSGADAQIFVWNVEGWYKQRSTFLQIPDGRI 952

Query: 934  TLAPS-ETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCR 991
              + S +THIQFH++QT FL VHETHLAIYEA +L C+KQW P   + PIS ATFSCD +
Sbjct: 953  PFSLSTDTHIQFHQNQTEFLSVHETHLAIYEARKLECVKQWIPGDFATPISHATFSCDGQ 1012

Query: 992  MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHP 1051
            MV+ SF+DG +SI +AS+ ++ C+I  TAYL PT+S            L VYP AIAAHP
Sbjct: 1013 MVYASFLDGLVSIFDASDFQLYCQINPTAYLFPTSS------------LGVYPIAIAAHP 1060

Query: 1052 LKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1085
             +P QFAVGLT+G V V EP      W++L  DE
Sbjct: 1061 QEPNQFAVGLTDGGVIVFEPPISAGKWSMLTADE 1094

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356550630|ref|XP_003543688.1| PREDICTED: topless-related protein 1-like [Glycine max]

 Score = 1211 bits (3133), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 633/1149 (55%), Positives = 787/1149 (68%), Gaps = 102/1149 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGSLPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
            Q T +P     + W  + + +   AVS  A+ L  P+  A            ++D P  D
Sbjct: 240  QPTPAPVPTPLAGWMSNPTTVAHPAVSGGAIGLGAPSIPAALKHPRTPPTNPSVDYPSGD 299

Query: 268  SDILSEKS-PVRILNE-----QASTVTYPGVSLK---NIPDYSPKSSLKKEMFQSFGETS 318
            SD +S+++ P+ + +E        + T+PG       N PD                   
Sbjct: 300  SDHVSKRTRPIGMSDEVNLPVNVLSATFPGHGHGQAFNAPD------------------- 340

Query: 319  FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW 378
              D PKT  ++L +GSS PMSMDFHPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVW
Sbjct: 341  --DLPKTAMRSLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVW 397

Query: 379  DIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID 438
            D+ ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG D  Q LEID
Sbjct: 398  DLSACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDDVGQHLEID 457

Query: 439  AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN 498
            AHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KEN
Sbjct: 458  AHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSICPHYKEN 517

Query: 499  IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV 558
            I FIFS ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSKEGES +V
Sbjct: 518  IQFIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKEGESSIV 577

Query: 559  EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA 618
            EWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA
Sbjct: 578  EWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDA 635

Query: 619  GGGLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKL 670
             GGLP +PRI FNK+G LLAV ANEN IKIL   +         NS+      S+ + K 
Sbjct: 636  DGGLPASPRIRFNKDGALLAVSANENGIKILANADGIRLLRTLENSLYDTSRTSEAMTKP 695

Query: 671  SVNPISTVTG----------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLF 717
            ++NPIS              A       ++N D +   DVKP IS E+ +KS++ K    
Sbjct: 696  TINPISAAAAAATSAALAERASSVVAITAMNGDARNLGDVKPRISEESNDKSKIWKLTEI 755

Query: 718  ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK 777
              PS+C+SL LP  V+ NKISRL Y N G AI ALASN +HL+W+W RND   + +AT  
Sbjct: 756  NEPSQCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTGKATAS 815

Query: 778  VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL 837
            V P+L+QP  G   M ND TD+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ 
Sbjct: 816  VQPQLWQPSSG-ILMTNDITDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMT 874

Query: 838  TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA 897
            T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  
Sbjct: 875  TFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHV 934

Query: 898  LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET 957
            LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHET
Sbjct: 935  LNVLVSSGADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHET 994

Query: 958  HLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
             LAIYEA +L CLKQWFP  SS PIS ATFSCD ++++ SF+D T+ +   SNL ++CRI
Sbjct: 995  QLAIYEATKLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVLSVSNLRLRCRI 1054

Query: 1017 LSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076
              +AYL  + S +            V P  IAAHP +P QFAVGL++G V+V EP+E   
Sbjct: 1055 NPSAYLSASVSSN------------VQPLVIAAHPQEPNQFAVGLSDGGVHVFEPHESEG 1102

Query: 1077 TWAVLPPDE 1085
             W V PP E
Sbjct: 1103 KWGVPPPIE 1111

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455303|ref|XP_003597932.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486980|gb|AES68183.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1191 bits (3081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1128 (55%), Positives = 772/1128 (68%), Gaps = 80/1128 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKS-PVRILNE- 282
            Q T +P     +  M   + V+    S+S      + +  P   D +S+++ P+ + +E 
Sbjct: 240  QPTPAPVPMPLAGWMSNPTPVAHP--SVSGGGAIGLGVGGPSMPDHISKRTRPIGMSDEG 297

Query: 283  ----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPM 338
                   + T+PG                    Q+F   S  D PKTV +TL +G SSPM
Sbjct: 298  NLPVNVLSATFPG----------------HGHGQAF--NSPDDLPKTVLRTLNQG-SSPM 338

Query: 339  SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
            SMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFKVWD+ ACSM F+ ALV+DP VS
Sbjct: 339  SMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFKVWDLSACSMPFQAALVKDPAVS 398

Query: 399  VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
            VNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG VNDLAFS P KQ+ V
Sbjct: 399  VNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGVNDLAFSHPNKQLCV 458

Query: 459  ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
            ITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD+
Sbjct: 459  ITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWLYDN 518

Query: 519  LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
            LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +VEWNESEGA+KRTYQG + + 
Sbjct: 519  LGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEWNESEGAVKRTYQGFRKR- 577

Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
             S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +PRI FNK G+LLA
Sbjct: 578  -SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPASPRIRFNKEGSLLA 636

Query: 639  VIANENRIKI---------LETPESNSVDAAGVLSDNLRKLSVNPI--------STVTGA 681
            V ANEN IKI         L + E++S DA+   S+ + K  +NP+        + +  A
Sbjct: 637  VSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAMTKPIINPMSVATAATSAALERA 695

Query: 682  GIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPSKVKANKIS 738
                    +N D +   D+KP IS E+ +KS++ K      PS C+SL LP   +  KIS
Sbjct: 696  SSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTEINEPSHCRSLKLPENARVTKIS 755

Query: 739  RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD 798
            RL Y N G AI ALASN +HL+W+W RND   S +AT  VPP+L+QP  G   M ND  D
Sbjct: 756  RLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATASVPPQLWQPSSG-ILMTNDIND 814

Query: 799  SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 858
            +N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+
Sbjct: 815  NNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPAATFLAFHPQDNNI 874

Query: 859  IAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918
            IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG D QIFVW+ DGW
Sbjct: 875  IAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSGADGQIFVWNTDGW 934

Query: 919  GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-S 977
              Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA +L CLKQWFP  +
Sbjct: 935  EKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHETQLAIYEATKLECLKQWFPRDA 994

Query: 978  SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYC 1037
            + PIS ATFSCD  ++F SF+D T+ +  ASNL ++CRI  +AYL    S   I      
Sbjct: 995  AAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCRINPSAYLSANVSSSNI------ 1048

Query: 1038 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1085
                  P  IAAHP +P QFAVGL++G V+V EP E    W V PP E
Sbjct: 1049 -----QPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESEGKWGVPPPIE 1091

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455301|ref|XP_003597931.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486979|gb|AES68182.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1191 bits (3081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1150 (54%), Positives = 779/1150 (67%), Gaps = 102/1150 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 239

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
            Q T +P     +  M   + V+  ++S                      + PTN +V  D
Sbjct: 240  QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 297

Query: 264  RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
             P  DSD +S+++ P+ + +E        + T+PG                    Q+F  
Sbjct: 298  YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 339

Query: 317  TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
             S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 340  NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 398

Query: 377  VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
            VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 399  VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 458

Query: 437  IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
            IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 459  IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 518

Query: 497  ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
            ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES 
Sbjct: 519  ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 578

Query: 557  LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
            +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+
Sbjct: 579  IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 636

Query: 617  DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
            DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E++S DA+   S+ +
Sbjct: 637  DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 695

Query: 668  RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
             K  +NP+        + +  A        +N D +   D+KP IS E+ +KS++ K   
Sbjct: 696  TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 755

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+W RND   S +AT 
Sbjct: 756  INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 815

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 816  SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 874

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 875  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 934

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHE
Sbjct: 935  VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 994

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T+ +  ASNL ++CR
Sbjct: 995  TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1054

Query: 1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075
            I  +AYL    S   I            P  IAAHP +P QFAVGL++G V+V EP E  
Sbjct: 1055 INPSAYLSANVSSSNI-----------QPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESE 1103

Query: 1076 DTWAVLPPDE 1085
              W V PP E
Sbjct: 1104 GKWGVPPPIE 1113

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357455305|ref|XP_003597933.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355486981|gb|AES68184.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1191 bits (3081), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 628/1150 (54%), Positives = 779/1150 (67%), Gaps = 102/1150 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL EE F E+ H LE+ES FYF+MK+FE+ + +G W++VE+YLS F
Sbjct: 16   MSSLSRELVFLILQFLEEEKFKEAVHKLEQESGFYFNMKYFEEEVHNGNWDEVEKYLSGF 75

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +K + IL KDLK F+  NEELFKE+ QLLT
Sbjct: 76   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKGVEILVKDLKVFSTFNEELFKEITQLLT 135

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSK YGD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 136  LENFRENEQLSK-YGDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 194

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   +    PP       
Sbjct: 195  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANMPLLGSLPKVGGFPPLGAHGPF 254

Query: 225  QTTQSPSSWNFSSSMLTDSAVSFVALSL---------------------SDPTNKAVTMD 263
            Q T +P     +  M   + V+  ++S                      + PTN +V  D
Sbjct: 255  QPTPAPVPMPLAGWMSNPTPVAHPSVSGGGAIGLGVGGPSMPAALKHPRTPPTNPSV--D 312

Query: 264  RPE-DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE 316
             P  DSD +S+++ P+ + +E        + T+PG                    Q+F  
Sbjct: 313  YPSGDSDHISKRTRPIGMSDEGNLPVNVLSATFPG----------------HGHGQAF-- 354

Query: 317  TSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK 376
             S  D PKTV +TL +G SSPMSMDFHPVQ TLLLVGTNV D GLW++ S ++L +RNFK
Sbjct: 355  NSPDDLPKTVLRTLNQG-SSPMSMDFHPVQQTLLLVGTNVADIGLWELGSRERLVLRNFK 413

Query: 377  VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE 436
            VWD+ ACSM F+ ALV+DP VSVNRV WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LE
Sbjct: 414  VWDLSACSMPFQAALVKDPAVSVNRVTWSPDGALFGVAYSRHIVQIYSYHGGDEVRQHLE 473

Query: 437  IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
            IDAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDA TG + Y+FEGH APVYS+CPH K
Sbjct: 474  IDAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAATGLKQYTFEGHEAPVYSVCPHYK 533

Query: 497  ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF 556
            ENI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES 
Sbjct: 534  ENIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESS 593

Query: 557  LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI 616
            +VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+
Sbjct: 594  IVEWNESEGAVKRTYQGFRKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTV 651

Query: 617  DAGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNL 667
            DA GGLP +PRI FNK G+LLAV ANEN IKI         L + E++S DA+   S+ +
Sbjct: 652  DADGGLPASPRIRFNKEGSLLAVSANENGIKILANGDGIRLLRSLENSSYDASRT-SEAM 710

Query: 668  RKLSVNPI--------STVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
             K  +NP+        + +  A        +N D +   D+KP IS E+ +KS++ K   
Sbjct: 711  TKPIINPMSVATAATSAALERASSVAAITGMNGDVRNLGDIKPRISEESNDKSKIWKLTE 770

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP   +  KISRL Y N G AI ALASN +HL+W+W RND   S +AT 
Sbjct: 771  INEPSHCRSLKLPENARVTKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSSGKATA 830

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VPP+L+QP  G   M ND  D+N+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 831  SVPPQLWQPSSG-ILMTNDINDNNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 889

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 890  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 949

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG D QIFVW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHE
Sbjct: 950  VLNVLVSSGADGQIFVWNTDGWEKQKNRFLQFPAGRTPPAQADTRVQFHQDQFRFLVVHE 1009

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAIYEA +L CLKQWFP  ++ PIS ATFSCD  ++F SF+D T+ +  ASNL ++CR
Sbjct: 1010 TQLAIYEATKLECLKQWFPRDAAAPISHATFSCDSNLIFASFLDATICVFSASNLRLRCR 1069

Query: 1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075
            I  +AYL    S   I            P  IAAHP +P QFAVGL++G V+V EP E  
Sbjct: 1070 INPSAYLSANVSSSNI-----------QPLVIAAHPHEPNQFAVGLSDGIVHVFEPLESE 1118

Query: 1076 DTWAVLPPDE 1085
              W V PP E
Sbjct: 1119 GKWGVPPPIE 1128

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356526242|ref|XP_003531727.1| PREDICTED: protein TOPLESS-like [Glycine max]

 Score = 1191 bits (3080), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 629/1152 (54%), Positives = 787/1152 (68%), Gaps = 106/1152 (9%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANNPLLGALPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
            Q T +P     + W  + + +  +AVS   A+ L  P+  A            ++D P  
Sbjct: 240  QPTPAPVPTPLAGWMSNPTTVAHAAVSGGGAIGLGAPSMPAALKHPRTPPTNPSVDYPSG 299

Query: 267  DSDILSEKS-PVRILNE-----QASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFS 320
            DSD +++++ P+ I +E        + T+PG                 +  Q+F      
Sbjct: 300  DSDHVAKRTRPMGISDEVNLPVNVLSATFPG---------------HGQHSQAFNAPD-- 342

Query: 321  DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
            D PKTV +TL +GSS PMSMDFHP+Q +LLLVGT+VGD  LW+V S ++L  RNFKVWD+
Sbjct: 343  DIPKTVVRTLNQGSS-PMSMDFHPMQQSLLLVGTHVGDIALWEVGSRERLVSRNFKVWDL 401

Query: 381  GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
             ACSM F+ ALV+DPGVSVNRV+WSPDG+L GVAYS+HIVQ+Y+YHGG + RQ LEIDAH
Sbjct: 402  SACSMPFQAALVKDPGVSVNRVIWSPDGALFGVAYSRHIVQIYSYHGGDEIRQHLEIDAH 461

Query: 441  VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
            VG VNDLAFS P KQ+ VITCGDDKTIKVWDA +G++ Y+FEGH APVYS+CPH KENI 
Sbjct: 462  VGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAASGAKQYTFEGHEAPVYSVCPHYKENIQ 521

Query: 501  FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
            FIFS ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+GES +VEW
Sbjct: 522  FIFSTALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESSIVEW 581

Query: 561  NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG 620
            NESEGA+KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLTT+DA G
Sbjct: 582  NESEGAVKRTYQG--FRKRSLGVVQFDTTKNRFLAAGDDFSIKFWDMDNVQLLTTVDADG 639

Query: 621  GLPENPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSV 672
            GLP +PRI FNK+GTLLAV ANEN IKIL   +         NS+  A   S+ L K ++
Sbjct: 640  GLPASPRIRFNKDGTLLAVSANENGIKILANGDGIRLLRTLENSLYEASRASEALTKPTI 699

Query: 673  NPI-----------------STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK- 714
            NPI                 S V  AG+   + ++      DVKP IS E+ +KS++ K 
Sbjct: 700  NPISAAAAAATSAALAERASSVVAIAGMNGDTRNLG-----DVKPRISEESNDKSKIWKL 754

Query: 715  PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 774
                  S+C+SL LP  V+  KISRL Y N G AI ALASN +HL+W+W RN+   S +A
Sbjct: 755  TEINEQSQCRSLKLPENVRVTKISRLIYTNSGNAILALASNAIHLLWKWQRNERNSSGKA 814

Query: 775  TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 834
            T  + P+L+QP  G   M ND  DSN ++AVPCFALSKND+Y+ SASGG ISL+ +MTFK
Sbjct: 815  TATLQPQLWQPSSG-ILMTNDIADSNPEDAVPCFALSKNDSYVMSASGGKISLFNMMTFK 873

Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
            T+ T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL F
Sbjct: 874  TMTTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAF 933

Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            S  LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A S+T +QFH+DQ +FL+V
Sbjct: 934  SHVLNVLVSSGADAQICVWNTDGWEKQKSRFLQLPPGRTPPAQSDTRVQFHQDQIQFLVV 993

Query: 955  HETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013
            HET LAIYEA +L  LKQWFP  SS PIS ATFSCD ++VF SF+D T+ +  ASNL ++
Sbjct: 994  HETQLAIYEATKLEGLKQWFPRDSSAPISYATFSCDSQLVFASFLDATICVFSASNLRLR 1053

Query: 1014 CRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073
            CRI  ++YL  + S +            + P  IAAHP +P QFA+GL++G V+V EP E
Sbjct: 1054 CRINPSSYLPASVSSN------------IQPLVIAAHPQEPNQFALGLSDGGVHVFEPLE 1101

Query: 1074 PGDTWAVLPPDE 1085
                W V PP E
Sbjct: 1102 SEGKWGVPPPIE 1113

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357458875|ref|XP_003599718.1| WD repeat-containing protein, putative [Medicago truncatula] gi|357468121|ref|XP_003604345.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355488766|gb|AES69969.1| WD repeat-containing protein, putative [Medicago truncatula] gi|355505400|gb|AES86542.1| WD repeat-containing protein, putative [Medicago truncatula]

 Score = 1189 bits (3075), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 630/1150 (54%), Positives = 783/1150 (68%), Gaps = 100/1150 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD +KA+ IL KDLK FA  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRSKAVEILVKDLKVFATFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPNLKNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPPQTTQSP- 230
            NWQH  C NP+PNPDI TLFVDH C             +   G   ++   PP     P 
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQPNGARAPSPANSPLLGSLPKAGGFPPLGAHGPF 239

Query: 231  -----------SSWNFSSSMLTDSAVSFV-ALSLSDPTNKAV-----------TMDRPE- 266
                       + W  + + +  +AVS   A+ L  P+               ++D P  
Sbjct: 240  QPNPAAVPTQLAGWMSNPTTVAHAAVSGAGAIGLGAPSMPGALKHPRTPPINPSVDYPSG 299

Query: 267  DSDILSEKS-PVRILNEQASTV-----TYPGVSLK---NIPDYSPKSSLKKEMFQSFGET 317
            DSD +++++ P+ I +E    V     T+PG       N PD  P               
Sbjct: 300  DSDHVAKRTRPMGITDEVNLPVNVLSGTFPGHGHSQAFNAPDDLP--------------- 344

Query: 318  SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV 377
                 PKTV +TL +GSS PMSMDFHPVQ +LLLVGTNVG   LW+V S +KL  RNFKV
Sbjct: 345  ----LPKTVTRTLNQGSS-PMSMDFHPVQQSLLLVGTNVGGIALWEVGSREKLVSRNFKV 399

Query: 378  WDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI 437
            WD+ ACSM F+ ALV+DP VSVNRV+WSPDG+L GVAYS+HIVQ+Y+YH G D RQ LEI
Sbjct: 400  WDLSACSMPFQAALVKDPSVSVNRVIWSPDGALFGVAYSRHIVQIYSYHTGDDVRQHLEI 459

Query: 438  DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE 497
            DAHVG VNDLAFS P KQ+ VITCGDDKTIKVWDAV+G++ Y+FEGH APVYS+CPH KE
Sbjct: 460  DAHVGGVNDLAFSHPNKQLCVITCGDDKTIKVWDAVSGAKQYTFEGHEAPVYSVCPHYKE 519

Query: 498  NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL 557
            NI FIFS ++DGKIKAWLYD+LG+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GES +
Sbjct: 520  NIQFIFSTALDGKIKAWLYDNLGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESSI 579

Query: 558  VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
            VEWNESEGA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLLTT+D
Sbjct: 580  VEWNESEGAVKRTYQGFRKR--SMGVVQFDTTKNRFLAAGDDFSIKFWDMDNIQLLTTVD 637

Query: 618  AGGGLPENPRICFNKNGTLLAVIANENRIKI---------LETPESNSVDAAGVLSDNLR 668
            A GGLP +PRI FNK+GTLLAV AN+N IKI         L T E+NS+  A   S+ + 
Sbjct: 638  ADGGLPASPRIRFNKDGTLLAVSANDNGIKIVANADGIRLLRTLENNSMYDASRASE-MA 696

Query: 669  KLSVNPISTVTG---------AGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PL 716
            K ++N +S+            A        +N D +   DVKP IS EA +KS++ K   
Sbjct: 697  KPTINSMSSAAAATSAALAERASSVAAIAGMNGDTRSMGDVKPRISEEANDKSKIWKLTE 756

Query: 717  FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
               PS C+SL LP  V+ NKISRL Y N G AI ALASN +HL+W+WPRN+   S +A  
Sbjct: 757  INEPSHCRSLKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWPRNERNSSGKANA 816

Query: 777  KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI 836
             VP +L+QP  G   M ND  DSN +++VPCFALSKND+Y+ SASGG ISL+ +MTFKT+
Sbjct: 817  SVPAQLWQPSSG-ILMTNDIADSNPEDSVPCFALSKNDSYVMSASGGKISLFNMMTFKTM 875

Query: 837  LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD 896
             T MPP P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS 
Sbjct: 876  TTFMPPPPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSH 935

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
             LN+LVSSG DAQI VW+ DGW  Q  R LQ P G    A S+T +QFH+DQ +FL+VHE
Sbjct: 936  VLNVLVSSGADAQICVWNTDGWEKQKTRFLQLPPGRTPSAQSDTRVQFHQDQIQFLVVHE 995

Query: 957  THLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
            T LAI+EA +L CLKQW P  SS PIS ATFSCD ++++ SF+D T+ +  ASNL ++CR
Sbjct: 996  TQLAIFEATKLECLKQWAPRDSSAPISHATFSCDSQLIYASFLDATVCVFNASNLRLRCR 1055

Query: 1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075
            I   AYL  + S +           +V P  IAAHP +  QFAVGL++G V+V EP E  
Sbjct: 1056 INPPAYLPASVSSNS----------NVQPLVIAAHPHEANQFAVGLSDGGVHVFEPLESE 1105

Query: 1076 DTWAVLPPDE 1085
              W V PP+E
Sbjct: 1106 GKWGVPPPNE 1115

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356554802|ref|XP_003545731.1| PREDICTED: topless-related protein 1-like isoform 1 [Glycine max]

 Score = 1187 bits (3071), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 622/1141 (54%), Positives = 775/1141 (67%), Gaps = 82/1141 (7%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FE+ KQ + EALD HD +KA+ IL KDLK FA  N+ELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEVMKQKYLEALDKHDRSKAVEILVKDLKVFATFNDELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY  D  SAR  M++ELK++IEANP+   KL+FP++K  RLR LINQSL
Sbjct: 121  LENFRENEQLSKYC-DTKSARAIMLVELKKLIEANPLFHDKLQFPNLKSSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC-QLQETD--------FSGQSSESNALPPQTTQSP- 230
            NWQH  C NP+PNPDI TLFVDH C QL              G   ++   PP     P 
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCGQLNGAPAPSPANNLLLGSLPKAGGFPPLGAHGPF 239

Query: 231  -----------SSWNFSSSMLTDSAVSFVALSLSDPTNKAV-----------TMDRPE-D 267
                       + W  + + +    VS  A+ L  P+  A            ++D P  D
Sbjct: 240  QPSPAPVPTPLAGWMSNPTTVAHPEVSGGAIGLGVPSIPAALKHPRTPPTYPSVDYPSGD 299

Query: 268  SDILSEKS-PVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV 326
            SD +S+++ P+ + +E    V     +        P         Q+F      D PKT 
Sbjct: 300  SDHVSKRTRPMGMSDEVNLPVNVLSATF-------PGHGHGHGHGQAFNAP--DDLPKTA 350

Query: 327  AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSML 386
             +TL +G SSPMSMDFHPVQ TLLLVGTNVGD  LW+V S ++L +RNFKVWD+ ACSM 
Sbjct: 351  MRTLNQG-SSPMSMDFHPVQQTLLLVGTNVGDIALWEVGSRERLLMRNFKVWDLSACSMP 409

Query: 387  FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
            F+ ALV+DPGVSV RV+WSPDG+L GVAYS+HIVQ+Y+YH G D +Q LEIDAHVG VND
Sbjct: 410  FQAALVKDPGVSVYRVIWSPDGALFGVAYSRHIVQIYSYHSGDDVQQHLEIDAHVGGVND 469

Query: 447  LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
            LAFS P KQ+ VITCGDDKTIKVWDA TG++ Y+FEGH APVYS+CPH KENI FIFS +
Sbjct: 470  LAFSHPNKQLCVITCGDDKTIKVWDAATGAKQYTFEGHEAPVYSVCPHYKENIQFIFSTA 529

Query: 507  VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA 566
            +DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+ ES +VEWNESEGA
Sbjct: 530  LDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDAESSIVEWNESEGA 589

Query: 567  IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
            +KRTYQG   +  S+  V FDT K++ LAAGDD  IK WDM+ +QLLTT+DA GGLP +P
Sbjct: 590  VKRTYQG--FRKRSLGFVQFDTTKNRYLAAGDDFSIKFWDMDNIQLLTTVDADGGLPGSP 647

Query: 627  RICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPISTV 678
            RI FNK+G LLAV A EN IKIL   +         NS+      S+ + K ++NPIS  
Sbjct: 648  RIRFNKDGALLAVSAKENGIKILANADGIRLLRTLENSLYDTSRTSEVMTKPTINPISAA 707

Query: 679  TGAGIAN----------GSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQS 725
              A  +           G  ++N D +   DVKP IS E+ +KS++ K      PS+C+S
Sbjct: 708  AAAATSAALGERALSVVGINAMNGDARNLGDVKPRISEESNDKSKIWKLTEINEPSQCRS 767

Query: 726  LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP 785
            L LP  V+ NKISRL Y N G AI ALASN +HL+W+W RND   + +A+  V P+L+QP
Sbjct: 768  LKLPENVRVNKISRLIYTNSGNAILALASNAIHLLWKWQRNDRNSTVKASASVQPQLWQP 827

Query: 786  RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT 845
              G   M ND TDSN+++AVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P 
Sbjct: 828  SSG-ILMTNDITDSNTEDAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMPPPPA 886

Query: 846  ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905
            A  LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GH+KR+TGL FS  LN+LVSSG
Sbjct: 887  ANFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHTKRITGLAFSHVLNVLVSSG 946

Query: 906  GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE 965
             DAQI VW+ DGW  Q  R LQ P G    A ++T +QFH+DQ RFL+VHET LAIYEA 
Sbjct: 947  ADAQICVWNTDGWEKQKSRFLQLPAGRTPPAQADTRVQFHQDQIRFLVVHETQLAIYEAT 1006

Query: 966  ELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024
            +L CLKQWFP  SS PIS ATFSCD ++++ SF+D T+ +   SNL +QCRI  +AYL  
Sbjct: 1007 KLECLKQWFPRDSSAPISHATFSCDSQLIYASFLDATVCVFSVSNLRLQCRINPSAYLSA 1066

Query: 1025 TTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1084
            + S +            V P  IAAHP +P QFAVGL++G V+V EP E    W V PP 
Sbjct: 1067 SVSSN------------VQPLVIAAHPQEPNQFAVGLSDGGVHVFEPLESEGKWGVPPPI 1114

Query: 1085 E 1085
            E
Sbjct: 1115 E 1115

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|24461849|gb|AAN62336.1|AF506028_3 CTV.2 [Citrus trifoliata]

 Score = 1186 bits (3068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 625/1142 (54%), Positives = 782/1142 (68%), Gaps = 99/1142 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W+DVE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDDVEKYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD AKA+ IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDKHDRAKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP++K        N SL
Sbjct: 121  LENFRENEQLSKY-GDTKSARSIMLVELKKLIEANPLFRDKLQFPNLK--------NSSL 171

Query: 181  NWQHVHCANPQPNPDINTLFVDHVC---------QLQETDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C                 G   ++   PP       
Sbjct: 172  NWQHQLCKNPRPNPDIKTLFVDHTCGQPNGARAPSPANNPLLGSLPKAGVFPPLGAHGPF 231

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPE------------- 266
            Q T +P     + W  +   +T  AVS  A+ L  P+  A  +  P              
Sbjct: 232  QPTPAPVPTPLAGWMSNPPTVTHPAVSGGAIGLGSPSIPAAALKHPRTPPTNPSVDYPSG 291

Query: 267  DSDILSEKS-PVRILNEQASTVTYPGVSLKNIP-DYSPKSSLKKEMFQSFGETSFSDFPK 324
            DSD LS+++ P+ I +E             N+P +  P S       Q+F  ++  D PK
Sbjct: 292  DSDHLSKRTRPIGISDE------------INLPVNVLPVSFTGHSHSQAF--SAPEDLPK 337

Query: 325  TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS 384
            TV +TL +GSS PMSMDFHPVQ TLLLVGTNVGD GLW+V S ++L +RNFKVWD+GACS
Sbjct: 338  TVTRTLNQGSS-PMSMDFHPVQQTLLLVGTNVGDIGLWEVGSRERLVLRNFKVWDLGACS 396

Query: 385  MLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNV 444
            M  + ALV+DPGVSVNRV+WSPDGSL GVAYS+HIVQ+Y+YHGG + RQ LEIDAHVG V
Sbjct: 397  MPLQAALVKDPGVSVNRVIWSPDGSLFGVAYSRHIVQIYSYHGGDEVRQHLEIDAHVGGV 456

Query: 445  NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFS 504
            ND+AFS P KQ+ VITCGDDKTIKVWDA  G++ Y FEGH APVYS+CPH KENI FIFS
Sbjct: 457  NDIAFSHPNKQLCVITCGDDKTIKVWDATNGAKQYIFEGHEAPVYSVCPHHKENIQFIFS 516

Query: 505  ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE 564
             ++DGKIKAWLYD+LG+RVDY+APG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESE
Sbjct: 517  TALDGKIKAWLYDNLGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESE 576

Query: 565  GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE 624
            GA+KRTYQG + +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT+IDA GGLP 
Sbjct: 577  GAVKRTYQGFRKR--SLGVVQFDTTKNRFLAAGDDFSIKFWDMDSVQLLTSIDADGGLPA 634

Query: 625  NPRICFNKNGTLLAVIANENRIKILETPES--------NSVDAAGVLSDNLRKLSVNPIS 676
            +PRI FNK+G LLAV  N+N IKIL T +         N    A   S+N  K +++PIS
Sbjct: 635  SPRIRFNKDGCLLAVSTNDNGIKILATSDGIRLLRTFENLAYDASRTSEN-SKPTISPIS 693

Query: 677  -----TVTGAGIANGSVSVNEDPK--------EDVKPEISVEAENKSEVEK-PLFARPSE 722
                   T AG+A+ + S+   P          DVKP I+ E+ +KS+V K    + P++
Sbjct: 694  AAAAAAATSAGLADRAASMVSIPGMNGDVRSLADVKPRITEESNDKSKVWKLTELSEPNQ 753

Query: 723  CQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL 782
            C+SL LP  ++A KISRL + N G AI ALASN +HL+W+W R +   S +AT  V P+L
Sbjct: 754  CRSLRLPENLRATKISRLIFTNSGNAILALASNAIHLLWKWQRTERNSSGKATASVAPQL 813

Query: 783  YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP 842
            +QP  G   M ND TDSN +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP
Sbjct: 814  WQPPSG-IMMTNDVTDSNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPP 872

Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
             P AT LAF+P DNN+IAIGMDDS+I IYN R  EV SKL+GHSKR+TGL FS ALN+LV
Sbjct: 873  PPAATFLAFHPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHSKRITGLAFSHALNVLV 932

Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY 962
            SSG D+Q+ VW  DGW  Q  R LQ P G    A S+T +QFH+DQ  FL+VHET LAI+
Sbjct: 933  SSGADSQLCVWGSDGWEKQKNRFLQIPTGRTPTAQSDTRVQFHQDQIHFLVVHETQLAIF 992

Query: 963  EAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021
            E  +L C+KQW P  SS PI+ ATFSCD ++V+  F+D T+ +  A+NL+++CRI  +AY
Sbjct: 993  ETTKLECVKQWVPRESSAPITHATFSCDSQLVYACFLDATVCVFSAANLKLRCRINPSAY 1052

Query: 1022 LRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVL 1081
            L    S +            V+P  IAAHP +P +FA+GL++G V+V EP E    W V 
Sbjct: 1053 LPAGVSSN------------VHPLVIAAHPQEPNEFALGLSDGGVHVFEPLESEGKWGVP 1100

Query: 1082 PP 1083
            PP
Sbjct: 1101 PP 1102

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297839887|ref|XP_002887825.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata] gi|297333666|gb|EFH64084.1| hypothetical protein ARALYDRAFT_895943 [Arabidopsis lyrata subsp. lyrata]

 Score = 1183 bits (3061), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 616/1137 (54%), Positives = 779/1137 (68%), Gaps = 92/1137 (8%)

Query: 1    MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
            MS L+++LVFLILQFL+EE F E+ H LE+ES F+F+MK+FED + +G W++VE+YLS F
Sbjct: 1    MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVERYLSGF 60

Query: 61   TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
            TKVDDNRYS KI+FEIRKQ + EALD HD  KA+ IL KDLK F+  NEELFKE+ QLLT
Sbjct: 61   TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVEILVKDLKVFSTFNEELFKEITQLLT 120

Query: 121  LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
            L++ R++E LSKY GD  SAR  M++ELK++IEANP+ + KL+FP+++  RLR LINQSL
Sbjct: 121  LENFRENEQLSKY-GDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSL 179

Query: 181  NWQHVHCANPQPNPDINTLFVDHVCQLQE---------TDFSGQSSESNALPP------- 224
            NWQH  C NP+PNPDI TLFVDH C+L               G   ++   PP       
Sbjct: 180  NWQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAGGFPPLGAHGPF 239

Query: 225  QTTQSP-----SSWNFSSSMLTDSAVSFVALSL-------------SDPTNKAVTMDRPE 266
            Q T SP     + W  S S +   AVS  A++L             + PTN AV  D P 
Sbjct: 240  QPTPSPVPTPLAGWMSSPSSVPHPAVSGGAIALGAPSIQAALKHPRTPPTNSAV--DYPS 297

Query: 267  -DSDILSEKS-PVRILNEQASTV-----TYPGVSLKN-----IPDYSPKSSLKKEMFQSF 314
             DSD +S+++ P+ I +E +  V     T+PG +  +     +PD               
Sbjct: 298  GDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKVPD--------------- 342

Query: 315  GETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRN 374
                  D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + 
Sbjct: 343  ------DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKT 395

Query: 375  FKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ 434
            FKVWD+  CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ 
Sbjct: 396  FKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQH 455

Query: 435  LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
            LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + ++FEGH APVYS+CPH
Sbjct: 456  LEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRHTFEGHEAPVYSICPH 515

Query: 495  AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE 554
             KENI FIFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+GE
Sbjct: 516  YKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGE 575

Query: 555  SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT 614
            SF+VEWNESEGA+KRTYQG      S+ VV FDT K++ LAAGDD  IK WDM+ +QLLT
Sbjct: 576  SFIVEWNESEGAVKRTYQG--FHKRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLT 633

Query: 615  TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN 673
             IDA GGL  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++N
Sbjct: 634  AIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAIN 693

Query: 674  PISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEK-PLFARPSECQSLLLPS 730
             I              +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP 
Sbjct: 694  SIPVAERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTELGEPSQCRSLRLPE 753

Query: 731  KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ 790
             ++A KISRL + N G AI ALASN +HL+W+W RND   + +AT  VPP+ +QP  G  
Sbjct: 754  NMRATKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASVPPQQWQPASG-I 812

Query: 791  FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA 850
             M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LA
Sbjct: 813  LMTNDVVETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLA 872

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
            F+P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+
Sbjct: 873  FHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQL 932

Query: 911  FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL 970
             VW+ DGW  Q  + LQ P G  T A S+T +QFH+DQ  FL+VHET LAIYE  +L C+
Sbjct: 933  CVWNTDGWEKQKSKVLQIPQGRSTSALSDTRVQFHQDQVHFLVVHETQLAIYETTKLECM 992

Query: 971  KQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSH 1028
            KQW P+  SS PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S+
Sbjct: 993  KQW-PVRESSAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSN 1051

Query: 1029 DKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1085
                        +V+P  IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct: 1052 S-----------NVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	1103
TAIR|locus:2198888	1120	TPR1 "TOPLESS-related 1" [Arab	0.728	0.716	0.552	3.3e-312
TAIR|locus:2036204	1131	TPL "TOPLESS" [Arabidopsis tha	0.783	0.763	0.530	3e-311
TAIR|locus:2086770	1131	TPR2 "TOPLESS-related 2" [Arab	0.641	0.625	0.489	2.2e-266
TAIR|locus:2040100	740	AT2G25420 "AT2G25420" [Arabido	0.320	0.477	0.352	3.8e-84
ASPGD|ASPL0000032162	1364	AN8468 [Emericella nidulans (t	0.551	0.445	0.239	4.9e-17
MGI|MGI:1918511	476	Poc1b "POC1 centriolar protein	0.227	0.527	0.242	3.6e-14
UNIPROTKB|G3N3E5	308	WDR5 "WD repeat-containing pro	0.185	0.665	0.243	8.6e-14
TAIR|locus:2172432	523	AT5G43920 "AT5G43920" [Arabido	0.166	0.351	0.264	1e-13
FB|FBgn0040066	361	wds "will die slowly" [Drosoph	0.185	0.567	0.247	1.2e-13
UNIPROTKB|Q5M786	334	wdr5 "WD repeat-containing pro	0.185	0.613	0.243	1.2e-13

TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 2314 (819.6 bits), Expect = 3.3e-312, Sum P(2) = 3.3e-312
 Identities = 463/838 (55%), Positives = 590/838 (70%)

Query:   255 PTNKAVTMDRPE-DSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQS 313
             P+N AV  D P  DSD +S+++    ++++ S     GV++  +P   P  +      Q+
Sbjct:   288 PSNSAV--DYPSGDSDHVSKRTRPMGISDEVSL----GVNM--LPMTFPGQAHGHN--QT 337

Query:   314 FGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIR 373
             F      D PKTVA+TL +GSS PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  +
Sbjct:   338 FKAPD--DLPKTVARTLSQGSS-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQK 394

Query:   374 NFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
              FKVWD+  CSM  + ALV++P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ
Sbjct:   395 TFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQ 454

Query:   434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
              LEIDAHVG VND+AFS P KQ+ V TCGDDKTIKVWDA TG + Y+FEGH APVYS+CP
Sbjct:   455 HLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICP 514

Query:   494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
             H KENI FIFS ++DGKIKAWLYD++G+RVDY+APG  CT MAYSA+G RLFSCGTSK+G
Sbjct:   515 HYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDG 574

Query:   554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
             ESF+VEWNESEGA+KRTYQG   +  S+ VV FDT K++ LAAGDD  IK WDM+ +QLL
Sbjct:   575 ESFIVEWNESEGAVKRTYQGFHKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLL 632

Query:   614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSV 672
             T IDA GGL  +PRI FNK G+LLAV AN+N IK++   +    +     LS    K ++
Sbjct:   633 TAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAI 692

Query:   673 NPISTVTGAGIANGSVSVNEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLP 729
             N I  V           +N D +   DVKP I+ E+ +KS+V K      PS+C+SL LP
Sbjct:   693 NSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLP 752

Query:   730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789
               ++  KISRL + N G AI ALASN +HL+W+W RND   + +AT  +PP+ +QP  G 
Sbjct:   753 ENMRVTKISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGI 812

Query:   790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 849
               M ND  ++N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT L
Sbjct:   813 -LMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFL 871

Query:   850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909
             AF+P DNN+IAIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ
Sbjct:   872 AFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQ 931

Query:   910 IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC 969
             + VW+ DGW  Q  + LQ P G  T + S+T +QFH+DQ  FL+VHET LAIYE  +L C
Sbjct:   932 LCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLEC 991

Query:   970 LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1027
             +KQW P+  S+ PI+ ATFSCD ++++TSF+D T+ +  ++NL ++CR+  +AYL  + S
Sbjct:   992 MKQW-PVRESAAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLS 1050

Query:  1028 HDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1085
             +            +V+P  IAAHP +   FAVGL++G V++ EP E    W V PP E
Sbjct:  1051 NS-----------NVHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPE 1097

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005829 "cytosol" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)]

 Score = 2312 (818.9 bits), Expect = 3.0e-311, Sum P(2) = 3.0e-311
 Identities = 481/906 (53%), Positives = 610/906 (67%)

Query:   223 PPQTTQSP-----SSWNFSSSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPV 277
             P Q T SP     + W  S S +   AVS  A++L  P+  A  +  P      +     
Sbjct:   238 PFQPTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIPAA-LKHPRTPPTNASLDYP 296

Query:   278 RILNEQASTVTYP-GVSLK-NIP-DYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGS 334
                +E  S  T P G+S + N+  +  P S   +    S    +  D PKTVA+TL +GS
Sbjct:   297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356

Query:   335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
             S PMSMDFHP++ TLLLVGTNVGD GLW+V S ++L  + FKVWD+  CSM  + ALV++
Sbjct:   357 S-PMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKE 415

Query:   395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK 454
             P VSVNRV+WSPDGSL GVAYS+HIVQLY+YHGG D RQ LEIDAHVG VND++FS P K
Sbjct:   416 PVVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNK 475

Query:   455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
             Q+ VITCGDDKTIKVWDA TG + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAW
Sbjct:   476 QLCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAW 535

Query:   515 LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL 574
             LYD++G+RVDYDAPG  CT MAYSA+G RLFSCGTSK+GESF+VEWNESEGA+KRTYQG 
Sbjct:   536 LYDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGF 595

Query:   575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG 634
               +  S+ VV FDT K++ LAAGDD  IK WDM+ VQLLT ID  GGL  +PRI FNK G
Sbjct:   596 HKR--SLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEG 653

Query:   635 TLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTV-----TGAGIANGSV 688
             +LLAV  NEN IKI+   +    +     +S    K ++N I+       T AG A+ S 
Sbjct:   654 SLLAVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSA 713

Query:   689 SV------NEDPKE--DVKPEISVEAENKSEVEKPL-FARPSECQSLLLPSKVKANKISR 739
             +V      N D +   DVKP I+ E+ +KS++ K    + PS+C+SL LP  ++  KISR
Sbjct:   714 NVVSIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRVAKISR 773

Query:   740 LTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS 799
             L + N G AI ALASN +HL+W+W RN+   + +AT  +PP+ +QP  G   M ND  ++
Sbjct:   774 LIFTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGI-LMTNDVAET 832

Query:   800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI 859
             N +EAVPCFALSKND+Y+ SASGG ISL+ +MTFKT+ T MPP P AT LAF+P DNN+I
Sbjct:   833 NPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNII 892

Query:   860 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG 919
             AIGMDDSTI IYN R  EV SKL+GHSKR+TGL FS+ LN+LVSSG DAQ+ VW+ DGW 
Sbjct:   893 AIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWE 952

Query:   920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSV 979
              Q  + L  P G    APS+T +QFH+DQ  FL+VHET LAIYE  +L C+KQW    S+
Sbjct:   953 KQRSKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL 1012

Query:   980 -PISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCS 1038
              PI+ ATFSCD ++V+ SF+D T+ +  ++NL ++CR+  +AYL  + S+          
Sbjct:  1013 APITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNS--------- 1063

Query:  1039 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE--IVGDQPTSTSE 1096
               +V+P  IAAHP +P  FAVGL++G V++ EP E    W V PP E       PT+ S 
Sbjct:  1064 --NVHPLVIAAHPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSV 1121

Query:  1097 GDRAMD 1102
             G  A D
Sbjct:  1122 GASASD 1127

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0010072 "primary shoot apical meristem specification" evidence=IGI;IMP

GO:0009733 "response to auxin stimulus" evidence=IPI

GO:0010051 "xylem and phloem pattern formation" evidence=IGI

GO:0042803 "protein homodimerization activity" evidence=IPI

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IMP

TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 1726 (612.6 bits), Expect = 2.2e-266, Sum P(2) = 2.2e-266
 Identities = 361/737 (48%), Positives = 483/737 (65%)

Query:     1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFYFDMKFFEDMILDGKWEDVEQYLSSF 60
             MS L+++LVFLILQFL+EE F ES H LE+ES F+F++K+FE+  L G+W++VE+YLS F
Sbjct:     1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60

Query:    61 TKVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLT 120
             TKVDDNRYS KI+FEIRKQ + EALD +D AKA+ IL KDLK FA  NEEL+KE+ QLLT
Sbjct:    61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120

Query:   121 LDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSL 180
             L++ R++E LSKY GD  SAR  M  ELK++IEANP+ + KL FPS K  RLR LINQSL
Sbjct:   121 LENFRENEQLSKY-GDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSL 179

Query:   181 NWQHVHCANPQPNPDINTLFVDHVCQ-------LQETDF--SGQSSESNALPPQTTQSPS 231
             NWQH  C NP+PNPDI TLF+DH C        L   +   +  +  SN +P      P 
Sbjct:   180 NWQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPF 239

Query:   232 SWNFSSSMLTDSAVSFVAL---SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVT 288
               N + +   ++   ++A    S S P+        P     ++E    R  +     + 
Sbjct:   240 QSNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMD 299

Query:   289 YPGVSLKNIPDYSPKSSLKKEMF---QSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPV 345
             Y     + +      +    E+     S    S  D P+ V  T+ +GS   +SMDFHP 
Sbjct:   300 YQSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVV-ISMDFHPS 358

Query:   346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS 405
              HTLL VG + G+  LW+V S +K+    FK+W++ ACS++F+ ++V++P +SV RV WS
Sbjct:   359 HHTLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWS 418

Query:   406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK 465
             PDG+LLGV+++KH++ +YAY G SD RQ LEIDAHVG VNDLAF+ P KQ+ V+TCGDDK
Sbjct:   419 PDGNLLGVSFTKHLIHVYAYQG-SDLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDK 477

Query:   466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
              IKVWD ++G + ++FEGH APVYS+CPH KENI FIFS ++DGKIKAWLYD++G+RVDY
Sbjct:   478 LIKVWD-LSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDY 536

Query:   526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH 585
             DAPG  CT M YSA+G RLFSCGTSKEG+SFLVEWNESEGA+KRTY G + +  S  VV 
Sbjct:   537 DAPGQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKK--SAGVVQ 594

Query:   586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR 645
             FDT +++ LA G+D+ IK W+M+   LLT ++A GGLP  PR+ FNK+G LLAV   +N 
Sbjct:   595 FDTTRNRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNG 654

Query:   646 IKILETPES-NSVDAAGVLSDNLRKLSVN-PISTVTGAGIANGSVSVNE--DPKEDVKPE 701
              KIL   +   ++ A    S    K S++  +ST   A   + ++   E  D     +P 
Sbjct:   655 FKILANTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSISPAIGKIEHMDAGSPARPT 714

Query:   702 I---SVEAENKSEVEKP 715
                  +EA +++ +EKP
Sbjct:   715 PIPNGIEAMSRT-MEKP 730

GO:0005634 "nucleus" evidence=ISM

GO:0010072 "primary shoot apical meristem specification" evidence=IGI

GO:0005515 "protein binding" evidence=IPI

GO:0000226 "microtubule cytoskeleton organization" evidence=RCA

GO:0000911 "cytokinesis by cell plate formation" evidence=RCA

GO:0000956 "nuclear-transcribed mRNA catabolic process" evidence=RCA

TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)]

 Score = 555 (200.4 bits), Expect = 3.8e-84, Sum P(2) = 3.8e-84
 Identities = 132/374 (35%), Positives = 199/374 (53%)

Query:   720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP 779
             PS+C +L+LP      KI+RLTY+  G  I ALA +  H +W W  +      E      
Sbjct:   375 PSQCNALVLPDCFSEEKIARLTYSPSGDYILALAEDATHKLWTWSSSQNEFCKE-NVYPK 433

Query:   780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI 839
             PRL+QP+ G + M N+   S  Q++  CFA+    +YLFS SGG I+++ +  F+ + + 
Sbjct:   434 PRLHQPQSG-KTMENEMATS-VQKSTSCFAVK--GSYLFSTSGGKIAVFDLKNFEKVASF 489

Query:   840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
               P+P AT   F P D  ++A+G+DD +I I+   S +V  KLEGH +++T L FS   N
Sbjct:   490 GSPTPMATYFIFIPGD--LLAVGLDDGSIFIHCLSSRKVKEKLEGHDQKITCLAFSRCFN 547

Query:   900 ILVSSGGDAQIFVWDVDGWGIQTCR-SLQTPDGVMTLAPSE--THIQFHKDQTRFLLVHE 956
             +LVSS  D ++ +W    W   T + S +       L  +   THIQF   Q   L+VH+
Sbjct:   548 VLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFCNRSNLESTSLVTHIQFDPYQIELLVVHD 607

Query:   957 THLAIYEAEELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015
               + +YE   L C  QW P +S P I+ AT+S D  +++  F  G++ I ++      C+
Sbjct:   608 GWIGLYEVRTLDCRLQWIPDASDPAITSATYSSDGEIIYVGFRCGSIKIVDSKTFMTLCQ 667

Query:  1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075
             I  T++ + +TS+           L VYP  +AAHP  P Q + GL+NG+V V++P   G
Sbjct:   668 INLTSFTQLSTSNIS---------LEVYPTVVAAHPSHPNQISAGLSNGKVIVLQPLWSG 718

Query:  1076 DTWAVLPPDEIVGD 1089
               W    P E  GD
Sbjct:   719 G-WGEAAPLEDNGD 731

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0080008 "Cul4-RING ubiquitin ligase complex" evidence=ISS

GO:0006346 "methylation-dependent chromatin silencing" evidence=RCA

GO:0007267 "cell-cell signaling" evidence=RCA

GO:0009616 "virus induced gene silencing" evidence=RCA

GO:0009855 "determination of bilateral symmetry" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010050 "vegetative phase change" evidence=RCA

GO:0010073 "meristem maintenance" evidence=RCA

GO:0010267 "production of ta-siRNAs involved in RNA interference" evidence=RCA

GO:0031048 "chromatin silencing by small RNA" evidence=RCA

GO:0035196 "production of miRNAs involved in gene silencing by miRNA" evidence=RCA

GO:0051567 "histone H3-K9 methylation" evidence=RCA

ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)]

 Score = 264 (98.0 bits), Expect = 4.9e-17, Sum P(2) = 4.9e-17
 Identities = 168/701 (23%), Positives = 298/701 (42%)

Query:   300 YSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFH--PVQHTLLLVGTNVG 357
             +SP+ S+ + +F ++  + +S  PK V QT    S+   +++ H  PV+  +        
Sbjct:   711 FSPEGSITRRIF-NYNLSGWSQLPK-VEQTW---SAEQQTLENHLGPVESVVFSPDGKQL 765

Query:   358 DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK 417
              +G +D            K+WD  A   L +T L    G +V  + +SPDG LL      
Sbjct:   766 VSGSYD---------DTVKIWD-PATGELLQT-LDGHSG-TVESLAFSPDGKLLASGSYD 813

Query:   418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR 477
             + + L+    G +  Q  E   H  ++  +AF+   K+++  +  DD TIK+WD  TG  
Sbjct:   814 NTIDLWDSATG-ELLQTFE--GHPHSIWSVAFAPDGKELA--SASDDSTIKIWDLATGEL 868

Query:   478 TYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTR 534
               + + H   V S+   P  K     + S S+D  IK W  +     +     G  G  +
Sbjct:   869 QQTLDSHSQSVRSVAFSPDGK----LLASSSLDSTIKVW--NPATGELQQSLEGRSGWVK 922

Query:   535 -MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI 593
              +A+S +G++L S G+ K        WN + G + +T +G      SV  V F     Q+
Sbjct:   923 SVAFSPDGKKLAS-GSEKNTVKL---WNPATGELLQTLEG---HSQSVRSVAFSPDGKQL 975

Query:   594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI--LET 651
              ++  D  IK+W+    +L  T   G  L     + F+ +G  L   +++N IK+  L T
Sbjct:   976 ASSSSDTTIKLWNSTTGELQQTFK-GHDLWIRA-VAFSPDGKHLVSGSDDNTIKLWDLAT 1033

Query:   652 PE--------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN-EDPKEDVK--- 699
              E        S SV A     D+ +  S +  ST+     A G +    E   + V+   
Sbjct:  1034 SELQQSLEDHSRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGHSQGVRSVT 1093

Query:   700 --PEISVEAENKSEVEKPLFARP--SECQSLLLPSKVKANKISRLTYNNGGQAIFALASN 755
               P+  + A N  +    L+  P   E Q  L     +++ +  + ++  G+ + +   +
Sbjct:  1094 FSPDGKLLASNSYDGTIKLW-NPLTGELQQTLTG---RSDWVDSVAFSPDGKQLASGYYD 1149

Query:   756 GVHLMWRWPRNDLTLSTEA-TTKVPPRLYQP-----RHGPQFMVNDTTDSNSQEAVPCF- 808
                 +W     +L  + E  + ++   ++ P       G         D  + E +  F 
Sbjct:  1150 STIKLWDSATGELLQTLEGHSDRIQSVVFSPDGKLLASGSYDQTAKLWDPATGELLQIFE 1209

Query:   809 ---------ALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNV 858
                      A S +   L S+S G  I L+  +T + + T+  P  +A S+AF+P  N +
Sbjct:  1210 GHSKWVESVAFSPDGKLLASSSYGETIKLWDPVTGELLQTLNDPDESAGSVAFSPDGNRL 1269

Query:   859 IAIGMDDSTILIYNARSSEVISKLEGHSKRV---TGLVFSDALNILVSSGGDAQIFVWDV 915
              ++ + D+ I  ++  + E++  L+GHSK V   TG   S  L+  +    + +I +W  
Sbjct:  1270 ASVDIFDTKI--WDPATGELLQALKGHSKWVWSRTGAGISIFLDQWLCLQ-EKRI-LWLP 1325

Query:   916 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
               +    C S+   DGV+ L  S   + F +   RFL+  E
Sbjct:  1326 QSYQ-PFCISVN--DGVLVLGHSSGRVSFIQGP-RFLIESE 1362

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

MGI|MGI:1918511 Poc1b "POC1 centriolar protein homolog B (Chlamydomonas)" [Mus musculus (taxid:10090)]

 Score = 173 (66.0 bits), Expect = 3.6e-14, Sum P(2) = 3.6e-14
 Identities = 64/264 (24%), Positives = 108/264 (40%)

Query:   427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
             G  D   +     H   +    FS  CKQI+  T   D  + +W     +R Y + GH  
Sbjct:     4 GLEDPILERSFKGHKAAITSADFSPNCKQIA--TASWDTFLMLWSLKPHARAYRYVGHKD 61

Query:   487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
              V SL    + N+  + S S D  ++ W+ D  G   ++ A       + +SA+G+ L  
Sbjct:    62 VVTSLQFSPQGNL--LASASRDRTVRLWVLDRKGKSSEFKAHTAPVRSVDFSADGQLLV- 118

Query:   547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
               T+ E +S  V W+      +R    L    + V    F      I++  +D  IKIWD
Sbjct:   119 --TASEDKSIKV-WSMFR---QRFLYSLYRHTHWVRCAKFSPDGRLIVSCSEDKTIKIWD 172

Query:   607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN 666
                 Q +       G      + FN NGT +A   +++ +KI +   +  +    V S  
Sbjct:   173 TTNKQCVNNFSDSVGFANF--VDFNPNGTCIASAGSDHAVKIWDIRMNKLLQHYQVHSCG 230

Query:   667 LRKLSVNPISTVTGAGIANGSVSV 690
             +  LS +P+        ++G+V +
Sbjct:   231 VNCLSFHPLGNSLVTASSDGTVKM 254

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=IEA

GO:0005813 "centrosome" evidence=ISO

GO:0005814 "centriole" evidence=ISO

GO:0005856 "cytoskeleton" evidence=IEA

GO:0005932 "microtubule basal body" evidence=ISO

GO:0030030 "cell projection organization" evidence=IEA

GO:0042384 "cilium assembly" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

UNIPROTKB|G3N3E5 WDR5 "WD repeat-containing protein 5" [Bos taurus (taxid:9913)]

 Score = 170 (64.9 bits), Expect = 8.6e-14, Sum P(2) = 8.6e-14
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    21 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76

Query:   458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:    77 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133

Query:   518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187

Query:   578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

GO:0071339 "MLL1 complex" evidence=IEA

GO:0048188 "Set1C/COMPASS complex" evidence=IEA

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=IEA

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=IEA

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=IEA

GO:0043966 "histone H3 acetylation" evidence=IEA

GO:0042800 "histone methyltransferase activity (H3-K4 specific)" evidence=IEA

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IEA

GO:0001501 "skeletal system development" evidence=IEA

TAIR|locus:2172432 AT5G43920 "AT5G43920" [Arabidopsis thaliana (taxid:3702)]

 Score = 158 (60.7 bits), Expect = 1.0e-13, Sum P(3) = 1.0e-13
 Identities = 54/204 (26%), Positives = 96/204 (47%)

Query:     7 DLVFLILQFLNEEGFTESAHMLERESRFYF---DMKFFEDMILDGKWEDVEQYLSSF--T 61
             + + +++Q L   GF  SA  LE ES+  +   D +F E  +L G W+   Q L      
Sbjct:    19 EFIRILVQCLYSLGFKNSASCLEFESKILYKTADSEFLEKQVLSGNWDSCVQVLDRIFDN 78

Query:    62 KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTL 121
              +DD R +T +Y  + KQ   E L   D++ ALN+L+K       G E++ +    ++  
Sbjct:    79 SMDDTR-NTALYL-VFKQCLLEYLKRGDVSLALNVLRKQAPLLRMGKEKIHRLACDIVYS 136

Query:   122 DDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIKRQRLRRLINQSLN 181
              ++   E+ +      L  R+ +++EL+++I   PI+        I  +RL  L+  ++ 
Sbjct:   137 KEMESGEVDNCL---VLDLRRKLLVELEKLIPL-PIV--------IPERRLEHLVETAVM 184

Query:   182 WQHVHCANPQPNPDINTLFVDHVC 205
              Q   C     + D  +L+ DH C
Sbjct:   185 DQIDTCMYHN-SCDAVSLYKDHCC 207

GO:0000166 "nucleotide binding" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISM

FB|FBgn0040066 wds "will die slowly" [Drosophila melanogaster (taxid:7227)]

 Score = 170 (64.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 54/218 (24%), Positives = 104/218 (47%)

Query:   398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+  + + 
Sbjct:    74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129

Query:   458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
              ++  DDKT+KVW+  TG    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVR 186

Query:   518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   187 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 240

Query:   578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   241 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 278

GO:0005671 "Ada2/Gcn5/Ada3 transcription activator complex" evidence=IPI

GO:0006338 "chromatin remodeling" evidence=IDA

GO:0004402 "histone acetyltransferase activity" evidence=IDA

GO:0016573 "histone acetylation" evidence=IDA

GO:0005875 "microtubule associated complex" evidence=IDA

GO:0007095 "mitotic G2 DNA damage checkpoint" evidence=IGI

GO:0048188 "Set1C/COMPASS complex" evidence=IDA

GO:0022008 "neurogenesis" evidence=IMP

GO:0051568 "histone H3-K4 methylation" evidence=IMP;IDA

GO:0044665 "MLL1/2 complex" evidence=ISS

GO:0044666 "MLL3/4 complex" evidence=IDA

UNIPROTKB|Q5M786 wdr5 "WD repeat-containing protein 5" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 170 (64.9 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
 Identities = 53/218 (24%), Positives = 103/218 (47%)

Query:   398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
             +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct:    47 AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102

Query:   458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
              ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct:   103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159

Query:   518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
             +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct:   160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213

Query:   578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct:   214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

GO:0000123 "histone acetyltransferase complex" evidence=ISS

GO:0034968 "histone lysine methylation" evidence=ISS

GO:0035064 "methylated histone residue binding" evidence=ISS

GO:0043981 "histone H4-K5 acetylation" evidence=ISS

GO:0043982 "histone H4-K8 acetylation" evidence=ISS

GO:0043984 "histone H4-K16 acetylation" evidence=ISS

GO:0071339 "MLL1 complex" evidence=ISS

GO:0043995 "histone acetyltransferase activity (H4-K5 specific)" evidence=ISS

GO:0043996 "histone acetyltransferase activity (H4-K8 specific)" evidence=ISS

GO:0046972 "histone acetyltransferase activity (H4-K16 specific)" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0WV90	TPR1_ARATH	No assigned EC number	0.5389	0.9537	0.9392	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	1103
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-27
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	1e-14
smart00668	58	smart00668, CTLH, C-terminal to LisH motif	2e-12
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-11
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	4e-10
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-09
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-07
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-06
smart00320	40	smart00320, WD40, WD40 repeats	9e-06
smart00667	34	smart00667, LisH, Lissencephaly type-1-like homolo	1e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	5e-05
PTZ00421	493	PTZ00421, PTZ00421, coronin; Provisional	2e-04
smart00320	40	smart00320, WD40, WD40 repeats	3e-04

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (281), Expect = 4e-27
 Identities = 81/324 (25%), Positives = 126/324 (38%), Gaps = 47/324 (14%)

Query: 331 IEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT 389
           ++G +     + F P    L         TG  D            KVWD+   +     
Sbjct: 5   LKGHTGGVTCVAFSPDGKLLA--------TGSGD---------GTIKVWDL--ETGELLR 45

Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
            L       V  V  S DG+ L    S   ++L+    G   R    +  H   V+ +AF
Sbjct: 46  TLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAF 101

Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG 509
           S P  +I + +   DKTIKVWD  TG    +  GH   V S+      +  F+ S S DG
Sbjct: 102 S-PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFS--PDGTFVASSSQDG 157

Query: 510 KIKAWLYDSLGARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
            IK W  D    +      G       +A+S +G +L S  +   G   L  W+ S G  
Sbjct: 158 TIKLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD--GTIKL--WDLSTGKC 211

Query: 568 KRTYQGLQLQH-NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP 626
             T +G    H N V+ V F      + +  +D  I++WD+   + + T+        N 
Sbjct: 212 LGTLRG----HENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG----HTNS 263

Query: 627 --RICFNKNGTLLAVIANENRIKI 648
              + ++ +G  LA  + +  I+I
Sbjct: 264 VTSLAWSPDGKRLASGSADGTIRI 287

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 89.4 bits (220), Expect = 2e-18
 Identities = 89/415 (21%), Positives = 162/415 (39%), Gaps = 29/415 (6%)

Query: 291 GVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLL 350
           G SL ++   S  SS    +  +    S    P   +  L     S  S+ F P    LL
Sbjct: 22  GPSLNSLSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGE-LL 80

Query: 351 LVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS 409
           L G++ G   LWD+++G+KL                   +L      SV+++   SPDG+
Sbjct: 81  LSGSSDGTIKLWDLDNGEKLIK-----------------SLEGLHDSSVSKLALSSPDGN 123

Query: 410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV 469
            + +A S     +  +   +  +    ++ H  +V  LAFS P  ++       D TIK+
Sbjct: 124 SILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFS-PDGKLLASGSSLDGTIKL 182

Query: 470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG 529
           WD  TG    +  GH  PV SL       +    S S DG I+ W   +        +  
Sbjct: 183 WDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA 589
                 ++S +G  L S  +      + +  + S          L    +SV  V F   
Sbjct: 242 SDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT------LSGHSSSVLSVAFSPD 295

Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKI 648
              + +   D  +++WD+   +LL+++   G       + F+ +G+LL    +++  I++
Sbjct: 296 GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRL 355

Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS 703
            +      +      S N+  +S +P   V  +G  +G+V + +     +   + 
Sbjct: 356 WDLRTGKPLKTLEGHS-NVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLD 409

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 55/240 (22%), Positives = 97/240 (40%), Gaps = 35/240 (14%)

Query: 805  VPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM 863
            V C A S +   L + SG G I ++ + T + + T+   +     +A +  D   +A G 
Sbjct: 12   VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70

Query: 864  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923
             D TI +++  + E +  L GH+  V+ + FS    IL SS  D  I VWDV+     T 
Sbjct: 71   SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE-----TG 125

Query: 924  RSLQT----PDGVMTLAPSETHIQF----HKDQTRFLLVHETHLAIYEAEELTCLKQWFP 975
            + L T     D V ++A S     F     +D T    +      +++     C+     
Sbjct: 126  KCLTTLRGHTDWVNSVAFSPDG-TFVASSSQDGT----IK-----LWDLRTGKCVAT-LT 174

Query: 976  ISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC 1035
              +  ++   FS D   + +S  DGT+ + + S  +    +           H+  +   
Sbjct: 175  GHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTL---------RGHENGVNSV 225

Length = 289

>gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif

 Score = 63.0 bits (154), Expect = 2e-12
 Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 34 FYFDMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDIAK 92
           + + K   ++IL G W++  ++LSS       R S K+ FE+RKQ F E +    + +
Sbjct: 1  EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKLEE 58

Alpha-helical motif of unknown function. Length = 58

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 5/139 (3%)

Query: 804 AVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 862
            V   A S +  ++ S+S  G I L+ + T K + T+   +    S+AF+P D   +   
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLLSS 195

Query: 863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT 922
             D TI +++  + + +  L GH   V  + FS    +L S   D  I VWD+     + 
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTG--EC 253

Query: 923 CRSLQ-TPDGVMTLAPSET 940
            ++L    + V +LA S  
Sbjct: 254 VQTLSGHTNSVTSLAWSPD 272

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 65.0 bits (159), Expect = 3e-11
 Identities = 35/114 (30%), Positives = 54/114 (47%), Gaps = 2/114 (1%)

Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
              V   A S +   L S+S  G I L+ + T K + T+        S+AF+P    + +
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLAS 236

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
            G +D TI +++ R+ E +  L GH+  VT L +S     L S   D  I +WD
Sbjct: 237 -GSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.7 bits (156), Expect = 1e-10
 Identities = 81/459 (17%), Positives = 174/459 (37%), Gaps = 72/459 (15%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAPVY 489
              L +  H  ++  +AFS P  ++ +++   D TIK+WD   G +        H + V 
Sbjct: 56  LSSLLLRGHEDSITSIAFS-PDGEL-LLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS 113

Query: 490 SLCPHAKENIHFIFSIS-VDGKIKAW-LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC 547
            L   + +    + + S +DG +K W L          +      T +A+S +G+ L S 
Sbjct: 114 KLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASG 173

Query: 548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWD 606
            +       +  W+   G    T  G     + VS + F       I +   D  I++WD
Sbjct: 174 SSLD---GTIKLWDLRTGKPLSTLAG---HTDPVSSLAFSPDGGLLIASGSSDGTIRLWD 227

Query: 607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SD 665
           ++  +LL +  +G    ++    F+ +G+LLA  +++  I++ +   S+S+       S 
Sbjct: 228 LSTGKLLRSTLSG--HSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSS 285

Query: 666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS 725
           ++  ++ +P   +  +G ++G+V + +     +   ++++                    
Sbjct: 286 SVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE----------------- 328

Query: 726 LLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ 784
                      +S L+++ +G   +   + +G   +W         + E           
Sbjct: 329 ---------GPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLE----------- 368

Query: 785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPS 843
                               V   + S +   + S S  G + L+ + T   +  +   +
Sbjct: 369 ----------------GHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412

Query: 844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL 882
              TSL F+P D   +A G  D+TI +++ ++S      
Sbjct: 413 SRVTSLDFSP-DGKSLASGSSDNTIRLWDLKTSLKSVSF 450

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 64.0 bits (154), Expect = 2e-10
 Identities = 46/221 (20%), Positives = 93/221 (42%), Gaps = 13/221 (5%)

Query: 811  SKNDAYLFSASGGVISLYIVMT-FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL 869
              +     S+  G + L+ + T  K I T+   S + TSLAF+P    + +    D TI 
Sbjct: 122  GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181

Query: 870  IYNARSSEVISKLEGHSKRVTGLVFS-DALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQ 927
            +++ R+ + +S L GH+  V+ L FS D   ++ S   D  I +WD+     +++  S  
Sbjct: 182  LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGH 241

Query: 928  TPDGVMTLAPSETHIQFHKDQTRFLLVHETH-LAIYEAEELTCLKQWFPISSVPISQATF 986
            +   V +         F  D +          + +++    + L +     S  +    F
Sbjct: 242  SDSVVSS---------FSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAF 292

Query: 987  SCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1027
            S D +++ +   DGT+ + +    ++   +    +  P +S
Sbjct: 293  SPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSS 333

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 63.2 bits (152), Expect = 4e-10
 Identities = 47/218 (21%), Positives = 91/218 (41%), Gaps = 10/218 (4%)

Query: 805  VPCFALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG 862
            V   A S +   L ++    G I L+ + T K + + +     +   +F+P D +++A G
Sbjct: 201  VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSP-DGSLLASG 259

Query: 863  MDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ 921
              D TI +++ RS S ++  L GHS  V  + FS    +L S   D  + +WD++   + 
Sbjct: 260  SSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLL 319

Query: 922  TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI 981
            +  +L+  +G        + + F  D +  +        I   +  T            +
Sbjct: 320  SSLTLKGHEG------PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV 373

Query: 982  SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019
               +FS D R+V +   DGT+ + + S   +   +   
Sbjct: 374  LSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 61.3 bits (147), Expect = 1e-09
 Identities = 83/472 (17%), Positives = 173/472 (36%), Gaps = 76/472 (16%)

Query: 456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
           I ++    D  + + D      +    GH   + S+      +   + S S DG IK W 
Sbjct: 40  ILLLALLSDSLVSLPD----LSSLLLRGHEDSITSIAFS--PDGELLLSGSSDGTIKLWD 93

Query: 516 YDSLGARVD--YDAPGLGCTRMAY-SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
            D+    +           +++A  S +G  +    +S +G   +  W+ S         
Sbjct: 94  LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDG--TVKLWDLSTPGKLIRT- 150

Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN 631
            L+    SV+ + F      + +    D  IK+WD+   + L+T+        +  + F+
Sbjct: 151 -LEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSS--LAFS 207

Query: 632 KNGTLLAVIANENR-IKI--LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV 688
            +G LL    + +  I++  L T +      +G     +   S +     +G+  ++G++
Sbjct: 208 PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGS--SDGTI 265

Query: 689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA 748
            +                                         ++++     T +    +
Sbjct: 266 RL---------------------------------------WDLRSSSSLLRTLSGHSSS 286

Query: 749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF 808
           + ++A +    +        + S++ T ++    +    G        T    +  V   
Sbjct: 287 VLSVAFSPDGKLL------ASGSSDGTVRL----WDLETGKLLSS--LTLKGHEGPVSSL 334

Query: 809 ALSKNDAYLFSASG--GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866
           + S + + L S     G I L+ + T K + T+   S    S++F+P D  V++ G  D 
Sbjct: 335 SFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNV-LSVSFSP-DGRVVSSGSTDG 392

Query: 867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW 918
           T+ +++  +  ++  L+GH+ RVT L FS     L S   D  I +WD+   
Sbjct: 393 TVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTS 444

Length = 466

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 53/203 (26%), Positives = 84/203 (41%), Gaps = 27/203 (13%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
           +TL   SSS +S+ F P    LL  G++ G   LWD+ +G+ L     K           
Sbjct: 278 RTLSGHSSSVLSVAFSP-DGKLLASGSSDGTVRLWDLETGKLLSSLTLK----------- 325

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVND 446
                      V+ + +SPDGSLL    S    ++L+         + L+      NV  
Sbjct: 326 ------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDL----RTGKPLKTLEGHSNVLS 375

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
           ++FS   + +S  +   D T+++WD  TGS   + +GH + V SL          + S S
Sbjct: 376 VSFSPDGRVVS--SGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKS--LASGS 431

Query: 507 VDGKIKAWLYDSLGARVDYDAPG 529
            D  I+ W   +    V +   G
Sbjct: 432 SDNTIRLWDLKTSLKSVSFSPDG 454

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 52.3 bits (126), Expect = 6e-07
 Identities = 28/161 (17%), Positives = 65/161 (40%), Gaps = 11/161 (6%)

Query: 531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK 590
           G T +A+S +G+ L +          +  W+   G + RT +G       V  V      
Sbjct: 11  GVTCVAFSPDGKLLATGSGDGT----IKVWDLETGELLRTLKGHTG---PVRDVAASADG 63

Query: 591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKIL 649
             + +   D  I++WD+   + + T+    G       + F+ +G +L+  + +  IK+ 
Sbjct: 64  TYLASGSSDKTIRLWDLETGECVRTL---TGHTSYVSSVAFSPDGRILSSSSRDKTIKVW 120

Query: 650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
           +      +      +D +  ++ +P  T   +   +G++ +
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL 161

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 51.6 bits (124), Expect = 9e-07
 Identities = 30/130 (23%), Positives = 51/130 (39%), Gaps = 18/130 (13%)

Query: 882  LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941
            L+GH+  VT + FS    +L +  GD  I VWD++   +       T   V         
Sbjct: 5    LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-GPV-------RD 56

Query: 942  IQFHKDQTRFLLVHETHLA-IYEAEELTCLKQWF----PISSVPISQATFSCDCRMVFTS 996
            +    D T            +++ E   C++        +SSV      FS D R++ +S
Sbjct: 57   VAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSV-----AFSPDGRILSSS 111

Query: 997  FVDGTLSIHE 1006
              D T+ + +
Sbjct: 112  SRDKTIKVWD 121

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 48.9 bits (117), Expect = 6e-06
 Identities = 38/180 (21%), Positives = 63/180 (35%), Gaps = 40/180 (22%)

Query: 321 DFPKTVAQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---- 375
           D       T + G +    S+ F P   T +   +  G   LWD+ +G+   +       
Sbjct: 121 DVETGKCLTTLRGHTDWVNSVAFSP-DGTFVASSSQDGTIKLWDLRTGK--CVATLTGHT 177

Query: 376 ------------------------KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL 411
                                   K+WD+   S       +R     VN V +SPDG LL
Sbjct: 178 GEVNSVAFSPDGEKLLSSSSDGTIKLWDL---STGKCLGTLRGHENGVNSVAFSPDGYLL 234

Query: 412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
                   ++++    G        +  H  +V  LA+S   K+  + +   D TI++WD
Sbjct: 235 ASGSEDGTIRVWDLRTG---ECVQTLSGHTNSVTSLAWSPDGKR--LASGSADGTIRIWD 289

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 43.5 bits (103), Expect = 9e-06
 Identities = 15/40 (37%), Positives = 21/40 (52%)

Query: 875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           S E++  L+GH+  VT + FS     L S   D  I +WD
Sbjct: 1   SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif

 Score = 42.8 bits (102), Expect = 1e-05
 Identities = 11/31 (35%), Positives = 18/31 (58%)

Query: 4  LNKDLVFLILQFLNEEGFTESAHMLERESRF 34
             +L  LIL++L   G+ E+A  L++ES  
Sbjct: 2  SRSELNRLILEYLLRNGYEETAETLQKESGL 32

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           +++  L+GH+  VT + FS   N+L S   D  + VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 41.2 bits (97), Expect = 5e-05
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 2/40 (5%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
           +    +  H G V  +AFS     +   +  DD T++VWD
Sbjct: 2   KLLRTLKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional

 Score = 44.9 bits (106), Expect = 2e-04
 Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 8/76 (10%)

Query: 849 LAFNPHDNNVIAIGMDDSTILIYN-------ARSSEVISKLEGHSKRVTGLVF-SDALNI 900
           +AFNP D   +    +D TI+ +           S+ I  L+GH+K+V  + F   A+N+
Sbjct: 81  VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140

Query: 901 LVSSGGDAQIFVWDVD 916
           L S+G D  + VWDV+
Sbjct: 141 LASAGADMVVNVWDVE 156

Length = 493

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD 471
            +  H G V  +AFS   K +   +  DD TIK+WD
Sbjct: 7   TLKGHTGPVTSVAFSPDGKYL--ASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	1103
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0275	508	consensus Conserved WD40 repeat-containing protein	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0319	775	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0318	603	consensus WD40 repeat stress protein/actin interac	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0306	888	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG0291	893	consensus WD40-repeat-containing subunit of the 18	100.0
KOG0271	480	consensus Notchless-like WD40 repeat-containing pr	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG1408	1080	consensus WD40 repeat protein [Function unknown]	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG0272	459	consensus U4/U6 small nuclear ribonucleoprotein Pr	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG1539	910	consensus WD repeat protein [General function pred	100.0
KOG0286	343	consensus G-protein beta subunit [General function	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	100.0
KOG1063	764	consensus RNA polymerase II elongator complex, sub	100.0
KOG0279	315	consensus G protein beta subunit-like protein [Sig	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0296	399	consensus Angio-associated migratory cell protein	100.0
KOG0315	311	consensus G-protein beta subunit-like protein (con	100.0
KOG2106	626	consensus Uncharacterized conserved protein, conta	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
KOG0273	524	consensus Beta-transducin family (WD-40 repeat) pr	100.0
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0316	307	consensus Conserved WD40 repeat-containing protein	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0265	338	consensus U5 snRNP-specific protein-like factor an	100.0
KOG0295	406	consensus WD40 repeat-containing protein [Function	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0293	519	consensus WD40 repeat-containing protein [Function	100.0
KOG0285	460	consensus Pleiotropic regulator 1 [RNA processing	100.0
KOG2048	691	consensus WD40 repeat protein [General function pr	100.0
KOG0263	707	consensus Transcription initiation factor TFIID, s	100.0
KOG0282	503	consensus mRNA splicing factor [Function unknown]	100.0
KOG0284	464	consensus Polyadenylation factor I complex, subuni	100.0
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	100.0
KOG0645	312	consensus WD40 repeat protein [General function pr	100.0
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	100.0
KOG0266	456	consensus WD40 repeat-containing protein [General	99.98
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.98
KOG0282	503	consensus mRNA splicing factor [Function unknown]	99.97
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	99.97
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.97
KOG0316	307	consensus Conserved WD40 repeat-containing protein	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.97
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.97
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.97
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.97
PLN00181	793	protein SPA1-RELATED; Provisional	99.97
KOG0275	508	consensus Conserved WD40 repeat-containing protein	99.97
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.96
KOG1445	1012	consensus Tumor-specific antigen (contains WD repe	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.96
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.96
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.96
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.96
KOG0278	334	consensus Serine/threonine kinase receptor-associa	99.96
KOG0643	327	consensus Translation initiation factor 3, subunit	99.96
KOG0641	350	consensus WD40 repeat protein [General function pr	99.96
PTZ00421	493	coronin; Provisional	99.96
KOG0640	430	consensus mRNA cleavage stimulating factor complex	99.96
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.96
KOG1446	311	consensus Histone H3 (Lys4) methyltransferase comp	99.95
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.95
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.95
KOG0973	942	consensus Histone transcription regulator HIRA, WD	99.95
KOG0310	487	consensus Conserved WD40 repeat-containing protein	99.95
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.95
KOG1407	313	consensus WD40 repeat protein [Function unknown]	99.95
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.95
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.95
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.95
PTZ00420	568	coronin; Provisional	99.95
KOG0313	423	consensus Microtubule binding protein YTM1 (contai	99.95
KOG0283	712	consensus WD40 repeat-containing protein [Function	99.95
KOG2096	420	consensus WD40 repeat protein [General function pr	99.95
KOG0288	459	consensus WD40 repeat protein TipD [General functi	99.94
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.94
PTZ00421	493	coronin; Provisional	99.94
KOG1963	792	consensus WD40 repeat protein [General function pr	99.94
KOG0274	537	consensus Cdc4 and related F-box and WD-40 protein	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0647	347	consensus mRNA export protein (contains WD40 repea	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.94
KOG0305	484	consensus Anaphase promoting complex, Cdc20, Cdh1,	99.94
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.94
KOG0308	735	consensus Conserved WD40 repeat-containing protein	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0772	641	consensus Uncharacterized conserved protein, conta	99.94
KOG0641	350	consensus WD40 repeat protein [General function pr	99.94
KOG0299	479	consensus U3 snoRNP-associated protein (contains W	99.94
KOG0289	506	consensus mRNA splicing factor [General function p	99.94
KOG0268	433	consensus Sof1-like rRNA processing protein (conta	99.93
KOG0294	362	consensus WD40 repeat-containing protein [Function	99.93
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.93
KOG0277	311	consensus Peroxisomal targeting signal type 2 rece	99.93
KOG1274	933	consensus WD40 repeat protein [General function pr	99.93
KOG0300	481	consensus WD40 repeat-containing protein [Function	99.93
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.92
PTZ00420	568	coronin; Provisional	99.92
KOG2096	420	consensus WD40 repeat protein [General function pr	99.92
KOG0301	745	consensus Phospholipase A2-activating protein (con	99.92
KOG1963	792	consensus WD40 repeat protein [General function pr	99.92
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.92
KOG1274	933	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
KOG2055	514	consensus WD40 repeat protein [General function pr	99.91
KOG0639	705	consensus Transducin-like enhancer of split protei	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG1332	299	consensus Vesicle coat complex COPII, subunit SEC1	99.91
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.91
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.9
KOG1273	405	consensus WD40 repeat protein [General function pr	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.9
KOG2055	514	consensus WD40 repeat protein [General function pr	99.9
KOG1036	323	consensus Mitotic spindle checkpoint protein BUB3,	99.9
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.9
KOG0646	476	consensus WD40 repeat protein [General function pr	99.89
KOG1273	405	consensus WD40 repeat protein [General function pr	99.89
KOG0264	422	consensus Nucleosome remodeling factor, subunit CA	99.89
KOG4328	498	consensus WD40 protein [Function unknown]	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.89
KOG0650	733	consensus WD40 repeat nucleolar protein Bop1, invo	99.88
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	99.88
KOG0267	825	consensus Microtubule severing protein katanin p80	99.88
KOG4283	397	consensus Transcription-coupled repair protein CSA	99.88
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.87
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.85
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.85
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.85
KOG0267	825	consensus Microtubule severing protein katanin p80	99.85
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.85
KOG0269	839	consensus WD40 repeat-containing protein [Function	99.84
KOG0321	720	consensus WD40 repeat-containing protein L2DTL [Fu	99.84
KOG2445	361	consensus Nuclear pore complex component (sc Seh1)	99.84
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.84
COG2319	466	FOG: WD40 repeat [General function prediction only	99.83
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.83
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.83
KOG4328	498	consensus WD40 protein [Function unknown]	99.83
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.83
KOG4378	673	consensus Nuclear protein COP1 [Signal transductio	99.82
KOG0302	440	consensus Ribosome Assembly protein [General funct	99.81
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.81
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.81
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.8
KOG1009	434	consensus Chromatin assembly complex 1 subunit B/C	99.8
KOG2919	406	consensus Guanine nucleotide-binding protein [Gene	99.8
KOG1912	1062	consensus WD40 repeat protein [General function pr	99.8
KOG1034	385	consensus Transcriptional repressor EED/ESC/FIE, r	99.8
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.79
KOG0270	463	consensus WD40 repeat-containing protein [Function	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.78
KOG0303	472	consensus Actin-binding protein Coronin, contains	99.77
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.77
KOG4497	447	consensus Uncharacterized conserved protein WDR8,	99.76
KOG4227	609	consensus WD40 repeat protein [General function pr	99.76
KOG0307	1049	consensus Vesicle coat complex COPII, subunit SEC3	99.76
KOG0649	325	consensus WD40 repeat protein [General function pr	99.76
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.76
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.75
KOG1334	559	consensus WD40 repeat protein [General function pr	99.75
KOG0322	323	consensus G-protein beta subunit-like protein GNB1	99.74
KOG0649	325	consensus WD40 repeat protein [General function pr	99.74
KOG0642	577	consensus Cell-cycle nuclear protein, contains WD-	99.74
KOG1524	737	consensus WD40 repeat-containing protein CHE-2 [Ge	99.73
KOG4227	609	consensus WD40 repeat protein [General function pr	99.73
KOG1188	376	consensus WD40 repeat protein [General function pr	99.73
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.73
PRK11028	330	6-phosphogluconolactonase; Provisional	99.73
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.73
KOG0644	1113	consensus Uncharacterized conserved protein, conta	99.72
KOG2110	391	consensus Uncharacterized conserved protein, conta	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.72
KOG1310	758	consensus WD40 repeat protein [General function pr	99.72
KOG1007	370	consensus WD repeat protein TSSC1, WD repeat super	99.71
KOG1188	376	consensus WD40 repeat protein [General function pr	99.71
PRK11028	330	6-phosphogluconolactonase; Provisional	99.7
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.69
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.67
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.66
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	99.66
PRK01742	429	tolB translocation protein TolB; Provisional	99.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.65
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.65
COG4946	668	Uncharacterized protein related to the periplasmic	99.64
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.63
KOG0290	364	consensus Conserved WD40 repeat-containing protein	99.63
KOG1334	559	consensus WD40 repeat protein [General function pr	99.63
KOG0771	398	consensus Prolactin regulatory element-binding pro	99.62
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	99.62
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.61
KOG2139	445	consensus WD40 repeat protein [General function pr	99.6
KOG1587	555	consensus Cytoplasmic dynein intermediate chain [C	99.6
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.6
KOG0974	967	consensus WD-repeat protein WDR6, WD repeat superf	99.59
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.59
PRK01742	429	tolB translocation protein TolB; Provisional	99.59
KOG1310	758	consensus WD40 repeat protein [General function pr	99.59
KOG2139	445	consensus WD40 repeat protein [General function pr	99.58
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.58
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	99.58
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.57
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.56
KOG1523	361	consensus Actin-related protein Arp2/3 complex, su	99.56
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG2321	703	consensus WD40 repeat protein [General function pr	99.55
KOG2111	346	consensus Uncharacterized conserved protein, conta	99.54
PRK05137	435	tolB translocation protein TolB; Provisional	99.54
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.53
PRK03629	429	tolB translocation protein TolB; Provisional	99.53
COG4946	668	Uncharacterized protein related to the periplasmic	99.52
KOG2041	1189	consensus WD40 repeat protein [General function pr	99.52
KOG1272	545	consensus WD40-repeat-containing subunit of the 18	99.51
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
PRK04922	433	tolB translocation protein TolB; Provisional	99.5
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	99.5
PRK02889	427	tolB translocation protein TolB; Provisional	99.5
KOG2394	636	consensus WD40 protein DMR-N9 [General function pr	99.5
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.49
PRK02889	427	tolB translocation protein TolB; Provisional	99.49
KOG2315	566	consensus Predicted translation initiation factor	99.49
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.48
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.47
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	99.46
KOG2314	698	consensus Translation initiation factor 3, subunit	99.46
KOG2315	566	consensus Predicted translation initiation factor	99.45
PRK05137	435	tolB translocation protein TolB; Provisional	99.45
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.44
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.43
KOG2321	703	consensus WD40 repeat protein [General function pr	99.4
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.4
KOG2314	698	consensus Translation initiation factor 3, subunit	99.39
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.39
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.38
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.38
KOG3881	412	consensus Uncharacterized conserved protein [Funct	99.36
PRK01029	428	tolB translocation protein TolB; Provisional	99.35
PRK00178	430	tolB translocation protein TolB; Provisional	99.34
PRK01029	428	tolB translocation protein TolB; Provisional	99.33
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.33
PRK04792	448	tolB translocation protein TolB; Provisional	99.33
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.31
KOG1354	433	consensus Serine/threonine protein phosphatase 2A,	99.31
PRK04792	448	tolB translocation protein TolB; Provisional	99.3
KOG1409	404	consensus Uncharacterized conserved protein, conta	99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.29
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.28
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.28
KOG4547	541	consensus WD40 repeat-containing protein [General	99.22
KOG4547	541	consensus WD40 repeat-containing protein [General	99.2
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.2
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	99.18
KOG2659	228	consensus LisH motif-containing protein [Cytoskele	99.18
KOG0280	339	consensus Uncharacterized conserved protein [Amino	99.11
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.01
PRK04043	419	tolB translocation protein TolB; Provisional	99.0
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.99
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.98
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.98
KOG0280	339	consensus Uncharacterized conserved protein [Amino	98.97
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.92
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.91
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.9
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.88
KOG4190	1034	consensus Uncharacterized conserved protein [Funct	98.88
KOG1064	2439	consensus RAVE (regulator of V-ATPase assembly) co	98.87
PRK04043	419	tolB translocation protein TolB; Provisional	98.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.86
KOG1897	1096	consensus Damage-specific DNA binding complex, sub	98.85
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.84
KOG3914	390	consensus WD repeat protein WDR4 [Function unknown	98.8
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.78
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.77
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.75
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	98.75
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.74
KOG0309	1081	consensus Conserved WD40 repeat-containing protein	98.73
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.72
KOG4532	344	consensus WD40-like repeat containing protein [Gen	98.71
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.71
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.71
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.68
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.68
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.67
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.65
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	98.62
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	98.58
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.57
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.56
PRK02888	635	nitrous-oxide reductase; Validated	98.55
KOG0882	558	consensus Cyclophilin-related peptidyl-prolyl cis-	98.54
KOG2695	425	consensus WD40 repeat protein [General function pr	98.54
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.53
PRK02888	635	nitrous-oxide reductase; Validated	98.52
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.49
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.48
KOG4714	319	consensus Nucleoporin [Nuclear structure]	98.48
KOG4649	354	consensus PQQ (pyrrolo-quinoline quinone) repeat p	98.47
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.46
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.45
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.39
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	98.38
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.38
KOG3621	726	consensus WD40 repeat-containing protein [General	98.37
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	98.37
PF10607	145	CLTH: CTLH/CRA C-terminal to LisH motif domain; In	98.35
KOG0396	389	consensus Uncharacterized conserved protein [Funct	98.27
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	98.25
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.23
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	98.22
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.17
KOG1275	1118	consensus PAB-dependent poly(A) ribonuclease, subu	98.13
KOG2695	425	consensus WD40 repeat protein [General function pr	98.1
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	98.09
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.07
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	98.04
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	98.01
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	98.01
KOG3621	726	consensus WD40 repeat-containing protein [General	97.99
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.95
smart00668	58	CTLH C-terminal to LisH motif. Alpha-helical motif	97.95
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.95
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.91
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.91
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.86
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	97.85
PF08513	27	LisH: LisH; InterPro: IPR013720 The LisH motif is	97.82
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.82
PRK13616	591	lipoprotein LpqB; Provisional	97.82
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	97.82
COG3391	381	Uncharacterized conserved protein [Function unknow	97.79
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	97.77
smart00667	34	LisH Lissencephaly type-1-like homology motif. Alp	97.77
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	97.74
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.74
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.73
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.73
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.72
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.71
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.7
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.7
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.69
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.67
PRK13616	591	lipoprotein LpqB; Provisional	97.62
COG3391	381	Uncharacterized conserved protein [Function unknow	97.6
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.43
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.42
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.4
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.35
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.23
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.22
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.22
KOG1008	783	consensus Uncharacterized conserved protein, conta	97.21
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.17
KOG2817	394	consensus Predicted E3 ubiquitin ligase [Posttrans	97.16
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	97.08
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	97.05
PRK10115	686	protease 2; Provisional	97.04
KOG2395	644	consensus Protein involved in vacuole import and d	97.02
KOG4640	665	consensus Anaphase-promoting complex (APC), subuni	96.99
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	96.95
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.89
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.84
PRK10115	686	protease 2; Provisional	96.77
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.76
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	96.72
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	96.7
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	96.69
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.57
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.51
PHA02713	557	hypothetical protein; Provisional	96.44
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.43
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.42
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.39
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.37
PHA02713	557	hypothetical protein; Provisional	96.36
KOG2395	644	consensus Protein involved in vacuole import and d	96.33
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	96.32
PF14727	418	PHTB1_N: PTHB1 N-terminus	96.31
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	96.25
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	96.21
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.11
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	96.0
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	95.86
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.75
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	95.73
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	95.73
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.65
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.58
KOG1898	1205	consensus Splicing factor 3b, subunit 3 [RNA proce	95.58
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.46
PRK13684	334	Ycf48-like protein; Provisional	95.39
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	95.36
KOG4499	310	consensus Ca2+-binding protein Regucalcin/SMP30 [I	95.35
KOG4441	571	consensus Proteins containing BTB/POZ and Kelch do	95.15
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	95.07
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	95.01
KOG2444	238	consensus WD40 repeat protein [General function pr	95.0
KOG2079	1206	consensus Vacuolar assembly/sorting protein VPS8 [	94.91
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	94.76
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.32
PHA03098	534	kelch-like protein; Provisional	94.17
PHA03098	534	kelch-like protein; Provisional	94.1
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	94.09
KOG2444	238	consensus WD40 repeat protein [General function pr	94.03
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.7
PHA02790	480	Kelch-like protein; Provisional	93.6
cd08044	133	TAF5_NTD2 TAF5_NTD2 is the second conserved N-term	93.56
PRK13684	334	Ycf48-like protein; Provisional	93.46
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.39
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	93.36
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	93.35
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.32
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	93.27
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.2
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	93.2
PF04494	142	TFIID_90kDa: WD40 associated region in TFIID subun	93.17
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	92.94
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	92.87
COG1520	370	FOG: WD40-like repeat [Function unknown]	92.86
PF03022	287	MRJP: Major royal jelly protein; InterPro: IPR0035	92.75
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.6
KOG2377	657	consensus Uncharacterized conserved protein [Funct	92.22
PLN00033	398	photosystem II stability/assembly factor; Provisio	92.1
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	91.84
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	91.59
KOG1916	1283	consensus Nuclear protein, contains WD40 repeats [	91.07
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	90.8
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	90.72
KOG2377	657	consensus Uncharacterized conserved protein [Funct	90.57
PHA02790	480	Kelch-like protein; Provisional	90.41
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	90.3
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	90.19
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	89.87
COG5276	370	Uncharacterized conserved protein [Function unknow	89.82
COG1520	370	FOG: WD40-like repeat [Function unknown]	89.49
COG3292	671	Predicted periplasmic ligand-binding sensor domain	89.38
COG3292	671	Predicted periplasmic ligand-binding sensor domain	89.38
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	89.34
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	89.3
KOG4460	741	consensus Nuclear pore complex, Nup88/rNup84 compo	89.2
PLN00033	398	photosystem II stability/assembly factor; Provisio	89.12
COG4590	733	ABC-type uncharacterized transport system, permeas	88.88
KOG1900	1311	consensus Nuclear pore complex, Nup155 component (	88.76
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	88.55
TIGR03548	323	mutarot_permut cyclically-permuted mutatrotase fam	88.44
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.38
PRK14131	376	N-acetylneuraminic acid mutarotase; Provisional	88.36
KOG3630	1405	consensus Nuclear pore complex, Nup214/CAN compone	87.91
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	87.64
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	87.58
PF13449	326	Phytase-like: Esterase-like activity of phytase	87.27
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	86.99
COG5167	776	VID27 Protein involved in vacuole import and degra	86.39
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	86.23
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	86.16
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	86.13
KOG4659	1899	consensus Uncharacterized conserved protein (Rhs f	85.99
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	85.93
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	85.82
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	85.39
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	85.37
PF05935	477	Arylsulfotrans: Arylsulfotransferase (ASST); Inter	84.68
PRK13614	573	lipoprotein LpqB; Provisional	84.67
KOG2247	615	consensus WD40 repeat-containing protein [General	84.36
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	84.26
PRK13613	599	lipoprotein LpqB; Provisional	84.11
KOG1983	993	consensus Tomosyn and related SNARE-interacting pr	84.1
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	83.58
COG5167	776	VID27 Protein involved in vacuole import and degra	83.53
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	83.04
PRK13615	557	lipoprotein LpqB; Provisional	82.77
PF14781	136	BBS2_N: Ciliary BBSome complex subunit 2, N-termin	81.86
smart00036	302	CNH Domain found in NIK1-like kinases, mouse citro	81.65
PF11725	1774	AvrE: Pathogenicity factor; InterPro: IPR021085 Th	81.14
COG5290	1243	IkappaB kinase complex, IKAP component [Transcript	81.03

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=4.4e-72  Score=553.36  Aligned_cols=492  Identities=21%  Similarity=0.313  Sum_probs=414.8

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhh
Q 001310            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD---MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNF   81 (1103)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~   81 (1103)
                      +-|++||+.|+|..+||.+|+.+||.|||+.+.   ++.|.+++++|+|+.++..+..+. ++++....++.|++.||+|
T Consensus        17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~-~~de~~~~ea~fLv~kQ~f   95 (519)
T KOG0293|consen   17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRIS-FEDERNRKEAMFLVNKQIF   95 (519)
T ss_pred             cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhcc-CcchhhhHHHHHHHHHHHH
Confidence            458999999999999999999999999999885   899999999999999999998764 3335556679999999999


Q ss_pred             hhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCcccccc
Q 001310           82 FEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANPILQGK  161 (1103)
Q Consensus        82 ~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~  161 (1103)
                      ||++..|...+|+.+||+...++. ++.++|++|+.-+..++-....+... .......|++|+++|+++|||+++    
T Consensus        96 LEf~k~~~is~al~~l~~~~~~lr-~~~kk~~el~~sll~sn~~~~ne~~~-~~~~~n~R~~ll~elskyi~p~il----  169 (519)
T KOG0293|consen   96 LEFLKTGSISHALPVLRNPVLYLR-KNKKKFHELASSLLVSNDQFSNEENT-TAQLNNERDKLLDELSKYIPPNIL----  169 (519)
T ss_pred             HHHHhhccHhhhhHhhhcchhhhh-hhHHHHHHHHHHHhccccccccccch-hhhhchhHHHHHHHHHhhCCHhhc----
Confidence            999999999999999999988886 57788999988766544322222111 112357899999999999999999    


Q ss_pred             ccCCCcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCccccCCCCCc
Q 001310          162 LKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLT  241 (1103)
Q Consensus       162 ~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  241 (1103)
                           +|++||++||+||+++|+++|.||| ..+..|||.||.|.+      .+      +|+                 
T Consensus       170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~------~q------ip~-----------------  214 (519)
T KOG0293|consen  170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGR------LQ------IPS-----------------  214 (519)
T ss_pred             -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCc------cc------CCc-----------------
Confidence                 9999999999999999999999999 555689999999987      33      233                 


Q ss_pred             CcccccccccCCCCCCcceeccCCCCCCccccCCccccccccCCcccccCcccCCCCCCCCCcchhhccccccCCccccC
Q 001310          242 DSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSD  321 (1103)
Q Consensus       242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~~~~~~~~~~~~~~~~~~  321 (1103)
                                                                                                      
T Consensus       215 --------------------------------------------------------------------------------  214 (519)
T KOG0293|consen  215 --------------------------------------------------------------------------------  214 (519)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE
Q 001310          322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  401 (1103)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  401 (1103)
                         ...++|..|+++||.+.||++|+ +||+++.|.+..||++.....+.-                ...+.||..+|..
T Consensus       215 ---qt~qil~~htdEVWfl~FS~nGk-yLAsaSkD~Taiiw~v~~d~~~kl----------------~~tlvgh~~~V~y  274 (519)
T KOG0293|consen  215 ---QTWQILQDHTDEVWFLQFSHNGK-YLASASKDSTAIIWIVVYDVHFKL----------------KKTLVGHSQPVSY  274 (519)
T ss_pred             ---hhhhhHhhCCCcEEEEEEcCCCe-eEeeccCCceEEEEEEecCcceee----------------eeeeecccCceEE
Confidence               33467889999999999999999 699999999999999876554221                1238899999999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1103)
Q Consensus       402 ~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  481 (1103)
                      +.||||.+||++|+.+..+.+||+.+|+......  .+|...+.+++|.|||.  .+++|+.|++|..||++ |..+..+
T Consensus       275 i~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~wdlD-gn~~~~W  349 (519)
T KOG0293|consen  275 IMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMWDLD-GNILGNW  349 (519)
T ss_pred             EEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEecCC-cchhhcc
Confidence            9999999999999999999999999998766432  24668999999999999  79999999999999954 5556666


Q ss_pred             ecCC-CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001310          482 EGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1103)
Q Consensus       482 ~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1103)
                      ++-. ..|.++++  +.||.++++.+.|..|++++..+...+. +.....+|++++.|.|++++++.-.    +..+++|
T Consensus       350 ~gvr~~~v~dlai--t~Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~----~qei~LW  422 (519)
T KOG0293|consen  350 EGVRDPKVHDLAI--TYDGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ----DQEIHLW  422 (519)
T ss_pred             cccccceeEEEEE--cCCCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc----cCeeEEe
Confidence            6544 55888888  5588999999999999999988765554 3345568999999999999988765    4459999


Q ss_pred             eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEE
Q 001310          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAV  639 (1103)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~  639 (1103)
                      |++....++.+.||......|.++.-..+..++++||+|+.|+||+..+|+++..+.+|.  ..|++|+|+| +..++|+
T Consensus       423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs--~~vNcVswNP~~p~m~AS  500 (519)
T KOG0293|consen  423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHS--KTVNCVSWNPADPEMFAS  500 (519)
T ss_pred             ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCc--ceeeEEecCCCCHHHhhc
Confidence            999999999999998666667766555666899999999999999999999999999885  4699999999 5678999


Q ss_pred             EECCCeEEEEEcC
Q 001310          640 IANENRIKILETP  652 (1103)
Q Consensus       640 ~~~dg~i~iw~~~  652 (1103)
                      +++||+|+||...
T Consensus       501 asDDgtIRIWg~~  513 (519)
T KOG0293|consen  501 ASDDGTIRIWGPS  513 (519)
T ss_pred             cCCCCeEEEecCC
Confidence            9999999999765

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.3e-61  Score=463.42  Aligned_cols=491  Identities=18%  Similarity=0.279  Sum_probs=401.5

Q ss_pred             hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh----HHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhh
Q 001310            4 LNKDLVFLILQFLNEEGFTESAHMLERESRFYFD----MKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQ   79 (1103)
Q Consensus         4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q   79 (1103)
                      -..||||||.|||+|+.+++++++||+|+++++|    ++.|.+.|.+|+||++++.++++      +++.+.+..||||
T Consensus         6 essdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL------KLP~kkL~dLYEq   79 (508)
T KOG0275|consen    6 ESSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL------KLPDKKLIDLYEQ   79 (508)
T ss_pred             ecchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc------cCchhHHHHHHHH
Confidence            4568999999999999999999999999999998    89999999999999999999988      5666678999999


Q ss_pred             hhhhhhcCCCHHHHHHHHHhhccc---cCCCCHHHHHHHHhhcccccccchhccccccCCChHHHHHHHHHHHHhhhcCc
Q 001310           80 NFFEALDGHDIAKALNILKKDLKD---FAPGNEELFKELAQLLTLDDIRDHELLSKYYGDALSARKNMMLELKQIIEANP  156 (1103)
Q Consensus        80 ~~~Ell~~~~~~~a~~~l~~~l~~---~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~  156 (1103)
                      ..+||+|.++...|..+||+ ..|   +.+.++++|-+|+.||..+.++..+.+.   +..++.|+.   .|.+.+..++
T Consensus        80 ivlEliELREL~tAR~~lRQ-TdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~---dssKEkrRa---~IAQ~ls~EV  152 (508)
T KOG0275|consen   80 IVLELIELRELGTARSLLRQ-TDPMIMLKQIQPERYIRLENLLNRSYFDPREAYG---DSSKEKRRA---VIAQALSGEV  152 (508)
T ss_pred             HHHHHHHHHhhhHHHHHHhc-cCceehhhccChHHHHHHHHHhcccccChhhhcC---cchHHHHHH---HHHHHhcCce
Confidence            99999999999999999997 344   4556899999999999999999888733   245777763   3444444433


Q ss_pred             cccccccCCCcchHHHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCccccC
Q 001310          157 ILQGKLKFPSIKRQRLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFS  236 (1103)
Q Consensus       157 ~~~~~~~~~~~p~~rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~  236 (1103)
                      -        .+||+||..||+||++||+++.+.|..+  ...||..-....                             
T Consensus       153 ~--------VVppSRLlaLlGQaLKWQqHQGLLPPGt--~iDLFRGkAA~K-----------------------------  193 (508)
T KOG0275|consen  153 H--------VVPPSRLLALLGQALKWQQHQGLLPPGT--TIDLFRGKAAMK-----------------------------  193 (508)
T ss_pred             E--------EcChHHHHHHHHHHhhhHhhcCCCCCCc--eeeeccchhhhh-----------------------------
Confidence            3        2899999999999999999997665311  012222000000                             


Q ss_pred             CCCCcCcccccccccCCCCCCcceeccCCCCCCccccCCccccccccCCcccccCcccCCCCCCCCCcchhhccccccCC
Q 001310          237 SSMLTDSAVSFVALSLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGE  316 (1103)
Q Consensus       237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~~~~~~~~~~~~~  316 (1103)
                                                                    ...|..||.+..                      
T Consensus       194 ----------------------------------------------~~~Ee~~Pt~l~----------------------  205 (508)
T KOG0275|consen  194 ----------------------------------------------DQEEERYPTQLA----------------------  205 (508)
T ss_pred             ----------------------------------------------hhHhhhchHHhh----------------------
Confidence                                                          001223443331                      


Q ss_pred             ccccCCccceeEecc-cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCC
Q 001310          317 TSFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP  395 (1103)
Q Consensus       317 ~~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  395 (1103)
                                 +.++ +.+..+.|..|||||+ +|++|+.||.|.+||..+|+..+..++..-|           -+--+
T Consensus       206 -----------r~IKFg~KSh~EcA~FSPDgq-yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd-----------~fMMm  262 (508)
T KOG0275|consen  206 -----------RSIKFGQKSHVECARFSPDGQ-YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQD-----------NFMMM  262 (508)
T ss_pred             -----------hheecccccchhheeeCCCCc-eEeeccccceeeeehhccchhhhhhhhhhhc-----------ceeec
Confidence                       2222 4456789999999999 6999999999999999999987754432111           13347


Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  475 (1103)
                      ..+|.|+.||.|...||+|+.||.|+||.+.+|.|++.+.  +.|+..|+|+.||.|+.  .+++++.|.+++|.-+.+|
T Consensus       263 d~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~tvRiHGlKSG  338 (508)
T KOG0275|consen  263 DDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQTVRIHGLKSG  338 (508)
T ss_pred             ccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccceEEEeccccc
Confidence            8999999999999999999999999999999999988532  38999999999999999  6999999999999999999


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC--ccEEEEEEccC-CCEEEEEecCCC
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMAYSAN-GRRLFSCGTSKE  552 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~~~~s~d-g~~l~~~~~~~~  552 (1103)
                      +++..++||...|+...|  +++|..+++++.||+|++|+..+.++..+++..+  .+|.++..-|. ...+++|..   
T Consensus       339 K~LKEfrGHsSyvn~a~f--t~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNr---  413 (508)
T KOG0275|consen  339 KCLKEFRGHSSYVNEATF--TDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNR---  413 (508)
T ss_pred             hhHHHhcCccccccceEE--cCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcC---
Confidence            999999999999999998  5588999999999999999999999888776543  47788877774 456777754   


Q ss_pred             CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                       .+++++.++. |+.++.+.......+...++..+|.|.++++.++|+.++.|...+|++..++..|..  .+..++-+|
T Consensus       414 -sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk--dvIGl~HHP  489 (508)
T KOG0275|consen  414 -SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK--DVIGLTHHP  489 (508)
T ss_pred             -CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--cccccccCc
Confidence             5569998874 788888876654566777888999999999999999999999999999999988754  578999999


Q ss_pred             CCCEEEEEECCCeEEEEE
Q 001310          633 NGTLLAVIANENRIKILE  650 (1103)
Q Consensus       633 ~g~~l~~~~~dg~i~iw~  650 (1103)
                      ..+.+++-+.||.+++|.
T Consensus       490 HqNllAsYsEDgllKLWk  507 (508)
T KOG0275|consen  490 HQNLLASYSEDGLLKLWK  507 (508)
T ss_pred             ccchhhhhcccchhhhcC
Confidence            999999999999999994

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3e-59  Score=496.96  Aligned_cols=577  Identities=18%  Similarity=0.252  Sum_probs=494.2

Q ss_pred             EEecCCCceEEEEEcCCCcEEEEECCCCCee-eeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCC
Q 001310          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH  418 (1103)
Q Consensus       340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~  418 (1103)
                      ++||++|+ +|++... ..|.+-|+.+++.. ..                  .-.+....+++++.+||+++|++++..+
T Consensus        25 ~~~s~nG~-~L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~   84 (775)
T KOG0319|consen   25 VAWSSNGQ-HLYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ   84 (775)
T ss_pred             eeECCCCC-EEEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence            89999999 6777654 46899999999863 21                  1234567899999999999999999999


Q ss_pred             eEEEEEecCCCccccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecC
Q 001310          419 IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  497 (1103)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  497 (1103)
                      .+++|++.+|+.++   .++. |..||.-++|+|.|.  ++++|+.|+.++|||+..+.+.+.|+||.+.|.++.|++..
T Consensus        85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~  159 (775)
T KOG0319|consen   85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW  159 (775)
T ss_pred             eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence            99999999998777   4556 999999999999997  89999999999999999999999999999999999999998


Q ss_pred             CccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc
Q 001310          498 NIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL  576 (1103)
Q Consensus       498 ~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~  576 (1103)
                      +...|++|..|+++++||+..... ...+..|...+++++|++|+..+++++.    +..+.+||+.+-+..+.+...+ 
T Consensus       160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye-  234 (775)
T KOG0319|consen  160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE-  234 (775)
T ss_pred             chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence            888999999999999999996554 6688889999999999999999999987    6679999998777777766544 


Q ss_pred             cCCceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310          577 QHNSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       577 ~~~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                         .+.++.+-++     +.+++++|.+|.+++||.++++++....... ...+..+...+....++..+.|..+.++|.
T Consensus       235 ---~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~  310 (775)
T KOG0319|consen  235 ---SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDE  310 (775)
T ss_pred             ---heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEc
Confidence               6777777777     6799999999999999999998887665443 233666666666667777788899999999


Q ss_pred             CCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCc
Q 001310          652 PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK  731 (1103)
Q Consensus       652 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~  731 (1103)
                      ++.+....+-+..+.|..+.|-                     .|+.++++.++..+.+|+++..   ...|..+    .
T Consensus       311 ~~l~i~k~ivG~ndEI~Dm~~l---------------------G~e~~~laVATNs~~lr~y~~~---~~~c~ii----~  362 (775)
T KOG0319|consen  311 DELTIVKQIVGYNDEILDMKFL---------------------GPEESHLAVATNSPELRLYTLP---TSYCQII----P  362 (775)
T ss_pred             cccEEehhhcCCchhheeeeec---------------------CCccceEEEEeCCCceEEEecC---CCceEEE----e
Confidence            9999999999999999988886                     5788899999999999999665   3334422    4


Q ss_pred             cccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe
Q 001310          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1103)
Q Consensus       732 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  811 (1103)
                      +|...|.++....+|-.|++++.|.++++|.++.+......                  +    -...+|.+.|.+++++
T Consensus       363 GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~------------------~----a~~~gH~~svgava~~  420 (775)
T KOG0319|consen  363 GHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLC------------------V----AQANGHTNSVGAVAGS  420 (775)
T ss_pred             CchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhh------------------h----hhhcccccccceeeec
Confidence            69999999998888899999999999999998433210000                  0    0122699999999998


Q ss_pred             cCC-CEEEEEc-CCeEEEEEcCCcee-----e----EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001310          812 KND-AYLFSAS-GGVISLYIVMTFKT-----I----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1103)
Q Consensus       812 ~d~-~~l~~~~-dg~i~iwd~~~~~~-----~----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1103)
                      ..+ .++++++ |.++++|++...+.     .    .+...|...|++++++| +.+++|+|+.|++.+||+++......
T Consensus       421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~  499 (775)
T KOG0319|consen  421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG  499 (775)
T ss_pred             ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence            765 6777777 89999999975211     1    12346899999999999 88999999999999999999999999


Q ss_pred             EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeE
Q 001310          881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  959 (1103)
Q Consensus       881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v  959 (1103)
                      ++.||...|.++.|+|..+.|||+|.|++|+||.+++..     +++++.||..   .|..+.|-.+|+.|++ +.||-+
T Consensus       500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fS-----ClkT~eGH~~---aVlra~F~~~~~qliS~~adGli  571 (775)
T KOG0319|consen  500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFS-----CLKTFEGHTS---AVLRASFIRNGKQLISAGADGLI  571 (775)
T ss_pred             EeeCCccceEEEEeccccceeEeccCCceEEEEEeccce-----eeeeecCccc---eeEeeeeeeCCcEEEeccCCCcE
Confidence            999999999999999999999999999999999999955     8889999987   8999999999999998 599999


Q ss_pred             EEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      ++|++.+++|..+ +..|+..|++++.++++.+++||+.||.|.+|.=.|.
T Consensus       572 KlWnikt~eC~~t-lD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te  621 (775)
T KOG0319|consen  572 KLWNIKTNECEMT-LDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE  621 (775)
T ss_pred             EEEeccchhhhhh-hhhccceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence            9999999999998 7899999999999999999999999999999975553

>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.8e-56  Score=474.36  Aligned_cols=589  Identities=13%  Similarity=0.177  Sum_probs=480.5

Q ss_pred             ccc-CCCCCCCCCcchhhccccccCCccccCCccce-eE-ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC
Q 001310          292 VSL-KNIPDYSPKSSLKKEMFQSFGETSFSDFPKTV-AQ-TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ  368 (1103)
Q Consensus       292 ~~~-~s~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~-~~-~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~  368 (1103)
                      ++| |.-..|++++..+......... .++.-+... +. .-.+-.+.+++++.+||++ +|++++....+++|++.+|+
T Consensus        18 piYtGG~~~~s~nG~~L~t~~~d~Vi-~idv~t~~~~l~s~~~ed~d~ita~~l~~d~~-~L~~a~rs~llrv~~L~tgk   95 (775)
T KOG0319|consen   18 PIYTGGPVAWSSNGQHLYTACGDRVI-IIDVATGSIALPSGSNEDEDEITALALTPDEE-VLVTASRSQLLRVWSLPTGK   95 (775)
T ss_pred             ceecCCceeECCCCCEEEEecCceEE-EEEccCCceecccCCccchhhhheeeecCCcc-EEEEeeccceEEEEEcccch
Confidence            344 4458888888887766543110 111112222 11 1234567899999999998 68999999999999999998


Q ss_pred             eeeeeeeeEeeccccccceeeeeccC-CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEE
Q 001310          369 KLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL  447 (1103)
Q Consensus       369 ~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~  447 (1103)
                      .++.                   ++. |+++|.-++|+|.|..||+|+.|+.++|||+..+.+..   .|+||.+.|.++
T Consensus        96 ~irs-------------------wKa~He~Pvi~ma~~~~g~LlAtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl  153 (775)
T KOG0319|consen   96 LIRS-------------------WKAIHEAPVITMAFDPTGTLLATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSL  153 (775)
T ss_pred             HhHh-------------------HhhccCCCeEEEEEcCCCceEEeccccceEEEEEeeCCEEEE---EecCCCceEEEE
Confidence            8765                   444 99999999999999999999999999999999987666   799999999999


Q ss_pred             EEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec
Q 001310          448 AFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1103)
Q Consensus       448 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  526 (1103)
                      .|.|+-....|++|+.|+++++||+.+.. ++.++..|.+.|+++++.+  |+..+++++.|..+.+||+..-+.....+
T Consensus       154 ~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp  231 (775)
T KOG0319|consen  154 LFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLP  231 (775)
T ss_pred             EeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeecc--CCceEEEeccCcEEEEeehhhhhhhheec
Confidence            99999887789999999999999999654 4888999999999999954  67899999999999999996655554444


Q ss_pred             CCCccEEEEEEccC-----CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001310          527 APGLGCTRMAYSAN-----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1103)
Q Consensus       527 ~~~~~i~~~~~s~d-----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  601 (1103)
                      .. ..+.++.+-++     |.++++++.    ++.+++||..+++.+.......  ...+..+...+....++....|..
T Consensus       232 ~y-e~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~~~~~~~~~~~--~~e~~~~~~~~~~~~~l~vtaeQn  304 (775)
T KOG0319|consen  232 LY-ESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESGKCVYKQRQSD--SEEIDHLLAIESMSQLLLVTAEQN  304 (775)
T ss_pred             hh-hheeeEEEechhcCCcceEEEEecC----CceEEEEecccchhhhhhccCC--chhhhcceeccccCceEEEEccce
Confidence            32 35666677666     668888875    6779999999998876665543  233666666677778888889999


Q ss_pred             EEEEECCCCeeEEEEcCCCCCCCCceEEEe-cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceee
Q 001310          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1103)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  680 (1103)
                      +.++|.++.+....+-+..  ..|..++|- |+.+++++++..+.+++|+..+..+. .+.+|.+.|.++...       
T Consensus       305 l~l~d~~~l~i~k~ivG~n--dEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~-ii~GH~e~vlSL~~~-------  374 (775)
T KOG0319|consen  305 LFLYDEDELTIVKQIVGYN--DEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQ-IIPGHTEAVLSLDVW-------  374 (775)
T ss_pred             EEEEEccccEEehhhcCCc--hhheeeeecCCccceEEEEeCCCceEEEecCCCceE-EEeCchhheeeeeec-------
Confidence            9999999999988887653  458888875 67899999999999999998887666 888999999888743       


Q ss_pred             eeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCC-cEEEEeecCceEE
Q 001310          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHL  759 (1103)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~  759 (1103)
                                     ..|.++++++.|+++++|.++....  .........+|.+.|.+++++..+ ..+++++.|++++
T Consensus       375 ---------------~~g~llat~sKD~svilWr~~~~~~--~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK  437 (775)
T KOG0319|consen  375 ---------------SSGDLLATGSKDKSVILWRLNNNCS--KSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLK  437 (775)
T ss_pred             ---------------ccCcEEEEecCCceEEEEEecCCcc--hhhhhhhhcccccccceeeecccCccEEEEecCCceEE
Confidence                           4577899999999999998832211  111122336799999999998766 4678888999999


Q ss_pred             EeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEE
Q 001310          760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT  838 (1103)
Q Consensus       760 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~  838 (1103)
                      +|+++..+....        ..         ..........|...|+|++++|+.+++|+|+ |.+.+||+++.+....+
T Consensus       438 ~W~l~~s~~~~~--------~~---------~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~v  500 (775)
T KOG0319|consen  438 LWDLPKSKETAF--------PI---------VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGV  500 (775)
T ss_pred             EecCCCcccccc--------cc---------eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEE
Confidence            999987321000        01         1111122335999999999999999999999 89999999999999999


Q ss_pred             ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 001310          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  918 (1103)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~  918 (1103)
                      +.+|...|.++.|+| ..+.+|+++.|++|+||.+.+..++++|.||+..|..+.|-.+|+.|+|++.||.|++|+++++
T Consensus       501 LsGH~RGvw~V~Fs~-~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~  579 (775)
T KOG0319|consen  501 LSGHTRGVWCVSFSK-NDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTN  579 (775)
T ss_pred             eeCCccceEEEEecc-ccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccch
Confidence            999999999999999 7889999999999999999999999999999999999999999999999999999999999997


Q ss_pred             ceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCC
Q 001310          919 GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEE  966 (1103)
Q Consensus       919 ~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~  966 (1103)
                      +     +...+..|..   .|.+++.+|.+.++++ +.|+.|.+|.=.+
T Consensus       580 e-----C~~tlD~H~D---rvWaL~~~~~~~~~~tgg~Dg~i~~wkD~T  620 (775)
T KOG0319|consen  580 E-----CEMTLDAHND---RVWALSVSPLLDMFVTGGGDGRIIFWKDVT  620 (775)
T ss_pred             h-----hhhhhhhccc---eeEEEeecCccceeEecCCCeEEEEeecCc
Confidence            6     7778888887   9999999999999998 4999999997544

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.2e-52  Score=429.08  Aligned_cols=576  Identities=15%  Similarity=0.196  Sum_probs=464.7

Q ss_pred             ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1103)
Q Consensus       337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~  416 (1103)
                      -.-+.-.|.|+.+|.+.+  ..|.+-++++......                   +.+|...++-..|||.|-|+|+|..
T Consensus        21 ~~~ig~dpkgd~ilY~nG--ksv~ir~i~~~~~~~i-------------------YtEH~~~vtVAkySPsG~yiASGD~   79 (603)
T KOG0318|consen   21 PIIIGGDPKGDNILYTNG--KSVIIRNIDNPASVDI-------------------YTEHAHQVTVAKYSPSGFYIASGDV   79 (603)
T ss_pred             ceEeccCCCCCeEEEeCC--CEEEEEECCCccceee-------------------eccccceeEEEEeCCCceEEeecCC
Confidence            344556788888887755  6788888887765433                   7889999999999999999999999


Q ss_pred             CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEE--cCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1103)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~--~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1103)
                      .|.|+|||....+.+. ..+++.-.++|..++|++|+++  ++..  +.++..+++-.++|..+..+.||...|.++.|-
T Consensus        80 sG~vRIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~DSG~SvGei~GhSr~ins~~~K  156 (603)
T KOG0318|consen   80 SGKVRIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWDSGNSVGEITGHSRRINSVDFK  156 (603)
T ss_pred             cCcEEEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEecCCCccceeeccceeEeeeecc
Confidence            9999999998744332 2356677889999999999996  4433  344445555556899999999999999999997


Q ss_pred             ecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecc
Q 001310          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1103)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1103)
                      |+.. -++++|+.|++|.+|+-...+-...+..|..-|.++.|+|||.++++++.    |+.+++||-.+|+.+..+...
T Consensus       157 psRP-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~  231 (603)
T KOG0318|consen  157 PSRP-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDS  231 (603)
T ss_pred             CCCc-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCC
Confidence            7643 58999999999999987777777788889999999999999999999987    667999999999999999966


Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC-CCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP-ENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      ..|.+.|.+++|+||+.++++++.|.+++|||+.+.+++.++....... ....+.|.  ...|++.+.+|.|.+++...
T Consensus       232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d  309 (603)
T KOG0318|consen  232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSD  309 (603)
T ss_pred             CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccC
Confidence            6677999999999999999999999999999999999999987654311 12344554  56899999999999999999


Q ss_pred             CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccc
Q 001310          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  733 (1103)
Q Consensus       654 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  733 (1103)
                      ...+..+.+|...|+++..+                      +|++++.+++.||.|.-|+...+.....     ....|
T Consensus       310 ~~~~~~i~GHnK~ITaLtv~----------------------~d~~~i~SgsyDG~I~~W~~~~g~~~~~-----~g~~h  362 (603)
T KOG0318|consen  310 PSVLKVISGHNKSITALTVS----------------------PDGKTIYSGSYDGHINSWDSGSGTSDRL-----AGKGH  362 (603)
T ss_pred             CChhheecccccceeEEEEc----------------------CCCCEEEeeccCceEEEEecCCcccccc-----ccccc
Confidence            99999999999999999997                      7889999999999999999876544432     23458


Q ss_pred             cccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC
Q 001310          734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  813 (1103)
Q Consensus       734 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  813 (1103)
                      ...|.+++.+..+. +++.+.|.++++.++..+......                  .  .+     ......+++..+|
T Consensus       363 ~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~------------------~--~~-----lg~QP~~lav~~d  416 (603)
T KOG0318|consen  363 TNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE------------------V--VK-----LGSQPKGLAVLSD  416 (603)
T ss_pred             cceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc------------------e--ee-----cCCCceeEEEcCC
Confidence            99999999887666 788888889988776443220000                  0  01     2334458899999


Q ss_pred             CCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE--EEeccCCCCEEE
Q 001310          814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGHSKRVTG  891 (1103)
Q Consensus       814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h~~~V~~  891 (1103)
                      +.+++.+.++.|.+..-.++  +.++. ..-...++|++| ++..+|+|+.||.|+||.+..++..  ..+..|.++|++
T Consensus       417 ~~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~  492 (603)
T KOG0318|consen  417 GGTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITD  492 (603)
T ss_pred             CCEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeecccCCceE
Confidence            88888888766666542222  22222 334678999999 9999999999999999999976533  455679999999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEE
Q 001310          892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL  970 (1103)
Q Consensus       892 l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~  970 (1103)
                      +++|||+.+||++...+.+.+||+.+.+......    .-|.   +.|.+++|||+..++|+| -|..|.||+++.....
T Consensus       493 vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w----~FHt---akI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~  565 (603)
T KOG0318|consen  493 VAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW----AFHT---AKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKH  565 (603)
T ss_pred             EEECCCCcEEEEeccCCcEEEEEcccCceeccee----eeee---eeEEEEEeCCCceEEEeccccceEEEEEccChhhh
Confidence            9999999999999999999999999977532111    1122   379999999999999996 8999999999987766


Q ss_pred             EEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      ......|...|+.+.|- |...|++.+.|..|++|++.
T Consensus       566 i~iknAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~  602 (603)
T KOG0318|consen  566 IIIKNAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT  602 (603)
T ss_pred             eEeccccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence            66678898889999995 45678889999999999974

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=3.3e-51  Score=435.43  Aligned_cols=604  Identities=17%  Similarity=0.284  Sum_probs=458.9

Q ss_pred             cccCCccceeEecc-cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC
Q 001310          318 SFSDFPKTVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1103)
Q Consensus       318 ~~~~~p~~~~~~l~-~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  396 (1103)
                      ++.++-+..-.+|. .+...|++++.||+|. +|++....|...+-++.....++.++|                    +
T Consensus        38 sv~dLknN~S~Tl~~e~~~NI~~ialSp~g~-lllavdE~g~~~lvs~~~r~Vlh~f~f--------------------k   96 (893)
T KOG0291|consen   38 SVFDLKNNKSYTLPLETRYNITRIALSPDGT-LLLAVDERGRALLVSLLSRSVLHRFNF--------------------K   96 (893)
T ss_pred             EEEEccCCcceeEEeecCCceEEEEeCCCce-EEEEEcCCCcEEEEecccceeeEEEee--------------------c
Confidence            33444444444543 5567999999999997 677778889999999998888877554                    4


Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc-----cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      .+|.|+.|||||+++|+|.. +.+.||.......     +....+..+|...|.++.|+.|.+  ++++|+.|.++++|+
T Consensus        97 ~~v~~i~fSPng~~fav~~g-n~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~  173 (893)
T KOG0291|consen   97 RGVGAIKFSPNGKFFAVGCG-NLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFG  173 (893)
T ss_pred             CccceEEECCCCcEEEEEec-ceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEE
Confidence            78999999999999999854 4699998754322     223446778999999999999999  899999999999999


Q ss_pred             CCCCce--eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310          472 AVTGSR--TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       472 ~~~~~~--~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      ++..+.  .+.+.+|.+.|.++-|.  .+...+++.+.||.+.+|..+.......-. ..        ..+|.--.-.-.
T Consensus       174 v~~~k~~~~~~l~gHkd~VvacfF~--~~~~~l~tvskdG~l~~W~~~~~P~~~~~~-~k--------d~eg~~d~~~~~  242 (893)
T KOG0291|consen  174 VDGNKNLFTYALNGHKDYVVACFFG--ANSLDLYTVSKDGALFVWTCDLRPPELDKA-EK--------DEEGSDDEEMDE  242 (893)
T ss_pred             eccccccceEeccCCCcceEEEEec--cCcceEEEEecCceEEEEEecCCCcccccc-cc--------cccccccccccc
Confidence            987666  57789999999988874  466789999999999999876431111000 00        001100000000


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                      +++....-..|-.    ..+.+-...  ...|++.+|++..+.|++|-..|...+|.+....+++.+....  ..|..++
T Consensus       243 ~~Eek~~~~~~~k----~~k~~ln~~--~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSis~--~~I~t~~  314 (893)
T KOG0291|consen  243 DGEEKTHKIFWYK----TKKHYLNQN--SSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSISD--QKILTVS  314 (893)
T ss_pred             cchhhhcceEEEE----EEeeeeccc--ccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeeccc--ceeeEEE
Confidence            0010000112211    001111111  2679999999999999999999999999999999999998653  3589999


Q ss_pred             EecCCCEEEEEECC-CeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310          630 FNKNGTLLAVIANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1103)
Q Consensus       630 ~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1103)
                      |+..|.+++.|+.. |.+.+|+..+...+                                                   
T Consensus       315 ~N~tGDWiA~g~~klgQLlVweWqsEsYV---------------------------------------------------  343 (893)
T KOG0291|consen  315 FNSTGDWIAFGCSKLGQLLVWEWQSESYV---------------------------------------------------  343 (893)
T ss_pred             ecccCCEEEEcCCccceEEEEEeecccee---------------------------------------------------
Confidence            99999999999875 78999988754322                                                   


Q ss_pred             ccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1103)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1103)
                                         +..++|...+.+++++|||+++++|+.||.|+|||                      ..+|
T Consensus       344 -------------------lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn----------------------~~Sg  382 (893)
T KOG0291|consen  344 -------------------LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN----------------------TQSG  382 (893)
T ss_pred             -------------------eeccccccceeeEEECCCCcEEEeccCCCcEEEEe----------------------ccCc
Confidence                               22345788899999999999999999999888776                      5667


Q ss_pred             CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCC-CCeeEEEEcCCCCCEEEEEeCCC
Q 001310          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDS  866 (1103)
Q Consensus       789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg  866 (1103)
                      .|+.++.    .|.+.|+.+.|+..|+.+++.+ ||+|+.||+..++..+++..+. ....|++..| .|.++++|+.|.
T Consensus       383 fC~vTFt----eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~-sGelV~AG~~d~  457 (893)
T KOG0291|consen  383 FCFVTFT----EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDP-SGELVCAGAQDS  457 (893)
T ss_pred             eEEEEec----cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcC-CCCEEEeeccce
Confidence            7787765    4999999999999999999998 9999999999999999998655 3678899999 899999999887


Q ss_pred             -eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001310          867 -TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  945 (1103)
Q Consensus       867 -~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs  945 (1103)
                       .|++|++++|+.+..+.||.++|.+++|+|+|..|||+|.|++|++||+-.... ....++...       .+..++|+
T Consensus       458 F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~-~vEtl~i~s-------dvl~vsfr  529 (893)
T KOG0291|consen  458 FEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSG-TVETLEIRS-------DVLAVSFR  529 (893)
T ss_pred             EEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCc-eeeeEeecc-------ceeEEEEc
Confidence             899999999999999999999999999999999999999999999999976421 111222222       58999999


Q ss_pred             CCCCEEEEE-eCCeEEEEECCCceEEEEee------C-------------CCCcCeEEEEEccCCCEEEEEecCCcEEEE
Q 001310          946 KDQTRFLLV-HETHLAIYEAEELTCLKQWF------P-------------ISSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1103)
Q Consensus       946 ~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~------~-------------~h~~~v~~l~fs~dg~~l~t~~~dg~v~vW 1005 (1103)
                      |||+.||++ -||.|.+||+..+..+..+-      .             ......+.+++|+||..+++||....|++|
T Consensus       530 PdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY  609 (893)
T KOG0291|consen  530 PDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIY  609 (893)
T ss_pred             CCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEE
Confidence            999999995 89999999998776653311      0             125788999999999999999999999999


Q ss_pred             eCCCceeEEeeccccccCCC---------------C----CC-----Cceee-----------EeeccCCceeeEEEEEC
Q 001310         1006 EASNLEVQCRILSTAYLRPT---------------T----SH-----DKILC-----------FCYCSCLHVYPHAIAAH 1050 (1103)
Q Consensus      1006 d~~~~~~~~~~~~~~~~~~~---------------~----~~-----~~~~~-----------~~~~~~~~v~~~~~~~~ 1050 (1103)
                      ++.++-++++|..+....-.               .    +.     ...+-           -.+.....|...++.|+
T Consensus       610 ~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fs  689 (893)
T KOG0291|consen  610 DVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFS  689 (893)
T ss_pred             ECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEEC
Confidence            99999998887733321110               0    00     00000           00122335777899999


Q ss_pred             CCCCcEEEEEecCCcEEEEcc
Q 001310         1051 PLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1051 p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      |. |+-+++++..| |.||.+
T Consensus       690 Pt-graFAaatTEG-l~IYsl  708 (893)
T KOG0291|consen  690 PT-GRAFAAATTEG-LLIYSL  708 (893)
T ss_pred             CC-cCeeeeecccc-eEEEec
Confidence            99 89999999888 677776

>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]

Probab=100.00  E-value=1.4e-49  Score=406.46  Aligned_cols=541  Identities=12%  Similarity=0.200  Sum_probs=433.2

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      ...+.+|...++-..|||.|- ++|+|...|+|+|||....+.+...+|+                 .-.++|..++|++
T Consensus        52 ~~iYtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKnef~-----------------v~aG~I~Di~Wd~  113 (603)
T KOG0318|consen   52 VDIYTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNEFQ-----------------VLAGPIKDISWDF  113 (603)
T ss_pred             eeeeccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeeeee-----------------ecccccccceeCC
Confidence            466789999999999999997 7999999999999999876655544433                 3568999999999


Q ss_pred             CCCEEEEEeCC--CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          407 DGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       407 dg~~las~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      |+++|++.+..  +..+++-+.+|..+.   .+.||...|++++|-|.... .++||++|++|.+|+-.--+-..+++.|
T Consensus       114 ds~RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~H  189 (603)
T KOG0318|consen  114 DSKRIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREH  189 (603)
T ss_pred             CCcEEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeeccccc
Confidence            99999887543  334444444554455   68899999999999987665 8999999999999985555666778889


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1103)
                      ...|.++.|+|  ||.++++++.||.+.+||-.+++....+.   .|.+.|.+++|+||++.+++++.    +..++|||
T Consensus       190 skFV~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWd  263 (603)
T KOG0318|consen  190 SKFVNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWD  263 (603)
T ss_pred             ccceeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEE
Confidence            99999999955  78999999999999999999999988887   78889999999999999999987    55699999


Q ss_pred             CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      +.+.++++++.....-......+.|.  +..|++.+.+|+|.+++...+..+..+.+|.  ..|++++.+||+++|++|+
T Consensus       264 Vs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHn--K~ITaLtv~~d~~~i~Sgs  339 (603)
T KOG0318|consen  264 VSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHN--KSITALTVSPDGKTIYSGS  339 (603)
T ss_pred             eeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCChhheecccc--cceeEEEEcCCCCEEEeec
Confidence            99999999987654222344455564  5689999999999999999999888888774  5699999999999999999


Q ss_pred             CCCeEEEEEcCCCCeeEec-cccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCC
Q 001310          642 NENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  720 (1103)
Q Consensus       642 ~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~  720 (1103)
                      .||.|.-|+...+..-+.. +.|...|.+++.+                       +...+++.+.|.++++.++.....
T Consensus       340 yDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~-----------------------~~~~~~t~g~Dd~l~~~~~~~~~~  396 (603)
T KOG0318|consen  340 YDGHINSWDSGSGTSDRLAGKGHTNQIKGMAAS-----------------------ESGELFTIGWDDTLRVISLKDNGY  396 (603)
T ss_pred             cCceEEEEecCCccccccccccccceEEEEeec-----------------------CCCcEEEEecCCeEEEEecccCcc
Confidence            9999999999988665443 6788888877775                       235577888889998887654332


Q ss_pred             ccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCC
Q 001310          721 SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN  800 (1103)
Q Consensus       721 ~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  800 (1103)
                      .....+.+.     ..-.+++..+++..++.+...+.+.+-+...                         +...     .
T Consensus       397 t~~~~~~lg-----~QP~~lav~~d~~~avv~~~~~iv~l~~~~~-------------------------~~~~-----~  441 (603)
T KOG0318|consen  397 TKSEVVKLG-----SQPKGLAVLSDGGTAVVACISDIVLLQDQTK-------------------------VSSI-----P  441 (603)
T ss_pred             cccceeecC-----CCceeEEEcCCCCEEEEEecCcEEEEecCCc-------------------------ceee-----c
Confidence            222222221     2233788888887777776665554432211                         1111     1


Q ss_pred             CCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310          801 SQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1103)
                      ......++|++|+++.+|+|+ |+.+++|.+......  ..+..|.++|++++||| |+.+||+|+..+.+.+||+.+.+
T Consensus       442 ~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~a~iT~vaySp-d~~yla~~Da~rkvv~yd~~s~~  520 (603)
T KOG0318|consen  442 IGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHRAAITDVAYSP-DGAYLAAGDASRKVVLYDVASRE  520 (603)
T ss_pred             cccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeeecccCCceEEEECC-CCcEEEEeccCCcEEEEEcccCc
Confidence            455778999999999999998 799999999865533  34566999999999999 99999999999999999999987


Q ss_pred             eEE-EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeC
Q 001310          878 VIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  956 (1103)
Q Consensus       878 ~~~-~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d  956 (1103)
                      ... .+.-|+..|.+++|||+.+++|||+-|-.|.||+++...    ..+.....|..   .|..+.|-.+...+-+|.|
T Consensus       521 ~~~~~w~FHtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~----~~i~iknAH~~---gVn~v~wlde~tvvSsG~D  593 (603)
T KOG0318|consen  521 VKTNRWAFHTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPA----KHIIIKNAHLG---GVNSVAWLDESTVVSSGQD  593 (603)
T ss_pred             eecceeeeeeeeEEEEEeCCCceEEEeccccceEEEEEccChh----hheEecccccc---CceeEEEecCceEEeccCc
Confidence            643 334499999999999999999999999999999998733    12444555554   6999999998888888999


Q ss_pred             CeEEEEECC
Q 001310          957 THLAIYEAE  965 (1103)
Q Consensus       957 ~~v~iwd~~  965 (1103)
                      ..|++|.+.
T Consensus       594 a~iK~W~v~  602 (603)
T KOG0318|consen  594 ANIKVWNVT  602 (603)
T ss_pred             ceeEEeccc
Confidence            999999864

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=8.4e-49  Score=416.95  Aligned_cols=508  Identities=14%  Similarity=0.218  Sum_probs=400.7

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      +.+|+|+.-+||.- +||+|..||.|+||+..++..+.+                   +.||...|+++.|...|..||+
T Consensus        65 k~evt~l~~~~d~l-~lAVGYaDGsVqif~~~s~~~~~t-------------------fngHK~AVt~l~fd~~G~rlaS  124 (888)
T KOG0306|consen   65 KAEVTCLRSSDDIL-LLAVGYADGSVQIFSLESEEILIT-------------------FNGHKAAVTTLKFDKIGTRLAS  124 (888)
T ss_pred             cceEEEeeccCCcc-eEEEEecCceEEeeccCCCceeee-------------------ecccccceEEEEEcccCceEee
Confidence            35899999999986 899999999999999998876654                   8899999999999999999999


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  493 (1103)
                      |+.|+.|.+||+-....+.   .+.||...|+.+-|..+.+  ++++.+.|+.|++||+++..|..+.-.|.+.++++++
T Consensus       125 GskDt~IIvwDlV~E~Gl~---rL~GHkd~iT~~~F~~~~~--~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~  199 (888)
T KOG0306|consen  125 GSKDTDIIVWDLVGEEGLF---RLRGHKDSITQALFLNGDS--FLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVL  199 (888)
T ss_pred             cCCCccEEEEEeccceeeE---EeecchHHHhHHhccCCCe--EEEEeccCceEEEEecccceeeeEEecccceEEEEEE
Confidence            9999999999998754333   7899999999999998777  8999999999999999999999999999999999999


Q ss_pred             eecCCccEEEEEECCCeEEEEEcCCCCee------------E-EecCCCccEEEEEEccCCCEEEEEecCC---------
Q 001310          494 HAKENIHFIFSISVDGKIKAWLYDSLGAR------------V-DYDAPGLGCTRMAYSANGRRLFSCGTSK---------  551 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------------~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~---------  551 (1103)
                      .+    ..+++++.|+.+++|++......            - ......+....++..++++++++-+.+.         
T Consensus       200 ~~----~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s  275 (888)
T KOG0306|consen  200 DE----KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRS  275 (888)
T ss_pred             ec----ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccCCceeEEeecCcccEEEEecchhhhhheeecC
Confidence            54    58999999999999998211000            0 0000111122233333334333332111         


Q ss_pred             -----------------------------------------------------------------CCceeEEEEeCCC-C
Q 001310          552 -----------------------------------------------------------------EGESFLVEWNESE-G  565 (1103)
Q Consensus       552 -----------------------------------------------------------------~~~~~i~iwd~~~-~  565 (1103)
                                                                                       -.++.+..|.+.. +
T Consensus       276 ~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~  355 (888)
T KOG0306|consen  276 KEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSG  355 (888)
T ss_pred             HHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCC
Confidence                                                                             0022344444332 1


Q ss_pred             ee--------EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001310          566 AI--------KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1103)
Q Consensus       566 ~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l  637 (1103)
                      ..        ...+.+|.   ..|++++++.+...+++|+ .+.+++|+..+.+++.++...    .+.+..|-|.++++
T Consensus       356 ~~~p~~~~~~~i~~~GHR---~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~----y~l~~~Fvpgd~~I  427 (888)
T KOG0306|consen  356 KTSPEADRTSNIEIGGHR---SDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCG----YILASKFVPGDRYI  427 (888)
T ss_pred             CCCccccccceeeeccch---hheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccc----cEEEEEecCCCceE
Confidence            11        12344555   8999999998876555554 688999999999999999754    47889999999999


Q ss_pred             EEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310          638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                      ++|...|.+.+||+.+...+.+++.|.+.++.++.+                      ||++.+++++.|.+|++|+...
T Consensus       428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~----------------------pD~~g~vT~saDktVkfWdf~l  485 (888)
T KOG0306|consen  428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLS----------------------PDNKGFVTGSADKTVKFWDFKL  485 (888)
T ss_pred             EEeccCCceEEEEeehhhhhhhhhccccceeeeeec----------------------CCCCceEEecCCcEEEEEeEEE
Confidence            999999999999999998888888888888777775                      6777777788888888887652


Q ss_pred             cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCC
Q 001310          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  797 (1103)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1103)
                      ....         ++....            ++..-..                                    .+.   
T Consensus       486 ~~~~---------~gt~~k------------~lsl~~~------------------------------------rtL---  505 (888)
T KOG0306|consen  486 VVSV---------PGTQKK------------VLSLKHT------------------------------------RTL---  505 (888)
T ss_pred             Eecc---------Ccccce------------eeeeccc------------------------------------eEE---
Confidence            1100         000000            0000000                                    011   


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001310          798 DSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1103)
Q Consensus       798 ~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1103)
                        .-...|.|+.+||||++||++- |+++++|-+.+.+....+.+|.-+|.|+.+|| |++++++|+.|.+|++|-++-|
T Consensus       506 --el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~-DSklivTgSADKnVKiWGLdFG  582 (888)
T KOG0306|consen  506 --ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISP-DSKLIVTGSADKNVKIWGLDFG  582 (888)
T ss_pred             --eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccC-CcCeEEeccCCCceEEeccccc
Confidence              1467899999999999999997 99999999999999999999999999999999 9999999999999999999999


Q ss_pred             eeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeC
Q 001310          877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  956 (1103)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d  956 (1103)
                      .|.+.+-+|.+.|.++.|-|+...+.++|.|+.|+-||-+.-+                                     
T Consensus       583 DCHKS~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe-------------------------------------  625 (888)
T KOG0306|consen  583 DCHKSFFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFE-------------------------------------  625 (888)
T ss_pred             hhhhhhhcccCceeEEEEcccceeEEEecCcceEEeechhhhh-------------------------------------
Confidence            9999999999999999999999999999999999999887622                                     


Q ss_pred             CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus       957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
                                  ++.. +.+|...|++++.+|+|.+++++|.|.+|++|......++
T Consensus       626 ------------~iq~-L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~  669 (888)
T KOG0306|consen  626 ------------EIQK-LDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILI  669 (888)
T ss_pred             ------------hhee-eccchheeeeeEEcCCCCeEEeccCCceeEeeeccCccee
Confidence                        2222 5678889999999999999999999999999998774443

>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=2.2e-48  Score=413.73  Aligned_cols=578  Identities=15%  Similarity=0.178  Sum_probs=444.7

Q ss_pred             CceEEEe-cCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          336 SPMSMDF-HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       336 ~V~~v~~-spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ++..+.. +..|+++.+  +.-..|.+||+.+|+.....                 +...-...|+|+.-+||.-.||+|
T Consensus        23 N~~~~~~~~~~Gr~va~--~a~E~vn~WdlRtge~~~~l-----------------~~~~~k~evt~l~~~~d~l~lAVG   83 (888)
T KOG0306|consen   23 NINFVVKRSGKGRAVAV--SALEQVNIWDLRTGEIEKKL-----------------ILLKKKAEVTCLRSSDDILLLAVG   83 (888)
T ss_pred             ceeEEEeecCCCcEEEE--eccccEeEEeeecchhhhhh-----------------hhhcccceEEEeeccCCcceEEEE
Confidence            3433333 346874333  33468999999999654321                 122344689999999999999999


Q ss_pred             eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1103)
                      ..||.|+||+..++....   .+.||...|+++.|...|.  .|+|||.|+.|.+||+-...-+..++||...|+..-|.
T Consensus        84 YaDGsVqif~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~  158 (888)
T KOG0306|consen   84 YADGSVQIFSLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFL  158 (888)
T ss_pred             ecCceEEeeccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhcc
Confidence            999999999999875433   7889999999999999999  89999999999999999989999999999999988874


Q ss_pred             ecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-------e-
Q 001310          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-------A-  566 (1103)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-------~-  566 (1103)
                      .  +..++++.+.|+.|++||+++..+..+...+...+..+++.+  +.+++++.    +..+.+|++...       . 
T Consensus       159 ~--~~~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~  230 (888)
T KOG0306|consen  159 N--GDSFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRY  230 (888)
T ss_pred             C--CCeEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeeccccccccccc
Confidence            3  457999999999999999999999999999999999999988  67777765    334999988211       0 


Q ss_pred             ----eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE--------cCC---------------
Q 001310          567 ----IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--------DAG---------------  619 (1103)
Q Consensus       567 ----~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--------~~~---------------  619 (1103)
                          ....+....  ++....++..++++++++-+.|..+.++.+.+.+.+...        ..+               
T Consensus       231 ~s~~~~G~~~rqs--k~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~  308 (888)
T KOG0306|consen  231 ISTKLRGTFIRQS--KGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLS  308 (888)
T ss_pred             ceeeccceeeecc--CCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHH
Confidence                111121111  344555666778889999999999999988653211000        000               


Q ss_pred             ---------CCCCCCceEEEecCCC---EEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCc
Q 001310          620 ---------GGLPENPRICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  687 (1103)
Q Consensus       620 ---------~~~~~v~~v~~s~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  687 (1103)
                               .....+.++.|-|.++   .|+. -.++++.+|.++......                             
T Consensus       309 ~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~-----------------------------  358 (888)
T KOG0306|consen  309 DEIKRLETIRTSAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTS-----------------------------  358 (888)
T ss_pred             HHHHHHHheechhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCC-----------------------------
Confidence                     0112344555655432   2222 445556665554310000                             


Q ss_pred             eEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310          688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1103)
Q Consensus       688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~  767 (1103)
                                                      +.....-.+...+|...|+++++|.+...+++++. +.+++|      
T Consensus       359 --------------------------------p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~-~SikiW------  399 (888)
T KOG0306|consen  359 --------------------------------PEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAG-ESIKIW------  399 (888)
T ss_pred             --------------------------------ccccccceeeeccchhheeEEEeecCceeeeecCC-CcEEEE------
Confidence                                            00001111222459999999999999886655554 455555      


Q ss_pred             cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCe
Q 001310          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA  846 (1103)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i  846 (1103)
                                      +..+.+|+.+..      ...+.+..|-|.++++++|. .|.+.+||+.+...+.++++|.+.|
T Consensus       400 ----------------n~~t~kciRTi~------~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaI  457 (888)
T KOG0306|consen  400 ----------------NRDTLKCIRTIT------CGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAI  457 (888)
T ss_pred             ----------------EccCcceeEEec------cccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccce
Confidence                            566677777753      34788999999999999998 5999999999999999999999999


Q ss_pred             eEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----ceeE--------EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 001310          847 TSLAFNPHDNNVIAIGMDDSTILIYNARS-----SEVI--------SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  913 (1103)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----~~~~--------~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iw  913 (1103)
                      .+++.+| |++.+++|+.|.+|++||..-     |...        .+++ -.+.|.|+.+||||++||.+=-|.+|+||
T Consensus       458 Wsi~~~p-D~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLe-l~ddvL~v~~Spdgk~LaVsLLdnTVkVy  535 (888)
T KOG0306|consen  458 WSISLSP-DNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLE-LEDDVLCVSVSPDGKLLAVSLLDNTVKVY  535 (888)
T ss_pred             eeeeecC-CCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEe-ccccEEEEEEcCCCcEEEEEeccCeEEEE
Confidence            9999999 999999999999999999752     2211        1122 45789999999999999999999999999


Q ss_pred             EcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCE
Q 001310          914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM  992 (1103)
Q Consensus       914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~  992 (1103)
                      -+++-+     ..-.+-||.-   +|.|+..|||++++++| .|.+|+||-++=|.|-.++ -+|...|.++.|.|+..+
T Consensus       536 flDtlK-----FflsLYGHkL---PV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~-fAHdDSvm~V~F~P~~~~  606 (888)
T KOG0306|consen  536 FLDTLK-----FFLSLYGHKL---PVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSF-FAHDDSVMSVQFLPKTHL  606 (888)
T ss_pred             Eeccee-----eeeeeccccc---ceeEEeccCCcCeEEeccCCCceEEeccccchhhhhh-hcccCceeEEEEccccee
Confidence            999833     4455677776   99999999999999995 8999999999999999984 479999999999999999


Q ss_pred             EEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310          993 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus       993 l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      +.|+|.|+.|+-||-+..+.+..+.                   +|...|+++++.  |+ |.++++++.|.+|++|+-
T Consensus       607 FFt~gKD~kvKqWDg~kFe~iq~L~-------------------~H~~ev~cLav~--~~-G~~vvs~shD~sIRlwE~  663 (888)
T KOG0306|consen  607 FFTCGKDGKVKQWDGEKFEEIQKLD-------------------GHHSEVWCLAVS--PN-GSFVVSSSHDKSIRLWER  663 (888)
T ss_pred             EEEecCcceEEeechhhhhhheeec-------------------cchheeeeeEEc--CC-CCeEEeccCCceeEeeec
Confidence            9999999999999999999888777                   788889977665  44 899999999999999985

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=9.8e-51  Score=398.36  Aligned_cols=333  Identities=20%  Similarity=0.320  Sum_probs=305.0

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ..|...+.||.+.|-|++|||+|+ .||+|+.|.++++||+.+..+.++                   .++|...|.|++
T Consensus       105 trCssS~~GH~e~Vl~~~fsp~g~-~l~tGsGD~TvR~WD~~TeTp~~t-------------------~KgH~~WVlcva  164 (480)
T KOG0271|consen  105 TRCSSSIAGHGEAVLSVQFSPTGS-RLVTGSGDTTVRLWDLDTETPLFT-------------------CKGHKNWVLCVA  164 (480)
T ss_pred             ceeccccCCCCCcEEEEEecCCCc-eEEecCCCceEEeeccCCCCccee-------------------ecCCccEEEEEE
Confidence            578888999999999999999998 599999999999999999988876                   889999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec-----CCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-----PCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-----d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      |||||+.||+|+.||+|++||.++|+++..  .+.+|...|++++|-|     ..+  +|++++.||+|+|||+..+.++
T Consensus       165 wsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrIWd~~~~~~~  240 (480)
T KOG0271|consen  165 WSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRIWDTKLGTCV  240 (480)
T ss_pred             ECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEEEEccCceEE
Confidence            999999999999999999999999987654  6889999999999965     556  7999999999999999999999


Q ss_pred             EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEc-----------cCCC-----
Q 001310          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-----------ANGR-----  542 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-----------~dg~-----  542 (1103)
                      ..+.+|+.+|+|++|-   ...++++++.|++|++|+...+.....+.+|.+.|+.++.+           |.++     
T Consensus       241 ~~lsgHT~~VTCvrwG---G~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~  317 (480)
T KOG0271|consen  241 RTLSGHTASVTCVRWG---GEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSF  317 (480)
T ss_pred             EEeccCccceEEEEEc---CCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCCh
Confidence            9999999999999983   23599999999999999999999999999999999999887           2233     


Q ss_pred             --------------------EEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001310          543 --------------------RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1103)
Q Consensus       543 --------------------~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  601 (1103)
                                          .|++++.    +..+++|+... .+++..+.+|.   ..|+.+.|+||++++++++.|..
T Consensus       318 se~~~~Al~rY~~~~~~~~erlVSgsD----d~tlflW~p~~~kkpi~rmtgHq---~lVn~V~fSPd~r~IASaSFDkS  390 (480)
T KOG0271|consen  318 SEEQKKALERYEAVLKDSGERLVSGSD----DFTLFLWNPFKSKKPITRMTGHQ---ALVNHVSFSPDGRYIASASFDKS  390 (480)
T ss_pred             HHHHHHHHHHHHHhhccCcceeEEecC----CceEEEecccccccchhhhhchh---hheeeEEECCCccEEEEeecccc
Confidence                                4888875    66799999764 44778888888   89999999999999999999999


Q ss_pred             EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeee
Q 001310          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  681 (1103)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  681 (1103)
                      |++||..+|+.+.++.+|  ...|+.++|+.|.++|++++.|.++++|++.+.+....+.+|.+.|.++.++        
T Consensus       391 VkLW~g~tGk~lasfRGH--v~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh~DEVf~vDws--------  460 (480)
T KOG0271|consen  391 VKLWDGRTGKFLASFRGH--VAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGHADEVFAVDWS--------  460 (480)
T ss_pred             eeeeeCCCcchhhhhhhc--cceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCCCceEEEEEec--------
Confidence            999999999999999977  5679999999999999999999999999999999999999999999999997        


Q ss_pred             eccCCceEecCCCCCCCccceeecccccccccc
Q 001310          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  714 (1103)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~  714 (1103)
                                    |||..+++|+.|..+++|.
T Consensus       461 --------------pDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  461 --------------PDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             --------------CCCceeecCCCceEEEeec
Confidence                          8899999999999999995

>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=100.00  E-value=5.2e-46  Score=395.92  Aligned_cols=547  Identities=13%  Similarity=0.164  Sum_probs=434.7

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  480 (1103)
                      .+.|++||..+++-..+ .|.++|+...+...   ..-.+...|.+++.||+|.  ++++...+|...+-++.....++.
T Consensus        19 nl~ft~dG~sviSPvGN-rvsv~dLknN~S~T---l~~e~~~NI~~ialSp~g~--lllavdE~g~~~lvs~~~r~Vlh~   92 (893)
T KOG0291|consen   19 NLVFTKDGNSVISPVGN-RVSVFDLKNNKSYT---LPLETRYNITRIALSPDGT--LLLAVDERGRALLVSLLSRSVLHR   92 (893)
T ss_pred             cEEECCCCCEEEeccCC-EEEEEEccCCccee---EEeecCCceEEEEeCCCce--EEEEEcCCCcEEEEecccceeeEE
Confidence            48899999999987544 59999998865332   2235778899999999999  899999999999999888888887


Q ss_pred             eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--------eEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      +. ...+|.+++|+|  ||.+++.+ ..+.+.||.......        ..++.++-..|.++.|+.|.+++++++.   
T Consensus        93 f~-fk~~v~~i~fSP--ng~~fav~-~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr~l~~gsr---  165 (893)
T KOG0291|consen   93 FN-FKRGVGAIKFSP--NGKFFAVG-CGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSRLLVTGSR---  165 (893)
T ss_pred             Ee-ecCccceEEECC--CCcEEEEE-ecceeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCceEEeccc---
Confidence            75 567899999965  66665554 467899997654322        3356677789999999999999999876   


Q ss_pred             CceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------------------
Q 001310          553 GESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------------------  609 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------------------  609 (1103)
                       |...++|++...+-  ...+.+|.   +.|.++.|..+...+++.+.||.+.+|....                     
T Consensus       166 -D~s~rl~~v~~~k~~~~~~l~gHk---d~VvacfF~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~  241 (893)
T KOG0291|consen  166 -DLSARLFGVDGNKNLFTYALNGHK---DYVVACFFGANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD  241 (893)
T ss_pred             -cceEEEEEeccccccceEeccCCC---cceEEEEeccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence             66799999887665  55667777   9999999999999999999999999997761                     


Q ss_pred             --Cee---------EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310          610 --VQL---------LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1103)
Q Consensus       610 --~~~---------~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  678 (1103)
                        ++.         ....-.......+.+.+|++..+.|++|-..|...+|+++.-..+..+..                
T Consensus       242 ~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~lih~LSi----------------  305 (893)
T KOG0291|consen  242 EDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNLIHSLSI----------------  305 (893)
T ss_pred             ccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceEEEEeec----------------
Confidence              111         00111111224578888888888888988888888888876655544321                


Q ss_pred             eeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ce
Q 001310          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GV  757 (1103)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~  757 (1103)
                                                                            ...+|..++|+..|..++.++.. |.
T Consensus       306 ------------------------------------------------------s~~~I~t~~~N~tGDWiA~g~~klgQ  331 (893)
T KOG0291|consen  306 ------------------------------------------------------SDQKILTVSFNSTGDWIAFGCSKLGQ  331 (893)
T ss_pred             ------------------------------------------------------ccceeeEEEecccCCEEEEcCCccce
Confidence                                                                  23567888899999999998886 99


Q ss_pred             EEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceee
Q 001310          758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  836 (1103)
Q Consensus       758 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~  836 (1103)
                      +.||+|+.+..                        .  +...+|...++++++||||+++|+|+ ||+|+|||..++-|+
T Consensus       332 LlVweWqsEsY------------------------V--lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~  385 (893)
T KOG0291|consen  332 LLVWEWQSESY------------------------V--LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCF  385 (893)
T ss_pred             EEEEEeeccce------------------------e--eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEE
Confidence            99999877543                        1  22336999999999999999999998 799999999999999


Q ss_pred             EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC-CCCEEEEEEccCCCEEEEEeCCC-eEEEEE
Q 001310          837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVFSDALNILVSSGGDA-QIFVWD  914 (1103)
Q Consensus       837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~s~dg~~l~s~s~dg-~I~iwd  914 (1103)
                      .++..|...|+.+.|+. .++.+++.+-||+|+.||+..++..+++... .-...|++..|.|.++..|+.|. .|.+|+
T Consensus       386 vTFteHts~Vt~v~f~~-~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS  464 (893)
T KOG0291|consen  386 VTFTEHTSGVTAVQFTA-RGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWS  464 (893)
T ss_pred             EEeccCCCceEEEEEEe-cCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEE
Confidence            99999999999999999 8999999999999999999999999998853 33457888888899999988886 599999


Q ss_pred             cCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEE
Q 001310          915 VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMV  993 (1103)
Q Consensus       915 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l  993 (1103)
                      +++|+     .+..+.||..   +|.+++|+|+|..||++ -|.+|++||+-........+ .+...+..++|+|||+-|
T Consensus       465 ~qTGq-----llDiLsGHEg---PVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~el  535 (893)
T KOG0291|consen  465 VQTGQ-----LLDILSGHEG---PVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKEL  535 (893)
T ss_pred             eecCe-----eeehhcCCCC---cceeeEEccccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeE
Confidence            99987     6778888886   99999999999999995 89999999996543222212 246789999999999999


Q ss_pred             EEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEee-ccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310          994 FTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCY-CSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus       994 ~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                      ++++.||.|.+||+..+.....+.....+..+......+-... ..+...  ..+++++| |..+++||....|++|++.
T Consensus       536 aVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~F--tti~ySaD-G~~IlAgG~sn~iCiY~v~  612 (893)
T KOG0291|consen  536 AVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTF--TTICYSAD-GKCILAGGESNSICIYDVP  612 (893)
T ss_pred             EEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCce--EEEEEcCC-CCEEEecCCcccEEEEECc
Confidence            9999999999999999988877765544433332222222111 122222  57899998 9999999999999999975


Q ss_pred             C
Q 001310         1073 E 1073 (1103)
Q Consensus      1073 ~ 1073 (1103)
                      +
T Consensus       613 ~  613 (893)
T KOG0291|consen  613 E  613 (893)
T ss_pred             h
Confidence            4

>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.8e-49  Score=389.45  Aligned_cols=367  Identities=20%  Similarity=0.289  Sum_probs=295.2

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.||.++|.|++|||+|+.||+|+.|.++++||+.+.....   +.++|...|.|++|+|||+  .|++|+.||+|++||
T Consensus       111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lwd  185 (480)
T KOG0271|consen  111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLWD  185 (480)
T ss_pred             cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEec
Confidence            77899999999999999999999999999999999975444   8899999999999999999  899999999999999


Q ss_pred             CCCCcee-EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          472 AVTGSRT-YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       472 ~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      ..+|+++ ..+.+|...|++++|.|-                                       ...|..++|++++. 
T Consensus       186 pktg~~~g~~l~gH~K~It~Lawep~---------------------------------------hl~p~~r~las~sk-  225 (480)
T KOG0271|consen  186 PKTGQQIGRALRGHKKWITALAWEPL---------------------------------------HLVPPCRRLASSSK-  225 (480)
T ss_pred             CCCCCcccccccCcccceeEEeeccc---------------------------------------ccCCCccceecccC-
Confidence            9999876 688999999999998653                                       23466667777765 


Q ss_pred             CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                         |+.++|||+..++++..+.+|.   .+|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+  .|+.++.
T Consensus       226 ---Dg~vrIWd~~~~~~~~~lsgHT---~~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lal  296 (480)
T KOG0271|consen  226 ---DGSVRIWDTKLGTCVRTLSGHT---ASVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLAL  296 (480)
T ss_pred             ---CCCEEEEEccCceEEEEeccCc---cceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeec
Confidence               5558889988899999999998   999999998764 899999999999999999999999998876  5888888


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001310          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1103)
Q Consensus       631 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1103)
                      +.|- .|-+|..|.+=+-....+......+... +.+                                           
T Consensus       297 sTdy-~LRtgaf~~t~~~~~~~se~~~~Al~rY-~~~-------------------------------------------  331 (480)
T KOG0271|consen  297 STDY-VLRTGAFDHTGRKPKSFSEEQKKALERY-EAV-------------------------------------------  331 (480)
T ss_pred             cchh-hhhccccccccccCCChHHHHHHHHHHH-HHh-------------------------------------------
Confidence            8642 2333333321111000000000000000 000                                           


Q ss_pred             ccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCc
Q 001310          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1103)
Q Consensus       711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1103)
                                                     .-..+..+++++.|.++.+|+-...+.                     +
T Consensus       332 -------------------------------~~~~~erlVSgsDd~tlflW~p~~~kk---------------------p  359 (480)
T KOG0271|consen  332 -------------------------------LKDSGERLVSGSDDFTLFLWNPFKSKK---------------------P  359 (480)
T ss_pred             -------------------------------hccCcceeEEecCCceEEEeccccccc---------------------c
Confidence                                           001224456666666666665221110                     0


Q ss_pred             eeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEE
Q 001310          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTIL  869 (1103)
Q Consensus       791 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~  869 (1103)
                      +  ..+  .+|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-+.|..++|+. |.++|++|+.|.+++
T Consensus       360 i--~rm--tgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLK  434 (480)
T KOG0271|consen  360 I--TRM--TGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLK  434 (480)
T ss_pred             h--hhh--hchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEE
Confidence            0  011  25999999999999999999999 89999999999999999999999999999999 999999999999999


Q ss_pred             EEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310          870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1103)
Q Consensus       870 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd  914 (1103)
                      +|++.+.++...+.||.++|.++.|+|||..+++|+.|+.+++|.
T Consensus       435 vw~V~tkKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~  479 (480)
T KOG0271|consen  435 VWDVRTKKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR  479 (480)
T ss_pred             EEEeeeeeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence            999999999999999999999999999999999999999999994

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=1.5e-41  Score=358.35  Aligned_cols=618  Identities=14%  Similarity=0.150  Sum_probs=417.9

Q ss_pred             ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-
Q 001310          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-  415 (1103)
Q Consensus       337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-  415 (1103)
                      -..++.+|-.. ++|- -....|.+||+...++-+                   ++..|..+++++|||++|+|+|+|- 
T Consensus        40 ~~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~h-------------------lvnssRk~~t~vAfS~~GryvatGEc   98 (1080)
T KOG1408|consen   40 ANGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQSH-------------------LVNSSRKPLTCVAFSQNGRYVATGEC   98 (1080)
T ss_pred             CCccccccccc-ceee-ccCcEEEEEcccccchhh-------------------eecccCcceeEEEEcCCCcEEEeccc
Confidence            34566666654 3332 123789999988766543                   3667889999999999999999984 


Q ss_pred             -CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCceeEEeecCCCceEEEE
Q 001310          416 -SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1103)
Q Consensus       416 -~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~  492 (1103)
                       ....++||++.....+.   ++..|...|+|++|+|.++  ++++.+...  .|.+||++.......- .-...|..++
T Consensus        99 G~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asn-kiss~Vsav~  172 (1080)
T KOG1408|consen   99 GRTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASN-KISSVVSAVA  172 (1080)
T ss_pred             CCCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhccccccc-ccceeEEEEE
Confidence             56679999999876555   6789999999999999999  788777544  5778887655443322 1345677888


Q ss_pred             eeecCCccEEEEEECCCeEEEEEcCCCCeeEE---ecCCCcc--------EEEEEEc----cCCCEEEEEecCCCCceeE
Q 001310          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDAPGLG--------CTRMAYS----ANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~~~~~--------i~~~~~s----~dg~~l~~~~~~~~~~~~i  557 (1103)
                      |  +++|.++++.+ ...|++|.++.......   +.+...-        ...++.-    .+..+.++.      .|.+
T Consensus       173 f--sEdgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhL  243 (1080)
T KOG1408|consen  173 F--SEDGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHL  243 (1080)
T ss_pred             E--ccCCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccce
Confidence            8  66888888876 46799999887652221   1111100        0011100    011111111      1112


Q ss_pred             EEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC------------------
Q 001310          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG------------------  619 (1103)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~------------------  619 (1103)
                      .  ...+.+++.++..-.  ....+|++.+  .++|++|+.+|.|++|+..+-.-+.+++..                  
T Consensus       244 v--EFSsRRLLDKWVqcR--TTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s  317 (1080)
T KOG1408|consen  244 V--EFSSRRLLDKWVQCR--TTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNS  317 (1080)
T ss_pred             e--eechhhhhhhhhhhh--ccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhccccccccc
Confidence            1  122222222222111  1334566654  578999999999999998765444333211                  


Q ss_pred             ----CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee---EeccccccceeeeEEecCCceeeeeccCCceEecC
Q 001310          620 ----GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV---DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1103)
Q Consensus       620 ----~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1103)
                          ...+....+.|++....|.+...|..+++||+..-..+   ..+-.|...|+.+..-|....-.     ....   
T Consensus       318 ~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~-----~~ac---  389 (1080)
T KOG1408|consen  318 ESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSP-----TAAC---  389 (1080)
T ss_pred             ccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCc-----cccc---
Confidence                11233456889999999999999999999999876443   33445777777766554211100     0000   


Q ss_pred             CCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccc
Q 001310          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1103)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~  772 (1103)
                        .|.+ .+++++.|++||+|+++.........-         .|    ++.+-..++..  |+...+-.          
T Consensus       390 --lp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrR---------Ni----ls~~l~ki~y~--d~~~q~~~----------  441 (1080)
T KOG1408|consen  390 --LPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRR---------NI----LSANLSKIPYE--DSTQQIMH----------  441 (1080)
T ss_pred             --CCcc-ceeEecCCCcEEEeecccccccceeec---------cc----chhhhhcCccc--cCchhhhh----------
Confidence              1333 378999999999999885332222110         00    11111111111  11000000          


Q ss_pred             ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEE
Q 001310          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAF  851 (1103)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~  851 (1103)
                          .....++|-....        .......+.++++||+|++||+|. .|.+++|++...+.+..+.+|..+|.|+.|
T Consensus       442 ----d~~~~~fdka~~s--------~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey  509 (1080)
T KOG1408|consen  442 ----DASAGIFDKALVS--------TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY  509 (1080)
T ss_pred             ----hccCCcccccchh--------hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence                0001111111100        012567899999999999999998 599999999999999999999999999999


Q ss_pred             cCC--CCCEEEEEeCCCeEEEEEcCC-ceeEEEeccCCCCEEEEEEccCC--CEEEEEeCCCeEEEEEcCC---Cceeee
Q 001310          852 NPH--DNNVIAIGMDDSTILIYNARS-SEVISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDG---WGIQTC  923 (1103)
Q Consensus       852 s~~--d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg--~~l~s~s~dg~I~iwd~~~---~~~~~~  923 (1103)
                      |-.  ..++||+++.|..|.|||+.. ..+++++.+|+..|+++.|...|  ..++++|.|+.|.+--...   |.+.. 
T Consensus       510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~-  588 (1080)
T KOG1408|consen  510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFP-  588 (1080)
T ss_pred             cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceecc-
Confidence            853  357999999999999999975 46788999999999999999887  7899999999765432221   11111 


Q ss_pred             eeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCC--CCcCeEEEEEccCCCEEEEEecCC
Q 001310          924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus       924 ~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
                      +..++. ++    ..+..|+..|..+++++ +.|..|+||++.+|+....+...  |.+..-.+...|.|-|||+...|.
T Consensus       589 r~t~t~-~k----tTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdk  663 (1080)
T KOG1408|consen  589 RHTQTL-SK----TTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDK  663 (1080)
T ss_pred             cccccc-cc----ceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCC
Confidence            011111 11    35889999999999999 58999999999999999886554  456777889999999999999999


Q ss_pred             cEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310         1001 TLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1001 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                      ++.++|..+|++++++.                   ||+..|.  .+.|.+| -..|++++.||.|.||.++
T Consensus       664 tl~~~Df~sgEcvA~m~-------------------GHsE~VT--G~kF~nD-CkHlISvsgDgCIFvW~lp  713 (1080)
T KOG1408|consen  664 TLCFVDFVSGECVAQMT-------------------GHSEAVT--GVKFLND-CKHLISVSGDGCIFVWKLP  713 (1080)
T ss_pred             ceEEEEeccchhhhhhc-------------------Ccchhee--eeeeccc-chhheeecCCceEEEEECc
Confidence            99999999999999988                   8888886  5678877 7889999999999999964

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=4.9e-41  Score=339.79  Aligned_cols=345  Identities=19%  Similarity=0.267  Sum_probs=289.4

Q ss_pred             CccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCC--CCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      +|....+.+. |+.+|.+.+|+|-..-++|+|+.|-+.++|++..  ........+     ..|...--+  -...+..|
T Consensus       167 I~~~~~kvl~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~l-----rh~~~~~~~--s~~~nkdV  238 (524)
T KOG0273|consen  167 IPSSKAKVLR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVL-----RHCIREGGK--SVPSNKDV  238 (524)
T ss_pred             ccccceeecc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhh-----hhhhhhhcc--cCCccCCc
Confidence            5666667777 9999999999997765899999999999999864  111110000     000000000  11134689


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      ++++|+.+|..||+|+.||.++||+..++. +.   ++..|.++|.++.|+.+|.  ++++++.|+++.+||..+|...+
T Consensus       239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  239 TSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             ceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceEEE
Confidence            999999999999999999999999998743 32   6889999999999999999  89999999999999999999999


Q ss_pred             EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      .+..|..+-..+.|.   +...+++.+.|+.|+++.+....+..++.+|.++|.++.|.|.|.+|++++.    |+++.|
T Consensus       313 ~f~~~s~~~lDVdW~---~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tlki  385 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQ---SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTLKI  385 (524)
T ss_pred             eeeeccCCccceEEe---cCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCeeEe
Confidence            999999886667764   2247999999999999999999999999999999999999999999999986    778999


Q ss_pred             EeCCCCeeEEEEecccccCCceEEEEEcCCC---------CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAK---------DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                      |+.........+..|.   ..|..+.|+|.|         ..+++++.|++|++||+..+.++..+..|  ..+|.+++|
T Consensus       386 Ws~~~~~~~~~l~~Hs---kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH--~~pVysvaf  460 (524)
T KOG0273|consen  386 WSMGQSNSVHDLQAHS---KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH--QEPVYSVAF  460 (524)
T ss_pred             eecCCCcchhhhhhhc---cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC--CCceEEEEe
Confidence            9999998888999888   899999999975         46899999999999999999999999766  457999999


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001310          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1103)
Q Consensus       631 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1103)
                      +|+|+++|+|+.||.|.+|+.++++.++...                                                 
T Consensus       461 S~~g~ylAsGs~dg~V~iws~~~~~l~~s~~-------------------------------------------------  491 (524)
T KOG0273|consen  461 SPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ-------------------------------------------------  491 (524)
T ss_pred             cCCCcEEEecCCCCeeEeccccchheeEeec-------------------------------------------------
Confidence            9999999999999999999999987776554                                                 


Q ss_pred             ccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeec
Q 001310          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1103)
Q Consensus       711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~  763 (1103)
                                            ..+.|..+.|+.+|..+.++..||.+++-|+
T Consensus       492 ----------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl  522 (524)
T KOG0273|consen  492 ----------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL  522 (524)
T ss_pred             ----------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence                                  2344778888989998888888888888764

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=3.4e-39  Score=341.47  Aligned_cols=606  Identities=14%  Similarity=0.150  Sum_probs=426.1

Q ss_pred             EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC---EEEEEeC
Q 001310          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS---LLGVAYS  416 (1103)
Q Consensus       340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~---~las~~~  416 (1103)
                      ..|.|.+  ++|.|.. ..|.+||..+.....                   .+.||..+|+|+.|-|+.+   ++++|+.
T Consensus        20 ~sw~~~~--~vafGa~-~~Iav~dp~k~~i~t-------------------~l~GH~a~VnC~~~l~~s~~~a~~vsG~s   77 (764)
T KOG1063|consen   20 SSWGPGG--LVAFGAG-PAIAVADPEKILIVT-------------------TLDGHVARVNCVHWLPTSEIVAEMVSGDS   77 (764)
T ss_pred             ccccccc--eEEecCC-ceEEEeCcccceeEE-------------------eccCCccceEEEEEcccccccceEEEccC
Confidence            3456666  4566544 789999987653333                   2889999999999999888   8999999


Q ss_pred             CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc--eeEEeecCCCceE--EEE
Q 001310          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVY--SLC  492 (1103)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v~--~~~  492 (1103)
                      |+.|++|.++. +.+.....+.+|...+.|+  .....  ...+...|+++.+||.+..+  ++..+....+.+.  +++
T Consensus        78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~cv--~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~  152 (764)
T KOG1063|consen   78 DGRVILWKLRD-EYLIKIYTIQGHCKECVCV--VARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA  152 (764)
T ss_pred             CCcEEEEEEee-hheEEEEeecCcceeEEEE--Eeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence            99999999994 3445555777776655554  43222  22333789999999985555  3333333333333  344


Q ss_pred             eeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEccCCC---EEEEEecCCCCceeEEEEeCCCCe-
Q 001310          493 PHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGR---RLFSCGTSKEGESFLVEWNESEGA-  566 (1103)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~---~l~~~~~~~~~~~~i~iwd~~~~~-  566 (1103)
                      +.+.++.-.++.|+.+..|.++.-.+.+  ....+.+|...|.+++|...+.   +|++++    .|.+|++|.+.-+. 
T Consensus       153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~  228 (764)
T KOG1063|consen  153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD  228 (764)
T ss_pred             hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence            4443444456677778888888655433  4457889999999999988655   445544    37889999765322 


Q ss_pred             --------------------eE----------EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEE
Q 001310          567 --------------------IK----------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLT  614 (1103)
Q Consensus       567 --------------------~~----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~  614 (1103)
                                          ..          ..+.||.   +.|.++.|+|.+..|++++.|.++.+|...+.  --+.
T Consensus       229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHe---DWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~  305 (764)
T KOG1063|consen  229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHE---DWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVD  305 (764)
T ss_pred             ccccccccccccccCCceeeeeeeEEEEEehhhhhcCcc---cceEEEEEccchhhheecccCcceEEEecCCccceEEE
Confidence                                11          1123555   99999999999999999999999999987654  2222


Q ss_pred             EEcC---CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC---CeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310          615 TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1103)
Q Consensus       615 ~~~~---~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  688 (1103)
                      ....   .+........-|+|+++.+++-+..|..++|.....   .....+.+|...|+.+++.               
T Consensus       306 ~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~---------------  370 (764)
T KOG1063|consen  306 VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWD---------------  370 (764)
T ss_pred             EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceeeeec---------------
Confidence            2221   122234688999999999999999999999994433   2344568999999999997               


Q ss_pred             EecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcc
Q 001310          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL  768 (1103)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~  768 (1103)
                             |.|.++++.+.|.+-|++-... .......+..| +.|...+.+++|-+....+++++....+++|+.+..-.
T Consensus       371 -------psGeflLsvs~DQTTRlFa~wg-~q~~wHEiaRP-QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv  441 (764)
T KOG1063|consen  371 -------PSGEFLLSVSLDQTTRLFARWG-RQQEWHEIARP-QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFV  441 (764)
T ss_pred             -------CCCCEEEEeccccceeeecccc-cccceeeeccc-ccccccceeeehccCCceeeecccceeeeeecCcHHHH
Confidence                   6788999999999999977552 22222333222 46899999999999766688888889999999876432


Q ss_pred             ----------------ccccccccc---cCCeee--cCCCCCc------------------------eeecc-----CCC
Q 001310          769 ----------------TLSTEATTK---VPPRLY--QPRHGPQ------------------------FMVND-----TTD  798 (1103)
Q Consensus       769 ----------------~~~~~~~~~---~~~~~~--~~~~~~~------------------------~~~~~-----~~~  798 (1103)
                                      .+.+.....   ..-.++  +..+|..                        +....     -+.
T Consensus       442 ~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KL  521 (764)
T KOG1063|consen  442 KSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKL  521 (764)
T ss_pred             HHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHh
Confidence                            001000000   000000  1111111                        11100     013


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEcC------CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310          799 SNSQEAVPCFALSKNDAYLFSASG------GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN  872 (1103)
Q Consensus       799 ~~~~~~v~~l~~s~d~~~l~~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1103)
                      .||...|.+++.+|+|+++|+++.      ..|++|+..+....+.+.+|.-.|+.++||| |+++|++.+.|.++.+|.
T Consensus       522 YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~sl~~  600 (764)
T KOG1063|consen  522 YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVSLYE  600 (764)
T ss_pred             ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEEeee
Confidence            479999999999999999999962      3499999999999999999999999999999 999999999999999998


Q ss_pred             cCCce----eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC-
Q 001310          873 ARSSE----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-  947 (1103)
Q Consensus       873 ~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-  947 (1103)
                      .....    .....+.|+.-|.++.|+||++++||+|.|++|++|.........   +... ....++..|+.+++.|- 
T Consensus       601 ~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~---i~~~-a~~~~~~aVTAv~~~~~~  676 (764)
T KOG1063|consen  601 VQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKY---ISRF-ACLKFSLAVTAVAYLPVD  676 (764)
T ss_pred             eecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhh---hhhh-chhccCCceeeEEeeccc
Confidence            86532    123467899999999999999999999999999999998863111   1110 11222347889988763 


Q ss_pred             ----CCEEEEE-eCCeEEEEECCC-------ceEE--EE--eeCCCCcCeEEEEEccC----------CCEEEEEecCCc
Q 001310          948 ----QTRFLLV-HETHLAIYEAEE-------LTCL--KQ--WFPISSVPISQATFSCD----------CRMVFTSFVDGT 1001 (1103)
Q Consensus       948 ----g~~l~~~-~d~~v~iwd~~~-------~~~~--~~--~~~~h~~~v~~l~fs~d----------g~~l~t~~~dg~ 1001 (1103)
                          +..+++| ..|.|.+|....       +...  ..  -..+|...|..+.|+|-          ...|++|++|.+
T Consensus       677 ~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~  756 (764)
T KOG1063|consen  677 HNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDES  756 (764)
T ss_pred             cccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccce
Confidence                2255667 789999999651       1110  00  12346788999999964          235799999999


Q ss_pred             EEEEeCC
Q 001310         1002 LSIHEAS 1008 (1103)
Q Consensus      1002 v~vWd~~ 1008 (1103)
                      +|++++.
T Consensus       757 vri~nv~  763 (764)
T KOG1063|consen  757 VRIFNVD  763 (764)
T ss_pred             eEEeecc
Confidence            9999874

>KOG1408 consensus WD40 repeat protein [Function unknown]

Probab=100.00  E-value=7.2e-40  Score=345.63  Aligned_cols=509  Identities=15%  Similarity=0.193  Sum_probs=379.4

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEc--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      +.+..|...++|++|||+|+ ++|+|-  ....++||++.....+..                   +..|...|+|++|+
T Consensus        72 hlvnssRk~~t~vAfS~~Gr-yvatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFs  131 (1080)
T KOG1408|consen   72 HLVNSSRKPLTCVAFSQNGR-YVATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFS  131 (1080)
T ss_pred             heecccCcceeEEEEcCCCc-EEEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeec
Confidence            34567788999999999998 689986  456799999998876665                   66799999999999


Q ss_pred             CCCCEEEEEeC--CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE----
Q 001310          406 PDGSLLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY----  479 (1103)
Q Consensus       406 pdg~~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----  479 (1103)
                      |.++|+++.+.  |-.|.+||+.......    -..-...|.+++|+.||.  ++++.+ ...|++|.++.++...    
T Consensus       132 p~~kyvvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiP  204 (1080)
T KOG1408|consen  132 PGNKYVVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIP  204 (1080)
T ss_pred             CCCcEEEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCcc
Confidence            99999998765  4468899887643222    223456799999999999  788888 5679999987665210    


Q ss_pred             ---------Ee------------------------ecC-----------------CCceEEEEeeecCCccEEEEEECCC
Q 001310          480 ---------SF------------------------EGH-----------------GAPVYSLCPHAKENIHFIFSISVDG  509 (1103)
Q Consensus       480 ---------~~------------------------~~~-----------------~~~v~~~~~~~~~~~~~l~s~~~dg  509 (1103)
                               .+                        .||                 ...-.+|+.    +.++|++|+.+|
T Consensus       205 l~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRTTnAnCIcV----s~r~I~cgCa~g  280 (1080)
T KOG1408|consen  205 LPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRTTNANCICV----SSRLIACGCAKG  280 (1080)
T ss_pred             ccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhccccceeee----ecceEEEeeccc
Confidence                     00                        001                 011123333    346899999999


Q ss_pred             eEEEEEcCCCCeeEEec------------------------CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          510 KIKAWLYDSLGARVDYD------------------------APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       510 ~i~iwd~~~~~~~~~~~------------------------~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      .|++++..+..-..++.                        ..-....++.|++....|.+...    +..+++||++.-
T Consensus       281 ~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYn----dhSlYvWDvrD~  356 (1080)
T KOG1408|consen  281 MVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYN----DHSLYVWDVRDV  356 (1080)
T ss_pred             eeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEc----CceEEEEecccc
Confidence            99999866533222111                        00112456788988888888875    666999999876


Q ss_pred             eeEEEEecccccCCceEEEEEcCC-----------CCEEEEEeCCCcEEEEECCCCeeEEEE------------c-----
Q 001310          566 AIKRTYQGLQLQHNSVSVVHFDTA-----------KDQILAAGDDHVIKIWDMNKVQLLTTI------------D-----  617 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~-----------~~~l~~~~~dg~i~iwd~~~~~~~~~~------------~-----  617 (1103)
                      ..+.+....-.|...|+.+.--|-           ...+++++.|++|++||++.+..-..+            .     
T Consensus       357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~  436 (1080)
T KOG1408|consen  357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDST  436 (1080)
T ss_pred             ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCc
Confidence            554433322223356666554431           235889999999999999763211100            0     


Q ss_pred             ------------------CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCcee
Q 001310          618 ------------------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT  679 (1103)
Q Consensus       618 ------------------~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~  679 (1103)
                                        .-+....+.+++.+|+|++||+|..-|.+++|++.+.+....+..|...|.|+.++-..   
T Consensus       437 ~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~---  513 (1080)
T KOG1408|consen  437 QQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPV---  513 (1080)
T ss_pred             hhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCch---
Confidence                              00122357899999999999999999999999999999999999999999999998321   


Q ss_pred             eeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCC--cEEEEeecCce
Q 001310          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG--QAIFALASNGV  757 (1103)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g--~~l~~~~~dg~  757 (1103)
                                      -..++|++++.|.-|.++|....     ..+.....+|...|+++.|...|  ..+++++.|..
T Consensus       514 ----------------~~~kLLASasrdRlIHV~Dv~rn-----y~l~qtld~HSssITsvKFa~~gln~~MiscGADks  572 (1080)
T KOG1408|consen  514 ----------------LTNKLLASASRDRLIHVYDVKRN-----YDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKS  572 (1080)
T ss_pred             ----------------hhhHhhhhccCCceEEEEecccc-----cchhhhhcccccceeEEEEeecCCceEEEeccCchh
Confidence                            23578999999999999997632     22222335699999999999888  77899999976


Q ss_pred             EEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceee
Q 001310          758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI  836 (1103)
Q Consensus       758 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~  836 (1103)
                      +.. +.....          ...+++--.+.        .  -....+..+++.|..+++++++ |..|+||++.+++..
T Consensus       573 imF-r~~qk~----------~~g~~f~r~t~--------t--~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~  631 (1080)
T KOG1408|consen  573 IMF-RVNQKA----------SSGRLFPRHTQ--------T--LSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQV  631 (1080)
T ss_pred             hhe-ehhccc----------cCceecccccc--------c--cccceEEEeeeCCCcceEEEEecccceEEEecccccee
Confidence            653 221100          01111110000        0  1456788999999999999998 799999999999999


Q ss_pred             EEecC---CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 001310          837 LTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  913 (1103)
Q Consensus       837 ~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iw  913 (1103)
                      +.|++   |.+....+...| .|-|||+...|+++.++|+.+|+++.+..||...|+.+.|++|.+.|++.+.||.|.||
T Consensus       632 k~FKgs~~~eG~lIKv~lDP-SgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlISvsgDgCIFvW  710 (1080)
T KOG1408|consen  632 KSFKGSRDHEGDLIKVILDP-SGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLISVSGDGCIFVW  710 (1080)
T ss_pred             eeecccccCCCceEEEEECC-CccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhheeecCCceEEEE
Confidence            99986   556788899999 89999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCC
Q 001310          914 DVDG  917 (1103)
Q Consensus       914 d~~~  917 (1103)
                      .+..
T Consensus       711 ~lp~  714 (1080)
T KOG1408|consen  711 KLPL  714 (1080)
T ss_pred             ECch
Confidence            9875

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=1.6e-41  Score=338.82  Aligned_cols=284  Identities=19%  Similarity=0.250  Sum_probs=266.6

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC--C
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD--G  408 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd--g  408 (1103)
                      .|.+.+|..+.||+|++ ++|+||-+|.++||+..++..+.+                   +.||...|.++.|+|.  +
T Consensus       172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~~-------------------l~gH~~~v~~~~fhP~~~~  231 (459)
T KOG0272|consen  172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQT-------------------LRGHTSRVGAAVFHPVDSD  231 (459)
T ss_pred             ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeEE-------------------EeccccceeeEEEccCCCc
Confidence            36778999999999998 799999999999999999977665                   8899999999999996  6


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  488 (1103)
                      ..+|+|+.||++++|++.+...+.   .+.+|...|..++|+|+|+  +|+|++.|.+-++||+.++..+...+||...|
T Consensus       232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v  306 (459)
T KOG0272|consen  232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV  306 (459)
T ss_pred             cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence            799999999999999999876555   7889999999999999999  89999999999999999999999999999999


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      .+++|++  ||.++++|+.|..-+|||++++.++..+.+|..+|.+++|+|+|..|++|+.    |++++|||++....+
T Consensus       307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l  380 (459)
T KOG0272|consen  307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL  380 (459)
T ss_pred             ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence            9999965  7789999999999999999999999999999999999999999999999976    778999999999999


Q ss_pred             EEEecccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310          569 RTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1103)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~  647 (1103)
                      ..+..|.   +.|..+.|+| .|.+|++++.|++++||...+..+++++.+|..  .|.++.+++|+.++++++.|++++
T Consensus       381 y~ipAH~---nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~K  455 (459)
T KOG0272|consen  381 YTIPAHS---NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIK  455 (459)
T ss_pred             eeccccc---chhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceee
Confidence            9999998   9999999998 688999999999999999999999999998855  599999999999999999999999


Q ss_pred             EEE
Q 001310          648 ILE  650 (1103)
Q Consensus       648 iw~  650 (1103)
                      +|.
T Consensus       456 LW~  458 (459)
T KOG0272|consen  456 LWR  458 (459)
T ss_pred             ecc
Confidence            995

>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]

Probab=100.00  E-value=6.7e-41  Score=334.46  Aligned_cols=285  Identities=17%  Similarity=0.258  Sum_probs=266.4

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  473 (1103)
                      |.+.+|..+.||+|++.||+|+.+|.++||+..+...+.   ++.||...|.++.|+|......++||+.||++++|++.
T Consensus       173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~  249 (459)
T KOG0272|consen  173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS  249 (459)
T ss_pred             cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence            466799999999999999999999999999999875444   89999999999999998422379999999999999999


Q ss_pred             CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      +..++..+.+|...|..++|+|  +|++|++++.|.+-++||+.+........+|...|.+++|.+||..+++|+.    
T Consensus       250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl----  323 (459)
T KOG0272|consen  250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL----  323 (459)
T ss_pred             CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence            9999999999999999999976  6689999999999999999999999999999999999999999999999986    


Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-  632 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-  632 (1103)
                      |..-+|||+++|+.+..+.+|.   .+|.+++|+|+|..+++||.|++++|||++..+.+.+++.|..  .|..|.|+| 
T Consensus       324 D~~~RvWDlRtgr~im~L~gH~---k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~  398 (459)
T KOG0272|consen  324 DSLGRVWDLRTGRCIMFLAGHI---KEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQ  398 (459)
T ss_pred             cchhheeecccCcEEEEecccc---cceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEeccc
Confidence            6668999999999999999988   9999999999999999999999999999999999999988854  599999998 


Q ss_pred             CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310          633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1103)
Q Consensus       633 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1103)
                      .|.+|++++.|++++||...+..+++.+.+|...|.++.++                      +|+..+++++.|.++++
T Consensus       399 ~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis----------------------~d~~~i~t~s~DRT~KL  456 (459)
T KOG0272|consen  399 EGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDIS----------------------PDSQAIATSSFDRTIKL  456 (459)
T ss_pred             CCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEec----------------------cCCceEEEeccCceeee
Confidence            78999999999999999999999999999999999999997                      78999999999999999


Q ss_pred             cc
Q 001310          713 EK  714 (1103)
Q Consensus       713 w~  714 (1103)
                      |.
T Consensus       457 W~  458 (459)
T KOG0272|consen  457 WR  458 (459)
T ss_pred             cc
Confidence            96

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=1.1e-36  Score=329.08  Aligned_cols=583  Identities=16%  Similarity=0.159  Sum_probs=434.6

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      .|- ..|..-|..++++.+-+.+..+||.+.-..+..                   -+.+...|+|++=..+  +..+++
T Consensus        36 ~VP-~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~~~--~vy~A~   93 (910)
T KOG1539|consen   36 GVP-FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASDKD--YVYVAS   93 (910)
T ss_pred             CCc-eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEecCc--eEEEec
Confidence            444 555555666788888899999999887766653                   2357788998886544  444443


Q ss_pred             CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-cee----EEeecCCCceEE
Q 001310          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRT----YSFEGHGAPVYS  490 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~----~~~~~~~~~v~~  490 (1103)
                      .. .|.+|.-  |+.++.  .+.+|...|.-+.  +-|.  .++++..++.+.||+...+ ..+    .-++...+.|++
T Consensus        94 g~-~i~~~~r--gk~i~~--~~~~~~a~v~~l~--~fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ita  164 (910)
T KOG1539|consen   94 GN-KIYAYAR--GKHIRH--TTLLHGAKVHLLL--PFGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITA  164 (910)
T ss_pred             Cc-EEEEEEc--cceEEE--EeccccceEEEEe--eecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceee
Confidence            33 3666543  433332  4567777777664  3466  6889999999999998874 221    222333334777


Q ss_pred             EEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1103)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1103)
                      +. ||+---+.++.|+.+|.+.+|++++++...++......|+++.-+|-=..++.|..    +|.|.+++++.++.+.+
T Consensus       165 l~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~s  239 (910)
T KOG1539|consen  165 LL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMS  239 (910)
T ss_pred             Ee-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEE
Confidence            64 44444457899999999999999999999999999999999999998889999876    66799999999999999


Q ss_pred             EecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEEEc-CCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310          571 YQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1103)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i  648 (1103)
                      |+...   +.|+.++|..||+.+++ |+..|.+-+||++..+.+..+. .|  ...+....|.|....+++++.|+.+++
T Consensus       240 Fk~d~---g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah--~~sv~~~~fl~~epVl~ta~~DnSlk~  314 (910)
T KOG1539|consen  240 FKQDW---GRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAH--YGSVTGATFLPGEPVLVTAGADNSLKV  314 (910)
T ss_pred             EEccc---cceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeeccc--cCCcccceecCCCceEeeccCCCceeE
Confidence            99766   89999999999976655 6677999999999988877665 34  345889999999999999999999998


Q ss_pred             EEcCCC----CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccce
Q 001310          649 LETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1103)
Q Consensus       649 w~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1103)
                      |-.+++    +.++...+|..+..++.|.                     ...|..+.+++.|++.+.+.+......+..
T Consensus       315 ~vfD~~dg~pR~LR~R~GHs~Pp~~irfy---------------------~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l  373 (910)
T KOG1539|consen  315 WVFDSGDGVPRLLRSRGGHSAPPSCIRFY---------------------GSQGHFILSAKQDRTLRSFSVISESQSQEL  373 (910)
T ss_pred             EEeeCCCCcchheeeccCCCCCchheeee---------------------ccCcEEEEecccCcchhhhhhhHHHHhHhh
Confidence            866543    5667778899999988887                     467888999999999988876532111110


Q ss_pred             eeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCC
Q 001310          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1103)
Q Consensus       725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  804 (1103)
                      ..             ......++         .+.+.                      .        ...    -.-.+
T Consensus       374 ~~-------------~~~~~~~k---------k~~~~----------------------~--------~~~----~k~p~  397 (910)
T KOG1539|consen  374 GQ-------------LHNKKRAK---------KVNVF----------------------S--------TEK----LKLPP  397 (910)
T ss_pred             cc-------------cccccccc---------ccccc----------------------c--------hhh----hcCCc
Confidence            00             00000000         00000                      0        000    01223


Q ss_pred             eeEEEEecC-----CCEEEEE-cCCeEEEEEcCCcee-eEEec-----CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310          805 VPCFALSKN-----DAYLFSA-SGGVISLYIVMTFKT-ILTIM-----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYN  872 (1103)
Q Consensus       805 v~~l~~s~d-----~~~l~~~-~dg~i~iwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1103)
                      |..+++...     ...++.. ++...+.|+...... ...+.     .....+++++.++ .|++.+.|+..|.|.+|+
T Consensus       398 i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fN  476 (910)
T KOG1539|consen  398 IVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFN  476 (910)
T ss_pred             ceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEE
Confidence            344443321     1222222 356788899876544 22222     2346899999999 999999999999999999


Q ss_pred             cCCceeEEEe---ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310          873 ARSSEVISKL---EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1103)
Q Consensus       873 ~~~~~~~~~l---~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  949 (1103)
                      +++|-....+   ..|.++|++++...-++.+++++.+|.++.||.+.......  +..       ...+.++..+....
T Consensus       477 mQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~--l~l-------~~~~~~iv~hr~s~  547 (910)
T KOG1539|consen  477 MQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKS--LRL-------GSSITGIVYHRVSD  547 (910)
T ss_pred             cccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeee--ecc-------CCCcceeeeeehhh
Confidence            9999988888   57999999999988889999999999999999998553221  111       12578888898888


Q ss_pred             EEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCC
Q 001310          950 RFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSH 1028 (1103)
Q Consensus       950 ~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1103)
                      .+|++ .|-.|.++|+.+.+.++. +.+|+..|+.++|||||++|++++.|++|++||+.++.++..+...         
T Consensus       548 l~a~~~ddf~I~vvD~~t~kvvR~-f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------  617 (910)
T KOG1539|consen  548 LLAIALDDFSIRVVDVVTRKVVRE-FWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------  617 (910)
T ss_pred             hhhhhcCceeEEEEEchhhhhhHH-hhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------
Confidence            88885 677899999998888887 7789999999999999999999999999999999999999776621         


Q ss_pred             CceeeEeeccCCceeeEEEEECCCCCcEEEEEecC-CcEEEEc
Q 001310         1029 DKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTN-GEVYVIE 1070 (1103)
Q Consensus      1029 ~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-g~v~vw~ 1070 (1103)
                                   .-+.+++|+|+ |++|+++..| ..|++|.
T Consensus       618 -------------~~~~sls~SPn-gD~LAT~Hvd~~gIylWs  646 (910)
T KOG1539|consen  618 -------------SPCTSLSFSPN-GDFLATVHVDQNGIYLWS  646 (910)
T ss_pred             -------------CcceeeEECCC-CCEEEEEEecCceEEEEE
Confidence                         22568899999 9999999999 6899996

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=3.6e-39  Score=305.03  Aligned_cols=298  Identities=19%  Similarity=0.286  Sum_probs=254.8

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      ..-+|++|+++|+.++..+.+..++.+++.|.++.+|++.......-            .  ....+.||+..|..++.+
T Consensus         7 l~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G------------~--~~r~~~GHsH~v~dv~~s   72 (315)
T KOG0279|consen    7 LRGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYG------------V--PVRRLTGHSHFVSDVVLS   72 (315)
T ss_pred             eeeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccC------------c--eeeeeeccceEecceEEc
Confidence            45689999999999999999877999999999999999876422110            0  112288999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC-
Q 001310          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-  484 (1103)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-  484 (1103)
                      +||.+.++++.|+++++||+.+|+..+   .|.||...|.+++|++|++  .+++|+.|++|++||+. |.+..++..+ 
T Consensus        73 ~dg~~alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~-g~ck~t~~~~~  146 (315)
T KOG0279|consen   73 SDGNFALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTL-GVCKYTIHEDS  146 (315)
T ss_pred             cCCceEEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeec-ccEEEEEecCC
Confidence            999999999999999999999996554   6889999999999999999  69999999999999954 5555665444 


Q ss_pred             -CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          485 -GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       485 -~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                       .+.|.+++|+|+++..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+.    ++.+.+||++
T Consensus       147 ~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~  222 (315)
T KOG0279|consen  147 HREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLN  222 (315)
T ss_pred             CcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEcc
Confidence             78999999999988899999999999999999999999999999999999999999999999875    6679999999


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC-------CCCCceEEEecCCCE
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPENPRICFNKNGTL  636 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~g~~  636 (1103)
                      .++.+..+...    ..|.+++|+|+...| ++..+..|+|||++++..+..+.....       .+...+++|++||..
T Consensus       223 ~~k~lysl~a~----~~v~sl~fspnrywL-~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~t  297 (315)
T KOG0279|consen  223 EGKNLYSLEAF----DIVNSLCFSPNRYWL-CAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQT  297 (315)
T ss_pred             CCceeEeccCC----CeEeeEEecCCceeE-eeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcE
Confidence            99998777653    589999999986554 444556699999999988877654321       233567899999999


Q ss_pred             EEEEECCCeEEEEEcC
Q 001310          637 LAVIANENRIKILETP  652 (1103)
Q Consensus       637 l~~~~~dg~i~iw~~~  652 (1103)
                      |+.|..|+.|++|.+.
T Consensus       298 Lf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  298 LFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEeeecCCcEEEEEee
Confidence            9999999999999864

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.3e-38  Score=325.87  Aligned_cols=481  Identities=17%  Similarity=0.265  Sum_probs=360.3

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      .+++..|++.|.++.|+|... ++.++-..|.|.|||.++...++.+++                   ...+|++..|-+
T Consensus         6 krk~~~rSdRVKsVd~HPteP-w~la~LynG~V~IWnyetqtmVksfeV-------------------~~~PvRa~kfia   65 (794)
T KOG0276|consen    6 KRKFQSRSDRVKSVDFHPTEP-WILAALYNGDVQIWNYETQTMVKSFEV-------------------SEVPVRAAKFIA   65 (794)
T ss_pred             hhHhhccCCceeeeecCCCCc-eEEEeeecCeeEEEecccceeeeeeee-------------------cccchhhheeee
Confidence            355667999999999999998 566677889999999999998876433                   567999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeecCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHG  485 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~  485 (1103)
                      -.+++++|+.|..|+||+..+++.++   .+..|.+.|.+++.+|...  +++|+|+|-+|++||.+.+ .+.++++||.
T Consensus        66 RknWiv~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~  140 (794)
T KOG0276|consen   66 RKNWIVTGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHE  140 (794)
T ss_pred             ccceEEEecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcc
Confidence            99999999999999999999998766   7889999999999999988  8999999999999999865 7789999999


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC--CEEEEEecCCCCceeEEEEeCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      ..|.+++|+|. |...+++++.|++|++|.+....+..++.+|...|+|+.+-+-|  .+|++++.    |..+.+||.+
T Consensus       141 HyVMqv~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQ  215 (794)
T KOG0276|consen  141 HYVMQVAFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQ  215 (794)
T ss_pred             eEEEEEEecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecc
Confidence            99999999986 55799999999999999999999999999999999999998844  68998875    7789999999


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d  643 (1103)
                      +..+++++.||.   ..|..+.|+|.-..+++|++||+++||+..+.+...++...  ...+++++-.+.++.+++|.+.
T Consensus       216 tk~CV~TLeGHt---~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~g--leRvW~I~~~k~~~~i~vG~De  290 (794)
T KOG0276|consen  216 TKSCVQTLEGHT---NNVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYG--LERVWCIAAHKGDGKIAVGFDE  290 (794)
T ss_pred             hHHHHHHhhccc---ccceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcC--CceEEEEeecCCCCeEEEeccC
Confidence            999999999999   89999999999999999999999999999998888887755  3468999999988899999998


Q ss_pred             CeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccc
Q 001310          644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC  723 (1103)
Q Consensus       644 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~  723 (1103)
                      |.|.+ .+....+...+.                                  +.|+.           +|-..       
T Consensus       291 g~i~v-~lgreeP~vsMd----------------------------------~~gKI-----------iwa~~-------  317 (794)
T KOG0276|consen  291 GSVTV-KLGREEPAVSMD----------------------------------SNGKI-----------IWAVH-------  317 (794)
T ss_pred             CcEEE-EccCCCCceeec----------------------------------CCccE-----------EEEcC-------
Confidence            87654 232221111110                                  11111           11100       


Q ss_pred             eeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCC-CC
Q 001310          724 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSN-SQ  802 (1103)
Q Consensus       724 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  802 (1103)
                                 +.|..+..       -+.+.++                           ++..|+.+. ...+..+ -.
T Consensus       318 -----------~ei~~~~~-------ks~~~~~---------------------------ev~DgErL~-LsvKeLgs~e  351 (794)
T KOG0276|consen  318 -----------SEIQAVNL-------KSVGAQK---------------------------EVTDGERLP-LSVKELGSVE  351 (794)
T ss_pred             -----------ceeeeeec-------eeccCcc---------------------------cccCCcccc-chhhhccccc
Confidence                       11111100       0000000                           111222110 0000000 11


Q ss_pred             CCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1103)
                      -....++-+|+|+++++++||.-.||..-..+     ....+......|++ |....|+-..++.|+++  ...+..+.+
T Consensus       352 iyPq~L~hsPNGrfV~VcgdGEyiIyTala~R-----nK~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi  423 (794)
T KOG0276|consen  352 IYPQTLAHSPNGRFVVVCGDGEYIIYTALALR-----NKAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSI  423 (794)
T ss_pred             cchHHhccCCCCcEEEEecCccEEEEEeeehh-----hcccccceeEEEcC-CCCeEEEEecCCceEEE--ecceecccc
Confidence            12345788999999999999998888743222     12345667788999 77788888888999998  566655555


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEE
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY  962 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iw  962 (1103)
                      ...-  +  ...--.|.+|...+ ++.+++||-++++....  +..         ....+.|+.+|.+++++.|...+++
T Consensus       424 ~~~~--~--~e~i~gg~Llg~~s-s~~~~fydW~~~~lVrr--I~v---------~~k~v~w~d~g~lVai~~d~Sfyil  487 (794)
T KOG0276|consen  424 RPDM--S--AEGIFGGPLLGVRS-SDFLCFYDWESGELVRR--IEV---------TSKHVYWSDNGELVAIAGDDSFYIL  487 (794)
T ss_pred             cccc--c--eeeecCCceEEEEe-CCeEEEEEcccceEEEE--Eee---------ccceeEEecCCCEEEEEecCceeEE
Confidence            4211  1  11112355555555 45599999999775442  222         2347999999999999888776666


Q ss_pred             ECC
Q 001310          963 EAE  965 (1103)
Q Consensus       963 d~~  965 (1103)
                      ...
T Consensus       488 ~~n  490 (794)
T KOG0276|consen  488 KFN  490 (794)
T ss_pred             Eec
Confidence            554

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=3.2e-39  Score=349.31  Aligned_cols=279  Identities=18%  Similarity=0.259  Sum_probs=244.5

Q ss_pred             cccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeee--------eeeeeEe----ecccccc
Q 001310          318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF--------IRNFKVW----DIGACSM  385 (1103)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~--------~~~~~~~----~~~~~~~  385 (1103)
                      ....+|.-|..++..-...++|..||+|++ ++|.|..|..|++|.+...+...        ......-    |...-..
T Consensus       362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~  440 (707)
T KOG0263|consen  362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS  440 (707)
T ss_pred             CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence            357788999999988888999999999998 89999999999999998533111        0000000    1111112


Q ss_pred             ceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310          386 LFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1103)
Q Consensus       386 ~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~  465 (1103)
                      ......+.||+++|..+.|+||.++|++|+.|++|++|.+.+..++.   ...||..+|+++.|+|-|-  ++||+|.|+
T Consensus       441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~  515 (707)
T KOG0263|consen  441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQ  515 (707)
T ss_pred             CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCc
Confidence            23344588999999999999999999999999999999999987665   6789999999999999998  899999999


Q ss_pred             ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEE
Q 001310          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1103)
                      +.++|......+++.+.+|-+.|.|+.|||  +..++++||.|.+||+||..++..+..+.+|..+|.+++|||+|++|+
T Consensus       516 tArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La  593 (707)
T KOG0263|consen  516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA  593 (707)
T ss_pred             eeeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence            999999999999999999999999999987  557999999999999999999999999999999999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  611 (1103)
                      +++.    ++.|.+||+.+++.+..+.+|.   +.|.++.|+.+|..|++|+.|.+|++||+..-.
T Consensus       594 Sg~e----d~~I~iWDl~~~~~v~~l~~Ht---~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~  652 (707)
T KOG0263|consen  594 SGDE----DGLIKIWDLANGSLVKQLKGHT---GTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI  652 (707)
T ss_pred             eccc----CCcEEEEEcCCCcchhhhhccc---CceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence            9975    7779999999999999999997   999999999999999999999999999987543

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=1.6e-38  Score=302.38  Aligned_cols=295  Identities=17%  Similarity=0.250  Sum_probs=268.1

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ...++|+||.+.|.++.|++|.+ .++++|.||.++|||.-|...++-                   ++-....|..+||
T Consensus        46 ~~rr~LkGH~~Ki~~~~ws~Dsr-~ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA~  105 (343)
T KOG0286|consen   46 RTRRTLKGHLNKIYAMDWSTDSR-RIVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCAY  105 (343)
T ss_pred             eeEEEecccccceeeeEecCCcC-eEEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEEE
Confidence            34489999999999999999998 589999999999999988876654                   3336789999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCC--C-ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGG--S-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~--~-~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  481 (1103)
                      +|.|+++|+|+-|+...||++.+.  + ..+....+.+|++.+.|+.|.+|+.   |+|++.|.+..+||+++|+.+..|
T Consensus       106 sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~f  182 (343)
T KOG0286|consen  106 SPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQVF  182 (343)
T ss_pred             CCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEEe
Confidence            999999999999999999999865  2 2344457899999999999999886   999999999999999999999999


Q ss_pred             ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1103)
                      .+|.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|++++|.|+|.-+++|+.    ++..++||
T Consensus       183 ~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRlyD  257 (343)
T KOG0286|consen  183 HGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLYD  257 (343)
T ss_pred             cCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEEe
Confidence            999999999999875 7789999999999999999999999999999999999999999999999975    67799999


Q ss_pred             CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      ++..+.+..+.... ...+|++++|+..|++|++|..|.++.+||.-.++.+..+.+|.+  .|.++..+|||.-+++|+
T Consensus       258 lRaD~~~a~ys~~~-~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS  334 (343)
T KOG0286|consen  258 LRADQELAVYSHDS-IICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS  334 (343)
T ss_pred             ecCCcEEeeeccCc-ccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence            99999998888533 456899999999999999999999999999999999999998754  699999999999999999


Q ss_pred             CCCeEEEEE
Q 001310          642 NENRIKILE  650 (1103)
Q Consensus       642 ~dg~i~iw~  650 (1103)
                      .|..++||.
T Consensus       335 WDs~lriW~  343 (343)
T KOG0286|consen  335 WDSTLRIWA  343 (343)
T ss_pred             hhHheeecC
Confidence            999999994

>KOG1539 consensus WD repeat protein [General function prediction only]

Probab=100.00  E-value=4.9e-36  Score=324.14  Aligned_cols=547  Identities=13%  Similarity=0.149  Sum_probs=405.8

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~  410 (1103)
                      ..+.+.|+|++-..+-- ++|.|   ..|.+|.  .|+.+..                  +..+|...|.-+..  =|.+
T Consensus        73 ~~lp~~I~alas~~~~v-y~A~g---~~i~~~~--rgk~i~~------------------~~~~~~a~v~~l~~--fGe~  126 (910)
T KOG1539|consen   73 KPLPDKITALASDKDYV-YVASG---NKIYAYA--RGKHIRH------------------TTLLHGAKVHLLLP--FGEH  126 (910)
T ss_pred             CCCCCceEEEEecCceE-EEecC---cEEEEEE--ccceEEE------------------EeccccceEEEEee--ecce
Confidence            46788999999887753 34443   4566665  3433321                  25567777776653  4889


Q ss_pred             EEEEeCCCeEEEEEecCC-CccccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310          411 LGVAYSKHIVQLYAYHGG-SDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1103)
Q Consensus       411 las~~~d~~i~iwd~~~~-~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  488 (1103)
                      ++++..++.+.||+..++ +.......+. .....|+++. +|..--..++.|+.+|.+.+|++++++.+++++++...|
T Consensus       127 lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~I  205 (910)
T KOG1539|consen  127 LIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRI  205 (910)
T ss_pred             EEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEecccccce
Confidence            999999999999999885 2211111222 2222377764 454321258889999999999999999999999999999


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      +++.-+|.-  ..++.|..+|+|.+++++..+....++...++|++++|..||..+.+.+.   ..|.+.+||++..+.+
T Consensus       206 T~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~  280 (910)
T KOG1539|consen  206 TAIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLI  280 (910)
T ss_pred             eEeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeee
Confidence            999876544  58999999999999999999999999988899999999999998877654   2566999999998887


Q ss_pred             EEEe-cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CC--eeEEEEcCCCCCCCCceEEEe-cCCCEEEEEEC
Q 001310          569 RTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KV--QLLTTIDAGGGLPENPRICFN-KNGTLLAVIAN  642 (1103)
Q Consensus       569 ~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~--~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~  642 (1103)
                      .... .|.   +.+....|.|....+++++.|+.+++|=.+  +|  +.++.-.  +|..+..++.|. .+|..+.+++.
T Consensus       281 ~v~~nah~---~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~--GHs~Pp~~irfy~~~g~~ilsa~~  355 (910)
T KOG1539|consen  281 NVTRNAHY---GSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRG--GHSAPPSCIRFYGSQGHFILSAKQ  355 (910)
T ss_pred             eeeecccc---CCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeecc--CCCCCchheeeeccCcEEEEeccc
Confidence            7776 444   789999999999999999999999988554  34  2333333  345667899988 68999999999


Q ss_pred             CCeEEEEEcCCCCeeEeccc------------------cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceee
Q 001310          643 ENRIKILETPESNSVDAAGV------------------LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  704 (1103)
Q Consensus       643 dg~i~iw~~~~~~~~~~~~~------------------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  704 (1103)
                      |++++.+++.....-+.+..                  .-.+|..+++.-...                 ....+.+..-
T Consensus       356 Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE-----------------~~W~Nv~~~h  418 (910)
T KOG1539|consen  356 DRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENARE-----------------KEWDNVITAH  418 (910)
T ss_pred             CcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchh-----------------hhhcceeEEe
Confidence            99999888753211111100                  011122122110000                 1122333344


Q ss_pred             ccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeec
Q 001310          705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  784 (1103)
Q Consensus       705 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  784 (1103)
                      -.+...+.|+......++...-.-+.......+.+++.++.|++.+.|.+.|.|.+|+++.+-.                
T Consensus       419 ~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~----------------  482 (910)
T KOG1539|consen  419 KGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH----------------  482 (910)
T ss_pred             cCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCee----------------
Confidence            4556788899876555443332222223457789999999999999999999999988776421                


Q ss_pred             CCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 001310          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1103)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1103)
                            ...+- ....|..+|+.++...-++.+++++ +|-+++||......+..+. -...++++..+. ...++|.+.
T Consensus       483 ------r~sf~-~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~-l~~~~~~iv~hr-~s~l~a~~~  553 (910)
T KOG1539|consen  483 ------RKSFG-DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLR-LGSSITGIVYHR-VSDLLAIAL  553 (910)
T ss_pred             ------ecccc-cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeec-cCCCcceeeeee-hhhhhhhhc
Confidence                  11110 1124999999999999899999887 8999999999888777766 445778888887 677999999


Q ss_pred             CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310          864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1103)
                      .|-.|+++|..+.+.++.|.||.+.|++++|||||++|++++.|++|++||+.++.+.....+.         .+..++.
T Consensus       554 ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~vd---------~~~~sls  624 (910)
T KOG1539|consen  554 DDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLVD---------SPCTSLS  624 (910)
T ss_pred             CceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEecC---------CcceeeE
Confidence            9999999999999999999999999999999999999999999999999999998865533222         2578999


Q ss_pred             EcCCCCEEEEE-eC-CeEEEEECC
Q 001310          944 FHKDQTRFLLV-HE-THLAIYEAE  965 (1103)
Q Consensus       944 fs~dg~~l~~~-~d-~~v~iwd~~  965 (1103)
                      |||.|.+||++ .| ..|++|.-.
T Consensus       625 ~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  625 FSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ECCCCCEEEEEEecCceEEEEEch
Confidence            99999999996 34 569999754

>KOG0286 consensus G-protein beta subunit [General function prediction only]

Probab=100.00  E-value=2.2e-37  Score=294.56  Aligned_cols=287  Identities=15%  Similarity=0.172  Sum_probs=265.8

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      +|+||.+.|.++.|++|+++|++++.||.+.|||.-+.....   .+.-....|..++|+|.|+  ++++|+-|+...||
T Consensus        50 ~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csiy  124 (343)
T KOG0286|consen   50 TLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSIY  124 (343)
T ss_pred             EecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEEE
Confidence            388999999999999999999999999999999998875444   4556677899999999999  89999999999999


Q ss_pred             eCCCC------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCCE
Q 001310          471 DAVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRR  543 (1103)
Q Consensus       471 d~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~  543 (1103)
                      ++.+.      +..+.+.+|.+.+.++.|..   ...|++++.|.+..+||+++++....+.+|.+.|.++.++| +++.
T Consensus       125 ~ls~~d~~g~~~v~r~l~gHtgylScC~f~d---D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~nt  201 (343)
T KOG0286|consen  125 PLSTRDAEGNVRVSRELAGHTGYLSCCRFLD---DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNT  201 (343)
T ss_pred             ecccccccccceeeeeecCccceeEEEEEcC---CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCe
Confidence            99865      34567899999999999864   35899999999999999999999999999999999999999 9999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1103)
                      +++++.    +...++||++.+..++.|.+|+   ..|+++.|.|+|.-+++|++|++.++||++..+.+..+.......
T Consensus       202 FvSg~c----D~~aklWD~R~~~c~qtF~ghe---sDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~  274 (343)
T KOG0286|consen  202 FVSGGC----DKSAKLWDVRSGQCVQTFEGHE---SDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIIC  274 (343)
T ss_pred             EEeccc----ccceeeeeccCcceeEeecccc---cccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccC
Confidence            999987    5569999999999999999999   999999999999999999999999999999999999998777777


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1103)
                      +|++++||..|++|.+|..|..+.+||.-.++.+..+.+|.+.|.++.++                      |||..+++
T Consensus       275 gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s----------------------~DG~av~T  332 (343)
T KOG0286|consen  275 GITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHENRVSCLGVS----------------------PDGMAVAT  332 (343)
T ss_pred             CceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCCeeEEEEEC----------------------CCCcEEEe
Confidence            89999999999999999999999999999999999999999999999997                      78888999


Q ss_pred             ecccccccccc
Q 001310          704 VEAENKSEVEK  714 (1103)
Q Consensus       704 ~~~d~~i~~w~  714 (1103)
                      |+.|..+|+|.
T Consensus       333 gSWDs~lriW~  343 (343)
T KOG0286|consen  333 GSWDSTLRIWA  343 (343)
T ss_pred             cchhHheeecC
Confidence            99999999994

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=5.3e-37  Score=284.90  Aligned_cols=293  Identities=17%  Similarity=0.279  Sum_probs=251.7

Q ss_pred             CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEe
Q 001310          346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAY  425 (1103)
Q Consensus       346 g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~  425 (1103)
                      ..-+|++++.|.+|++|...+|.+.++                   +....+.|..+.+.||+++||+++... |++||+
T Consensus         9 ~~viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~qh-vRlyD~   68 (311)
T KOG0315|consen    9 DPVILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQH-VRLYDL   68 (311)
T ss_pred             CceEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCCe-eEEEEc
Confidence            335899999999999999999999987                   333568999999999999999997665 999999


Q ss_pred             cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE
Q 001310          426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  505 (1103)
Q Consensus       426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  505 (1103)
                      .++..- +..++.+|...|+++.|..||+  .+++||.||+++|||++...+.+.++ |..+|+++.++|  +..-|++|
T Consensus        69 ~S~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhp--nQteLis~  142 (311)
T KOG0315|consen   69 NSNNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHP--NQTELISG  142 (311)
T ss_pred             cCCCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecC--CcceEEee
Confidence            998753 5668999999999999999999  89999999999999999977777665 779999999977  44689999


Q ss_pred             ECCCeEEEEEcCCCCeeEEe-cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe------eEEEEecccccC
Q 001310          506 SVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA------IKRTYQGLQLQH  578 (1103)
Q Consensus       506 ~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~~~~~~  578 (1103)
                      ..+|.|++||+.+......+ ......|.+++..|||.+++.+..    .|..++|++-++.      ++.+++.|.   
T Consensus       143 dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~---  215 (311)
T KOG0315|consen  143 DQSGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHN---  215 (311)
T ss_pred             cCCCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheeccc---
Confidence            99999999999988665544 344568999999999999999865    6679999987643      345566666   


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                      +.+..+.++|++++|+++|.|.+++||+.++. +....+.++  ...+..++||.||++|++++.|+..++|++..++.+
T Consensus       216 ~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh--~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v  293 (311)
T KOG0315|consen  216 GHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGH--QRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEV  293 (311)
T ss_pred             ceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecC--CceEEeeeeccCccEEEecCCCCceeecccccCcee
Confidence            88999999999999999999999999999988 444444444  457899999999999999999999999999999999


Q ss_pred             EeccccccceeeeEEe
Q 001310          658 DAAGVLSDNLRKLSVN  673 (1103)
Q Consensus       658 ~~~~~~~~~i~~~~~~  673 (1103)
                      ....+|.....|++..
T Consensus       294 ~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  294 RQYQGHHKAAVCVALN  309 (311)
T ss_pred             eecCCcccccEEEEee
Confidence            9999998888777664

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=6.5e-35  Score=315.96  Aligned_cols=582  Identities=16%  Similarity=0.229  Sum_probs=401.1

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~  409 (1103)
                      ++..+..|..++|+|... ++.++-..|.|.+||..-+.++..                   +.+|.++|+.++|+|++.
T Consensus         5 fEskSsRvKglsFHP~rP-wILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qp   64 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRP-WILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQP   64 (1202)
T ss_pred             hhcccccccceecCCCCC-EEEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCC
Confidence            345567999999999987 577888899999999999998876                   778999999999999999


Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceE
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  489 (1103)
                      ++++|+.|..|+||+.++.+++.   ++.||.+.|..+.|++.-.  +++|+|+|.+|+||++.+++++..++||...|.
T Consensus        65 lFVSGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVM  139 (1202)
T KOG0292|consen   65 LFVSGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVM  139 (1202)
T ss_pred             eEEecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEE
Confidence            99999999999999999987766   7889999999999999877  899999999999999999999999999999999


Q ss_pred             EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1103)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1103)
                      |..|+|+.|  .++++|-|.+||+||+...+....-.+      ++.=...+..+.           .-++--..--...
T Consensus       140 cAqFhptED--lIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~~-----------~dLfg~~DaVVK~  200 (1202)
T KOG0292|consen  140 CAQFHPTED--LIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQGN-----------SDLFGQTDAVVKH  200 (1202)
T ss_pred             eeccCCccc--eEEEecccceEEEEeecchhccCCCCC------Cchhhhhccccc-----------hhhcCCcCeeeee
Confidence            999998764  899999999999999876443322211      000000111100           0011111122345


Q ss_pred             EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1103)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw  649 (1103)
                      .+.||.   ..|+.++|+|.-..+++|++|..|++|.+..-+.-..-...+|...|.++-|+|..+++++.+.|++|++|
T Consensus       201 VLEGHD---RGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw  277 (1202)
T KOG0292|consen  201 VLEGHD---RGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW  277 (1202)
T ss_pred             eecccc---cccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence            677888   89999999999999999999999999999865544444444556789999999999999999999999999


Q ss_pred             EcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCC-----CCCCccceeeccccccccccccccCCccce
Q 001310          650 ETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDP-----KEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1103)
Q Consensus       650 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-----s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1103)
                      |+...+.++.++...+..+.++..|.....+.|-+.|.+.|.-+.     .-.++.+...- |..|+.+|+.+.......
T Consensus       278 Dm~kRt~v~tfrrendRFW~laahP~lNLfAAgHDsGm~VFkleRErpa~~v~~n~LfYvk-d~~i~~~d~~t~~d~~v~  356 (1202)
T KOG0292|consen  278 DMTKRTSVQTFRRENDRFWILAAHPELNLFAAGHDSGMIVFKLERERPAYAVNGNGLFYVK-DRFIRSYDLRTQKDTAVA  356 (1202)
T ss_pred             ecccccceeeeeccCCeEEEEEecCCcceeeeecCCceEEEEEcccCceEEEcCCEEEEEc-cceEEeeeccccccceeE
Confidence            999999999999999999999999999999999999988884331     12233343333 788899998875555555


Q ss_pred             eeeccCccccccEEEEEEecCCcEEEEee--cCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCC
Q 001310          725 SLLLPSKVKANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  802 (1103)
Q Consensus       725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (1103)
                      .++.+.. ...+..++.++|....++.++  ..|...++.++.........            ...           -..
T Consensus       357 ~lr~~g~-~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~------------~~~-----------~k~  412 (1202)
T KOG0292|consen  357 SLRRPGT-LWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG------------KDV-----------KKG  412 (1202)
T ss_pred             eccCCCc-ccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc------------hhh-----------hcC
Confidence            4443332 346788999999877665553  34666666665432100000            000           011


Q ss_pred             CCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1103)
                      ....++-.+.++-.+..-++..+.+-++.. +..+.+... ..+..+-+.- .|.+|+.  ....|.++|+...+.+..+
T Consensus       413 tG~~a~fvarNrfavl~k~~~~v~ik~l~N-~vtkkl~~~-~~~~~IF~ag-~g~lll~--~~~~v~lfdvQq~~~~~si  487 (1202)
T KOG0292|consen  413 TGEGALFVARNRFAVLDKSNEQVVIKNLKN-KVTKKLLLP-ESTDDIFYAG-TGNLLLR--SPDSVTLFDVQQKKKVGSI  487 (1202)
T ss_pred             CCCceEEEEecceEEEEecCcceEEecccc-hhhhcccCc-ccccceeecc-CccEEEE--cCCeEEEEEeecceEEEEE
Confidence            222223233332222222234444444432 222333222 2333444444 5555543  3457999999988877777


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEE
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY  962 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iw  962 (1103)
                      +  ...|.-+.||+|..++|--+. .+|.|.+.+-.-      +......    -.|.+-+|..+|-+|.+..+.-=  |
T Consensus       488 ~--~s~vkyvvws~dm~~vAll~K-h~i~i~~kkL~l------~~sihEt----iriksgawde~gVfiYtT~nHik--Y  552 (1202)
T KOG0292|consen  488 K--VSKVKYVVWSNDMSRVALLSK-HTITIADKKLEL------LCSIHET----IRIKSGAWDEDGVFIYTTLNHIK--Y  552 (1202)
T ss_pred             e--cCceeEEEEcCccchhhhccc-ceEEEEecchhh------eecchhe----eEeeeceeccCceEEEEehhhhh--h
Confidence            6  457889999999988877664 458888765411      1111111    14677888888888877543211  1


Q ss_pred             ECCCce--EEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          963 EAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       963 d~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      -+.+|.  .+.+ +   ..++.-..  -.|..++.-..|+.+.+.+++.
T Consensus       553 al~~GD~GIikT-L---d~~iyitk--v~gn~V~cl~rd~~~~~~~IDp  595 (1202)
T KOG0292|consen  553 ALENGDSGIIKT-L---DKPIYITK--VKGNKVFCLNRDGEIECLTIDP  595 (1202)
T ss_pred             hhccCCcceEEe-c---ccceEEEE--eeCCEEEEEecCCCeEEEeech
Confidence            111111  1111 1   11222122  2466666667777777777764

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=4.4e-35  Score=306.00  Aligned_cols=465  Identities=15%  Similarity=0.219  Sum_probs=343.6

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +..|+.+|.++.|+|...+++++-.+|.|.|||.++...++   .+.-..-+|.+..|-+--+  ++++|++|..|+||+
T Consensus         9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn   83 (794)
T KOG0276|consen    9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN   83 (794)
T ss_pred             hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence            44589999999999999999999999999999999987776   5666778999999998777  899999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC-CeeEEecCCCccEEEEEEcc-CCCEEEEEec
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1103)
                      ..|++.+..|..|.+.|++++.||..  .+++++|.|-+|++||++.. .+..++.+|.+-|.+++|.| |.+.+++++-
T Consensus        84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL  161 (794)
T KOG0276|consen   84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL  161 (794)
T ss_pred             cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence            99999999999999999999998864  69999999999999999876 45678999999999999999 6778888887


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                          |++|.+|.+.+..+..++.+|.   ..|+++.+-+-  .+++++|++|.+|+|||..+..+++++.+|.+  .|..
T Consensus       162 ----DrTVKVWslgs~~~nfTl~gHe---kGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~  232 (794)
T KOG0276|consen  162 ----DRTVKVWSLGSPHPNFTLEGHE---KGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSF  232 (794)
T ss_pred             ----cccEEEEEcCCCCCceeeeccc---cCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceE
Confidence                6679999999999999999998   89999999764  47999999999999999999999999998854  5999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      +.|+|.-..+++|+.||+++||+..+-+....+....+.++|++..                                  
T Consensus       233 v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~----------------------------------  278 (794)
T KOG0276|consen  233 VFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAH----------------------------------  278 (794)
T ss_pred             EEecCCCcEEEEecCCccEEEecCcceehhhhhhcCCceEEEEeec----------------------------------
Confidence            9999999999999999999999988776655555444445544444                                  


Q ss_pred             cccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCC
Q 001310          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1103)
Q Consensus       708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1103)
                                                          +.+..++.|..+|.+.+=                          
T Consensus       279 ------------------------------------k~~~~i~vG~Deg~i~v~--------------------------  296 (794)
T KOG0276|consen  279 ------------------------------------KGDGKIAVGFDEGSVTVK--------------------------  296 (794)
T ss_pred             ------------------------------------CCCCeEEEeccCCcEEEE--------------------------
Confidence                                                333334444444433320                          


Q ss_pred             CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC--CeEEEE------EcCCceee----EEecCCCCCeeEEEEcCCC
Q 001310          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG--GVISLY------IVMTFKTI----LTIMPPSPTATSLAFNPHD  855 (1103)
Q Consensus       788 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d--g~i~iw------d~~~~~~~----~~~~~~~~~i~~l~~s~~d  855 (1103)
                                   .......+..++.|+.+-+...  -.+.+-      +++.|+.+    +.+-...-....++-+| +
T Consensus       297 -------------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-N  362 (794)
T KOG0276|consen  297 -------------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-N  362 (794)
T ss_pred             -------------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-C
Confidence                         0001112222333322222110  001111      22222221    11111112335678899 8


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1103)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1103)
                      |+++++++ ||.-.||..-..+     ..+.+.-....|++|.+..|+--.++.|+++  ++.+..+  .+..       
T Consensus       363 GrfV~Vcg-dGEyiIyTala~R-----nK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~k--si~~-------  425 (794)
T KOG0276|consen  363 GRFVVVCG-DGEYIIYTALALR-----NKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHK--SIRP-------  425 (794)
T ss_pred             CcEEEEec-CccEEEEEeeehh-----hcccccceeEEEcCCCCeEEEEecCCceEEE--ecceecc--cccc-------
Confidence            88777665 8888888632211     1244566778999998888888888889988  4433222  1111       


Q ss_pred             CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       936 ~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                         -..+.+--.|.+|.+..++.+++||.++++.++.+-    -....+.|+.+|.+++.++.| ..++..+
T Consensus       426 ---~~~~e~i~gg~Llg~~ss~~~~fydW~~~~lVrrI~----v~~k~v~w~d~g~lVai~~d~-Sfyil~~  489 (794)
T KOG0276|consen  426 ---DMSAEGIFGGPLLGVRSSDFLCFYDWESGELVRRIE----VTSKHVYWSDNGELVAIAGDD-SFYILKF  489 (794)
T ss_pred             ---ccceeeecCCceEEEEeCCeEEEEEcccceEEEEEe----eccceeEEecCCCEEEEEecC-ceeEEEe
Confidence               111333345677777899999999999999998743    245678999999988887755 3455543

>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]

Probab=100.00  E-value=5.5e-35  Score=309.67  Aligned_cols=600  Identities=15%  Similarity=0.188  Sum_probs=405.8

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCc-eEEEEEcCCCceEEEeCCCC--cee
Q 001310          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVWDAVTG--SRT  478 (1103)
Q Consensus       402 ~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iwd~~~~--~~~  478 (1103)
                      .+|.| +..+|.| ....|.+||....   .....+.||..+|+|+.|-|+.+. ..+++|+.|+.|.+|.++..  .++
T Consensus        20 ~sw~~-~~~vafG-a~~~Iav~dp~k~---~i~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i   94 (764)
T KOG1063|consen   20 SSWGP-GGLVAFG-AGPAIAVADPEKI---LIVTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI   94 (764)
T ss_pred             ccccc-cceEEec-CCceEEEeCcccc---eeEEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE
Confidence            34544 3345555 4567999998775   233478899999999999987651 15899999999999998843  345


Q ss_pred             EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCc--cEEEEEEcc-CCCEEEEEecCCCC
Q 001310          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSA-NGRRLFSCGTSKEG  553 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~s~-dg~~l~~~~~~~~~  553 (1103)
                      .++.+|...+.++.-..    ....+...|+++.+||.+..+.  ...+....+  -..|+++.+ .+.++.+++.+   
T Consensus        95 ~~~~g~~~~~~cv~a~~----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs---  167 (764)
T KOG1063|consen   95 YTIQGHCKECVCVVARS----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGS---  167 (764)
T ss_pred             EeecCcceeEEEEEeee----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCc---
Confidence            67777776666553211    1223337899999999855441  112222222  234566666 45555555432   


Q ss_pred             ceeEEEEeCCCC--eeEEEEecccccCCceEEEEEcCCCC---EEEEEeCCCcEEEEECCCCe-----------------
Q 001310          554 ESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKD---QILAAGDDHVIKIWDMNKVQ-----------------  611 (1103)
Q Consensus       554 ~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~-----------------  611 (1103)
                      +..|.++.-...  +.+..+.||.   +.|.+++|...+.   +++++|.|..||||.+.-+.                 
T Consensus       168 ~~~v~~~s~~~d~f~~v~el~GH~---DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~  244 (764)
T KOG1063|consen  168 KFVVDLYSSSADSFARVAELEGHT---DWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNL  244 (764)
T ss_pred             ceEEEEeccCCcceeEEEEeeccc---hhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCC
Confidence            556777655433  5567788888   9999999986554   77889999999999764322                 


Q ss_pred             ----eEEEEc--------CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC--eeEeccccccceeeeEEecCCc
Q 001310          612 ----LLTTID--------AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPIST  677 (1103)
Q Consensus       612 ----~~~~~~--------~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~  677 (1103)
                          ....+.        ..+|..-|.++.|+|.+..|.+++.|.++.+|.-.+..  .+...+.....           
T Consensus       245 ~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~g-----------  313 (764)
T KOG1063|consen  245 PVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVG-----------  313 (764)
T ss_pred             ceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeeccc-----------
Confidence                111111        11445679999999999999999999999999877552  22222211000           


Q ss_pred             eeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCce
Q 001310          678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV  757 (1103)
Q Consensus       678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~  757 (1103)
                          |...|  -+.+-.+|++..+++-+..|..++|.  +.+.......... .+|.+.|..++|.|.|.++++.+.|.+
T Consensus       314 ----g~a~G--F~g~lw~~n~~~ii~~g~~Gg~hlWk--t~d~~~w~~~~~i-SGH~~~V~dv~W~psGeflLsvs~DQT  384 (764)
T KOG1063|consen  314 ----GSAGG--FWGGLWSPNSNVIIAHGRTGGFHLWK--TKDKTFWTQEPVI-SGHVDGVKDVDWDPSGEFLLSVSLDQT  384 (764)
T ss_pred             ----ccccc--eeeEEEcCCCCEEEEecccCcEEEEe--ccCccceeecccc-ccccccceeeeecCCCCEEEEeccccc
Confidence                00000  11122257888899999999999998  2233333332222 479999999999999999999999998


Q ss_pred             EEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC-CeEEEEEcCC----
Q 001310          758 HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT----  832 (1103)
Q Consensus       758 i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d-g~i~iwd~~~----  832 (1103)
                      -+++---..+.             -|.-     +...    +-|...++|+++-+....+++|.| ..+++|+...    
T Consensus       385 TRlFa~wg~q~-------------~wHE-----iaRP----QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~  442 (764)
T KOG1063|consen  385 TRLFARWGRQQ-------------EWHE-----IARP----QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVK  442 (764)
T ss_pred             eeeeccccccc-------------ceee-----eccc----ccccccceeeehccCCceeeecccceeeeeecCcHHHHH
Confidence            88875221100             0211     1111    138888999999885555666654 5578887421    


Q ss_pred             ---------------------------------------cee---------------------------------eEEec
Q 001310          833 ---------------------------------------FKT---------------------------------ILTIM  840 (1103)
Q Consensus       833 ---------------------------------------~~~---------------------------------~~~~~  840 (1103)
                                                             |..                                 ++.+.
T Consensus       443 ~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLY  522 (764)
T KOG1063|consen  443 SLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLY  522 (764)
T ss_pred             HHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhc
Confidence                                                   000                                 01345


Q ss_pred             CCCCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 001310          841 PPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV  915 (1103)
Q Consensus       841 ~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~  915 (1103)
                      +|...|.+++.+| +++++|+++..     ..|++|+..+...++.+.+|+-.|+.++|||||++|++++.|+++.+|+.
T Consensus       523 GHGyEv~~l~~s~-~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~  601 (764)
T KOG1063|consen  523 GHGYEVYALAISP-TGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEV  601 (764)
T ss_pred             cCceeEEEEEecC-CCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeee
Confidence            7888999999999 89999998754     48999999999989999999999999999999999999999999999998


Q ss_pred             CCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCc--eEEEE-eeCCCCcCeEEEEEcc---
Q 001310          916 DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL--TCLKQ-WFPISSVPISQATFSC---  988 (1103)
Q Consensus       916 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~--~~~~~-~~~~h~~~v~~l~fs~---  988 (1103)
                      ..+...... +...+.|.   .-|.++.|+||+.++|++ .|.+|.+|.....  +.+.. -...++.+|+++++.|   
T Consensus       602 ~~~~~~e~~-fa~~k~Ht---RIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~  677 (764)
T KOG1063|consen  602 QEDIKDEFR-FACLKAHT---RIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDH  677 (764)
T ss_pred             ecccchhhh-hccccccc---eEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeecccc
Confidence            764432221 22233443   368999999999999995 8999999999887  55444 2345689999999987   


Q ss_pred             -C-CCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCC---------CCcEE
Q 001310          989 -D-CRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPL---------KPTQF 1057 (1103)
Q Consensus       989 -d-g~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~---------~~~~l 1057 (1103)
                       + +..+++|-+.|.|.+|....-....... ...      ....+|...+|.+.|..  +.+.|-         +...|
T Consensus       678 ~e~~~~vavGle~GeI~l~~~~~~~~~~~~~-~~~------~~~~l~~~~~~~~aV~r--l~w~p~~~~~~~~~~~~l~l  748 (764)
T KOG1063|consen  678 NEKGDVVAVGLEKGEIVLWRRKREHRQVTVG-TFN------LDTRLCATIGPDSAVNR--LLWRPTCSDDWVEDKEWLNL  748 (764)
T ss_pred             ccccceEEEEecccEEEEEecccccccccce-eee------eccccccccChHHhhhe--eEeccccccccccccceeEE
Confidence             2 2367888899999999976222111111 000      11223334456666764  444442         13467


Q ss_pred             EEEecCCcEEEEccC
Q 001310         1058 AVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1058 ~~~~~dg~v~vw~~~ 1072 (1103)
                      ++|++|..++++++.
T Consensus       749 a~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  749 AVGGDDESVRIFNVD  763 (764)
T ss_pred             eeecccceeEEeecc
Confidence            999999999999873

>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]

Probab=100.00  E-value=1.6e-35  Score=280.42  Aligned_cols=296  Identities=16%  Similarity=0.161  Sum_probs=247.6

Q ss_pred             ccccccEEEEEEecC-CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEE
Q 001310          731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  809 (1103)
Q Consensus       731 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  809 (1103)
                      .+|.+.|..++..+. ...++.++.|..+.+|++...                 |...|.....  +.  +|...|..++
T Consensus        12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~d-----------------d~~~G~~~r~--~~--GHsH~v~dv~   70 (315)
T KOG0279|consen   12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSD-----------------DIKYGVPVRR--LT--GHSHFVSDVV   70 (315)
T ss_pred             cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccC-----------------ccccCceeee--ee--ccceEecceE
Confidence            569999999999887 456778888999999998764                 2334433333  22  5999999999


Q ss_pred             EecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-CCC
Q 001310          810 LSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSK  887 (1103)
Q Consensus       810 ~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~  887 (1103)
                      .++||++.++++ |+++++||+.+++..+.|.+|...|.+++|++ |.+.+++|+.|.+|++|++........... |++
T Consensus        71 ~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~-dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~  149 (315)
T KOG0279|consen   71 LSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFST-DNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHRE  149 (315)
T ss_pred             EccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecC-CCceeecCCCcceeeeeeecccEEEEEecCCCcC
Confidence            999999999998 89999999999999999999999999999999 899999999999999999886544433333 388


Q ss_pred             CEEEEEEccC--CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEEC
Q 001310          888 RVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEA  964 (1103)
Q Consensus       888 ~V~~l~~s~d--g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~  964 (1103)
                      .|.|+.|+|+  ..+++++|.|++|++||+.+.+     ....+.||..   .++.+++||||.+.+.| .||.+.+||+
T Consensus       150 WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~-----l~~~~~gh~~---~v~t~~vSpDGslcasGgkdg~~~LwdL  221 (315)
T KOG0279|consen  150 WVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQ-----LRTTFIGHSG---YVNTVTVSPDGSLCASGGKDGEAMLWDL  221 (315)
T ss_pred             cEEEEEEcCCCCCcEEEEccCCceEEEEccCCcc-----hhhccccccc---cEEEEEECCCCCEEecCCCCceEEEEEc
Confidence            9999999998  7899999999999999999844     4556666665   89999999999999995 8999999999


Q ss_pred             CCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceee
Q 001310          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP 1044 (1103)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1044 (1103)
                      +.++.+..  .+|...|.+++|+|+.-+|+.+ .+..|+|||++++..+..+....-.+ .           .-.+.+.|
T Consensus       222 ~~~k~lys--l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~-s-----------~~~~~~~c  286 (315)
T KOG0279|consen  222 NEGKNLYS--LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGP-S-----------SKAGDPIC  286 (315)
T ss_pred             cCCceeEe--ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcccccccc-c-----------cccCCcEE
Confidence            99999775  4578999999999998777765 46679999999999887666332211 1           12345778


Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310         1045 HAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1045 ~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                      ++++|+++ |+.|.+|..|+.|++|.+.
T Consensus       287 lslaws~d-G~tLf~g~td~~irv~qv~  313 (315)
T KOG0279|consen  287 LSLAWSAD-GQTLFAGYTDNVIRVWQVA  313 (315)
T ss_pred             EEEEEcCC-CcEEEeeecCCcEEEEEee
Confidence            99999998 9999999999999999984

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1.5e-36  Score=297.68  Aligned_cols=292  Identities=22%  Similarity=0.330  Sum_probs=268.0

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      +..+.|.+|...|+.+-|+|+-. ++++++.|++|++||..+|+....                   +.||...|..++|
T Consensus        99 ~l~~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~~-------------------LrGHt~sv~di~~  158 (406)
T KOG0295|consen   99 NLVQKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELERS-------------------LRGHTDSVFDISF  158 (406)
T ss_pred             CchhhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhhh-------------------hhccccceeEEEE
Confidence            55677889999999999999987 899999999999999999998765                   8899999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      +..|++||+++.|-.+.+||..+.  .+....+.+|...|.+++|-|.|.  ++++++.|.+|+.|++.+|.+++++.+|
T Consensus       159 ~a~Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h  234 (406)
T KOG0295|consen  159 DASGKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGH  234 (406)
T ss_pred             ecCccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCc
Confidence            999999999999999999999873  233446789999999999999998  8999999999999999999999999999


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC---------------CEEEEEec
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG---------------RRLFSCGT  549 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg---------------~~l~~~~~  549 (1103)
                      ...|..+..  ..||.++++++.|.++++|-+.++.+...+..|..+|.+++|.|..               .++.+++.
T Consensus       235 ~ewvr~v~v--~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr  312 (406)
T KOG0295|consen  235 SEWVRMVRV--NQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR  312 (406)
T ss_pred             hHhEEEEEe--cCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc
Confidence            999998887  6689999999999999999999999999999999999999997742               46666655


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                          |+.|++||+.++.++.++.+|.   +.|..++|+|.|++|+++.+|+++++||+.+++++..+..|.+  .++++.
T Consensus       313 ----DktIk~wdv~tg~cL~tL~ghd---nwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lD  383 (406)
T KOG0295|consen  313 ----DKTIKIWDVSTGMCLFTLVGHD---NWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLD  383 (406)
T ss_pred             ----cceEEEEeccCCeEEEEEeccc---ceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEe
Confidence                7789999999999999999999   9999999999999999999999999999999999999998765  489999


Q ss_pred             EecCCCEEEEEECCCeEEEEEc
Q 001310          630 FNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      |+.+..++++|+-|.++++|.-
T Consensus       384 fh~~~p~VvTGsVdqt~KvwEc  405 (406)
T KOG0295|consen  384 FHKTAPYVVTGSVDQTVKVWEC  405 (406)
T ss_pred             cCCCCceEEeccccceeeeeec
Confidence            9999999999999999999963

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=3.6e-32  Score=277.38  Aligned_cols=538  Identities=12%  Similarity=0.164  Sum_probs=386.0

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      -+-+.-++|+. -=..+-+-|.|..+...+   +.+.+++++...+.+                    +.||+..|.|++
T Consensus        56 LewvygYRG~d-cR~Nly~lptgE~vyfvA---~V~Vl~n~ee~~Qr~--------------------y~GH~ddikc~~  111 (626)
T KOG2106|consen   56 LEWVYGYRGVD-CRNNLYLLPTGELVYFVA---AVGVLYNWEERSQRH--------------------YLGHNDDIKCMA  111 (626)
T ss_pred             eEEEEeeccee-eeceeEEccCccEEEEec---cEEEEEeehhhhccc--------------------ccCCCCceEEEe
Confidence            34445566664 334556778887433333   456777876533322                    779999999999


Q ss_pred             ECCCCCEEEEEeCCC--------eEEEEEecCCCccccceEeccccccEEEEEEecCC--CceEEEEEcCCCceEEEeCC
Q 001310          404 WSPDGSLLGVAYSKH--------IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPC--KQISVITCGDDKTIKVWDAV  473 (1103)
Q Consensus       404 ~spdg~~las~~~d~--------~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~--~~~~l~s~~~d~~i~iwd~~  473 (1103)
                      .+||.-.+|+|-..|        .++|||..+-..+.   .+......|+|++|++-+  ..+..+--+.+..+.|||..
T Consensus       112 vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWq  188 (626)
T KOG2106|consen  112 VHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQ  188 (626)
T ss_pred             ecCCceeeccCcccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEecCCCccccchhhch
Confidence            999999999874444        49999977644333   566667789999999853  32233334566789999999


Q ss_pred             CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE---ecC-CCccEEEEEEccCCCEEEEEec
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD---YDA-PGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~---~~~-~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      .+......+.....|....|+|... .++++ ...|.+.+|+++.+.....   +.. ....|.|++|.++|..+-.   
T Consensus       189 k~~~~~~vk~sne~v~~a~FHPtd~-nliit-~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engdviTg---  263 (626)
T KOG2106|consen  189 KKAKLGPVKTSNEVVFLATFHPTDP-NLIIT-CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGDVITG---  263 (626)
T ss_pred             hhhccCcceeccceEEEEEeccCCC-cEEEE-eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCCEEee---
Confidence            9998888888888899999998743 44444 4568899999988765442   222 2257999999999987643   


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                        |.++.|.||+..+.+..+....|.   +.|.+++.-.+|. |++|+.|..|..|| ..-+.++....+.....+..++
T Consensus       264 --DS~G~i~Iw~~~~~~~~k~~~aH~---ggv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~elPe~~G~iRtv~  336 (626)
T KOG2106|consen  264 --DSGGNILIWSKGTNRISKQVHAHD---GGVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETELPEQFGPIRTVA  336 (626)
T ss_pred             --cCCceEEEEeCCCceEEeEeeecC---CceEEEEEecCcc-EeecCccceEEecc-ccccccccccCchhcCCeeEEe
Confidence              447789999998888777777666   9999999998885 56699999999999 5555566665555555566555


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001310          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1103)
                      -...+  |++|+..+.|..=.++++-.+                                                    
T Consensus       337 e~~~d--i~vGTtrN~iL~Gt~~~~f~~----------------------------------------------------  362 (626)
T KOG2106|consen  337 EGKGD--ILVGTTRNFILQGTLENGFTL----------------------------------------------------  362 (626)
T ss_pred             cCCCc--EEEeeccceEEEeeecCCceE----------------------------------------------------
Confidence            43322  677766665544333322111                                                    


Q ss_pred             cccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCC
Q 001310          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP  789 (1103)
Q Consensus       710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1103)
                                         ...+|......++..|+...+++++.|+.+++|+  ..+             ..|...   
T Consensus       363 -------------------~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k-------------~~wt~~---  405 (626)
T KOG2106|consen  363 -------------------TVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHK-------------LEWTKI---  405 (626)
T ss_pred             -------------------EEEecccceeeEEcCCChhheeeccCcceEEEcc--CCc-------------eeEEEE---
Confidence                               0123666777888899999999999999999998  211             123211   


Q ss_pred             ceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeE
Q 001310          790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI  868 (1103)
Q Consensus       790 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v  868 (1103)
                                 ...+..|+.|.|.| .+|.|. .|...+.|.++...+..-. ...++++++|+| +|.+||+|+.|+.|
T Consensus       406 -----------~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~-d~~~ls~v~ysp-~G~~lAvgs~d~~i  471 (626)
T KOG2106|consen  406 -----------IEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHT-DNEQLSVVRYSP-DGAFLAVGSHDNHI  471 (626)
T ss_pred             -----------ecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEe-cCCceEEEEEcC-CCCEEEEecCCCeE
Confidence                       45678899999999 888887 6999999999855554444 488999999999 99999999999999


Q ss_pred             EEEEcCCc-eeEEEec-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeee-e-----------eeecCCCccc
Q 001310          869 LIYNARSS-EVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC-R-----------SLQTPDGVMT  934 (1103)
Q Consensus       869 ~iwd~~~~-~~~~~l~-~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~-~-----------~~~~~~~~~~  934 (1103)
                      +||.+... ....... .|..+|+.+.||+|+++|.+-+.|-.|..|....-+.... +           -+....+  .
T Consensus       472 yiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~--s  549 (626)
T KOG2106|consen  472 YIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGG--S  549 (626)
T ss_pred             EEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecc--c
Confidence            99998764 3333332 2448999999999999999999999999994333221110 0           0011111  1


Q ss_pred             CCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCc--eEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          935 LAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL--TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       935 ~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                      ....+..++-|.+.+++|++ ..|+|++|...-.  +.....+.+|++-|++++|+.+...|++.+.|.+|..|++
T Consensus       550 ~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  550 DGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             CCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence            11245667778888899998 5689999987633  3333446789999999999999999998889999999986

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=2.4e-35  Score=287.76  Aligned_cols=298  Identities=18%  Similarity=0.256  Sum_probs=268.6

Q ss_pred             cCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      +..|-.+.+.+.+|.+.|.|+++.|-.+ ++++|+.|++++|||+.+|++..+                   +.||-..|
T Consensus       137 WHapwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lklt-------------------ltGhi~~v  196 (460)
T KOG0285|consen  137 WHAPWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKLT-------------------LTGHIETV  196 (460)
T ss_pred             ccCcceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEEe-------------------ecchhhee
Confidence            4556788899999999999999999987 799999999999999999998876                   88999999


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      ..+++|+--.||.+++.|+.|+.||++..+.++   .+.||-..|.|++..|.-.  .|++|+.|.+++|||+++...+.
T Consensus       197 r~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~  271 (460)
T KOG0285|consen  197 RGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVH  271 (460)
T ss_pred             eeeeecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEE
Confidence            999999999999999999999999999998777   6779999999999999888  89999999999999999999999


Q ss_pred             EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      .+.||..+|.++.+.+.  ...+++|+.|++|++||+..++....+..|...+.+++.+|....+++++.+     .|..
T Consensus       272 ~l~GH~~~V~~V~~~~~--dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-----nik~  344 (460)
T KOG0285|consen  272 VLSGHTNPVASVMCQPT--DPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-----NIKQ  344 (460)
T ss_pred             EecCCCCcceeEEeecC--CCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-----ccee
Confidence            99999999999988654  3579999999999999999999999999999999999999999999998753     3999


Q ss_pred             EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc---CCC---CCCCCceEEEecC
Q 001310          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---AGG---GLPENPRICFNKN  633 (1103)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~  633 (1103)
                      |++..|..+..+.+|.   ..+++++.+.|+ ++++|+++|.+.+||.++|-..+...   .++   ....|.+.+|...
T Consensus       345 w~~p~g~f~~nlsgh~---~iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDkt  420 (460)
T KOG0285|consen  345 WKLPEGEFLQNLSGHN---AIINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKT  420 (460)
T ss_pred             ccCCccchhhcccccc---ceeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeeccc
Confidence            9999999999988888   899999998775 78999999999999999886655442   221   2245788999999


Q ss_pred             CCEEEEEECCCeEEEEEcCC
Q 001310          634 GTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       634 g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      |..|+++..|.+|++|.-..
T Consensus       421 g~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  421 GSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             CceEEeccCCcceEEEeccc
Confidence            99999999999999997654

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=1.1e-34  Score=284.95  Aligned_cols=336  Identities=15%  Similarity=0.187  Sum_probs=290.6

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ...+.++..|++.|.+++.+|+.+ ++|+|+.|....||+..+|+....                   +.+|+..|+++.
T Consensus        54 DdS~~tF~~H~~svFavsl~P~~~-l~aTGGgDD~AflW~~~~ge~~~e-------------------ltgHKDSVt~~~  113 (399)
T KOG0296|consen   54 DDSLVTFDKHTDSVFAVSLHPNNN-LVATGGGDDLAFLWDISTGEFAGE-------------------LTGHKDSVTCCS  113 (399)
T ss_pred             ccceeehhhcCCceEEEEeCCCCc-eEEecCCCceEEEEEccCCcceeE-------------------ecCCCCceEEEE
Confidence            345688999999999999999776 899999999999999999997655                   889999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      ||.||.+||+|+-+|.|.||+..++....   .+..-...|.-+.|+|-+.  +|+.|+.||.+-+|.+.++...+.+.|
T Consensus       114 FshdgtlLATGdmsG~v~v~~~stg~~~~---~~~~e~~dieWl~WHp~a~--illAG~~DGsvWmw~ip~~~~~kv~~G  188 (399)
T KOG0296|consen  114 FSHDGTLLATGDMSGKVLVFKVSTGGEQW---KLDQEVEDIEWLKWHPRAH--ILLAGSTDGSVWMWQIPSQALCKVMSG  188 (399)
T ss_pred             EccCceEEEecCCCccEEEEEcccCceEE---EeecccCceEEEEeccccc--EEEeecCCCcEEEEECCCcceeeEecC
Confidence            99999999999999999999999986544   4555667899999999888  899999999999999999888899999


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-CccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      |..++++=.|.|  +|+.++++..||+|++|+..++.....+... .....++.++.++..++.|..    ++.+++-+.
T Consensus       189 h~~~ct~G~f~p--dGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~----e~~~~~~~~  262 (399)
T KOG0296|consen  189 HNSPCTCGEFIP--DGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS----EGVACGVNN  262 (399)
T ss_pred             CCCCcccccccC--CCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC----CccEEEEcc
Confidence            999999999955  6899999999999999999999988877643 446778899999999998865    556888888


Q ss_pred             CCCeeEEEEec--------ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310          563 SEGAIKRTYQG--------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1103)
Q Consensus       563 ~~~~~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g  634 (1103)
                      .+|+.+....+        +......|..+.++..-+..++|+-||+|.|||+...+........   ..|..+.|-+ .
T Consensus       263 ~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he---~~V~~l~w~~-t  338 (399)
T KOG0296|consen  263 GSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHE---DGVTKLKWLN-T  338 (399)
T ss_pred             ccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCC---CceEEEEEcC-c
Confidence            88888777663        2322344555666666778899999999999999987777766554   3489999998 7


Q ss_pred             CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccc
Q 001310          635 TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK  714 (1103)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~  714 (1103)
                      .+|++++.+|.|+.||..++++.....+|...|.+++++                      |+++++++++.|++.++++
T Consensus       339 ~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls----------------------~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  339 DYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALS----------------------PQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             chheeeccCceEEeeeccccceEEEEecCchheeEEEEc----------------------CCCcEEEEecCCCeEEEEe
Confidence            899999999999999999999999999999999999997                      7889999999999999887


Q ss_pred             cc
Q 001310          715 PL  716 (1103)
Q Consensus       715 ~~  716 (1103)
                      ..
T Consensus       397 v~  398 (399)
T KOG0296|consen  397 VP  398 (399)
T ss_pred             cC
Confidence            53

>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]

Probab=100.00  E-value=4.5e-34  Score=280.66  Aligned_cols=339  Identities=18%  Similarity=0.230  Sum_probs=287.5

Q ss_pred             EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEE
Q 001310          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  515 (1103)
Q Consensus       436 ~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  515 (1103)
                      .+..|+..|.+++.+|+.+  +++||+.|....+|++.+|..+..+.+|...|+++.|+  .+|.+|++|+.+|.|+||.
T Consensus        59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hdgtlLATGdmsG~v~v~~  134 (399)
T KOG0296|consen   59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HDGTLLATGDMSGKVLVFK  134 (399)
T ss_pred             ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEc--cCceEEEecCCCccEEEEE
Confidence            6789999999999999777  89999999999999999999999999999999999995  4789999999999999999


Q ss_pred             cCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE
Q 001310          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1103)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  595 (1103)
                      ..++.....+......+.-+.|+|.+..|++|+.    ++.+.+|.+.++...+.+.||.   .++++-.|.|+|+++++
T Consensus       135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~---~~ct~G~f~pdGKr~~t  207 (399)
T KOG0296|consen  135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHN---SPCTCGEFIPDGKRILT  207 (399)
T ss_pred             cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCC---CCcccccccCCCceEEE
Confidence            9999999988877888999999999999999876    6669999999988889999988   89999999999999999


Q ss_pred             EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecC
Q 001310          596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1103)
Q Consensus       596 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~  675 (1103)
                      +..||+|++|+..+++++..+....+ ....++.++..+..++.|..++.+.+-+..+++.+....+             
T Consensus       208 gy~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~-------------  273 (399)
T KOG0296|consen  208 GYDDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNG-------------  273 (399)
T ss_pred             EecCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccceEEEecCC-------------
Confidence            99999999999999999999876554 4568899999999999999999888877665543322110             


Q ss_pred             CceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC
Q 001310          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1103)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  755 (1103)
                                                                                           .+..+-.... 
T Consensus       274 ---------------------------------------------------------------------~~~~l~~~~e-  283 (399)
T KOG0296|consen  274 ---------------------------------------------------------------------TVPELKPSQE-  283 (399)
T ss_pred             ---------------------------------------------------------------------CCccccccch-
Confidence                                                                                 0000000000 


Q ss_pred             ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCce
Q 001310          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK  834 (1103)
Q Consensus       756 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~  834 (1103)
                                                                  .....|..+.++..-.+.|+|+ ||+|.|||+.+.+
T Consensus       284 --------------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~  319 (399)
T KOG0296|consen  284 --------------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAAST  319 (399)
T ss_pred             --------------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccch
Confidence                                                        0223344445555666777887 8999999998776


Q ss_pred             eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310          835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1103)
Q Consensus       835 ~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd  914 (1103)
                      ....+. |...|+.+.|-+  ..+|++++.+|.|+.||.++|+++..+.||...|.+++++|++++++|+|.|++.+|++
T Consensus       320 ~R~~c~-he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~  396 (399)
T KOG0296|consen  320 LRHICE-HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFE  396 (399)
T ss_pred             hheecc-CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEe
Confidence            655554 888899999986  46899999999999999999999999999999999999999999999999999999998


Q ss_pred             cC
Q 001310          915 VD  916 (1103)
Q Consensus       915 ~~  916 (1103)
                      +.
T Consensus       397 v~  398 (399)
T KOG0296|consen  397 VP  398 (399)
T ss_pred             cC
Confidence            75

>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]

Probab=100.00  E-value=8.7e-34  Score=263.61  Aligned_cols=295  Identities=17%  Similarity=0.259  Sum_probs=252.2

Q ss_pred             cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eEEEEeccccc
Q 001310          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQ  577 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~  577 (1103)
                      -+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++     ...|++||++++.  ++..+.+|.  
T Consensus        11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~--   83 (311)
T KOG0315|consen   11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHT--   83 (311)
T ss_pred             eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccC--
Confidence            5799999999999999999999999999999999999999999999987     4569999999875  588899988  


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       578 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                       ..|.++.|..+|+++++||+||+++|||++...+.+.+...   .+|+++..+|+...|+++..+|.|++||+.+....
T Consensus        84 -kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~---spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~  159 (311)
T KOG0315|consen   84 -KNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN---SPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCT  159 (311)
T ss_pred             -CceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC---CCcceEEecCCcceEEeecCCCcEEEEEccCCccc
Confidence             89999999999999999999999999999997666666543   67999999999999999999999999999876333


Q ss_pred             EeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccE
Q 001310          658 DAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI  737 (1103)
Q Consensus       658 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i  737 (1103)
                      ..+-                                                                   |  .....|
T Consensus       160 ~~li-------------------------------------------------------------------P--e~~~~i  170 (311)
T KOG0315|consen  160 HELI-------------------------------------------------------------------P--EDDTSI  170 (311)
T ss_pred             cccC-------------------------------------------------------------------C--CCCcce
Confidence            2221                                                                   1  123568


Q ss_pred             EEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEE
Q 001310          738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYL  817 (1103)
Q Consensus       738 ~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l  817 (1103)
                      .++++.|||..++++...|..++|++......           ..+.       ...++  ..|...+....+|||+++|
T Consensus       171 ~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~-----------s~l~-------P~~k~--~ah~~~il~C~lSPd~k~l  230 (311)
T KOG0315|consen  171 QSLTVMPDGSMLAAANNKGNCYVWRLLNHQTA-----------SELE-------PVHKF--QAHNGHILRCLLSPDVKYL  230 (311)
T ss_pred             eeEEEcCCCcEEEEecCCccEEEEEccCCCcc-----------ccce-------Ehhhe--ecccceEEEEEECCCCcEE
Confidence            89999999999999999999999998663210           0000       11111  2589999999999999999


Q ss_pred             EEEc-CCeEEEEEcCCc-eeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEc
Q 001310          818 FSAS-GGVISLYIVMTF-KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS  895 (1103)
Q Consensus       818 ~~~~-dg~i~iwd~~~~-~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  895 (1103)
                      |+++ |.+++||+.++. +.-..+.+|...+...+||. |++||++|+.|+.+++|++..++.+....+|.....|++..
T Consensus       231 at~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln  309 (311)
T KOG0315|consen  231 ATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN  309 (311)
T ss_pred             EeecCCceEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence            9997 899999999987 66677889999999999999 99999999999999999999999999999998888887764

>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]

Probab=100.00  E-value=1.3e-31  Score=273.27  Aligned_cols=524  Identities=13%  Similarity=0.168  Sum_probs=376.0

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--------ceEEEeC
Q 001310          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------TIKVWDA  472 (1103)
Q Consensus       401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--------~i~iwd~  472 (1103)
                      .+-+-|.|..+...  .+.+.+++++...    +..+.+|...|.|++.+||--  .+++|-.-|        .+++||.
T Consensus        70 Nly~lptgE~vyfv--A~V~Vl~n~ee~~----Qr~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds  141 (626)
T KOG2106|consen   70 NLYLLPTGELVYFV--AAVGVLYNWEERS----QRHYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS  141 (626)
T ss_pred             eeEEccCccEEEEe--ccEEEEEeehhhh----cccccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence            35677888776554  3346677776532    124679999999999999865  566554333        5999999


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEE--ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      .+-..++.+......|.+++|++.+.|.++...  +.+..+.+||+..+............+....|.|.+..++.... 
T Consensus       142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G-  220 (626)
T KOG2106|consen  142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG-  220 (626)
T ss_pred             ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence            888888888888889999999998888777765  34566899999988877777777778889999996655544432 


Q ss_pred             CCCceeEEEEeCCCCeeEEE---EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          551 KEGESFLVEWNESEGAIKRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                         .+.++.|+.+.+...+.   +..++  +..|.+++|.++|. +++|..+|.|.||+..+.+..+....|  ...|.+
T Consensus       221 ---k~H~~Fw~~~~~~l~k~~~~fek~e--kk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~  292 (626)
T KOG2106|consen  221 ---KGHLYFWTLRGGSLVKRQGIFEKRE--KKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAH--DGGVFS  292 (626)
T ss_pred             ---CceEEEEEccCCceEEEeecccccc--ceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeec--CCceEE
Confidence               67799999998876554   44444  46799999999875 789999999999999888777766655  446899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      ++.-.+|.+|- |+.|..|..|| ..-+.++..+.                                             
T Consensus       293 L~~lr~GtllS-GgKDRki~~Wd-~~y~k~r~~el---------------------------------------------  325 (626)
T KOG2106|consen  293 LCMLRDGTLLS-GGKDRKIILWD-DNYRKLRETEL---------------------------------------------  325 (626)
T ss_pred             EEEecCccEee-cCccceEEecc-ccccccccccC---------------------------------------------
Confidence            99999997666 99999999999 22222221111                                             


Q ss_pred             cccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCC
Q 001310          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1103)
Q Consensus       708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1103)
                                           |.  ..+.|+.++-..  .-++.+...+.|..=.++                      .
T Consensus       326 ---------------------Pe--~~G~iRtv~e~~--~di~vGTtrN~iL~Gt~~----------------------~  358 (626)
T KOG2106|consen  326 ---------------------PE--QFGPIRTVAEGK--GDILVGTTRNFILQGTLE----------------------N  358 (626)
T ss_pred             ---------------------ch--hcCCeeEEecCC--CcEEEeeccceEEEeeec----------------------C
Confidence                                 00  122333332211  114444444333321111                      1


Q ss_pred             CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001310          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS  866 (1103)
Q Consensus       788 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1103)
                      +..+.     ..+|......++..|+...+++++ |+.+++|+  ..+...+.. ...++.|+.|+| .| .+|.|+..|
T Consensus       359 ~f~~~-----v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G  428 (626)
T KOG2106|consen  359 GFTLT-----VQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATG  428 (626)
T ss_pred             CceEE-----EEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccc
Confidence            11111     125778888999999998888887 89999999  444444433 456889999999 77 999999999


Q ss_pred             eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC
Q 001310          867 TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1103)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~  946 (1103)
                      ...+.|.++...+..-.. ..++++++|+|+|.+||.|+.|+.|+||.++.+...-. .+....+     .+|+.+.||+
T Consensus       429 ~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~-r~~k~~g-----s~ithLDwS~  501 (626)
T KOG2106|consen  429 RWFVLDTETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYS-RVGKCSG-----SPITHLDWSS  501 (626)
T ss_pred             eEEEEecccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEE-EeeeecC-----ceeEEeeecC
Confidence            999999999666555444 88999999999999999999999999999987553322 2222222     3799999999


Q ss_pred             CCCEEEE-EeCCeEEEEECCCceEEE-----------------EeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          947 DQTRFLL-VHETHLAIYEAEELTCLK-----------------QWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       947 dg~~l~~-~~d~~v~iwd~~~~~~~~-----------------~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      |+++|.+ +.|-.|..|.......+.                 .+...|+..|..++-|.+.+++|+|.+.|.|++|...
T Consensus       502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP  581 (626)
T KOG2106|consen  502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP  581 (626)
T ss_pred             CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence            9999999 678889999443221111                 1123457777788888899999999999999999886


Q ss_pred             CceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1009 NLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1009 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      --...+.+-                .-.+|++.|.++  +|.-. ...+++.+.|.+|..|++
T Consensus       582 c~s~rA~~h----------------e~~ghs~~vt~V--~Fl~~-d~~li~tg~D~Si~qW~l  625 (626)
T KOG2106|consen  582 CSSPRAPSH----------------EYGGHSSHVTNV--AFLCK-DSHLISTGKDTSIMQWRL  625 (626)
T ss_pred             cCCCcccce----------------eeccccceeEEE--EEeeC-CceEEecCCCceEEEEEe
Confidence            554443332                112688888754  45444 456666669999999987

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=2.3e-33  Score=264.53  Aligned_cols=292  Identities=22%  Similarity=0.339  Sum_probs=240.2

Q ss_pred             eeEecccCCcCceEEEecCC-CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          326 VAQTLIEGSSSPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spd-g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ..+++++|++.|+.++|+|- |. +||+|+.|..|+||+...+.-...               +..+-.+|+..|+++||
T Consensus         6 ~~~~~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAw   69 (312)
T KOG0645|consen    6 LEQKLSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAW   69 (312)
T ss_pred             eEEeecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeee
Confidence            45789999999999999998 86 899999999999999985432211               12234579999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC---ceeEEe
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSF  481 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~  481 (1103)
                      +|.|++||+++.|.++.||.-..++ +.....+.||...|.|++|+++|.  +||+++.|+.|-||.+..+   +++..+
T Consensus        70 sp~g~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL  146 (312)
T KOG0645|consen   70 SPHGRYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVL  146 (312)
T ss_pred             cCCCcEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeee
Confidence            9999999999999999999887654 555668999999999999999999  8999999999999998754   467888


Q ss_pred             ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC---CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      +.|...|..+.|||+.+  +|++++.|++|++|+-...   .+..++.++...+.+++|++.|..|++++.    ++++.
T Consensus       147 ~~HtqDVK~V~WHPt~d--lL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~  220 (312)
T KOG0645|consen  147 QEHTQDVKHVIWHPTED--LLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVS  220 (312)
T ss_pred             ccccccccEEEEcCCcc--eeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceE
Confidence            99999999999998764  9999999999999987632   357788899999999999999999999975    66799


Q ss_pred             EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe------eEEEEcCCCCCCCCceEEEec
Q 001310          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ------LLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      ||-..+     .+.+.  |...+..+.|.  ...|++++.|+.|++|.-...-      .+.. ..+.+...|+++.|+|
T Consensus       221 Iw~~~~-----~~~~~--~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p  290 (312)
T KOG0645|consen  221 IWRLYT-----DLSGM--HSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNP  290 (312)
T ss_pred             eeeecc-----Ccchh--cccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcC
Confidence            997542     22221  24788999998  4579999999999999765421      1111 1122344799999999


Q ss_pred             C-CCEEEEEECCCeEEEEEcC
Q 001310          633 N-GTLLAVIANENRIKILETP  652 (1103)
Q Consensus       633 ~-g~~l~~~~~dg~i~iw~~~  652 (1103)
                      . .++|+++++||.+++|.+.
T Consensus       291 ~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  291 KVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             CCCCceeecCCCceEEEEEec
Confidence            4 7899999999999999864

>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]

Probab=100.00  E-value=1.7e-33  Score=285.26  Aligned_cols=280  Identities=20%  Similarity=0.318  Sum_probs=253.0

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      ...|++++|+.+|. +||+|+.||.++||+.. |.++.+                   +..|+++|.++.|+.+|.||++
T Consensus       235 nkdVT~L~Wn~~G~-~LatG~~~G~~riw~~~-G~l~~t-------------------l~~HkgPI~slKWnk~G~yilS  293 (524)
T KOG0273|consen  235 NKDVTSLDWNNDGT-LLATGSEDGEARIWNKD-GNLIST-------------------LGQHKGPIFSLKWNKKGTYILS  293 (524)
T ss_pred             cCCcceEEecCCCC-eEEEeecCcEEEEEecC-chhhhh-------------------hhccCCceEEEEEcCCCCEEEe
Confidence            35899999999998 89999999999999965 555544                   7779999999999999999999


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  493 (1103)
                      ++.|+++.+||..+|+..+   .+.-|..+-..+.|-.+..   +++++.|+.|+|+-+....++.++.+|.++|.++.|
T Consensus       294 ~~vD~ttilwd~~~g~~~q---~f~~~s~~~lDVdW~~~~~---F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~  367 (524)
T KOG0273|consen  294 GGVDGTTILWDAHTGTVKQ---QFEFHSAPALDVDWQSNDE---FATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKW  367 (524)
T ss_pred             ccCCccEEEEeccCceEEE---eeeeccCCccceEEecCce---EeecCCCceEEEEEecCCCcceeeecccCceEEEEE
Confidence            9999999999999987655   4566888777889987775   999999999999999999999999999999999999


Q ss_pred             eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC---------EEEEEecCCCCceeEEEEeCCC
Q 001310          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR---------RLFSCGTSKEGESFLVEWNESE  564 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~---------~l~~~~~~~~~~~~i~iwd~~~  564 (1103)
                      .|  .+.+|++++.|+++++|..........+..|...|..+.|+|.|.         .+++++.    +++|++||+..
T Consensus       368 n~--tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~----dstV~lwdv~~  441 (524)
T KOG0273|consen  368 NP--TGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF----DSTVKLWDVES  441 (524)
T ss_pred             CC--CCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec----CCeEEEEEccC
Confidence            65  568999999999999999999889999999999999999999653         5677765    77899999999


Q ss_pred             CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1103)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg  644 (1103)
                      +.++..|..|.   .+|.+++|+|++.++++|+.||.|.+|+..+++..+.....+.   |..++|+.+|..+..+..|+
T Consensus       442 gv~i~~f~kH~---~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~---Ifel~Wn~~G~kl~~~~sd~  515 (524)
T KOG0273|consen  442 GVPIHTLMKHQ---EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG---IFELCWNAAGDKLGACASDG  515 (524)
T ss_pred             CceeEeeccCC---CceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe---EEEEEEcCCCCEEEEEecCC
Confidence            99999999988   9999999999999999999999999999999999999976543   89999999999999999999


Q ss_pred             eEEEEEcC
Q 001310          645 RIKILETP  652 (1103)
Q Consensus       645 ~i~iw~~~  652 (1103)
                      .+.+.|+.
T Consensus       516 ~vcvldlr  523 (524)
T KOG0273|consen  516 SVCVLDLR  523 (524)
T ss_pred             CceEEEec
Confidence            99998864

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.6e-32  Score=291.55  Aligned_cols=498  Identities=16%  Similarity=0.205  Sum_probs=355.0

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +...+.+|..++|+|..-+++++-..|.|++||..-+.++.   .+..|.++|..++|+|.+.  +++|||+|..|+||+
T Consensus         5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn   79 (1202)
T KOG0292|consen    5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN   79 (1202)
T ss_pred             hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence            34467889999999999999999999999999999988776   6889999999999999998  999999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      ..+.+|+.++.||-+.|+.+.||+.  -.+|+++|.|.+|+||++.+.+++..+.+|.+-|.|..|+|....+++++-  
T Consensus        80 Yk~rrclftL~GHlDYVRt~~FHhe--yPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL--  155 (1202)
T KOG0292|consen   80 YKTRRCLFTLLGHLDYVRTVFFHHE--YPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL--  155 (1202)
T ss_pred             cccceehhhhccccceeEEeeccCC--CceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence            9999999999999999999999864  479999999999999999999999999999999999999999999999987  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE---EEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI---LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l---~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1103)
                        |.+|++||+..-+....-.+.-  ...+       .+...   +.|+.|-.          ....+.+|  ...|+-+
T Consensus       156 --DQTVRVWDisGLRkk~~~pg~~--e~~~-------~~~~~~~dLfg~~DaV----------VK~VLEGH--DRGVNwa  212 (1202)
T KOG0292|consen  156 --DQTVRVWDISGLRKKNKAPGSL--EDQM-------RGQQGNSDLFGQTDAV----------VKHVLEGH--DRGVNWA  212 (1202)
T ss_pred             --cceEEEEeecchhccCCCCCCc--hhhh-------hccccchhhcCCcCee----------eeeeeccc--ccccceE
Confidence              6679999986533222111100  0011       11111   12222222          22344544  4569999


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCC--eeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001310          629 CFNKNGTLLAVIANENRIKILETPESN--SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1103)
Q Consensus       629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1103)
                      +|+|.-.++++|++|..|++|.+...+  .+.+.++|.+.|.++-|.                      |..+++++.+.
T Consensus       213 AfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh----------------------p~q~lIlSnsE  270 (1202)
T KOG0292|consen  213 AFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH----------------------PHQDLILSNSE  270 (1202)
T ss_pred             EecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEec----------------------CccceeEecCC
Confidence            999999999999999999999998664  456789999999999997                      66788999999


Q ss_pred             ccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCC
Q 001310          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPR  786 (1103)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~  786 (1103)
                      |+++|+||+......+++.-      ..++...++..|..+.++++...| +.+|.+..                     
T Consensus       271 DksirVwDm~kRt~v~tfrr------endRFW~laahP~lNLfAAgHDsG-m~VFkleR---------------------  322 (1202)
T KOG0292|consen  271 DKSIRVWDMTKRTSVQTFRR------ENDRFWILAAHPELNLFAAGHDSG-MIVFKLER---------------------  322 (1202)
T ss_pred             CccEEEEecccccceeeeec------cCCeEEEEEecCCcceeeeecCCc-eEEEEEcc---------------------
Confidence            99999999987665555432      457788899999999666555554 45555432                     


Q ss_pred             CCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee--eEEecCC---CCCeeEEEEcCCCCCEEEE
Q 001310          787 HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT--ILTIMPP---SPTATSLAFNPHDNNVIAI  861 (1103)
Q Consensus       787 ~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~--~~~~~~~---~~~i~~l~~s~~d~~~las  861 (1103)
                                     ..+.  .++  ++..|....+..|+-+|+.+.+.  +..++..   ..+..++.++|..+..|++
T Consensus       323 ---------------Erpa--~~v--~~n~LfYvkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlic  383 (1202)
T KOG0292|consen  323 ---------------ERPA--YAV--NGNGLFYVKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLIC  383 (1202)
T ss_pred             ---------------cCce--EEE--cCCEEEEEccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEE
Confidence                           1222  222  34455555688999999987543  3334433   3678999999955555554


Q ss_pred             EeC-CCeEEEEEcCCceeE----EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310          862 GMD-DSTILIYNARSSEVI----SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1103)
Q Consensus       862 g~~-dg~v~iwd~~~~~~~----~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1103)
                      ... .|.-.++.+......    .... ......++ |-...++.+---.+..+.+-++.+....+   +..+.      
T Consensus       384 s~~~n~~y~L~~ipk~~~~~~~~~~~~-k~tG~~a~-fvarNrfavl~k~~~~v~ik~l~N~vtkk---l~~~~------  452 (1202)
T KOG0292|consen  384 SNLDNGEYELVQIPKDSDGVSDGKDVK-KGTGEGAL-FVARNRFAVLDKSNEQVVIKNLKNKVTKK---LLLPE------  452 (1202)
T ss_pred             eccCCCeEEEEEecCcccccCCchhhh-cCCCCceE-EEEecceEEEEecCcceEEecccchhhhc---ccCcc------
Confidence            443 345555555432110    0000 11122222 22222333322335566666666533111   22221      


Q ss_pred             CCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          937 PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       937 ~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                       ....+-+..+|.+|+. +...|.+||+.....+.++.   -..|..+.||+|..+++--+ ..+|.|.+-
T Consensus       453 -~~~~IF~ag~g~lll~-~~~~v~lfdvQq~~~~~si~---~s~vkyvvws~dm~~vAll~-Kh~i~i~~k  517 (1202)
T KOG0292|consen  453 -STDDIFYAGTGNLLLR-SPDSVTLFDVQQKKKVGSIK---VSKVKYVVWSNDMSRVALLS-KHTITIADK  517 (1202)
T ss_pred             -cccceeeccCccEEEE-cCCeEEEEEeecceEEEEEe---cCceeEEEEcCccchhhhcc-cceEEEEec
Confidence             2445666666766554 45679999999888887754   45788899999998877554 356777664

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=1.5e-33  Score=269.86  Aligned_cols=291  Identities=18%  Similarity=0.236  Sum_probs=251.9

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      ..|.+|+++|..+.|+|+|. ++|+|+.|..|.+|++.....-.                  ..+++|++.|..+.|.+|
T Consensus        41 m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdceN~------------------~~lkgHsgAVM~l~~~~d  101 (338)
T KOG0265|consen   41 MLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCENF------------------WVLKGHSGAVMELHGMRD  101 (338)
T ss_pred             hhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEeccccccce------------------eeeccccceeEeeeeccC
Confidence            45789999999999999998 79999999999999975432211                  127799999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      +..|++++.|.+|+.||+++|++.+   .+++|..-|+++.-+.-|.+ ++.|++.|+++++||+++..+++++. ....
T Consensus       102 ~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyq  176 (338)
T KOG0265|consen  102 GSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQ  176 (338)
T ss_pred             CCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-ccee
Confidence            9999999999999999999998776   67899999999985555665 78999999999999999999888875 4567


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---  564 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~---  564 (1103)
                      ++++.|.  ..+..+++|+-|+.|++||++.......+.+|..+|+.+..+++|.++.+-+.    +..+++||++.   
T Consensus       177 ltAv~f~--d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~~p  250 (338)
T KOG0265|consen  177 LTAVGFK--DTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPFAP  250 (338)
T ss_pred             EEEEEec--ccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEecccCC
Confidence            8888884  45678999999999999999999999999999999999999999999998876    77899999874   


Q ss_pred             -CeeEEEEecccc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          565 -GAIKRTYQGLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       565 -~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                       .+++..+.++.. .......++|+|+++.+-+|+.|..+++||......+..+++|.  ..|+++.|+|...++.+++.
T Consensus       251 ~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~~s  328 (338)
T KOG0265|consen  251 SQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSCSS  328 (338)
T ss_pred             CCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEecc
Confidence             345788887651 12345678999999999999999999999999989999998774  46999999999999999999


Q ss_pred             CCeEEEEE
Q 001310          643 ENRIKILE  650 (1103)
Q Consensus       643 dg~i~iw~  650 (1103)
                      |.+|.+=+
T Consensus       329 dk~i~lge  336 (338)
T KOG0265|consen  329 DKTIYLGE  336 (338)
T ss_pred             CceeEeec
Confidence            99988743

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=1e-33  Score=260.79  Aligned_cols=292  Identities=15%  Similarity=0.224  Sum_probs=254.1

Q ss_pred             CCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1103)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  400 (1103)
                      .+|...+++|..|.++|.++.|+-||+ +..+++.|.+|++||...|.++++                   +.+|...|.
T Consensus         4 e~ptkr~~~l~~~qgaV~avryN~dGn-Y~ltcGsdrtvrLWNp~rg~likt-------------------YsghG~EVl   63 (307)
T KOG0316|consen    4 ELPTKRLSILDCAQGAVRAVRYNVDGN-YCLTCGSDRTVRLWNPLRGALIKT-------------------YSGHGHEVL   63 (307)
T ss_pred             cCcchhceeecccccceEEEEEccCCC-EEEEcCCCceEEeecccccceeee-------------------ecCCCceee
Confidence            457778899999999999999999999 577788899999999999999987                   789999999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC--cee
Q 001310          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG--SRT  478 (1103)
Q Consensus       401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~--~~~  478 (1103)
                      .++.+.|...+++|+.|..+.+||+++|+..+   .+.+|.+.|+.++|+.+..  .+++|+.|.++++||.++.  +++
T Consensus        64 D~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePi  138 (307)
T KOG0316|consen   64 DAALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPI  138 (307)
T ss_pred             eccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCcc
Confidence            99999999999999999999999999998777   7899999999999999998  9999999999999998754  678


Q ss_pred             EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      +.+......|.++.+    .+..|++|+.||+++.||++.++....+  .+.+|++++|++|++..++++.    +..++
T Consensus       139 Qildea~D~V~Si~v----~~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlr  208 (307)
T KOG0316|consen  139 QILDEAKDGVSSIDV----AEHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLR  208 (307)
T ss_pred             chhhhhcCceeEEEe----cccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceee
Confidence            888888899999987    4468999999999999999887665444  4568999999999999998876    66799


Q ss_pred             EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~  638 (1103)
                      +.|-.+|++++.+++|......+ .++++....++++|++||.|++||+.....+..+..+.. ..+..++++|.-..++
T Consensus       209 LlDk~tGklL~sYkGhkn~eykl-dc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~  286 (307)
T KOG0316|consen  209 LLDKETGKLLKSYKGHKNMEYKL-DCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFI  286 (307)
T ss_pred             ecccchhHHHHHhcccccceeee-eeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCcccee
Confidence            99999999999999998333333 445677778999999999999999999999998887654 4578999999887777


Q ss_pred             EEECCCeEEEEE
Q 001310          639 VIANENRIKILE  650 (1103)
Q Consensus       639 ~~~~dg~i~iw~  650 (1103)
                      ++...+ +..|.
T Consensus       287 ~A~~~~-~~~~~  297 (307)
T KOG0316|consen  287 TATGHG-DLFWY  297 (307)
T ss_pred             EecCCc-eecee
Confidence            777644 55554

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=6.8e-30  Score=271.22  Aligned_cols=502  Identities=12%  Similarity=0.130  Sum_probs=368.5

Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccc-cccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      ...|+++|||.+.+.||.+-.+|.|.||++..+-...  ..+.++ ...|.+++|++.++   |.+.+.+|.|.-||+.+
T Consensus        25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~--~vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~~   99 (691)
T KOG2048|consen   25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLE--PVIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLHT   99 (691)
T ss_pred             ccceEEEEEeccCCceeeeccCCcEEEEccCCCceee--EEEecCCCCceeeEEEccCCe---EEeecCCceEEEEeccc
Confidence            4689999999999999999999999999999864333  245555 45799999997665   99999999999999999


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE--EecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      ++.++.+....+.|++++.++..  ..++.|+.||.+..++...+....  .+....+.+.+++|+|++..++.|+.   
T Consensus       100 lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~---  174 (691)
T KOG2048|consen  100 LKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI---  174 (691)
T ss_pred             CceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc---
Confidence            99999999999999999997754  689999999977777776666554  33445578999999999999999976   


Q ss_pred             CceeEEEEeCCCCeeEEEEe----cccc-cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          553 GESFLVEWNESEGAIKRTYQ----GLQL-QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~----~~~~-~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                       ++.|++||..++..+....    +... ...-|.++.|-.+ ..+++|...|+|.+||...+.+++.+..+.  ..|.+
T Consensus       175 -Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~--adVl~  250 (691)
T KOG2048|consen  175 -DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHD--ADVLA  250 (691)
T ss_pred             -CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhh--cceeE
Confidence             7789999999998776222    1110 1235778877755 579999999999999999999999988774  46999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      ++..+++.++++++.|+.|..+...++..-                                                  
T Consensus       251 Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~--------------------------------------------------  280 (691)
T KOG2048|consen  251 LAVADNEDRVFSAGVDPKIIQYSLTTNKSE--------------------------------------------------  280 (691)
T ss_pred             EEEcCCCCeEEEccCCCceEEEEecCCccc--------------------------------------------------
Confidence            999999999999999999988877654220                                                  


Q ss_pred             cccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCC
Q 001310          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1103)
Q Consensus       708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1103)
                           |-..           .....|...|++++..++  .+++++.|..+.+-.....+              ..+-  
T Consensus       281 -----wv~~-----------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~--------------~~~h--  326 (691)
T KOG2048|consen  281 -----WVIN-----------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFK--------------NMDH--  326 (691)
T ss_pred             -----eeee-----------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccC--------------chhh--
Confidence                 1000           011237777888888877  68888888877763322100              0000  


Q ss_pred             CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee---------eEEecCCCCCeeEEEEcCCCCCE
Q 001310          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---------ILTIMPPSPTATSLAFNPHDNNV  858 (1103)
Q Consensus       788 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~---------~~~~~~~~~~i~~l~~s~~d~~~  858 (1103)
                         .+....    ...  .-+...|..++++.-.+..+.+|.+.+...         .+-.......|.+.+.|| +|++
T Consensus       327 ---~~~~~~----p~~--~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~  396 (691)
T KOG2048|consen  327 ---RQKNLF----PAS--DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNL  396 (691)
T ss_pred             ---hccccc----ccc--ceeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCE
Confidence               000000    011  123445666666666788888998865521         122233556899999999 9999


Q ss_pred             EEEEeCCCeEEEEEcCCceeEEE-----eccCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCceeeeeeeecCCCc
Q 001310          859 IAIGMDDSTILIYNARSSEVISK-----LEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1103)
Q Consensus       859 lasg~~dg~v~iwd~~~~~~~~~-----l~~h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~  932 (1103)
                      ++.+. -..++||.+.....+..     .....-.+..+.|+-|+..++.++ .+..+.+.++++........++.. ..
T Consensus       397 Ia~st-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~  474 (691)
T KOG2048|consen  397 IAIST-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AK  474 (691)
T ss_pred             EEEee-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cC
Confidence            99876 34688888875322221     222334577889999998888888 677888888887554332222222 11


Q ss_pred             ccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCc
Q 001310          933 MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       933 ~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                         ...|..++.||||++||+ +..+.|.+|++++++.-.... .-...|+.++|+| +-..|+.+..|+.|.-||++..
T Consensus       475 ---~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~-rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~  550 (691)
T KOG2048|consen  475 ---CPSISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKV-RLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEAR  550 (691)
T ss_pred             ---CCcceeEEEcCCCCEEEEEeccceEEEEEcccceeecchh-ccCcceeeeeccccccCcEEEEecCCeEEEEecchh
Confidence               147999999999999999 589999999999887655422 2358999999995 5567888999999999999654


Q ss_pred             e
Q 001310         1011 E 1011 (1103)
Q Consensus      1011 ~ 1011 (1103)
                      +
T Consensus       551 ~  551 (691)
T KOG2048|consen  551 N  551 (691)
T ss_pred             h
Confidence            4

>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]

Probab=100.00  E-value=7.6e-33  Score=264.99  Aligned_cols=287  Identities=18%  Similarity=0.297  Sum_probs=249.9

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      .+.+|++.|..+.|+|+|.+||+|+.|..|.+|++....  .....+++|.+.|..+.|.+|+.  .+++++.|++|+.|
T Consensus        42 ~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   42 LLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRGW  117 (338)
T ss_pred             hcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEEE
Confidence            378999999999999999999999999999999976543  34447889999999999999999  89999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      |+++|++++.+++|...|+++... ..+-.++.+++.||++++||++......++.. ..+++++.|..++..+++++- 
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~-rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~-kyqltAv~f~d~s~qv~sggI-  194 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPS-RRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN-KYQLTAVGFKDTSDQVISGGI-  194 (338)
T ss_pred             ecccceeeehhccccceeeecCcc-ccCCeEEEecCCCceEEEEeecccchhhcccc-ceeEEEEEecccccceeeccc-
Confidence            999999999999999999999843 23446788999999999999998777665542 347899999999999999987 


Q ss_pred             CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCCCCC--C
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLP--E  624 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~--~  624 (1103)
                         ++.|.+||++.+.....+.||.   +.|+.+..+++|.++++-+.|.++++||++..    .++..+.++.+..  .
T Consensus       195 ---dn~ikvWd~r~~d~~~~lsGh~---DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfekn  268 (338)
T KOG0265|consen  195 ---DNDIKVWDLRKNDGLYTLSGHA---DTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKN  268 (338)
T ss_pred             ---cCceeeeccccCcceEEeeccc---CceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhh
Confidence               4459999999999999999999   99999999999999999999999999998753    4467776654432  2


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceee
Q 001310          625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  704 (1103)
Q Consensus       625 v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  704 (1103)
                      ...++|+|+++.+..|+.|..+++||......+..+.+|...|.+++|.|                      ....+.++
T Consensus       269 lL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~gsvn~~~Fhp----------------------~e~iils~  326 (338)
T KOG0265|consen  269 LLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHYGSVNEVDFHP----------------------TEPIILSC  326 (338)
T ss_pred             cceeeccCCCCccccccccceEEEeecccccEEEEcCCcceeEEEeeecC----------------------CCcEEEEe
Confidence            45789999999999999999999999999999999999999999999984                      55566777


Q ss_pred             cccccccc
Q 001310          705 EAENKSEV  712 (1103)
Q Consensus       705 ~~d~~i~~  712 (1103)
                      +.|++|.+
T Consensus       327 ~sdk~i~l  334 (338)
T KOG0265|consen  327 SSDKTIYL  334 (338)
T ss_pred             ccCceeEe
Confidence            77777655

>KOG0295 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2e-33  Score=275.79  Aligned_cols=285  Identities=20%  Similarity=0.287  Sum_probs=263.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|..+|+.+-|+|+-...++++.|++|++||..+|+..+   .++||...|..++|+..|+  ++++++.|-.+++||
T Consensus       104 l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LWd  178 (406)
T KOG0295|consen  104 LAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLWD  178 (406)
T ss_pred             hhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhee
Confidence            77899999999999999999999999999999999998755   7899999999999999999  899999999999999


Q ss_pred             CCC-CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          472 AVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       472 ~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      .++ -++++.+.+|...|.+++|.|.+  .+|++++.|.+|+.|+++++-+..++.+|...+..+..+.||..+++++. 
T Consensus       179 ~~~~~~c~ks~~gh~h~vS~V~f~P~g--d~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~-  255 (406)
T KOG0295|consen  179 FDTFFRCIKSLIGHEHGVSSVFFLPLG--DHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN-  255 (406)
T ss_pred             HHHHHHHHHHhcCcccceeeEEEEecC--CeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC-
Confidence            887 67888999999999999998764  69999999999999999999999999999999999999999999999976 


Q ss_pred             CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC---------------CCEEEEEeCCCcEEEEECCCCeeEEE
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---------------KDQILAAGDDHVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~  615 (1103)
                         +.++++|-..++++...++.|+   .+|.+++|.|.               +.++.+++.|++|++||+.++.++.+
T Consensus       256 ---dqtl~vW~~~t~~~k~~lR~hE---h~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~t  329 (406)
T KOG0295|consen  256 ---DQTLRVWVVATKQCKAELREHE---HPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFT  329 (406)
T ss_pred             ---CceEEEEEeccchhhhhhhccc---cceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEE
Confidence               6779999999999999999988   89999999763               25888999999999999999999999


Q ss_pred             EcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCC
Q 001310          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1103)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1103)
                      +.+|..  .|..++|+|.|++|+++.+|+++++||+.++++...+..|..-++++.|.                      
T Consensus       330 L~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh----------------------  385 (406)
T KOG0295|consen  330 LVGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFH----------------------  385 (406)
T ss_pred             Eecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecC----------------------
Confidence            998854  69999999999999999999999999999999999999999999999887                      


Q ss_pred             CCCccceeecccccccccc
Q 001310          696 EDVKPEISVEAENKSEVEK  714 (1103)
Q Consensus       696 ~d~~~l~s~~~d~~i~~w~  714 (1103)
                      .+..++++|+-|.++++|.
T Consensus       386 ~~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  386 KTAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCCceEEeccccceeeeee
Confidence            3445889999999999996

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=100.00  E-value=1.4e-32  Score=311.67  Aligned_cols=294  Identities=21%  Similarity=0.349  Sum_probs=256.6

Q ss_pred             eEecccC-CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC--eeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          327 AQTLIEG-SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       327 ~~~l~~h-~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      .+++.+| ...|.++.|||||+ .+++++.|+.+++|+..+++  .+..                   +.+|...|..++
T Consensus       151 ~~~~~~~~~~sv~~~~fs~~g~-~l~~~~~~~~i~~~~~~~~~~~~~~~-------------------l~~h~~~v~~~~  210 (456)
T KOG0266|consen  151 EQTLAGHECPSVTCVDFSPDGR-ALAAASSDGLIRIWKLEGIKSNLLRE-------------------LSGHTRGVSDVA  210 (456)
T ss_pred             eeeecccccCceEEEEEcCCCC-eEEEccCCCcEEEeecccccchhhcc-------------------ccccccceeeeE
Confidence            5666665 78999999999999 59999999999999997776  3332                   578999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEe-cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAY-HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~-~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  482 (1103)
                      |+|||+++++++.|++|+|||+ ..+..++   ++.+|...|++++|+|+|+  ++++|+.|++|+|||+.+++++..+.
T Consensus       211 fs~d~~~l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~  285 (456)
T KOG0266|consen  211 FSPDGSYLLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLK  285 (456)
T ss_pred             ECCCCcEEEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeee
Confidence            9999999999999999999999 4444444   7889999999999999997  89999999999999999999999999


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCc--cEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGL--GCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~--~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      +|.+.|.+++|  .+++.+|++++.|+.|++||+.++..  ...+..+..  +++++.|+|+++++++++.    ++.+.
T Consensus       286 ~hs~~is~~~f--~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~  359 (456)
T KOG0266|consen  286 GHSDGISGLAF--SPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLK  359 (456)
T ss_pred             ccCCceEEEEE--CCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEE
Confidence            99999999999  45778999999999999999999883  455554444  5999999999999999986    66799


Q ss_pred             EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~  638 (1103)
                      +||+..+.....+.+|......+.+...++.+.++++|+.|+.|++||..++..+..+..|. ...+..++++|..++++
T Consensus       360 ~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~  438 (456)
T KOG0266|consen  360 LWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIA  438 (456)
T ss_pred             EEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeee
Confidence            99999999999999988222245555667889999999999999999999999999988875 45688999999999999


Q ss_pred             EEE--CCCeEEEEEcC
Q 001310          639 VIA--NENRIKILETP  652 (1103)
Q Consensus       639 ~~~--~dg~i~iw~~~  652 (1103)
                      +++  .|+.+++|...
T Consensus       439 s~s~~~d~~~~~w~~~  454 (456)
T KOG0266|consen  439 SSSFEGDGLIRLWKYD  454 (456)
T ss_pred             ecCcCCCceEEEecCC
Confidence            998  68999999754

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=4.7e-34  Score=284.08  Aligned_cols=284  Identities=21%  Similarity=0.320  Sum_probs=248.3

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      -+..|..|.|.|+|++ |++|+..|.+.+|+..+-      .|             ..++..|..+|+++.||++|.+++
T Consensus        95 vkc~V~~v~WtPeGRR-Lltgs~SGEFtLWNg~~f------nF-------------EtilQaHDs~Vr~m~ws~~g~wmi  154 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRR-LLTGSQSGEFTLWNGTSF------NF-------------ETILQAHDSPVRTMKWSHNGTWMI  154 (464)
T ss_pred             cccceeeEEEcCCCce-eEeecccccEEEecCcee------eH-------------HHHhhhhcccceeEEEccCCCEEE
Confidence            3458999999999996 789999999999996321      11             124778999999999999999999


Q ss_pred             EEeCCCeEEEEEecCCCccccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310          413 VAYSKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  491 (1103)
                      +|+.+|.|++|+..-.. ++   .+.+ |...|.+++|+|+..  .+++++.||+|+|||....+....+.||.-.|.++
T Consensus       155 SgD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksv  228 (464)
T KOG0284|consen  155 SGDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSV  228 (464)
T ss_pred             EcCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCccee
Confidence            99999999999987643 22   2344 558999999999888  79999999999999999999989999999999999


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      .|+|..  .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++.    |..++++|+++.+.+..+
T Consensus       229 dWHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~  302 (464)
T KOG0284|consen  229 DWHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTY  302 (464)
T ss_pred             ccCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHh
Confidence            999875  59999999999999999999999999999999999999999999999986    667999999999999999


Q ss_pred             ecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310          572 QGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1103)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~  650 (1103)
                      ++|.   ..+.++.|+|-.. .|.+|+.||.|..|.+...+++..+.. .+...|.+++|+|-|.+|++|+.|.++++|.
T Consensus       303 r~Hk---kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~-AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~  378 (464)
T KOG0284|consen  303 RGHK---KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPP-AHDGEIWSLAYHPLGHILATGSNDRTVRFWT  378 (464)
T ss_pred             hcch---hhheeeccccccccceeeccCCCceEEEeccccccccCCCc-ccccceeeeeccccceeEeecCCCcceeeec
Confidence            9988   8999999999754 556699999999999986666655543 3445799999999999999999999999997


Q ss_pred             cC
Q 001310          651 TP  652 (1103)
Q Consensus       651 ~~  652 (1103)
                      -.
T Consensus       379 r~  380 (464)
T KOG0284|consen  379 RN  380 (464)
T ss_pred             cC
Confidence            54

>KOG0293 consensus WD40 repeat-containing protein [Function unknown]

Probab=100.00  E-value=2.8e-33  Score=278.41  Aligned_cols=293  Identities=16%  Similarity=0.180  Sum_probs=252.7

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      ++..|+..|.-+.||++|+|||+++.|.+..+|.+.....++...++.+|..+|..+.||||.+  +|++|+.|..+.+|
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdr--yLlaCg~~e~~~lw  296 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDR--YLLACGFDEVLSLW  296 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCC--eEEecCchHheeec
Confidence            3778999999999999999999999999999999987777777778999999999999999999  89999999999999


Q ss_pred             eCCCCceeEEee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310          471 DAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       471 d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      |+.+|.+...+. ++...+.+++|.|  ||..+++|+.|+++..||++......--......|.+++.++||+++++...
T Consensus       297 Dv~tgd~~~~y~~~~~~S~~sc~W~p--Dg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~  374 (519)
T KOG0293|consen  297 DVDTGDLRHLYPSGLGFSVSSCAWCP--DGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYDGKYVLLVTV  374 (519)
T ss_pred             cCCcchhhhhcccCcCCCcceeEEcc--CCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCCCcEEEEEec
Confidence            999999987774 4568899999955  7789999999999999999865432222223356899999999999999875


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                          +..|++++..+.........+    .+|++++.+.+++++++.-.+..+.+||++....+..+.+|.....+..-+
T Consensus       375 ----d~~i~l~~~e~~~dr~lise~----~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSC  446 (519)
T KOG0293|consen  375 ----DKKIRLYNREARVDRGLISEE----QPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSC  446 (519)
T ss_pred             ----ccceeeechhhhhhhcccccc----CceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEec
Confidence                556999998876655444443    589999999999999999999999999999888888888876655555666


Q ss_pred             Eec-CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310          630 FNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1103)
Q Consensus       630 ~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1103)
                      |.- +..++++|++|+.|+||+..+++++..+.+|...+++++++|                     .+...+|++++||
T Consensus       447 Fgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP---------------------~~p~m~ASasDDg  505 (519)
T KOG0293|consen  447 FGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNP---------------------ADPEMFASASDDG  505 (519)
T ss_pred             cCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCC---------------------CCHHHhhccCCCC
Confidence            664 558999999999999999999999999999999999999996                     4677799999999


Q ss_pred             cccccccc
Q 001310          709 KSEVEKPL  716 (1103)
Q Consensus       709 ~i~~w~~~  716 (1103)
                      +||+|...
T Consensus       506 tIRIWg~~  513 (519)
T KOG0293|consen  506 TIRIWGPS  513 (519)
T ss_pred             eEEEecCC
Confidence            99999865

>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]

Probab=100.00  E-value=1.8e-32  Score=267.72  Aligned_cols=295  Identities=15%  Similarity=0.238  Sum_probs=258.6

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      ++.+|.+.|.|+++.|-..++++|+.|++|+|||+.+|+...   ++.||...|..+++|+--.  ++++++.|+.|+.|
T Consensus       146 Vi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKCw  220 (460)
T KOG0285|consen  146 VISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKCW  220 (460)
T ss_pred             hhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEEE
Confidence            478999999999999999999999999999999999996444   7899999999999999877  89999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      |++..+.++.+.||-..|.+++.+|.-  ..|++|+.|.++++||+++......+.+|..+|.++.+.|-...+++++. 
T Consensus       221 DLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~-  297 (460)
T KOG0285|consen  221 DLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH-  297 (460)
T ss_pred             echhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC-
Confidence            999999999999999999999998865  48999999999999999999999999999999999999998889999976 


Q ss_pred             CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                         |.+|++||+..|+....+..|.   ..+.+++.+|....+++++.| .|+-|++..|..+..+.++.  ..+++++.
T Consensus       298 ---D~tvrlWDl~agkt~~tlt~hk---ksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~--~iintl~~  368 (460)
T KOG0285|consen  298 ---DSTVRLWDLRAGKTMITLTHHK---KSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN--AIINTLSV  368 (460)
T ss_pred             ---CceEEEeeeccCceeEeeeccc---ceeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc--ceeeeeee
Confidence               6679999999999998888887   899999999999888888876 58999999999998887664  45889998


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001310          631 NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1103)
Q Consensus       631 s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1103)
                      +.|| ++++|+++|.+.+||..++..++.......        |                             |+     
T Consensus       369 nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vq--------p-----------------------------GS-----  405 (460)
T KOG0285|consen  369 NSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQ--------P-----------------------------GS-----  405 (460)
T ss_pred             ccCc-eEEEcCCceEEEEEecCcCccccccccccc--------C-----------------------------Cc-----
Confidence            8877 888999999999999998865544321000        0                             00     


Q ss_pred             ccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCC
Q 001310          711 EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1103)
Q Consensus       711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~  765 (1103)
                                          ......|.+.+|...|.+|+++..|.+|++|.-+.
T Consensus       406 --------------------l~sEagI~as~fDktg~rlit~eadKtIk~~keDe  440 (460)
T KOG0285|consen  406 --------------------LESEAGIFASCFDKTGSRLITGEADKTIKMYKEDE  440 (460)
T ss_pred             --------------------cccccceeEEeecccCceEEeccCCcceEEEeccc
Confidence                                01345688899999999999999999999998443

>KOG2048 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.2e-28  Score=261.90  Aligned_cols=551  Identities=16%  Similarity=0.167  Sum_probs=376.8

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeecc-CCCccEEEEEECCCC
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNRVVWSPDG  408 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~~~~spdg  408 (1103)
                      ..--..+|.++|||.+.+ .||.+-.||.|.||++..+-...                  ..+. +....|.+++|+ +|
T Consensus        21 ~d~~Ps~I~slA~s~kS~-~lAvsRt~g~IEiwN~~~~w~~~------------------~vi~g~~drsIE~L~W~-e~   80 (691)
T KOG2048|consen   21 VDYKPSEIVSLAYSHKSN-QLAVSRTDGNIEIWNLSNNWFLE------------------PVIHGPEDRSIESLAWA-EG   80 (691)
T ss_pred             EeeeccceEEEEEeccCC-ceeeeccCCcEEEEccCCCceee------------------EEEecCCCCceeeEEEc-cC
Confidence            334456999999999998 58999999999999998754332                  1233 445789999999 56


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE--EeecCCC
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGA  486 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~  486 (1103)
                      ..|.+.+.+|+|.-||+.+++...   .+....+.|++++.+|.+.  .++.|+.||.+..++...++..+  .+....+
T Consensus        81 ~RLFS~g~sg~i~EwDl~~lk~~~---~~d~~gg~IWsiai~p~~~--~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~s  155 (691)
T KOG2048|consen   81 GRLFSSGLSGSITEWDLHTLKQKY---NIDSNGGAIWSIAINPENT--ILAIGCDDGVLYDFSIGPDKITYKRSLMRQKS  155 (691)
T ss_pred             CeEEeecCCceEEEEecccCceeE---EecCCCcceeEEEeCCccc--eEEeecCCceEEEEecCCceEEEEeecccccc
Confidence            677788899999999999986554   6677788999999999998  78999999988888888777664  3445568


Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-----C---CCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----A---PGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      .|.++.|++  ++..+++|+.||.|++||...+.......     .   ...-|.++.|-.++ .+++|    |..|.|.
T Consensus       156 RvLslsw~~--~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sg----DS~G~V~  228 (691)
T KOG2048|consen  156 RVLSLSWNP--TGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASG----DSAGTVT  228 (691)
T ss_pred             eEEEEEecC--CccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEe----cCCceEE
Confidence            899998854  66789999999999999999888766221     1   22246778877665 45554    4477899


Q ss_pred             EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCCCCCCCceEEEecCCCE
Q 001310          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLPENPRICFNKNGTL  636 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~~v~~v~~s~~g~~  636 (1103)
                      .||...+.+++.+..|.   ..|.+++..++++++++++.|+.|.-+...++..  +.......+...+.+++..++  .
T Consensus       229 FWd~~~gTLiqS~~~h~---adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~hdvrs~av~~~--~  303 (691)
T KOG2048|consen  229 FWDSIFGTLIQSHSCHD---ADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAHDVRSMAVIEN--A  303 (691)
T ss_pred             EEcccCcchhhhhhhhh---cceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcccceeeeeecc--e
Confidence            99999999999998888   8999999999999999999999999998776543  222222223346889998876  8


Q ss_pred             EEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                      +++|+.|.++.+-....-+...    |...    ...|.+.....              ...+++..--.+..+.+|.+.
T Consensus       304 l~sgG~d~~l~i~~s~~~~~~~----h~~~----~~~p~~~~v~~--------------a~~~~L~~~w~~h~v~lwrlG  361 (691)
T KOG2048|consen  304 LISGGRDFTLAICSSREFKNMD----HRQK----NLFPASDRVSV--------------APENRLLVLWKAHGVDLWRLG  361 (691)
T ss_pred             EEecceeeEEEEccccccCchh----hhcc----ccccccceeec--------------CccceEEEEeccccccceecc
Confidence            9999999988876554321111    1100    00011111100              111222233334556666655


Q ss_pred             ccCCc------cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCc
Q 001310          717 FARPS------ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1103)
Q Consensus       717 ~~~~~------~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1103)
                      .....      ....+.   ......|.+.+.||+|+.++.+.-. ..++|.++....           +++-...    
T Consensus       362 S~~~~g~~~~~~Llkl~---~k~~~nIs~~aiSPdg~~Ia~st~~-~~~iy~L~~~~~-----------vk~~~v~----  422 (691)
T KOG2048|consen  362 SVILQGEYNYIHLLKLF---TKEKENISCAAISPDGNLIAISTVS-RTKIYRLQPDPN-----------VKVINVD----  422 (691)
T ss_pred             CcccccccChhhheeee---cCCccceeeeccCCCCCEEEEeecc-ceEEEEeccCcc-----------eeEEEec----
Confidence            43111      111111   1235678999999999977766544 677777765321           1111111    


Q ss_pred             eeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCc--eeeEEec--CCCCCeeEEEEcCCCCCEEEEEeC
Q 001310          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTF--KTILTIM--PPSPTATSLAFNPHDNNVIAIGMD  864 (1103)
Q Consensus       791 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~--~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~  864 (1103)
                          +.+  ...-....+.|+-|+..++.++  ...+.+++..+.  +.+..+.  +....|..++.|| +|+++|+.+.
T Consensus       423 ----~~~--~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~Ss-dG~yiaa~~t  495 (691)
T KOG2048|consen  423 ----DVP--LALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSS-DGNYIAAIST  495 (691)
T ss_pred             ----cch--hhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccccCCCcceeEEEcC-CCCEEEEEec
Confidence                111  1334667788998888777776  467888877654  3333332  2346899999999 9999999999


Q ss_pred             CCeEEEEEcCCceeEEEeccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeee---cCCCcccCCCCce
Q 001310          865 DSTILIYNARSSEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ---TPDGVMTLAPSET  940 (1103)
Q Consensus       865 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~---~~~~~~~~~~~v~  940 (1103)
                      +|.|.+|++.+.+.......-...|++++|+| +.+.|+.+..++.+.-+|++..+........   .+.........+.
T Consensus       496 ~g~I~v~nl~~~~~~~l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l~~ws~~nt~nlpk~~~~l~~~~~  575 (691)
T KOG2048|consen  496 RGQIFVYNLETLESHLLKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNLTRWSKNNTRNLPKEPKTLIPGIP  575 (691)
T ss_pred             cceEEEEEcccceeecchhccCcceeeeeccccccCcEEEEecCCeEEEEecchhhhhhhhhccccccccChhhcCCCCc
Confidence            99999999998875544434457899999995 5688999999999999999553322211111   1111111224688


Q ss_pred             EEEEcCCCCEEEEE-eCCeEEEEECC
Q 001310          941 HIQFHKDQTRFLLV-HETHLAIYEAE  965 (1103)
Q Consensus       941 ~l~fs~dg~~l~~~-~d~~v~iwd~~  965 (1103)
                      .+.|+|........ ..+-+.+.|..
T Consensus       576 gisfd~~n~s~~~~~~a~w~~~id~~  601 (691)
T KOG2048|consen  576 GISFDPKNSSRFIVYDAHWSCLIDFS  601 (691)
T ss_pred             eEEeCCCCccEEEEEcCcEEEEEecC
Confidence            89998877665554 33445555543

>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]

Probab=100.00  E-value=5.9e-33  Score=300.87  Aligned_cols=264  Identities=14%  Similarity=0.197  Sum_probs=230.9

Q ss_pred             ccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccc---------ccccccccCCeeecCCCCCceeeccCCCCCCCC
Q 001310          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTL---------STEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE  803 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  803 (1103)
                      ....+.|..|++|+..++.|..|..|++|.+...++.+         .....+.......|...+.....  +  .+|.+
T Consensus       377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~--L--~GH~G  452 (707)
T KOG0263|consen  377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRT--L--YGHSG  452 (707)
T ss_pred             cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEE--e--ecCCC
Confidence            34678999999999999999999999999998644211         11111222234455444442332  2  36999


Q ss_pred             CeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1103)
                      +|....|+|+.++|++++ |+++++|.+.+..++..+.+|..+|..+.|+| -|.++|+++.|++.++|......+++.+
T Consensus       453 PVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P-~GyYFatas~D~tArLWs~d~~~PlRif  531 (707)
T KOG0263|consen  453 PVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP-RGYYFATASHDQTARLWSTDHNKPLRIF  531 (707)
T ss_pred             ceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC-CceEEEecCCCceeeeeecccCCchhhh
Confidence            999999999999999999 69999999999999999999999999999999 8999999999999999999999999999


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEE
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAI  961 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~i  961 (1103)
                      .+|.+.|.|+.|+|+..++++||.|.+|++||+.+|.     .++.+.||..   +|.+++|||+|++|++| .|+.|.+
T Consensus       532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-----~VRiF~GH~~---~V~al~~Sp~Gr~LaSg~ed~~I~i  603 (707)
T KOG0263|consen  532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-----SVRIFTGHKG---PVTALAFSPCGRYLASGDEDGLIKI  603 (707)
T ss_pred             cccccccceEEECCcccccccCCCCceEEEEEcCCCc-----EEEEecCCCC---ceEEEEEcCCCceEeecccCCcEEE
Confidence            9999999999999999999999999999999999977     5677788886   99999999999999996 8999999


Q ss_pred             EECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310          962 YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       962 wd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      ||+.++..+.. +.+|.+.|.++.||.||..||+|+.|++|++||+..-
T Consensus       604 WDl~~~~~v~~-l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~  651 (707)
T KOG0263|consen  604 WDLANGSLVKQ-LKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV  651 (707)
T ss_pred             EEcCCCcchhh-hhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence            99999999988 6689999999999999999999999999999999754

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=100.00  E-value=1.7e-33  Score=286.84  Aligned_cols=295  Identities=16%  Similarity=0.253  Sum_probs=253.0

Q ss_pred             CccceeEecccCCcCceEEEecC-CCceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          322 FPKTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~sp-dg~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      +|...+.++.||+..|+++.|.| .+. ||++|+.|+.|+||++.. +.++++                   +.||..+|
T Consensus       202 ~Pkk~~~~~~gH~kgvsai~~fp~~~h-LlLS~gmD~~vklW~vy~~~~~lrt-------------------f~gH~k~V  261 (503)
T KOG0282|consen  202 LPKKLSHNLSGHTKGVSAIQWFPKKGH-LLLSGGMDGLVKLWNVYDDRRCLRT-------------------FKGHRKPV  261 (503)
T ss_pred             ccHhheeeccCCccccchhhhccceee-EEEecCCCceEEEEEEecCcceehh-------------------hhcchhhh
Confidence            58899999999999999999999 665 999999999999999976 777776                   78999999


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      ..++|+++|..+++++.|+.|++||+++|+++..   +. -...+.|+.|.||+.. .+++|+.|+.|+.||+++++.++
T Consensus       262 rd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~---f~-~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvq  336 (503)
T KOG0282|consen  262 RDASFNNCGTSFLSASFDRFLKLWDTETGQVLSR---FH-LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQ  336 (503)
T ss_pred             hhhhccccCCeeeeeecceeeeeeccccceEEEE---Ee-cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHH
Confidence            9999999999999999999999999999987653   21 2346889999999955 78899999999999999999999


Q ss_pred             EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      .+..|-+.|..+.|.  +++..+++.+.|++++||+.+...... ..........++..+|+++++++-+.    ++.|.
T Consensus       337 eYd~hLg~i~~i~F~--~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~  410 (503)
T KOG0282|consen  337 EYDRHLGAILDITFV--DEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIA  410 (503)
T ss_pred             HHHhhhhheeeeEEc--cCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEE
Confidence            999999999999995  477899999999999999998776554 33444557788999999999998765    66788


Q ss_pred             EEeCCCC---eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC-C
Q 001310          559 EWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-G  634 (1103)
Q Consensus       559 iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-g  634 (1103)
                      ++.+...   ...+.+.+|... +.-..+.|+|||.+|++|+.||.+.+||..+-+.+..+..|.  ..+..+.|+|. .
T Consensus       411 ifs~~~~~r~nkkK~feGh~va-Gys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~--~~ci~v~wHP~e~  487 (503)
T KOG0282|consen  411 IFSTVPPFRLNKKKRFEGHSVA-GYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHD--QPCIGVDWHPVEP  487 (503)
T ss_pred             EEecccccccCHhhhhcceecc-CceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCC--cceEEEEecCCCc
Confidence            8876532   334567777632 345678999999999999999999999999999999998874  46899999994 5


Q ss_pred             CEEEEEECCCeEEEEE
Q 001310          635 TLLAVIANENRIKILE  650 (1103)
Q Consensus       635 ~~l~~~~~dg~i~iw~  650 (1103)
                      ..+|+++.+|.|++|+
T Consensus       488 Skvat~~w~G~Ikiwd  503 (503)
T KOG0282|consen  488 SKVATCGWDGLIKIWD  503 (503)
T ss_pred             ceeEecccCceeEecC
Confidence            6899999999999996

>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]

Probab=100.00  E-value=1.5e-32  Score=273.42  Aligned_cols=287  Identities=18%  Similarity=0.275  Sum_probs=243.9

Q ss_pred             ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  812 (1103)
                      ....|..+.|.|+|+.|++++..|.+.+|+...                          ..++....+|..+|+++.+++
T Consensus        95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~--------------------------fnFEtilQaHDs~Vr~m~ws~  148 (464)
T KOG0284|consen   95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTS--------------------------FNFETILQAHDSPVRTMKWSH  148 (464)
T ss_pred             cccceeeEEEcCCCceeEeecccccEEEecCce--------------------------eeHHHHhhhhcccceeEEEcc
Confidence            346789999999999999999999999998522                          122222335999999999999


Q ss_pred             CCCEEEEEc-CCeEEEEEcCCceeeEEecCC-CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEE
Q 001310          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT  890 (1103)
Q Consensus       813 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~  890 (1103)
                      +|.++++|+ +|.|++|+.+-.. ++.+..| ...|++++||| ....+++++.||+|+|||....+.-..+.||.-.|.
T Consensus       149 ~g~wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSp-nDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVk  226 (464)
T KOG0284|consen  149 NGTWMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSP-NDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVK  226 (464)
T ss_pred             CCCEEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCC-CCceeEEecCCCeEEEEeccCCchhheeccCCCCcc
Confidence            999999998 6999999987443 4444544 48999999999 677899999999999999999988889999999999


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceE
Q 001310          891 GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTC  969 (1103)
Q Consensus       891 ~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~  969 (1103)
                      +++|+|...++|++|.|..|++||..+|.     ++.++.+|..   .|..+.|+|++++|++ +.|..++++|+++.+.
T Consensus       227 svdWHP~kgLiasgskDnlVKlWDprSg~-----cl~tlh~HKn---tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE  298 (464)
T KOG0284|consen  227 SVDWHPTKGLIASGSKDNLVKLWDPRSGS-----CLATLHGHKN---TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE  298 (464)
T ss_pred             eeccCCccceeEEccCCceeEeecCCCcc-----hhhhhhhccc---eEEEEEEcCCCCeeEEccCCceEEEEehhHhHH
Confidence            99999999999999999999999999977     6667777776   8999999999999999 5899999999998877


Q ss_pred             EEEeeCCCCcCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEE
Q 001310          970 LKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIA 1048 (1103)
Q Consensus       970 ~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1048 (1103)
                      +.. +.+|...|+++.|+| ...+|.+|+.||.|..|.+...+.+..+.                  .+|-..|+  +++
T Consensus       299 l~~-~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~------------------~AHd~~iw--sl~  357 (464)
T KOG0284|consen  299 LFT-YRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP------------------PAHDGEIW--SLA  357 (464)
T ss_pred             HHH-hhcchhhheeeccccccccceeeccCCCceEEEeccccccccCCC------------------ccccccee--eee
Confidence            776 778999999999999 45678899999999999998544443333                  25777787  678


Q ss_pred             ECCCCCcEEEEEecCCcEEEEccCCCCCC
Q 001310         1049 AHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1077 (1103)
Q Consensus      1049 ~~p~~~~~l~~~~~dg~v~vw~~~~~~~~ 1077 (1103)
                      +||- |.+|++|+.|.++++|.-.-++.+
T Consensus       358 ~hPl-Ghil~tgsnd~t~rfw~r~rp~d~  385 (464)
T KOG0284|consen  358 YHPL-GHILATGSNDRTVRFWTRNRPGDK  385 (464)
T ss_pred             cccc-ceeEeecCCCcceeeeccCCCCCc
Confidence            9999 999999999999999986555544

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=100.00  E-value=5.6e-33  Score=269.75  Aligned_cols=274  Identities=22%  Similarity=0.323  Sum_probs=234.5

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      ..+.|.|+++..+   .+++|..|++|+|||..+-++++.                   +.||++.|-|+.|  |.+.|+
T Consensus       196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~~-------------------L~GHtGSVLCLqy--d~rvii  251 (499)
T KOG0281|consen  196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLKI-------------------LTGHTGSVLCLQY--DERVIV  251 (499)
T ss_pred             cCCceEEEEecch---hhhcccccCceEEeccccHHHHHh-------------------hhcCCCcEEeeec--cceEEE
Confidence            4679999999643   379999999999999998887765                   8899999999999  467999


Q ss_pred             EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee---EEeecCCCceE
Q 001310          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGHGAPVY  489 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~~~~v~  489 (1103)
                      +|+.|.+|+|||+++|+++.   ++-+|...|..+.|+..    ++++++.|.+|.+||+.....+   +.+.||...|+
T Consensus       252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN  324 (499)
T KOG0281|consen  252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN  324 (499)
T ss_pred             ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence            99999999999999999887   67799999999999853    7999999999999999876543   56789999999


Q ss_pred             EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1103)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1103)
                      .+.|    +.+++++++.|.+|++|+..+.+...++.+|...|.|+.+  .|+++++|+.    +.+|++||+..|.+++
T Consensus       325 vVdf----d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR  394 (499)
T KOG0281|consen  325 VVDF----DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR  394 (499)
T ss_pred             eecc----ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence            9988    4569999999999999999999999999999999877765  5788888875    7789999999999999


Q ss_pred             EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE---------EEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL---------TTIDAGGGLPENPRICFNKNGTLLAVI  640 (1103)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---------~~~~~~~~~~~v~~v~~s~~g~~l~~~  640 (1103)
                      .++||+   .-|.++.|.  .+.+++|+.||+|++||+..+...         ..+.  .+...|..+.|.  ...+++.
T Consensus       395 vLeGHE---eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv--~hsgRVFrLQFD--~fqIvss  465 (499)
T KOG0281|consen  395 VLEGHE---ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV--EHSGRVFRLQFD--EFQIISS  465 (499)
T ss_pred             HHhchH---Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh--hccceeEEEeec--ceEEEec
Confidence            999999   899999995  578999999999999999876432         2222  223456677774  6688999


Q ss_pred             ECCCeEEEEEcCCCCe
Q 001310          641 ANENRIKILETPESNS  656 (1103)
Q Consensus       641 ~~dg~i~iw~~~~~~~  656 (1103)
                      +.|.+|.|||..++..
T Consensus       466 sHddtILiWdFl~~~~  481 (499)
T KOG0281|consen  466 SHDDTILIWDFLNGPP  481 (499)
T ss_pred             cCCCeEEEEEcCCCCc
Confidence            9999999999987743

>KOG0645 consensus WD40 repeat protein [General function prediction only]

Probab=100.00  E-value=1.8e-30  Score=245.10  Aligned_cols=293  Identities=16%  Similarity=0.213  Sum_probs=236.7

Q ss_pred             ccccccEEEEEEecC-CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEE
Q 001310          731 KVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFA  809 (1103)
Q Consensus       731 ~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  809 (1103)
                      .+|.+++..++|+|. |..|++++.|..|++|+.....              -|.     |.  ..+ ..+|...|+++|
T Consensus        11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~--------------s~~-----ck--~vl-d~~hkrsVRsvA   68 (312)
T KOG0645|consen   11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGD--------------SWT-----CK--TVL-DDGHKRSVRSVA   68 (312)
T ss_pred             cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCC--------------cEE-----EE--Eec-cccchheeeeee
Confidence            458889999999999 8899999999999999865311              011     01  111 126999999999


Q ss_pred             EecCCCEEEEEc-CCeEEEEEcC--CceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEec
Q 001310          810 LSKNDAYLFSAS-GGVISLYIVM--TFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLE  883 (1103)
Q Consensus       810 ~s~d~~~l~~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~  883 (1103)
                      ++|.|++||+++ |.++.||.-.  +.+++.++.+|.++|.+++|++ +|.+||+++.|+.|.||.+..+   ++...+.
T Consensus        69 wsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~-sG~~LATCSRDKSVWiWe~deddEfec~aVL~  147 (312)
T KOG0645|consen   69 WSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSA-SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQ  147 (312)
T ss_pred             ecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcC-CCCEEEEeeCCCeEEEEEecCCCcEEEEeeec
Confidence            999999999999 8999999876  4578999999999999999999 9999999999999999999854   5788999


Q ss_pred             cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEE
Q 001310          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY  962 (1103)
Q Consensus       884 ~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iw  962 (1103)
                      .|+..|..+.|+|...+|+|+|.|.+|++|+-..+.  ...+.+.+.+|..   .|.+++|++.|..|+++ .|++++||
T Consensus       148 ~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dd--dW~c~~tl~g~~~---TVW~~~F~~~G~rl~s~sdD~tv~Iw  222 (312)
T KOG0645|consen  148 EHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDD--DWECVQTLDGHEN---TVWSLAFDNIGSRLVSCSDDGTVSIW  222 (312)
T ss_pred             cccccccEEEEcCCcceeEEeccCCeEEEEeecCCC--CeeEEEEecCccc---eEEEEEecCCCceEEEecCCcceEee
Confidence            999999999999999999999999999999887322  2446777888775   79999999999999985 88999999


Q ss_pred             ECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCce
Q 001310          963 EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHV 1042 (1103)
Q Consensus       963 d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 1042 (1103)
                      ...     ..+...|++++..+.|.  ...|++++.|+.|++|.-.....-..+... +           .....|...|
T Consensus       223 ~~~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~-~-----------~~~~aHe~dV  283 (312)
T KOG0645|consen  223 RLY-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLL-A-----------KKEGAHEVDV  283 (312)
T ss_pred             eec-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHH-H-----------hhhccccccc
Confidence            865     22344578899999998  457999999999999987643222222100 0           0112477767


Q ss_pred             eeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310         1043 YPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1043 ~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                      .  ++.++|...++|++|++||.|++|++.
T Consensus       284 N--sV~w~p~~~~~L~s~~DDG~v~~W~l~  311 (312)
T KOG0645|consen  284 N--SVQWNPKVSNRLASGGDDGIVNFWELE  311 (312)
T ss_pred             c--eEEEcCCCCCceeecCCCceEEEEEec
Confidence            6  678888668999999999999999974

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=100.00  E-value=1.8e-30  Score=283.19  Aligned_cols=287  Identities=25%  Similarity=0.412  Sum_probs=254.6

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +++++|.++|++++|+|+++ ++++|+.||.|.+||+.+++....                   +.+|...+..+.|+|+
T Consensus         3 ~~~~~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~~-------------------~~~~~~~i~~~~~~~~   62 (289)
T cd00200           3 RTLKGHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLRT-------------------LKGHTGPVRDVAASAD   62 (289)
T ss_pred             hHhcccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEEE-------------------EecCCcceeEEEECCC
Confidence            56789999999999999998 688999999999999998875543                   5578899999999999


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      +++|++++.+|.|++||+.+++...   .+..|...|.++.|+++++  ++++++.|+.|++||+.+++....+..|...
T Consensus        63 ~~~l~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  137 (289)
T cd00200          63 GTYLASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDW  137 (289)
T ss_pred             CCEEEEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCc
Confidence            9999999999999999999875444   5678988999999999977  7888888999999999999999999999999


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1103)
                      +.++++++.  +.++++++.||.|++||+...+....+..+...+.+++|+|+++.+++++.    ++.+.+||+.+++.
T Consensus       138 i~~~~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~  211 (289)
T cd00200         138 VNSVAFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKC  211 (289)
T ss_pred             EEEEEEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCce
Confidence            999999764  568888888999999999988888888888889999999999999998875    56699999999988


Q ss_pred             EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1103)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~  647 (1103)
                      +..+..+.   ..+.++.|+|++..+++++.+|.|++|++.+++....+..+  ...+.+++|+|+++++++++.|+.++
T Consensus       212 ~~~~~~~~---~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~  286 (289)
T cd00200         212 LGTLRGHE---NGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIR  286 (289)
T ss_pred             ecchhhcC---CceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEE
Confidence            88887766   79999999999888888888999999999999888888754  34689999999999999999999999


Q ss_pred             EEE
Q 001310          648 ILE  650 (1103)
Q Consensus       648 iw~  650 (1103)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            995

>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.98  E-value=2.4e-30  Score=293.43  Aligned_cols=291  Identities=21%  Similarity=0.304  Sum_probs=254.6

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC-
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA-  472 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-  472 (1103)
                      .|...|.++.||+||+++++++.++.+++|+..+.+. .....+.+|...|.+++|+||++  ++++++.|++|+|||+ 
T Consensus       157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~  233 (456)
T KOG0266|consen  157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLK  233 (456)
T ss_pred             cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeecc
Confidence            3478999999999999999999999999999977662 12335689999999999999999  8999999999999999 


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      ..+..++++++|...|++++|++  +++++++|+.|++|++||+.+++....+..|...|.+++|++++++|++++.   
T Consensus       234 ~~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---  308 (456)
T KOG0266|consen  234 DDGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---  308 (456)
T ss_pred             CCCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC---
Confidence            56689999999999999999976  5589999999999999999999999999999999999999999999999865   


Q ss_pred             CceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC-CCCceEE
Q 001310          553 GESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRIC  629 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~  629 (1103)
                       ++.|++||+.++.  +...+.++.... .+..+.|+|++.++++++.|+.+++||+..+.....+..+... ..+.+..
T Consensus       309 -d~~i~vwd~~~~~~~~~~~~~~~~~~~-~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~  386 (456)
T KOG0266|consen  309 -DGTIRVWDLETGSKLCLKLLSGAENSA-PVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPT  386 (456)
T ss_pred             -CccEEEEECCCCceeeeecccCCCCCC-ceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccc
Confidence             7779999999999  567888877333 7999999999999999999999999999999999988877553 1334555


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCCeeEecccc-ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec--c
Q 001310          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--A  706 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~  706 (1103)
                      .++.+.++++|+.|+.|.+|+..++..+..+.+| ...+..+.++                      +...++++.+  .
T Consensus       387 ~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~~~~~~~~~~~----------------------~~~~~~~s~s~~~  444 (456)
T KOG0266|consen  387 LSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHSKAAVSDLSSH----------------------PTENLIASSSFEG  444 (456)
T ss_pred             ccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCCCCceeccccC----------------------CCcCeeeecCcCC
Confidence            6789999999999999999999999999999999 7777777776                      5566677776  6


Q ss_pred             cccccccccc
Q 001310          707 ENKSEVEKPL  716 (1103)
Q Consensus       707 d~~i~~w~~~  716 (1103)
                      |+.+++|...
T Consensus       445 d~~~~~w~~~  454 (456)
T KOG0266|consen  445 DGLIRLWKYD  454 (456)
T ss_pred             CceEEEecCC
Confidence            7889999754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.98  E-value=8.5e-30  Score=266.19  Aligned_cols=628  Identities=17%  Similarity=0.169  Sum_probs=354.5

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ..+-.|.+|++.|+.+.|||-...|||+||.|..|+||.+..|-...-             .-....+.+..-.|.++.|
T Consensus        70 r~i~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~L-------------Sape~~~g~~~~~vE~l~f  136 (1012)
T KOG1445|consen   70 RDIGILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKL-------------SAPEIDVGGGNVIVECLRF  136 (1012)
T ss_pred             cccceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCccccc-------------CCcceeecCCceEEEEeec
Confidence            455678899999999999997777999999999999999985532210             0122235555678899999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-CCceeEEeec
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEG  483 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~  483 (1103)
                      +|...-|...+..|+++|||+.+++.+.   .+.+|...|.++.|+.||+  +|++.+.|+.|+|||.+ .++.+++.++
T Consensus       137 HpTaDgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~  211 (1012)
T KOG1445|consen  137 HPTADGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEG  211 (1012)
T ss_pred             ccCcCceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccc
Confidence            9977666666788999999999986554   7889999999999999999  89999999999999987 4678888888


Q ss_pred             CCCce-EEEEeeecCCccEEEEEECC----CeEEEEEcCCCCe-eEEecCC-CccEEEEEEccCCCEEEEEecCCCCcee
Q 001310          484 HGAPV-YSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA-RVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1103)
Q Consensus       484 ~~~~v-~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~-~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1103)
                      |.+.- ..+.|  .++-..|++.+.+    ..|++||...-.. ..++... ...|.---|.||.++|+.++   .++..
T Consensus       212 H~~~rdsRv~w--~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaG---KG~~~  286 (1012)
T KOG1445|consen  212 HGGMRDSRVLW--AGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAG---KGTNK  286 (1012)
T ss_pred             cccchhheeee--ccchhhhhhcccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEec---CCcce
Confidence            87652 22334  3444566666654    4589999876433 2232221 22455667899999998876   35777


Q ss_pred             EEEEeCCCCeeEEE--EecccccCCceEEEEEcCCCCEEEE---------------------------------------
Q 001310          557 LVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILA---------------------------------------  595 (1103)
Q Consensus       557 i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~---------------------------------------  595 (1103)
                      ++.+.+...+..-.  ++..-  .......++-|....-+.                                       
T Consensus       287 l~~lE~~d~qPyLs~v~~~tl--e~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~  364 (1012)
T KOG1445|consen  287 LFMLEMQDRQPYLSHVFELTL--EEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETR  364 (1012)
T ss_pred             EEEEEecCCCcchhhhhhhcc--hhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCcccc
Confidence            88888765443110  00000  000011111111000000                                       


Q ss_pred             EeCCCc-EEEEECCCCeeEEEEcC------CCCC----------------CCCceEEEec--------------C-CCEE
Q 001310          596 AGDDHV-IKIWDMNKVQLLTTIDA------GGGL----------------PENPRICFNK--------------N-GTLL  637 (1103)
Q Consensus       596 ~~~dg~-i~iwd~~~~~~~~~~~~------~~~~----------------~~v~~v~~s~--------------~-g~~l  637 (1103)
                      |..-+. ---|=-.+.+.+.....      |+..                ..+......|              | ...-
T Consensus       365 G~~p~~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qp  444 (1012)
T KOG1445|consen  365 GAEPGCTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQP  444 (1012)
T ss_pred             CCccCcCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCC
Confidence            000000 00011111111111100      0000                0000000000              0 0000


Q ss_pred             EEEECCCeEEEEEcC-----CC----C-eeEeccccccceeeeE------EecCCcee--------eeeccCCceEecCC
Q 001310          638 AVIANENRIKILETP-----ES----N-SVDAAGVLSDNLRKLS------VNPISTVT--------GAGIANGSVSVNED  693 (1103)
Q Consensus       638 ~~~~~dg~i~iw~~~-----~~----~-~~~~~~~~~~~i~~~~------~~~~~~~~--------~~~~~~~~~~~~~~  693 (1103)
                      ++. ....++-.+..     .+    . .....++....+..+.      ..|....+        ..++..+. .. ++
T Consensus       445 aV~-~~~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~k-sv-Pe  521 (1012)
T KOG1445|consen  445 AVP-KKEEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGK-SV-PE  521 (1012)
T ss_pred             CcC-cchhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccc-cC-CC
Confidence            000 00000000000     00    0 0000000111110000      00000000        00000000 00 00


Q ss_pred             CCCC--Cccce-------eecc------ccccccccccccCCcc----ceeeeccCccccccEEEEEEecCCcEEE--Ee
Q 001310          694 PKED--VKPEI-------SVEA------ENKSEVEKPLFARPSE----CQSLLLPSKVKANKISRLTYNNGGQAIF--AL  752 (1103)
Q Consensus       694 ~s~d--~~~l~-------s~~~------d~~i~~w~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~s~~g~~l~--~~  752 (1103)
                      ..|.  |..+-       +.+.      -|.+.-+.-..+....    ...++--...-.+.-..  |..+..+++  ..
T Consensus       522 ~~~~~~g~~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnG--fcan~~rvAVPL~  599 (1012)
T KOG1445|consen  522 QPPVNFGKPISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNG--FCANNKRVAVPLA  599 (1012)
T ss_pred             CCCcccCCCccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCc--eeeccceEEEEec
Confidence            0000  00000       0000      0111111100000000    00000000000111122  222333333  34


Q ss_pred             ecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec-CCCEEEEEc-CCeEEEEEc
Q 001310          753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSAS-GGVISLYIV  830 (1103)
Q Consensus       753 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~~-dg~i~iwd~  830 (1103)
                      +..|.|-||+++.....+++....                      .-....|+.+.|.| |.+.||++. ||.|++|.+
T Consensus       600 g~gG~iai~el~~PGrLPDgv~p~----------------------l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~  657 (1012)
T KOG1445|consen  600 GSGGVIAIYELNEPGRLPDGVMPG----------------------LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRL  657 (1012)
T ss_pred             CCCceEEEEEcCCCCCCCcccccc----------------------cccCceeeecccCCCChHHeeecccCceEEEEEe
Confidence            567999999998876655555332                      12566788999998 677888887 699999999


Q ss_pred             CCce-------eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEE
Q 001310          831 MTFK-------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVS  903 (1103)
Q Consensus       831 ~~~~-------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s  903 (1103)
                      ..+.       .-..+..|...|+++.|+|--...|++++.|-+|++||+.+++....+.+|++.|..++|||||+.+|+
T Consensus       658 ~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~At  737 (1012)
T KOG1445|consen  658 TANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIAT  737 (1012)
T ss_pred             ccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceee
Confidence            7543       234567899999999999976789999999999999999999999999999999999999999999999


Q ss_pred             EeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-E----eCCeEEEEECCCce--EEEEeeCC
Q 001310          904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V----HETHLAIYEAEELT--CLKQWFPI  976 (1103)
Q Consensus       904 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~----~d~~v~iwd~~~~~--~~~~~~~~  976 (1103)
                      .+.||+|++|+...++.    .+..-.+.  ....-..+.|.-||+++++ |    ++.+|.+||..+..  .+.+....
T Consensus       738 VcKDg~~rVy~Prs~e~----pv~Eg~gp--vgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lD  811 (1012)
T KOG1445|consen  738 VCKDGTLRVYEPRSREQ----PVYEGKGP--VGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLD  811 (1012)
T ss_pred             eecCceEEEeCCCCCCC----ccccCCCC--ccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeec
Confidence            99999999999988652    22222222  2234567899999999987 5    34579999987543  22221110


Q ss_pred             CCcCeEEEEEccCCCE-EEEEecCCcEEEEeCCCc
Q 001310          977 SSVPISQATFSCDCRM-VFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       977 h~~~v~~l~fs~dg~~-l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      -...+.--.+.+|... ++||-.|..|.+|++...
T Consensus       812 vaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e  846 (1012)
T KOG1445|consen  812 VAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE  846 (1012)
T ss_pred             ccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence            1111122234456654 667778999999998654

>KOG0282 consensus mRNA splicing factor [Function unknown]

Probab=99.97  E-value=2.1e-31  Score=271.56  Aligned_cols=290  Identities=15%  Similarity=0.192  Sum_probs=253.3

Q ss_pred             eccCCCccEEEEEECC-CCCEEEEEeCCCeEEEEEecC-CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310          391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~  468 (1103)
                      .+.||+..|+++.|.| .+.+|++++.|+.|+||++-. +++++   ++.+|..+|.+++|+++|.  .++|+|.|+.|+
T Consensus       209 ~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr---tf~gH~k~Vrd~~~s~~g~--~fLS~sfD~~lK  283 (503)
T KOG0282|consen  209 NLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR---TFKGHRKPVRDASFNNCGT--SFLSASFDRFLK  283 (503)
T ss_pred             eccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh---hhhcchhhhhhhhccccCC--eeeeeecceeee
Confidence            4889999999999999 899999999999999999987 65565   7889999999999999999  799999999999


Q ss_pred             EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      +||+++|+++..+. ....++++.|+|++ .+.+++|+.|+.|+.||+++++....+..|-+.|..+.|-++|+++++.+
T Consensus       284 lwDtETG~~~~~f~-~~~~~~cvkf~pd~-~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS  361 (503)
T KOG0282|consen  284 LWDTETGQVLSRFH-LDKVPTCVKFHPDN-QNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS  361 (503)
T ss_pred             eeccccceEEEEEe-cCCCceeeecCCCC-CcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence            99999999999986 45678899998875 57999999999999999999999889999999999999999999999998


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---eEEEEcCCCCCCCC
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---LLTTIDAGGGLPEN  625 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v  625 (1103)
                      .    +..+++|+...+-.+.......  .....++..+|+++++++-+.|+.|.++.+...-   ..+.+.+|.-...-
T Consensus       362 D----dks~riWe~~~~v~ik~i~~~~--~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys  435 (503)
T KOG0282|consen  362 D----DKSVRIWENRIPVPIKNIADPE--MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYS  435 (503)
T ss_pred             c----CccEEEEEcCCCccchhhcchh--hccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCce
Confidence            6    5569999999887776655544  3467889999999999999999999999865432   22344555433345


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec
Q 001310          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1103)
                      ..+.|||||.+|++|..||.+.+||..+.+.+..++.|...+..+.|.|.                     ....+++++
T Consensus       436 ~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wHP~---------------------e~Skvat~~  494 (503)
T KOG0282|consen  436 CQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWHPV---------------------EPSKVATCG  494 (503)
T ss_pred             eeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEecCC---------------------CcceeEecc
Confidence            67999999999999999999999999999999999999999999999974                     345689999


Q ss_pred             ccccccccc
Q 001310          706 AENKSEVEK  714 (1103)
Q Consensus       706 ~d~~i~~w~  714 (1103)
                      .+|.|++|+
T Consensus       495 w~G~Ikiwd  503 (503)
T KOG0282|consen  495 WDGLIKIWD  503 (503)
T ss_pred             cCceeEecC
Confidence            999999996

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=99.97  E-value=1.2e-31  Score=260.44  Aligned_cols=278  Identities=16%  Similarity=0.256  Sum_probs=235.1

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      ....|.|+.+  |...+++|..|++|+|||.++-.+++   .+.||++.|.|+.|.  .+  ++++|+.|.+|+|||+++
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~t  266 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNT  266 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccC
Confidence            4468999988  56789999999999999999987766   688999999999984  45  899999999999999999


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      |+++.++-+|...|..+.|+    ..++++++.|.++.+||+.....   ...+.+|...|+.+.|+.  ++++++++  
T Consensus       267 ge~l~tlihHceaVLhlrf~----ng~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd~--kyIVsASg--  338 (499)
T KOG0281|consen  267 GEPLNTLIHHCEAVLHLRFS----NGYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASG--  338 (499)
T ss_pred             CchhhHHhhhcceeEEEEEe----CCEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeecccc--ceEEEecC--
Confidence            99999999999999999984    24999999999999999987663   335678888999888864  58988865  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                        +.+|++|++.+++.++.+.+|.   ..|.|+.+  .++.+++|+.|.+|++||+..|.++..+.+|..  -|.++.|.
T Consensus       339 --DRTikvW~~st~efvRtl~gHk---RGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRFd  409 (499)
T KOG0281|consen  339 --DRTIKVWSTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRFD  409 (499)
T ss_pred             --CceEEEEeccceeeehhhhccc---ccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheeec
Confidence              7789999999999999999998   78888776  578999999999999999999999999998855  58999996


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCCe---------eEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce
Q 001310          632 KNGTLLAVIANENRIKILETPESNS---------VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1103)
Q Consensus       632 ~~g~~l~~~~~dg~i~iw~~~~~~~---------~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1103)
                        .+.+++|+.||+|++||+..+..         +..+..|.+.|..+.|.                        ...++
T Consensus       410 --~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQFD------------------------~fqIv  463 (499)
T KOG0281|consen  410 --NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQFD------------------------EFQII  463 (499)
T ss_pred             --CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEeec------------------------ceEEE
Confidence              67899999999999999987632         33444566666655553                        56688


Q ss_pred             eeccccccccccccccCCccce
Q 001310          703 SVEAENKSEVEKPLFARPSECQ  724 (1103)
Q Consensus       703 s~~~d~~i~~w~~~~~~~~~~~  724 (1103)
                      +.+.|.+|.+||+..+.+....
T Consensus       464 sssHddtILiWdFl~~~~~~~~  485 (499)
T KOG0281|consen  464 SSSHDDTILIWDFLNGPPSAAE  485 (499)
T ss_pred             eccCCCeEEEEEcCCCCccccc
Confidence            9999999999998765554433

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.97  E-value=1e-30  Score=243.12  Aligned_cols=290  Identities=16%  Similarity=0.214  Sum_probs=255.1

Q ss_pred             EecccCCcCceEEEecC---CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          328 QTLIEGSSSPMSMDFHP---VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~sp---dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      .+-.||+.+|..++|||   +| ++|++++.|+.-.+-+-++|.=+.+                   +.||.+.|+...+
T Consensus         8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwigt-------------------feghkgavw~~~l   67 (334)
T KOG0278|consen    8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIGT-------------------FEGHKGAVWSATL   67 (334)
T ss_pred             eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEEe-------------------eeccCcceeeeec
Confidence            34589999999999985   77 5899999999999999999988876                   7799999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEeec
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEG  483 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~  483 (1103)
                      ..+..+-|+++.|-+.+|||.-+|..+.   .+ .|..-|.+++|+.|.+  +|++|+.++.+||+|++..+ +...+.+
T Consensus        68 ~~na~~aasaaadftakvw~a~tgdelh---sf-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g  141 (334)
T KOG0278|consen   68 NKNATRAASAAADFTAKVWDAVTGDELH---SF-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG  141 (334)
T ss_pred             Cchhhhhhhhcccchhhhhhhhhhhhhh---hh-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence            9999999999999999999999998776   33 5888999999999999  79999999999999998765 4578899


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      |.+.|..+.|..  ..+.+++.+.|++||+||.+++.....+.. ..+++++.++++|++|..+..     +.|..||..
T Consensus       142 htg~Ir~v~wc~--eD~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~g-----ssV~Fwdak  213 (334)
T KOG0278|consen  142 HTGGIRTVLWCH--EDKCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAYG-----SSVKFWDAK  213 (334)
T ss_pred             CCCcceeEEEec--cCceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEecC-----ceeEEeccc
Confidence            999999998864  336788889999999999999998887764 458999999999999988753     349999999


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE-cCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      +-..++.+....    .|.+..++|+...+++|++|..++.||..+|+.+..+ .+|  ..+|.|+.|+|+|...++|+.
T Consensus       214 sf~~lKs~k~P~----nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh--~gpVhcVrFSPdGE~yAsGSE  287 (334)
T KOG0278|consen  214 SFGLLKSYKMPC----NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH--FGPVHCVRFSPDGELYASGSE  287 (334)
T ss_pred             cccceeeccCcc----ccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC--CCceEEEEECCCCceeeccCC
Confidence            999988887654    7899999999999999999999999999999999886 433  467999999999999999999


Q ss_pred             CCeEEEEEcCCCCee
Q 001310          643 ENRIKILETPESNSV  657 (1103)
Q Consensus       643 dg~i~iw~~~~~~~~  657 (1103)
                      ||+|++|....++..
T Consensus       288 DGTirlWQt~~~~~~  302 (334)
T KOG0278|consen  288 DGTIRLWQTTPGKTY  302 (334)
T ss_pred             CceEEEEEecCCCch
Confidence            999999998766443

>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=6.5e-30  Score=235.75  Aligned_cols=268  Identities=20%  Similarity=0.314  Sum_probs=236.6

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      ++..|+++|.++.|+-||+|.++++.|.+|++|+...|.+++   +..+|...|..++.+.|+.  .+++|+.|+.|.+|
T Consensus        12 ~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~vw   86 (307)
T KOG0316|consen   12 ILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQVW   86 (307)
T ss_pred             eecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEEEE
Confidence            477899999999999999999999999999999999998777   7889999999999999998  69999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      |+++|+.++.+.+|.+.|+.+.|+  ++...+++|+.|..+++||.++..  +++.+......|.++..+  +..+++++
T Consensus        87 DV~TGkv~Rr~rgH~aqVNtV~fN--eesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIvaGS  162 (307)
T KOG0316|consen   87 DVNTGKVDRRFRGHLAQVNTVRFN--EESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVAGS  162 (307)
T ss_pred             EcccCeeeeecccccceeeEEEec--CcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEeec
Confidence            999999999999999999999994  466799999999999999988654  445566666677777664  45677776


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1103)
                      .    +++++.||++.|+....+.+     .+|+++.|+++++..++++.|+++++.|-.+|++++.+.+|.....-..+
T Consensus       163 ~----DGtvRtydiR~G~l~sDy~g-----~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc  233 (307)
T KOG0316|consen  163 V----DGTVRTYDIRKGTLSSDYFG-----HPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC  233 (307)
T ss_pred             c----CCcEEEEEeecceeehhhcC-----CcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence            5    67799999999998777776     45999999999999999999999999999999999999988776555678


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccc-eeeeEEecCC
Q 001310          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN-LRKLSVNPIS  676 (1103)
Q Consensus       629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~-i~~~~~~~~~  676 (1103)
                      +++.....+++|++||.+.+||+.....+..+..+... +..+++.|.-
T Consensus       234 ~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~  282 (307)
T KOG0316|consen  234 CLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTM  282 (307)
T ss_pred             eecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecccCc
Confidence            88888889999999999999999999999888888777 7788887643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=8.3e-29  Score=303.99  Aligned_cols=294  Identities=14%  Similarity=0.172  Sum_probs=238.2

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CC
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DG  408 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg  408 (1103)
                      +..|.+.|++++|+|+|+ ++|+|+.|+.|+|||+.+...... .          .......+. +...|.+++|+| ++
T Consensus       479 ~~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~  545 (793)
T PLN00181        479 LLNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIK  545 (793)
T ss_pred             ccCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCC
Confidence            456999999999999998 799999999999999864211000 0          000000122 346899999987 58


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      .+||+++.||+|++||+.+++.+.   .+.+|...|++++|+| ++.  +|++|+.|++|++||+.++.++..+..+ ..
T Consensus       546 ~~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~  619 (793)
T PLN00181        546 SQVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-AN  619 (793)
T ss_pred             CEEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CC
Confidence            899999999999999999876554   6789999999999997 667  8999999999999999999999888755 67


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCC-eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-  565 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-  565 (1103)
                      |.++.|.+ +++.++++|+.||.|++||+++.. ....+..|...|.++.|. ++.++++++.    ++.|++||+..+ 
T Consensus       620 v~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~  693 (793)
T PLN00181        620 ICCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSI  693 (793)
T ss_pred             eEEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCc
Confidence            88888853 467899999999999999998765 455677888899999997 7888888875    667999999743 


Q ss_pred             -----eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC-----------CCCCCCCceEE
Q 001310          566 -----AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLPENPRIC  629 (1103)
Q Consensus       566 -----~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~  629 (1103)
                           ..+..+.+|.   ..+..++|++++.+|++|+.|+.|++|+......+..+..           ..+...|.+++
T Consensus       694 ~~~~~~~l~~~~gh~---~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~  770 (793)
T PLN00181        694 SGINETPLHSFMGHT---NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVC  770 (793)
T ss_pred             cccCCcceEEEcCCC---CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEE
Confidence                 5677888877   8899999999999999999999999999876654433211           12234589999


Q ss_pred             EecCCCEEEEEECCCeEEEEEc
Q 001310          630 FNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      |+|++..|++|+.+|.|++|++
T Consensus       771 ws~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        771 WRGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             EcCCCCeEEEecCCCcEEEEec
Confidence            9999999999999999999986

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.97  E-value=2e-28  Score=266.89  Aligned_cols=285  Identities=23%  Similarity=0.342  Sum_probs=253.4

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.++|.+++|+|++++|++++.+|.|++|++.+++...   .+..|...+..+.|+|+++  .+++++.|+.|++||
T Consensus         5 ~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~~   79 (289)
T cd00200           5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLWD   79 (289)
T ss_pred             hcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEEE
Confidence            56899999999999999999999999999999999876433   5678999999999999997  799999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      +.+++.+..+..|...+.++.+++.  +.++++++.||.+++||+.+.+....+..+...+.+++|+|++.++++++.  
T Consensus        80 ~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~--  155 (289)
T cd00200          80 LETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ--  155 (289)
T ss_pred             cCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC--
Confidence            9998899999999999999999754  568888888999999999988888888888889999999999998888763  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                        ++.|++||+.+++.+..+..+.   ..+.++.|+|+++.+++++.++.|++||+..++.+..+..+.  ..+.+++|+
T Consensus       156 --~~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~  228 (289)
T cd00200         156 --DGTIKLWDLRTGKCVATLTGHT---GEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFS  228 (289)
T ss_pred             --CCcEEEEEccccccceeEecCc---cccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEc
Confidence              5569999999998888888766   789999999999999999999999999999988888775543  368999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1103)
Q Consensus       632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1103)
                      |++.++++++.++.+++|+..+++....+..+...+.+++++                      +++..+++++.|+.++
T Consensus       229 ~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~~l~~~~~d~~i~  286 (289)
T cd00200         229 PDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWS----------------------PDGKRLASGSADGTIR  286 (289)
T ss_pred             CCCcEEEEEcCCCcEEEEEcCCceeEEEccccCCcEEEEEEC----------------------CCCCEEEEecCCCeEE
Confidence            998888888889999999999988888888888888888887                      6788899999999999


Q ss_pred             ccc
Q 001310          712 VEK  714 (1103)
Q Consensus       712 ~w~  714 (1103)
                      +|+
T Consensus       287 iw~  289 (289)
T cd00200         287 IWD  289 (289)
T ss_pred             ecC
Confidence            996

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.97  E-value=5.8e-29  Score=254.51  Aligned_cols=287  Identities=19%  Similarity=0.225  Sum_probs=243.5

Q ss_pred             ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      ..+.|. .|++++|||...+=+|+.+. -.+.||+..+....++                   +......|.++.|-.||
T Consensus        22 ~~ke~~-~vssl~fsp~~P~d~aVt~S-~rvqly~~~~~~~~k~-------------------~srFk~~v~s~~fR~DG   80 (487)
T KOG0310|consen   22 VHKEHN-SVSSLCFSPKHPYDFAVTSS-VRVQLYSSVTRSVRKT-------------------FSRFKDVVYSVDFRSDG   80 (487)
T ss_pred             cccccC-cceeEecCCCCCCceEEecc-cEEEEEecchhhhhhh-------------------HHhhccceeEEEeecCC
Confidence            345565 99999999966543444433 6799999988776654                   33456789999999999


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  488 (1103)
                      ++||+|+..|.|+|+|+++...++   .+.+|+.+|..+.|+|++.. .+++|++|+.+++||+.+......+.+|.+.|
T Consensus        81 ~LlaaGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYV  156 (487)
T KOG0310|consen   81 RLLAAGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYV  156 (487)
T ss_pred             eEEEccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCccee
Confidence            999999999999999977644444   57899999999999998876 89999999999999999999877999999999


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-e
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-I  567 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~  567 (1103)
                      .+.+++|. ++..+++|+.||.|++||.+.......--.|+.+|..+.+-|.|..++++++     +.+++||+.+|. .
T Consensus       157 R~g~~~~~-~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-----n~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  157 RCGDISPA-NDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-----NSVKVWDLTTGGQL  230 (487)
T ss_pred             EeeccccC-CCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-----CeEEEEEecCCcee
Confidence            99999875 5579999999999999999998666666678899999999999999999874     349999999654 4


Q ss_pred             EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1103)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~  647 (1103)
                      +..+..|.   ..|+|+++..++..|++|+-|+.+++||+.+.+.+..+...   .+|.+++.+|++..++.|..+|.+.
T Consensus       231 l~~~~~H~---KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~---~pvLsiavs~dd~t~viGmsnGlv~  304 (487)
T KOG0310|consen  231 LTSMFNHN---KTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP---GPVLSIAVSPDDQTVVIGMSNGLVS  304 (487)
T ss_pred             hhhhhccc---ceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc---cceeeEEecCCCceEEEecccceee
Confidence            44444466   89999999999999999999999999999999999998776   4589999999999999999999887


Q ss_pred             EEEcC
Q 001310          648 ILETP  652 (1103)
Q Consensus       648 iw~~~  652 (1103)
                      +-+..
T Consensus       305 ~rr~~  309 (487)
T KOG0310|consen  305 IRRRE  309 (487)
T ss_pred             eehhh
Confidence            76433

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.97  E-value=5.6e-30  Score=255.71  Aligned_cols=298  Identities=16%  Similarity=0.223  Sum_probs=257.1

Q ss_pred             ccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCcc
Q 001310          319 FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1103)
Q Consensus       319 ~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  398 (1103)
                      -+.+|..+...|..|.++|..+.|-++.. .|++|+.|..|++|++..++.-..                 ..+.|..+.
T Consensus       160 ~~~lpS~~~~~ld~h~gev~~v~~l~~sd-tlatgg~Dr~Ik~W~v~~~k~~~~-----------------~tLaGs~g~  221 (459)
T KOG0288|consen  160 EDTLPSRALFVLDAHEGEVHDVEFLRNSD-TLATGGSDRIIKLWNVLGEKSELI-----------------STLAGSLGN  221 (459)
T ss_pred             hcccchhhhhhhhccccccceeEEccCcc-hhhhcchhhhhhhhhcccchhhhh-----------------hhhhccCCC
Confidence            36678999999999999999999999966 489999999999999987762221                 127788899


Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      |+++.|.++++++++++.|+.+++|++...+...   +|.||++.|+++.|.....  .+++|+.|.+|++||+..+.|.
T Consensus       222 it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C~  296 (459)
T KOG0288|consen  222 ITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYCS  296 (459)
T ss_pred             cceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhee
Confidence            9999999999999999999999999999876554   7889999999999998776  5999999999999999999988


Q ss_pred             EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      .++- ....+.+|+..    ...+++|-.|+.|++||.++.........++ .|+++..+++|..+.+++.    +..+.
T Consensus       297 kt~l-~~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl~  366 (459)
T KOG0288|consen  297 KTVL-PGSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTLK  366 (459)
T ss_pred             cccc-ccccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCcee
Confidence            7764 33344555542    3578999999999999999999888888776 9999999999999999976    55699


Q ss_pred             EEeCCCCeeEEEEeccccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001310          559 EWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l  637 (1103)
                      +.|+++.+....+...... ....+.+.|+|++.++++||.||.|+||++.++++...+......+.|.+++|+|.|..+
T Consensus       367 viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L  446 (459)
T KOG0288|consen  367 VIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL  446 (459)
T ss_pred             eeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence            9999999988887654321 234888999999999999999999999999999999999877665579999999999999


Q ss_pred             EEEECCCeEEEE
Q 001310          638 AVIANENRIKIL  649 (1103)
Q Consensus       638 ~~~~~dg~i~iw  649 (1103)
                      ++++.++.+.+|
T Consensus       447 lsadk~~~v~lW  458 (459)
T KOG0288|consen  447 LSADKQKAVTLW  458 (459)
T ss_pred             hcccCCcceEec
Confidence            999999999998

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.97  E-value=1.8e-28  Score=235.12  Aligned_cols=316  Identities=17%  Similarity=0.212  Sum_probs=243.9

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCee-eeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      ......|..|++++.+.+|||||. ++|+|+.|..|+|.|++..-.. ...++..-+.....+.+.  .+-.|...|+++
T Consensus       102 ~yEt~ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIR--TlYDH~devn~l  178 (430)
T KOG0640|consen  102 EYETKYLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIR--TLYDHVDEVNDL  178 (430)
T ss_pred             ccceEEEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEe--ehhhccCcccce
Confidence            344567889999999999999998 8999999999999999721000 000000000001111122  377899999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  481 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  481 (1103)
                      .|+|-...|++|+.|++|+++|+......+....+ ....+|.++.|.|.|.  +|+.|....++++||+++-++...- 
T Consensus       179 ~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~Qcfvsan  255 (430)
T KOG0640|consen  179 DFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSAN  255 (430)
T ss_pred             eecchhheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecC
Confidence            99999999999999999999999765433333222 3456899999999999  8888998899999999998886543 


Q ss_pred             --ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-CC-CccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          482 --EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-AP-GLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       482 --~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                        ..|.+.|+++.++  +.+.+.++++.||.|++||--+++++.++. .| +..|.+..|+.+|+++++.+.    +..+
T Consensus       256 Pd~qht~ai~~V~Ys--~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~v  329 (430)
T KOG0640|consen  256 PDDQHTGAITQVRYS--STGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTV  329 (430)
T ss_pred             cccccccceeEEEec--CCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----ccee
Confidence              4689999999885  467899999999999999988888877654 33 347999999999999999875    6779


Q ss_pred             EEEeCCCCeeEEEEecccccC--CceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310          558 VEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1103)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g  634 (1103)
                      ++|.+.+++.+..+.|....+  ..-+...|+....+++.-. ..+.+.-||.+++..+..+.. ++...+..+.-||.+
T Consensus       330 kLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~sl-gHn~a~R~i~HSP~~  408 (430)
T KOG0640|consen  330 KLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSL-GHNGAVRWIVHSPVE  408 (430)
T ss_pred             eeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhccc-CCCCCceEEEeCCCC
Confidence            999999999999998763111  1223345777777777644 457899999999887776654 344678999999999


Q ss_pred             CEEEEEECCCeEEEEEcC
Q 001310          635 TLLAVIANENRIKILETP  652 (1103)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~  652 (1103)
                      .-+++++.|...++|--.
T Consensus       409 p~FmTcsdD~raRFWyrr  426 (430)
T KOG0640|consen  409 PAFMTCSDDFRARFWYRR  426 (430)
T ss_pred             Cceeeecccceeeeeeec
Confidence            999999999999999643

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.97  E-value=1.1e-27  Score=294.09  Aligned_cols=323  Identities=14%  Similarity=0.173  Sum_probs=247.9

Q ss_pred             CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC----Ccc
Q 001310          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDA  431 (1103)
Q Consensus       356 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~----~~~  431 (1103)
                      +|.+++|+..+-......              +..-+..|.+.|.+++|+|+|++||+|+.|+.|+||+....    ...
T Consensus       457 ~gl~~~~~~~~~~~~~~~--------------~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~  522 (793)
T PLN00181        457 EGLCKYLSFSKLRVKADL--------------KQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI  522 (793)
T ss_pred             hhhhhhhcccceEEEEee--------------ccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence            577888887764433211              11114469999999999999999999999999999998642    111


Q ss_pred             c-cceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCe
Q 001310          432 R-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK  510 (1103)
Q Consensus       432 ~-~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  510 (1103)
                      . ....+. +...|.+++|++.... +|++++.||+|++||+.+++.+..+.+|.+.|++++|++. ++.+|++|+.||+
T Consensus       523 ~~~~~~~~-~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~  599 (793)
T PLN00181        523 HYPVVELA-SRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS  599 (793)
T ss_pred             ccceEEec-ccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence            1 111233 3467999999886433 7999999999999999999999999999999999999753 5679999999999


Q ss_pred             EEEEEcCCCCeeEEecCCCccEEEEEEc-cCCCEEEEEecCCCCceeEEEEeCCCCe-eEEEEecccccCCceEEEEEcC
Q 001310          511 IKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       511 i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      |++||+.++.....+..+ ..+.++.|+ ++|.++++++.    ++.|++||+++++ .+..+.+|.   ..|.++.|. 
T Consensus       600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~---~~V~~v~f~-  670 (793)
T PLN00181        600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHS---KTVSYVRFV-  670 (793)
T ss_pred             EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCC---CCEEEEEEe-
Confidence            999999988877766644 578899995 57999999875    6679999998765 456677776   889999997 


Q ss_pred             CCCEEEEEeCCCcEEEEECCCC------eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccc
Q 001310          589 AKDQILAAGDDHVIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       589 ~~~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1103)
                      ++..+++++.|++|++||+..+      ..+..+..|.  ..+..++|+|++++|++|+.|+.|.+|+......+.....
T Consensus       671 ~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~  748 (793)
T PLN00181        671 DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKF  748 (793)
T ss_pred             CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEec
Confidence            6789999999999999999743      4566776653  4578999999999999999999999999765533221110


Q ss_pred             cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEE
Q 001310          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  742 (1103)
Q Consensus       663 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  742 (1103)
                      ...                               +           .+             ..  .....+...|.+++|
T Consensus       749 ~~~-------------------------------~-----------~~-------------~~--~~~~~~~~~V~~v~w  771 (793)
T PLN00181        749 KTI-------------------------------D-----------PV-------------SG--LEVDDASQFISSVCW  771 (793)
T ss_pred             ccC-------------------------------C-----------cc-------------cc--cccCCCCcEEEEEEE
Confidence            000                               0           00             00  000124567999999


Q ss_pred             ecCCcEEEEeecCceEEEeec
Q 001310          743 NNGGQAIFALASNGVHLMWRW  763 (1103)
Q Consensus       743 s~~g~~l~~~~~dg~i~vw~~  763 (1103)
                      ++++..+++++.+|.|++|++
T Consensus       772 s~~~~~lva~~~dG~I~i~~~  792 (793)
T PLN00181        772 RGQSSTLVAANSTGNIKILEM  792 (793)
T ss_pred             cCCCCeEEEecCCCcEEEEec
Confidence            999999999999999999985

>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]

Probab=99.97  E-value=2.3e-29  Score=242.21  Aligned_cols=289  Identities=16%  Similarity=0.206  Sum_probs=250.6

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcccc-----ceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ-----QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~-----~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~  468 (1103)
                      |....+.|..|||||+||++|+.||.|.+||..+|+..+.     ...+--+..+|.|+.||.|..  .+++|+.||.|+
T Consensus       211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsE--MlAsGsqDGkIK  288 (508)
T KOG0275|consen  211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSE--MLASGSQDGKIK  288 (508)
T ss_pred             ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHH--HhhccCcCCcEE
Confidence            4566788999999999999999999999999999875331     223445778999999999999  899999999999


Q ss_pred             EEeCCCCceeEEee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          469 VWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       469 iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      ||.+.+|.|++.|. .|...|+++.|+  .|+..+++++.|.++++.-+.+++....+.+|..-|+...|++||.+++++
T Consensus       289 vWri~tG~ClRrFdrAHtkGvt~l~FS--rD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisa  366 (508)
T KOG0275|consen  289 VWRIETGQCLRRFDRAHTKGVTCLSFS--RDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISA  366 (508)
T ss_pred             EEEEecchHHHHhhhhhccCeeEEEEc--cCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEe
Confidence            99999999999996 899999999995  567789999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEEcCC-CCCCCC
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPEN  625 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v  625 (1103)
                      +.    +++|++|+..+.+++.+|+... .+.+|+.+-.-|. ..+++++...++|+|.++. |+.++.+... ......
T Consensus       367 Ss----DgtvkvW~~KtteC~~Tfk~~~-~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVrsfsSGkREgGdF  440 (508)
T KOG0275|consen  367 SS----DGTVKVWHGKTTECLSTFKPLG-TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVRSFSSGKREGGDF  440 (508)
T ss_pred             cC----CccEEEecCcchhhhhhccCCC-CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEeeeccCCccCCce
Confidence            86    6679999999999999988654 3467888877765 4678888899999999985 6777777543 223346


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec
Q 001310          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1103)
                      .+++.+|.|.++.+.+.|+.++.|...++..-..+..|...+..++-.                      |..+.+++-+
T Consensus       441 i~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HH----------------------PHqNllAsYs  498 (508)
T KOG0275|consen  441 INAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHH----------------------PHQNLLASYS  498 (508)
T ss_pred             EEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccC----------------------cccchhhhhc
Confidence            788899999999999999999999999999999999888888777766                      6778899999


Q ss_pred             ccccccccc
Q 001310          706 AENKSEVEK  714 (1103)
Q Consensus       706 ~d~~i~~w~  714 (1103)
                      .||.+++|.
T Consensus       499 EDgllKLWk  507 (508)
T KOG0275|consen  499 EDGLLKLWK  507 (508)
T ss_pred             ccchhhhcC
Confidence            999999996

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=2.4e-28  Score=230.05  Aligned_cols=287  Identities=10%  Similarity=0.098  Sum_probs=238.6

Q ss_pred             ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      .|+||..+++.+.|+.+|. ||.+++.|.++.||=..+|+++.+                   +.||++.|+|++.+.+.
T Consensus         5 ~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlGt-------------------y~GHtGavW~~Did~~s   64 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLGT-------------------YDGHTGAVWCCDIDWDS   64 (327)
T ss_pred             ccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceeee-------------------ecCCCceEEEEEecCCc
Confidence            4689999999999999999 899999999999999999999987                   88999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-----CCCceEEEeCC-------CCc
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAV-------TGS  476 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~-------~~~  476 (1103)
                      ++|++|+.|.++++||+++|+++.   .+ ....+|..+.|+++|.  +++.+.     ..+.|.++|++       ..+
T Consensus        65 ~~liTGSAD~t~kLWDv~tGk~la---~~-k~~~~Vk~~~F~~~gn--~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~e  138 (327)
T KOG0643|consen   65 KHLITGSADQTAKLWDVETGKQLA---TW-KTNSPVKRVDFSFGGN--LILASTDKQMGYTCFVSVFDIRDDSSDIDSEE  138 (327)
T ss_pred             ceeeeccccceeEEEEcCCCcEEE---Ee-ecCCeeEEEeeccCCc--EEEEEehhhcCcceEEEEEEccCChhhhcccC
Confidence            999999999999999999998765   33 3556899999999998  333332     33579999987       455


Q ss_pred             eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1103)
                      +...+..+...++.+.|.+  -+++|++|..||.|.+||++++.... .-..|...|+.+.+++|..++++++.    +.
T Consensus       139 p~~kI~t~~skit~a~Wg~--l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----Dt  212 (327)
T KOG0643|consen  139 PYLKIPTPDSKITSALWGP--LGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----DT  212 (327)
T ss_pred             ceEEecCCccceeeeeecc--cCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----Cc
Confidence            6788888889999999966  45799999999999999999986655 44778889999999999999999986    55


Q ss_pred             eEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc--EE------------EEECCCCeeEEEEcCCCC
Q 001310          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV--IK------------IWDMNKVQLLTTIDAGGG  621 (1103)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~------------iwd~~~~~~~~~~~~~~~  621 (1103)
                      +-.+||..+-+.++++....    +|++.+++|...+++.|+.-..  |.            +|++-..+.+..+.+|  
T Consensus       213 takl~D~~tl~v~Kty~te~----PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGH--  286 (327)
T KOG0643|consen  213 TAKLVDVRTLEVLKTYTTER----PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGH--  286 (327)
T ss_pred             cceeeeccceeeEEEeeecc----cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccc--
Confidence            68999999999999998744    9999999999888888663221  21            2222222334445544  


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          622 LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      ..+|++++|+|+|+..++|+.||.|++.-.+.
T Consensus       287 FGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  287 FGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             ccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            56899999999999999999999999986553

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.96  E-value=5.1e-28  Score=272.18  Aligned_cols=307  Identities=19%  Similarity=0.247  Sum_probs=248.6

Q ss_pred             cCCcCceEEEecCCCceEEEEEc--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~  409 (1103)
                      .+...|..++.+|||. .+|+|+  .|+.+.||+.+.=-.-    .+-++..   .+-....+..|.+.|.|+.|||||+
T Consensus        11 H~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~~----~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~   82 (942)
T KOG0973|consen   11 HNEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLDE----KEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGS   82 (942)
T ss_pred             cCCeeEEEEEecCCce-eEecCCccccccceeeccccccch----hhhhhcc---cchhheeeccccCceeEEEECCCCC
Confidence            3456789999999998 589999  7999999997531100    0001110   1111223667999999999999999


Q ss_pred             EEEEEeCCCeEEEEEecC---C------------CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          410 LLGVAYSKHIVQLYAYHG---G------------SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~---~------------~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      +||+|+.|+.|.||....   +            +..+....+.+|...|..++|+|++.  +|++++.|++|.|||..+
T Consensus        83 ~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~t  160 (942)
T KOG0973|consen   83 YLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKT  160 (942)
T ss_pred             eEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEcccc
Confidence            999999999999999883   1            11234557889999999999999999  899999999999999999


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC------ccEEEEEEccCCCEEEEEe
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG------LGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------~~i~~~~~s~dg~~l~~~~  548 (1103)
                      .+.+..+++|.+.|..+.|.|  -|+++++-+.|++|++|+..+-.....+..+-      ..+..+.|||||.+|++..
T Consensus       161 F~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~n  238 (942)
T KOG0973|consen  161 FELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPN  238 (942)
T ss_pred             ceeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchh
Confidence            999999999999999999955  67899999999999999977655555444332      2578899999999999987


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC-------------CC----EEEEEeCCCcEEEEECCCCe
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-------------KD----QILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-------------~~----~l~~~~~dg~i~iwd~~~~~  611 (1103)
                      .-..+...+.|.+-.+.+.-..+.||.   .++.+++|+|.             .+    .+++|+.|++|-||.....+
T Consensus       239 A~n~~~~~~~IieR~tWk~~~~LvGH~---~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~R  315 (942)
T KOG0973|consen  239 AVNGGKSTIAIIERGTWKVDKDLVGHS---APVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPR  315 (942)
T ss_pred             hccCCcceeEEEecCCceeeeeeecCC---CceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCC
Confidence            766677889999998888889999999   89999999972             11    46679999999999998888


Q ss_pred             eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      ++.....-.. ..|..++|+|||..|++++.||+|.++.++..
T Consensus       316 Pl~vi~~lf~-~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  316 PLFVIHNLFN-KSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             chhhhhhhhc-CceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence            7765543322 46899999999999999999999999998754

>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]

Probab=99.96  E-value=1.1e-26  Score=243.02  Aligned_cols=638  Identities=16%  Similarity=0.164  Sum_probs=358.3

Q ss_pred             eeccCCCccEEEEEECC-CCCEEEEEeCCCeEEEEEecCCCc--c-ccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310          390 ALVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD--A-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1103)
Q Consensus       390 ~~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~~~~--~-~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~  465 (1103)
                      .++.+|+..|+.+.||| +..+||+|+.|..|+||.+..|-.  + .....+.+..-.|.++.|+|.... +++ .+..|
T Consensus        73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-il~-s~a~g  150 (1012)
T KOG1445|consen   73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-ILA-SGAHG  150 (1012)
T ss_pred             ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-eEE-eccCc
Confidence            35889999999999999 777999999999999999985432  1 112233344457899999997774 444 44578


Q ss_pred             ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCc-cEEEEEEccCCCE
Q 001310          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGL-GCTRMAYSANGRR  543 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~-~i~~~~~s~dg~~  543 (1103)
                      +++|||+.+++.+..+.+|...|.++.|  +.||.+|++.+.|..|+|||.+.... ......|++ .-..+.|..+-..
T Consensus       151 ~v~i~D~stqk~~~el~~h~d~vQSa~W--seDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~r  228 (1012)
T KOG1445|consen  151 SVYITDISTQKTAVELSGHTDKVQSADW--SEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWER  228 (1012)
T ss_pred             eEEEEEcccCceeecccCCchhhhcccc--ccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhh
Confidence            9999999999999999999999999998  66899999999999999999886543 344455544 3345677766667


Q ss_pred             EEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEE--EcCC
Q 001310          544 LFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTT--IDAG  619 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~--~~~~  619 (1103)
                      |++.+.+......+++||.+. +..+.++.-..  ...+.---|.||.+.++. |-.+.++..+.+...++...  +...
T Consensus       229 lisTGF~~~R~reV~~~Dtr~f~~p~~tleld~--stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qPyLs~v~~~t  306 (1012)
T KOG1445|consen  229 LISTGFTTKRIREVRAYDTRKFGAPVHTLELDS--STGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQPYLSHVFELT  306 (1012)
T ss_pred             hhhcccchhhheeeeeeeccccCCcceeEEeec--ccceEeeeecCCCceEEEecCCcceEEEEEecCCCcchhhhhhhc
Confidence            777776555566799999875 33444444322  234555568898877665 44678888888876554311  1111


Q ss_pred             CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEe--------------------------------ccccccce
Q 001310          620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA--------------------------------AGVLSDNL  667 (1103)
Q Consensus       620 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~--------------------------------~~~~~~~i  667 (1103)
                      .. ......+.-|...+-+..+.  ..+++.+.....+..                                +.+....+
T Consensus       307 le-~~~~GA~lvpkral~VM~~E--V~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~~~ageWlnG~Nq~v  383 (1012)
T KOG1445|consen  307 LE-EQTLGATLVPKRALHVMDGE--VDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPGCTAGEWLNGTNQVV  383 (1012)
T ss_pred             ch-hhhccceecchhhhhhcchh--hhhheecccCceeecccccchhhhhhhhhhhCccccCCccCcCccceecCccccc
Confidence            00 01122333332221111111  112222221111100                                01111111


Q ss_pred             eeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc-------------ccCCccceeeeccCcccc
Q 001310          668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL-------------FARPSECQSLLLPSKVKA  734 (1103)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~-------------~~~~~~~~~~~~~~~~~~  734 (1103)
                      ..+.+.|........+        +..-|....--+++.   +.+.-..             ...+.....   +.....
T Consensus       384 qKvSl~Pa~r~h~~~p--------p~~~P~p~~a~t~sf---~~v~~ppaaP~~~~n~~~~~~~~Pd~~~q---paV~~~  449 (1012)
T KOG1445|consen  384 QKVSLAPAQRSHSPPP--------PEPVPTPKVAQTPSF---VPVPTPPAAPRPMSNNNSSSNNVPDVQEQ---PAVPKK  449 (1012)
T ss_pred             cccccCchhccCCCCC--------CCCCCCcccccCCCC---ccccCCCCCCCccccccccccCCCccccC---CCcCcc
Confidence            1122211111100000        000010000001110   0000000             000000000   000000


Q ss_pred             ccEEEEEEec----CC---------------cEEEEeecCc----------------eEEEeecCCCcccc----c--cc
Q 001310          735 NKISRLTYNN----GG---------------QAIFALASNG----------------VHLMWRWPRNDLTL----S--TE  773 (1103)
Q Consensus       735 ~~i~~~~~s~----~g---------------~~l~~~~~dg----------------~i~vw~~~~~~~~~----~--~~  773 (1103)
                      ..++.+..-|    .|               ..+-+.+...                +..+..-...+..+    .  +.
T Consensus       450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~  529 (1012)
T KOG1445|consen  450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGK  529 (1012)
T ss_pred             hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCC
Confidence            1111111110    00               0000000000                00000000000000    0  00


Q ss_pred             -ccc------c----------cCCeeecCCCCCceeec----cCCCCCCCCCeeEEEEecCCCEEEEE---cCCeEEEEE
Q 001310          774 -ATT------K----------VPPRLYQPRHGPQFMVN----DTTDSNSQEAVPCFALSKNDAYLFSA---SGGVISLYI  829 (1103)
Q Consensus       774 -~~~------~----------~~~~~~~~~~~~~~~~~----~~~~~~~~~~v~~l~~s~d~~~l~~~---~dg~i~iwd  829 (1103)
                       ..+      .          +.+.-|.-..|......    .+......-+-.+=-|..+.+++|+-   +.|.|.||+
T Consensus       530 ~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~e  609 (1012)
T KOG1445|consen  530 PISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYE  609 (1012)
T ss_pred             CccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEE
Confidence             000      0          00000111111100000    00000000011122244566666653   368999999


Q ss_pred             cCC-ceeeEE-ec--CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-------eeEEEeccCCCCEEEEEEccC-
Q 001310          830 VMT-FKTILT-IM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLVFSDA-  897 (1103)
Q Consensus       830 ~~~-~~~~~~-~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-------~~~~~l~~h~~~V~~l~~s~d-  897 (1103)
                      +.. |++... +.  .....|+.+.|.|.|...||+++.||.|++|.+..+       +.-..+.+|...|+++.|+|- 
T Consensus       610 l~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA  689 (1012)
T KOG1445|consen  610 LNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA  689 (1012)
T ss_pred             cCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh
Confidence            974 332221 11  134579999999999999999999999999998764       345678899999999999995 


Q ss_pred             CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCC
Q 001310          898 LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI  976 (1103)
Q Consensus       898 g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~  976 (1103)
                      ...|++++.|.+|++||+.+++..     ..+.+|..   .|..++|||||+.+|+ +.||+|++|+-++++.....-.+
T Consensus       690 advLa~asyd~Ti~lWDl~~~~~~-----~~l~gHtd---qIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~g  761 (1012)
T KOG1445|consen  690 ADVLAVASYDSTIELWDLANAKLY-----SRLVGHTD---QIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKG  761 (1012)
T ss_pred             hhHhhhhhccceeeeeehhhhhhh-----heeccCcC---ceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCC
Confidence            468999999999999999986632     34566665   8999999999999998 79999999999887765321222


Q ss_pred             C-CcCeEEEEEccCCCEEEEEecC----CcEEEEeCCCceeE--EeeccccccCCCCCCCceeeEeeccCCceeeEEEEE
Q 001310          977 S-SVPISQATFSCDCRMVFTSFVD----GTLSIHEASNLEVQ--CRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAA 1049 (1103)
Q Consensus       977 h-~~~v~~l~fs~dg~~l~t~~~d----g~v~vWd~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 1049 (1103)
                      . ..+-..+.|.-||+++++.+-|    ..|.+||.++....  .... .+..+                   ..+.-.+
T Consensus       762 pvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~-lDvap-------------------s~LvP~Y  821 (1012)
T KOG1445|consen  762 PVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQV-LDVAP-------------------SPLVPHY  821 (1012)
T ss_pred             CccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeee-ecccC-------------------ccccccc
Confidence            1 3444568899999999888766    45889998875532  1111 00000                   0122356


Q ss_pred             CCCCCcEEEEEecCCcEEEEccCCCCCCC
Q 001310         1050 HPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1078 (1103)
Q Consensus      1050 ~p~~~~~l~~~~~dg~v~vw~~~~~~~~w 1078 (1103)
                      ++|.+.++++|-.|..|..|++.....-.
T Consensus       822 D~Ds~~lfltGKGD~~v~~yEv~~esPy~  850 (1012)
T KOG1445|consen  822 DYDSNVLFLTGKGDRFVNMYEVIYESPYL  850 (1012)
T ss_pred             cCCCceEEEecCCCceEEEEEecCCCcee
Confidence            67777899999999999999986555543

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.96  E-value=1.3e-26  Score=225.28  Aligned_cols=287  Identities=16%  Similarity=0.240  Sum_probs=237.6

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~  409 (1103)
                      +..-.+.|.++.|+++|. ++++++.|.+++|||..+|+++++                   ...+...|..+.|.....
T Consensus        10 f~~~~~~i~sl~fs~~G~-~litss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~   69 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGL-LLITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSN   69 (311)
T ss_pred             cccCCCceeEEEecCCCC-EEEEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCc
Confidence            344567999999999999 577788999999999999998876                   445677888999988877


Q ss_pred             EEEEEeC--CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310          410 LLGVAYS--KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       410 ~las~~~--d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      .++.++.  |.+|+.-++.+.+.++   -+.||...|+.++.+|-+.  .+++++.|++|++||++..++...+.....+
T Consensus        70 ~~i~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p  144 (311)
T KOG1446|consen   70 TVIHSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP  144 (311)
T ss_pred             eEEEccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCc
Confidence            7777766  7899999999998777   7899999999999999998  8999999999999999999988877655555


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEec---CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYD---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      +.  +|  ++.|-++|++...+.|++||++.-.  +..++.   ......+.+.|||||++++.+..    .+.+++.|.
T Consensus       145 i~--Af--Dp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDA  216 (311)
T KOG1446|consen  145 IA--AF--DPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDA  216 (311)
T ss_pred             ce--eE--CCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEc
Confidence            54  44  5577888888888899999998642  233333   33557899999999999999875    567999999


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      -+|.....+.++......-...+|+||++++++|+.||+|.+|++++|..+..+... ...++.++.|+|.-..+++++ 
T Consensus       217 f~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~-  294 (311)
T KOG1446|consen  217 FDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS-  294 (311)
T ss_pred             cCCcEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC-
Confidence            999999999988744444467889999999999999999999999999999999875 345688999999876666655 


Q ss_pred             CCeEEEEEcC
Q 001310          643 ENRIKILETP  652 (1103)
Q Consensus       643 dg~i~iw~~~  652 (1103)
                       ..+.+|-..
T Consensus       295 -s~l~fw~p~  303 (311)
T KOG1446|consen  295 -SNLVFWLPD  303 (311)
T ss_pred             -ceEEEEecc
Confidence             467788544

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.96  E-value=8.3e-28  Score=237.78  Aligned_cols=282  Identities=20%  Similarity=0.366  Sum_probs=234.4

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC---C
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---G  408 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g  408 (1103)
                      -|.+.|.++...  ++ .+.+|++||.++|||.. |+..+.                   +.||.++|.+++|--.   .
T Consensus       103 ~hdDWVSsv~~~--~~-~IltgsYDg~~riWd~~-Gk~~~~-------------------~~Ght~~ik~v~~v~~n~~~  159 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SK-WILTGSYDGTSRIWDLK-GKSIKT-------------------IVGHTGPIKSVAWVIKNSSS  159 (423)
T ss_pred             cchhhhhhhccc--Cc-eEEEeecCCeeEEEecC-CceEEE-------------------EecCCcceeeeEEEecCCcc
Confidence            577899999999  44 58999999999999965 555544                   7799999998888643   3


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccc-cceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC--------------
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--------------  473 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--------------  473 (1103)
                      ..+++++.|.++++|.++.++... ......||...|-+++..++|.  .+++|+.|.+|.||+..              
T Consensus       160 ~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~~~~E~~s~~r  237 (423)
T KOG0313|consen  160 CLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEEDELESSSNRR  237 (423)
T ss_pred             ceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCccccccccchhh
Confidence            369999999999999998876432 2223459999999999999999  89999999999999932              


Q ss_pred             -----------CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC
Q 001310          474 -----------TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR  542 (1103)
Q Consensus       474 -----------~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~  542 (1103)
                                 ++.++-++.||..+|.++.|.+   ...+++++.|.+|+.||+.+++....+.. ...+.++..+|..+
T Consensus       238 rk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~-~ksl~~i~~~~~~~  313 (423)
T KOG0313|consen  238 RKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTT-NKSLNCISYSPLSK  313 (423)
T ss_pred             hhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeec-CcceeEeecccccc
Confidence                       1234567889999999999965   35899999999999999999888776654 45789999999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCe---eEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe-eEEEEc
Q 001310          543 RLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ-LLTTID  617 (1103)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~-~~~~~~  617 (1103)
                      +|++++.    +..|++||.+++.   ....+.+|.   +.|.++.|+|... +|++|+.|+++++||+++.. ++..+.
T Consensus       314 Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~---nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~  386 (423)
T KOG0313|consen  314 LLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHK---NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIA  386 (423)
T ss_pred             eeeecCC----CCceeecCCCCCCCceeEEeeecch---hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeec
Confidence            9999986    6679999999764   346677877   8999999999865 46679999999999999877 888888


Q ss_pred             CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       618 ~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      .|.  ..|.++.|+. +..+++|+.|++|+|+...
T Consensus       387 ~h~--DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  387 GHN--DKVLSVDWNE-GGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             cCC--ceEEEEeccC-CceEEeccCcceEEEeccc
Confidence            774  4589999985 6799999999999998644

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.96  E-value=2.3e-27  Score=222.79  Aligned_cols=279  Identities=16%  Similarity=0.246  Sum_probs=240.4

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-  406 (1103)
                      +.+.+|...|..|+|+.+|. -||+|+.|+++.+|+++.......                 ....+|.+.|-.++|+| 
T Consensus        14 r~~~~~~~~v~Sv~wn~~g~-~lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~   75 (313)
T KOG1407|consen   14 RELQGHVQKVHSVAWNCDGT-KLASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPK   75 (313)
T ss_pred             HHhhhhhhcceEEEEcccCc-eeeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCC
Confidence            56789999999999999998 499999999999999998854433                 12678999999999998 


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      ...++++++.|.+|++||+..+++....   ... +.=..+.|+|+|.  +++.++.|..|.+.|.++.+.....+ ...
T Consensus        76 ~~d~~atas~dk~ir~wd~r~~k~~~~i---~~~-~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~  148 (313)
T KOG1407|consen   76 HPDLFATASGDKTIRIWDIRSGKCTARI---ETK-GENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKF  148 (313)
T ss_pred             CCcceEEecCCceEEEEEeccCcEEEEe---ecc-CcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccc
Confidence            6789999999999999999999876633   222 2334678999999  79999999999999988887766554 445


Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1103)
                      .+..++|+.  ++.+++....-|+|.|..+...+.+..+..|...+.|+.|+|+|+++++|+.    +..+.+||+..--
T Consensus       149 e~ne~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELi  222 (313)
T KOG1407|consen  149 EVNEISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELI  222 (313)
T ss_pred             eeeeeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhh
Confidence            577788873  3456777777899999999999999999999999999999999999999987    6679999999999


Q ss_pred             eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d  643 (1103)
                      +++.+..+.   -+|+.+.|+.+|++|++||+|..|-|=++++|..+..++..+   +...|+|+|...+||.+.+|
T Consensus       223 C~R~isRld---wpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  223 CERCISRLD---WPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             hheeecccc---CceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence            999999888   999999999999999999999999999999999999998764   46899999999999988775

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.96  E-value=5e-28  Score=265.45  Aligned_cols=310  Identities=15%  Similarity=0.186  Sum_probs=225.3

Q ss_pred             ceeEecc-cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          325 TVAQTLI-EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       325 ~~~~~l~-~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ...|.+. .|.+.||++.||+||+ |||+|+.|+.|+||.+...+....   ..-+.+.....+.     . .+.+..+.
T Consensus       257 ~~~Qe~~~ah~gaIw~mKFS~DGK-yLAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~~~-----~-~s~~~p~~  326 (712)
T KOG0283|consen  257 TVVQEISNAHKGAIWAMKFSHDGK-YLASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFEYN-----A-NSQIEPST  326 (712)
T ss_pred             EEeeccccccCCcEEEEEeCCCCc-eeeecCCCceEEEEEEeccchhcc---cccccchhhhhhh-----h-ccccCccc
Confidence            4456666 9999999999999999 699999999999999977544211   0000000000000     0 00011111


Q ss_pred             ECC---CCC--EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          404 WSP---DGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       404 ~sp---dg~--~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      -++   .++  ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++   +|++++.|++||+|++...+|+
T Consensus       327 s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL  403 (712)
T KOG0283|consen  327 SSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECL  403 (712)
T ss_pred             cccccccccccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCccee
Confidence            111   011  11112222222222211111123455788999999999999876   6999999999999999999999


Q ss_pred             EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      ..|. |.+.|+|++|+|. |.+++++|+-||.+|||++...+...-.. ...-|++++|.|||++.++|+.    +|.++
T Consensus       404 ~~F~-HndfVTcVaFnPv-DDryFiSGSLD~KvRiWsI~d~~Vv~W~D-l~~lITAvcy~PdGk~avIGt~----~G~C~  476 (712)
T KOG0283|consen  404 KVFS-HNDFVTCVAFNPV-DDRYFISGSLDGKVRLWSISDKKVVDWND-LRDLITAVCYSPDGKGAVIGTF----NGYCR  476 (712)
T ss_pred             eEEe-cCCeeEEEEeccc-CCCcEeecccccceEEeecCcCeeEeehh-hhhhheeEEeccCCceEEEEEe----ccEEE
Confidence            9996 9999999999997 55899999999999999998755544433 3478999999999999999987    66699


Q ss_pred             EEeCCCCeeEEEEeccc-----ccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          559 EWNESEGAIKRTYQGLQ-----LQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~-----~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      +|+....+....+.-+.     .....|+.+.|.|.. ..+++.+.|..|||+|.++..++..+.+......-....|+.
T Consensus       477 fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~  556 (712)
T KOG0283|consen  477 FYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSS  556 (712)
T ss_pred             EEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEcc
Confidence            99998877765544322     112379999999754 358889999999999999999998888766555567889999


Q ss_pred             CCCEEEEEECCCeEEEEEcCCC
Q 001310          633 NGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       633 ~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      ||++|+++++|..|++|+....
T Consensus       557 Dgk~IVs~seDs~VYiW~~~~~  578 (712)
T KOG0283|consen  557 DGKHIVSASEDSWVYIWKNDSF  578 (712)
T ss_pred             CCCEEEEeecCceEEEEeCCCC
Confidence            9999999999999999998644

>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]

Probab=99.96  E-value=8.5e-29  Score=230.34  Aligned_cols=287  Identities=14%  Similarity=0.182  Sum_probs=253.8

Q ss_pred             ccCCCccEEEEEECC---CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310          392 VRDPGVSVNRVVWSP---DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1103)
Q Consensus       392 ~~~h~~~V~~~~~sp---dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~  468 (1103)
                      ..||+.+|..++|||   +|-+|++++.|+.=.+-+-++|.-+.   ++.||.+.|+......+..  ..++++.|-+.+
T Consensus        10 c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdwig---tfeghkgavw~~~l~~na~--~aasaaadftak   84 (334)
T KOG0278|consen   10 CHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDWIG---TFEGHKGAVWSATLNKNAT--RAASAAADFTAK   84 (334)
T ss_pred             EcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCcEE---eeeccCcceeeeecCchhh--hhhhhcccchhh
Confidence            668999999999996   89999999999988777777876665   7899999999999988877  689999999999


Q ss_pred             EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEE
Q 001310          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      |||.-+|..+++|. |...|.+++|  +.|..+|++|+.+..+|++|++..+. ...+.++.+.|..+.|....+.+++.
T Consensus        85 vw~a~tgdelhsf~-hkhivk~~af--~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSS  161 (334)
T KOG0278|consen   85 VWDAVTGDELHSFE-HKHIVKAVAF--SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSS  161 (334)
T ss_pred             hhhhhhhhhhhhhh-hhheeeeEEe--cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEee
Confidence            99999999999996 8899999999  45778999999999999999987654 45788899999999999999999987


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      +.    ++.|++||.+++..++.+...    .+|+++..+++|++|.+ ...+.|.+||..+...++.+..+..   |.+
T Consensus       162 ad----d~tVRLWD~rTgt~v~sL~~~----s~VtSlEvs~dG~ilTi-a~gssV~Fwdaksf~~lKs~k~P~n---V~S  229 (334)
T KOG0278|consen  162 AD----DKTVRLWDHRTGTEVQSLEFN----SPVTSLEVSQDGRILTI-AYGSSVKFWDAKSFGLLKSYKMPCN---VES  229 (334)
T ss_pred             cc----CCceEEEEeccCcEEEEEecC----CCCcceeeccCCCEEEE-ecCceeEEeccccccceeeccCccc---ccc
Confidence            54    666999999999999999874    48999999999876544 4567899999999999999887643   789


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEec-cccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1103)
                      .+.+|+...+++|+.|..++.||..++..+... ++|..+|.|+.|+                      |||...++|+.
T Consensus       230 ASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFS----------------------PdGE~yAsGSE  287 (334)
T KOG0278|consen  230 ASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFS----------------------PDGELYASGSE  287 (334)
T ss_pred             ccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEEC----------------------CCCceeeccCC
Confidence            999999999999999999999999999998885 9999999999997                      78888999999


Q ss_pred             ccccccccccccCC
Q 001310          707 ENKSEVEKPLFARP  720 (1103)
Q Consensus       707 d~~i~~w~~~~~~~  720 (1103)
                      ||+|++|....++.
T Consensus       288 DGTirlWQt~~~~~  301 (334)
T KOG0278|consen  288 DGTIRLWQTTPGKT  301 (334)
T ss_pred             CceEEEEEecCCCc
Confidence            99999999775443

>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]

Probab=99.96  E-value=6.5e-27  Score=220.40  Aligned_cols=286  Identities=13%  Similarity=0.154  Sum_probs=239.3

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      .+.||+.+++.+.++.+|.+|.+|+.|.++.||-...|+.+.   ++.||++.|+|+..+-+.+  .+++|+.|.++++|
T Consensus         5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW   79 (327)
T ss_pred             ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence            488999999999999999999999999999999998888666   7899999999999999999  89999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-----CCeEEEEEcC-------CCCeeEEecCCCccEEEEEEc
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYD-------SLGARVDYDAPGLGCTRMAYS  538 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~-------~~~~~~~~~~~~~~i~~~~~s  538 (1103)
                      |+++|+++.+++ ...+|..+.|++  +|.+++....     .+.|.++|++       ..++...+..+...++.+-|+
T Consensus        80 Dv~tGk~la~~k-~~~~Vk~~~F~~--~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg  156 (327)
T KOG0643|consen   80 DVETGKQLATWK-TNSPVKRVDFSF--GGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG  156 (327)
T ss_pred             EcCCCcEEEEee-cCCeeEEEeecc--CCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence            999999999997 567899999965  4455555433     3569999987       344566777788899999999


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCee-EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310          539 ANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  617 (1103)
                      |-+++|++|..    ++.|.+||.++|.. +..-+.|.   ..|+.+.++++..++++++.|.+-++||+.+-+.++++.
T Consensus       157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~---~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~  229 (327)
T KOG0643|consen  157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHS---SKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT  229 (327)
T ss_pred             ccCCEEEEecC----CCcEEEEEcccCceeeechhhhc---cccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence            99999999976    56699999999854 44445555   799999999999999999999999999999999999987


Q ss_pred             CCCCCCCCceEEEecCCCEEEEEECCCeEEEEE--------------cCCCCeeEeccccccceeeeEEecCCceeeeec
Q 001310          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILE--------------TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  683 (1103)
Q Consensus       618 ~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~--------------~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  683 (1103)
                      ..   .++++.+++|....++.|+.....-+=-              +-..+.+...++|..+|++++++          
T Consensus       230 te---~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFGPINsvAfh----------  296 (327)
T KOG0643|consen  230 TE---RPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFGPINSVAFH----------  296 (327)
T ss_pred             ec---ccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccccCcceeEEC----------
Confidence            65   4589999999888887776543332221              11223456778999999999997          


Q ss_pred             cCCceEecCCCCCCCccceeecccccccccccc
Q 001310          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                                  |+|+..++|+.||.||+...+
T Consensus       297 ------------PdGksYsSGGEDG~VR~h~Fd  317 (327)
T KOG0643|consen  297 ------------PDGKSYSSGGEDGYVRLHHFD  317 (327)
T ss_pred             ------------CCCcccccCCCCceEEEEEec
Confidence                        789999999999999986544

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.96  E-value=6.3e-26  Score=207.71  Aligned_cols=309  Identities=17%  Similarity=0.208  Sum_probs=238.4

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeee-eeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFI-RNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      ..++.+|+.. ..|.+++|+|.|. +.|+|+...+.+|-....-..++. .+-     ..-.+...-..-+.|.+.|.|.
T Consensus        23 f~~i~~l~ds-qairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~hea-----~~~pp~v~~kr~khhkgsiyc~   95 (350)
T KOG0641|consen   23 FEAINILEDS-QAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHAHEA-----AKQPPSVLCKRNKHHKGSIYCT   95 (350)
T ss_pred             eEEEEEecch-hheeeEEecCCCc-eEEeccCCceEEEEccccccCccccccc-----ccCCCeEEeeeccccCccEEEE
Confidence            3566777765 4999999999998 789999999999876543221110 000     0000011111245689999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecC--CCccccceEeccccccEEEEEEecC---CCceEEEEEc-CCCceEEEeCCCCc
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG-DDKTIKVWDAVTGS  476 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~--~~~~~~~~~l~~h~~~v~~~~~s~d---~~~~~l~s~~-~d~~i~iwd~~~~~  476 (1103)
                      +|||+|.+||+|++|.+|++.-.+.  ........++.-|.+.|..++|-.+   +.. +|++++ .|..|++-|..+|+
T Consensus        96 ~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~  174 (350)
T KOG0641|consen   96 AWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQ  174 (350)
T ss_pred             EecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCC
Confidence            9999999999999999999876543  3334444567889999999999654   222 566655 57788888999999


Q ss_pred             eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC-------CCccEEEEEEccCCCEEEEEec
Q 001310          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      ..+.+.+|.+-|.++--   -++..+++|+.|.+|++||++-..+..++..       ....|.+++..|.|++|+++..
T Consensus       175 ~~~a~sghtghilalys---wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~  251 (350)
T KOG0641|consen  175 GFHALSGHTGHILALYS---WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA  251 (350)
T ss_pred             cceeecCCcccEEEEEE---ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC
Confidence            99999999999988742   2667999999999999999998877765532       2247899999999999999876


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCCCCCCC
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPEN  625 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v  625 (1103)
                          +....+||++.++.++.+..|.   ..|.++.|+|...++++++.|..|++-|+...    -.+.....|  ...+
T Consensus       252 ----dssc~lydirg~r~iq~f~phs---adir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~  322 (350)
T KOG0641|consen  252 ----DSSCMLYDIRGGRMIQRFHPHS---ADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKA  322 (350)
T ss_pred             ----CCceEEEEeeCCceeeeeCCCc---cceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCce
Confidence                5558899999999999999988   89999999999999999999999999998642    112222223  3457


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          626 PRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      ..+.|+|..--+++.+.|.+..+|.+.
T Consensus       323 i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  323 IQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             EEEEecCccceeeeccCcceEEEeccC
Confidence            789999998889999999999999764

>PTZ00421 coronin; Provisional

Probab=99.96  E-value=3.2e-26  Score=257.33  Aligned_cols=288  Identities=12%  Similarity=0.123  Sum_probs=224.8

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  411 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l  411 (1103)
                      |-..|....+++|+. .+++++.+..+..|+...|..+.      +.............+.+|.+.|.+++|+| ++++|
T Consensus        19 ~~~~i~~~~~~~d~~-~~~~~n~~~~a~~w~~~gg~~v~------~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~L   91 (493)
T PTZ00421         19 HFLNVTPSTALWDCS-NTIACNDRFIAVPWQQLGSTAVL------KHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKL   91 (493)
T ss_pred             ceeccccccccCCCC-CcEeECCceEEEEEecCCceEEe------eccccccCCCCCceEeCCCCCEEEEEEcCCCCCEE
Confidence            445777888899976 36777778888899877664321      11111111122334789999999999999 89999


Q ss_pred             EEEeCCCeEEEEEecCCCc----cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310          412 GVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      |+|+.|++|++||+.++..    ......+.+|...|.+++|+|++.. +|++++.|++|+|||+.+++.+..+.+|...
T Consensus        92 aSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~  170 (493)
T PTZ00421         92 FTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQ  170 (493)
T ss_pred             EEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCc
Confidence            9999999999999987532    1234468899999999999998644 7999999999999999999999999999999


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCcc-EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1103)
                      |.+++|++  ++.+|++++.|++|++||+++++....+..|... ...+.|.+++..+++++.++..++.|.+||+++..
T Consensus       171 V~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~  248 (493)
T PTZ00421        171 ITSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMA  248 (493)
T ss_pred             eEEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCC
Confidence            99999965  6789999999999999999998888787777654 45678999988888877665567889999998754


Q ss_pred             -eEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC
Q 001310          567 -IKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1103)
Q Consensus       567 -~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1103)
                       .+.....+.  ...+....|+++++.+++++ .|+.|++||+.+++.+....... ..++..++|.|.
T Consensus       249 ~p~~~~~~d~--~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk  314 (493)
T PTZ00421        249 SPYSTVDLDQ--SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK  314 (493)
T ss_pred             CceeEeccCC--CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence             333333222  24566678999999999887 59999999999998877665432 245788888885

>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]

Probab=99.96  E-value=2.8e-27  Score=226.99  Aligned_cols=306  Identities=13%  Similarity=0.198  Sum_probs=236.9

Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1103)
Q Consensus       622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1103)
                      ..++.+.+|+|||.++++|+.|..|+|+|++..-....   +..                                   +
T Consensus       112 K~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~---~~e-----------------------------------m  153 (430)
T KOG0640|consen  112 KSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSK---PKE-----------------------------------M  153 (430)
T ss_pred             ccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcc---hhh-----------------------------------h
Confidence            45688999999999999999999999999874311100   000                                   0


Q ss_pred             eeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCe
Q 001310          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1103)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  781 (1103)
                      ..+              .+....++....-.|..+|+.+.|.|....|++++.|+++++||+........        .+
T Consensus       154 ~~~--------------~~qa~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA--------~K  211 (430)
T KOG0640|consen  154 ISG--------------DTQARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRA--------FK  211 (430)
T ss_pred             ccC--------------CcccCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHH--------HH
Confidence            000              00000111111123889999999999999999999999999999876432100        00


Q ss_pred             eecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC-CeEEEEEcCCceeeEEec---CCCCCeeEEEEcCCCCC
Q 001310          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNN  857 (1103)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d-g~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~  857 (1103)
                      ++                ....+|.++.|.|.|.+|++|.| .++++||+++.++...-.   .|.+.|+++.+++ .++
T Consensus       212 ~~----------------qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~-t~~  274 (430)
T KOG0640|consen  212 VF----------------QDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSS-TGS  274 (430)
T ss_pred             Hh----------------hccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeEEEecC-Ccc
Confidence            10                25678999999999999999987 789999999998876643   4778999999999 899


Q ss_pred             EEEEEeCCCeEEEEEcCCceeEEEecc-CCC-CEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310          858 VIAIGMDDSTILIYNARSSEVISKLEG-HSK-RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1103)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~-~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1103)
                      +.++|+.||.|++||--+++++.++.. |.+ .|.+..|+.+|+++++.|.|..+++|++.++.......=....|... 
T Consensus       275 lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~-  353 (430)
T KOG0640|consen  275 LYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQK-  353 (430)
T ss_pred             EEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchh-
Confidence            999999999999999999999988864 654 78899999999999999999999999999987544222111112111 


Q ss_pred             CCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          936 APSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       936 ~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                        --+...|.....+++.-  ..+.+.-||.+++..+..+..+|++.+..+.-||.+..+.||+.|..+|+|--
T Consensus       354 --~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWyr  425 (430)
T KOG0640|consen  354 --HRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWYR  425 (430)
T ss_pred             --hhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCCceeeecccceeeeeee
Confidence              23456677778887773  45679999999999999889999999999999999999999999999999964

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.96  E-value=1e-26  Score=260.93  Aligned_cols=284  Identities=17%  Similarity=0.288  Sum_probs=249.0

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .|...+.+..|. ++  .+++|+.|++|++||..++..+..                  -+.||.+.|.+++|..-+.+|
T Consensus       206 ~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~g~V~~l~~~~~~~~l  264 (537)
T KOG0274|consen  206 TDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHFGGVWGLAFPSGGDKL  264 (537)
T ss_pred             cCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCCCCceeEEEecCCCEE
Confidence            367789999999 44  489999999999999999987754                  177999999999999889999


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  491 (1103)
                      ++|+.|.+++|||..+|++..   .+.+|.+.|.++...+.    .+++|+.|.+|++|++.++.++..+.+|.++|.++
T Consensus       265 vsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v  337 (537)
T KOG0274|consen  265 VSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCV  337 (537)
T ss_pred             EEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcceEEEeccccccEEEE
Confidence            999999999999999998877   78899999999987543    68899999999999999999999999999999999


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC-eeEEE
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG-AIKRT  570 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~  570 (1103)
                      ..+    +.++++|+.|++|++||+.+.++...+.+|...|.++.+.+. ..+++++.    +..|++||+.+. +++..
T Consensus       338 ~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~IkvWdl~~~~~c~~t  408 (537)
T KOG0274|consen  338 QLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTTIKVWDLRTKRKCIHT  408 (537)
T ss_pred             Eec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccceEeecCCchhhhhhh
Confidence            874    569999999999999999999999999999999999988776 88999887    566999999999 99999


Q ss_pred             EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1103)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~  650 (1103)
                      +.+|.   ..+..+.+  .++++++++.|++|++||..+++++..+... +...|..+++.  ...+++++.++.+++||
T Consensus       409 l~~h~---~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~d  480 (537)
T KOG0274|consen  409 LQGHT---SLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWD  480 (537)
T ss_pred             hcCCc---cccccccc--ccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEe
Confidence            99988   66655544  5689999999999999999999999999874 23445666654  46899999999999999


Q ss_pred             cCCCCeeEec
Q 001310          651 TPESNSVDAA  660 (1103)
Q Consensus       651 ~~~~~~~~~~  660 (1103)
                      +.++.....+
T Consensus       481 l~~~~~~~~l  490 (537)
T KOG0274|consen  481 LRSGTLIRTL  490 (537)
T ss_pred             cccCchhhhh
Confidence            9999777655

>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=1.7e-25  Score=217.66  Aligned_cols=271  Identities=16%  Similarity=0.190  Sum_probs=230.2

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC--CCceEE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKV  469 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~i  469 (1103)
                      +..-.+.|.++.|+++|.+|++++.|.+++|||..+|+.++   ++..+...|..++|.....  .++.++.  |.+|+.
T Consensus        10 f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~---ti~skkyG~~~~~Fth~~~--~~i~sStk~d~tIry   84 (311)
T KOG1446|consen   10 FRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVK---TINSKKYGVDLACFTHHSN--TVIHSSTKEDDTIRY   84 (311)
T ss_pred             cccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceee---EeecccccccEEEEecCCc--eEEEccCCCCCceEE
Confidence            44567899999999999999999999999999999998766   6667778899999988877  5666665  889999


Q ss_pred             EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      -++.+.+.++.|.||...|.+++.+|.+  ..+++++.|++|++||++..++...+.....++  .+|.|.|-.+|++..
T Consensus        85 Lsl~dNkylRYF~GH~~~V~sL~~sP~~--d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi--~AfDp~GLifA~~~~  160 (311)
T KOG1446|consen   85 LSLHDNKYLRYFPGHKKRVNSLSVSPKD--DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI--AAFDPEGLIFALANG  160 (311)
T ss_pred             EEeecCceEEEcCCCCceEEEEEecCCC--CeEEecccCCeEEeeEecCCCCceEEecCCCcc--eeECCCCcEEEEecC
Confidence            9999999999999999999999997755  689999999999999999888887777666555  789999999999875


Q ss_pred             CCCCceeEEEEeCCCC--eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC-c
Q 001310          550 SKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN-P  626 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v-~  626 (1103)
                          ...|.+||++.-  .+...+.-........+.+.|+|||+.++.+...+.+++.|.-+|..+.++..+.....+ .
T Consensus       161 ----~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~  236 (311)
T KOG1446|consen  161 ----SELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPL  236 (311)
T ss_pred             ----CCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcce
Confidence                336999999853  344455443223468899999999999999999999999999999999888776543322 4


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccc-cccceeeeEEecC
Q 001310          627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPI  675 (1103)
Q Consensus       627 ~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~  675 (1103)
                      ..+|+||++++++|+.||+|.+|+++++..+..+++ +...+.++.|+|.
T Consensus       237 ~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~  286 (311)
T KOG1446|consen  237 SATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPR  286 (311)
T ss_pred             eEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCc
Confidence            788999999999999999999999999999998888 5778888888754

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.95  E-value=7.3e-27  Score=218.48  Aligned_cols=285  Identities=17%  Similarity=0.247  Sum_probs=226.8

Q ss_pred             ceEEEecC--CCceEEEEEcC-----CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC-C
Q 001310          337 PMSMDFHP--VQHTLLLVGTN-----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G  408 (1103)
Q Consensus       337 V~~v~~sp--dg~~llasgs~-----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g  408 (1103)
                      =.++.|||  +++..+|++..     .|++.|-++..++.+..  +.-+               .-+..+..++||++ .
T Consensus        11 GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~s~---------------d~~D~LfdV~Wse~~e   73 (311)
T KOG0277|consen   11 GYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQSY---------------DTEDGLFDVAWSENHE   73 (311)
T ss_pred             cceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EEee---------------ecccceeEeeecCCCc
Confidence            36789999  44422333332     47899999865544432  1111               14578999999995 5


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  488 (1103)
                      ..+++++.||++++||+...  -.++..++.|...|.++.|++-.++ .+++++-|++|++|+...++.++++.+|...|
T Consensus        74 ~~~~~a~GDGSLrl~d~~~~--s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~I  150 (311)
T KOG0277|consen   74 NQVIAASGDGSLRLFDLTMP--SKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCI  150 (311)
T ss_pred             ceEEEEecCceEEEeccCCC--CcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEE
Confidence            67888999999999996543  3566678899999999999998776 67777999999999999999999999999999


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCC-e
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEG-A  566 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~-~  566 (1103)
                      ....|+|. ...+++++|.|+++++||++.......+..|...+.++.|+.-.. .|++++.    ++.|++||++.- .
T Consensus       151 y~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~  225 (311)
T KOG0277|consen  151 YQAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRT  225 (311)
T ss_pred             EEEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhccc
Confidence            99999987 457999999999999999999888888999999999999998555 4555543    778999999864 4


Q ss_pred             eEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCe-eEEEEcCCCCCCCCceEEEec-CCCEEEEEECC
Q 001310          567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQ-LLTTIDAGGGLPENPRICFNK-NGTLLAVIANE  643 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d  643 (1103)
                      ++..+.+|.   -.|+.+.|+|.. ..|++++.|-+++|||...+. .+.+...|  ...+..+.||+ ++.++|+.+-|
T Consensus       226 pl~eL~gh~---~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~H--tEFv~g~Dws~~~~~~vAs~gWD  300 (311)
T KOG0277|consen  226 PLFELNGHG---LAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHH--TEFVCGLDWSLFDPGQVASTGWD  300 (311)
T ss_pred             cceeecCCc---eEEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhcc--ceEEeccccccccCceeeecccc
Confidence            566777777   899999999975 567789999999999998543 44555544  34577888887 67799999999


Q ss_pred             CeEEEEEc
Q 001310          644 NRIKILET  651 (1103)
Q Consensus       644 g~i~iw~~  651 (1103)
                      +.+.||+-
T Consensus       301 e~l~Vw~p  308 (311)
T KOG0277|consen  301 ELLYVWNP  308 (311)
T ss_pred             cceeeecc
Confidence            99999973

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=2.5e-26  Score=246.46  Aligned_cols=280  Identities=18%  Similarity=0.263  Sum_probs=241.1

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      ...-+.||..+  +||+|.. ..|++|+..++.....                   ..-++..|+++.|+++|.+||+|.
T Consensus       179 Y~nlldWss~n--~laValg-~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~  236 (484)
T KOG0305|consen  179 YLNLLDWSSAN--VLAVALG-QSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGT  236 (484)
T ss_pred             hhhHhhcccCC--eEEEEec-ceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEee
Confidence            34567888665  5677653 6899999999985543                   122478999999999999999999


Q ss_pred             CCCeEEEEEecCCCccccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE-eecCCCceEEEEe
Q 001310          416 SKHIVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCP  493 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v~~~~~  493 (1103)
                      .+|.|.|||..+.+.++   .+.+ |...|.+++|.  +.  .+.+|+.|+.|..+|+...+.... +.+|...|..+.|
T Consensus       237 ~~g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw  309 (484)
T KOG0305|consen  237 SDGTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW  309 (484)
T ss_pred             cCCeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE
Confidence            99999999999877665   5667 99999999998  34  699999999999999998877655 8899999999999


Q ss_pred             eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEe
Q 001310          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1103)
                      +  +++.++++|+.|+.+.|||.........+..|...|..++|+| ....||+|++  ..|++|++||..+|+.+..+.
T Consensus       310 s--~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vd  385 (484)
T KOG0305|consen  310 S--PDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVD  385 (484)
T ss_pred             C--CCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccc
Confidence            5  4778999999999999999988899999999999999999999 5667777765  558899999999999988776


Q ss_pred             cccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310          573 GLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1103)
Q Consensus       573 ~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~  650 (1103)
                      ..    ..|..+.|++..+-+++  |..++.|.||+..+.+.+..+.+|.  ..|..++++|||..+++|+.|.++++|+
T Consensus       386 tg----sQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~  459 (484)
T KOG0305|consen  386 TG----SQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWN  459 (484)
T ss_pred             cC----CceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEecc
Confidence            53    58999999999877777  5577899999999999999998774  4699999999999999999999999999


Q ss_pred             cCCC
Q 001310          651 TPES  654 (1103)
Q Consensus       651 ~~~~  654 (1103)
                      +-+.
T Consensus       460 ~f~~  463 (484)
T KOG0305|consen  460 LFDE  463 (484)
T ss_pred             ccCC
Confidence            8764

>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]

Probab=99.95  E-value=1.7e-26  Score=259.92  Aligned_cols=305  Identities=17%  Similarity=0.233  Sum_probs=237.4

Q ss_pred             ccccEEEEEEecCCcEEEEee--cCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310          733 KANKISRLTYNNGGQAIFALA--SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~--~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  810 (1103)
                      +...|.++..+|+|..+++++  .||.+.||+...--.          ....++..-...+..    ...|.+.|.|+.|
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~----m~~h~~sv~CVR~   77 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT----MDDHDGSVNCVRF   77 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee----eccccCceeEEEE
Confidence            445689999999999999999  899999998654211          011122210111111    1149999999999


Q ss_pred             ecCCCEEEEEcC-CeEEEEEcCC------------------ceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310          811 SKNDAYLFSASG-GVISLYIVMT------------------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1103)
Q Consensus       811 s~d~~~l~~~~d-g~i~iwd~~~------------------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1103)
                      +|||++||+|+| +.|.||+...                  ++....+.+|...|..++|+| ++.+||+++.|++|.||
T Consensus        78 S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiw  156 (942)
T KOG0973|consen   78 SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIW  156 (942)
T ss_pred             CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEE
Confidence            999999999995 6689998762                  346778899999999999999 89999999999999999


Q ss_pred             EcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE
Q 001310          872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1103)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  951 (1103)
                      +..+.+.+.++++|.+.|-.+.|.|-|++|||-+.|++|+||++.+..+.+  .+..+..+.........+.|||||.+|
T Consensus       157 n~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k--~It~pf~~~~~~T~f~RlSWSPDG~~l  234 (942)
T KOG0973|consen  157 NAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEK--SITKPFEESPLTTFFLRLSWSPDGHHL  234 (942)
T ss_pred             ccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeE--eeccchhhCCCcceeeecccCCCcCee
Confidence            999999999999999999999999999999999999999999987744333  333333333333468899999999999


Q ss_pred             EEE--eC---CeEEEEECCCceEEEEeeCCCCcCeEEEEEcc--------CC-----C----EEEEEecCCcEEEEeCCC
Q 001310          952 LLV--HE---THLAIYEAEELTCLKQWFPISSVPISQATFSC--------DC-----R----MVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       952 ~~~--~d---~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~--------dg-----~----~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      ++.  .+   ..+.|.+-.+.+.-.. +.||..++..+.|+|        +|     .    .+|+|+.|++|.||....
T Consensus       235 as~nA~n~~~~~~~IieR~tWk~~~~-LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~  313 (942)
T KOG0973|consen  235 ASPNAVNGGKSTIAIIERGTWKVDKD-LVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL  313 (942)
T ss_pred             cchhhccCCcceeEEEecCCceeeee-eecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC
Confidence            983  22   3688888876666555 668999999999997        11     1    578999999999999876


Q ss_pred             ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310         1010 LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus      1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
                      .+.+..+..  .                .+..|  ++++|+|| |..|.+++.||+|.+..+.+.+.
T Consensus       314 ~RPl~vi~~--l----------------f~~SI--~DmsWspd-G~~LfacS~DGtV~~i~Fee~El  359 (942)
T KOG0973|consen  314 PRPLFVIHN--L----------------FNKSI--VDMSWSPD-GFSLFACSLDGTVALIHFEEKEL  359 (942)
T ss_pred             CCchhhhhh--h----------------hcCce--eeeeEcCC-CCeEEEEecCCeEEEEEcchHHh
Confidence            665533330  0                11112  68999999 89999999999999999866554

>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=2.3e-26  Score=235.55  Aligned_cols=282  Identities=15%  Similarity=0.206  Sum_probs=230.7

Q ss_pred             ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  812 (1103)
                      ..+.|.+++|+|...+=++....-.+.+|+.....                      ....+  .  .....+.++.|..
T Consensus        25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~~----------------------~~k~~--s--rFk~~v~s~~fR~   78 (487)
T KOG0310|consen   25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTRS----------------------VRKTF--S--RFKDVVYSVDFRS   78 (487)
T ss_pred             ccCcceeEecCCCCCCceEEecccEEEEEecchhh----------------------hhhhH--H--hhccceeEEEeec
Confidence            45789999999977665555555566666643221                      11111  0  1467889999999


Q ss_pred             CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEE
Q 001310          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1103)
Q Consensus       813 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1103)
                      ||+++|+|+ .|.|++||+++...++.+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+.+|++.|.|
T Consensus        79 DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~  158 (487)
T KOG0310|consen   79 DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRC  158 (487)
T ss_pred             CCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEe
Confidence            999999998 4999999988877889999999999999999999999999999999999999999877789999999999


Q ss_pred             EEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEE
Q 001310          892 LVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCL  970 (1103)
Q Consensus       892 l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~  970 (1103)
                      .+|+|- +.+++|||.||+|++||+....   ........|     .+|..+.|-|.|..+|++....|++||+.+|...
T Consensus       159 g~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg-----~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ql  230 (487)
T KOG0310|consen  159 GDISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG-----CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQL  230 (487)
T ss_pred             eccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC-----CceeeEEEcCCCCEEEEcCCCeEEEEEecCCcee
Confidence            999986 4589999999999999998743   122333222     3799999999999999999999999999976655


Q ss_pred             EEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEEC
Q 001310          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAH 1050 (1103)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1050 (1103)
                      ......|...|+|+++..|++.|++++-|+.|++||+.+.+.+-.+...                    ++|  ++++-+
T Consensus       231 l~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~--------------------~pv--Lsiavs  288 (487)
T KOG0310|consen  231 LTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYP--------------------GPV--LSIAVS  288 (487)
T ss_pred             hhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeecc--------------------cce--eeEEec
Confidence            5545569999999999999999999999999999999999998888722                    235  456666


Q ss_pred             CCCCcEEEEEecCCcEEEEcc
Q 001310         1051 PLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1051 p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      |+ ++.++.|..+|.+.+=+.
T Consensus       289 ~d-d~t~viGmsnGlv~~rr~  308 (487)
T KOG0310|consen  289 PD-DQTVVIGMSNGLVSIRRR  308 (487)
T ss_pred             CC-CceEEEecccceeeeehh
Confidence            76 789999999998887754

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=5.8e-26  Score=218.08  Aligned_cols=277  Identities=18%  Similarity=0.242  Sum_probs=221.2

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~  410 (1103)
                      ...+.|.+++|||....+++.||-|++|++|+++. |..+.                  .....|.++|-+++|+.||..
T Consensus        25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~Wsddgsk   86 (347)
T KOG0647|consen   25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSK   86 (347)
T ss_pred             CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCce
Confidence            44679999999996666888999999999999987 34332                  125569999999999999999


Q ss_pred             EEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEE
Q 001310          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1103)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  490 (1103)
                      +++|+.|+.+++||+.+++..    .+..|.++|.++.|-+...+..|+|||.|++|+.||.+...++.++. -.+.+++
T Consensus        87 Vf~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa  161 (347)
T KOG0647|consen   87 VFSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYA  161 (347)
T ss_pred             EEeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeee
Confidence            999999999999999998533    46789999999999887665689999999999999999999988886 4566777


Q ss_pred             EEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-c-CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--e
Q 001310          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--A  566 (1103)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~  566 (1103)
                      +..    .-.+++.+..+..|.+|++++....... . .-.-.+.|++..+|....+.|+-    +|++.+..+..+  +
T Consensus       162 ~Dv----~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~  233 (347)
T KOG0647|consen  162 ADV----LYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPK  233 (347)
T ss_pred             hhc----cCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCcc
Confidence            754    2357899999999999999876544322 1 12336889999998888888876    555666666655  4


Q ss_pred             eEEEEeccccc------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310          567 IKRTYQGLQLQ------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1103)
Q Consensus       567 ~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~  640 (1103)
                      .-..|+.|...      -..|++++|+|....|+++|.||++.+||-.....+...+.+  ..+|++.+|+.+|.+++.+
T Consensus       234 ~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~--~qpItcc~fn~~G~ifaYA  311 (347)
T KOG0647|consen  234 DNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETH--PQPITCCSFNRNGSIFAYA  311 (347)
T ss_pred             CceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcC--CCccceeEecCCCCEEEEE
Confidence            44556666521      246888999999999999999999999999887777776655  4579999999999998866


Q ss_pred             E
Q 001310          641 A  641 (1103)
Q Consensus       641 ~  641 (1103)
                      .
T Consensus       312 ~  312 (347)
T KOG0647|consen  312 L  312 (347)
T ss_pred             e
Confidence            4

>KOG1407 consensus WD40 repeat protein [Function unknown]

Probab=99.95  E-value=6.9e-26  Score=212.92  Aligned_cols=254  Identities=16%  Similarity=0.242  Sum_probs=214.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|...|.+++|+.+|.+||+|+.|+++.+|++...+... .....+|.+.|-.++|.|.... .+++++.|++|++||
T Consensus        16 ~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~wd   93 (313)
T KOG1407|consen   16 LQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRIWD   93 (313)
T ss_pred             hhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEEEE
Confidence            66799999999999999999999999999999999875433 3357799999999999997766 799999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      +.++++...+....+.+. ++|  +++|.+++.++.|..|.+.|.++.+...... ....+..++|+.++.+++...   
T Consensus        94 ~r~~k~~~~i~~~~eni~-i~w--sp~g~~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~ne~~w~~~nd~Fflt~---  166 (313)
T KOG1407|consen   94 IRSGKCTARIETKGENIN-ITW--SPDGEYIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVNEISWNNSNDLFFLTN---  166 (313)
T ss_pred             eccCcEEEEeeccCcceE-EEE--cCCCCEEEEecCcccEEEEEecccceeehhc-ccceeeeeeecCCCCEEEEec---
Confidence            999999998876555554 344  5678899999999999999988766554333 223567788988888777664   


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                       |.|.|.|.....-+.+..++.|.   ....|+.|+|+|+++++|+.|-.+.+||++.--+++.+....  -+|..++||
T Consensus       167 -GlG~v~ILsypsLkpv~si~AH~---snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld--wpVRTlSFS  240 (313)
T KOG1407|consen  167 -GLGCVEILSYPSLKPVQSIKAHP---SNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD--WPVRTLSFS  240 (313)
T ss_pred             -CCceEEEEeccccccccccccCC---cceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc--CceEEEEec
Confidence             36779999999999999999988   888999999999999999999999999999988888887553  469999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCCeeEec
Q 001310          632 KNGTLLAVIANENRIKILETPESNSVDAA  660 (1103)
Q Consensus       632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1103)
                      .||++||++++|..|-|=++++|..+..+
T Consensus       241 ~dg~~lASaSEDh~IDIA~vetGd~~~eI  269 (313)
T KOG1407|consen  241 HDGRMLASASEDHFIDIAEVETGDRVWEI  269 (313)
T ss_pred             cCcceeeccCccceEEeEecccCCeEEEe
Confidence            99999999999999999988888655444

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.95  E-value=2.5e-26  Score=233.35  Aligned_cols=293  Identities=14%  Similarity=0.197  Sum_probs=237.4

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEee----ccccccceeeeeccCCCccEEEE
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWD----IGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      .+.+..|.-.|.||+++||++ +..+++.+++|.=|++.+|+....    +|.    ++....+++..- .+|...|.++
T Consensus       135 ~~~~~~H~~s~~~vals~d~~-~~fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~  208 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDK-RVFSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTL  208 (479)
T ss_pred             ceeeccccCcceEEEeecccc-ceeecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEE
Confidence            466778888999999999999 589999999999999999985521    111    111233344332 4899999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  482 (1103)
                      +.|+||+|||+|+.|..|.||+..+.+.++   .+.+|.+.|.+++|-....  -+++++.|++|++|+++....+.++-
T Consensus       209 avS~Dgkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetly  283 (479)
T KOG0299|consen  209 AVSSDGKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLY  283 (479)
T ss_pred             EEcCCCcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHh
Confidence            999999999999999999999999988766   6889999999999987666  69999999999999999999999999


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      +|.+.|.++....  -+..+..|+.|+++++|++ ....+..+.++...+.|++|-.+. .+++|+.    +|.|.+|++
T Consensus       284 GHqd~v~~IdaL~--reR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~~-HfvsGSd----nG~IaLWs~  355 (479)
T KOG0299|consen  284 GHQDGVLGIDALS--RERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFINDE-HFVSGSD----NGSIALWSL  355 (479)
T ss_pred             CCccceeeechhc--ccceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEeccc-ceeeccC----CceEEEeee
Confidence            9999999997643  3345566669999999999 455667778888899999997654 5667765    667999999


Q ss_pred             CCCeeEEEEeccc-c--------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCCCCCCCceEE
Q 001310          563 SEGAIKRTYQGLQ-L--------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       563 ~~~~~~~~~~~~~-~--------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~  629 (1103)
                      .+.+++......+ .        +...|++++..|..+.+++|+.+|.|++|-+..+    +++..++..   ..|++++
T Consensus       356 ~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~~---GfVNsl~  432 (479)
T KOG0299|consen  356 LKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSLV---GFVNSLA  432 (479)
T ss_pred             cccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeecccc---cEEEEEE
Confidence            9998877665322 1        1127999999999999999999999999999887    444555533   4589999


Q ss_pred             EecCCCEEEEEE
Q 001310          630 FNKNGTLLAVIA  641 (1103)
Q Consensus       630 ~s~~g~~l~~~~  641 (1103)
                      |+++|+.+++|.
T Consensus       433 f~~sgk~ivagi  444 (479)
T KOG0299|consen  433 FSNSGKRIVAGI  444 (479)
T ss_pred             EccCCCEEEEec
Confidence            999999776663

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.95  E-value=1.1e-26  Score=238.19  Aligned_cols=309  Identities=18%  Similarity=0.230  Sum_probs=242.0

Q ss_pred             cCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      ..+|..+-..|.+|+..|+++++.|.|.+ +++|+.|.+|++||+........ .|             ..+.......|
T Consensus       153 ~~IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~~-~f-------------r~l~P~E~h~i  217 (641)
T KOG0772|consen  153 KLIPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASMR-SF-------------RQLQPCETHQI  217 (641)
T ss_pred             hcCCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccch-hh-------------hccCccccccc
Confidence            44688888899999999999999999996 89999999999999976432211 11             12244566789


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCc---------cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~---------~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      .+++||+.|..|++.+....++|+|-.+-+.         +.-...-+||...++|.+|.|+.+. .++|++.||++|||
T Consensus       218 ~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiW  296 (641)
T KOG0772|consen  218 NSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIW  296 (641)
T ss_pred             ceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEE
Confidence            9999999999999998888899999765332         3333445799999999999999988 79999999999999


Q ss_pred             eCCCCce-eEEee-----cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE---EecCCCc--cEEEEEEcc
Q 001310          471 DAVTGSR-TYSFE-----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL--GCTRMAYSA  539 (1103)
Q Consensus       471 d~~~~~~-~~~~~-----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~--~i~~~~~s~  539 (1103)
                      |+...+. +..++     +..-++++++|  ++++.+|++|..||.|.+|+........   .-..|..  .|+|++||+
T Consensus       297 dv~~~k~q~qVik~k~~~g~Rv~~tsC~~--nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~  374 (641)
T KOG0772|consen  297 DVNNTKSQLQVIKTKPAGGKRVPVTSCAW--NRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSY  374 (641)
T ss_pred             ecCCchhheeEEeeccCCCcccCceeeec--CCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecc
Confidence            9986543 33332     23446777888  5578899999999999999975543322   2334444  899999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCCCCEEEEEe------CCCcEEEEECCCCee
Q 001310          540 NGRRLFSCGTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG------DDHVIKIWDMNKVQL  612 (1103)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~  612 (1103)
                      ||++|++-+.    +..+.+||++.. +++....+.. ....-+.++|+|+.+.|++|.      ..|++.+||..+.+.
T Consensus       375 dg~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~-t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~  449 (641)
T KOG0772|consen  375 DGNYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLP-TPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDT  449 (641)
T ss_pred             ccchhhhccC----CCceeeeeccccccchhhhcCCC-ccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceee
Confidence            9999998765    667999999865 3444444433 224567789999999999975      457899999999999


Q ss_pred             EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      +..+...  ...|..+.|+|.-+.+.+++.||.+++|--.+
T Consensus       450 v~ki~i~--~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~  488 (641)
T KOG0772|consen  450 VYKIDIS--TASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN  488 (641)
T ss_pred             EEEecCC--CceEEEEeecchhhheeeecCCCceEEEECcc
Confidence            9998876  35688999999999999999999999985543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=1.2e-25  Score=217.13  Aligned_cols=240  Identities=19%  Similarity=0.275  Sum_probs=206.5

Q ss_pred             CCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC--EEEEEeCCCeEEEEEcCC
Q 001310          799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARS  875 (1103)
Q Consensus       799 ~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~  875 (1103)
                      ..|...++++|+  ++.++|+|+ |.+|+|||+.+...+..+..|.+.|+++.|.+ ...  .|.+|+.||.|.+|+...
T Consensus        40 ~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~  116 (362)
T KOG0294|consen   40 SAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGS  116 (362)
T ss_pred             cccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCC
Confidence            369999999998  689999998 89999999999999999999999999999998 544  899999999999999999


Q ss_pred             ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe
Q 001310          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1103)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~  955 (1103)
                      .+++..+++|.+.|+.++.+|.|++.++.+.|+.++.||+-.|+.-....+..         ..+.+.|+|.|.+++++.
T Consensus       117 W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~---------~at~v~w~~~Gd~F~v~~  187 (362)
T KOG0294|consen  117 WELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKN---------KATLVSWSPQGDHFVVSG  187 (362)
T ss_pred             eEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCC---------cceeeEEcCCCCEEEEEe
Confidence            99999999999999999999999999999999999999999987444323222         235699999999999999


Q ss_pred             CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEe
Q 001310          956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC 1035 (1103)
Q Consensus       956 d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1103)
                      ...|-+|.+++.........  ...+.++.| -++..|++|+.|+.|.+||.+++...+.+.                  
T Consensus       188 ~~~i~i~q~d~A~v~~~i~~--~~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~~~~~~------------------  246 (362)
T KOG0294|consen  188 RNKIDIYQLDNASVFREIEN--PKRILCATF-LDGSELLVGGDNEWISLKDTDSDTPLTEFL------------------  246 (362)
T ss_pred             ccEEEEEecccHhHhhhhhc--cccceeeee-cCCceEEEecCCceEEEeccCCCccceeee------------------
Confidence            99999999987766654332  345667776 456789999999999999999877776666                  


Q ss_pred             eccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310         1036 YCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus      1036 ~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
                       +|.++|..+..--.|+ +.+|++++.||.|+|||+..
T Consensus       247 -AH~~RVK~i~~~~~~~-~~~lvTaSSDG~I~vWd~~~  282 (362)
T KOG0294|consen  247 -AHENRVKDIASYTNPE-HEYLVTASSDGFIKVWDIDM  282 (362)
T ss_pred             -cchhheeeeEEEecCC-ceEEEEeccCceEEEEEccc
Confidence             7889999877666777 89999999999999999953

>PTZ00420 coronin; Provisional

Probab=99.95  E-value=6.4e-25  Score=247.12  Aligned_cols=237  Identities=10%  Similarity=0.095  Sum_probs=185.6

Q ss_pred             ccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCCCc-c----ccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSD-A----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~~~-~----~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~  465 (1103)
                      +.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++.. .    .....+.+|...|.+++|+|++.. ++++++.|+
T Consensus        70 L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~Dg  148 (568)
T PTZ00420         70 LKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDS  148 (568)
T ss_pred             EcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCC
Confidence            7899999999999996 89999999999999999986432 1    123357899999999999999874 568999999


Q ss_pred             ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEE-----EEEccC
Q 001310          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR-----MAYSAN  540 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-----~~~s~d  540 (1103)
                      +|+|||+.+++.+..+. |...|.+++|++  +|.+|++++.|+.|++||++++.....+..|.+.+.+     ..|+++
T Consensus       149 tIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d  225 (568)
T PTZ00420        149 FVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGD  225 (568)
T ss_pred             eEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCC
Confidence            99999999999888776 667899999965  6789999999999999999999888888888765432     345689


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310          541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1103)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  619 (1103)
                      +.++++++.++..++.|++||++. ++.+..+..+. ..+.+......+++.++++|+.|++|++|++..+. +..+...
T Consensus       226 ~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~-~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~-~~~l~~~  303 (568)
T PTZ00420        226 DNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDN-ASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS-IRKVNEY  303 (568)
T ss_pred             CCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecC-CccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc-EEeeccc
Confidence            999999887655556899999985 55555543322 12334444445568888999999999999998764 3334333


Q ss_pred             CCCCCCceEEEecCC
Q 001310          620 GGLPENPRICFNKNG  634 (1103)
Q Consensus       620 ~~~~~v~~v~~s~~g  634 (1103)
                      ....++.+++|.|..
T Consensus       304 ~s~~p~~g~~f~Pkr  318 (568)
T PTZ00420        304 KSCSPFRSFGFLPKQ  318 (568)
T ss_pred             ccCCCccceEEcccc
Confidence            344567889999964

>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]

Probab=99.95  E-value=6e-26  Score=224.67  Aligned_cols=281  Identities=15%  Similarity=0.205  Sum_probs=233.4

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeC
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      -|...|.++...  ++.|++|+.||.+++||..+. ...   .+.||.++|.+++|.- +...-.+++++.|.++++|-+
T Consensus       103 ~hdDWVSsv~~~--~~~IltgsYDg~~riWd~~Gk-~~~---~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~  176 (423)
T KOG0313|consen  103 LHDDWVSSVKGA--SKWILTGSYDGTSRIWDLKGK-SIK---TIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKW  176 (423)
T ss_pred             cchhhhhhhccc--CceEEEeecCCeeEEEecCCc-eEE---EEecCCcceeeeEEEecCCccceEEEecCCceEEEEEe
Confidence            388899999888  899999999999999999864 232   6789999999888743 322225999999999999998


Q ss_pred             CCCcee----EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-------------------------CCCeeE
Q 001310          473 VTGSRT----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------------------------SLGARV  523 (1103)
Q Consensus       473 ~~~~~~----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------------------------~~~~~~  523 (1103)
                      +.++..    ..-.||...|.++..  .+++..+++|+.|.+|++|+..                         ++.+..
T Consensus       177 ~~~~~~~~~~~~~~GHk~~V~sVsv--~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v  254 (423)
T KOG0313|consen  177 NVGENKVKALKVCRGHKRSVDSVSV--DSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV  254 (423)
T ss_pred             cCchhhhhHHhHhcccccceeEEEe--cCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence            877543    344599999999987  4577899999999999999832                         122345


Q ss_pred             EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310          524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1103)
Q Consensus       524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  603 (1103)
                      .+.+|..+|.++.|++ ...+++++.    |.+|+.||+.++..+..+.+.    ..+.++..+|..+.|++|+.|..|+
T Consensus       255 tl~GHt~~Vs~V~w~d-~~v~yS~Sw----DHTIk~WDletg~~~~~~~~~----ksl~~i~~~~~~~Ll~~gssdr~ir  325 (423)
T KOG0313|consen  255 TLEGHTEPVSSVVWSD-ATVIYSVSW----DHTIKVWDLETGGLKSTLTTN----KSLNCISYSPLSKLLASGSSDRHIR  325 (423)
T ss_pred             EecccccceeeEEEcC-CCceEeecc----cceEEEEEeecccceeeeecC----cceeEeecccccceeeecCCCCcee
Confidence            6788999999999988 667777775    778999999999998888874    4899999999999999999999999


Q ss_pred             EEECCCCe---eEEEEcCCCCCCCCceEEEecC-CCEEEEEECCCeEEEEEcCCCC-eeEeccccccceeeeEEecCCce
Q 001310          604 IWDMNKVQ---LLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESN-SVDAAGVLSDNLRKLSVNPISTV  678 (1103)
Q Consensus       604 iwd~~~~~---~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~  678 (1103)
                      +||.+++.   ...++.+|  ...|.++.|+|. ..+|++++.|+++++||+.+.. ++..+.+|.+.|.++.++     
T Consensus       326 l~DPR~~~gs~v~~s~~gH--~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-----  398 (423)
T KOG0313|consen  326 LWDPRTGDGSVVSQSLIGH--KNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-----  398 (423)
T ss_pred             ecCCCCCCCceeEEeeecc--hhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-----
Confidence            99998764   23445544  557999999995 5578899999999999999887 899999999999999987     


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                                        ++..+++|+.|.+++++...
T Consensus       399 ------------------~~~~IvSGGaD~~l~i~~~~  418 (423)
T KOG0313|consen  399 ------------------EGGLIVSGGADNKLRIFKGS  418 (423)
T ss_pred             ------------------CCceEEeccCcceEEEeccc
Confidence                              67889999999999998643

>KOG0283 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.95  E-value=5.3e-26  Score=249.65  Aligned_cols=278  Identities=14%  Similarity=0.176  Sum_probs=212.8

Q ss_pred             cccccEEEEEEecCCcEEEEeecCceEEEeecCCCcc------c---------ccc----------ccc---------cc
Q 001310          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL------T---------LST----------EAT---------TK  777 (1103)
Q Consensus       732 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~------~---------~~~----------~~~---------~~  777 (1103)
                      .|.+.|.++.||+||++|++++.||.|+||.+.....      .         ..+          ...         ..
T Consensus       265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~  344 (712)
T KOG0283|consen  265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ  344 (712)
T ss_pred             ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence            5899999999999999999999999999999977211      0         000          000         00


Q ss_pred             cCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC
Q 001310          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN  857 (1103)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~  857 (1103)
                      .+..+.+.....-....-....||...|..+.||.++-+|-+.-|.+|++|++...+++..|. |...|||++|+|-|.+
T Consensus       345 s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDr  423 (712)
T KOG0283|consen  345 SPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDR  423 (712)
T ss_pred             CccccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCC
Confidence            000001100000000000113379999999999998655444449999999999999999997 9999999999999999


Q ss_pred             EEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCC
Q 001310          858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  937 (1103)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  937 (1103)
                      |+++|+-||.|+||++...+.+.-..-+ .-|++++|+|||+..+.|+.+|.+++|+....+......+....+......
T Consensus       424 yFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~  502 (712)
T KOG0283|consen  424 YFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGK  502 (712)
T ss_pred             cEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCc
Confidence            9999999999999999987766555544 789999999999999999999999999999988777666665555444444


Q ss_pred             CceEEEEcCCCC--EEEEEeCCeEEEEECCCceEEEEeeCCCC-cCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310          938 SETHIQFHKDQT--RFLLVHETHLAIYEAEELTCLKQWFPISS-VPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       938 ~v~~l~fs~dg~--~l~~~~d~~v~iwd~~~~~~~~~~~~~h~-~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      .|+.+.|.|...  .|+++.|.+|+|||..+...+..+...|+ ..-....|+.||++|+++++|..|++|+++...
T Consensus       503 rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~  579 (712)
T KOG0283|consen  503 RITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN  579 (712)
T ss_pred             eeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence            799999998654  77788999999999988787777443342 333567899999999999999999999986544

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.95  E-value=1.1e-25  Score=217.15  Aligned_cols=311  Identities=13%  Similarity=0.164  Sum_probs=235.2

Q ss_pred             eEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcccccc
Q 001310          657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  736 (1103)
Q Consensus       657 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  736 (1103)
                      +..+++|...|++++|+                      .||+.+++++.|++|++|++..-...+.+.++..-  ..+.
T Consensus        79 ~~~LKgH~~~vt~~~Fs----------------------SdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nv--e~dh  134 (420)
T KOG2096|consen   79 VSVLKGHKKEVTDVAFS----------------------SDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNV--EYDH  134 (420)
T ss_pred             hhhhhccCCceeeeEEc----------------------CCCceeEEEeCCceEEEEecchhhhhhhhHhhccc--cCCC
Confidence            34678999999999997                      79999999999999999998753332222222211  2246


Q ss_pred             EEEEEEecCCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310          737 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1103)
Q Consensus       737 i~~~~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  815 (1103)
                      .+.++|+||-+.+++... ...+++|.+...+-   |...-  +.--||...        + ...|.-.+..+-...+++
T Consensus       135 pT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v~~D~~~--------f-~~kh~v~~i~iGiA~~~k  200 (420)
T KOG2096|consen  135 PTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFVHIDNLE--------F-ERKHQVDIINIGIAGNAK  200 (420)
T ss_pred             ceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccccccccc--------c-chhcccceEEEeecCCce
Confidence            788999999887766655 46889998754321   11110  111122100        1 113677788888889999


Q ss_pred             EEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC---c-----eeEEEeccCC
Q 001310          816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS---S-----EVISKLEGHS  886 (1103)
Q Consensus       816 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~---~-----~~~~~l~~h~  886 (1103)
                      +|++++ |..|.+|++. |+.+..+......-+..+.|| +|+++|+++..-.|++|..--   |     ..+..++||.
T Consensus       201 ~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~  278 (420)
T KOG2096|consen  201 YIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ  278 (420)
T ss_pred             EEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch
Confidence            999998 6789999998 999998887777778899999 999999999999999998742   2     2356789999


Q ss_pred             CCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee--eeeeeecCCCcc-cCCCCceEEEEcCCCCEEEEEeCCeEEEEE
Q 001310          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--TCRSLQTPDGVM-TLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1103)
Q Consensus       887 ~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~--~~~~~~~~~~~~-~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd  963 (1103)
                      ..|..++||++...++|.|.||+++|||.+-....  ....++...... ...+....+++||.|+.||++....+.+|.
T Consensus       279 saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~  358 (420)
T KOG2096|consen  279 SAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFA  358 (420)
T ss_pred             hheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEE
Confidence            99999999999999999999999999998752211  111222221110 111345689999999999999999999999


Q ss_pred             CCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      .++|+....+...|+..|++++|++||++++|++ |..+++..-.
T Consensus       359 se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~nt  402 (420)
T KOG2096|consen  359 SEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNT  402 (420)
T ss_pred             cccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCC
Confidence            9999998888888999999999999999999986 7889887633

>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]

Probab=99.94  E-value=1.7e-26  Score=230.89  Aligned_cols=285  Identities=18%  Similarity=0.248  Sum_probs=240.7

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +..|.+.|..+.|-++...|++|+.|..|++|++..++ .....++.|-.++|+++.|.++++  .+++++.|+.+++|+
T Consensus       171 ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~Wn  247 (459)
T KOG0288|consen  171 LDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLWN  247 (459)
T ss_pred             hhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeeee
Confidence            56799999999999999999999999999999998876 233346788889999999999999  799999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      +...+...++.||.+.|+++.|.-..  ..+++|+.|.+|+.||+....+..++. ....+..++.+  ...++++..  
T Consensus       248 vd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~--  320 (459)
T KOG0288|consen  248 VDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF--  320 (459)
T ss_pred             ccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc--
Confidence            99999999999999999999986443  349999999999999999866655433 22344445544  445666655  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC--CCCCceEE
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPRIC  629 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~  629 (1103)
                        +..|+.||.++.........+    +.|+++..++++..+++.+.|.++.+.|+++.+....+...+.  ....+.+.
T Consensus       321 --DkkvRfwD~Rs~~~~~sv~~g----g~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvv  394 (459)
T KOG0288|consen  321 --DKKVRFWDIRSADKTRSVPLG----GRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVV  394 (459)
T ss_pred             --ccceEEEeccCCceeeEeecC----cceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeE
Confidence              556999999999998888874    4899999999999999999999999999999988888865432  23478899


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccc--eeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDN--LRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~--i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      |||++.|+++|+.||.|+||++.++++...+......  |++++|+                      |.|..+++++.+
T Consensus       395 fSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~----------------------~sG~~Llsadk~  452 (459)
T KOG0288|consen  395 FSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWN----------------------PSGSGLLSADKQ  452 (459)
T ss_pred             ECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEc----------------------CCCchhhcccCC
Confidence            9999999999999999999999999988887766555  8989887                      568888999999


Q ss_pred             ccccccc
Q 001310          708 NKSEVEK  714 (1103)
Q Consensus       708 ~~i~~w~  714 (1103)
                      +.+.+|.
T Consensus       453 ~~v~lW~  459 (459)
T KOG0288|consen  453 KAVTLWT  459 (459)
T ss_pred             cceEecC
Confidence            9998883

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.94  E-value=2.6e-25  Score=236.87  Aligned_cols=284  Identities=18%  Similarity=0.298  Sum_probs=241.2

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE-EE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR-VV  403 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-~~  403 (1103)
                      .+.+.|.||...|..+++.+..  .++++|.||++++|+-..++-+.+.                 .+.+|.+-|.+ ++
T Consensus         5 ~ls~~l~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~~~-----------------~~~~~~g~i~~~i~   65 (745)
T KOG0301|consen    5 KLSHELEGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLETH-----------------AFEGPKGFIANSIC   65 (745)
T ss_pred             eeEEEeccCccchheeEecCCe--EEeecCCCCceeeeeccCcccccce-----------------ecccCcceeeccce
Confidence            4668899999999999988876  4789999999999998766655432                 25678888877 88


Q ss_pred             ECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310          404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  482 (1103)
                      +-+ |+-.|++|+.|++|.+|...+...+.   .+.||...|.+++...++.   ++|||.|.++++|-  .+++...+.
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~--~~~l~~~l~  137 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR--IGELVYSLQ  137 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec--chhhhcccC
Confidence            875 66679999999999999999886555   7899999999999877775   99999999999994  577788899


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      +|...|++++..+..   .+++|+.|.+|++|.  .++...++.+|..-|..+++-+++.++ +|+.    ++.|+.|++
T Consensus       138 gH~asVWAv~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~fl-ScsN----Dg~Ir~w~~  207 (745)
T KOG0301|consen  138 GHTASVWAVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSHFL-SCSN----DGSIRLWDL  207 (745)
T ss_pred             CcchheeeeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCCeE-eecC----CceEEEEec
Confidence            999999999886543   899999999999994  477888999999999999999887655 5544    778999998


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                       +|+.+..+.+|.   .-+.++....++..++++++|++++||+..  ++.+.+..++.  .++++.+-++|. +++|+.
T Consensus       208 -~ge~l~~~~ght---n~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~S  278 (745)
T KOG0301|consen  208 -DGEVLLEMHGHT---NFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGS  278 (745)
T ss_pred             -cCceeeeeeccc---eEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEecc
Confidence             899999999998   899999988888899999999999999976  77788876643  488898888885 778888


Q ss_pred             CCeEEEEEcCCC
Q 001310          643 ENRIKILETPES  654 (1103)
Q Consensus       643 dg~i~iw~~~~~  654 (1103)
                      ||.|+||.....
T Consensus       279 DG~VrVfT~~k~  290 (745)
T KOG0301|consen  279 DGRVRVFTVDKD  290 (745)
T ss_pred             CceEEEEEeccc
Confidence            999999988754

>PTZ00421 coronin; Provisional

Probab=99.94  E-value=1.1e-24  Score=245.07  Aligned_cols=270  Identities=17%  Similarity=0.198  Sum_probs=211.2

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc----------ccceEeccccccEEEEEEec-CCCceEEEEEcC
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA----------RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGD  463 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~----------~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~  463 (1103)
                      |-..|.....++|+..+++++.+..+..|+..++..+          .....+.+|.+.|.+++|+| ++.  +|++|+.
T Consensus        19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~   96 (493)
T PTZ00421         19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE   96 (493)
T ss_pred             ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence            3456666777888777778777777777876554321          11224779999999999999 777  8999999


Q ss_pred             CCceEEEeCCCC-------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310          464 DKTIKVWDAVTG-------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1103)
Q Consensus       464 d~~i~iwd~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  536 (1103)
                      |++|++||+.++       .++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus        97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla  175 (493)
T PTZ00421         97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE  175 (493)
T ss_pred             CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence            999999999765       3567889999999999998753 35899999999999999999888888888999999999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCe-
Q 001310          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQ-  611 (1103)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-  611 (1103)
                      |+|+|.+|++++.    ++.|++||+++++.+..+.+|.  ......+.|.+++..+++++    .|+.|++||+++.. 
T Consensus       176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~--~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~  249 (493)
T PTZ00421        176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHA--SAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS  249 (493)
T ss_pred             EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCC--CCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence            9999999999876    6679999999999998888876  23355678899888888754    47999999998754 


Q ss_pred             eEEEEcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeEeccc-cccceeeeEEec
Q 001310          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGV-LSDNLRKLSVNP  674 (1103)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~  674 (1103)
                      .+.....+. ...+....|+++++++++++ .|+.|++|++.++..+..... ....+..+++.|
T Consensus       250 p~~~~~~d~-~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~p  313 (493)
T PTZ00421        250 PYSTVDLDQ-SSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMP  313 (493)
T ss_pred             ceeEeccCC-CCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecc
Confidence            333333322 23455677899999999887 599999999998876655433 233455555554

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=3e-23  Score=228.61  Aligned_cols=526  Identities=12%  Similarity=0.113  Sum_probs=335.4

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCc-eEEEEEcCCCceEEE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQ-ISVITCGDDKTIKVW  470 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~-~~l~s~~~d~~i~iw  470 (1103)
                      +.|-...-..-.||+|++++.....+ .|.||...+|+++.   .+.+|..++..+.+.|.... .++++++.||.|++|
T Consensus        12 lgg~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vw   87 (792)
T KOG1963|consen   12 LGGRNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVW   87 (792)
T ss_pred             eccccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEe
Confidence            44444444556799999999887554 69999999999887   78899999999999887664 478899999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeee------------cCCccEEEEEECC--CeEEEEEcCCCCee-EEecCCCccEEEE
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHA------------KENIHFIFSISVD--GKIKAWLYDSLGAR-VDYDAPGLGCTRM  535 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~------------~~~~~~l~s~~~d--g~i~iwd~~~~~~~-~~~~~~~~~i~~~  535 (1103)
                      |...+..+.++..+.. +.++.+.+            ..+-..+.+.+.+  +.++-+.+.+.... ..+......-.++
T Consensus        88 d~~~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I  166 (792)
T KOG1963|consen   88 DWSDGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSI  166 (792)
T ss_pred             cCCCcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccE
Confidence            9999999988864432 22222210            1111111111111  11111111111000 0011111113567


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE-EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--Cee
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQL  612 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~  612 (1103)
                      .+++.|.+...+.     +..+.+|+..++..... ...+..|...+++.+++|+++++++|..||.|.+|.--.  +..
T Consensus       167 ~~~~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~  241 (792)
T KOG1963|consen  167 VDNNSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDS  241 (792)
T ss_pred             EEcCCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccccc
Confidence            8888888877776     34488999887652111 111222335589999999999999999999999996433  222


Q ss_pred             EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecC
Q 001310          613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1103)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1103)
                      ...-..|-|...|.+++|+++|.+|++|+..+.+.+|.+.+++.. -+.                               
T Consensus       242 ~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kq-fLP-------------------------------  289 (792)
T KOG1963|consen  242 ETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQ-FLP-------------------------------  289 (792)
T ss_pred             ccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcc-ccc-------------------------------
Confidence            222223344567999999999999999999999999999887411 111                               


Q ss_pred             CCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccc
Q 001310          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1103)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~  772 (1103)
                                                             .-...|..+.+|||+...+....|+.|.+-........   
T Consensus       290 ---------------------------------------RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k---  327 (792)
T KOG1963|consen  290 ---------------------------------------RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIK---  327 (792)
T ss_pred             ---------------------------------------ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhh---
Confidence                                                   03467888999999999888888988888765432210   


Q ss_pred             ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEE-EcCCeEEEEEcCCceeeEEec-----CCC---
Q 001310          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS-ASGGVISLYIVMTFKTILTIM-----PPS---  843 (1103)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~-~~dg~i~iwd~~~~~~~~~~~-----~~~---  843 (1103)
                           .++.-..+.+..      . ......-.+.++++|--+.++- +-.|.|++||+.+.+.+..+.     .+.   
T Consensus       328 -----~tIsgi~~~~~~------~-k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~  395 (792)
T KOG1963|consen  328 -----STISGIKPPTPS------T-KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDV  395 (792)
T ss_pred             -----hhccCccCCCcc------c-cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcc
Confidence                 011111111000      0 0013445567888884444444 447999999998877666543     112   


Q ss_pred             ---CCeeEEEEcCCCCCEEEEEe--------CCC--eEEEEEcCCcee----EEE-eccCCCCEEEEEEcc-CCC-EEEE
Q 001310          844 ---PTATSLAFNPHDNNVIAIGM--------DDS--TILIYNARSSEV----ISK-LEGHSKRVTGLVFSD-ALN-ILVS  903 (1103)
Q Consensus       844 ---~~i~~l~~s~~d~~~lasg~--------~dg--~v~iwd~~~~~~----~~~-l~~h~~~V~~l~~s~-dg~-~l~s  903 (1103)
                         -.+++++.+. .|.+++++-        .||  .+++|-......    ... ...|...+.+.+|.+ ... .+++
T Consensus       396 n~~v~itav~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vt  474 (792)
T KOG1963|consen  396 NIQVGITAVARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVT  474 (792)
T ss_pred             eeEEeeeeehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEE
Confidence               2578888888 699999863        233  678897765432    222 235887777766654 333 7999


Q ss_pred             EeCCCeEEEEEcCCCceee-----eeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCC
Q 001310          904 SGGDAQIFVWDVDGWGIQT-----CRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISS  978 (1103)
Q Consensus       904 ~s~dg~I~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~  978 (1103)
                      ++.||.++||-+.+.+...     ..+.....-|.   .++.+++||.||..|+++.++.|.+||..+...+........
T Consensus       475 a~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k---~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~~  551 (792)
T KOG1963|consen  475 ASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHK---TPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSRN  551 (792)
T ss_pred             eccCCeEEEEEEecccccCcCccceEEeeeecccc---CcccchhhcCCCcEEEEecCCEEEEecCCChhhhhccccccc
Confidence            9999999999985432111     11222221122   378999999999999999999999999998433322233334


Q ss_pred             cCeEEEEEccCC--CEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          979 VPISQATFSCDC--RMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       979 ~~v~~l~fs~dg--~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      .++..+.|....  ...++....+.+.+|++-++.+.-.+.
T Consensus       552 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s  592 (792)
T KOG1963|consen  552 WPIAELLFTAQTQNDGALVHATQQRLSVWNLLSMSLIWNLS  592 (792)
T ss_pred             cchHhHhhhcccccccceeeccCceEehHhhhhhheecchh
Confidence            455555554321  112333456889999999988776333

>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]

Probab=99.94  E-value=2e-25  Score=250.47  Aligned_cols=279  Identities=17%  Similarity=0.243  Sum_probs=241.9

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      |...+.+..|.  +.++++++.+++|++||..++..+..  .+.||.+.|++++|..-+.  ++++|+.|.++++||..+
T Consensus       207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~s  280 (537)
T KOG0274|consen  207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCST  280 (537)
T ss_pred             Ccchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecCC
Confidence            56778888888  77899999999999999999875552  3889999999999987555  899999999999999999


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCc
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1103)
                      |+|..++.+|...|.++..    ...++++|+.|.+|++|++.++.....+.+|..+|.++..+  +.++++++.    +
T Consensus       281 g~C~~~l~gh~stv~~~~~----~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~----d  350 (537)
T KOG0274|consen  281 GECTHSLQGHTSSVRCLTI----DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY----D  350 (537)
T ss_pred             CcEEEEecCCCceEEEEEc----cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----C
Confidence            9999999999999999976    34578899999999999999999999999999999999988  889999987    5


Q ss_pred             eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCCCCCCCceEEEecC
Q 001310          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNKN  633 (1103)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~  633 (1103)
                      +.|.+||+.++++++.+.+|.   ..|.++.+... +++++|+.|++|++||+.++ +++.++..|...  +..+.  ..
T Consensus       351 ~~v~VW~~~~~~cl~sl~gH~---~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~--v~~l~--~~  422 (537)
T KOG0274|consen  351 GTVKVWDPRTGKCLKSLSGHT---GRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSL--VSSLL--LR  422 (537)
T ss_pred             ceEEEEEhhhceeeeeecCCc---ceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccc--ccccc--cc
Confidence            579999999999999999988   99999988765 89999999999999999999 899999887543  43333  45


Q ss_pred             CCEEEEEECCCeEEEEEcCCCCeeEeccc-cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310          634 GTLLAVIANENRIKILETPESNSVDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1103)
Q Consensus       634 g~~l~~~~~dg~i~iw~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1103)
                      +++|++++.|++|++||..++++++.+.+ +...+..+++.                        ...+++++.|+++++
T Consensus       423 ~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~------------------------~~~il~s~~~~~~~l  478 (537)
T KOG0274|consen  423 DNFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG------------------------KEEILCSSDDGSVKL  478 (537)
T ss_pred             cceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC------------------------cceEEEEecCCeeEE
Confidence            78999999999999999999999999988 45666555443                        355788899999999


Q ss_pred             ccccccCCc
Q 001310          713 EKPLFARPS  721 (1103)
Q Consensus       713 w~~~~~~~~  721 (1103)
                      ||+..+...
T Consensus       479 ~dl~~~~~~  487 (537)
T KOG0274|consen  479 WDLRSGTLI  487 (537)
T ss_pred             EecccCchh
Confidence            998865443

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.3e-25  Score=237.19  Aligned_cols=295  Identities=18%  Similarity=0.213  Sum_probs=238.0

Q ss_pred             cCCcCce---EEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          332 EGSSSPM---SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       332 ~h~~~V~---~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      .|...|.   ++..++.+.++|.+|+.||.|++|++........            .+ ....+..|...|..++...+|
T Consensus        19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s------------~~-~~asme~HsDWVNDiiL~~~~   85 (735)
T KOG0308|consen   19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPS------------TP-YIASMEHHSDWVNDIILCGNG   85 (735)
T ss_pred             hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcc------------cc-hhhhhhhhHhHHhhHHhhcCC
Confidence            4555666   5666655555799999999999999865433211            00 011266799999999999999


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEE-ecCCCceEEEEEcCCCceEEEeCCCCc--eeEE-----
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTGS--RTYS-----  480 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~-----  480 (1103)
                      +.|+++|.|.+|++|+...+. .....+++.|.+.|.|++. .++..  ++|+||-|+.|.+||+++|.  .+.+     
T Consensus        86 ~tlIS~SsDtTVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t  162 (735)
T KOG0308|consen   86 KTLISASSDTTVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVT  162 (735)
T ss_pred             CceEEecCCceEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccc
Confidence            999999999999999998874 1222367899999999999 66666  89999999999999999883  3322     


Q ss_pred             ---ee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310          481 ---FE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1103)
Q Consensus       481 ---~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1103)
                         +. |+...|++++.+  +.|..+++|+..+.+++||.++.+....+.+|...|..+..++||+.+++++.    +++
T Consensus       163 ~~sl~sG~k~siYSLA~N--~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----Dgt  236 (735)
T KOG0308|consen  163 VNSLGSGPKDSIYSLAMN--QTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGT  236 (735)
T ss_pred             cccCCCCCccceeeeecC--CcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----Cce
Confidence               22 788899999984  46689999999999999999999999999999999999999999999999986    778


Q ss_pred             EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001310          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  636 (1103)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~  636 (1103)
                      |++||+...+++.++..|.   ..|.++..+|+-.++++|+.||.|+.=|+.+......+-..  ..+|..+..+...+-
T Consensus       237 IrlWdLgqQrCl~T~~vH~---e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~--daPv~~l~~~~~~~~  311 (735)
T KOG0308|consen  237 IRLWDLGQQRCLATYIVHK---EGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKE--DAPVLKLHLHEHDNS  311 (735)
T ss_pred             EEeeeccccceeeeEEecc---CceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecC--CCchhhhhhccccCC
Confidence            9999999999999999988   77999999999999999999999999999885333222211  234667777755555


Q ss_pred             EEEEECCCeEEEEEcCC
Q 001310          637 LAVIANENRIKILETPE  653 (1103)
Q Consensus       637 l~~~~~dg~i~iw~~~~  653 (1103)
                      +-+++.|+.|+-|....
T Consensus       312 ~WvtTtds~I~rW~~~~  328 (735)
T KOG0308|consen  312 VWVTTTDSSIKRWKLEP  328 (735)
T ss_pred             ceeeeccccceecCCcc
Confidence            57788889999997663

>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=5.7e-25  Score=211.33  Aligned_cols=276  Identities=16%  Similarity=0.165  Sum_probs=218.1

Q ss_pred             ccCCCccEEEEEECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          392 VRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       392 ~~~h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      -...++.|.+++||| ...++++++.|++|++|+++....... .....|.++|.+++|+.||.  .+++|+.|+.+++|
T Consensus        23 ~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~-ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w   99 (347)
T KOG0647|consen   23 PNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP-KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW   99 (347)
T ss_pred             CCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc-hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence            345678999999999 556666889999999999987432222 24567999999999999998  79999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      |+.+++ +..+..|.++|..+.|.+..+-..|++||.|++|++||.+......++..++ .+.++.  --...++++.. 
T Consensus       100 DL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPe-RvYa~D--v~~pm~vVata-  174 (347)
T KOG0647|consen  100 DLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPE-RVYAAD--VLYPMAVVATA-  174 (347)
T ss_pred             EccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccc-eeeehh--ccCceeEEEec-
Confidence            999994 5667789999999999877777799999999999999999888877776554 333332  23345555554 


Q ss_pred             CCCceeEEEEeCCCCeeE-EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe--eEEEEcCCCC------
Q 001310          551 KEGESFLVEWNESEGAIK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ--LLTTIDAGGG------  621 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~------  621 (1103)
                         +..|.+|+++.+... +.....-  +..+++++...+....+.|+-+|.+.|..++.+.  .-.++..|..      
T Consensus       175 ---~r~i~vynL~n~~te~k~~~SpL--k~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~  249 (347)
T KOG0647|consen  175 ---ERHIAVYNLENPPTEFKRIESPL--KWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVND  249 (347)
T ss_pred             ---CCcEEEEEcCCCcchhhhhcCcc--cceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCC
Confidence               455999999765432 2222222  3578999999998888999999999999988763  3334444432      


Q ss_pred             -CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceee
Q 001310          622 -LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1103)
Q Consensus       622 -~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  680 (1103)
                       ...|++++|+|.-..|++++.||++.+||-.....+.....+..+|++..|+..|...+
T Consensus       250 ~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~fn~~G~ifa  309 (347)
T KOG0647|consen  250 DVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCSFNRNGSIFA  309 (347)
T ss_pred             ceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeEecCCCCEEE
Confidence             34578999999999999999999999999998888888899999999999997776654

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=1.7e-26  Score=226.82  Aligned_cols=294  Identities=11%  Similarity=0.154  Sum_probs=233.9

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      .+-+..|.||.++|.|++=+|..-..+|+|+.||.|+|||+.+..++.+                   +..|.+.|..++
T Consensus        56 kPFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~-------------------f~AH~G~V~Gi~  116 (433)
T KOG0268|consen   56 KPFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRT-------------------FKAHEGLVRGIC  116 (433)
T ss_pred             ccchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhhe-------------------eecccCceeeEE
Confidence            4455677999999999999998844689999999999999999888876                   667999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      +..  ..+++++.|.+|+.|.+...    ...++.+ ...+..+.-+..+.  .++|||.  .|.|||.....++..+.-
T Consensus       117 v~~--~~~~tvgdDKtvK~wk~~~~----p~~tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smsw  185 (433)
T KOG0268|consen  117 VTQ--TSFFTVGDDKTVKQWKIDGP----PLHTILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSW  185 (433)
T ss_pred             ecc--cceEEecCCcceeeeeccCC----cceeeec-cccccccccccccc--cccccCc--eeeecccccCCccceeec
Confidence            987  77888899999999998863    2223332 23455666555555  6888887  499999999999999988


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      ....|.++.|+|... ..|++++.|+.|.+||++.......... ....+.++|+|.+-.++++..    |..++.+|++
T Consensus       186 G~Dti~svkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~E----D~nlY~~DmR  259 (433)
T KOG0268|consen  186 GADSISSVKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAANE----DHNLYTYDMR  259 (433)
T ss_pred             CCCceeEEecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeeccc----cccceehhhh
Confidence            889999999988644 5888899999999999998877654432 224567899996666666543    6779999987


Q ss_pred             CC-eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          564 EG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       564 ~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      .- +.+..+.+|.   ..|..+.|+|.|+-+++||.|.+|+||....+..-..... .....|.++.||.|.+++++|++
T Consensus       260 ~l~~p~~v~~dhv---sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYht-kRMq~V~~Vk~S~Dskyi~SGSd  335 (433)
T KOG0268|consen  260 NLSRPLNVHKDHV---SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-KRMQHVFCVKYSMDSKYIISGSD  335 (433)
T ss_pred             hhcccchhhcccc---eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhH-hhhheeeEEEEeccccEEEecCC
Confidence            53 3455555555   9999999999999999999999999999987765433321 22346899999999999999999


Q ss_pred             CCeEEEEEcCCCCee
Q 001310          643 ENRIKILETPESNSV  657 (1103)
Q Consensus       643 dg~i~iw~~~~~~~~  657 (1103)
                      |+.|++|.....+.+
T Consensus       336 d~nvRlWka~Asekl  350 (433)
T KOG0268|consen  336 DGNVRLWKAKASEKL  350 (433)
T ss_pred             Ccceeeeecchhhhc
Confidence            999999988755443

>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.94  E-value=4.4e-25  Score=236.90  Aligned_cols=252  Identities=19%  Similarity=0.305  Sum_probs=220.8

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccC-CCccEEEEEE
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD-PGVSVNRVVW  404 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~~~~  404 (1103)
                      +......+.+.|+++.|+++|+ +||+|..+|.|.|||..+.+.+..                   +.+ |...|.+++|
T Consensus       209 v~~l~~~~~~~vtSv~ws~~G~-~LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~h~~rvg~laW  268 (484)
T KOG0305|consen  209 VTELCSFGEELVTSVKWSPDGS-HLAVGTSDGTVQIWDVKEQKKTRT-------------------LRGSHASRVGSLAW  268 (484)
T ss_pred             eEEeEecCCCceEEEEECCCCC-EEEEeecCCeEEEEehhhcccccc-------------------ccCCcCceeEEEec
Confidence            3333344488999999999999 699999999999999998887765                   556 9999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      .  +..+.+|+.++.|..+|+...+....  .+.+|...|..++|++|+.  ++++|+.|+.+.|||.....++..+..|
T Consensus       269 ~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~~~p~~~~~~H  342 (484)
T KOG0305|consen  269 N--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLSPEPKFTFTEH  342 (484)
T ss_pred             c--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCCccccEEEecc
Confidence            8  78899999999999999998875543  3789999999999999999  8999999999999999888999999999


Q ss_pred             CCceEEEEeeecCCccEEEEE--ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          485 GAPVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      .+.|.+++|+|-.. .+||+|  +.|++|++||..++....... .+..|.++.|++..+-++++...  .+..|.||+.
T Consensus       343 ~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~--s~n~i~lw~~  418 (484)
T KOG0305|consen  343 TAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGY--SENQITLWKY  418 (484)
T ss_pred             ceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCC--CCCcEEEEec
Confidence            99999999998755 478876  579999999999776655443 55689999999999888887653  3557999999


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  610 (1103)
                      .+.+.+..+.+|.   ..|..++++|||..+++|+.|.++++|++-..
T Consensus       419 ps~~~~~~l~gH~---~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~  463 (484)
T KOG0305|consen  419 PSMKLVAELLGHT---SRVLYLALSPDGETIVTGAADETLRFWNLFDE  463 (484)
T ss_pred             cccceeeeecCCc---ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence            9999999999999   88999999999999999999999999998764

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.8e-25  Score=215.06  Aligned_cols=297  Identities=14%  Similarity=0.187  Sum_probs=243.1

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ..+.+.|.||+++||.++...... ++.+++.|.+.+||.+++|.++.+                   +.||.+.|.+++
T Consensus       138 ~~lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsik  197 (481)
T KOG0300|consen  138 FRLVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIK  197 (481)
T ss_pred             EeehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEE
Confidence            356678899999999999987776 899999999999999999999986                   889999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEec------C--------C-----------------------CccccceEeccccccEEE
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYH------G--------G-----------------------SDARQQLEIDAHVGNVND  446 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~------~--------~-----------------------~~~~~~~~l~~h~~~v~~  446 (1103)
                      |++.+.++++++.|++..||...      .        +                       ....+...+.+|...|.+
T Consensus       198 fh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a  277 (481)
T KOG0300|consen  198 FHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSA  277 (481)
T ss_pred             eccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEe
Confidence            99999999999999999999721      1        0                       001124467899999999


Q ss_pred             EEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC-eeEEe
Q 001310          447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDY  525 (1103)
Q Consensus       447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~  525 (1103)
                      +.|...|+  .+++++.|.+..+||+++|..+..+.||....+.++-+|  ...++++.+.|-+.++||++..- ....+
T Consensus       278 ~dWL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHp--tQrLVvTsSrDtTFRLWDFReaI~sV~VF  353 (481)
T KOG0300|consen  278 CDWLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHP--TQRLVVTSSRDTTFRLWDFREAIQSVAVF  353 (481)
T ss_pred             hhhhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCC--cceEEEEeccCceeEeccchhhcceeeee
Confidence            99999999  699999999999999999999999999999999998876  44799999999999999998543 34478


Q ss_pred             cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001310          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1103)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  604 (1103)
                      .+|...|+++.|..|.+ +++++.    +.+|.+||+++.+ .+..+...    .+++.++.+..++.++.--++..|++
T Consensus       354 QGHtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd----S~~NRvavs~g~~iIAiPhDNRqvRl  424 (481)
T KOG0300|consen  354 QGHTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD----SPANRVAVSKGHPIIAIPHDNRQVRL  424 (481)
T ss_pred             cccccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC----CccceeEeecCCceEEeccCCceEEE
Confidence            99999999999988765 556553    7789999998754 45555542    58889999888888888888899999


Q ss_pred             EECCCCeeEEEEc---CCCCCCCCceEEEecCC--CEEEEEECCCeEEEEEcCCC
Q 001310          605 WDMNKVQLLTTID---AGGGLPENPRICFNKNG--TLLAVIANENRIKILETPES  654 (1103)
Q Consensus       605 wd~~~~~~~~~~~---~~~~~~~v~~v~~s~~g--~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      ||+..... ..++   ..++...|.|++|..+.  .-|++++-|..+.-|.+...
T Consensus       425 fDlnG~Rl-aRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p  478 (481)
T KOG0300|consen  425 FDLNGNRL-ARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP  478 (481)
T ss_pred             EecCCCcc-ccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence            99975443 3332   22344568899998653  34778888999999987643

>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=99.94  E-value=1.1e-25  Score=237.77  Aligned_cols=250  Identities=21%  Similarity=0.251  Sum_probs=212.1

Q ss_pred             CCccEE---EEEEC-CCCCEEEEEeCCCeEEEEEecCCCcc---ccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310          395 PGVSVN---RVVWS-PDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       395 h~~~V~---~~~~s-pdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i  467 (1103)
                      |...|.   ++..+ |.++||.+|+.||.|++|++......   .....+..|...|+.++...+++  .|+++|.|-+|
T Consensus        20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTV   97 (735)
T KOG0308|consen   20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTV   97 (735)
T ss_pred             ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceE
Confidence            444454   44555 46788999999999999998754321   12446788999999999999998  79999999999


Q ss_pred             EEEeCCCC--ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eE--------Eec-CCCccEEE
Q 001310          468 KVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RV--------DYD-APGLGCTR  534 (1103)
Q Consensus       468 ~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~--------~~~-~~~~~i~~  534 (1103)
                      ++|+...+  -++.++..|.+.|.++++. ..+...+++|+.|+.|.+||+.++..  ..        .+. ++...|.+
T Consensus        98 K~W~~~~~~~~c~stir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYS  176 (735)
T KOG0308|consen   98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYS  176 (735)
T ss_pred             EEeecccCcchhHhhhhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceee
Confidence            99999887  6888999999999999984 33567999999999999999997633  11        122 56668999


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE
Q 001310          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT  614 (1103)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  614 (1103)
                      ++.++.|..+++|+.    ++.|++||.++++.+..++||.   ..|..+..++||++++++|.||+|++||+...+++.
T Consensus       177 LA~N~t~t~ivsGgt----ek~lr~wDprt~~kimkLrGHT---dNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~  249 (735)
T KOG0308|consen  177 LAMNQTGTIIVSGGT----EKDLRLWDPRTCKKIMKLRGHT---DNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLA  249 (735)
T ss_pred             eecCCcceEEEecCc----ccceEEeccccccceeeeeccc---cceEEEEEcCCCCeEeecCCCceEEeeeccccceee
Confidence            999999988888876    4459999999999999999998   999999999999999999999999999999999999


Q ss_pred             EEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310          615 TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1103)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~  656 (1103)
                      ++..|..  .|+++..+|+-..+++|+.||.|..=|+.+...
T Consensus       250 T~~vH~e--~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~  289 (735)
T KOG0308|consen  250 TYIVHKE--GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAK  289 (735)
T ss_pred             eEEeccC--ceEEEeeCCCcceEEecCCCCcEEecccCCchh
Confidence            9988855  489999999999999999999999988887533

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.6e-24  Score=218.12  Aligned_cols=283  Identities=16%  Similarity=0.192  Sum_probs=244.5

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      ...+.++...|... .+.+|+.|..+.++|..+++.+..                   ++||...|+.+.|+|+...+++
T Consensus       219 ~pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~~-------------------~~Gh~kki~~v~~~~~~~~v~~  278 (506)
T KOG0289|consen  219 TPGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILAT-------------------LKGHTKKITSVKFHKDLDTVIT  278 (506)
T ss_pred             CCCeeEEeecCCCC-cceecCCCCceEEEecchhhhhhh-------------------ccCcceEEEEEEeccchhheee
Confidence            34788888888844 689999999999999999988865                   8899999999999999999999


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC--CCceEEE
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH--GAPVYSL  491 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~--~~~v~~~  491 (1103)
                      ++.|..|+||.........   ....|..+|+.+...|.|.  +|++++.|++..+.|+++|.++......  .-.+++.
T Consensus       279 aSad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~  353 (506)
T KOG0289|consen  279 ASADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSA  353 (506)
T ss_pred             cCCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEe
Confidence            9999999999998765433   5678999999999999999  8999999999999999999998776542  3457888


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      +|||  ||.++.+|..||.++|||+.+......+.+|.++|..++|+.+|-+|+++..    ++.|.+||++.-+..+++
T Consensus       354 ~fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~  427 (506)
T KOG0289|consen  354 AFHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTI  427 (506)
T ss_pred             eEcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhccccee
Confidence            8976  7789999999999999999999988999999999999999999999999986    555999999998888888


Q ss_pred             ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1103)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw  649 (1103)
                      ....  ...+.++.|.+.|.+++.++.|=.|++++-.+.  .++..+..+  ....+++.|....+++++++.|..++++
T Consensus       428 ~l~~--~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~--sg~st~v~Fg~~aq~l~s~smd~~l~~~  503 (506)
T KOG0289|consen  428 QLDE--KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADH--SGLSTGVRFGEHAQYLASTSMDAILRLY  503 (506)
T ss_pred             eccc--cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhc--ccccceeeecccceEEeeccchhheEEe
Confidence            7766  457999999999999999988777777775544  444444444  3457899999999999999999998887


Q ss_pred             Ec
Q 001310          650 ET  651 (1103)
Q Consensus       650 ~~  651 (1103)
                      .+
T Consensus       504 a~  505 (506)
T KOG0289|consen  504 AL  505 (506)
T ss_pred             ec
Confidence            54

>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]

Probab=99.94  E-value=2.7e-25  Score=228.07  Aligned_cols=292  Identities=14%  Similarity=0.273  Sum_probs=218.8

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc-cccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i  469 (1103)
                      +.+|+..|.++++.|.|.+|++|+.|.+|++||+..-.. .+.+..+. .....|.++.|++.|.++++++|  ...++|
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg--~aqakl  240 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSG--SAQAKL  240 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEec--CcceeE
Confidence            788999999999999999999999999999999976432 11111221 23346999999999996444444  557899


Q ss_pred             EeCCCCceeE-------------EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-c-----CCCc
Q 001310          470 WDAVTGSRTY-------------SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D-----APGL  530 (1103)
Q Consensus       470 wd~~~~~~~~-------------~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~-----~~~~  530 (1103)
                      +| +.|..+.             .-+||...+++.+|+|... ..+++++.||++|+||+.+.+..... .     +..-
T Consensus       241 ~D-RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k-~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv  318 (641)
T KOG0772|consen  241 LD-RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNK-EEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV  318 (641)
T ss_pred             Ec-cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcc-cceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence            99 4454332             2357999999999998754 57899999999999999876654422 1     2223


Q ss_pred             cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE--EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1103)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  608 (1103)
                      +++.++|++||+.+|++..    +|.|.+|+......-  ..+...+.....|+++.|+++|++|++-+.|+++++||++
T Consensus       319 ~~tsC~~nrdg~~iAagc~----DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLr  394 (641)
T KOG0772|consen  319 PVTSCAWNRDGKLIAAGCL----DGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLR  394 (641)
T ss_pred             CceeeecCCCcchhhhccc----CCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecc
Confidence            6899999999999998876    666999997544322  2222222123489999999999999999999999999998


Q ss_pred             CC-eeEEEEcCCCCCCCCceEEEecCCCEEEEEEC------CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeee
Q 001310          609 KV-QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  681 (1103)
Q Consensus       609 ~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  681 (1103)
                      .. +++.....-.....-..++|||+.+++++|+.      .|.+.+||..+-..+..+......|..+.|+        
T Consensus       395 q~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~Wh--------  466 (641)
T KOG0772|consen  395 QFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWH--------  466 (641)
T ss_pred             ccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeec--------
Confidence            75 34444433333345678999999999999864      4789999999988888888888888888887        


Q ss_pred             eccCCceEecCCCCCCCccceeeccccccccc
Q 001310          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVE  713 (1103)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w  713 (1103)
                                    |.-+.++.++.||+++++
T Consensus       467 --------------pkLNQi~~gsgdG~~~vy  484 (641)
T KOG0772|consen  467 --------------PKLNQIFAGSGDGTAHVY  484 (641)
T ss_pred             --------------chhhheeeecCCCceEEE
Confidence                          445556667777777664

>KOG0641 consensus WD40 repeat protein [General function prediction only]

Probab=99.94  E-value=9.8e-24  Score=193.40  Aligned_cols=299  Identities=15%  Similarity=0.209  Sum_probs=233.0

Q ss_pred             cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEec------CCCc--cc----cceEeccccccEEEEEEecCCCceEEEE
Q 001310          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH------GGSD--AR----QQLEIDAHVGNVNDLAFSAPCKQISVIT  460 (1103)
Q Consensus       393 ~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~------~~~~--~~----~~~~l~~h~~~v~~~~~s~d~~~~~l~s  460 (1103)
                      -..+..|.+++|+|.|.+.|+|++..+.+|--..      .+..  ..    ....-+.|.+.|.|.+|+|+|+  ++++
T Consensus        29 l~dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~ge--liat  106 (350)
T KOG0641|consen   29 LEDSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCGE--LIAT  106 (350)
T ss_pred             ecchhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCccC--eEEe
Confidence            3467789999999999999999999998876432      1111  01    1123356899999999999999  9999


Q ss_pred             EcCCCceEEEeCCCCcee-----EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310          461 CGDDKTIKVWDAVTGSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1103)
Q Consensus       461 ~~~d~~i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  535 (1103)
                      |++|++|++.-.+...+.     ..+.-|.+.|..++|...+                                      
T Consensus       107 gsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~--------------------------------------  148 (350)
T KOG0641|consen  107 GSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDP--------------------------------------  148 (350)
T ss_pred             cCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCC--------------------------------------
Confidence            999999999765543332     2344566666666653221                                      


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  615 (1103)
                        ...|..|++++   .++..|++-|..+|+..+.+.+|.   +.|.++ ++-++-.+++|+.|.+|++||++-..++.+
T Consensus       149 --~s~~~il~s~g---agdc~iy~tdc~~g~~~~a~sght---ghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~  219 (350)
T KOG0641|consen  149 --ESGGAILASAG---AGDCKIYITDCGRGQGFHALSGHT---GHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNT  219 (350)
T ss_pred             --CcCceEEEecC---CCcceEEEeecCCCCcceeecCCc---ccEEEE-EEecCcEEEccCCCceEEEEeeeccceeee
Confidence              12344566655   357889999999999999999998   666655 334678899999999999999999888887


Q ss_pred             EcCCCC-----CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEe
Q 001310          616 IDAGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  690 (1103)
Q Consensus       616 ~~~~~~-----~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  690 (1103)
                      +....+     ...|.+++..|.|++|++|-.|....+||+..++.++.+..|...|.++.|+                 
T Consensus       220 l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfs-----------------  282 (350)
T KOG0641|consen  220 LDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS-----------------  282 (350)
T ss_pred             ccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeC-----------------
Confidence            753321     2468899999999999999999999999999999999999999999999997                 


Q ss_pred             cCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecC
Q 001310          691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWP  764 (1103)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~  764 (1103)
                           |...++++++.|..|++-|+...-..+...+...  .|...+..+.|.|..-.+++.+.|.++.+|.++
T Consensus       283 -----p~a~yllt~syd~~ikltdlqgdla~el~~~vv~--ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  283 -----PGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVA--EHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             -----CCceEEEEecccceEEEeecccchhhcCceEEEE--eccCceEEEEecCccceeeeccCcceEEEeccC
Confidence                 6778899999999999999875433333333333  388889999999999999999999999999754

>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.94  E-value=9.6e-25  Score=221.88  Aligned_cols=250  Identities=22%  Similarity=0.287  Sum_probs=212.8

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcccc--------------ceEe-ccccccEEEEEEecCCCce
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ--------------QLEI-DAHVGNVNDLAFSAPCKQI  456 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~--------------~~~l-~~h~~~v~~~~~s~d~~~~  456 (1103)
                      ...|.-+|.+++++||+++..+++.+++|.=|++.+|...+.              ...- .+|...|.+++.|+||+  
T Consensus       138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk--  215 (479)
T KOG0299|consen  138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK--  215 (479)
T ss_pred             eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence            557999999999999999999999999999999998864311              0011 37888999999999999  


Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  536 (1103)
                      +|++|+.|..|.|||..+.+.++.+++|.+.|.+++|..  ....+++++.|+.|++|+++......++.+|...|..+.
T Consensus       216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~--gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id  293 (479)
T KOG0299|consen  216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK--GTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID  293 (479)
T ss_pred             EEEecCCCceEEEecCcccchhhcccccccceeeeeeec--CccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence            899999999999999999999999999999999999964  445799999999999999999888889999999999999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 001310          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1103)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  616 (1103)
                      ...-++.+-+++.    |.++++|++.. +....+.++.   +.+.|++|-.+ .++++|+.+|.|.+|++.+.+++.+.
T Consensus       294 aL~reR~vtVGgr----DrT~rlwKi~e-esqlifrg~~---~sidcv~~In~-~HfvsGSdnG~IaLWs~~KKkplf~~  364 (479)
T KOG0299|consen  294 ALSRERCVTVGGR----DRTVRLWKIPE-ESQLIFRGGE---GSIDCVAFIND-EHFVSGSDNGSIALWSLLKKKPLFTS  364 (479)
T ss_pred             hhcccceEEeccc----cceeEEEeccc-cceeeeeCCC---CCeeeEEEecc-cceeeccCCceEEEeeecccCceeEe
Confidence            8888888877766    66799999944 3334566666   78999999754 68999999999999999999888766


Q ss_pred             cCCCCC----------CCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          617 DAGGGL----------PENPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       617 ~~~~~~----------~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      ....+.          ..|++++..|...++++|+.+|.|++|.+.++
T Consensus       365 ~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g  412 (479)
T KOG0299|consen  365 RLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG  412 (479)
T ss_pred             eccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence            432111          15778999999999999999999999998876

>KOG0289 consensus mRNA splicing factor [General function prediction only]

Probab=99.94  E-value=1.5e-24  Score=218.24  Aligned_cols=281  Identities=17%  Similarity=0.238  Sum_probs=241.2

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  476 (1103)
                      ..+.++...|....+++|+.|.++.++|..+++.+.   .+.||...|+.+.|+|+..  .+++++.|..|+||......
T Consensus       220 pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~s  294 (506)
T KOG0289|consen  220 PGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLSS  294 (506)
T ss_pred             CCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeecccccc
Confidence            468888888888899999999999999999987666   7899999999999999998  79999999999999998888


Q ss_pred             eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC--CccEEEEEEccCCCEEEEEecCCCCc
Q 001310          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGE  554 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1103)
                      +......|..+|+.+..++  .|.||++++.||+..+.|++++.........  .-.+++.+|+|||..+.++..    +
T Consensus       295 ~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~----d  368 (506)
T KOG0289|consen  295 EPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP----D  368 (506)
T ss_pred             Cccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----C
Confidence            8888899999999999976  5579999999999999999998887655543  346899999999999998876    7


Q ss_pred             eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1103)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g  634 (1103)
                      +.+.+||+.++..+..|.+|.   ++|..++|+.+|-+++++++|+.|++||++.-+..+++...... .+.++.|.+.|
T Consensus       369 ~~vkiwdlks~~~~a~Fpght---~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SG  444 (506)
T KOG0289|consen  369 GVVKIWDLKSQTNVAKFPGHT---GPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSG  444 (506)
T ss_pred             ceEEEEEcCCccccccCCCCC---CceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCC
Confidence            779999999999999999988   99999999999999999999999999999999988888877654 78999999999


Q ss_pred             CEEEEEECCCeEEEEEcCCC--CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310          635 TLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1103)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1103)
                      .+|+.++.+=.|++++-.+.  ..+..+..|.+..+++.|.                      ...+++++++.|..+++
T Consensus       445 t~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg----------------------~~aq~l~s~smd~~l~~  502 (506)
T KOG0289|consen  445 TYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFG----------------------EHAQYLASTSMDAILRL  502 (506)
T ss_pred             CeEEeecceeEEEEEecccccceeeehhhhcccccceeeec----------------------ccceEEeeccchhheEE
Confidence            99999988766666664443  4455555666666666665                      55677888888877666


Q ss_pred             cc
Q 001310          713 EK  714 (1103)
Q Consensus       713 w~  714 (1103)
                      +.
T Consensus       503 ~a  504 (506)
T KOG0289|consen  503 YA  504 (506)
T ss_pred             ee
Confidence            53

>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]

Probab=99.93  E-value=7.1e-26  Score=222.53  Aligned_cols=285  Identities=14%  Similarity=0.224  Sum_probs=235.1

Q ss_pred             EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEE
Q 001310          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL  515 (1103)
Q Consensus       436 ~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd  515 (1103)
                      .|.||.+.|.|++=.|..-. .+++|+.||.|+|||+.+..++.++..|.+.|..+++..    ..+++++.|.+|+.|.
T Consensus        61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk  135 (433)
T KOG0268|consen   61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK  135 (433)
T ss_pred             hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence            46799999999999998632 699999999999999999999999999999999999954    5799999999999998


Q ss_pred             cCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE
Q 001310          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1103)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  595 (1103)
                      ++.. ...++. ....+..+.-+..+..+++|+.      .|.|||.....+++.+.-..   ..|.++.|+|....++.
T Consensus       136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~---Dti~svkfNpvETsILa  204 (433)
T KOG0268|consen  136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGA---DSISSVKFNPVETSILA  204 (433)
T ss_pred             ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCC---CceeEEecCCCcchhee
Confidence            7763 222322 2334556666667778888864      39999999888998888766   78999999998766554


Q ss_pred             -EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeEeccccccceeeeEEe
Q 001310          596 -AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVN  673 (1103)
Q Consensus       596 -~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~  673 (1103)
                       ++.|+.|.+||++.+.+++.+...-.   -+.++|+|++-.+++|++|..++.+|+... .++....+|...+..+.|+
T Consensus       205 s~~sDrsIvLyD~R~~~Pl~KVi~~mR---TN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs  281 (433)
T KOG0268|consen  205 SCASDRSIVLYDLRQASPLKKVILTMR---TNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS  281 (433)
T ss_pred             eeccCCceEEEecccCCccceeeeecc---ccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccC
Confidence             66999999999999999988765533   478999998888999999999999999865 5677788888888888886


Q ss_pred             cCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEee
Q 001310          674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA  753 (1103)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~  753 (1103)
                                            |-|+-+++|+.|.+||+|....+........     .....|.++.||-|.+++++|+
T Consensus       282 ----------------------ptG~EfvsgsyDksIRIf~~~~~~SRdiYht-----kRMq~V~~Vk~S~Dskyi~SGS  334 (433)
T KOG0268|consen  282 ----------------------PTGQEFVSGSYDKSIRIFPVNHGHSRDIYHT-----KRMQHVFCVKYSMDSKYIISGS  334 (433)
T ss_pred             ----------------------CCcchhccccccceEEEeecCCCcchhhhhH-----hhhheeeEEEEeccccEEEecC
Confidence                                  6788899999999999999875544433221     1456789999999999999999


Q ss_pred             cCceEEEeecCCC
Q 001310          754 SNGVHLMWRWPRN  766 (1103)
Q Consensus       754 ~dg~i~vw~~~~~  766 (1103)
                      .|+.|++|.-...
T Consensus       335 dd~nvRlWka~As  347 (433)
T KOG0268|consen  335 DDGNVRLWKAKAS  347 (433)
T ss_pred             CCcceeeeecchh
Confidence            9999999986543

>KOG0294 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=9.2e-24  Score=204.28  Aligned_cols=244  Identities=17%  Similarity=0.247  Sum_probs=204.2

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      .+..|.++|+++|.+  |.|+|+|+.|-+|+|||+.....+.   .+-.|.+.|+++.|.++-..-.|++|+.||.|.+|
T Consensus        38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw  112 (362)
T KOG0294|consen   38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW  112 (362)
T ss_pred             cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence            377899999999996  9999999999999999999876555   67789999999999988642259999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      +.....++.++++|.+.|+.++++|++  .+.++.+.|+.++.||+-.++.-........ .+.+.|+|.|.+++.++. 
T Consensus       113 ~~~~W~~~~slK~H~~~Vt~lsiHPS~--KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~~-  188 (362)
T KOG0294|consen  113 RVGSWELLKSLKAHKGQVTDLSIHPSG--KLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSGR-  188 (362)
T ss_pred             EcCCeEEeeeecccccccceeEecCCC--ceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEec-
Confidence            999999999999999999999998854  7889999999999999998887666554433 334899999999888874 


Q ss_pred             CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                          ..|-+|.+.+......+...    ..+.++.|. ++..+++|++|+.|.+||..+..+...+..|.  ..|..+.+
T Consensus       189 ----~~i~i~q~d~A~v~~~i~~~----~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~--~RVK~i~~  257 (362)
T KOG0294|consen  189 ----NKIDIYQLDNASVFREIENP----KRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHE--NRVKDIAS  257 (362)
T ss_pred             ----cEEEEEecccHhHhhhhhcc----ccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecch--hheeeeEE
Confidence                34899998877665555443    246666664 56789999999999999999988888888774  45777774


Q ss_pred             --ecCCCEEEEEECCCeEEEEEcCCC
Q 001310          631 --NKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       631 --s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                        .|++.+|++++.||.|++||+...
T Consensus       258 ~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  258 YTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             EecCCceEEEEeccCceEEEEEcccc
Confidence              467899999999999999999865

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.93  E-value=1.9e-23  Score=202.13  Aligned_cols=270  Identities=20%  Similarity=0.272  Sum_probs=214.4

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      .+.|+.|.|+|.+.. |++++.||++++||+...+....                    -.|+.++.+++|.+ ...+++
T Consensus        13 ~d~IS~v~f~~~~~~-LLvssWDgslrlYdv~~~~l~~~--------------------~~~~~plL~c~F~d-~~~~~~   70 (323)
T KOG1036|consen   13 EDGISSVKFSPSSSD-LLVSSWDGSLRLYDVPANSLKLK--------------------FKHGAPLLDCAFAD-ESTIVT   70 (323)
T ss_pred             hhceeeEEEcCcCCc-EEEEeccCcEEEEeccchhhhhh--------------------eecCCceeeeeccC-CceEEE
Confidence            579999999999885 56667999999999988754432                    23899999999997 567889


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  493 (1103)
                      |+.||.|+.+|+.++...    .+..|..+|.|+.+++...  .+++||.|++|++||.........+. ....|.++..
T Consensus        71 G~~dg~vr~~Dln~~~~~----~igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~v  143 (323)
T KOG1036|consen   71 GGLDGQVRRYDLNTGNED----QIGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMDV  143 (323)
T ss_pred             eccCceEEEEEecCCcce----eeccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEec
Confidence            999999999999998654    3678999999999998766  79999999999999988766655554 3347888865


Q ss_pred             eecCCccEEEEEECCCeEEEEEcCCCCeeEEecC--CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC----ee
Q 001310          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG----AI  567 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~----~~  567 (1103)
                          .+..|+.|+.|..+.+||+++.....+...  -.-.+.++++-|++.-.++++-    +|+|.+=.+...    ..
T Consensus       144 ----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~sk  215 (323)
T KOG1036|consen  144 ----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQSK  215 (323)
T ss_pred             ----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhhh
Confidence                556899999999999999998776553322  2337899999998887887766    444554333333    33


Q ss_pred             EEEEecccc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310          568 KRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       568 ~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      ...|+.|..      ...+|++++|+|-...+++|+.||.|.+||+.+.+.+..+...  ...|..++|+.+|..||+++
T Consensus       216 kyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia~  293 (323)
T KOG1036|consen  216 KYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIAS  293 (323)
T ss_pred             ceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEEe
Confidence            344555542      1257999999999999999999999999999999888887654  23589999999999999997


Q ss_pred             C
Q 001310          642 N  642 (1103)
Q Consensus       642 ~  642 (1103)
                      .
T Consensus       294 s  294 (323)
T KOG1036|consen  294 S  294 (323)
T ss_pred             c
Confidence            6

>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.93  E-value=1.3e-24  Score=203.41  Aligned_cols=244  Identities=15%  Similarity=0.264  Sum_probs=201.5

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLG  412 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~la  412 (1103)
                      .+.+..++||++....+++++.||+++|||+.-...                  +...++.|...|.++.|++ +++.++
T Consensus        60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~~~r~~~l  121 (311)
T KOG0277|consen   60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNTVRRRIFL  121 (311)
T ss_pred             ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccccccceeEE
Confidence            568999999998887899999999999999543221                  1122788999999999999 667788


Q ss_pred             EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEE
Q 001310          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  492 (1103)
                      +++.|++|++|+..-+..+.   ++.||...|...+|+|.... ++++++.|+++++||++..-....+..|...+.++.
T Consensus       122 tsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cd  197 (311)
T KOG0277|consen  122 TSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCD  197 (311)
T ss_pred             eeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeEEEeccceeEeec
Confidence            88999999999998876555   78999999999999998766 899999999999999986555555999999999999


Q ss_pred             eeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCe-eEE
Q 001310          493 PHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGA-IKR  569 (1103)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~-~~~  569 (1103)
                      |+.. +...+++|+.|+.|+.||++..+. ...+.+|+-.|..+.|||... .|++++.    |-++++||...+. .+.
T Consensus       198 w~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~~~~ds~~e  272 (311)
T KOG0277|consen  198 WSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDPERQDSAIE  272 (311)
T ss_pred             cccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecccccchhhhh
Confidence            9754 557999999999999999988654 557888999999999999654 5666665    7789999988543 444


Q ss_pred             EEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001310          570 TYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~  607 (1103)
                      +...|.   .-+..+.|++- +.++++.+.|+.++||+.
T Consensus       273 ~~~~Ht---EFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p  308 (311)
T KOG0277|consen  273 TVDHHT---EFVCGLDWSLFDPGQVASTGWDELLYVWNP  308 (311)
T ss_pred             hhhccc---eEEeccccccccCceeeecccccceeeecc
Confidence            555555   77888888874 568888999999999984

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.93  E-value=7.6e-21  Score=209.82  Aligned_cols=279  Identities=16%  Similarity=0.217  Sum_probs=226.4

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC-CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~  409 (1103)
                      ..|+.+-+.++|.|+|. ++.+++.||.|++|+..+. +...+                   ..-++..|.+++-  ++.
T Consensus        10 yaht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P~t-------------------i~~~g~~v~~ia~--~s~   67 (933)
T KOG1274|consen   10 YAHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEPET-------------------IDISGELVSSIAC--YSN   67 (933)
T ss_pred             hhccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCCch-------------------hhccCceeEEEee--ccc
Confidence            47888999999999999 7889999999999998776 32221                   2226677777665  456


Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceE
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  489 (1103)
                      +|++|+.+++|.+|...+++.-.   .+...+-++.+++|+.+|+  +++.||.|-.|++-+..+......+++|.++|.
T Consensus        68 ~f~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl  142 (933)
T KOG1274|consen   68 HFLTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL  142 (933)
T ss_pred             ceEEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCcee
Confidence            99999999999999999886433   3445667899999999999  899999999999999999999999999999999


Q ss_pred             EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC--------CccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1103)
                      ++.++|  ++.+|++.+.||.|++|+++++.....+..-        ...+..++|+|+|..+++...    ++.|.+|+
T Consensus       143 ~l~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~  216 (933)
T KOG1274|consen  143 QLSYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYS  216 (933)
T ss_pred             eeeEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEc
Confidence            999965  6689999999999999999988776654332        235678999999766666654    66799999


Q ss_pred             CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      ..+++....+.....+ ..+..++|+|+|.||++++.||.|.|||.++-..      |.....|.+++|.|+.+.+-...
T Consensus       217 r~~we~~f~Lr~~~~s-s~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~  289 (933)
T KOG1274|consen  217 RKGWELQFKLRDKLSS-SKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLIT  289 (933)
T ss_pred             cCCceeheeecccccc-cceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEe
Confidence            9999988888765522 3499999999999999999999999999998222      33345689999999988776666


Q ss_pred             CCCeEEEE
Q 001310          642 NENRIKIL  649 (1103)
Q Consensus       642 ~dg~i~iw  649 (1103)
                      ..|...+|
T Consensus       290 ~~g~~~~~  297 (933)
T KOG1274|consen  290 ALGTLGVS  297 (933)
T ss_pred             eccccccC
Confidence            55555444

>KOG0300 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.93  E-value=6.6e-24  Score=204.38  Aligned_cols=330  Identities=11%  Similarity=0.149  Sum_probs=238.8

Q ss_pred             eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEec
Q 001310          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1103)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  691 (1103)
                      .++.+.+|  ...|+.++.......+.+++.|.+-+||.++++.++....+|.+.|+++.|+                  
T Consensus       140 lvre~~GH--kDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh------------------  199 (481)
T KOG0300|consen  140 LVRELEGH--KDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFH------------------  199 (481)
T ss_pred             ehhhhccc--ccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEec------------------
Confidence            33444444  4568888888777789999999999999999999999999988888888887                  


Q ss_pred             CCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccc
Q 001310          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  771 (1103)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~  771 (1103)
                          +.+.++++++.|++..+|.....       ...|.......+     |.... + -. .|...+-         .+
T Consensus       200 ----~s~~L~lTaSGD~taHIW~~av~-------~~vP~~~a~~~h-----SsEeE-~-e~-sDe~~~d---------~d  251 (481)
T KOG0300|consen  200 ----NSGLLLLTASGDETAHIWKAAVN-------WEVPSNNAPSDH-----SSEEE-E-EH-SDEHNRD---------TD  251 (481)
T ss_pred             ----cccceEEEccCCcchHHHHHhhc-------CcCCCCCCCCCC-----Cchhh-h-hc-ccccccc---------cc
Confidence                45667778888888888875421       111110000000     00000 0 00 0000000         00


Q ss_pred             cccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEE
Q 001310          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA  850 (1103)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~  850 (1103)
                      +..          ...|..+...-....+|...|.+..|-..|+.+++++ |.+..+||+++++.+..+.+|..+.+.++
T Consensus       252 ~~~----------~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs  321 (481)
T KOG0300|consen  252 SSE----------KSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCS  321 (481)
T ss_pred             ccc----------ccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccc
Confidence            000          0111111111112235999999999999999999999 89999999999999999999999999999


Q ss_pred             EcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecC
Q 001310          851 FNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP  929 (1103)
Q Consensus       851 ~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  929 (1103)
                      -+| ..+++++.+.|.+.++||+... ..+..|.||.+.|+++.|.-| ..+++|+.|.+|++||+.+-.    ..+.+.
T Consensus       322 tHp-tQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMR----splATI  395 (481)
T KOG0300|consen  322 THP-TQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMR----SPLATI  395 (481)
T ss_pred             cCC-cceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeecccc----Ccceee
Confidence            999 8999999999999999999853 457889999999999999876 578899999999999998732    122222


Q ss_pred             CCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEE---EeeCCCCcCeEEEEEccCC--CEEEEEecCCcEE
Q 001310          930 DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLK---QWFPISSVPISQATFSCDC--RMVFTSFVDGTLS 1003 (1103)
Q Consensus       930 ~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~---~~~~~h~~~v~~l~fs~dg--~~l~t~~~dg~v~ 1003 (1103)
                      .-.    .++..++.+..+..||+- .+..|++||+......+   +-..+|..-|.+++|+.+-  .-|++++-|..+.
T Consensus       396 Rtd----S~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~  471 (481)
T KOG0300|consen  396 RTD----SPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA  471 (481)
T ss_pred             ecC----CccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence            221    368899999999999996 55689999998443322   1245789999999998765  3488999999999


Q ss_pred             EEeCCC
Q 001310         1004 IHEASN 1009 (1103)
Q Consensus      1004 vWd~~~ 1009 (1103)
                      -|++..
T Consensus       472 gW~in~  477 (481)
T KOG0300|consen  472 GWKINT  477 (481)
T ss_pred             eeEecc
Confidence            999864

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.92  E-value=1.6e-24  Score=201.80  Aligned_cols=252  Identities=20%  Similarity=0.340  Sum_probs=208.6

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec--CCCceEEEEEcCCCceE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIK  468 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~  468 (1103)
                      +...|+..|..+...--|++||+|+.|++|+|+.+..+.......+|.||.++|+.++|..  -|.  +|++++.||.|.
T Consensus         6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI   83 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI   83 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence            3567999999999888999999999999999999998877677789999999999999977  677  899999999999


Q ss_pred             EEeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC---eeEEecCCCccEEEEEEccC---
Q 001310          469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSAN---  540 (1103)
Q Consensus       469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~d---  540 (1103)
                      ||.-.+|+  ..+....|...|++++|.|..-|..|++++.||.|.+.+++...   .......|.-.+++++|.|.   
T Consensus        84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~  163 (299)
T KOG1332|consen   84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP  163 (299)
T ss_pred             EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence            99977774  34566789999999999999999999999999999999988762   23355677788999999986   


Q ss_pred             C-----------CEEEEEecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCC----CEEEEEeCCCcEE
Q 001310          541 G-----------RRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDDHVIK  603 (1103)
Q Consensus       541 g-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~  603 (1103)
                      |           +.|++++.    |..|.||+...++  ..+.+.+|.   +.|+.++|.|.-    .++++++.||++.
T Consensus       164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~---dwVRDVAwaP~~gl~~s~iAS~SqDg~vi  236 (299)
T KOG1332|consen  164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHK---DWVRDVAWAPSVGLPKSTIASCSQDGTVI  236 (299)
T ss_pred             ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcc---hhhhhhhhccccCCCceeeEEecCCCcEE
Confidence            5           56888876    6679999988763  334577777   999999999974    5789999999999


Q ss_pred             EEECCCC-e-eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          604 IWDMNKV-Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       604 iwd~~~~-~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      ||..... + -..++ .+.....+..+.||..|+.|++++.|+.+.+|.-.
T Consensus       237 Iwt~~~e~e~wk~tl-l~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  237 IWTKDEEYEPWKKTL-LEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EEEecCccCcccccc-cccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            9977632 1 11111 11223458899999999999999999999999754

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=1.1e-22  Score=229.22  Aligned_cols=251  Identities=12%  Similarity=0.171  Sum_probs=189.2

Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC-CCceEEEEEcCCCceEEEeCCCCc--------eeEEeecC
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS--------RTYSFEGH  484 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~--------~~~~~~~~  484 (1103)
                      |+.++.|++|+.....   ....+.+|.+.|.+++|+|+ +.  +|++|+.|++|+|||+.++.        ++..+.+|
T Consensus        50 GG~~gvI~L~~~~r~~---~v~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH  124 (568)
T PTZ00420         50 GGLIGAIRLENQMRKP---PVIKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH  124 (568)
T ss_pred             CCceeEEEeeecCCCc---eEEEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence            5567889999987653   33478899999999999997 56  89999999999999997642        34567899


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1103)
                      ...|.+++|+|.. ..++++++.|++|++||+.++.....+. +...|.+++|+|+|.+|++++.    ++.|++||+++
T Consensus       125 ~~~V~sVaf~P~g-~~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs  198 (568)
T PTZ00420        125 KKKISIIDWNPMN-YYIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK  198 (568)
T ss_pred             CCcEEEEEECCCC-CeEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence            9999999998753 2356899999999999999888766665 4568999999999999998865    56799999999


Q ss_pred             CeeEEEEecccccC--CceEEEEEcCCCCEEEEEeCCC----cEEEEECCC-CeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001310          565 GAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1103)
Q Consensus       565 ~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l  637 (1103)
                      ++.+..+.+|....  ..+....|++++.++++++.|+    .|++||++. ++++.....+.....+......++|.++
T Consensus       199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~  278 (568)
T PTZ00420        199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY  278 (568)
T ss_pred             CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence            99999998887211  1122334568999999988664    799999995 5666666555443323333334568899


Q ss_pred             EEEECCCeEEEEEcCCCCeeEecc-ccccceeeeEEecC
Q 001310          638 AVIANENRIKILETPESNSVDAAG-VLSDNLRKLSVNPI  675 (1103)
Q Consensus       638 ~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~i~~~~~~~~  675 (1103)
                      ++|..|+.|++|++..+.....-. .+..+..+++|.|.
T Consensus       279 lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~Pk  317 (568)
T PTZ00420        279 LIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFLPK  317 (568)
T ss_pred             EEEECCCeEEEEEccCCcEEeecccccCCCccceEEccc
Confidence            999999999999998763222111 13445566666653

>KOG2096 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=6.6e-23  Score=198.10  Aligned_cols=319  Identities=15%  Similarity=0.171  Sum_probs=225.2

Q ss_pred             eEEEeCCCCcee-----EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE----EecCCCccEEEEEE
Q 001310          467 IKVWDAVTGSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAY  537 (1103)
Q Consensus       467 i~iwd~~~~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~  537 (1103)
                      ++-|+....+..     ..+++|.+.|++++|  +.||.+|++++.|++|++|+++......    .....-...+.+.|
T Consensus        63 ~~~~k~~q~~f~Hpl~~~~LKgH~~~vt~~~F--sSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~F  140 (420)
T KOG2096|consen   63 NDQWKAKQPTFVHPLNVSVLKGHKKEVTDVAF--SSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVF  140 (420)
T ss_pred             hhhhcccCCCcccchhhhhhhccCCceeeeEE--cCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEE
Confidence            445555444432     456899999999999  5688999999999999999998643321    12222335678999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCC---eeE------EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310          538 SANGRRLFSCGTSKEGESFLVEWNESEG---AIK------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1103)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~---~~~------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  608 (1103)
                      +||.+-++....++   ..+++|.+...   ...      ..+.-+..|.-.+..+-...++.+|++++.|..|.+|++.
T Consensus       141 apDc~s~vv~~~~g---~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk  217 (420)
T KOG2096|consen  141 APDCKSVVVSVKRG---NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK  217 (420)
T ss_pred             CCCcceEEEEEccC---CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC
Confidence            99999887766533   35888865422   111      1111222233456667777788999999999999999998


Q ss_pred             CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310          609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1103)
Q Consensus       609 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  688 (1103)
                       |+.+..+...  ...-...+.||+|+++++++-.-.+++|..--+                                  
T Consensus       218 -Gq~L~~idtn--q~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~----------------------------------  260 (420)
T KOG2096|consen  218 -GQLLQSIDTN--QSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFT----------------------------------  260 (420)
T ss_pred             -Cceeeeeccc--cccccceeeCCCCcEEEEecCCCCceEEEEEec----------------------------------
Confidence             8888888654  234577899999999999999888999974311                                  


Q ss_pred             EecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcc
Q 001310          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL  768 (1103)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~  768 (1103)
                             .||..-      ...|++.               ..+|...|..++|+++..++++.+.||.+++||.+..-.
T Consensus       261 -------kdG~fq------ev~rvf~---------------LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~  312 (420)
T KOG2096|consen  261 -------KDGTFQ------EVKRVFS---------------LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYE  312 (420)
T ss_pred             -------cCcchh------hhhhhhe---------------eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEe
Confidence                   111110      1112222               246999999999999999999999999999999765321


Q ss_pred             ccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEec-CCCCCee
Q 001310          769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTAT  847 (1103)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~  847 (1103)
                      ..       ..+++        +.....+..........++++|+|+.||.+....++++..++++...++. .|...|.
T Consensus       313 ~~-------qDpk~--------Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is  377 (420)
T KOG2096|consen  313 AG-------QDPKI--------LKEGSAPLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTIS  377 (420)
T ss_pred             cC-------CCchH--------hhcCCcchhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCcee
Confidence            00       00111        11111111123334458999999999999999999999999998877775 4889999


Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310          848 SLAFNPHDNNVIAIGMDDSTILIYN  872 (1103)
Q Consensus       848 ~l~~s~~d~~~lasg~~dg~v~iwd  872 (1103)
                      +++|++ +|+++++++ |..+++..
T Consensus       378 ~is~~~-~g~~~atcG-dr~vrv~~  400 (420)
T KOG2096|consen  378 SISYSS-DGKYIATCG-DRYVRVIR  400 (420)
T ss_pred             eEEecC-CCcEEeeec-ceeeeeec
Confidence            999999 999999887 67788775

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=99.92  E-value=3e-23  Score=221.30  Aligned_cols=275  Identities=15%  Similarity=0.214  Sum_probs=220.3

Q ss_pred             ccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeE-EE
Q 001310          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FA  809 (1103)
Q Consensus       731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~  809 (1103)
                      .+|...|..+++.+.. .+++++.||++++|+-.....                      +...  ...++.+-|.+ ++
T Consensus        11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~----------------------l~~~--~~~~~~g~i~~~i~   65 (745)
T KOG0301|consen   11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY----------------------LETH--AFEGPKGFIANSIC   65 (745)
T ss_pred             ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc----------------------ccce--ecccCcceeeccce
Confidence            4588888888876554 689999999999997322111                      1101  11135666665 77


Q ss_pred             Eec-CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC
Q 001310          810 LSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK  887 (1103)
Q Consensus       810 ~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~  887 (1103)
                      +.+ ++-.+++|+ |.+|.+|.......+.++.+|...|.++.... ++. +++|+.|.++++|-.  +++...+.+|+.
T Consensus        66 y~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~a  141 (745)
T KOG0301|consen   66 YAESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTA  141 (745)
T ss_pred             eccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcch
Confidence            764 444466666 89999999999999999999999999999887 665 999999999999965  466677999999


Q ss_pred             CEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCc
Q 001310          888 RVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1103)
Q Consensus       888 ~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~  967 (1103)
                      .|+++++-|++ .++|||.|++|++|.-.+       .++++.||..   -|+.+++-+++.+|-++.||.|++|++ +|
T Consensus       142 sVWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHtD---~VRgL~vl~~~~flScsNDg~Ir~w~~-~g  209 (745)
T KOG0301|consen  142 SVWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHTD---CVRGLAVLDDSHFLSCSNDGSIRLWDL-DG  209 (745)
T ss_pred             heeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccchh---heeeeEEecCCCeEeecCCceEEEEec-cC
Confidence            99999999987 889999999999998755       7788999887   899999999999999999999999999 68


Q ss_pred             eEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEE
Q 001310          968 TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAI 1047 (1103)
Q Consensus       968 ~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 1047 (1103)
                      +++.+ ..+|..-|.++....++..++++++|+++++|+..  ++.+.+.    +|               +-.|++..+
T Consensus       210 e~l~~-~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~----lP---------------ttsiWsa~~  267 (745)
T KOG0301|consen  210 EVLLE-MHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVIT----LP---------------TTSIWSAKV  267 (745)
T ss_pred             ceeee-eeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEe----cC---------------ccceEEEEE
Confidence            88887 66899999999999999999999999999999988  5555555    11               112554333


Q ss_pred             EECCCCCcEEEEEecCCcEEEEccC
Q 001310         1048 AAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1048 ~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                      -.+    ..+++|+.||.|+||...
T Consensus       268 L~N----gDIvvg~SDG~VrVfT~~  288 (745)
T KOG0301|consen  268 LLN----GDIVVGGSDGRVRVFTVD  288 (745)
T ss_pred             eeC----CCEEEeccCceEEEEEec
Confidence            333    348999999999999874

>KOG1963 consensus WD40 repeat protein [General function prediction only]

Probab=99.92  E-value=4.7e-21  Score=211.47  Aligned_cols=514  Identities=16%  Similarity=0.182  Sum_probs=322.7

Q ss_pred             cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCc-cEEEEEECCCeEEEEEcC
Q 001310          439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYD  517 (1103)
Q Consensus       439 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~  517 (1103)
                      |-...-....||+|++.  ++.+. +..|.||...||.++..+.+|..++.++.+.+.+.. .++++++.||.|++||..
T Consensus        14 g~n~~~~~avfSnD~k~--l~~~~-~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~   90 (792)
T KOG1963|consen   14 GRNGNKSPAVFSNDAKF--LFLCT-GNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS   90 (792)
T ss_pred             cccceecccccccCCcE--EEEee-CCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence            33333445579999994  44333 558999999999999999999999999999877654 678899999999999999


Q ss_pred             CCCeeEEecCCCccEEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCCCeeE-----EEEecccc----cCCceEEEE
Q 001310          518 SLGARVDYDAPGLGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESEGAIK-----RTYQGLQL----QHNSVSVVH  585 (1103)
Q Consensus       518 ~~~~~~~~~~~~~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~~~~~-----~~~~~~~~----~~~~v~~~~  585 (1103)
                      .+....++..... +..+.+.|   +....+..+.  +....+...........     .++..+..    ....-..+.
T Consensus        91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~--~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~  167 (792)
T KOG1963|consen   91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSV--EDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIV  167 (792)
T ss_pred             CcEEEEEEecCCc-eeEEEechhHhCccceeEeec--ccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEE
Confidence            9888777665433 32333322   1111221111  00000111111111111     11111110    001135677


Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeEEEE--cCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccc
Q 001310          586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL  663 (1103)
Q Consensus       586 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  663 (1103)
                      +++.+.+....- +..+.+|...++......  ....+...++++++||+++++|++..||.|.+|.--..      ...
T Consensus       168 ~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~------~~~  240 (792)
T KOG1963|consen  168 DNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGS------SDD  240 (792)
T ss_pred             EcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccc------ccc
Confidence            777776655544 566888988875511111  01122334789999999999999999999999974421      000


Q ss_pred             ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEe
Q 001310          664 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN  743 (1103)
Q Consensus       664 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  743 (1103)
                      ...                                         .++.=|                   |...|.+++|+
T Consensus       241 ~~t-----------------------------------------~t~lHW-------------------H~~~V~~L~fS  260 (792)
T KOG1963|consen  241 SET-----------------------------------------CTLLHW-------------------HHDEVNSLSFS  260 (792)
T ss_pred             ccc-----------------------------------------ceEEEe-------------------cccccceeEEe
Confidence            000                                         011112                   66789999999


Q ss_pred             cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-C
Q 001310          744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G  822 (1103)
Q Consensus       744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d  822 (1103)
                      ++|.+|++|+..|.+.+|.+.+++.                      ..   ++  .-.++|..+.+|||+.+.+... |
T Consensus       261 ~~G~~LlSGG~E~VLv~Wq~~T~~k----------------------qf---LP--RLgs~I~~i~vS~ds~~~sl~~~D  313 (792)
T KOG1963|consen  261 SDGAYLLSGGREGVLVLWQLETGKK----------------------QF---LP--RLGSPILHIVVSPDSDLYSLVLED  313 (792)
T ss_pred             cCCceEeecccceEEEEEeecCCCc----------------------cc---cc--ccCCeeEEEEEcCCCCeEEEEecC
Confidence            9999999999999999998765432                      11   11  1578999999999998887775 8


Q ss_pred             CeEEEEEcCCceeeEEecC---C--------CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec--------
Q 001310          823 GVISLYIVMTFKTILTIMP---P--------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE--------  883 (1103)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~---~--------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~--------  883 (1103)
                      +.|.+....+.....++.+   .        .+-.+.++++| .-+.++..+..|.|.+||+.+.+.+..+.        
T Consensus       314 NqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~  392 (792)
T KOG1963|consen  314 NQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSD  392 (792)
T ss_pred             ceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccC
Confidence            9999888766555444433   2        23457789999 67788889999999999999877665543        


Q ss_pred             ---cCCCCEEEEEEccCCCEEEEEeC--------CC--eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEE-cCCCC
Q 001310          884 ---GHSKRVTGLVFSDALNILVSSGG--------DA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF-HKDQT  949 (1103)
Q Consensus       884 ---~h~~~V~~l~~s~dg~~l~s~s~--------dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f-s~dg~  949 (1103)
                         .+.-.+++++.+-.|.+++|.-.        ||  .+++|-.................|..   .+...+| ++...
T Consensus       393 ~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~---~~vat~~~~~~rs  469 (792)
T KOG1963|consen  393 GDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGN---AFVATIFLNPTRS  469 (792)
T ss_pred             CcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCc---eeEEEEEecCccc
Confidence               12335788888989999998742        33  47889776644322211122222221   3333333 33333


Q ss_pred             -EEEE-EeCCeEEEEECCCc----------eEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC-ceeEEee
Q 001310          950 -RFLL-VHETHLAIYEAEEL----------TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRI 1016 (1103)
Q Consensus       950 -~l~~-~~d~~v~iwd~~~~----------~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~-~~~~~~~ 1016 (1103)
                       ..++ +.||.+++|-..+.          .|... -..|..++++++||.||..|++ +.|++|.+||..+ .++.+..
T Consensus       470 ~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i-~sy~k~~i~a~~fs~dGslla~-s~~~~Itiwd~~~~~~l~~~~  547 (792)
T KOG1963|consen  470 VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAI-GSYHKTPITALCFSQDGSLLAV-SFDDTITIWDYDTKNELLCTE  547 (792)
T ss_pred             ceeEEeccCCeEEEEEEecccccCcCccceEEeee-eccccCcccchhhcCCCcEEEE-ecCCEEEEecCCChhhhhccc
Confidence             4555 59999999998332          22221 2247899999999999977665 5788999999999 6666555


Q ss_pred             ccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCCCC
Q 001310         1017 LSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1078 (1103)
Q Consensus      1017 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~~w 1078 (1103)
                      ....+--      +.+|         +   .+-.+.  .........+.+.+|++....-.|
T Consensus       548 ~~~~~~~------~~~~---------~---~~~~~~--~~~~~~~~~~~l~~WNll~~~l~w  589 (792)
T KOG1963|consen  548 GSRNWPI------AELL---------F---TAQTQN--DGALVHATQQRLSVWNLLSMSLIW  589 (792)
T ss_pred             cccccch------HhHh---------h---hccccc--ccceeeccCceEehHhhhhhheec
Confidence            5222111      0011         0   011111  122233456789999998777777

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.92  E-value=1.4e-23  Score=214.09  Aligned_cols=265  Identities=16%  Similarity=0.246  Sum_probs=211.9

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC-CC
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GS  409 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~  409 (1103)
                      -.|.++|..+.+-|....++|+++..+.|.|||..+-.-....      .+.|   .....+.||+..=..++|++. .-
T Consensus       121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~------~~~~---~Pdl~L~gH~~eg~glsWn~~~~g  191 (422)
T KOG0264|consen  121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA------SGEC---RPDLRLKGHEKEGYGLSWNRQQEG  191 (422)
T ss_pred             ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc------cccC---CCceEEEeecccccccccccccce
Confidence            4688999999999999889999999999999998764322210      0001   122348899988888999994 55


Q ss_pred             EEEEEeCCCeEEEEEecCCCc----cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC--CCceeEEeec
Q 001310          410 LLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV--TGSRTYSFEG  483 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~--~~~~~~~~~~  483 (1103)
                      +|++++.|++|++||+.....    +.....+.+|...|..++|++-... ++++++.|+.+.|||++  +.++.....+
T Consensus       192 ~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~~~~a  270 (422)
T KOG0264|consen  192 TLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSHSVKA  270 (422)
T ss_pred             eEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcccccc
Confidence            789999999999999976543    5566678999999999999998776 79999999999999999  5666778899


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      |.+.|.+++|+|. ++..||+||.|++|.+||+++... ...+..|...|..+.|||....+++.+.   .++.+.+||+
T Consensus       271 h~~~vn~~~fnp~-~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg---~D~rl~vWDl  346 (422)
T KOG0264|consen  271 HSAEVNCVAFNPF-NEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSG---TDRRLNVWDL  346 (422)
T ss_pred             cCCceeEEEeCCC-CCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecc---cCCcEEEEec
Confidence            9999999999987 468999999999999999998664 5588999999999999997665554432   2778999998


Q ss_pred             CCCeeE-----------EEEecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001310          563 SEGAIK-----------RTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK  609 (1103)
Q Consensus       563 ~~~~~~-----------~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~  609 (1103)
                      ..-...           ..+-.|.+|...|..+.|+|+..++++ .++|+.+.||.+..
T Consensus       347 s~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~  405 (422)
T KOG0264|consen  347 SRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE  405 (422)
T ss_pred             cccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence            743222           123334445599999999999887655 88999999999863

>KOG1274 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=5.3e-20  Score=203.23  Aligned_cols=278  Identities=13%  Similarity=0.178  Sum_probs=233.4

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC-CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      .|...-+.++|.|+|.+|.+++.||.|++|+.... +...   .+.-+...|.+++...  .  .|++|+.+++|.+|..
T Consensus        11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~---ti~~~g~~v~~ia~~s--~--~f~~~s~~~tv~~y~f   83 (933)
T KOG1274|consen   11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPE---TIDISGELVSSIACYS--N--HFLTGSEQNTVLRYKF   83 (933)
T ss_pred             hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCc---hhhccCceeEEEeecc--c--ceEEeeccceEEEeeC
Confidence            58899999999999999999999999999998776 2222   3333777888887643  4  6999999999999999


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      ..++.-..+....-+++.+++  +.+|.+++.||.|-.|++-+..+......+.+|..+|.++.|+|++++||+.+.   
T Consensus        84 ps~~~~~iL~Rftlp~r~~~v--~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~---  158 (933)
T KOG1274|consen   84 PSGEEDTILARFTLPIRDLAV--SGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSC---  158 (933)
T ss_pred             CCCCccceeeeeeccceEEEE--ecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEec---
Confidence            988876666667788999998  457789999999999999999999999999999999999999999999999876   


Q ss_pred             CceeEEEEeCCCCeeEEEEeccccc-----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          553 GESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                       +|.|++||+.++.+...+.+-...     ...+..++|+|++..++..+.|+.|++|+..+.+....+........+..
T Consensus       159 -dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~  237 (933)
T KOG1274|consen  159 -DGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSD  237 (933)
T ss_pred             -CceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEE
Confidence             677999999999887776654321     23467789999999999999999999999999999988877655555889


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  688 (1103)
                      +.|+|+|+|||+++.+|.|.|||.++..    .......|.+++|.|....+..-...+..
T Consensus       238 ~~wsPnG~YiAAs~~~g~I~vWnv~t~~----~~~~~~~Vc~~aw~p~~n~it~~~~~g~~  294 (933)
T KOG1274|consen  238 LQWSPNGKYIAASTLDGQILVWNVDTHE----RHEFKRAVCCEAWKPNANAITLITALGTL  294 (933)
T ss_pred             EEEcCCCcEEeeeccCCcEEEEecccch----hccccceeEEEecCCCCCeeEEEeecccc
Confidence            9999999999999999999999999722    14456778999999988777655444433

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=4.1e-23  Score=211.04  Aligned_cols=282  Identities=12%  Similarity=0.173  Sum_probs=225.8

Q ss_pred             ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  812 (1103)
                      |..-|.++++|...+.+.+++. |.|+|||+.....     .   .+           ...  +.-....+.|+++.+.|
T Consensus       418 HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~-----k---~P-----------vsq--Ldcl~rdnyiRSckL~p  475 (705)
T KOG0639|consen  418 HGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGN-----K---SP-----------VSQ--LDCLNRDNYIRSCKLLP  475 (705)
T ss_pred             cCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCC-----C---Cc-----------ccc--ccccCcccceeeeEecC
Confidence            7888899999999998887765 5899999875421     0   00           111  11112567889999999


Q ss_pred             CCCEEEEEcC-CeEEEEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCE
Q 001310          813 NDAYLFSASG-GVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  889 (1103)
Q Consensus       813 d~~~l~~~~d-g~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V  889 (1103)
                      ||+.|++|+. .++.|||+......  .++........+++.+| |.++.+++..||.|.|||+.+...++.|.||.+.+
T Consensus       476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa  554 (705)
T KOG0639|consen  476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA  554 (705)
T ss_pred             CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence            9999999985 78999999865443  33444445678899999 89999999999999999999999999999999999


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCce
Q 001310          890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT  968 (1103)
Q Consensus       890 ~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~  968 (1103)
                      .||.+++||..|-||+-|.+|+.||+..+....     ...    +...|.++..+|.+.+|++| .++.+.|..+...+
T Consensus       555 scIdis~dGtklWTGGlDntvRcWDlregrqlq-----qhd----F~SQIfSLg~cP~~dWlavGMens~vevlh~skp~  625 (705)
T KOG0639|consen  555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQ-----QHD----FSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPE  625 (705)
T ss_pred             eeEEecCCCceeecCCCccceeehhhhhhhhhh-----hhh----hhhhheecccCCCccceeeecccCcEEEEecCCcc
Confidence            999999999999999999999999999866322     111    11368999999999999998 67788888877554


Q ss_pred             EEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEE
Q 001310          969 CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIA 1048 (1103)
Q Consensus       969 ~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1048 (1103)
                      .-.  +..|...|.++.|++.|+++++.+.|.-+-.|.+.-|..+....                    -.+.|.+.+++
T Consensus       626 kyq--lhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk--------------------E~SsVlsCDIS  683 (705)
T KOG0639|consen  626 KYQ--LHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK--------------------ESSSVLSCDIS  683 (705)
T ss_pred             cee--ecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc--------------------ccCcceeeeec
Confidence            433  45689999999999999999999999999999999887765544                    12336667777


Q ss_pred             ECCCCCcEEEEEecCCcEEEEcc
Q 001310         1049 AHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1049 ~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      ++   ..++|||+.|..-.||++
T Consensus       684 ~d---dkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  684 FD---DKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cC---ceEEEecCCCcceEEEEE
Confidence            76   789999999988888876

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.91  E-value=2.3e-22  Score=204.43  Aligned_cols=289  Identities=15%  Similarity=0.225  Sum_probs=222.5

Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC
Q 001310          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES  654 (1103)
Q Consensus       578 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iw~~~~~  654 (1103)
                      .+.|+++.|+|....+++++.||+++||.+...  ..++.+...  ..+|.+.+|.|+|. .+++++....++.||+.+.
T Consensus       213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a  290 (514)
T KOG2055|consen  213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA  290 (514)
T ss_pred             cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccc
Confidence            368999999999999999999999999988643  344555443  45789999999999 8888888889999998765


Q ss_pred             CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcccc
Q 001310          655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  734 (1103)
Q Consensus       655 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  734 (1103)
                      +....-.                                  +                                      
T Consensus       291 k~~k~~~----------------------------------~--------------------------------------  298 (514)
T KOG2055|consen  291 KVTKLKP----------------------------------P--------------------------------------  298 (514)
T ss_pred             ccccccC----------------------------------C--------------------------------------
Confidence            3221100                                  0                                      


Q ss_pred             ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~  814 (1103)
                                .                                          |.           ....+..+.+||++
T Consensus       299 ----------~------------------------------------------g~-----------e~~~~e~FeVShd~  315 (514)
T KOG2055|consen  299 ----------Y------------------------------------------GV-----------EEKSMERFEVSHDS  315 (514)
T ss_pred             ----------C------------------------------------------Cc-----------ccchhheeEecCCC
Confidence                      0                                          00           12234456677777


Q ss_pred             CEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC-CEEEE
Q 001310          815 AYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGL  892 (1103)
Q Consensus       815 ~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l  892 (1103)
                      ++|+..+ .|.|.+....+++.+..++ -.+.|..++|+. |++.|.+.+.+|.|++||+....++.++....+ .-+++
T Consensus       316 ~fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~  393 (514)
T KOG2055|consen  316 NFIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSL  393 (514)
T ss_pred             CeEEEcccCceEEeehhhhhhhhheee-eccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeee
Confidence            7887776 5788888888888888776 567899999998 888888899999999999999999888874221 23568


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEcCCCce-eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE---eCCeEEEEECCCce
Q 001310          893 VFSDALNILVSSGGDAQIFVWDVDGWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---HETHLAIYEAEELT  968 (1103)
Q Consensus       893 ~~s~dg~~l~s~s~dg~I~iwd~~~~~~-~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~---~d~~v~iwd~~~~~  968 (1103)
                      +.|++|.+||+|+..|.|.|||.++.-. ...+++.......   ..|++++|++|+++||++   ....+++..+.+..
T Consensus       394 ~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~T  470 (514)
T KOG2055|consen  394 CISLNGSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCT  470 (514)
T ss_pred             eecCCCceEEeccCcceEEEeccchhhccCCCCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEecccee
Confidence            8889999999999999999999776221 1122333333333   379999999999999984   56789999999887


Q ss_pred             EEEEeeCCC--CcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          969 CLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       969 ~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      ....|....  -+.|++++|||.|.+||+|..+|.|.+|.+.
T Consensus       471 VFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~  512 (514)
T KOG2055|consen  471 VFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH  512 (514)
T ss_pred             eeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence            776654432  4678999999999999999999999999874

>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]

Probab=99.91  E-value=4.1e-23  Score=211.08  Aligned_cols=287  Identities=14%  Similarity=0.179  Sum_probs=228.1

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .|..-|.++++|...+ .+.+|+. |-|+|||+.......              +....-......-|+++.++|||+.|
T Consensus       417 ~HGEvVcAvtIS~~tr-hVyTgGk-gcVKVWdis~pg~k~--------------PvsqLdcl~rdnyiRSckL~pdgrtL  480 (705)
T KOG0639|consen  417 AHGEVVCAVTISNPTR-HVYTGGK-GCVKVWDISQPGNKS--------------PVSQLDCLNRDNYIRSCKLLPDGRTL  480 (705)
T ss_pred             ccCcEEEEEEecCCcc-eeEecCC-CeEEEeeccCCCCCC--------------ccccccccCcccceeeeEecCCCceE
Confidence            5777889999999988 5888877 889999996542110              11110012245789999999999999


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  491 (1103)
                      ++|+.-.++.|||+..... +....+..-.-...+++.+||.+  +.+++..||.|.|||+.....++.|+||.+.+.||
T Consensus       481 ivGGeastlsiWDLAapTp-rikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascI  557 (705)
T KOG0639|consen  481 IVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI  557 (705)
T ss_pred             EeccccceeeeeeccCCCc-chhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCCCceeE
Confidence            9999999999999987542 22223333334567889999999  89999999999999999999999999999999999


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      .+  +++|..|.+|+-|++||.||++.+....... ....|.++.++|.+.+|++|-.    ++.+.+..... .....+
T Consensus       558 di--s~dGtklWTGGlDntvRcWDlregrqlqqhd-F~SQIfSLg~cP~~dWlavGMe----ns~vevlh~sk-p~kyql  629 (705)
T KOG0639|consen  558 DI--SKDGTKLWTGGLDNTVRCWDLREGRQLQQHD-FSSQIFSLGYCPTGDWLAVGME----NSNVEVLHTSK-PEKYQL  629 (705)
T ss_pred             Ee--cCCCceeecCCCccceeehhhhhhhhhhhhh-hhhhheecccCCCccceeeecc----cCcEEEEecCC-ccceee
Confidence            88  5688999999999999999999876655433 2347889999999999999976    44466665433 333444


Q ss_pred             ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      ..|.   ..|.++.|.+.|+++++.+.|+.+..|...-|..+.....   ...|.++.+|.|.+++++|+.|..-.+|.+
T Consensus       630 hlhe---ScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  630 HLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             cccc---cEEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            4455   8999999999999999999999999999998887766643   356899999999999999999988888764

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=9.9e-21  Score=207.74  Aligned_cols=279  Identities=17%  Similarity=0.231  Sum_probs=201.7

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeEeccccccceee
Q 001310          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRK  669 (1103)
Q Consensus       591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~  669 (1103)
                      ..+++++.|+.|++||+.+++.+..+..+.   .+..++|+|+++.+ ++++.++.|++||..+++....+..       
T Consensus         2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~-------   71 (300)
T TIGR03866         2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPS-------   71 (300)
T ss_pred             cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccC-------
Confidence            467889999999999999999888887543   35789999999876 5566788999998776532211100       


Q ss_pred             eEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEE
Q 001310          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1103)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  749 (1103)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (300)
T TIGR03866        72 --------------------------------------------------------------------------------   71 (300)
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEE
Q 001310          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISL  827 (1103)
Q Consensus       750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~i  827 (1103)
                                                                         + ..+..++++|+++.+++++  ++.+++
T Consensus        72 ---------------------------------------------------~-~~~~~~~~~~~g~~l~~~~~~~~~l~~   99 (300)
T TIGR03866        72 ---------------------------------------------------G-PDPELFALHPNGKILYIANEDDNLVTV   99 (300)
T ss_pred             ---------------------------------------------------C-CCccEEEECCCCCEEEEEcCCCCeEEE
Confidence                                                               0 0122455667776555442  577888


Q ss_pred             EEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEE-e
Q 001310          828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS-G  905 (1103)
Q Consensus       828 wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~-s  905 (1103)
                      ||+.+++.+..+.. ...+.+++|+| ++++++++..++ .+.+||..+++....+.. ...+.+++|+|++++|+.+ .
T Consensus       100 ~d~~~~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~  176 (300)
T TIGR03866       100 IDIETRKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE  176 (300)
T ss_pred             EECCCCeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC
Confidence            88887777666652 33467899999 888999888775 567889998877665442 2346789999999988644 4


Q ss_pred             CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE--EeCCeEEEEECCCceEEEEeeCCCCcCeEE
Q 001310          906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--VHETHLAIYEAEELTCLKQWFPISSVPISQ  983 (1103)
Q Consensus       906 ~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~  983 (1103)
                      .++.|++||+.+++............+. .......++|+|||+++++  +.++.+.+||..+++.+....  +...+.+
T Consensus       177 ~~~~v~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~  253 (300)
T TIGR03866       177 IGGTVSVIDVATRKVIKKITFEIPGVHP-EAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQ  253 (300)
T ss_pred             CCCEEEEEEcCcceeeeeeeeccccccc-ccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcce
Confidence            6999999999987654322221111010 0113457899999998665  356789999999988876543  3457899


Q ss_pred             EEEccCCCEEEEE-ecCCcEEEEeCCCceeEEeec
Q 001310          984 ATFSCDCRMVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       984 l~fs~dg~~l~t~-~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ++|+|||++|+++ +.++.|++||+.+++.+.++.
T Consensus       254 ~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~  288 (300)
T TIGR03866       254 LAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIK  288 (300)
T ss_pred             EEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence            9999999999876 468999999999999988887

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.91  E-value=4.4e-23  Score=192.22  Aligned_cols=255  Identities=16%  Similarity=0.213  Sum_probs=204.4

Q ss_pred             ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--
Q 001310          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--  406 (1103)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--  406 (1103)
                      +-.+|.+-|..+...--|++ ||+++.|++|+|+.+++.....-                ...|.||+++|..++|..  
T Consensus         6 idt~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~l----------------l~~L~Gh~GPVwqv~wahPk   68 (299)
T KOG1332|consen    6 IDTQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSKL----------------LAELTGHSGPVWKVAWAHPK   68 (299)
T ss_pred             hhhhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCcee----------------eeEecCCCCCeeEEeecccc
Confidence            44689999999999888984 89999999999999987654211                112889999999999987  


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC---ceeEEeec
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEG  483 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~  483 (1103)
                      -|.+||+++.||.|.||.-++| ...+......|...|++++|.|.+-.+.|++++.||.|.|.+.+..   ........
T Consensus        69 ~G~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a  147 (299)
T KOG1332|consen   69 FGTILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA  147 (299)
T ss_pred             cCcEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc
Confidence            8999999999999999999988 4445556778999999999999988889999999999999987654   22344578


Q ss_pred             CCCceEEEEeeecCC-c-----------cEEEEEECCCeEEEEEcCCCCe--eEEecCCCccEEEEEEccCC----CEEE
Q 001310          484 HGAPVYSLCPHAKEN-I-----------HFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG----RRLF  545 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~-~-----------~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~dg----~~l~  545 (1103)
                      |.-.|+++++.|..- |           ..|++|+.|+.|+||+.++..-  ...+..|...|+.++|.|.-    .+++
T Consensus       148 H~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iA  227 (299)
T KOG1332|consen  148 HEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIA  227 (299)
T ss_pred             cccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeE
Confidence            999999999977521 1           5699999999999999988642  23578889999999999964    4688


Q ss_pred             EEecCCCCceeEEEEeCCCC--ee-EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310          546 SCGTSKEGESFLVEWNESEG--AI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~--~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  608 (1103)
                      +++.    ++.+.||-....  .. ...+...   ...+..+.|+..|+.|+.++.|+.|.+|.-.
T Consensus       228 S~Sq----Dg~viIwt~~~e~e~wk~tll~~f---~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~  286 (299)
T KOG1332|consen  228 SCSQ----DGTVIIWTKDEEYEPWKKTLLEEF---PDVVWRVSWSLSGNILAVSGGDNKVTLWKEN  286 (299)
T ss_pred             EecC----CCcEEEEEecCccCcccccccccC---CcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence            8875    667999976522  11 1122222   2679999999999999999999999999754

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.91  E-value=4.7e-21  Score=210.34  Aligned_cols=289  Identities=11%  Similarity=0.054  Sum_probs=212.0

Q ss_pred             EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE-EEEeCCCeEEEEEecC
Q 001310          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYHG  427 (1103)
Q Consensus       349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~iwd~~~  427 (1103)
                      ++++++.|+.|++||+.+++.+..                   +.+| ..+.+++|+|||+.+ ++++.++.|++||..+
T Consensus         3 ~~~s~~~d~~v~~~d~~t~~~~~~-------------------~~~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~   62 (300)
T TIGR03866         3 AYVSNEKDNTISVIDTATLEVTRT-------------------FPVG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLAT   62 (300)
T ss_pred             EEEEecCCCEEEEEECCCCceEEE-------------------EECC-CCCCceEECCCCCEEEEEECCCCeEEEEECCC
Confidence            788999999999999999887654                   3333 346789999999987 5667889999999998


Q ss_pred             CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC
Q 001310          428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV  507 (1103)
Q Consensus       428 ~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~  507 (1103)
                      ++...   .+..+.. +..++|+|+++. ++++++.|+.|++||+.+++.+..+.. ...+.+++++  +++.++++++.
T Consensus        63 ~~~~~---~~~~~~~-~~~~~~~~~g~~-l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~--~dg~~l~~~~~  134 (300)
T TIGR03866        63 GEVIG---TLPSGPD-PELFALHPNGKI-LYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVS--PDGKIVVNTSE  134 (300)
T ss_pred             CcEEE---eccCCCC-ccEEEECCCCCE-EEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEEC--CCCCEEEEEec
Confidence            86544   3333333 567899999984 345556789999999999888877753 3345677775  47778888887


Q ss_pred             CC-eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc----cCCceE
Q 001310          508 DG-KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVS  582 (1103)
Q Consensus       508 dg-~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~  582 (1103)
                      ++ .+.+||..+......... ......++|+|+|+++++++.   .++.|++||+.+++.+..+..+..    ......
T Consensus       135 ~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~---~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~  210 (300)
T TIGR03866       135 TTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSE---IGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPV  210 (300)
T ss_pred             CCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcC---CCCEEEEEEcCcceeeeeeeecccccccccCCcc
Confidence            65 567789877665443332 234567899999999876542   256799999999988776653210    011235


Q ss_pred             EEEEcCCCCEEEE-EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeEec
Q 001310          583 VVHFDTAKDQILA-AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAA  660 (1103)
Q Consensus       583 ~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~  660 (1103)
                      .++|+|+++++++ .+.++.+.+||..+++.+..+...   ..+.+++|+|+|++|+++ ..++.|.+||..+++.+..+
T Consensus       211 ~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~  287 (300)
T TIGR03866       211 GIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVG---QRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSI  287 (300)
T ss_pred             ceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeC---CCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence            6889999998655 455678999999998877665432   247899999999999886 45899999999999888877


Q ss_pred             cccccceeeeEEe
Q 001310          661 GVLSDNLRKLSVN  673 (1103)
Q Consensus       661 ~~~~~~i~~~~~~  673 (1103)
                      ... ...+.++++
T Consensus       288 ~~~-~~~~~~~~~  299 (300)
T TIGR03866       288 KVG-RLPWGVVVR  299 (300)
T ss_pred             Ecc-cccceeEeC
Confidence            653 333555544

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.90  E-value=6.3e-22  Score=189.24  Aligned_cols=320  Identities=13%  Similarity=0.192  Sum_probs=234.7

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCC
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGS  409 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~  409 (1103)
                      ..|.+.|..+.+.+...+++++|+.||.|.+||+++...-...-+ +-+ ..|.  .....-.+|.-.|..+.|-| |.-
T Consensus        40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~l-i~k-~~c~--v~~~h~~~Hky~iss~~WyP~DtG  115 (397)
T KOG4283|consen   40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGL-IAK-HKCI--VAKQHENGHKYAISSAIWYPIDTG  115 (397)
T ss_pred             ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccc-eeh-eeee--ccccCCccceeeeeeeEEeeecCc
Confidence            468899999999987666899999999999999986542111000 000 0111  12222568999999999999 778


Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCC-ceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK-QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  488 (1103)
                      .+.+++.|.+++|||.++-+...   .+ .-.+.|.+-++||-.. ..++++|..|-.|++-|+.+|.+-+++.||.+.|
T Consensus       116 mFtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~v  191 (397)
T KOG4283|consen  116 MFTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGV  191 (397)
T ss_pred             eeecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCce
Confidence            89999999999999999865433   22 2456788888888543 3367888888899999999999999999999999


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      .++.|+|..+ -.|++|+.||.|++||++..                                  .+.+++.|...++..
T Consensus       192 laV~Wsp~~e-~vLatgsaDg~irlWDiRra----------------------------------sgcf~~lD~hn~k~~  236 (397)
T KOG4283|consen  192 LAVEWSPSSE-WVLATGSADGAIRLWDIRRA----------------------------------SGCFRVLDQHNTKRP  236 (397)
T ss_pred             EEEEeccCce-eEEEecCCCceEEEEEeecc----------------------------------cceeEEeecccCccC
Confidence            9999998744 68899999999999998742                                  112444454444333


Q ss_pred             EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC---C-CCCCCceEEEecCCCEEEEEECCC
Q 001310          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG---G-GLPENPRICFNKNGTLLAVIANEN  644 (1103)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---~-~~~~v~~v~~s~~g~~l~~~~~dg  644 (1103)
                      ..++....|.+.|+.++|+.++.++++.+.|..+++|+..+|+....-.++   . ....-..+. +.+...++.--.++
T Consensus       237 p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~  315 (397)
T KOG4283|consen  237 PILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDG  315 (397)
T ss_pred             ccccccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCC
Confidence            333333344589999999999999999999999999999988654322111   0 000001122 33445566666678


Q ss_pred             eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                      .+.++++-++..++.+..|-..+.|.++.                      |+-+...+++.|+.+..|-..
T Consensus       316 ~lall~~~sgs~ir~l~~h~k~i~c~~~~----------------------~~fq~~~tg~~d~ni~~w~p~  365 (397)
T KOG4283|consen  316 SLALLNLLEGSFVRRLSTHLKRINCAAYR----------------------PDFEQCFTGDMNGNIYMWSPA  365 (397)
T ss_pred             eEEEEEccCceEEEeeecccceeeEEeec----------------------CchhhhhccccCCcccccccc
Confidence            99999999999999999998888877776                      566777888899998888753

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=5e-22  Score=191.85  Aligned_cols=300  Identities=15%  Similarity=0.194  Sum_probs=223.8

Q ss_pred             CCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1103)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  400 (1103)
                      ..|.++-.+|....  -.|+.||+.|. +||+|..||.|.|||+.|...-+.                   +.+|..+|+
T Consensus        12 ~~PEel~~tld~~~--a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~iar~-------------------lsaH~~pi~   69 (405)
T KOG1273|consen   12 EYPEELTHTLDNPL--AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIARM-------------------LSAHVRPIT   69 (405)
T ss_pred             cChHhhceeccCCc--cceEEeccCcc-eeeeeccCCcEEEEEccccchhhh-------------------hhcccccee
Confidence            45666767776443  78999999998 799999999999999998764433                   889999999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  480 (1103)
                      +++||+||+.|++++.|..|.+||+..|.+++++    ....+|+.+.|.|-.++..+++-- +..-.+-++..++....
T Consensus        70 sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n~~va~~~-~~sp~vi~~s~~~h~~L  144 (405)
T KOG1273|consen   70 SLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRNKCVATIM-EESPVVIDFSDPKHSVL  144 (405)
T ss_pred             EEEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCCeEEEEEe-cCCcEEEEecCCceeec
Confidence            9999999999999999999999999999876643    256789999999987764454443 44455555544322111


Q ss_pred             eecCCCceEEE--EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC-ccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          481 FEGHGAPVYSL--CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       481 ~~~~~~~v~~~--~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                      -....+.....  +-..+..|+++++|...|.+.++|..+.++...++... ..|..+.++..|+.++..+.    +..|
T Consensus       145 p~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvI  220 (405)
T KOG1273|consen  145 PKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVI  220 (405)
T ss_pred             cCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceE
Confidence            11111111111  11235677899999999999999999998888777665 68999999999999999876    7779


Q ss_pred             EEEeCCCC-------ee--EEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          558 VEWNESEG-------AI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       558 ~iwd~~~~-------~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      +.|+++.-       +.  .++++.-- .+..-.+++|+.+|.++++++ .-..++||....|.+++.+.+..+ .....
T Consensus       221 R~ye~~di~~~~r~~e~e~~~K~qDvV-Nk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kg-E~l~D  298 (405)
T KOG1273|consen  221 RTYEISDIDDEGRDGEVEPEHKLQDVV-NKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKG-EELLD  298 (405)
T ss_pred             EEEehhhhcccCccCCcChhHHHHHHH-hhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCch-hheee
Confidence            99987621       11  12222111 123456788999999998876 456799999999999999987654 35678


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      +.|+|-...+++. ..|.+++|.....
T Consensus       299 V~whp~rp~i~si-~sg~v~iw~~~~~  324 (405)
T KOG1273|consen  299 VNWHPVRPIIASI-ASGVVYIWAVVQV  324 (405)
T ss_pred             cccccceeeeeec-cCCceEEEEeecc
Confidence            8999988777777 6789999987643

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=3.9e-22  Score=203.55  Aligned_cols=293  Identities=15%  Similarity=0.219  Sum_probs=230.3

Q ss_pred             EEEEEcCCC-cEEEEECCCCCeeeeeeeeEeeccccccceeee-eccCCCccEEEEEECCCCCEEEEEeC-CCeEEEEEe
Q 001310          349 LLLVGTNVG-DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA-LVRDPGVSVNRVVWSPDGSLLGVAYS-KHIVQLYAY  425 (1103)
Q Consensus       349 llasgs~d~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~h~~~V~~~~~spdg~~las~~~-d~~i~iwd~  425 (1103)
                      ++.+++.|. ++.+||+.+|....++.              .. .+.+|.-    -+.  .+.|++++.. ...|.+|.+
T Consensus         9 ~~sssS~d~~~~~~~dl~TGt~~~~yk--------------g~~~a~~~sl----~~l--~~~yllsaq~~rp~l~vw~i   68 (476)
T KOG0646|consen    9 VCSSSSFDPINCIVWDLRTGTSLLQYK--------------GSYLAQAASL----TAL--NNEYLLSAQLKRPLLHVWEI   68 (476)
T ss_pred             EEeccCCCCcceeEEecCCCceeEEec--------------Ccccccchhh----hhh--chhheeeecccCcccccccc
Confidence            344444454 59999999998765411              00 0111111    011  2467777754 457999999


Q ss_pred             cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE
Q 001310          426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  505 (1103)
Q Consensus       426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  505 (1103)
                      .......+..   --.++|.+++-+|+|.  +|+.|+..|.|++|.+.+|..+..+.+|-..|+++.|  +.||.+|++|
T Consensus        69 ~k~~~~~q~~---v~Pg~v~al~s~n~G~--~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~f--s~dgs~iiTg  141 (476)
T KOG0646|consen   69 LKKDQVVQYI---VLPGPVHALASSNLGY--FLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKF--SDDGSHIITG  141 (476)
T ss_pred             Cchhhhhhhc---ccccceeeeecCCCce--EEEeecccCcEEEEEeccccHHHHHHhhccceeEEEE--eCCCcEEEec
Confidence            8765444222   2456799999999998  7888879999999999999999999999999999999  5688999999


Q ss_pred             ECCCeEEEEEcC---------CCCeeEEecCCCccEEEEEEccC--CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecc
Q 001310          506 SVDGKIKAWLYD---------SLGARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1103)
Q Consensus       506 ~~dg~i~iwd~~---------~~~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1103)
                      +.||.|++|++.         +......+..|.-+|+.+...+.  ..++++++.    |.++++||+..|..+..+...
T Consensus       142 skDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~----D~t~k~wdlS~g~LLlti~fp  217 (476)
T KOG0646|consen  142 SKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE----DRTIKLWDLSLGVLLLTITFP  217 (476)
T ss_pred             CCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC----CceEEEEEeccceeeEEEecC
Confidence            999999999763         23455677888889999888765  457888765    778999999999999888764


Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----------------eeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310          575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----------------QLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~g~~l~  638 (1103)
                      .    .+.+++.+|.+..+++|+.+|.|.+.++..-                ..+..+.+|.+...|+|++++-||.+|+
T Consensus       218 ~----si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLl  293 (476)
T KOG0646|consen  218 S----SIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLL  293 (476)
T ss_pred             C----cceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEE
Confidence            4    8999999999999999999999998876532                2344555565555899999999999999


Q ss_pred             EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  676 (1103)
                      +|+.||.+.|||..+.++++++....++|+.+.+.|..
T Consensus       294 SGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~  331 (476)
T KOG0646|consen  294 SGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLE  331 (476)
T ss_pred             eeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccc
Confidence            99999999999999999999998888999999887653

>KOG2055 consensus WD40 repeat protein [General function prediction only]

Probab=99.90  E-value=6.6e-22  Score=201.15  Aligned_cols=288  Identities=14%  Similarity=0.215  Sum_probs=232.8

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC-EEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS-LLG  412 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~-~la  412 (1103)
                      .++|++|.|+|.-. +|.+++.|++++||.+..........                 +.--..+|.+.+|.|+|. .++
T Consensus       213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~lqS-----------------~~l~~fPi~~a~f~p~G~~~i~  274 (514)
T KOG2055|consen  213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKLQS-----------------IHLEKFPIQKAEFAPNGHSVIF  274 (514)
T ss_pred             cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhhee-----------------eeeccCccceeeecCCCceEEE
Confidence            35999999999997 89999999999999987543222111                 112357899999999999 888


Q ss_pred             EEeCCCeEEEEEecCCCccccceEecccc-ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  491 (1103)
                      +++....++.||+.+.+..+ ...+.++. ..+.....|++++  +|+..|..|.|.+.-..+++.+.+++ -.+.|..+
T Consensus       275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~  350 (514)
T KOG2055|consen  275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF  350 (514)
T ss_pred             ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence            99999999999999976433 22444554 3577888999999  89999999999999999999999887 56788999


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc-cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC------
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE------  564 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~------  564 (1103)
                      +|+  .++..|++.+.+|.|.+||++...+...+...+. .-+++|.+++|.+||+|+.    .|.|.|||.++      
T Consensus       351 ~fs--Sdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  351 TFS--SDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN  424 (514)
T ss_pred             EEe--cCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence            985  5778999999999999999999988887766554 4578899999999999975    67799999653      


Q ss_pred             CeeEEEEecccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEEcCC-CCCCCCceEEEecCCCEEEEEE
Q 001310          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      .+++..+....   ..|+++.|+++.+.|+.+|  .+..+++-.+.+......++.. .....++|++|||.|.++|+|.
T Consensus       425 PkPik~~dNLt---t~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGN  501 (514)
T KOG2055|consen  425 PKPIKTVDNLT---TAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGN  501 (514)
T ss_pred             CCchhhhhhhh---eeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeec
Confidence            34555555544   7899999999999888876  5678999998887666555433 2345689999999999999999


Q ss_pred             CCCeEEEEEcC
Q 001310          642 NENRIKILETP  652 (1103)
Q Consensus       642 ~dg~i~iw~~~  652 (1103)
                      .+|.+.+|.+.
T Consensus       502 e~grv~l~kL~  512 (514)
T KOG2055|consen  502 EAGRVHLFKLH  512 (514)
T ss_pred             CCCceeeEeec
Confidence            99999999864

>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]

Probab=99.90  E-value=2e-21  Score=188.21  Aligned_cols=271  Identities=14%  Similarity=0.104  Sum_probs=211.5

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  473 (1103)
                      .....|+++.|+|.+..|++++.||++++||+...+...    .-.|..++.+++|.++.+   +++|+.||.|+.+|+.
T Consensus        11 pP~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln   83 (323)
T KOG1036|consen   11 PPEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLN   83 (323)
T ss_pred             CChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEec
Confidence            357899999999999999999999999999999874332    235899999999998765   9999999999999999


Q ss_pred             CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      ++.... +..|..+|.++...+..  ..+++|+.|++|++||.+.......+.... .|.++..  .|+.|++++.    
T Consensus        84 ~~~~~~-igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----  153 (323)
T KOG1036|consen   84 TGNEDQ-IGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----  153 (323)
T ss_pred             CCccee-eccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----
Confidence            888654 45699999999987543  479999999999999998744444444333 6666554  5677777765    


Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC----eeEEEEcCCCC-------C
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV----QLLTTIDAGGG-------L  622 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~  622 (1103)
                      +..+.+||+++......... ..-+..++++++-|++.-+++++-||.|.+=.++..    +....+..|..       .
T Consensus       154 ~r~v~iyDLRn~~~~~q~re-S~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~  232 (323)
T KOG1036|consen  154 DRKVLIYDLRNLDEPFQRRE-SSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEII  232 (323)
T ss_pred             CceEEEEEcccccchhhhcc-ccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEE
Confidence            55699999987654332111 112367899999999888999999999988666554    23334443321       2


Q ss_pred             CCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeee
Q 001310          623 PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1103)
Q Consensus       623 ~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  682 (1103)
                      .+|++++|+|-...|++|+.||.|.+||..+.+.+..+......|..++|+.++..++++
T Consensus       233 yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~~~SI~slsfs~dG~~LAia  292 (323)
T KOG1036|consen  233 YPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKYETSISSLSFSMDGSLLAIA  292 (323)
T ss_pred             EEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCCCCceEEEEeccCCCeEEEE
Confidence            368999999999999999999999999999999999888888889999998665555444

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.90  E-value=1e-20  Score=199.93  Aligned_cols=456  Identities=13%  Similarity=0.132  Sum_probs=290.9

Q ss_pred             cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee
Q 001310          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR  522 (1103)
Q Consensus       443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~  522 (1103)
                      .|..++|.|||.+++++.+   ..+.+||...|..++++++|.+.|+++++  +.||..+++|+.|..|.+|+-......
T Consensus        14 ci~d~afkPDGsqL~lAAg---~rlliyD~ndG~llqtLKgHKDtVycVAy--s~dGkrFASG~aDK~VI~W~~klEG~L   88 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG---SRLLVYDTSDGTLLQPLKGHKDTVYCVAY--AKDGKRFASGSADKSVIIWTSKLEGIL   88 (1081)
T ss_pred             chheeEECCCCceEEEecC---CEEEEEeCCCcccccccccccceEEEEEE--ccCCceeccCCCceeEEEeccccccee
Confidence            7999999999997444433   36999999999999999999999999999  568899999999999999975433322


Q ss_pred             EEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcE
Q 001310          523 VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVI  602 (1103)
Q Consensus       523 ~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i  602 (1103)
                      .  -.|+..|.|+.|+|-...|++|+-+.     .-+|........ ..+.    ...+.+++|..||.+++.|-.+|+|
T Consensus        89 k--YSH~D~IQCMsFNP~~h~LasCsLsd-----FglWS~~qK~V~-K~ks----s~R~~~CsWtnDGqylalG~~nGTI  156 (1081)
T KOG1538|consen   89 K--YSHNDAIQCMSFNPITHQLASCSLSD-----FGLWSPEQKSVS-KHKS----SSRIICCSWTNDGQYLALGMFNGTI  156 (1081)
T ss_pred             e--eccCCeeeEeecCchHHHhhhcchhh-----ccccChhhhhHH-hhhh----heeEEEeeecCCCcEEEEeccCceE
Confidence            2  34777899999999999999998643     667876544322 2221    2568999999999999999999999


Q ss_pred             EEEECCCCeeEEEEcCCCCCCCCceEEEecCC-----CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCc
Q 001310          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNG-----TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST  677 (1103)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g-----~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~  677 (1103)
                      .+-+....+.+..-...+...+|.+++|+|..     ..+++.....++.++.+... .+..-+...-.-.|+.+     
T Consensus       157 siRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~-~Igk~r~L~FdP~CisY-----  230 (1081)
T KOG1538|consen  157 SIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK-QIGKDRALNFDPCCISY-----  230 (1081)
T ss_pred             EeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-eecccccCCCCchhhee-----
Confidence            99875443333333333445689999999963     46777777788888776643 22222221222223333     


Q ss_pred             eeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCce
Q 001310          678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGV  757 (1103)
Q Consensus       678 ~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~  757 (1103)
                                       -++|.+++.|+.|+.+.++..+....+.     .  ......|..++..|+++.++.|+.||+
T Consensus       231 -----------------f~NGEy~LiGGsdk~L~~fTR~GvrLGT-----v--g~~D~WIWtV~~~PNsQ~v~~GCqDGT  286 (1081)
T KOG1538|consen  231 -----------------FTNGEYILLGGSDKQLSLFTRDGVRLGT-----V--GEQDSWIWTVQAKPNSQYVVVGCQDGT  286 (1081)
T ss_pred             -----------------ccCCcEEEEccCCCceEEEeecCeEEee-----c--cccceeEEEEEEccCCceEEEEEccCe
Confidence                             3788899999999988888654211110     0  114567999999999999999999999


Q ss_pred             EEEeecCCCcccc---------------------ccc---------------------cccccCCeeecCCCCCce-eec
Q 001310          758 HLMWRWPRNDLTL---------------------STE---------------------ATTKVPPRLYQPRHGPQF-MVN  794 (1103)
Q Consensus       758 i~vw~~~~~~~~~---------------------~~~---------------------~~~~~~~~~~~~~~~~~~-~~~  794 (1103)
                      +..|++-......                     .+.                     +.-...+.+|...++... +..
T Consensus       287 iACyNl~fSTVH~ly~~RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKiaiYrnrLAVQLpeki~iYel~se~~~~mhY  366 (1081)
T KOG1538|consen  287 IACYNLIFSTVHGLYKDRYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKIAIYRNRLAVQLPEKILIYELYSEDLSDMHY  366 (1081)
T ss_pred             eehhhhHHhHhhhhhHHhhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHHHhhhhhheecccceEEEEeccccccccchh
Confidence            9999886654300                     000                     000111223332222200 000


Q ss_pred             cCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEE--EcCCCCCEEEEEeCCCeEEEEE
Q 001310          795 DTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYN  872 (1103)
Q Consensus       795 ~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~--~s~~d~~~lasg~~dg~v~iwd  872 (1103)
                      .+.. .......+--+--.+..++.+.+..+..+|...-+. +... -.+-|+-+.  =.|.+..-|+.|..||.|.-.=
T Consensus       367 ~v~e-kI~kkf~cSLlVVc~~HiVlCqekrLqClDF~Gvk~-ReW~-M~S~iRYikV~GGP~gREgL~vGlknGqV~kiF  443 (1081)
T KOG1538|consen  367 RVKE-KIIKKFECSLLVVCANHIVLCQEKRLQCLDFSGVKE-REWQ-MESLIRYIKVIGGPPGREGLLVGLKNGQVLKIF  443 (1081)
T ss_pred             HHHH-HHHhhccceEEEEEcCeEEEEcccceeeecccchhh-hhhh-HHHHHHhhhhhcCCCCcceeEEEecCCcEEEEE
Confidence            0000 000011111111134455556666677777642111 1100 000011111  1122556788898888765444


Q ss_pred             cCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEE
Q 001310          873 ARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1103)
Q Consensus       873 ~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  952 (1103)
                      +++.-++-.. .....|.|+..+...+.||+..+.++..++|+.+++..    ++.+        .+.+++|.....-++
T Consensus       444 ~dN~~PiLl~-~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~elL----~QEp--------g~nSV~wNT~~E~Ml  510 (1081)
T KOG1538|consen  444 VDNLFPILLL-KQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKELL----FQEP--------GANSVAWNTQCEDML  510 (1081)
T ss_pred             ecCCchhhee-cccceeEEeeccCCcceEEEEccCCeEEEEEccCCceE----eecC--------CCceEEeeccccceE
Confidence            4443333222 24567999999999999999999999999999997732    2222        477899988765544


Q ss_pred             E-EeCCeEEE
Q 001310          953 L-VHETHLAI  961 (1103)
Q Consensus       953 ~-~~d~~v~i  961 (1103)
                      + +..|.+.|
T Consensus       511 cfT~~g~L~V  520 (1081)
T KOG1538|consen  511 CFTGGGYLNV  520 (1081)
T ss_pred             EEecCCceEE
Confidence            4 55565544

>KOG0646 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=1e-21  Score=200.50  Aligned_cols=255  Identities=15%  Similarity=0.162  Sum_probs=205.0

Q ss_pred             ceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEec
Q 001310          347 HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  426 (1103)
Q Consensus       347 ~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~  426 (1103)
                      .+++++-.....+.+|.+.......                +..+   -.++|.|++-+|+|.+|+.|+..|.|++|.+.
T Consensus        51 ~yllsaq~~rp~l~vw~i~k~~~~~----------------q~~v---~Pg~v~al~s~n~G~~l~ag~i~g~lYlWels  111 (476)
T KOG0646|consen   51 EYLLSAQLKRPLLHVWEILKKDQVV----------------QYIV---LPGPVHALASSNLGYFLLAGTISGNLYLWELS  111 (476)
T ss_pred             hheeeecccCccccccccCchhhhh----------------hhcc---cccceeeeecCCCceEEEeecccCcEEEEEec
Confidence            3444443445567777776544332                1112   34689999999999999999999999999999


Q ss_pred             CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC---------CCceeEEeecCCCceEEEEeeecC
Q 001310          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---------TGSRTYSFEGHGAPVYSLCPHAKE  497 (1103)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---------~~~~~~~~~~~~~~v~~~~~~~~~  497 (1103)
                      +|..+.   .+.+|=..|+|+.|+.||.  +++|||.||.|.+|++.         +-++++.|..|.-+|+++...+.+
T Consensus       112 sG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg  186 (476)
T KOG0646|consen  112 SGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGG  186 (476)
T ss_pred             cccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCC
Confidence            998776   5689999999999999999  89999999999999863         346788999999999999987766


Q ss_pred             CccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-------------
Q 001310          498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------------  564 (1103)
Q Consensus       498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-------------  564 (1103)
                      -..+++++|.|.++++||+..+.....+.. ...+.+++.+|.++.+++|+.    +|.|.+.++..             
T Consensus       187 ~~~rl~TaS~D~t~k~wdlS~g~LLlti~f-p~si~av~lDpae~~~yiGt~----~G~I~~~~~~~~~~~~~~v~~k~~  261 (476)
T KOG0646|consen  187 TNARLYTASEDRTIKLWDLSLGVLLLTITF-PSSIKAVALDPAERVVYIGTE----EGKIFQNLLFKLSGQSAGVNQKGR  261 (476)
T ss_pred             ccceEEEecCCceEEEEEeccceeeEEEec-CCcceeEEEcccccEEEecCC----cceEEeeehhcCCccccccccccc
Confidence            667999999999999999999877766654 457899999999999999976    55677665532             


Q ss_pred             ---CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC
Q 001310          565 ---GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1103)
Q Consensus       565 ---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1103)
                         +..+..+.||. ....|+|++.+-||..|++|+.||.|+|||+.+.++++++...  ..+|+.+.+.|-
T Consensus       262 ~~~~t~~~~~~Gh~-~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~--kgpVtnL~i~~~  330 (476)
T KOG0646|consen  262 HEENTQINVLVGHE-NESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS--KGPVTNLQINPL  330 (476)
T ss_pred             ccccceeeeecccc-CCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh--ccccceeEeecc
Confidence               23455667776 1138999999999999999999999999999999999888732  346888888664

>KOG1273 consensus WD40 repeat protein [General function prediction only]

Probab=99.89  E-value=9.5e-22  Score=189.96  Aligned_cols=266  Identities=15%  Similarity=0.235  Sum_probs=204.9

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      -.|+.||+.|.+||+|+.||.|.|||+.|...-+   .+.+|..+|++++||+||+  .|+|+|.|..|.+||+..|.++
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l  100 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL  100 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence            7799999999999999999999999999975433   6789999999999999999  8999999999999999999999


Q ss_pred             EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc----cEEEEEEccCCCEEEEEecCCCCc
Q 001310          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----GCTRMAYSANGRRLFSCGTSKEGE  554 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----~i~~~~~s~dg~~l~~~~~~~~~~  554 (1103)
                      +.+. ...+|+.+.|+|......+++--... -.+-++.............+    ...+..|.+.|+++++|..    .
T Consensus       101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~s-p~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGts----K  174 (405)
T KOG1273|consen  101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEES-PVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTS----K  174 (405)
T ss_pred             eEEE-ccCccceeeeccccCCeEEEEEecCC-cEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecC----c
Confidence            9887 77899999999987765555544333 44445554322221111111    1233468999999999975    7


Q ss_pred             eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-------eeE--EEEcCCCCCCCC
Q 001310          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-------QLL--TTIDAGGGLPEN  625 (1103)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-------~~~--~~~~~~~~~~~v  625 (1103)
                      |.+.++|..+-+++..++-..  ...|..+.++..|+.++.-+.|..||.|++..-       +..  +.+..--+...-
T Consensus       175 Gkllv~~a~t~e~vas~rits--~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~W  252 (405)
T KOG1273|consen  175 GKLLVYDAETLECVASFRITS--VQAIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQW  252 (405)
T ss_pred             ceEEEEecchheeeeeeeech--heeeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhh
Confidence            779999999999988887644  467899999999999999999999999997631       111  111110111234


Q ss_pred             ceEEEecCCCEEEEEEC-CCeEEEEEcCCCCeeEeccccc-cceeeeEEecCCc
Q 001310          626 PRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPIST  677 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~  677 (1103)
                      .+++|+.+|.+++.++. ...++||....|..++.+.+.. .....+.+.|...
T Consensus       253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp~rp  306 (405)
T KOG1273|consen  253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHPVRP  306 (405)
T ss_pred             hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccccee
Confidence            68999999999988775 4679999999999999998877 5566677775443

>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]

Probab=99.89  E-value=4.5e-22  Score=203.07  Aligned_cols=259  Identities=13%  Similarity=0.173  Sum_probs=204.4

Q ss_pred             CCCCeeEEEEecCCCEEEEE-c-CCeEEEEEcCCcee----------eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeE
Q 001310          801 SQEAVPCFALSKNDAYLFSA-S-GGVISLYIVMTFKT----------ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTI  868 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~-~-dg~i~iwd~~~~~~----------~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v  868 (1103)
                      |.+.|..+.+-|....|+++ + .+.|.|||..+..-          -.++.+|...-.+|+|++...-.|++|+.|++|
T Consensus       123 h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i  202 (422)
T KOG0264|consen  123 HDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTI  202 (422)
T ss_pred             CCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcE
Confidence            88999999999987666654 3 58899999874321          226778888888899999777899999999999


Q ss_pred             EEEEcCCce-------eEEEeccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCce
Q 001310          869 LIYNARSSE-------VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1103)
Q Consensus       869 ~iwd~~~~~-------~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1103)
                      ++||+....       ....+.+|.+.|..++|++- ..++++++.|+.+.|||+.+++   ..+.....+|..   .+.
T Consensus       203 ~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~---~~~~~~~~ah~~---~vn  276 (422)
T KOG0264|consen  203 CLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNT---SKPSHSVKAHSA---EVN  276 (422)
T ss_pred             EEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCC---CCCcccccccCC---cee
Confidence            999998532       35678899999999999985 4788999999999999999742   223344444443   899


Q ss_pred             EEEEcCCCCEEEE-E-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCC-CEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          941 HIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       941 ~l~fs~dg~~l~~-~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      +++|+|-+.+|++ + .|++|.+||+++.......+.+|...|..|.|||+. ..||+++.|+.+.|||+..-.......
T Consensus       277 ~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~e  356 (422)
T KOG0264|consen  277 CVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPE  356 (422)
T ss_pred             EEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChh
Confidence            9999997766554 4 799999999998776655588999999999999966 578999999999999997543322211


Q ss_pred             cccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310         1018 STAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1018 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                         .  ...+....+-...||...|.  .++|+|.++-.|+++++|+.++||+..
T Consensus       357 ---d--a~dgppEllF~HgGH~~kV~--DfsWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  357 ---D--AEDGPPELLFIHGGHTAKVS--DFSWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             ---h--hccCCcceeEEecCcccccc--cccCCCCCCeEEEEecCCceEEEeecc
Confidence               1  11123345556678999885  889999999999999999999999984

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.89  E-value=2.6e-21  Score=196.78  Aligned_cols=306  Identities=17%  Similarity=0.197  Sum_probs=229.9

Q ss_pred             ceeEecccCCcCceEEEecCCCc-eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~-~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ......+-|.++|++++|+|... .++|+|+..|+|-+||+.+.+......               .++..|+++|.++.
T Consensus       177 ~~~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v---------------~~f~~hs~~Vs~l~  241 (498)
T KOG4328|consen  177 RILNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGV---------------YLFTPHSGPVSGLK  241 (498)
T ss_pred             eecceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCce---------------EEeccCCccccceE
Confidence            34455667888999999999876 789999999999999996444333211               23778999999999


Q ss_pred             ECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce-eEEe
Q 001310          404 WSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSF  481 (1103)
Q Consensus       404 ~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~  481 (1103)
                      |+| +-..+++.+.||+|+.-|++++. ......+......+..+.|+.+..  .++.+..=|...+||.+++.. ...+
T Consensus       242 F~P~n~s~i~ssSyDGtiR~~D~~~~i-~e~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~  318 (498)
T KOG4328|consen  242 FSPANTSQIYSSSYDGTIRLQDFEGNI-SEEVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENL  318 (498)
T ss_pred             ecCCChhheeeeccCceeeeeeecchh-hHHHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhh
Confidence            999 56788899999999999999864 222223333455678888988887  677787778999999998765 5667


Q ss_pred             ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee----EEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                      .-|...|.+++++|... .++++++.|++.+|||++.....    .....|...|.+..|||.+-.|++.+.    +..|
T Consensus       319 ~lh~kKI~sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~I  393 (498)
T KOG4328|consen  319 RLHKKKITSVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEI  393 (498)
T ss_pred             hhhhcccceeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCce
Confidence            78999999999998744 79999999999999999865433    345567889999999998888887765    6679


Q ss_pred             EEEeCC----CCeeEEEEecccccCC--ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          558 VEWNES----EGAIKRTYQGLQLQHN--SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       558 ~iwd~~----~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                      +|||..    .-.....+.....+..  ......|.|+..++++|-.-..|-|+|-..++.+..+..+....-..-..|+
T Consensus       394 Rv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~H  473 (498)
T KOG4328|consen  394 RVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFH  473 (498)
T ss_pred             EEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccccceeec
Confidence            999983    2333333332221112  2345679999999999999999999999999988876554332222345799


Q ss_pred             cCCC-EEEEEECCCeEEEEEcCC
Q 001310          632 KNGT-LLAVIANENRIKILETPE  653 (1103)
Q Consensus       632 ~~g~-~l~~~~~dg~i~iw~~~~  653 (1103)
                      |-+. +++-++..|.|+||..+.
T Consensus       474 P~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  474 PMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             ccccceeccCCccceEEEEecCC
Confidence            9877 445555678888886543

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.89  E-value=1.7e-21  Score=203.97  Aligned_cols=322  Identities=12%  Similarity=0.169  Sum_probs=245.8

Q ss_pred             cccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310          318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1103)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  397 (1103)
                      ....||..|...+.||++.|.|+...|.|. +||+|+.||+|+||.+.||.++++..+                    .+
T Consensus       384 dLrPFPt~~~lvyrGHtg~Vr~iSvdp~G~-wlasGsdDGtvriWEi~TgRcvr~~~~--------------------d~  442 (733)
T KOG0650|consen  384 DLRPFPTRCALVYRGHTGLVRSISVDPSGE-WLASGSDDGTVRIWEIATGRCVRTVQF--------------------DS  442 (733)
T ss_pred             hcCCCcceeeeeEeccCCeEEEEEecCCcc-eeeecCCCCcEEEEEeecceEEEEEee--------------------cc
Confidence            445677889999999999999999999998 799999999999999999999987443                    35


Q ss_pred             cEEEEEECCCCC--EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEE----cCCCceEEEe
Q 001310          398 SVNRVVWSPDGS--LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC----GDDKTIKVWD  471 (1103)
Q Consensus       398 ~V~~~~~spdg~--~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~----~~d~~i~iwd  471 (1103)
                      .|.|++|+|.+.  .||++-... +.|-+..-|..+..     +.+           ..  .|+++    ..|+.+..|.
T Consensus       443 ~I~~vaw~P~~~~~vLAvA~~~~-~~ivnp~~G~~~e~-----~~t-----------~e--ll~~~~~~~~p~~~~~~W~  503 (733)
T KOG0650|consen  443 EIRSVAWNPLSDLCVLAVAVGEC-VLIVNPIFGDRLEV-----GPT-----------KE--LLASAPNESEPDAAVVTWS  503 (733)
T ss_pred             eeEEEEecCCCCceeEEEEecCc-eEEeCccccchhhh-----cch-----------hh--hhhcCCCccCCcccceeec
Confidence            899999999765  455554444 66666655532221     000           00  12222    2355778887


Q ss_pred             CCCCc----eeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEE
Q 001310          472 AVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       472 ~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1103)
                      -....    -++..-.|...|..+.||.  .|.+|++...+   ..|.|.++.....+..+....+.+.++.|+|...+|
T Consensus       504 ~~~~~e~~~~v~~~I~~~k~i~~vtWHr--kGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~l  581 (733)
T KOG0650|consen  504 RASLDELEKGVCIVIKHPKSIRQVTWHR--KGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYL  581 (733)
T ss_pred             hhhhhhhccceEEEEecCCccceeeeec--CCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceE
Confidence            54221    1344456899999999975  66799887654   458899998877777777777889999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCCCCC
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLP  623 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~  623 (1103)
                      ++++     ...|++||+..++.++.+....   ..|..++.+|.|..|+.|+.|+.+..+|+.-. ++.+++..|.  .
T Consensus       582 fVaT-----q~~vRiYdL~kqelvKkL~tg~---kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~--~  651 (733)
T KOG0650|consen  582 FVAT-----QRSVRIYDLSKQELVKKLLTGS---KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHE--K  651 (733)
T ss_pred             EEEe-----ccceEEEehhHHHHHHHHhcCC---eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhh--h
Confidence            9887     4459999999988887776655   78999999999999999999999999999854 4566666663  4


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcC------CC---CeeEeccccccc----eeeeEEecCCceeeeeccCCceEe
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETP------ES---NSVDAAGVLSDN----LRKLSVNPISTVTGAGIANGSVSV  690 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~------~~---~~~~~~~~~~~~----i~~~~~~~~~~~~~~~~~~~~~~~  690 (1103)
                      .+.+|+|++.-.++++|+.||++.|+-..      .+   -++..+++|...    |..+.|+                 
T Consensus       652 avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wH-----------------  714 (733)
T KOG0650|consen  652 AVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWH-----------------  714 (733)
T ss_pred             hhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeeccc-----------------
Confidence            68999999999999999999999988432      11   345566777655    5555555                 


Q ss_pred             cCCCCCCCccceeeccccccccc
Q 001310          691 NEDPKEDVKPEISVEAENKSEVE  713 (1103)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w  713 (1103)
                           |...++++++.||+|++|
T Consensus       715 -----P~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  715 -----PRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             -----CCCceEEecCCCceEEee
Confidence                 677889999999999998

>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]

Probab=99.88  E-value=1.6e-21  Score=204.12  Aligned_cols=324  Identities=13%  Similarity=0.171  Sum_probs=237.7

Q ss_pred             eeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310          389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1103)
Q Consensus       389 ~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~  468 (1103)
                      ..++.||++.|.++...|.|.+||+|+.||+|+||.+.+|.|++..    ...+.|.|++|+|.+...+|+.+- ...+.
T Consensus       393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~-~~~~~  467 (733)
T KOG0650|consen  393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAV-GECVL  467 (733)
T ss_pred             eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEe-cCceE
Confidence            3458899999999999999999999999999999999999988743    234579999999998864455444 44466


Q ss_pred             EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE----ECCCeEEEEEcCCCC----eeEEecCCCccEEEEEEccC
Q 001310          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----SVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN  540 (1103)
Q Consensus       469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d  540 (1103)
                      |-+..-|..+..-.               ....|+++    ..++.+..|.-....    .+.....+...|..+.|+.+
T Consensus       468 ivnp~~G~~~e~~~---------------t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk  532 (733)
T KOG0650|consen  468 IVNPIFGDRLEVGP---------------TKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK  532 (733)
T ss_pred             EeCccccchhhhcc---------------hhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence            76655553221110               00111111    234566778654222    12345567789999999999


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310          541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  620 (1103)
                      |.||++...++ +...|.|.++........|....   +.+.++.|+|...++++++. ..|+|||+..+..++.+... 
T Consensus       533 GDYlatV~~~~-~~~~VliHQLSK~~sQ~PF~ksk---G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg-  606 (733)
T KOG0650|consen  533 GDYLATVMPDS-GNKSVLIHQLSKRKSQSPFRKSK---GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG-  606 (733)
T ss_pred             CceEEEeccCC-CcceEEEEecccccccCchhhcC---CceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC-
Confidence            99999987654 36678999988776666665544   78999999999999988875 67999999987777665433 


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310          621 GLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1103)
Q Consensus       621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1103)
                       ...|..++.+|.|..|++++.|+.+..+|+.-. ++.+.++.|...++.+++++                      .-.
T Consensus       607 -~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~----------------------ryP  663 (733)
T KOG0650|consen  607 -SKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHK----------------------RYP  663 (733)
T ss_pred             -CeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcc----------------------ccc
Confidence             346889999999999999999999999999855 67889999999999999984                      445


Q ss_pred             cceeeccccccccccccccCCccceeeeccC---cccccc----EEEEEEecCCcEEEEeecCceEEEe
Q 001310          700 PEISVEAENKSEVEKPLFARPSECQSLLLPS---KVKANK----ISRLTYNNGGQAIFALASNGVHLMW  761 (1103)
Q Consensus       700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~---~~~~~~----i~~~~~s~~g~~l~~~~~dg~i~vw  761 (1103)
                      ++++++.|+++.++.-..........+..|.   .+|...    |....|+|...+|++++.||+|++|
T Consensus       664 Lfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf  732 (733)
T KOG0650|consen  664 LFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF  732 (733)
T ss_pred             eeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence            5677777787777653321111111111111   234444    8888999999999999999999998

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=99.88  E-value=4.3e-20  Score=195.21  Aligned_cols=273  Identities=13%  Similarity=0.153  Sum_probs=203.7

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      .|..++|-|||..+++.++  ..+.|||+..|..+.+                   +++|.+.|.|++||.||+++|+|+
T Consensus        14 ci~d~afkPDGsqL~lAAg--~rlliyD~ndG~llqt-------------------LKgHKDtVycVAys~dGkrFASG~   72 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAAG--SRLLVYDTSDGTLLQP-------------------LKGHKDTVYCVAYAKDGKRFASGS   72 (1081)
T ss_pred             chheeEECCCCceEEEecC--CEEEEEeCCCcccccc-------------------cccccceEEEEEEccCCceeccCC
Confidence            7999999999987665543  6899999999998876                   889999999999999999999999


Q ss_pred             CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeee
Q 001310          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1103)
                      .|..|.+|+.+-...++     ..|.+.|.|+.|+|-..  .|+|++-. ..-+|..+.....    .|...+..++.++
T Consensus        73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsLs-dFglWS~~qK~V~----K~kss~R~~~CsW  140 (1081)
T KOG1538|consen   73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSLS-DFGLWSPEQKSVS----KHKSSSRIICCSW  140 (1081)
T ss_pred             CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcchh-hccccChhhhhHH----hhhhheeEEEeee
Confidence            99999999976543232     26999999999999988  68888754 4678986554433    2444444444444


Q ss_pred             cCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCccEEEEEEccCCC-----EEEEEecCCCCceeEEEEeCCCCee
Q 001310          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGR-----RLFSCGTSKEGESFLVEWNESEGAI  567 (1103)
Q Consensus       496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~-----~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1103)
                      +.||.+++.|-.+|+|.+-+-. ++....+.   +...+|.+++|+|...     .+++.--    ..++..+.+ +|+.
T Consensus       141 tnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~L-sG~~  214 (1081)
T KOG1538|consen  141 TNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQL-SGKQ  214 (1081)
T ss_pred             cCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEe-ccee
Confidence            7899999999999999987543 33333333   3556899999999642     2222211    222333333 3444


Q ss_pred             EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1103)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~  647 (1103)
                      +..-+...   ....|+.+.++|.+++.|+.|+.+.+|-. .|-.+.++....  ..|+.++..|+++.++.|..||+|.
T Consensus       215 Igk~r~L~---FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiA  288 (1081)
T KOG1538|consen  215 IGKDRALN---FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIA  288 (1081)
T ss_pred             ecccccCC---CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeee
Confidence            33322222   45678889999999999999999999974 566666665432  4689999999999999999999999


Q ss_pred             EEEcCC
Q 001310          648 ILETPE  653 (1103)
Q Consensus       648 iw~~~~  653 (1103)
                      .|++..
T Consensus       289 CyNl~f  294 (1081)
T KOG1538|consen  289 CYNLIF  294 (1081)
T ss_pred             hhhhHH
Confidence            998763

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=8.2e-23  Score=218.68  Aligned_cols=237  Identities=17%  Similarity=0.287  Sum_probs=213.2

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +..|...|.++..-..++.+++|+.|..+-+|.+.....+.   .+.+|..+|.++.|+++..  +|++|+.+|+|++||
T Consensus        24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD   98 (825)
T KOG0267|consen   24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD   98 (825)
T ss_pred             hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence            34588999999987789999999999999999987654443   6889999999999999988  899999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      ++.++.++++.+|...+.++.|+|  -+.+.++|+.|+.+++||.+...+...+..|...+..+.|+|+|++++.++.  
T Consensus        99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e--  174 (825)
T KOG0267|consen   99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE--  174 (825)
T ss_pred             hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence            999999999999999999999976  5578999999999999999999999999999999999999999999999875  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                        +..+.+||...|+....|.+|.   +.+.++.|+|..-.+..|+.|+++++||+++.+.+......  ...|.+.+|+
T Consensus       175 --d~tvki~d~~agk~~~ef~~~e---~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn  247 (825)
T KOG0267|consen  175 --DNTVKIWDLTAGKLSKEFKSHE---GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFN  247 (825)
T ss_pred             --cceeeeeccccccccccccccc---ccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeec
Confidence              6779999999999999999998   89999999999888888999999999999998888776654  4579999999


Q ss_pred             cCCCEEEEEECCC
Q 001310          632 KNGTLLAVIANEN  644 (1103)
Q Consensus       632 ~~g~~l~~~~~dg  644 (1103)
                      |++..+++|....
T Consensus       248 ~~~~~~~~G~q~s  260 (825)
T KOG0267|consen  248 PDGKIVLSGEQIS  260 (825)
T ss_pred             CCceeeecCchhh
Confidence            9999998887653

>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]

Probab=99.88  E-value=1.1e-20  Score=180.77  Aligned_cols=281  Identities=16%  Similarity=0.155  Sum_probs=207.5

Q ss_pred             CCCccceeeccccccccccccccCCc---------cceeeeccCccccccEEEEEEecCC-cEEEEeecCceEEEeecCC
Q 001310          696 EDVKPEISVEAENKSEVEKPLFARPS---------ECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPR  765 (1103)
Q Consensus       696 ~d~~~l~s~~~d~~i~~w~~~~~~~~---------~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw~~~~  765 (1103)
                      ..|+++++|+.||.+.+||++....-         .|........+|...|.++.|-|-. ..+.+++.|.++++||.++
T Consensus        54 tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnT  133 (397)
T KOG4283|consen   54 TEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNT  133 (397)
T ss_pred             ccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeeccc
Confidence            57999999999999999998764411         1222222336788999999998854 4556667799999988654


Q ss_pred             CccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC---CEEEEEc-CCeEEEEEcCCceeeEEecC
Q 001310          766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND---AYLFSAS-GGVISLYIVMTFKTILTIMP  841 (1103)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~---~~l~~~~-dg~i~iwd~~~~~~~~~~~~  841 (1103)
                      ..                      ....+.     ....|.+-++||-.   -++|+|. +-.|++.|+.+|...+++.+
T Consensus       134 lQ----------------------~a~~F~-----me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG  186 (397)
T KOG4283|consen  134 LQ----------------------EAVDFK-----MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG  186 (397)
T ss_pred             ce----------------------eeEEee-----cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc
Confidence            32                      122222     34456666666643   3566666 46799999999999999999


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEE--------------eccCCCCEEEEEEccCCCEEEEEeC
Q 001310          842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISK--------------LEGHSKRVTGLVFSDALNILVSSGG  906 (1103)
Q Consensus       842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~--------------l~~h~~~V~~l~~s~dg~~l~s~s~  906 (1103)
                      |.+.|.++.|+|...-.||+|+.||.|++||++.. .+...              -.+|.+.|..++|+.||.++++++.
T Consensus       187 Hr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt  266 (397)
T KOG4283|consen  187 HRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT  266 (397)
T ss_pred             ccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC
Confidence            99999999999976778999999999999999864 22222              2357889999999999999999999


Q ss_pred             CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEE-EEeCCeEEEEECCCceEEEEeeCCCCcCeEEEE
Q 001310          907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAEELTCLKQWFPISSVPISQAT  985 (1103)
Q Consensus       907 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~-~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~  985 (1103)
                      |..+++|+...|+-......+........ ..+. +. +-+...++ .-.++.+.++.+-+|+.+.. ...|...|.+.+
T Consensus       267 d~r~r~wn~~~G~ntl~~~g~~~~n~~~~-~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~-l~~h~k~i~c~~  342 (397)
T KOG4283|consen  267 DDRIRVWNMESGRNTLREFGPIIHNQTTS-FAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRR-LSTHLKRINCAA  342 (397)
T ss_pred             ccceEEeecccCccccccccccccccccc-ceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEe-eecccceeeEEe
Confidence            99999999998874332222221111110 0111 23 33333333 34678999999999999987 567899999999


Q ss_pred             EccCCCEEEEEecCCcEEEEeC
Q 001310          986 FSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       986 fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                      |-||=+.+.++..|+.|..|-.
T Consensus       343 ~~~~fq~~~tg~~d~ni~~w~p  364 (397)
T KOG4283|consen  343 YRPDFEQCFTGDMNGNIYMWSP  364 (397)
T ss_pred             ecCchhhhhccccCCccccccc
Confidence            9999999999999999999976

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.87  E-value=4.4e-21  Score=207.39  Aligned_cols=242  Identities=16%  Similarity=0.235  Sum_probs=197.4

Q ss_pred             EEEEec-CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC-CE
Q 001310          739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND-AY  816 (1103)
Q Consensus       739 ~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~-~~  816 (1103)
                      .+.|.. +.++|++++..|.|.+||+.....                   ...+..  +.  .|...+.++.|++-. .+
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~r-------------------nk~l~~--f~--EH~Rs~~~ldfh~tep~i  148 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIR-------------------NKLLTV--FN--EHERSANKLDFHSTEPNI  148 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCcccc-------------------chhhhH--hh--hhccceeeeeeccCCccE
Confidence            344442 456788999999999999876311                   000111  11  499999999999864 66


Q ss_pred             EEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccCCCCEEEEEE
Q 001310          817 LFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVF  894 (1103)
Q Consensus       817 l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h~~~V~~l~~  894 (1103)
                      |++|+ ||.|++||+...+...++.+....|+.+.|+|..+..++++.+.|.+++||++.. ++...+.+|.++|.|+.|
T Consensus       149 liSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw  228 (839)
T KOG0269|consen  149 LISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW  228 (839)
T ss_pred             EEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence            77777 8999999999999999999888999999999988899999999999999999864 567888999999999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-E---eCCeEEEEECCCceEE
Q 001310          895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V---HETHLAIYEAEELTCL  970 (1103)
Q Consensus       895 s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~---~d~~v~iwd~~~~~~~  970 (1103)
                      +|++.+|||||.|++|+|||..+++.....++.+..       ++.++.|-|+-.+.++ +   .|..|+|||++..-..
T Consensus       229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTia-------pv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP  301 (839)
T KOG0269|consen  229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIA-------PVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIP  301 (839)
T ss_pred             cCCCceeeecCCCccEEEEeccCCCccceeEEeecc-------eeeeeeeccCccchhhhhhccccceEEEEeecccccc
Confidence            999999999999999999999987765555555543       6999999999876554 2   6889999999988777


Q ss_pred             EEeeCCCCcCeEEEEEcc-CCCEEEEEecCCcEEEEeCCCc
Q 001310          971 KQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      ...+..|...++.++|-. |-..|.+++.||+|..-.+++.
T Consensus       302 ~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kna  342 (839)
T KOG0269|consen  302 YATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNA  342 (839)
T ss_pred             ceeeeccCccccceeccCCCceeeEeecCccHHHHhhhhcc
Confidence            777888999999999965 5567889999999877665544

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.85  E-value=1.2e-19  Score=176.84  Aligned_cols=295  Identities=15%  Similarity=0.260  Sum_probs=214.2

Q ss_pred             EecccCCcCceEEEecC----CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          328 QTLIEGSSSPMSMDFHP----VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~sp----dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      +.+++|..+|..++|.+    +...++|+.+. ..+.||......-+..              ++...-..|......++
T Consensus        32 ~l~ed~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir~--------------lq~y~D~d~~Esfytcs   96 (385)
T KOG1034|consen   32 HLKEDHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIRL--------------LQSYADEDHDESFYTCS   96 (385)
T ss_pred             ehhccCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCccceee--------------eeeccCCCCCcceEEEE
Confidence            45678989999999984    33335565544 6788998865432211              12222335888899999


Q ss_pred             ECCCC----CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          404 WSPDG----SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       404 ~spdg----~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      |+-|.    -+||+|+.-|.|+|.|+.++++..   .+.+|...|+.+.|.|+..+ +++++|.|.+|++||+++..++.
T Consensus        97 w~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~  172 (385)
T KOG1034|consen   97 WSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVA  172 (385)
T ss_pred             EEecCCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEE
Confidence            98753    478999999999999999987766   67899999999999999877 89999999999999999999998


Q ss_pred             Ee---ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE------Ee----------------------cCC
Q 001310          480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV------DY----------------------DAP  528 (1103)
Q Consensus       480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~------~~----------------------~~~  528 (1103)
                      .|   .+|.+.|.++.|+.  +|.+|++++.|.++++|++...+...      .+                      ..|
T Consensus       173 VfGG~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diH  250 (385)
T KOG1034|consen  173 VFGGVEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIH  250 (385)
T ss_pred             EecccccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccc
Confidence            87   57999999999965  66799999999999999997432111      00                      112


Q ss_pred             CccEEEEEEccCCCEEEEEecCCCCceeEEEEeC-CCCee-------------EEEEecccccCCceEEE--EEcCCCCE
Q 001310          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE-SEGAI-------------KRTYQGLQLQHNSVSVV--HFDTAKDQ  592 (1103)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~~~v~~~--~~~~~~~~  592 (1103)
                      ...|.|+.|-  |.++++-+.    ++.|..|.. +-++.             +..+.-.   ...+.-+  +|.|-++.
T Consensus       251 rnyVDCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~  321 (385)
T KOG1034|consen  251 RNYVDCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKM  321 (385)
T ss_pred             cchHHHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHH
Confidence            2222233332  456665443    557999987 22221             1222222   2445444  45566889


Q ss_pred             EEEEeCCCcEEEEECCCCeeE--EEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          593 ILAAGDDHVIKIWDMNKVQLL--TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       593 l~~~~~dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      |+.|...|.|++||++..++.  .++..+.....|...+|+.||..|+...+|++|.-||..
T Consensus       322 la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv  383 (385)
T KOG1034|consen  322 LALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV  383 (385)
T ss_pred             HhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence            999999999999999876652  333333444678999999999999999999999999854

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.85  E-value=3.9e-19  Score=171.83  Aligned_cols=256  Identities=13%  Similarity=0.164  Sum_probs=191.0

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCC-ccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~  468 (1103)
                      -.+|..-|+++.|.+-|+++|+|+.|++|+|||.+... ........+.|.+.|..+.|.+-  |+  .+++++.|+++.
T Consensus         9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv~   86 (361)
T KOG2445|consen    9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTVS   86 (361)
T ss_pred             ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCcee
Confidence            45799999999999999999999999999999965432 33444567899999999999663  66  899999999999


Q ss_pred             EEeCCC---------CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE------ec-------
Q 001310          469 VWDAVT---------GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD------YD-------  526 (1103)
Q Consensus       469 iwd~~~---------~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~------~~-------  526 (1103)
                      ||.-..         .....++......|++++|.|..-|-.+++++.||.+|||+.........      +.       
T Consensus        87 iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~  166 (361)
T KOG2445|consen   87 IWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPG  166 (361)
T ss_pred             eeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcc
Confidence            997421         12345667788899999999999999999999999999998754332221      11       


Q ss_pred             CCCccEEEEEEccC---CCEEEEEecCC-CCceeEEEEeCCCCe----eEEEEecccccCCceEEEEEcCCC----CEEE
Q 001310          527 APGLGCTRMAYSAN---GRRLFSCGTSK-EGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK----DQIL  594 (1103)
Q Consensus       527 ~~~~~i~~~~~s~d---g~~l~~~~~~~-~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~----~~l~  594 (1103)
                      .+..+..|+.|+|.   ..++++++.+. ...+.++||....+.    .+..+.++.   .+|+.++|.|+-    ..|+
T Consensus       167 ~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~---dpI~di~wAPn~Gr~y~~lA  243 (361)
T KOG2445|consen  167 KNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHT---DPIRDISWAPNIGRSYHLLA  243 (361)
T ss_pred             cccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCC---CcceeeeeccccCCceeeEE
Confidence            23346788899873   45677776431 122356677654332    344455555   999999999973    4678


Q ss_pred             EEeCCCcEEEEECCCCe-----------------eEEEEc-CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          595 AAGDDHVIKIWDMNKVQ-----------------LLTTID-AGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       595 ~~~~dg~i~iwd~~~~~-----------------~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      +++.|| |+||.+....                 .+..+. ..+|...|..+.|+-.|..|++.++||.+++|...-
T Consensus       244 vA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany  319 (361)
T KOG2445|consen  244 VATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANY  319 (361)
T ss_pred             EeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhh
Confidence            899999 9999987311                 111221 234456799999999999999999999999997653

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.85  E-value=6.2e-20  Score=194.18  Aligned_cols=289  Identities=17%  Similarity=0.212  Sum_probs=206.3

Q ss_pred             CCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEE
Q 001310          344 PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLY  423 (1103)
Q Consensus       344 pdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iw  423 (1103)
                      |+.+.+||.+..||.|.++|.....-...           ...|.  ....|.+.|..+.|-|....|++++.|.++++|
T Consensus        61 ~n~eHiLavadE~G~i~l~dt~~~~fr~e-----------e~~lk--~~~aH~nAifDl~wapge~~lVsasGDsT~r~W  127 (720)
T KOG0321|consen   61 PNKEHILAVADEDGGIILFDTKSIVFRLE-----------ERQLK--KPLAHKNAIFDLKWAPGESLLVSASGDSTIRPW  127 (720)
T ss_pred             CCccceEEEecCCCceeeecchhhhcchh-----------hhhhc--ccccccceeEeeccCCCceeEEEccCCceeeee
Confidence            34556899999999999999865432200           00111  155799999999999977789999999999999


Q ss_pred             EecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc---------------------------
Q 001310          424 AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---------------------------  476 (1103)
Q Consensus       424 d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---------------------------  476 (1103)
                      |++++++.... .+.||.+.|.+++|.|++.. .+++|+.||.|.|||+.-..                           
T Consensus       128 dvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k  205 (720)
T KOG0321|consen  128 DVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK  205 (720)
T ss_pred             eeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence            99998876543 47799999999999999876 89999999999999985322                           


Q ss_pred             eeEEeecCCCceEE-EEeeecCCccEEEEEEC-CCeEEEEEcCCCCeeEE--------ecCC---CccEEEEEEccCCCE
Q 001310          477 RTYSFEGHGAPVYS-LCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVD--------YDAP---GLGCTRMAYSANGRR  543 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~-~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~--------~~~~---~~~i~~~~~s~dg~~  543 (1103)
                      .+.....+...|.+ +......|...|++++. |+.|+|||++.......        +..+   ...+.++.....|.+
T Consensus       206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~  285 (720)
T KOG0321|consen  206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTY  285 (720)
T ss_pred             cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCe
Confidence            01112234444433 11111235678888887 99999999987654332        2222   235778888888899


Q ss_pred             EEEEecCCCCceeEEEEeCCCC--eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE-EEEcCCC
Q 001310          544 LFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL-TTIDAGG  620 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~  620 (1103)
                      |++...    |+.|+.||+.+-  ..+..+.++......+. -..+|++.++++|+.|...++|.+.+.+.- ..+.+  
T Consensus       286 L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vk-s~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~G--  358 (720)
T KOG0321|consen  286 LFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVK-SELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLG--  358 (720)
T ss_pred             EEEEec----CCcEEEEeccccCcCchhhccCcccceeeee-eecCCCCceEeccCCCcceeeeeecCccCChhhhhC--
Confidence            887765    666999999754  33445555441112222 346899999999999999999999876543 33333  


Q ss_pred             CCCCCceEEEecC-CCEEEEEECCCeEEEEEcCCC
Q 001310          621 GLPENPRICFNKN-GTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       621 ~~~~v~~v~~s~~-g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      +...|.+++|.|. -.-++++++|..+++|++..+
T Consensus       359 ht~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~  393 (720)
T KOG0321|consen  359 HTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG  393 (720)
T ss_pred             cceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence            3556899999873 234666699999999999655

>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.85  E-value=1.7e-21  Score=208.80  Aligned_cols=238  Identities=11%  Similarity=0.206  Sum_probs=212.3

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +....|+..|.|+..-..++ .+++|+.|..+-+|.+..--.+..                   +.+|+.+|.++.|+++
T Consensus        22 ~~~~~hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~S-------------------~~~hespIeSl~f~~~   81 (825)
T KOG0267|consen   22 REFVAHSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAITS-------------------LTGHESPIESLTFDTS   81 (825)
T ss_pred             hhhhhhhhhhceeeeeccce-eeccCCCceeeccccccCCchhhe-------------------eeccCCcceeeecCcc
Confidence            44567888999999866665 899999999999999865544432                   7799999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      ..+|++|+.+|+|++||++.++.++   +|.||...+..+.|+|-+.  +.++|+.|+.+++||+....|.+.+.+|...
T Consensus        82 E~LlaagsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~v  156 (825)
T KOG0267|consen   82 ERLLAAGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRV  156 (825)
T ss_pred             hhhhcccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcce
Confidence            9999999999999999999987766   7889999999999999999  7899999999999999999999999999999


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1103)
                      |..+.|.  ++|.++++++.|.++++||+..++....+..|...+..+.|+|..-.++.|+.    +..+.+||+++.+.
T Consensus       157 v~~l~ls--P~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~  230 (825)
T KOG0267|consen  157 VDVLRLS--PDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEV  230 (825)
T ss_pred             eEEEeec--CCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEE
Confidence            9999995  58899999999999999999999999999999999999999999988888876    66799999999888


Q ss_pred             EEEEecccccCCceEEEEEcCCCCEEEEEeCC
Q 001310          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD  599 (1103)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  599 (1103)
                      +.......   ..|.+.+|+|++..+++|...
T Consensus       231 I~s~~~~~---~~v~~~~fn~~~~~~~~G~q~  259 (825)
T KOG0267|consen  231 ISSGKPET---DGVRSLAFNPDGKIVLSGEQI  259 (825)
T ss_pred             eeccCCcc---CCceeeeecCCceeeecCchh
Confidence            87777665   789999999999988887654

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.85  E-value=1.6e-19  Score=181.29  Aligned_cols=308  Identities=15%  Similarity=0.170  Sum_probs=219.0

Q ss_pred             ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      .+..|+ +|..+.|.+++...+|+|+.|..|+||.++.+..-...          ........|..|...|+++.|+|+|
T Consensus         9 ~wH~~~-pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~----------~~V~y~s~Ls~H~~aVN~vRf~p~g   77 (434)
T KOG1009|consen    9 SWHDHE-PVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD----------MKVEYLSSLSRHTRAVNVVRFSPDG   77 (434)
T ss_pred             EecCCC-ceEEEEeccCcccceecccCccceeeeeeeecCCCCCc----------eeEEEeecccCCcceeEEEEEcCCc
Confidence            345665 99999999988756999999999999999765433210          0001123488999999999999999


Q ss_pred             CEEEEEeCCCeEEEEEec--------C-----CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310          409 SLLGVAYSKHIVQLYAYH--------G-----GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~--------~-----~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  475 (1103)
                      ..||+|+.+|.|.+|...        +     .+.......+.+|...|..++|+||+.  ++++++-|..+++||+..|
T Consensus        78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G  155 (434)
T KOG1009|consen   78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAG  155 (434)
T ss_pred             CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccc
Confidence            999999999999999877        3     122223446789999999999999999  8999999999999999999


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-------------------CCC----ccE
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------------APG----LGC  532 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------------------~~~----~~i  532 (1103)
                      ..+..+..|...|..++|.|.  ++++++-+.|...+.+.+..........                   .|.    .-.
T Consensus       156 ~l~~~~~dh~~yvqgvawDpl--~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFF  233 (434)
T KOG1009|consen  156 QLLAILDDHEHYVQGVAWDPL--NQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFF  233 (434)
T ss_pred             eeEeeccccccccceeecchh--hhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhh
Confidence            999999999999999999664  4788888888866666554332211100                   000    124


Q ss_pred             EEEEEccCCCEEEEEecCCCC-----ceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCC-----------------
Q 001310          533 TRMAYSANGRRLFSCGTSKEG-----ESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTA-----------------  589 (1103)
Q Consensus       533 ~~~~~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~-----------------  589 (1103)
                      ..++|+|||..+++...--+.     .+..++++-.. .++...+.+..   .....+.|+|-                 
T Consensus       234 rRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~---k~~lavr~~pVy~elrp~~~~~~~~~lp  310 (434)
T KOG1009|consen  234 RRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPK---KPALAVRFSPVYYELRPLSSEKFLFVLP  310 (434)
T ss_pred             hhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCC---cceEEEEeeeeEEEeccccccccccccc
Confidence            568999999999865431110     22334554331 12233333333   44455555431                 


Q ss_pred             CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310          590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1103)
Q Consensus       590 ~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~  655 (1103)
                      -+.+++......|++||.++-.++.....- +...++.++|++||..+++.+.||-..+...+..+
T Consensus       311 yrlvfaiAt~~svyvydtq~~~P~~~v~ni-hy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~e  375 (434)
T KOG1009|consen  311 YRLVFAIATKNSVYVYDTQTLEPLAVVDNI-HYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWE  375 (434)
T ss_pred             cceEEEEeecceEEEeccccccceEEEeee-eeeeecceeecCCCcEEEEeccCCceEEEEEcchh
Confidence            122333334578999999988877766432 34678999999999999999999998887776553

>KOG0269 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.84  E-value=3.4e-20  Score=200.61  Aligned_cols=286  Identities=16%  Similarity=0.252  Sum_probs=217.1

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccc-eEecc---ccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~-~~l~~---h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      ....+|+..++-..|+.++.. .+.||.+......... ...++   -...+..++|.....+ +|++++..|.|.+||+
T Consensus        40 ~~~nAIs~nr~~~qiv~AGrs-~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~~~~~N-lIAT~s~nG~i~vWdl  117 (839)
T KOG0269|consen   40 AKANAISVNRDINQIVVAGRS-LLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWGQLYSN-LIATCSTNGVISVWDL  117 (839)
T ss_pred             cccceEeecCCcceeEEeccc-ceeeEeeCcccCCcceeeecccccceeeehhhcccccchhh-hheeecCCCcEEEEec
Confidence            455677788888888888654 4788877654321111 01111   1124567788754444 8999999999999999


Q ss_pred             CC---CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCCEEEEEe
Q 001310          473 VT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSCG  548 (1103)
Q Consensus       473 ~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~  548 (1103)
                      ..   .+.+..|..|...+.+++|+... ..+|++|+.||+|++||++......++......|..+.|+| .+..++++.
T Consensus       118 nk~~rnk~l~~f~EH~Rs~~~ldfh~te-p~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~  196 (839)
T KOG0269|consen  118 NKSIRNKLLTVFNEHERSANKLDFHSTE-PNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIH  196 (839)
T ss_pred             CccccchhhhHhhhhccceeeeeeccCC-ccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEec
Confidence            87   66778899999999999999764 47999999999999999999999988888888999999999 556666665


Q ss_pred             cCCCCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      .    .|.+++||++.. +....+..|.   ++|.++.|+|++.+|++||.|+.|+|||+.+++.-.....+. ..++.+
T Consensus       197 d----sG~lqlWDlRqp~r~~~k~~AH~---GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInT-iapv~r  268 (839)
T KOG0269|consen  197 D----SGYLQLWDLRQPDRCEKKLTAHN---GPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINT-IAPVGR  268 (839)
T ss_pred             C----CceEEEeeccCchhHHHHhhccc---CceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEee-cceeee
Confidence            4    678999999864 4455666666   999999999999999999999999999998765433333222 357899


Q ss_pred             EEEecCCC-EEEEEE--CCCeEEEEEcCCC-CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310          628 ICFNKNGT-LLAVIA--NENRIKILETPES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1103)
Q Consensus       628 v~~s~~g~-~l~~~~--~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1103)
                      |.|-|+.. .|++++  .|..|+|||+... -+..++..|...++.++|.                     +.|...+.+
T Consensus       269 VkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~---------------------~~d~~~l~s  327 (839)
T KOG0269|consen  269 VKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWD---------------------SGDRINLWS  327 (839)
T ss_pred             eeeccCccchhhhhhccccceEEEEeeccccccceeeeccCccccceecc---------------------CCCceeeEe
Confidence            99999765 455554  3788999999866 4556778888888888887                     345566777


Q ss_pred             ecccccccccc
Q 001310          704 VEAENKSEVEK  714 (1103)
Q Consensus       704 ~~~d~~i~~w~  714 (1103)
                      ++.|+++..-.
T Consensus       328 ~sKD~tv~qh~  338 (839)
T KOG0269|consen  328 CSKDGTVLQHL  338 (839)
T ss_pred             ecCccHHHHhh
Confidence            77777765443

>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]

Probab=99.84  E-value=1.6e-19  Score=191.14  Aligned_cols=287  Identities=16%  Similarity=0.138  Sum_probs=202.3

Q ss_pred             CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCe
Q 001310          746 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV  824 (1103)
Q Consensus       746 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~  824 (1103)
                      ...|+.+..+|.|.++|.......               ++  ++.+..   ...|.+.|..+.+.|....|++++ |.+
T Consensus        64 eHiLavadE~G~i~l~dt~~~~fr---------------~e--e~~lk~---~~aH~nAifDl~wapge~~lVsasGDsT  123 (720)
T KOG0321|consen   64 EHILAVADEDGGIILFDTKSIVFR---------------LE--ERQLKK---PLAHKNAIFDLKWAPGESLLVSASGDST  123 (720)
T ss_pred             cceEEEecCCCceeeecchhhhcc---------------hh--hhhhcc---cccccceeEeeccCCCceeEEEccCCce
Confidence            345777788899999986553321               01  110111   115999999999999777777776 789


Q ss_pred             EEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-------------------------
Q 001310          825 ISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-------------------------  877 (1103)
Q Consensus       825 i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-------------------------  877 (1103)
                      +++||+++.++...  +.+|...|.+++|.|.+...+++|+.||.|.|||+.-..                         
T Consensus       124 ~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~  203 (720)
T KOG0321|consen  124 IRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPL  203 (720)
T ss_pred             eeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchh
Confidence            99999999988877  889999999999999888999999999999999986321                         


Q ss_pred             --eEEEeccCCCCEEE---EEEccCCCEEEEEeC-CCeEEEEEcCCCceeee-eeeec--CCCcccCCCCceEEEEcCCC
Q 001310          878 --VISKLEGHSKRVTG---LVFSDALNILVSSGG-DAQIFVWDVDGWGIQTC-RSLQT--PDGVMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       878 --~~~~l~~h~~~V~~---l~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~-~~~~~--~~~~~~~~~~v~~l~fs~dg  948 (1103)
                        .+....+|...|.+   +.+..|...||++|. |+.|+|||+........ .....  ...+..-...+.++.....|
T Consensus       204 ~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssG  283 (720)
T KOG0321|consen  204 KKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSG  283 (720)
T ss_pred             hccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCC
Confidence              01222345555665   666678899999988 99999999987442211 01111  11111112357778888888


Q ss_pred             CEEEE-EeCCeEEEEECCCceEEE-EeeCCC--CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCC
Q 001310          949 TRFLL-VHETHLAIYEAEELTCLK-QWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024 (1103)
Q Consensus       949 ~~l~~-~~d~~v~iwd~~~~~~~~-~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~ 1024 (1103)
                      .+|.+ +.|+.|+.|++.+...-. ..+.++  ..--..-..|||+.+|++|+.|...++|.+.+-+.--...       
T Consensus       284 t~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l-------  356 (720)
T KOG0321|consen  284 TYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL-------  356 (720)
T ss_pred             CeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------
Confidence            88887 699999999998643321 112233  1111223468999999999999999999998766432222       


Q ss_pred             CCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310         1025 TTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1025 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                                 .||.-.|+++.++.++.  .-++++++|-++++|++.
T Consensus       357 -----------~Ght~eVt~V~w~pS~~--t~v~TcSdD~~~kiW~l~  391 (720)
T KOG0321|consen  357 -----------LGHTREVTTVRWLPSAT--TPVATCSDDFRVKIWRLS  391 (720)
T ss_pred             -----------hCcceEEEEEeeccccC--CCceeeccCcceEEEecc
Confidence                       25777788766666655  568888999999999994

>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=5.7e-19  Score=170.71  Aligned_cols=268  Identities=14%  Similarity=0.208  Sum_probs=193.9

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--CC
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG  408 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg  408 (1103)
                      .+|.+-|.++.|.+-|++ +|+|+.|++|+|||.....---.       .        ....+.|.+.|..+.|.+  -|
T Consensus        10 s~h~DlihdVs~D~~GRR-mAtCSsDq~vkI~d~~~~s~~W~-------~--------Ts~Wrah~~Si~rV~WAhPEfG   73 (361)
T KOG2445|consen   10 SGHKDLIHDVSFDFYGRR-MATCSSDQTVKIWDSTSDSGTWS-------C--------TSSWRAHDGSIWRVVWAHPEFG   73 (361)
T ss_pred             cCCcceeeeeeecccCce-eeeccCCCcEEEEeccCCCCceE-------E--------eeeEEecCCcEEEEEecCcccc
Confidence            589999999999999996 89999999999999755432211       1        111556999999999976  59


Q ss_pred             CEEEEEeCCCeEEEEEecC------CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee----
Q 001310          409 SLLGVAYSKHIVQLYAYHG------GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----  478 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~------~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----  478 (1103)
                      +.+|+++.|+++.||.-..      +..-....++......|+.+.|.|.-..+.+++++.||.+|||+.-..-.+    
T Consensus        74 qvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~  153 (361)
T KOG2445|consen   74 QVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWT  153 (361)
T ss_pred             ceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccch
Confidence            9999999999999997621      112223345667788999999999877779999999999999986543322    


Q ss_pred             --EEee-------cCCCceEEEEeeecCCc-cEEEEEECC-----CeEEEEEcCCCCee----EEecCCCccEEEEEEcc
Q 001310          479 --YSFE-------GHGAPVYSLCPHAKENI-HFIFSISVD-----GKIKAWLYDSLGAR----VDYDAPGLGCTRMAYSA  539 (1103)
Q Consensus       479 --~~~~-------~~~~~v~~~~~~~~~~~-~~l~s~~~d-----g~i~iwd~~~~~~~----~~~~~~~~~i~~~~~s~  539 (1103)
                        ..+.       .+..+-.|+.|+++.-. .+|+.|+.+     +.+.||........    ..+..+..+|+.++|.|
T Consensus       154 Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP  233 (361)
T KOG2445|consen  154 LQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP  233 (361)
T ss_pred             hhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc
Confidence              2222       35566677777755432 456666655     47899987765532    25678888999999999


Q ss_pred             CC----CEEEEEecCCCCceeEEEEeCCCCe-----------------eEEEEecccccCCceEEEEEcCCCCEEEEEeC
Q 001310          540 NG----RRLFSCGTSKEGESFLVEWNESEGA-----------------IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  598 (1103)
Q Consensus       540 dg----~~l~~~~~~~~~~~~i~iwd~~~~~-----------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  598 (1103)
                      +-    ..|++++.    +| |+||.+....                 .+..+..+..|++.|..+.|+-.|..|.+.|.
T Consensus       234 n~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGd  308 (361)
T KOG2445|consen  234 NIGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGD  308 (361)
T ss_pred             ccCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCC
Confidence            52    34566654    44 9999887311                 12333333444599999999999999999999


Q ss_pred             CCcEEEEECCC---CeeEEEEcCC
Q 001310          599 DHVIKIWDMNK---VQLLTTIDAG  619 (1103)
Q Consensus       599 dg~i~iwd~~~---~~~~~~~~~~  619 (1103)
                      ||.||+|...-   .+++..+...
T Consensus       309 DG~VRLWkany~n~~kC~sv~~~e  332 (361)
T KOG2445|consen  309 DGCVRLWKANYNNLWKCTSVLKAE  332 (361)
T ss_pred             CceeeehhhhhhhhheeeeEEecc
Confidence            99999997643   3344445443

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.84  E-value=2.6e-19  Score=183.34  Aligned_cols=294  Identities=16%  Similarity=0.215  Sum_probs=216.9

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE--ECCCeEEEEEcCCCCeeEeccccccceeee
Q 001310          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI--ANENRIKILETPESNSVDAAGVLSDNLRKL  670 (1103)
Q Consensus       593 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~--~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~  670 (1103)
                      +..++....+++||....+....+..+...+.+.++.|+.... |+++  +.|..+++|.-.....              
T Consensus         5 l~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~~~n~-lvvas~~gdk~~~~~~K~g~~~--------------   69 (673)
T KOG4378|consen    5 LHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQRRNF-LVVASMAGDKVMRIKEKDGKTP--------------   69 (673)
T ss_pred             eeeeccCCceEEeecccccCccccccCCCCCcceeeeccccce-EEEeecCCceeEEEecccCCCC--------------
Confidence            3344445679999998877777766666666789999998654 4444  4567788886443200              


Q ss_pred             EEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEE
Q 001310          671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIF  750 (1103)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~  750 (1103)
                                                            +|-+-...                ....-.|++......+++
T Consensus        70 --------------------------------------~Vp~~~k~----------------~gd~~~Cv~~~s~S~y~~   95 (673)
T KOG4378|consen   70 --------------------------------------EVPRVRKL----------------TGDNAFCVACASQSLYEI   95 (673)
T ss_pred             --------------------------------------ccceeecc----------------ccchHHHHhhhhcceeee
Confidence                                                  00000000                011222333344457899


Q ss_pred             EeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC-CeEEEEE
Q 001310          751 ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYI  829 (1103)
Q Consensus       751 ~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d-g~i~iwd  829 (1103)
                      +++..+.|+|||+...                        +....+.  +|...|+++.+.-...+||++++ |.|.|..
T Consensus        96 sgG~~~~Vkiwdl~~k------------------------l~hr~lk--dh~stvt~v~YN~~DeyiAsvs~gGdiiih~  149 (673)
T KOG4378|consen   96 SGGQSGCVKIWDLRAK------------------------LIHRFLK--DHQSTVTYVDYNNTDEYIASVSDGGDIIIHG  149 (673)
T ss_pred             ccCcCceeeehhhHHH------------------------HHhhhcc--CCcceeEEEEecCCcceeEEeccCCcEEEEe
Confidence            9999999999997632                        1111222  48999999999999999999995 7899999


Q ss_pred             cCCceeeEEecCCCC-CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe-ccCCCCEEEEEEccCC-CEEEEEeC
Q 001310          830 VMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDAL-NILVSSGG  906 (1103)
Q Consensus       830 ~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg-~~l~s~s~  906 (1103)
                      +.++....+|....+ .|+-+.|+|....+|.+++.+|.|.+||+....+...+ +.|..+...++|+|.. .+|++.|.
T Consensus       150 ~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~  229 (673)
T KOG4378|consen  150 TKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGY  229 (673)
T ss_pred             cccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecc
Confidence            999988888876544 56689999966678888999999999999987766554 5699999999999964 77889999


Q ss_pred             CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEE
Q 001310          907 DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT  985 (1103)
Q Consensus       907 dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~  985 (1103)
                      |+.|.+||........  ++.       ...+...++|+++|.+|++| ..|.|..||++...........|...|++++
T Consensus       230 Dkki~~yD~~s~~s~~--~l~-------y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  230 DKKINIYDIRSQASTD--RLT-------YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA  300 (673)
T ss_pred             cceEEEeecccccccc--eee-------ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence            9999999998744222  111       11268899999999999997 8899999999987766666788999999999


Q ss_pred             EccCC
Q 001310          986 FSCDC  990 (1103)
Q Consensus       986 fs~dg  990 (1103)
                      |-+..
T Consensus       301 fq~s~  305 (673)
T KOG4378|consen  301 FQPSP  305 (673)
T ss_pred             eeecc
Confidence            97754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.84  E-value=2e-16  Score=184.42  Aligned_cols=373  Identities=23%  Similarity=0.391  Sum_probs=286.6

Q ss_pred             EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEeecCCC-ceEEEEeeecCCcc-EEEEEEC-CCeE
Q 001310          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGA-PVYSLCPHAKENIH-FIFSISV-DGKI  511 (1103)
Q Consensus       436 ~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~-~v~~~~~~~~~~~~-~l~s~~~-dg~i  511 (1103)
                      .+..|...+..+.|.+.+.  .++.++.|+.+.+|+...+. .+..+.++.. .+..+.+. ..++. .++..+. |+.+
T Consensus        60 ~~~~~~~~i~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~  136 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE--LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS-SPDGNSILLASSSLDGTV  136 (466)
T ss_pred             eeeeccceEEEEEECCCCc--EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE-CCCcceEEeccCCCCccE
Confidence            3567999999999999999  78888899999999998887 6777776443 77777775 55555 5555444 9999


Q ss_pred             EEEEcCC-CCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCC
Q 001310          512 KAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  590 (1103)
Q Consensus       512 ~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1103)
                      .+|+... ......+..+...+..++|+|+++.+++++.   .++.+.+|+...+..+..+.+|.   ..+.+++|+|++
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~  210 (466)
T COG2319         137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSS---LDGTIKLWDLRTGKPLSTLAGHT---DPVSSLAFSPDG  210 (466)
T ss_pred             EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCC---CCCceEEEEcCCCceEEeeccCC---CceEEEEEcCCc
Confidence            9999998 7777788889999999999999998877743   36779999999988888888866   899999999999


Q ss_pred             C-EEEEEeCCCcEEEEECCCCeeEE-EEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe-eEeccccccce
Q 001310          591 D-QILAAGDDHVIKIWDMNKVQLLT-TIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS-VDAAGVLSDNL  667 (1103)
Q Consensus       591 ~-~l~~~~~dg~i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~~~i  667 (1103)
                      . .+++++.|+.|++||...+..+. .+..+...  . ...|+|++.++++++.|+.+++|+...... +...       
T Consensus       211 ~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------  280 (466)
T COG2319         211 GLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS--V-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL-------  280 (466)
T ss_pred             ceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc--e-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE-------
Confidence            8 44555899999999988777777 56655432  2 228999998999999999999999886532 1100       


Q ss_pred             eeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc
Q 001310          668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ  747 (1103)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  747 (1103)
                                                                                     ..|...+.++.|.|++.
T Consensus       281 ---------------------------------------------------------------~~~~~~v~~~~~~~~~~  297 (466)
T COG2319         281 ---------------------------------------------------------------SGHSSSVLSVAFSPDGK  297 (466)
T ss_pred             ---------------------------------------------------------------ecCCccEEEEEECCCCC
Confidence                                                                           11456778888999888


Q ss_pred             EEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE--cCCeE
Q 001310          748 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA--SGGVI  825 (1103)
Q Consensus       748 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~--~dg~i  825 (1103)
                      .+++++.++.+.+|+......                      .....  ...|...+..+.+.+++..++.+  .++.+
T Consensus       298 ~~~~~~~d~~~~~~~~~~~~~----------------------~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~  353 (466)
T COG2319         298 LLASGSSDGTVRLWDLETGKL----------------------LSSLT--LKGHEGPVSSLSFSPDGSLLVSGGSDDGTI  353 (466)
T ss_pred             EEEEeeCCCcEEEEEcCCCce----------------------EEEee--ecccCCceEEEEECCCCCEEEEeecCCCcE
Confidence            888888888888887654321                      11111  11366678888884343556555  36889


Q ss_pred             EEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEE-EeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEE
Q 001310          826 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS  904 (1103)
Q Consensus       826 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~  904 (1103)
                      .+|+............. ..+..+.+++ + ..++. +..++.+.+|+............+...+....+++++..++++
T Consensus       354 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  430 (466)
T COG2319         354 RLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASG  430 (466)
T ss_pred             EeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCceEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEe
Confidence            99999887733333322 2288999998 7 55555 8899999999999988777776554789999999999999999


Q ss_pred             eCCCeEEEEEcCC
Q 001310          905 GGDAQIFVWDVDG  917 (1103)
Q Consensus       905 s~dg~I~iwd~~~  917 (1103)
                      +.++.+++|+...
T Consensus       431 ~~~~~~~~~~~~~  443 (466)
T COG2319         431 SSDNTIRLWDLKT  443 (466)
T ss_pred             cCCCcEEEEeccC
Confidence            9999999999987

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.83  E-value=6.5e-17  Score=188.45  Aligned_cols=369  Identities=22%  Similarity=0.349  Sum_probs=274.8

Q ss_pred             ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC-eeeeeeeeEeeccccccceeeeeccCCC-ccEEEEEE-C
Q 001310          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ-KLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVW-S  405 (1103)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~-s  405 (1103)
                      .+..|...|.++.|.+.+. .++.++.|+.+.+|+...+. ....                   +.++. ..+..+.+ +
T Consensus        60 ~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~  119 (466)
T COG2319          60 LLRGHEDSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLIKS-------------------LEGLHDSSVSKLALSS  119 (466)
T ss_pred             eeeeccceEEEEEECCCCc-EEEEecCCCcEEEEEcCCCceeEEE-------------------EeccCCCceeeEEEEC
Confidence            5678999999999999998 67888899999999998886 3332                   22322 46777777 8


Q ss_pred             CCCC-EEEEEeC-CCeEEEEEecC-CCccccceEeccccccEEEEEEecCCCceEEEEEcC-CCceEEEeCCCCceeEEe
Q 001310          406 PDGS-LLGVAYS-KHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSF  481 (1103)
Q Consensus       406 pdg~-~las~~~-d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~  481 (1103)
                      +++. +++..+. |+.+.+|+... ....   ..+..|...|..++|+|++.  .+++++. |+.+++|++.++..+..+
T Consensus       120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~  194 (466)
T COG2319         120 PDGNSILLASSSLDGTVKLWDLSTPGKLI---RTLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL  194 (466)
T ss_pred             CCcceEEeccCCCCccEEEEEecCCCeEE---EEEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence            8888 5555444 89999999987 4322   36789999999999999999  6777775 999999999999999999


Q ss_pred             ecCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      .+|...|.++++.  +++. .+++++.|+.+++||...+.... .+..+.... ...|++++..+++++.    ++.+++
T Consensus       195 ~~~~~~v~~~~~~--~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~  267 (466)
T COG2319         195 AGHTDPVSSLAFS--PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL  267 (466)
T ss_pred             ccCCCceEEEEEc--CCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence            9999999999997  4555 55666999999999888666666 566666664 3389999988886654    667999


Q ss_pred             EeCCCCee-EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc--CCCCCCCCceEEEecCCCE
Q 001310          560 WNESEGAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID--AGGGLPENPRICFNKNGTL  636 (1103)
Q Consensus       560 wd~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~--~~~~~~~v~~v~~s~~g~~  636 (1103)
                      |+...... ...+.+|.   ..+.++.|.|++..+++++.|+.+.+|+...........  .+.  ..+..+.|.+++..
T Consensus       268 ~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~  342 (466)
T COG2319         268 WDLRSSSSLLRTLSGHS---SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHE--GPVSSLSFSPDGSL  342 (466)
T ss_pred             eeecCCCcEEEEEecCC---ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccC--CceEEEEECCCCCE
Confidence            99987665 44444444   889999999988899888888999999998887776665  332  25788888433356


Q ss_pred             EEEE-ECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee-ecccccccccc
Q 001310          637 LAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS-VEAENKSEVEK  714 (1103)
Q Consensus       637 l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s-~~~d~~i~~w~  714 (1103)
                      ++.+ ..|+.+.+|+............... +..+.+.                      ++ ..... +..++.+.+|+
T Consensus       343 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~----------------------~~-~~~~~~~~~~~~~~~~~  398 (466)
T COG2319         343 LVSGGSDDGTIRLWDLRTGKPLKTLEGHSN-VLSVSFS----------------------PD-GRVVSSGSTDGTVRLWD  398 (466)
T ss_pred             EEEeecCCCcEEeeecCCCceeEEecCCce-EEEEEEC----------------------CC-CCEEEEecCCCceEEEe
Confidence            6665 6788999999988762222222211 4445554                      22 22333 57788999999


Q ss_pred             ccccCCccceeeeccCcccc-ccEEEEEEecCCcEEEEeecCceEEEeecCC
Q 001310          715 PLFARPSECQSLLLPSKVKA-NKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1103)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~-~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~  765 (1103)
                      ...........       .. ..+....+++++..++.++.++.+++|+...
T Consensus       399 ~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  443 (466)
T COG2319         399 LSTGSLLRNLD-------GHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT  443 (466)
T ss_pred             cccCeeeeecc-------CCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence            76432221111       11 6888999999999999988999999998654

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.83  E-value=1.4e-19  Score=183.82  Aligned_cols=244  Identities=15%  Similarity=0.180  Sum_probs=188.2

Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEe------------------ccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI------------------DAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l------------------~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~  468 (1103)
                      -|+|+|.|+.|..|.|||+.-...+.+...|                  .+|+..|.+++|+..-+. +|+|||.|.+|+
T Consensus       191 ~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~  269 (463)
T KOG0270|consen  191 AGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVK  269 (463)
T ss_pred             CcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEE
Confidence            3789999999999999998643332222222                  379999999999988777 899999999999


Q ss_pred             EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      +||+.+|++..++..|.+.|.++.|++. ...+|++|+.|++|.+.|.+........-...+.|..++|.|.....+.++
T Consensus       270 lWD~~~g~p~~s~~~~~k~Vq~l~wh~~-~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~  348 (463)
T KOG0270|consen  270 LWDVDTGKPKSSITHHGKKVQTLEWHPY-EPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVS  348 (463)
T ss_pred             EEEcCCCCcceehhhcCCceeEEEecCC-CceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEe
Confidence            9999999999999999999999999976 557999999999999999985333222222345788899999877766665


Q ss_pred             cCCCCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCc
Q 001310          549 TSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1103)
                      .   .+|+++-+|++.. +++.+++.|.   +.|.++++++... .+++++.|+.|++|++..-.........-......
T Consensus       349 t---ddG~v~~~D~R~~~~~vwt~~AHd---~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~  422 (463)
T KOG0270|consen  349 T---DDGTVYYFDIRNPGKPVWTLKAHD---DEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLH  422 (463)
T ss_pred             c---CCceEEeeecCCCCCceeEEEecc---CCcceEEecCCCCcceeeccccceEEEEeecCCCCccccccccccccee
Confidence            4   2788999999865 8889999888   8999999988754 56779999999999987544322221111122345


Q ss_pred             eEEEecCC-CEEEEEECCCeEEEEEcCCCCeeE
Q 001310          627 RICFNKNG-TLLAVIANENRIKILETPESNSVD  658 (1103)
Q Consensus       627 ~v~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~  658 (1103)
                      |+++.|+- -.++.|+..+.+++||+.+...+.
T Consensus       423 c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  423 CFALDPDVAFTLAFGGEKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ecccCCCcceEEEecCccceEEEeecccChhHH
Confidence            67777754 367778888889999998775543

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.83  E-value=4.4e-19  Score=176.10  Aligned_cols=258  Identities=16%  Similarity=0.191  Sum_probs=190.3

Q ss_pred             CCCCCeeEEEEecCCCEEEEE--c-CCeEEEEEcCC----------------ceeeEEecCCCCCeeEEEEcCCCCCEEE
Q 001310          800 NSQEAVPCFALSKNDAYLFSA--S-GGVISLYIVMT----------------FKTILTIMPPSPTATSLAFNPHDNNVIA  860 (1103)
Q Consensus       800 ~~~~~v~~l~~s~d~~~l~~~--~-dg~i~iwd~~~----------------~~~~~~~~~~~~~i~~l~~s~~d~~~la  860 (1103)
                      +|.+.+..+..++-++-.+++  + .|.|+||++..                .+.+.++.+|...=.+|+|||-..-.|+
T Consensus       149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll  228 (440)
T KOG0302|consen  149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL  228 (440)
T ss_pred             ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence            477778888877765444444  4 49999999852                3456678889989999999995455788


Q ss_pred             EEeCCCeEEEEEcCCcee---EEEeccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310          861 IGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1103)
Q Consensus       861 sg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1103)
                      +|.--+.|++|...+|.-   ...|.+|+..|-.|+|||. ...|+|||.||+|+|||+..+........   ..|.   
T Consensus       229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~---  302 (440)
T KOG0302|consen  229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHN---  302 (440)
T ss_pred             cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccC---
Confidence            898889999999998753   2557789999999999996 47899999999999999999865443333   2232   


Q ss_pred             CCceEEEEcCCCCEEEEE-eCCeEEEEECCC---ceEEEEeeCCCCcCeEEEEEccC-CCEEEEEecCCcEEEEeCCCce
Q 001310          937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEE---LTCLKQWFPISSVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       937 ~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~---~~~~~~~~~~h~~~v~~l~fs~d-g~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      +.|..+.|+.+-.+||+| .||++.|||+++   ++.+.. +..|..+|+++.|+|. ...+++++.|..|.+||+.-..
T Consensus       303 sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~-fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~  381 (440)
T KOG0302|consen  303 SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVAT-FKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA  381 (440)
T ss_pred             CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCccee-EEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence            269999999999989986 789999999975   455555 6679999999999984 4678888899999999997432


Q ss_pred             e---EEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1012 V---QCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1012 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      -   ..... ..++.   .....+.|-.-.+..+.  .+.||++-+.++++.+.|| +.||..
T Consensus       382 D~ee~~~~a-~~~L~---dlPpQLLFVHqGQke~K--evhWH~QiPG~lvsTa~dG-fnVfkt  437 (440)
T KOG0302|consen  382 DEEEIDQEA-AEGLQ---DLPPQLLFVHQGQKEVK--EVHWHRQIPGLLVSTAIDG-FNVFKT  437 (440)
T ss_pred             Chhhhcccc-ccchh---cCCceeEEEecchhHhh--hheeccCCCCeEEEecccc-eeEEEe
Confidence            2   11111 00111   11122333332333344  6789999999999999999 466653

>KOG4328 consensus WD40 protein [Function unknown]

Probab=99.83  E-value=8.5e-19  Score=178.63  Aligned_cols=310  Identities=13%  Similarity=0.110  Sum_probs=223.1

Q ss_pred             CCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcc
Q 001310          653 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKV  732 (1103)
Q Consensus       653 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~  732 (1103)
                      .-......+.+...|++++|.|.                    ...+.+++|+..|.|-+||+....+.......+.  .
T Consensus       175 ~~~~~~v~kv~~~Rit~l~fHPt--------------------~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~--~  232 (498)
T KOG4328|consen  175 DYRILNVAKVTDRRITSLAFHPT--------------------ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFT--P  232 (498)
T ss_pred             cceecceeEecccceEEEEeccc--------------------CcceEEEEccCCCcEEEEecCCCCCccCceEEec--c
Confidence            33444556667788899999873                    3457788999999999999975444444443333  4


Q ss_pred             ccccEEEEEEecCC-cEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe
Q 001310          733 KANKISRLTYNNGG-QAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  811 (1103)
                      |..+|.++.|+|.. ..+++.+.||++++-|+.......                    ++..+    .....+..+.|+
T Consensus       233 hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~--------------------v~s~~----~d~~~fs~~d~~  288 (498)
T KOG4328|consen  233 HSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEE--------------------VLSLD----TDNIWFSSLDFS  288 (498)
T ss_pred             CCccccceEecCCChhheeeeccCceeeeeeecchhhHH--------------------HhhcC----ccceeeeecccc
Confidence            89999999999954 568899999999998876543200                    11100    134566778888


Q ss_pred             cCCCEEEEEcC-CeEEEEEcCCcee-eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eEEEeccC
Q 001310          812 KNDAYLFSASG-GVISLYIVMTFKT-ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGH  885 (1103)
Q Consensus       812 ~d~~~l~~~~d-g~i~iwd~~~~~~-~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h  885 (1103)
                      .+...++.+.+ |...+||..++.. ...+.-|...|++++++|....+||+++.|++++|||++.-.    ++-....|
T Consensus       289 ~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~H  368 (498)
T KOG4328|consen  289 AESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPH  368 (498)
T ss_pred             CCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccc
Confidence            88877777774 8899999987654 566777888999999999888899999999999999998632    12333459


Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC--CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEE
Q 001310          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIY  962 (1103)
Q Consensus       886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iw  962 (1103)
                      ...|.+..|||++..|++.+.|..|+|||..-  ........+.....+..+ ....-.+|.||..++++| .-..|-|+
T Consensus       369 rrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~Rw-lT~fKA~W~P~~~li~vg~~~r~IDv~  447 (498)
T KOG4328|consen  369 RRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRW-LTPFKAAWDPDYNLIVVGRYPRPIDVF  447 (498)
T ss_pred             cceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCccccc-ccchhheeCCCccEEEEeccCcceeEE
Confidence            99999999999998899999999999999951  111111122211111000 134567899999999997 67789999


Q ss_pred             ECCCceEEEEeeCCCCcCeEE-EEEccCCCEEEEE-ecCCcEEEEeCCC
Q 001310          963 EAEELTCLKQWFPISSVPISQ-ATFSCDCRMVFTS-FVDGTLSIHEASN 1009 (1103)
Q Consensus       963 d~~~~~~~~~~~~~h~~~v~~-l~fs~dg~~l~t~-~~dg~v~vWd~~~ 1009 (1103)
                      |-..++.+..+.......|.+ ..|.|-+..+++| +..|.|+||--+.
T Consensus       448 ~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k~  496 (498)
T KOG4328|consen  448 DGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNKK  496 (498)
T ss_pred             cCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecCC
Confidence            999999888765555555655 4688987755555 4668888886543

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.83  E-value=4.9e-20  Score=209.09  Aligned_cols=253  Identities=15%  Similarity=0.251  Sum_probs=206.9

Q ss_pred             CccEEEEEECCCCCE----EEEEeCCCeEEEEEecC---CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310          396 GVSVNRVVWSPDGSL----LGVAYSKHIVQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~----las~~~d~~i~iwd~~~---~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~  468 (1103)
                      ..+.+.++|++.|..    ||.|..||.|.+||...   +.....+.....|.+.|..+.|++.... +|++|+.||.|.
T Consensus        64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~  142 (1049)
T KOG0307|consen   64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEIL  142 (1049)
T ss_pred             cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEE
Confidence            467889999997776    88889999999999876   4444445567789999999999998876 899999999999


Q ss_pred             EEeCCCCceeEEee--cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc--cEEEEEEccCCCEE
Q 001310          469 VWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCTRMAYSANGRRL  544 (1103)
Q Consensus       469 iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~~~~s~dg~~l  544 (1103)
                      |||+..-+.-.+..  ...+.|.+++|+- ...+.|++++.+|.+.|||++..+.+..+..+..  .+..++|+|++..-
T Consensus       143 iWDlnn~~tP~~~~~~~~~~eI~~lsWNr-kvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTq  221 (1049)
T KOG0307|consen  143 IWDLNKPETPFTPGSQAPPSEIKCLSWNR-KVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQ  221 (1049)
T ss_pred             EeccCCcCCCCCCCCCCCcccceEeccch-hhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCcee
Confidence            99998866555542  2457799999974 3557899999999999999999887776665544  57889999987654


Q ss_pred             EEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC
Q 001310          545 FSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL  622 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  622 (1103)
                      +....+.+....|.+||++. ...++.+++|.   ..|.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+  
T Consensus       222 l~~As~dd~~PviqlWDlR~assP~k~~~~H~---~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~--  296 (1049)
T KOG0307|consen  222 LLVASGDDSAPVIQLWDLRFASSPLKILEGHQ---RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQG--  296 (1049)
T ss_pred             eeeecCCCCCceeEeecccccCCchhhhcccc---cceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCC--
Confidence            44344456688999999874 45677788888   899999999987 778889999999999999999999998743  


Q ss_pred             CCCceEEEecCCC-EEEEEECCCeEEEEEcCCCC
Q 001310          623 PENPRICFNKNGT-LLAVIANENRIKILETPESN  655 (1103)
Q Consensus       623 ~~v~~v~~s~~g~-~l~~~~~dg~i~iw~~~~~~  655 (1103)
                      ..+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus       297 nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  297 NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            4688999999655 88999999999999988653

>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]

Probab=99.82  E-value=9.9e-19  Score=179.14  Aligned_cols=289  Identities=13%  Similarity=0.180  Sum_probs=217.9

Q ss_pred             CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE-EEEEeCCCeEEEEEecCCCc-cccc
Q 001310          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL-LGVAYSKHIVQLYAYHGGSD-ARQQ  434 (1103)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~-las~~~d~~i~iwd~~~~~~-~~~~  434 (1103)
                      .+++|||+...+....+.                 .....-.+.++.|+....+ +|+.+.|..|++|.-..... +...
T Consensus        12 d~~kl~D~s~~~~~~~~~-----------------~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~   74 (673)
T KOG4378|consen   12 DKTKLSDFSDLETKSEYV-----------------HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV   74 (673)
T ss_pred             CceEEeecccccCccccc-----------------cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence            579999987655432100                 0111234889999986642 33446778899997654311 1111


Q ss_pred             eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEE
Q 001310          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW  514 (1103)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iw  514 (1103)
                      ....+.  .-.|++......  ++++|+..+.|+|||++...+.+.+++|...|+++.++.  .+.+|++++..|-|.+.
T Consensus        75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~--~DeyiAsvs~gGdiiih  148 (673)
T KOG4378|consen   75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN--TDEYIASVSDGGDIIIH  148 (673)
T ss_pred             eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC--CcceeEEeccCCcEEEE
Confidence            122222  223333333334  899999999999999998888889999999999999854  55799999999999999


Q ss_pred             EcCCCCeeEEecCC-CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCE-
Q 001310          515 LYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ-  592 (1103)
Q Consensus       515 d~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-  592 (1103)
                      .+.++.....+... +..+.-+.|+|..+.+++...+   +|.|.+||+.....+..+..  .|..+...++|+|.... 
T Consensus       149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd---~G~VtlwDv~g~sp~~~~~~--~HsAP~~gicfspsne~l  223 (673)
T KOG4378|consen  149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASD---KGAVTLWDVQGMSPIFHASE--AHSAPCRGICFSPSNEAL  223 (673)
T ss_pred             ecccCccccceecCCCCeEEEeecccccceeeEeecc---CCeEEEEeccCCCcccchhh--hccCCcCcceecCCccce
Confidence            99988877777766 4456689999998887766542   77899999988777665543  23588899999997654 


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC-CeeEeccccccceeeeE
Q 001310          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES-NSVDAAGVLSDNLRKLS  671 (1103)
Q Consensus       593 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~-~~~~~~~~~~~~i~~~~  671 (1103)
                      |++.+.|..|.+||.........+...   .+...++|+++|.+|+.|...|.|..||+... .++..+..|...|++++
T Consensus       224 ~vsVG~Dkki~~yD~~s~~s~~~l~y~---~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va  300 (673)
T KOG4378|consen  224 LVSVGYDKKINIYDIRSQASTDRLTYS---HPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA  300 (673)
T ss_pred             EEEecccceEEEeecccccccceeeec---CCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence            566899999999999988777777654   34789999999999999999999999999854 67888899999999999


Q ss_pred             EecCC
Q 001310          672 VNPIS  676 (1103)
Q Consensus       672 ~~~~~  676 (1103)
                      |-|..
T Consensus       301 fq~s~  305 (673)
T KOG4378|consen  301 FQPSP  305 (673)
T ss_pred             eeecc
Confidence            98754

>KOG0302 consensus Ribosome Assembly protein [General function prediction only]

Probab=99.81  E-value=1.7e-18  Score=171.95  Aligned_cols=259  Identities=16%  Similarity=0.199  Sum_probs=182.9

Q ss_pred             ccCCcCceEEEecCCCc-eEEEEEcCCCcEEEEECCCCCee-eeeeeeEeeccccccceeeeeccCCCccEEEEEECC-C
Q 001310          331 IEGSSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-D  407 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~-~llasgs~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-d  407 (1103)
                      ..|.+.+..+.-++-|+ .++|+=+..|.|.|||+...-.. ..-.+.+-+  ....  ....+.+|.+.=+.++||| .
T Consensus       148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~--s~~~--Pl~t~~ghk~EGy~LdWSp~~  223 (440)
T KOG0302|consen  148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD--SEFR--PLFTFNGHKGEGYGLDWSPIK  223 (440)
T ss_pred             cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc--cccC--ceEEecccCccceeeeccccc
Confidence            46777888888877653 35666677899999998532110 000000000  0011  1223778999999999999 2


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC---ceeEEeecC
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGH  484 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~  484 (1103)
                      -..|++|.--+.|++|...+|.-..-...+.+|+..|-.++|||..+. +|+|||-||+|+|||++.+   .++.+ +.|
T Consensus       224 ~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~~~~~-kAh  301 (440)
T KOG0302|consen  224 TGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKAAVST-KAH  301 (440)
T ss_pred             ccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccceeEe-ecc
Confidence            334778877788999999987644444467789999999999998776 8999999999999999988   34443 889


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC---CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1103)
                      .+.|+.|.|+..  -.+|++|+.||+++|||++.-   +.+..++.|..+|+++.|+|.....+.++.   .+.+|.+||
T Consensus       302 ~sDVNVISWnr~--~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---~D~QitiWD  376 (440)
T KOG0302|consen  302 NSDVNVISWNRR--EPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---EDNQITIWD  376 (440)
T ss_pred             CCceeeEEccCC--cceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc---CCCcEEEEE
Confidence            999999999643  349999999999999999864   456688999999999999996555444432   267799999


Q ss_pred             CCCCee----------------EEEEecccccCCceEEEEEcCCC-CEEEEEeCCCc
Q 001310          562 ESEGAI----------------KRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHV  601 (1103)
Q Consensus       562 ~~~~~~----------------~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~  601 (1103)
                      +....-                -+.+-.|. ....+..+.|++.- .++++.+.||.
T Consensus       377 lsvE~D~ee~~~~a~~~L~dlPpQLLFVHq-GQke~KevhWH~QiPG~lvsTa~dGf  432 (440)
T KOG0302|consen  377 LSVEADEEEIDQEAAEGLQDLPPQLLFVHQ-GQKEVKEVHWHRQIPGLLVSTAIDGF  432 (440)
T ss_pred             eeccCChhhhccccccchhcCCceeEEEec-chhHhhhheeccCCCCeEEEecccce
Confidence            863211                01122222 12467778888764 35666667763

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.81  E-value=4.6e-18  Score=165.37  Aligned_cols=287  Identities=14%  Similarity=0.211  Sum_probs=206.8

Q ss_pred             eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccce--eeeeccCCCccEEEEEEC-------CCC
Q 001310          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF--KTALVRDPGVSVNRVVWS-------PDG  408 (1103)
Q Consensus       338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~h~~~V~~~~~s-------pdg  408 (1103)
                      ..+.|||||.- +.+-+.|..+.+|++...-.-..-        .....+  ...+--.....|...+|-       |+.
T Consensus        53 kgckWSPDGSc-iL~~sedn~l~~~nlP~dlys~~~--------~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t  123 (406)
T KOG2919|consen   53 KGCKWSPDGSC-ILSLSEDNCLNCWNLPFDLYSKKA--------DGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST  123 (406)
T ss_pred             ccceeCCCCce-EEeecccCeeeEEecChhhcccCC--------CCccccccceeEEeccCCEEEEEEeeeccccCCCcc
Confidence            35689999994 677789999999998532110000        000000  000011134567777764       678


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEecccccc---EEEEEEecCCCceEEEEEcCCCceEEEeC-CCCcee--EEe-
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGN---VNDLAFSAPCKQISVITCGDDKTIKVWDA-VTGSRT--YSF-  481 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~---v~~~~~s~d~~~~~l~s~~~d~~i~iwd~-~~~~~~--~~~-  481 (1103)
                      .++|+.+.+.-|++||.-+|+...... .-.|...   ..+++|+|||.  .|++ +....|+++|+ +.|+.-  +.. 
T Consensus       124 ~l~a~ssr~~PIh~wdaftG~lraSy~-~ydh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~  199 (406)
T KOG2919|consen  124 NLFAVSSRDQPIHLWDAFTGKLRASYR-AYDHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTV  199 (406)
T ss_pred             ceeeeccccCceeeeeccccccccchh-hhhhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhh
Confidence            899999999999999999997544322 2235443   46899999999  4654 45779999998 455432  221 


Q ss_pred             ----ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          482 ----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       482 ----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                          .+..+.+.+++|+|. +...++.++...++-|+.-........+.++.+.|+.+.|.++|+.|++++..   +-.|
T Consensus       200 ~~~k~gq~giisc~a~sP~-~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk---~dkI  275 (406)
T KOG2919|consen  200 TKGKFGQKGIISCFAFSPM-DSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARK---DDKI  275 (406)
T ss_pred             hcccccccceeeeeeccCC-CCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccC---CCeE
Confidence                133677888899876 45689999999999999999999999999999999999999999999998863   4569


Q ss_pred             EEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCCCCCceEEEecCCC
Q 001310          558 VEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGT  635 (1103)
Q Consensus       558 ~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~  635 (1103)
                      ..||++. +.++..+..|....+.-.-....|++++|++|+.||.|++||+.+ +..+..+..+.  ..++.++++|--.
T Consensus       276 l~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~s--d~vNgvslnP~mp  353 (406)
T KOG2919|consen  276 LCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYS--DTVNGVSLNPIMP  353 (406)
T ss_pred             EEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccccccc--ccccceecCcccc
Confidence            9999985 556667777663222333355678899999999999999999998 66666665553  3589999999877


Q ss_pred             EEEEEECC
Q 001310          636 LLAVIANE  643 (1103)
Q Consensus       636 ~l~~~~~d  643 (1103)
                      ++++++..
T Consensus       354 ilatssGq  361 (406)
T KOG2919|consen  354 ILATSSGQ  361 (406)
T ss_pred             eeeeccCc
Confidence            77777653

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.81  E-value=8.2e-17  Score=174.03  Aligned_cols=603  Identities=12%  Similarity=0.124  Sum_probs=357.1

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC------
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------  407 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd------  407 (1103)
                      ...-.++.|+|.|  ++|-|+. ..|.+-|..+-+.+..                   +.-|...|+.+.|+|-      
T Consensus        15 ~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iqs-------------------ie~h~s~V~~VrWap~~~p~~l   72 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQS-------------------IELHQSAVTSVRWAPAPSPRDL   72 (1062)
T ss_pred             cccccccccCccc--eEEEecC-ceEEEEehhhhhhhhc-------------------cccCccceeEEEeccCCCchhc
Confidence            3457789999999  6788775 6789999988887765                   5568999999999873      


Q ss_pred             C------CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec---CCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          408 G------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       408 g------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      +      -+||++...|.|.+||...+..+.   .+..|..++..++|-+   +.+. +|+.-....++.+|+..+|+..
T Consensus        73 lS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k~  148 (1062)
T KOG1912|consen   73 LSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEKF  148 (1062)
T ss_pred             cCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCcee
Confidence            1      267888888999999999886554   5778889999999865   3434 5666667789999999999999


Q ss_pred             EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC------eeEEec-CCCc---------------------
Q 001310          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG------ARVDYD-APGL---------------------  530 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~-~~~~---------------------  530 (1103)
                      ...........++.+.|-.. ..+..-+..|.+.+.+.-...      ....+. .+..                     
T Consensus       149 Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa  227 (1062)
T KOG1912|consen  149 WKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASA  227 (1062)
T ss_pred             eccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcch
Confidence            88776667777787776543 445555555666655432111      111111 1100                     


Q ss_pred             ----cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC--CCEEEEEeCCCcEEE
Q 001310          531 ----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKI  604 (1103)
Q Consensus       531 ----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~i  604 (1103)
                          -...++|+|.-+.++.....+    -+.++|++-...+....-..   +.+.-+.+-|+  ...++++-.||.+.+
T Consensus       228 ~fity~a~faf~p~~rn~lfi~~pr----ellv~dle~~~~l~vvpier---~~akfv~vlP~~~rd~LfclH~nG~lti  300 (1062)
T KOG1912|consen  228 YFITYCAQFAFSPHWRNILFITFPR----ELLVFDLEYECCLAVVPIER---GGAKFVDVLPDPRRDALFCLHSNGRLTI  300 (1062)
T ss_pred             hHHHHHHhhhcChhhhceEEEEecc----ceEEEcchhhceeEEEEecc---CCcceeEeccCCCcceEEEEecCCeEEE
Confidence                012356788655544444433    39999999888887776655   55566666665  457899999999999


Q ss_pred             EECCCC----------------eeEEEEcCCCCCCCCceEEEecC-CCEEEEEECCCeEEEEEcCCCCeeEecc------
Q 001310          605 WDMNKV----------------QLLTTIDAGGGLPENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAG------  661 (1103)
Q Consensus       605 wd~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~------  661 (1103)
                      |-.+..                +....+..-... .....+..|. ...+++.-.+|...+|.+.+++.-....      
T Consensus       301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel  379 (1062)
T KOG1912|consen  301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIEL  379 (1062)
T ss_pred             EEeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccc
Confidence            976541                111111111111 1122233343 4455666667888889888654321111      


Q ss_pred             -------------------------ccccceeeeEEecCCceeeeeccCCceEecCCCCCC--Cccceeecccccccccc
Q 001310          662 -------------------------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED--VKPEISVEAENKSEVEK  714 (1103)
Q Consensus       662 -------------------------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d--~~~l~s~~~d~~i~~w~  714 (1103)
                                               +|.....+....|...........      +...|.  -.+++.|...|+|.+.|
T Consensus       380 ~~pf~f~~~~~~v~k~~l~~LS~dg~h~sGs~~~~~~p~p~~t~~~~~p------~~n~~~~~~pLvAvGT~sGTV~vvd  453 (1062)
T KOG1912|consen  380 VLPFDFNLSTKLVGKTSLISLSDDGSHSSGSTCVRMRPMPELTKVENDP------GGNTPAGTVPLVAVGTNSGTVDVVD  453 (1062)
T ss_pred             cccccccCceeehhhccccchhhcCCCCCCceeeecccCcccceeecCC------CCCccceeeeeEEeecCCceEEEEE
Confidence                                     111112222222111110000000      000111  23567899999999999


Q ss_pred             ccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeec
Q 001310          715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVN  794 (1103)
Q Consensus       715 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  794 (1103)
                      +.++.......      .|...|.++.|....+.+-.+... .-.            ........+.+-+..+|......
T Consensus       454 vst~~v~~~fs------vht~~VkgleW~g~sslvSfsys~-~n~------------~sg~vrN~l~vtdLrtGlsk~fR  514 (1062)
T KOG1912|consen  454 VSTNAVAASFS------VHTSLVKGLEWLGNSSLVSFSYSH-VNS------------ASGGVRNDLVVTDLRTGLSKRFR  514 (1062)
T ss_pred             ecchhhhhhhc------ccccceeeeeeccceeEEEeeecc-ccc------------cccceeeeEEEEEcccccccccc
Confidence            87654443333      388899999998877744333321 000            00000123556667777644433


Q ss_pred             cCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEc-CC---------------CCC
Q 001310          795 DTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFN-PH---------------DNN  857 (1103)
Q Consensus       795 ~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s-~~---------------d~~  857 (1103)
                      .++. ....+|+.+..|.-|+|++..- +.-+.+||+.+..+++...-.-.-++.+.|+ |.               ..+
T Consensus       515 ~l~~-~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~a~P~it~leWsl~~~~si~qk~ls~q~sms~n  593 (1062)
T KOG1912|consen  515 GLQK-PDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSLALPLITVLEWSLPKHPSIKQKELSKQSSMSEN  593 (1062)
T ss_pred             cCCC-CCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhhcCCcEEEEeecccCCCCcccccchhhhhhhhc
Confidence            3332 5688999999999999999997 6779999998877766554444458888888 31               112


Q ss_pred             EEEEEeCCCeEEEEEcCC-------cee-EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecC
Q 001310          858 VIAIGMDDSTILIYNARS-------SEV-ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP  929 (1103)
Q Consensus       858 ~lasg~~dg~v~iwd~~~-------~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  929 (1103)
                      ..+..+  +..+++.+..       +.. ....+...-.+.+++|-  +..|+.|..+|.+.+||+....-...+-...+
T Consensus       594 ~vv~ds--~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAwk--~d~lv~GD~~GNl~~WDlg~R~SRg~~d~p~~  669 (1062)
T KOG1912|consen  594 LVVLDS--VESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAWK--DDILVVGDVEGNLVVWDLGRRQSRGVRDSPDP  669 (1062)
T ss_pred             eeeecc--ccchheehhhhhhhhccccchhhHHHHHHHHHHhhhcc--CCeeEeecccCceeEEecccccccCccCCCCc
Confidence            233333  2223333221       111 11111112233446664  66899999999999999876321110001111


Q ss_pred             CCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCC--CcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          930 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       930 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                      .      ....-..+-|....+++-...-+.+||.+....+..+ .+.  +..+..+.+......++  ..|.++|+-.+
T Consensus       670 r------a~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~si-ag~dssfrlldvdlc~~~~~~l--~~d~~~Rf~~m  740 (1062)
T KOG1912|consen  670 R------AHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSI-AGMDSSFRLLDVDLCEKSPLVL--PNDNKERFRVM  740 (1062)
T ss_pred             h------hhheecccCCCCceEEEEecCcceecccccceeeeee-ccCCcceEEEEEEecccCceec--CCCCceeEEec
Confidence            1      1233344455544555555666899999988888774 333  33444555554444443  34557777665


Q ss_pred             CCc
Q 001310         1008 SNL 1010 (1103)
Q Consensus      1008 ~~~ 1010 (1103)
                      ...
T Consensus       741 ~mk  743 (1062)
T KOG1912|consen  741 PMK  743 (1062)
T ss_pred             ccc
Confidence            543

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.80  E-value=7.7e-18  Score=164.04  Aligned_cols=407  Identities=11%  Similarity=0.128  Sum_probs=257.6

Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  480 (1103)
                      -+.|||+|+++|+++.- .+.|-|.++-+..+..    .--..|..+.|..|... .+.....|+.|.+|++...+--..
T Consensus        13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck   86 (447)
T KOG4497|consen   13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK   86 (447)
T ss_pred             ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence            36899999999999766 6888888875543322    22456889999998875 566678899999999999988888


Q ss_pred             eecCCCceEEEEeeecCCc-cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          481 FEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      +.....++.+++|+|  +| +.|.+...|-.|.+|.+.+.+.... ......+..++|+|||++.+.++.. |-...+.+
T Consensus        87 Ideg~agls~~~WSP--dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRr-DCkdyv~i  162 (447)
T KOG4497|consen   87 IDEGQAGLSSISWSP--DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRR-DCKDYVQI  162 (447)
T ss_pred             eccCCCcceeeeECC--CcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecc-cHHHHHHH
Confidence            888889999999965  55 5677778899999999987665442 3334456889999999999988652 22223333


Q ss_pred             EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001310          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1103)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~  639 (1103)
                      ..-+....++.+....   -..+.+.|+|||+.+++         ||---.-.+....  .+ -.+..++|+|.+++|++
T Consensus       163 ~~c~~W~ll~~f~~dT---~DltgieWsPdg~~laV---------wd~~Leykv~aYe--~~-lG~k~v~wsP~~qflav  227 (447)
T KOG4497|consen  163 SSCKAWILLKEFKLDT---IDLTGIEWSPDGNWLAV---------WDNVLEYKVYAYE--RG-LGLKFVEWSPCNQFLAV  227 (447)
T ss_pred             HhhHHHHHHHhcCCCc---ccccCceECCCCcEEEE---------ecchhhheeeeee--ec-cceeEEEeccccceEEe
Confidence            3333344455555544   56788999999988775         4322111111111  11 24788999999999999


Q ss_pred             EECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccC
Q 001310          640 IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1103)
Q Consensus       640 ~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  719 (1103)
                      |+.|+.+|+.+--+-+.+..+- |...+                                      .|.+..+-..+..+
T Consensus       228 GsyD~~lrvlnh~tWk~f~efl-hl~s~--------------------------------------~dp~~~~~~ke~~~  268 (447)
T KOG4497|consen  228 GSYDQMLRVLNHFTWKPFGEFL-HLCSY--------------------------------------HDPTLHLLEKETFS  268 (447)
T ss_pred             eccchhhhhhceeeeeehhhhc-cchhc--------------------------------------cCchhhhhhhhhcc
Confidence            9999999997655433332211 00000                                      00010000000000


Q ss_pred             CccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCee--ecCCCCCceeeccCC
Q 001310          720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL--YQPRHGPQFMVNDTT  797 (1103)
Q Consensus       720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~  797 (1103)
                      .            -.-...++.|.|..-         ...+|.......     ......+++  ..+.+       +. 
T Consensus       269 ~------------~ql~~~cLsf~p~~~---------~a~~~~~se~~Y-----E~~~~pv~~~~lkp~t-------D~-  314 (447)
T KOG4497|consen  269 I------------VQLLHHCLSFTPTDL---------EAHIWEESETIY-----EQQMTPVKVHKLKPPT-------DF-  314 (447)
T ss_pred             h------------hhhcccccccCCCcc---------ccCccccchhhh-----hhhhcceeeecccCCC-------CC-
Confidence            0            000112233333211         000111000000     000000000  00001       01 


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEcC---CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC
Q 001310          798 DSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR  874 (1103)
Q Consensus       798 ~~~~~~~v~~l~~s~d~~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~  874 (1103)
                       .+..-.+.-++|++|..++++-.|   +.+-+||+...+....+. ...+|.+..|.| +...|+.+.....+++|...
T Consensus       315 -pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~ps  391 (447)
T KOG4497|consen  315 -PNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPS  391 (447)
T ss_pred             -CCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCC
Confidence             123556778999999999999986   569999998766544443 567899999999 78888888888889999877


Q ss_pred             CceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCe
Q 001310          875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ  909 (1103)
Q Consensus       875 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~  909 (1103)
                      ....+.. .+..-.|..+.|.-+|..++-.+.|..
T Consensus       392 g~~~V~v-P~~GF~i~~l~W~~~g~~i~l~~kDaf  425 (447)
T KOG4497|consen  392 GPRVVGV-PKKGFNIQKLQWLQPGEFIVLCGKDAF  425 (447)
T ss_pred             CceEEec-CCCCceeeeEEecCCCcEEEEEcCCce
Confidence            5444443 333467999999999999999998874

>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]

Probab=99.80  E-value=1.7e-17  Score=166.97  Aligned_cols=298  Identities=12%  Similarity=0.139  Sum_probs=216.8

Q ss_pred             cccEEEEEEecCCc-EEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310          734 ANKISRLTYNNGGQ-AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1103)
Q Consensus       734 ~~~i~~~~~s~~g~-~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  812 (1103)
                      ..++.++.|.+++. .+++++.|..|++|.+........+               +.....-.+.  .|...|+++.|+|
T Consensus        13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~---------------~~V~y~s~Ls--~H~~aVN~vRf~p   75 (434)
T KOG1009|consen   13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD---------------MKVEYLSSLS--RHTRAVNVVRFSP   75 (434)
T ss_pred             CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc---------------eeEEEeeccc--CCcceeEEEEEcC
Confidence            46788899988877 8999999999999998765431111               0112222233  4999999999999


Q ss_pred             CCCEEEEEcC-CeEEEEEcC--------C--------ceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001310          813 NDAYLFSASG-GVISLYIVM--------T--------FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1103)
Q Consensus       813 d~~~l~~~~d-g~i~iwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1103)
                      +|..||+|+| |.|.+|-..        +        +...+.+.+|...|..++|+| ++.++++|+-|..+++||+..
T Consensus        76 ~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~  154 (434)
T KOG1009|consen   76 DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHA  154 (434)
T ss_pred             CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEecc
Confidence            9999999985 889999765        2        345566788999999999999 899999999999999999999


Q ss_pred             ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeee---eecCCCcccCC------------CCce
Q 001310          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQTPDGVMTLA------------PSET  940 (1103)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~~~~~~~~~~------------~~v~  940 (1103)
                      |.....+.+|...|..++|.|-++++++-+.|...+.+.+.........-   +....+.....            .-..
T Consensus       155 G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFr  234 (434)
T KOG1009|consen  155 GQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFR  234 (434)
T ss_pred             ceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhh
Confidence            99999999999999999999999999999999877777666533222111   11111110000            1235


Q ss_pred             EEEEcCCCCEEEEE-----eCC-----eEEEEECCCceEEEEeeCCCCcCeEEEEEcc------------------CCCE
Q 001310          941 HIQFHKDQTRFLLV-----HET-----HLAIYEAEELTCLKQWFPISSVPISQATFSC------------------DCRM  992 (1103)
Q Consensus       941 ~l~fs~dg~~l~~~-----~d~-----~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~------------------dg~~  992 (1103)
                      .++|+|||.+|++.     ..+     ..++|+-.........+++...++..+.|+|                  -+-.
T Consensus       235 RlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlv  314 (434)
T KOG1009|consen  235 RLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLV  314 (434)
T ss_pred             hcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceE
Confidence            68899999999972     223     3566665544443333444566666666665                  2223


Q ss_pred             EEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310          993 VFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus       993 l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      +|.++ ...|+|||.++...++......                  ..++.  +++|+++ |..|+..+.||...+-.+
T Consensus       315 faiAt-~~svyvydtq~~~P~~~v~nih------------------y~~iT--Diaws~d-g~~l~vSS~DGyCS~vtf  371 (434)
T KOG1009|consen  315 FAIAT-KNSVYVYDTQTLEPLAVVDNIH------------------YSAIT--DIAWSDD-GSVLLVSSTDGFCSLVTF  371 (434)
T ss_pred             EEEee-cceEEEeccccccceEEEeeee------------------eeeec--ceeecCC-CcEEEEeccCCceEEEEE
Confidence            45554 5679999999988887776443                  34454  7899988 899999999998776655

>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]

Probab=99.80  E-value=1.7e-17  Score=161.45  Aligned_cols=227  Identities=15%  Similarity=0.171  Sum_probs=170.7

Q ss_pred             cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCC---CCeeEEEEecCCCEEEEE
Q 001310          744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ---EAVPCFALSKNDAYLFSA  820 (1103)
Q Consensus       744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~l~~s~d~~~l~~~  820 (1103)
                      |+..++++.+.+.-|.+||.-.++.                      ......  ..|.   ....+++|+|||..|..|
T Consensus       121 P~t~l~a~ssr~~PIh~wdaftG~l----------------------raSy~~--ydh~de~taAhsL~Fs~DGeqlfaG  176 (406)
T KOG2919|consen  121 PSTNLFAVSSRDQPIHLWDAFTGKL----------------------RASYRA--YDHQDEYTAAHSLQFSPDGEQLFAG  176 (406)
T ss_pred             CccceeeeccccCceeeeecccccc----------------------ccchhh--hhhHHhhhhheeEEecCCCCeEeec
Confidence            6677788888887777777554432                      111110  1122   234579999999999999


Q ss_pred             cCCeEEEEEcC-CceeeE---Ee----cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEE
Q 001310          821 SGGVISLYIVM-TFKTIL---TI----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL  892 (1103)
Q Consensus       821 ~dg~i~iwd~~-~~~~~~---~~----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l  892 (1103)
                      ....|++||+. .|..-.   ++    .+..+-+.+++|+|.+.+.+|.|+....+-||.-..+.++..+-+|.+.|+.+
T Consensus       177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL  256 (406)
T KOG2919|consen  177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL  256 (406)
T ss_pred             ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence            99999999994 443211   11    12356789999999888899999999999999999999999999999999999


Q ss_pred             EEccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC-ceE
Q 001310          893 VFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-LTC  969 (1103)
Q Consensus       893 ~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~-~~~  969 (1103)
                      .|.+||+.|.+|+. |..|..||+....    ..+-.+.+|....+.-.-....|+|++|++| .||.|++||+++ |..
T Consensus       257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~----~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~  332 (406)
T KOG2919|consen  257 QWCEDGNKLFSGARKDDKILCWDIRYSR----DPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE  332 (406)
T ss_pred             EeccCcCeecccccCCCeEEEEeehhcc----chhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence            99999999999885 7789999998633    2333334443322223345567999999997 899999999998 665


Q ss_pred             EEEeeCCCCcCeEEEEEccCCCEEEEEecC
Q 001310          970 LKQWFPISSVPISQATFSCDCRMVFTSFVD  999 (1103)
Q Consensus       970 ~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d  999 (1103)
                      +.. ...|+..+..+++.|-=.++||++..
T Consensus       333 ~sv-~~~~sd~vNgvslnP~mpilatssGq  361 (406)
T KOG2919|consen  333 VSV-TGNYSDTVNGVSLNPIMPILATSSGQ  361 (406)
T ss_pred             ccc-cccccccccceecCcccceeeeccCc
Confidence            555 56689999999999997778887654

>KOG1912 consensus WD40 repeat protein [General function prediction only]

Probab=99.80  E-value=1.9e-16  Score=171.19  Aligned_cols=494  Identities=13%  Similarity=0.097  Sum_probs=294.3

Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC----------CCceEEEEEcCCC
Q 001310          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP----------CKQISVITCGDDK  465 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d----------~~~~~l~s~~~d~  465 (1103)
                      ...-.++.|+|.| +||.|+.. .|.+-|..+-+.++   .+.-|...|+.+.|.|-          ..+++++++...|
T Consensus        15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G   89 (1062)
T KOG1912|consen   15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG   89 (1062)
T ss_pred             cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence            3446788999876 67777654 58888887765555   67889999999999773          2346789999999


Q ss_pred             ceEEEeCCCCceeEEeecCCCceEEEEeeecCCc--cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCC
Q 001310          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGR  542 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~  542 (1103)
                      .|.+||...+..+..+..|..++..++|.+..+.  .+|++.....++.+|+.++++.............|+.+.| |.+
T Consensus        90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r  169 (1062)
T KOG1912|consen   90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR  169 (1062)
T ss_pred             cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence            9999999999999999999999999999876554  4778888889999999999999888877777777888888 445


Q ss_pred             EEEEEecCCCCceeEEEEeCC-------CCeeEEEEecccc-------------c---CCc------eEEEEEcCCCCEE
Q 001310          543 RLFSCGTSKEGESFLVEWNES-------EGAIKRTYQGLQL-------------Q---HNS------VSVVHFDTAKDQI  593 (1103)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-------------~---~~~------v~~~~~~~~~~~l  593 (1103)
                      .+...+.    .|.+.+-+.-       .|+..+.-..|..             +   ...      ...++|+|.-+.+
T Consensus       170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~  245 (1062)
T KOG1912|consen  170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI  245 (1062)
T ss_pred             eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence            5444432    3334443321       1222222222110             0   000      1224678877767


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC--CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeE
Q 001310          594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG--TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1103)
Q Consensus       594 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~  671 (1103)
                      +.......+.++|++-..++.......+.  +..+.+-|++  ..|++...||.+.+|-...........     ...+.
T Consensus       246 lfi~~prellv~dle~~~~l~vvpier~~--akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~-----~~~l~  318 (1062)
T KOG1912|consen  246 LFITFPRELLVFDLEYECCLAVVPIERGG--AKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKP-----NASLS  318 (1062)
T ss_pred             EEEEeccceEEEcchhhceeEEEEeccCC--cceeEeccCCCcceEEEEecCCeEEEEEeeccCcccccc-----chhhc
Confidence            77777888999999999999888877554  4556666654  579999999999999766421111110     00000


Q ss_pred             EecCCceeeeeccCCceEecCCCCCC-CccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecC-----
Q 001310          672 VNPISTVTGAGIANGSVSVNEDPKED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNG-----  745 (1103)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-----  745 (1103)
                      ..-....-++........+.+...|. ...++.--.+|.+.+|++..+.........     ...-+..+.|...     
T Consensus       319 ~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~-----~iel~~pf~f~~~~~~v~  393 (1062)
T KOG1912|consen  319 MDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSS-----SIELVLPFDFNLSTKLVG  393 (1062)
T ss_pred             cccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccc-----cccccccccccCceeehh
Confidence            00000000000000000000111122 333444456678888887743322111110     0001111111111     


Q ss_pred             CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCe
Q 001310          746 GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGV  824 (1103)
Q Consensus       746 g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~  824 (1103)
                      ...+..-+.||.           .+.|.     +..-.++..........     ..+......    -.++|.|. .|+
T Consensus       394 k~~l~~LS~dg~-----------h~sGs-----~~~~~~p~p~~t~~~~~-----p~~n~~~~~----~pLvAvGT~sGT  448 (1062)
T KOG1912|consen  394 KTSLISLSDDGS-----------HSSGS-----TCVRMRPMPELTKVEND-----PGGNTPAGT----VPLVAVGTNSGT  448 (1062)
T ss_pred             hccccchhhcCC-----------CCCCc-----eeeecccCcccceeecC-----CCCCcccee----eeeEEeecCCce
Confidence            111222222220           00000     00000110000000000     000000000    13566665 699


Q ss_pred             EEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe----------CCCeEEEEEcCCceeE--EEecc-CCCCEEE
Q 001310          825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEVI--SKLEG-HSKRVTG  891 (1103)
Q Consensus       825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~----------~dg~v~iwd~~~~~~~--~~l~~-h~~~V~~  891 (1103)
                      |.++|+.++..-+.+..|...|.++.|-. .. .|++.+          .-+.+.+-|+.+|...  +.+.+ ...+|+.
T Consensus       449 V~vvdvst~~v~~~fsvht~~VkgleW~g-~s-slvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~  526 (1062)
T KOG1912|consen  449 VDVVDVSTNAVAASFSVHTSLVKGLEWLG-NS-SLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRA  526 (1062)
T ss_pred             EEEEEecchhhhhhhcccccceeeeeecc-ce-eEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCccee
Confidence            99999999999999999999999999975 33 444332          2247788899998532  22232 5678999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001310          892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  945 (1103)
Q Consensus       892 l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs  945 (1103)
                      +..|.-|+||+..-.|.-+.+||+++..     +++......+   -++.+.|+
T Consensus       527 irvS~~~~yLai~Fr~~plEiwd~kt~~-----~lr~mS~a~P---~it~leWs  572 (1062)
T KOG1912|consen  527 IRVSSSGRYLAILFRREPLEIWDLKTLR-----MLRLMSLALP---LITVLEWS  572 (1062)
T ss_pred             eeecccCceEEEEecccchHHHhhccch-----HHHHHhhcCC---cEEEEeec
Confidence            9999999999999999999999998733     2222222111   37888888

>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]

Probab=99.80  E-value=1.8e-17  Score=161.88  Aligned_cols=301  Identities=16%  Similarity=0.254  Sum_probs=211.4

Q ss_pred             eccCCCccEEEEEECC-----CCCEEEEEeCCCeEEEEEecCCCccccceEe--ccccccEEEEEEecCCC--ceEEEEE
Q 001310          391 LVRDPGVSVNRVVWSP-----DGSLLGVAYSKHIVQLYAYHGGSDARQQLEI--DAHVGNVNDLAFSAPCK--QISVITC  461 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~sp-----dg~~las~~~d~~i~iwd~~~~~~~~~~~~l--~~h~~~v~~~~~s~d~~--~~~l~s~  461 (1103)
                      +..+|+.+|..++|.+     +-..+|+++ ...+.+|.......++.....  ..|......++|+-|..  ..++|.+
T Consensus        33 l~ed~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~  111 (385)
T KOG1034|consen   33 LKEDHNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAG  111 (385)
T ss_pred             hhccCCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEee
Confidence            3667899999999985     234455554 445899988765422322222  24777788889976543  3488999


Q ss_pred             cCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC
Q 001310          462 GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG  541 (1103)
Q Consensus       462 ~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg  541 (1103)
                      +.-|.|+|.|+.++++...+.+|...|+.+.++|. +.++++++|.|..||+|++++                       
T Consensus       112 G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~-~~qlvls~SkD~svRlwnI~~-----------------------  167 (385)
T KOG1034|consen  112 GYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPD-RPQLVLSASKDHSVRLWNIQT-----------------------  167 (385)
T ss_pred             cceeEEEEEecchhhhccceeccCccchhhhcCCC-CCcEEEEecCCceEEEEeccC-----------------------
Confidence            99999999999999999999999999999999876 335777888777776666554                       


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc----
Q 001310          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----  617 (1103)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----  617 (1103)
                                             ..++..+.|...|.+.|.++.|++++.++++++.|.++++|++...+....+.    
T Consensus       168 -----------------------~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~  224 (385)
T KOG1034|consen  168 -----------------------DVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSIT  224 (385)
T ss_pred             -----------------------CeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcc
Confidence                                   33344444444455999999999999999999999999999998432211110    


Q ss_pred             --CC--------------------CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC-CCCeeEec-------------c
Q 001310          618 --AG--------------------GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAA-------------G  661 (1103)
Q Consensus       618 --~~--------------------~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~-~~~~~~~~-------------~  661 (1103)
                        ..                    -+...|-|+.|-  |+++++-+-++.|..|... -.+.+...             .
T Consensus       225 ~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~  302 (385)
T KOG1034|consen  225 YSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD  302 (385)
T ss_pred             cCCCCccCcCCccccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec
Confidence              00                    011223344443  6788888889999999873 22221111             1


Q ss_pred             ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEE
Q 001310          662 VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLT  741 (1103)
Q Consensus       662 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~  741 (1103)
                      .....++-+.|+                |    .+-++.|+.|...|.+.+||+...++..+..+.-+.  ....|+..+
T Consensus       303 ~~~c~iWfirf~----------------~----d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~--~~~tVRQ~s  360 (385)
T KOG1034|consen  303 YPMCDIWFIRFA----------------F----DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSK--SGSTVRQTS  360 (385)
T ss_pred             cCccceEEEEEe----------------e----cHHHHHHhhccCCCcEEEEECCCCCCccCceEEecc--ccceeeeee
Confidence            112222222221                1    367889999999999999999988776555554333  567899999


Q ss_pred             EecCCcEEEEeecCceEEEeec
Q 001310          742 YNNGGQAIFALASNGVHLMWRW  763 (1103)
Q Consensus       742 ~s~~g~~l~~~~~dg~i~vw~~  763 (1103)
                      |+.||..|+....|++|.-||.
T Consensus       361 fS~dgs~lv~vcdd~~Vwrwdr  382 (385)
T KOG1034|consen  361 FSRDGSILVLVCDDGTVWRWDR  382 (385)
T ss_pred             ecccCcEEEEEeCCCcEEEEEe
Confidence            9999999999999999888874

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.79  E-value=3e-19  Score=194.08  Aligned_cols=285  Identities=19%  Similarity=0.286  Sum_probs=220.6

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      ++.|.||...|.|+.|...|. ++++|+.|..|+||..+++.++.+                   ..||++.|+.++.+.
T Consensus       183 ikrLlgH~naVyca~fDrtg~-~Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~  242 (1113)
T KOG0644|consen  183 IKRLLGHRNAVYCAIFDRTGR-YIITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS  242 (1113)
T ss_pred             HHHHHhhhhheeeeeeccccc-eEeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence            456789999999999999998 689999999999999999999876                   889999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE---eec
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS---FEG  483 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~---~~~  483 (1103)
                      +..++|+++.|..|++|.+.++..+.   .+.||++.|++++|+|-      .+.+.||++++||..=.-.++.   ++.
T Consensus       243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~  313 (1113)
T KOG0644|consen  243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF  313 (1113)
T ss_pred             hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence            99999999999999999999997665   68899999999999983      4788899999999761111111   111


Q ss_pred             -CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC-EEEEEecCCCCceeEEEEe
Q 001310          484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       484 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd  561 (1103)
                       ...-+.++.|  ..++..+++++.|+.-..|.+.-..      .+...+.-+.++.|-. +.+++-    .+..+.+|+
T Consensus       314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~------~~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn  381 (1113)
T KOG0644|consen  314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLA------WRSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN  381 (1113)
T ss_pred             ccccceeeeec--cccccccccccCCcccccchhhHhh------hhccceEEEeccccccccceeee----eeeEeeeee
Confidence             1233444444  4466788999999988888554211      1111122222222322 222222    266788999


Q ss_pred             CCCCeeEEEEecccccCCceEEEEEcCCCCEEE-EEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1103)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~  640 (1103)
                      +.+|...+.+.+|.   ..+..+.++|-+..++ +++.||...|||+-.|.+++..... + ..+....||+||..++..
T Consensus       382 l~~g~l~H~l~ghs---d~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g-h-~kl~d~kFSqdgts~~ls  456 (1113)
T KOG0644|consen  382 LYTGQLLHNLMGHS---DEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG-H-GKLVDGKFSQDGTSIALS  456 (1113)
T ss_pred             cccchhhhhhcccc---cceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc-c-ceeeccccCCCCceEecC
Confidence            99999999999988   8999999999877665 5899999999999999888776633 2 346788999999999999


Q ss_pred             ECCCeEEEEEcCCCCee
Q 001310          641 ANENRIKILETPESNSV  657 (1103)
Q Consensus       641 ~~dg~i~iw~~~~~~~~  657 (1103)
                      .+-|.+.|.....++..
T Consensus       457 d~hgql~i~g~gqs~s~  473 (1113)
T KOG0644|consen  457 DDHGQLYILGTGQSKSQ  473 (1113)
T ss_pred             CCCCceEEeccCCCccc
Confidence            99999999887765443

>KOG0270 consensus WD40 repeat-containing protein [Function unknown]

Probab=99.78  E-value=7.2e-18  Score=171.51  Aligned_cols=254  Identities=13%  Similarity=0.179  Sum_probs=186.6

Q ss_pred             CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeecccccc------ceeeeeccCCCccEEEEEECCC-CCEEEEEeCCC
Q 001310          346 QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSM------LFKTALVRDPGVSVNRVVWSPD-GSLLGVAYSKH  418 (1103)
Q Consensus       346 g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~h~~~V~~~~~spd-g~~las~~~d~  418 (1103)
                      |+ ++|.|+.|..|.|||+.--..+.    +..-++.-..      ..+.....+|+..|-+++|... ...||+||.|.
T Consensus       192 gN-yvAiGtmdp~IeIWDLDI~d~v~----P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~  266 (463)
T KOG0270|consen  192 GN-YVAIGTMDPEIEIWDLDIVDAVL----PCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADK  266 (463)
T ss_pred             cc-eEEEeccCceeEEeccccccccc----cceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCc
Confidence            55 79999999999999985322211    0111110000      0122235689999999999985 56789999999


Q ss_pred             eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCC
Q 001310          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKEN  498 (1103)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~  498 (1103)
                      +|++||+.+|++..   ++..|.+.|.+++|.|.... +|++|+.|++|.+.|.+........-...+.|..++|.+...
T Consensus       267 TV~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se  342 (463)
T KOG0270|consen  267 TVKLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE  342 (463)
T ss_pred             eEEEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc
Confidence            99999999998766   67789999999999998776 899999999999999885433322223567788999987643


Q ss_pred             ccEEEEEECCCeEEEEEcCCC-CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccccc
Q 001310          499 IHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ  577 (1103)
Q Consensus       499 ~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~  577 (1103)
                       ..++++..||+|+-+|++.. ++..++..|..+|.++++++....+++.+   ..++.+.+|++..-... ....|...
T Consensus       343 -~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~---s~d~~Vklw~~~~~~~~-~v~~~~~~  417 (463)
T KOG0270|consen  343 -NSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTA---STDKVVKLWKFDVDSPK-SVKEHSFK  417 (463)
T ss_pred             -eeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeec---cccceEEEEeecCCCCc-cccccccc
Confidence             57888899999999999987 67889999999999999999776655543   23778999998654331 11222212


Q ss_pred             CCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeE
Q 001310          578 HNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLL  613 (1103)
Q Consensus       578 ~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~  613 (1103)
                      -+...|.++.|+-..+ +.|+..+.++|||+.+...+
T Consensus       418 ~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V  454 (463)
T KOG0270|consen  418 LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV  454 (463)
T ss_pred             ccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence            2457788888886655 45778888999999876544

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.78  E-value=4.4e-17  Score=162.93  Aligned_cols=237  Identities=16%  Similarity=0.261  Sum_probs=184.9

Q ss_pred             eccCCCccEEEEEECC-CCCEEEEEeCCCeEEEEEecCCCc----cccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310          391 LVRDPGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~  465 (1103)
                      ...||+++|-.++|+| +...||+||.|.+|.||.+-.+..    ......|.||...|.-++|+|.-.+ +|++++.|.
T Consensus        76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn  154 (472)
T KOG0303|consen   76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN  154 (472)
T ss_pred             CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence            4789999999999999 778899999999999999876543    2345578999999999999998877 899999999


Q ss_pred             ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc-cEEEEEEccCCCEE
Q 001310          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL-GCTRMAYSANGRRL  544 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l  544 (1103)
                      +|.+||+.+|+.+.++. |.+.|++++|+  .||.++++.+.|..|||||.++++....-..|.+ .-..+.|-.+|. +
T Consensus       155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn--~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i  230 (472)
T KOG0303|consen  155 TVSIWNVGTGEALITLD-HPDMVYSMSFN--RDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I  230 (472)
T ss_pred             eEEEEeccCCceeeecC-CCCeEEEEEec--cCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence            99999999999999988 99999999995  4788999999999999999999988877766554 456677888998 6


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCee-EEEEcCCCCC
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGL  622 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~  622 (1103)
                      ++.+.++-.+.++-+||...-+.-..+.... ..+.|.--.+.++...++. |-.|+.||-|.+....+ +.-+......
T Consensus       231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elD-tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~  309 (472)
T KOG0303|consen  231 FTTGFSRMSERQIALWDPNNLEEPIALQELD-TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSK  309 (472)
T ss_pred             eeeccccccccceeccCcccccCcceeEEec-cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEecccccC
Confidence            6666777778899999977543322222211 1345666678888887766 55899999999987653 2333222223


Q ss_pred             CCCceEEEecC
Q 001310          623 PENPRICFNKN  633 (1103)
Q Consensus       623 ~~v~~v~~s~~  633 (1103)
                      .+-..+.|-|.
T Consensus       310 epQRG~g~mPK  320 (472)
T KOG0303|consen  310 EPQRGMGFMPK  320 (472)
T ss_pred             Ccccccccccc
Confidence            34466777664

>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]

Probab=99.77  E-value=1.4e-17  Score=166.50  Aligned_cols=237  Identities=15%  Similarity=0.181  Sum_probs=177.9

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC-C
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-G  408 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g  408 (1103)
                      ..||+++|..++|+|-....+|+||.|.+|.||++..+.......-            ....|.||...|.-++|+|. .
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte------------pvv~L~gH~rrVg~V~wHPtA~  144 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE------------PVVELYGHQRRVGLVQWHPTAP  144 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc------------ceEEEeecceeEEEEeecccch
Confidence            4699999999999998877899999999999999987665543221            12238899999999999995 5


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  488 (1103)
                      +.|++++.|.+|.+||+.+|+.+.   ++. |...|.++.|+.||.  ++++.+.|+.|||||..+++.+..-.+|.+.-
T Consensus       145 NVLlsag~Dn~v~iWnv~tgeali---~l~-hpd~i~S~sfn~dGs--~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k  218 (472)
T KOG0303|consen  145 NVLLSAGSDNTVSIWNVGTGEALI---TLD-HPDMVYSMSFNRDGS--LLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAK  218 (472)
T ss_pred             hhHhhccCCceEEEEeccCCceee---ecC-CCCeEEEEEeccCCc--eeeeecccceeEEEcCCCCcEeeecccccCCC
Confidence            678899999999999999998655   454 999999999999999  89999999999999999999998887887543


Q ss_pred             E-EEEeeecCCccEEEEEE---CCCeEEEEEcCCCCeeEEec--CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          489 Y-SLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       489 ~-~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      . .+.|  -.++.++.+|.   .+..+-+||..+.+....+.  .....|.---+.+|.+.++.++   .||+.|+.|.+
T Consensus       219 ~~Raif--l~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~G---KGD~~IRYyEi  293 (472)
T KOG0303|consen  219 PARAIF--LASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCG---KGDSSIRYFEI  293 (472)
T ss_pred             cceeEE--eccCceeeeccccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEe---cCCcceEEEEe
Confidence            2 2223  33555444442   46779999987765543222  2334666677899999999887   46888999998


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1103)
                      ........+-..-....+-..+.|-|.
T Consensus       294 t~d~P~~hyln~f~S~epQRG~g~mPK  320 (472)
T KOG0303|consen  294 TNEPPFVHYLNTFSSKEPQRGMGFMPK  320 (472)
T ss_pred             cCCCceeEEecccccCCcccccccccc
Confidence            766532222211111235556666664

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.77  E-value=1.6e-16  Score=164.79  Aligned_cols=229  Identities=16%  Similarity=0.151  Sum_probs=164.9

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEE-E-----ecCCCceEEEEEcCCCce
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA-F-----SAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~-~-----s~d~~~~~l~s~~~d~~i  467 (1103)
                      .|...|.|+.|+.+...+.+++.+..+.-||+.+.+ .... .+.  ..-|.... .     ...+..-.++.++.||.+
T Consensus        12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~-~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf   87 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA-KLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF   87 (737)
T ss_pred             ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh-hCC--cccCCccccccccccCCCCCcceEEEEcCCceE
Confidence            367778899999888777776555544555554432 2111 111  11111100 0     111111268888999999


Q ss_pred             EEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      .|-+ ..++....+..|.+.+.+-.|++  +|.-|+++++||.|++|.- ++-.+.++.....+|.|++|.|+.+.++.|
T Consensus        88 ~il~-k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWSr-sGMLRStl~Q~~~~v~c~~W~p~S~~vl~c  163 (737)
T KOG1524|consen   88 VILN-KSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWSR-SGMLRSTVVQNEESIRCARWAPNSNSIVFC  163 (737)
T ss_pred             EEec-ccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEec-cchHHHHHhhcCceeEEEEECCCCCceEEe
Confidence            9998 88888889999999999998854  7788999999999999973 333344455566789999999999888887


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      ..     +.+.+=.+.....+-..+.|.   +-|.++.|++..+.+++|++|-..+|||.. |..+..-..|  ..+|++
T Consensus       164 ~g-----~h~~IKpL~~n~k~i~WkAHD---GiiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~--ey~ITS  232 (737)
T KOG1524|consen  164 QG-----GHISIKPLAANSKIIRWRAHD---GLVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAE--EYAITS  232 (737)
T ss_pred             cC-----CeEEEeecccccceeEEeccC---cEEEEeecCccccceeecCCceeEEeeccc-CcccccCChh--ccceee
Confidence            53     347777777777777788887   999999999999999999999999999975 4444444444  457999


Q ss_pred             EEEecCCCEEEEEEC
Q 001310          628 ICFNKNGTLLAVIAN  642 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~  642 (1103)
                      ++|+|+ +.+++++.
T Consensus       233 va~npd-~~~~v~S~  246 (737)
T KOG1524|consen  233 VAFNPE-KDYLLWSY  246 (737)
T ss_pred             eeeccc-cceeeeee
Confidence            999999 66676665

>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]

Probab=99.76  E-value=1.4e-16  Score=155.30  Aligned_cols=337  Identities=12%  Similarity=0.167  Sum_probs=226.2

Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCeeE
Q 001310          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQLL  613 (1103)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~  613 (1103)
                      .+|||+|+++++++.     -++.|-|..+-+..+.+...    +.|..+.|..|.-++++ ...++.|.+|++...+-.
T Consensus        14 c~fSp~g~yiAs~~~-----yrlviRd~~tlq~~qlf~cl----dki~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew~   84 (447)
T KOG4497|consen   14 CSFSPCGNYIASLSR-----YRLVIRDSETLQLHQLFLCL----DKIVYIEWKADSCHILCVAYKDPKVQVWSLVQPEWY   84 (447)
T ss_pred             eeECCCCCeeeeeee-----eEEEEeccchhhHHHHHHHH----HHhhheeeeccceeeeeeeeccceEEEEEeecceeE
Confidence            589999999999974     35888888877766666553    36778889999888887 567889999999988877


Q ss_pred             EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecC
Q 001310          614 TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1103)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1103)
                      ..+...  ..++..++|||||+.+...+ -+-.|.+|.+.+.+....-.                               
T Consensus        85 ckIdeg--~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~-------------------------------  131 (447)
T KOG4497|consen   85 CKIDEG--QAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPH-------------------------------  131 (447)
T ss_pred             EEeccC--CCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecc-------------------------------
Confidence            777643  45689999999997665554 47889999988763321110                               


Q ss_pred             CCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccc
Q 001310          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1103)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~  772 (1103)
                                                              ....+..++|.|||++.+..+.....-.+.+.        
T Consensus       132 ----------------------------------------pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~--------  163 (447)
T KOG4497|consen  132 ----------------------------------------PKTNVKGYAFHPDGQFCAILSRRDCKDYVQIS--------  163 (447)
T ss_pred             ----------------------------------------cccCceeEEECCCCceeeeeecccHHHHHHHH--------
Confidence                                                    11234667888888876665543111111000        


Q ss_pred             ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEE
Q 001310          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSL  849 (1103)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l  849 (1103)
                            ..+-|.+-     ..+++    ..-..+.+.++|||..||+-.   +-.|..|..            .-.+..+
T Consensus       164 ------~c~~W~ll-----~~f~~----dT~DltgieWsPdg~~laVwd~~Leykv~aYe~------------~lG~k~v  216 (447)
T KOG4497|consen  164 ------SCKAWILL-----KEFKL----DTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYER------------GLGLKFV  216 (447)
T ss_pred             ------hhHHHHHH-----HhcCC----CcccccCceECCCCcEEEEecchhhheeeeeee------------ccceeEE
Confidence                  01112111     11111    334556788888888887654   233333322            2356778


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCcee---------------------------------------------------
Q 001310          850 AFNPHDNNVIAIGMDDSTILIYNARSSEV---------------------------------------------------  878 (1103)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~---------------------------------------------------  878 (1103)
                      +|+| .+++|++|+.|+.++|.+--+.+.                                                   
T Consensus       217 ~wsP-~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~  295 (447)
T KOG4497|consen  217 EWSP-CNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI  295 (447)
T ss_pred             Eecc-ccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence            8888 888888888888888755433221                                                   


Q ss_pred             ---------EEEec------cCCCCEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceE
Q 001310          879 ---------ISKLE------GHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH  941 (1103)
Q Consensus       879 ---------~~~l~------~h~~~V~~l~~s~dg~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1103)
                               +..++      ...-.+.-++||+|..+++|-..  -..+-+||+..-+     ....+....    +|..
T Consensus       296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~-----l~avLiQk~----pira  366 (447)
T KOG4497|consen  296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLK-----LHAVLIQKH----PIRA  366 (447)
T ss_pred             hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhh-----hhhhhhhcc----ceeE
Confidence                     11111      01124667999999999998643  3569999998744     222222222    6999


Q ss_pred             EEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310          942 IQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus       942 l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
                      ..|.|.-..|++. ...++++|......++..  +..+-.|..+.|.-+|..++-.+.|-
T Consensus       367 f~WdP~~prL~vctg~srLY~W~psg~~~V~v--P~~GF~i~~l~W~~~g~~i~l~~kDa  424 (447)
T KOG4497|consen  367 FEWDPGRPRLVVCTGKSRLYFWAPSGPRVVGV--PKKGFNIQKLQWLQPGEFIVLCGKDA  424 (447)
T ss_pred             EEeCCCCceEEEEcCCceEEEEcCCCceEEec--CCCCceeeeEEecCCCcEEEEEcCCc
Confidence            9999999888885 666899999887666664  33457899999999999999998885

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=3.7e-17  Score=162.52  Aligned_cols=303  Identities=12%  Similarity=0.104  Sum_probs=215.1

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      +.+.+.+|.+-|.++.||.+++ +||+|+.|..+++|+++.-...++           .+++.. .-..|...|.|++|.
T Consensus        48 ~qKD~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~-----------~KPI~~-~~~~H~SNIF~L~F~  114 (609)
T KOG4227|consen   48 CQKDVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKT-----------PKPIGV-MEHPHRSNIFSLEFD  114 (609)
T ss_pred             hhhhhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcC-----------CCCcee-ccCccccceEEEEEc
Confidence            4456789999999999999998 799999999999999864322221           011111 133467899999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-e--eEEee
Q 001310          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-R--TYSFE  482 (1103)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~--~~~~~  482 (1103)
                      ...++|.+|..+++|..-|+++.+.+... .-....+.|..+..+|-..  .+++.+.++.|.+||..... .  +..+.
T Consensus       115 ~~N~~~~SG~~~~~VI~HDiEt~qsi~V~-~~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~A  191 (609)
T KOG4227|consen  115 LENRFLYSGERWGTVIKHDIETKQSIYVA-NENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPA  191 (609)
T ss_pred             cCCeeEecCCCcceeEeeecccceeeeee-cccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeec
Confidence            99999999999999999999997655421 1112334899999999877  89999999999999987654 2  22333


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE-------ecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-------YDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1103)
                      .......++.|+|.. ..+|++.+..+-+-+||.+.......       +......-.++.|+|.|+.+.+.-..    .
T Consensus       192 N~~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~----~  266 (609)
T KOG4227|consen  192 NSGKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRG----K  266 (609)
T ss_pred             CCCccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhcc----C
Confidence            344566777887753 36888999999999999876543221       11112234678899999999876532    2


Q ss_pred             eEEEEeCCCCeeEEEEecccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------------------
Q 001310          556 FLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---------------------  610 (1103)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------------------  610 (1103)
                      .-.+||+.+.++...-..|..    ....+.+++|..+- .+++|+.+-.|++|.+...                     
T Consensus       267 ~P~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~  345 (609)
T KOG4227|consen  267 CPLYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIF  345 (609)
T ss_pred             CCEEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhhe
Confidence            245677776443222222221    12357778887664 4899999999999987531                     


Q ss_pred             --eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          611 --QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       611 --~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                        ..+..+.+|  ...++.|.|+|...+|++.+-.+.++||.-.
T Consensus       346 i~~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  346 IEKELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             ecceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence              122344444  3457899999999999999999999999754

>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.76  E-value=3.9e-18  Score=193.89  Aligned_cols=250  Identities=14%  Similarity=0.150  Sum_probs=196.4

Q ss_pred             CceEEEecCCCce---EEEEEcCCCcEEEEECCCC---CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310          336 SPMSMDFHPVQHT---LLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1103)
Q Consensus       336 ~V~~v~~spdg~~---llasgs~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~  409 (1103)
                      .-..++|++.|..   ++|.|..||.|.+||...-   ....                .......|++.|..+.|++.+.
T Consensus        66 rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~----------------~la~~~~h~G~V~gLDfN~~q~  129 (1049)
T KOG0307|consen   66 RFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEE----------------VLATKSKHTGPVLGLDFNPFQG  129 (1049)
T ss_pred             cceeeeecccCCCccceeeccccCCceEEecchhhccCcchH----------------HHhhhcccCCceeeeeccccCC
Confidence            6678899888775   6899999999999998652   1111                0111567999999999999655


Q ss_pred             -EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC--
Q 001310          410 -LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA--  486 (1103)
Q Consensus       410 -~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--  486 (1103)
                       +||+|++||.|.|||+..-+.-.... -..-.+.|.+++|+..-.. +|++++.+|.+.|||++..+.+-.+..+.+  
T Consensus       130 nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~  207 (1049)
T KOG0307|consen  130 NLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTPGRM  207 (1049)
T ss_pred             ceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCCCcc
Confidence             99999999999999998754222110 1124568999999987666 899999999999999999988887776655  


Q ss_pred             ceEEEEeeecCCccEEEEEECC-C--eEEEEEcCCCCe-eEEecCCCccEEEEEEccCC-CEEEEEecCCCCceeEEEEe
Q 001310          487 PVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd  561 (1103)
                      .+..++|||+... .+++++.| +  .|.+||++.... ..++..|...|.++.|++.+ .+|++++.    |+.|.+|+
T Consensus       208 ~~S~l~WhP~~aT-ql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~wN  282 (1049)
T KOG0307|consen  208 HCSVLAWHPDHAT-QLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIICWN  282 (1049)
T ss_pred             ceeeeeeCCCCce-eeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeEec
Confidence            4678899987554 45555544 3  499999987554 45678999999999999976 77777765    66799999


Q ss_pred             CCCCeeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCCe
Q 001310          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~  611 (1103)
                      .++++.+..+....   +.+..+.|+|... .+++++-||.|.|+.+....
T Consensus       283 ~~tgEvl~~~p~~~---nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~  330 (1049)
T KOG0307|consen  283 PNTGEVLGELPAQG---NWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD  330 (1049)
T ss_pred             CCCceEeeecCCCC---cceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence            99999999998755   8999999999887 66678999999999987654

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.76  E-value=1e-15  Score=143.06  Aligned_cols=286  Identities=12%  Similarity=0.139  Sum_probs=195.9

Q ss_pred             cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1103)
Q Consensus       736 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  815 (1103)
                      .|.+-+++|.+++++++..+|.|.+..+..-..   +.+..         .....+.    +..+|..++..++|.  ..
T Consensus        12 tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s---~sa~~---------~gk~~iv----~eqahdgpiy~~~f~--d~   73 (325)
T KOG0649|consen   12 TVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDS---GSAEP---------PGKLKIV----PEQAHDGPIYYLAFH--DD   73 (325)
T ss_pred             HHHHHhhCCcceEEEEecCCCeEEEEEehhhhc---cccCC---------CCCccee----eccccCCCeeeeeee--hh
Confidence            455667899999999999999999998765321   11110         0111111    123699999999998  56


Q ss_pred             EEEEEcCCeEEEEEcCCcee------eEEec-------CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310          816 YLFSASGGVISLYIVMTFKT------ILTIM-------PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1103)
Q Consensus       816 ~l~~~~dg~i~iwd~~~~~~------~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1103)
                      +|++++||.|+-|.......      +.+..       ..-..|+++-..|..+.+ +.++.|+.++-||+++|+...++
T Consensus        74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi-~~AgGD~~~y~~dlE~G~i~r~~  152 (325)
T KOG0649|consen   74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSI-LFAGGDGVIYQVDLEDGRIQREY  152 (325)
T ss_pred             heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcE-EEecCCeEEEEEEecCCEEEEEE
Confidence            88899999999998764322      11111       123478999999955544 44558999999999999999999


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc----CCCCceEEEEcCCCCEEEEEeCCe
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLVHETH  958 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~fs~dg~~l~~~~d~~  958 (1103)
                      +||++.|.+++--.....+.||++||++++||.++++....  +...+....    ...+|  .+..-+..+|++|....
T Consensus       153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~--ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~  228 (325)
T KOG0649|consen  153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM--IEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPK  228 (325)
T ss_pred             cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE--eccccChhhcCcccCcee--EEEeccCceEEecCCCc
Confidence            99999999999855556788999999999999999775442  222111110    11233  44555677999998889


Q ss_pred             EEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeecc
Q 001310          959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCS 1038 (1103)
Q Consensus       959 v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1038 (1103)
                      +.+|.+++.++...+.-  ..++..+.|-.|  .+++++..+.|.-|.+. |.+...+...                   
T Consensus       229 lslwhLrsse~t~vfpi--pa~v~~v~F~~d--~vl~~G~g~~v~~~~l~-Gvl~a~ip~~-------------------  284 (325)
T KOG0649|consen  229 LSLWHLRSSESTCVFPI--PARVHLVDFVDD--CVLIGGEGNHVQSYTLN-GVLQANIPVE-------------------  284 (325)
T ss_pred             eeEEeccCCCceEEEec--ccceeEeeeecc--eEEEeccccceeeeeec-cEEEEeccCC-------------------
Confidence            99999999888876432  567888888654  46667778889999875 4444333311                   


Q ss_pred             CCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310         1039 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus      1039 ~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
                      +...++.+..-+|-  .+|-.++..+.++|+.
T Consensus       285 s~~c~s~s~~~~p~--k~~s~ag~s~~~~i~~  314 (325)
T KOG0649|consen  285 STACYSASWQTSPI--KFISIAGFSNKLHILK  314 (325)
T ss_pred             ccceeeecccCCce--EEEEecccceeeeeee
Confidence            11133333444442  5677777788888774

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.76  E-value=8.7e-18  Score=176.18  Aligned_cols=262  Identities=15%  Similarity=0.198  Sum_probs=197.0

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEec-----CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-----GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~-----~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~  465 (1103)
                      .+..|...|++++|.|-...|++++.||++.+|++.     ....+.++.++++|.++|.|++++++++  .+++|+.||
T Consensus       289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg  366 (577)
T KOG0642|consen  289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG  366 (577)
T ss_pred             eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence            467799999999999999999999999999999992     2334677889999999999999999999  799999999


Q ss_pred             ceEEEeCCCC----------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc--cEE
Q 001310          466 TIKVWDAVTG----------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL--GCT  533 (1103)
Q Consensus       466 ~i~iwd~~~~----------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~  533 (1103)
                      +|+.|++...          .....+.||.+.|+.++++..++  .|++++.||+++.|+...... .++.....  --.
T Consensus       367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl  443 (577)
T KOG0642|consen  367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL  443 (577)
T ss_pred             eeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence            9999965421          22356789999999999987664  699999999999998776555 22322222  223


Q ss_pred             EEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc----cCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310          534 RMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1103)
Q Consensus       534 ~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  608 (1103)
                      ++.+.... ...++...    .+.-.+.+...+..+..+.....    ....+..+.++|.+...+++.+|+.|+++|..
T Consensus       444 svd~~ss~~a~~~~s~~----~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~  519 (577)
T KOG0642|consen  444 SVDRTSSRPAHSLASFR----FGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK  519 (577)
T ss_pred             eEeeccchhHhhhhhcc----cccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence            34443322 11222111    12223444444444444432221    12457788899999999999999999999999


Q ss_pred             CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccc
Q 001310          609 KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL  663 (1103)
Q Consensus       609 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~  663 (1103)
                      ++..+.....|  ...+.++++.|+|.+|++++.|+.+++|.+....++.....|
T Consensus       520 ~~~~l~s~~a~--~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  520 TGKILHSMVAH--KDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ccccchheeec--cceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence            99999888766  456899999999999999999999999999877666554433

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.75  E-value=3.8e-17  Score=154.72  Aligned_cols=307  Identities=16%  Similarity=0.185  Sum_probs=199.1

Q ss_pred             EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1103)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i  648 (1103)
                      ..+++|.   ..++++.|..++ +|++|..-|.|.+|++.+......+..++. ..|..+.--|+ ..+.+-+.|+.+.+
T Consensus         8 fvLRp~~---~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~-~~it~lq~~p~-d~l~tqgRd~~L~l   81 (323)
T KOG0322|consen    8 FVLRPHS---SSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGR-LFITNLQSIPN-DSLDTQGRDPLLIL   81 (323)
T ss_pred             eEecccc---chheehhhccch-hhhcccccceEEEEEeecCccchhhhhhcc-ceeeceeecCC-cchhhcCCCceEEE
Confidence            3455555   889999998775 599999999999999999988888875543 45777777776 57888899999999


Q ss_pred             EEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1103)
Q Consensus       649 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1103)
                      |++.....+..   |+-.++.+-|.+.......             .+....++.-+. +.-.+-..+.+...+......
T Consensus        82 w~ia~s~~i~i---~Si~~nslgFCrfSl~~~~-------------k~~eqll~yp~r-gsde~h~~D~g~~tqv~i~dd  144 (323)
T KOG0322|consen   82 WTIAYSAFISI---HSIVVNSLGFCRFSLVKKP-------------KNSEQLLEYPSR-GSDETHKQDGGDTTQVQIADD  144 (323)
T ss_pred             EEccCcceEEE---eeeeccccccccceeccCC-------------CcchhheecCCc-ccchhhhhccCccceeEccCc
Confidence            99987544322   2233333344332211100             011111111111 110011111112222222222


Q ss_pred             cCccccccEEEEEEec-CCc--EEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310          729 PSKVKANKISRLTYNN-GGQ--AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1103)
Q Consensus       729 ~~~~~~~~i~~~~~s~-~g~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  805 (1103)
                      +.....+.+.+..+.. ++.  .+++|-.+|.+.+||+........-       ...|...         ..-..|..+|
T Consensus       145 ~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~-------~~~~kv~---------~~~ash~qpv  208 (323)
T KOG0322|consen  145 SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQL-------PQSSKVE---------SPNASHKQPV  208 (323)
T ss_pred             hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeecc-------ccccccc---------cchhhccCcc
Confidence            2234455666655322 232  3456667899999999875321110       1111111         1112488999


Q ss_pred             eEEEEecCCCEEEEEc-CCeEEEEEcCC--cee--eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001310          806 PCFALSKNDAYLFSAS-GGVISLYIVMT--FKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~-dg~i~iwd~~~--~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1103)
                      .++.+.+.-..=++++ +..+..|.++.  +.+  ..++...+..|..+.+-| |++++|+++.||.|+||+.++...+.
T Consensus       209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLA  287 (323)
T KOG0322|consen  209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLA  287 (323)
T ss_pred             eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchh
Confidence            9999987655555555 56788888763  222  222333456788899999 99999999999999999999999999


Q ss_pred             EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 001310          881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDV  915 (1103)
Q Consensus       881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~  915 (1103)
                      .++-|++.|.+++|+||..++|.+|.|++|.+|++
T Consensus       288 VLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  288 VLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99999999999999999999999999999999986

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.75  E-value=7.6e-18  Score=172.99  Aligned_cols=302  Identities=16%  Similarity=0.227  Sum_probs=234.9

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      .+...|.+|.+-|..|.|...|. +|++|+.|..|.+||+.++.....+                  ..||...|..-.|
T Consensus       133 ~l~~kL~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~f------------------~SGH~~NvfQaKF  193 (559)
T KOG1334|consen  133 RLQKKLNKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLSF------------------ESGHCNNVFQAKF  193 (559)
T ss_pred             hhhhcccCCCCccceeeecccCc-eeeccCccceEEeehhhccCccccc------------------ccccccchhhhhc
Confidence            34567889999999999999998 7999999999999999998876542                  5689888988889


Q ss_pred             CC--CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-
Q 001310          405 SP--DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-  481 (1103)
Q Consensus       405 sp--dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-  481 (1103)
                      -|  +.+.+++++.||.|++=.+.....+.....+..|.++|.-++.-|+... .|.+++.|+.+.-.|+.++.+...+ 
T Consensus       194 iP~s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~  272 (559)
T KOG1334|consen  194 IPFSGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFV  272 (559)
T ss_pred             cCCCCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceee
Confidence            88  5678999999999999887655544444467789999999999999887 7999999999999999887665433 


Q ss_pred             --ecCCC---ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee------EEe------cCCCccEEEEEEccCCCEE
Q 001310          482 --EGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR------VDY------DAPGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       482 --~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~------~~~------~~~~~~i~~~~~s~dg~~l  544 (1103)
                        ..+..   ...+++.+|. +...+++++.|..+++||.+.-...      ..+      ....-.|++++|+.++.-|
T Consensus       273 cr~~~~~~~v~L~~Ia~~P~-nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sEl  351 (559)
T KOG1334|consen  273 CREADEKERVGLYTIAVDPR-NTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSEL  351 (559)
T ss_pred             eeccCCccceeeeeEecCCC-CccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccce
Confidence              22333   4567777765 3458999999999999997643322      111      1223368999999777666


Q ss_pred             EEEecCCCCceeEEEEeCCC--C----------eeE-EEEecccccCCceEEEE-EcCCCCEEEEEeCCCcEEEEECCCC
Q 001310          545 FSCGTSKEGESFLVEWNESE--G----------AIK-RTYQGLQLQHNSVSVVH-FDTAKDQILAAGDDHVIKIWDMNKV  610 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~--~----------~~~-~~~~~~~~~~~~v~~~~-~~~~~~~l~~~~~dg~i~iwd~~~~  610 (1103)
                      .+...    +-.|+++....  |          ..+ +.++||... ..|..+- |.|..+++++|++-|.|.||+-.++
T Consensus       352 LaSYn----De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~-~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~  426 (559)
T KOG1334|consen  352 LASYN----DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNS-RTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG  426 (559)
T ss_pred             eeeec----ccceEEeccccccCCCCCCCcchhhccchhhcccccc-cccceeeeccCccceEEecCccceEEEEecchh
Confidence            66554    34488885432  2          222 337888722 3466664 5688899999999999999999999


Q ss_pred             eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      +.+..+.+..+  .|+|+.-+|--..||+.+-|..|+||.-.+.
T Consensus       427 eii~~MegDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~~  468 (559)
T KOG1334|consen  427 EIIRFMEGDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLTA  468 (559)
T ss_pred             HHHHHhhcccc--eEeccCCCCCCchhhccCCccceeeecCCcc
Confidence            99999888766  5899999999999999999999999987544

>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]

Probab=99.74  E-value=5.2e-17  Score=153.80  Aligned_cols=293  Identities=17%  Similarity=0.193  Sum_probs=200.3

Q ss_pred             ccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeecc-CCCccEEE
Q 001310          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVR-DPGVSVNR  401 (1103)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~  401 (1103)
                      |......|++|.+.|+++.|-.+++  |.+|...|.|++|++.+......                   +. .|+..|+.
T Consensus         3 pPdP~fvLRp~~~~v~s~~fqa~~r--L~sg~~~G~V~~w~lqt~r~~~~-------------------~r~~g~~~it~   61 (323)
T KOG0322|consen    3 PPDPFFVLRPHSSSVTSVLFQANER--LMSGLSVGIVKMWVLQTERDLPL-------------------IRLFGRLFITN   61 (323)
T ss_pred             CCCCeeEeccccchheehhhccchh--hhcccccceEEEEEeecCccchh-------------------hhhhccceeec
Confidence            3445577889999999999999986  78899999999999998765543                   33 37788999


Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC-----CCce--EEEEEcCCC-ceEEEeCC
Q 001310          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-----CKQI--SVITCGDDK-TIKVWDAV  473 (1103)
Q Consensus       402 ~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-----~~~~--~l~s~~~d~-~i~iwd~~  473 (1103)
                      +.--|+ ..|.+-+.|..+.+|++..+..+      .-|.-.++++-|.+-     ++..  .++.-+... .+.+-|..
T Consensus        62 lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i------~i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g  134 (323)
T KOG0322|consen   62 LQSIPN-DSLDTQGRDPLLILWTIAYSAFI------SIHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGG  134 (323)
T ss_pred             eeecCC-cchhhcCCCceEEEEEccCcceE------EEeeeeccccccccceeccCCCcchhheecCCcccchhhhhccC
Confidence            999887 56777789999999999876432      245556666666542     2110  111111100 01222221


Q ss_pred             CCceeEEe----ecCCCceEEEEeeecCC-ccEEEEEECCCeEEEEEcCCCCeeE----------EecCCCccEEEEEEc
Q 001310          474 TGSRTYSF----EGHGAPVYSLCPHAKEN-IHFIFSISVDGKIKAWLYDSLGARV----------DYDAPGLGCTRMAYS  538 (1103)
Q Consensus       474 ~~~~~~~~----~~~~~~v~~~~~~~~~~-~~~l~s~~~dg~i~iwd~~~~~~~~----------~~~~~~~~i~~~~~s  538 (1103)
                      ....++..    .+..+.+.+..+..... .-++++|.++|.+.+||+.++....          ....+..++.++.+.
T Consensus       135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldya  214 (323)
T KOG0322|consen  135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYA  214 (323)
T ss_pred             ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeec
Confidence            11112111    12234555555322222 2356788899999999999874433          344567789999888


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCC--Cee-EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 001310          539 ANGRRLFSCGTSKEGESFLVEWNESE--GAI-KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  615 (1103)
                      +.-..=++++.    +..+..|+++.  +.+ ++......  +..+..+..-||++.+++++.|+.||||+.++.+++..
T Consensus       215 s~~~rGisgga----~dkl~~~Sl~~s~gslq~~~e~~lk--npGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAV  288 (323)
T KOG0322|consen  215 SSCDRGISGGA----DDKLVMYSLNHSTGSLQIRKEITLK--NPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAV  288 (323)
T ss_pred             hhhcCCcCCCc----cccceeeeeccccCcccccceEEec--CCCccceEEccCCcEEeecccCCcEEEEEeccCCchhh
Confidence            75554455443    33466776653  222 11111111  35688889999999999999999999999999999999


Q ss_pred             EcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      +..|.  ..|++++|+|+.+++|.++.|+.|.+|++
T Consensus       289 LkyHs--agvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  289 LKYHS--AGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             hhhhh--cceeEEEeCCCCchhhhccCCceEEeeec
Confidence            99885  56999999999999999999999999986

>KOG0649 consensus WD40 repeat protein [General function prediction only]

Probab=99.74  E-value=2.3e-15  Score=140.77  Aligned_cols=278  Identities=16%  Similarity=0.209  Sum_probs=193.5

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCC---CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG---QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      .|.+-++||.++ +|+.|..+|+|.+..+.+-   +...            ....+.....+|.++|+.++|.  .++|+
T Consensus        12 tvf~qa~sp~~~-~l~agn~~G~iav~sl~sl~s~sa~~------------~gk~~iv~eqahdgpiy~~~f~--d~~Ll   76 (325)
T KOG0649|consen   12 TVFAQAISPSKQ-YLFAGNLFGDIAVLSLKSLDSGSAEP------------PGKLKIVPEQAHDGPIYYLAFH--DDFLL   76 (325)
T ss_pred             HHHHHhhCCcce-EEEEecCCCeEEEEEehhhhccccCC------------CCCcceeeccccCCCeeeeeee--hhhee
Confidence            566778999998 6999999999999998542   1110            0111122257899999999998  55677


Q ss_pred             EEeCCCeEEEEEecCCCc---cccceE--ecccc-----ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310          413 VAYSKHIVQLYAYHGGSD---ARQQLE--IDAHV-----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~---~~~~~~--l~~h~-----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  482 (1103)
                      +|+ ||.|+=|.+.....   .++...  ..-|.     -.|+++...|...  -++.++.|+.++.||+++|+..++++
T Consensus        77 s~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~en--Si~~AgGD~~~y~~dlE~G~i~r~~r  153 (325)
T KOG0649|consen   77 SGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSEN--SILFAGGDGVIYQVDLEDGRIQREYR  153 (325)
T ss_pred             ecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCC--cEEEecCCeEEEEEEecCCEEEEEEc
Confidence            764 59999998865332   111111  11222     2588999998777  46666689999999999999999999


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCc----------cEEEEEEccCCCEEEEEecCCC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGL----------GCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~----------~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      ||++.|.++.-..  ....+++|++||++|+||.++.+....+....+          .|.++  .-+..+|++++.   
T Consensus       154 GHtDYvH~vv~R~--~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~edWlvCGgG---  226 (325)
T KOG0649|consen  154 GHTDYVHSVVGRN--ANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNEDWLVCGGG---  226 (325)
T ss_pred             CCcceeeeeeecc--cCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccCceEEecCC---
Confidence            9999999998632  334799999999999999999988776543322          34444  456678888764   


Q ss_pred             CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                        ..+.+|++++.+....+.-.    ..+..+.|..  +.+++++..+.|.-|.+. |......+...  ....+..++.
T Consensus       227 --p~lslwhLrsse~t~vfpip----a~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s--~~c~s~s~~~  295 (325)
T KOG0649|consen  227 --PKLSLWHLRSSESTCVFPIP----ARVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVES--TACYSASWQT  295 (325)
T ss_pred             --CceeEEeccCCCceEEEecc----cceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCc--cceeeecccC
Confidence              34999999999998888764    3778888854  578888888889999874 44444444332  2344444443


Q ss_pred             C-CCEEEEEECCCeEEEE
Q 001310          633 N-GTLLAVIANENRIKIL  649 (1103)
Q Consensus       633 ~-g~~l~~~~~dg~i~iw  649 (1103)
                      . -+++-.++..+.+.++
T Consensus       296 ~p~k~~s~ag~s~~~~i~  313 (325)
T KOG0649|consen  296 SPIKFISIAGFSNKLHIL  313 (325)
T ss_pred             CceEEEEecccceeeeee
Confidence            2 2345555556666654

>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]

Probab=99.74  E-value=3.4e-17  Score=171.77  Aligned_cols=271  Identities=14%  Similarity=0.190  Sum_probs=192.8

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      ...+|..|.+.|.+++|.|-.. .|++++.||++.+|+++....-...           ...+-..+.+|.++|-|++++
T Consensus       286 ik~tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~  353 (577)
T KOG0642|consen  286 IKFTLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVP  353 (577)
T ss_pred             eeeeeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEec
Confidence            3448889999999999999987 7999999999999999431111100           011122378999999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCC-------ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          406 PDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      +++..+.+|+.||+|+.|++....       .......+.||.+.|+.+++++...  .|++++.||+++.|+.....+ 
T Consensus       354 ~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~-  430 (577)
T KOG0642|consen  354 SNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESP-  430 (577)
T ss_pred             CCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCc-
Confidence            999999999999999999664211       1122235779999999999999887  699999999999999766555 


Q ss_pred             EEeecCC--CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-------CccEEEEEEccCCCEEEEEec
Q 001310          479 YSFEGHG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       479 ~~~~~~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      .++....  +...++.+..+.- ...++...-+.--+.++........+...       ...+.-+...|.+...+.+..
T Consensus       431 ~~f~~~~e~g~Plsvd~~ss~~-a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he  509 (577)
T KOG0642|consen  431 CTFGEPKEHGYPLSVDRTSSRP-AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE  509 (577)
T ss_pred             cccCCccccCCcceEeeccchh-HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc
Confidence            3443222  2233444321110 11122222222223333333333322211       124667788888888888765


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  619 (1103)
                          +..|+++|..++..+.....|.   ..++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus       510 ----d~~Ir~~dn~~~~~l~s~~a~~---~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~  572 (577)
T KOG0642|consen  510 ----DRSIRFFDNKTGKILHSMVAHK---DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH  572 (577)
T ss_pred             ----CCceecccccccccchheeecc---ceecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence                6679999999999999988887   89999999999999999999999999999887776655544

>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]

Probab=99.73  E-value=2.5e-15  Score=156.03  Aligned_cols=272  Identities=13%  Similarity=0.139  Sum_probs=185.9

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .|+.-|.|+.|+.+.. ++.+++.+..+.-||+.+.+.. ...++        ..|-.  -.-|-.+ .+..=-.....+
T Consensus        12 r~~e~vc~v~w~~~ee-i~~~~dDh~~~~~~~~~~~s~~-~~~~p--------~df~p--t~~h~~~-rs~~~g~~~d~~   78 (737)
T KOG1524|consen   12 RNSEKVCCVDWSSNEE-IYFVSDDHQIFKWSDVSRDSVE-VAKLP--------DDFVP--TDMHLGG-RSSGGGKGSDTL   78 (737)
T ss_pred             ccceeEEeecccccce-EEEeccCceEEEeecccchhhh-hhhCC--------cccCC--ccccccc-cccCCCCCcceE
Confidence            5666788999999987 5665554444444444433221 10100        00000  0001000 000000123578


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  491 (1103)
                      +.++.||.+.|-+-.. +.   ......|.+.|.+-.|+|||.  -|++++.||.|++|. ++|-...++.....+|+|+
T Consensus        79 ~i~s~DGkf~il~k~~-rV---E~sv~AH~~A~~~gRW~~dGt--gLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~  151 (737)
T KOG1524|consen   79 LICSNDGRFVILNKSA-RV---ERSISAHAAAISSGRWSPDGA--GLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCA  151 (737)
T ss_pred             EEEcCCceEEEecccc-hh---hhhhhhhhhhhhhcccCCCCc--eeeeecCCceEEEEe-ccchHHHHHhhcCceeEEE
Confidence            8888999888877543 22   225678999999999999999  799999999999999 7887766776778899999


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      +|.|+.+ ..+++.+  +.+.|=-+........++.|.+-|.++.|++..+.+++++.    |....+||.. |..+..-
T Consensus       152 ~W~p~S~-~vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGE----D~kfKvWD~~-G~~Lf~S  223 (737)
T KOG1524|consen  152 RWAPNSN-SIVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGE----DFRFKIWDAQ-GANLFTS  223 (737)
T ss_pred             EECCCCC-ceEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccccceeecCC----ceeEEeeccc-CcccccC
Confidence            9977654 3444433  45566666777778889999999999999999999999975    7779999965 5554444


Q ss_pred             ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1103)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw  649 (1103)
                      ..|.   .+|++++|+|+ +.++.++. ++++            +... ....|..++||+||..+++|+..|.+.+=
T Consensus       224 ~~~e---y~ITSva~npd-~~~~v~S~-nt~R------------~~~p-~~GSifnlsWS~DGTQ~a~gt~~G~v~~A  283 (737)
T KOG1524|consen  224 AAEE---YAITSVAFNPE-KDYLLWSY-NTAR------------FSSP-RVGSIFNLSWSADGTQATCGTSTGQLIVA  283 (737)
T ss_pred             Chhc---cceeeeeeccc-cceeeeee-eeee------------ecCC-CccceEEEEEcCCCceeeccccCceEEEe
Confidence            5555   89999999999 55555553 3444            2211 13458899999999999999999987653

>KOG4227 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=2.6e-16  Score=156.54  Aligned_cols=295  Identities=12%  Similarity=0.086  Sum_probs=210.7

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCC---ccccceEe-ccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS---DARQQLEI-DAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~---~~~~~~~l-~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i  467 (1103)
                      +.+|.+.|.++.||.++++||+|+.|..+++|++..--   ..+++... ..|...|.|++|...++  .+++|+.+++|
T Consensus        52 ~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~--~~~SG~~~~~V  129 (609)
T KOG4227|consen   52 VREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENR--FLYSGERWGTV  129 (609)
T ss_pred             hhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCe--eEecCCCccee
Confidence            67899999999999999999999999999999986421   11222122 24668999999998887  89999999999


Q ss_pred             EEEeCCCCceeEEeec--CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccCCC
Q 001310          468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGR  542 (1103)
Q Consensus       468 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~  542 (1103)
                      ...|+++.+.+..+..  ..+.|+.+..+|.  ...+++.+.+|.|.+||.+....   .......+.....+.|+|...
T Consensus       130 I~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~--DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P  207 (609)
T KOG4227|consen  130 IKHDIETKQSIYVANENNNRGDVYHMDQHPT--DNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETP  207 (609)
T ss_pred             EeeecccceeeeeecccCcccceeecccCCC--CceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCc
Confidence            9999999999988752  2358999999876  36899999999999999987652   233344555788899999887


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCee-EEE---EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310          543 RLFSCGTSKEGESFLVEWNESEGAI-KRT---YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~-~~~---~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                      .|+.......+   +.+||.+.... +..   +.+.......-.++.|+|+|+.+++.-....=.+||+.+..+......
T Consensus       208 ~Li~~~~~~~G---~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D  284 (609)
T KOG4227|consen  208 ALILVNSETGG---PNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSD  284 (609)
T ss_pred             eeEEeccccCC---CCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEecc
Confidence            77665543333   78899875432 111   122221112335678999999999876666666788877544322222


Q ss_pred             CC-----CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC-----------------------eeEeccccccceeee
Q 001310          619 GG-----GLPENPRICFNKNGTLLAVIANENRIKILETPESN-----------------------SVDAAGVLSDNLRKL  670 (1103)
Q Consensus       619 ~~-----~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~-----------------------~~~~~~~~~~~i~~~  670 (1103)
                      |.     ....+.+++|-.|- .+++|+++=.|++|.+....                       .+..+++|..-+..+
T Consensus       285 ~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV  363 (609)
T KOG4227|consen  285 HNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV  363 (609)
T ss_pred             CCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence            11     12346678887654 49999999999999987321                       234455666666655


Q ss_pred             EEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                      .|+                      |...++++.+..+.+++|...
T Consensus       364 RF~----------------------~H~~~l~SSGVE~~~KlWS~~  387 (609)
T KOG4227|consen  364 RFS----------------------QHNNLLVSSGVENSFKLWSDH  387 (609)
T ss_pred             eec----------------------CCcceEeccchhhheeccccc
Confidence            555                      667778888888999999743

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.73  E-value=9.3e-17  Score=158.04  Aligned_cols=292  Identities=12%  Similarity=0.167  Sum_probs=204.2

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE--ecCCC-ccEE
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPG-LGCT  533 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~-~~i~  533 (1103)
                      .++++-..|+|++||..+++.+..++++...+..+.|........+.+++.||+|++||++.......  +..+. .+..
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~  121 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI  121 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence            67888889999999999999999999999999999997655667899999999999999998765443  33333 4677


Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCee-EEEEe-cccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCC
Q 001310          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI-KRTYQ-GLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKV  610 (1103)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~-~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~  610 (1103)
                      +++....++.++++..-...+..+.+||.+..+. ++.+. .|.   ..|+++.|+|.. +.|++||.||-|.+||+...
T Consensus       122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~---DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHN---DDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhcc---CcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            7777778888888876666678899999998766 55544 344   899999999975 67888999999999999754


Q ss_pred             ee----EEEEcCCCCCCCCceEEEecCC-CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccC
Q 001310          611 QL----LTTIDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN  685 (1103)
Q Consensus       611 ~~----~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  685 (1103)
                      ..    +.++.   ....|.++.|..++ +.+.+-+..++..+|+++.+.....+....-...  ..-        .-..
T Consensus       199 ~EeDaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~--d~r--------~~~~  265 (376)
T KOG1188|consen  199 NEEDALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSAD--DLR--------KEDN  265 (376)
T ss_pred             cchhhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhh--hHH--------hhhh
Confidence            22    22332   23458889999876 4588888899999999998865443322110000  000        0000


Q ss_pred             CceEecCCCCCCCccceeecc-ccccccccccccCCc-cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeec
Q 001310          686 GSVSVNEDPKEDVKPEISVEA-ENKSEVEKPLFARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1103)
Q Consensus       686 ~~~~~~~~~s~d~~~l~s~~~-d~~i~~w~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~  763 (1103)
                      ....++.....++...+.++. .+...++-+....+. ..........+|..-|+++.|...+..+.+|+.||.+.+|..
T Consensus       266 ~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~  345 (376)
T KOG1188|consen  266 CDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV  345 (376)
T ss_pred             hhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence            011222222234444444443 566666655432221 222233344557788899999999999999999999999985


Q ss_pred             C
Q 001310          764 P  764 (1103)
Q Consensus       764 ~  764 (1103)
                      +
T Consensus       346 ~  346 (376)
T KOG1188|consen  346 E  346 (376)
T ss_pred             C
Confidence            3

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.73  E-value=1e-15  Score=147.06  Aligned_cols=290  Identities=18%  Similarity=0.274  Sum_probs=206.7

Q ss_pred             eEecccCCcCceEEEec--CCCceEEEEEcC----CCcEEEEEC--CCCCeeeeeeeeEeeccccccceeeeeccCCCcc
Q 001310          327 AQTLIEGSSSPMSMDFH--PVQHTLLLVGTN----VGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~s--pdg~~llasgs~----d~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  398 (1103)
                      +..+..+- .+.++.||  |+.+..||.|+.    .+.|.|-.+  ++++.+..-+                  ..|.-+
T Consensus        38 iy~Y~ap~-~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~------------------fd~~YP   98 (364)
T KOG0290|consen   38 IYTYNAPW-PLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDAN------------------FDHPYP   98 (364)
T ss_pred             EEEecCCC-ceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCC------------------CCCCCC
Confidence            45555654 78889998  666667899985    355655544  4455443322                  248899


Q ss_pred             EEEEEECCCCC-----EEEEEeCCCeEEEEEecCCC-ccccceEe-----ccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310          399 VNRVVWSPDGS-----LLGVAYSKHIVQLYAYHGGS-DARQQLEI-----DAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       399 V~~~~~spdg~-----~las~~~d~~i~iwd~~~~~-~~~~~~~l-----~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i  467 (1103)
                      ++.+-|.||.+     +||+++ | .+++|.+...+ .+.....+     ..+..++++..|+.-..+ ++.+.+-|-+.
T Consensus        99 ~tK~~wiPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTC  175 (364)
T KOG0290|consen   99 VTKLMWIPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTC  175 (364)
T ss_pred             ccceEecCCccccCcchhhccc-C-eEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeE
Confidence            99999999873     566653 3 59999997422 12211122     245678999999876655 89999999999


Q ss_pred             EEEeCCCCce---eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee-EEecCC--CccEEEEEEcc-C
Q 001310          468 KVWDAVTGSR---TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAP--GLGCTRMAYSA-N  540 (1103)
Q Consensus       468 ~iwd~~~~~~---~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~--~~~i~~~~~s~-d  540 (1103)
                      .|||+++|..   ...+-.|...|..++|.. +....+++.+.||.+|++|++..+-- ..+...  ..+...++|++ |
T Consensus       176 TiWdie~~~~~~vkTQLIAHDKEV~DIaf~~-~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqD  254 (364)
T KOG0290|consen  176 TIWDIETGVSGTVKTQLIAHDKEVYDIAFLK-GSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQD  254 (364)
T ss_pred             EEEEEeeccccceeeEEEecCcceeEEEecc-CccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCC
Confidence            9999999743   456778999999999975 34578999999999999999876532 233332  34778888887 4


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCee------
Q 001310          541 GRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQL------  612 (1103)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~------  612 (1103)
                      -+++++...+   ...|.+.|++. ...+..+++|.   ..|+.++|.|.. .++.++++|..+.+||+...-.      
T Consensus       255 pnymATf~~d---S~~V~iLDiR~P~tpva~L~~H~---a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dP  328 (364)
T KOG0290|consen  255 PNYMATFAMD---SNKVVILDIRVPCTPVARLRNHQ---ASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDP  328 (364)
T ss_pred             chHHhhhhcC---CceEEEEEecCCCcceehhhcCc---ccccceEecCCCCceeeecCCcceEEEEecccccccCCCCc
Confidence            5566665543   34488999985 45678888888   999999999974 6788899999999999975322      


Q ss_pred             EEEEcCCCCCCCCceEEEec-CCCEEEEEECCCeEEEE
Q 001310          613 LTTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKIL  649 (1103)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~iw  649 (1103)
                      +....   ....|+.+.|++ .+.+++++.. +.+.+.
T Consensus       329 ilay~---a~~EVNqi~Ws~~~~Dwiai~~~-kkleiL  362 (364)
T KOG0290|consen  329 ILAYT---AGGEVNQIQWSSSQPDWIAICFG-KKLEIL  362 (364)
T ss_pred             hhhhh---ccceeeeeeecccCCCEEEEEec-CeeeEE
Confidence            11122   234689999996 5677877765 345443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.73  E-value=8.8e-15  Score=161.52  Aligned_cols=198  Identities=12%  Similarity=0.140  Sum_probs=126.4

Q ss_pred             eEEEEecCCCEEEEEc--CCeEEEEEcCC-c---eeeEEecCCCCCeeEEEEcCCCCCEEE-EEeCCCeEEEEEcCCcee
Q 001310          806 PCFALSKNDAYLFSAS--GGVISLYIVMT-F---KTILTIMPPSPTATSLAFNPHDNNVIA-IGMDDSTILIYNARSSEV  878 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~--dg~i~iwd~~~-~---~~~~~~~~~~~~i~~l~~s~~d~~~la-sg~~dg~v~iwd~~~~~~  878 (1103)
                      ..++++|+++++++++  ++.|.+|++.+ +   +.+..+. +.....+++++| ++++++ +...++.|.+||+.+...
T Consensus        83 ~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p-~g~~l~v~~~~~~~v~v~d~~~~g~  160 (330)
T PRK11028         83 THISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDP-DNRTLWVPCLKEDRIRLFTLSDDGH  160 (330)
T ss_pred             eEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCC-CCCEEEEeeCCCCEEEEEEECCCCc
Confidence            3456666666666554  46666666653 2   1122222 223466788999 777665 555679999999986332


Q ss_pred             EE-------EeccCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCC--CceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310          879 IS-------KLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       879 ~~-------~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg  948 (1103)
                      +.       .... ......++|+|||++++++.. +++|.+|+++.  ++......+...............+.|+|||
T Consensus       161 l~~~~~~~~~~~~-g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg  239 (330)
T PRK11028        161 LVAQEPAEVTTVE-GAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDG  239 (330)
T ss_pred             ccccCCCceecCC-CCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCC
Confidence            21       1111 234678999999999988776 89999999984  3332222222211111111234569999999


Q ss_pred             CEEEEE--eCCeEEEEECCCce----EEEEeeCCCCcCeEEEEEccCCCEEEEEec-CCcEEEEeCC
Q 001310          949 TRFLLV--HETHLAIYEAEELT----CLKQWFPISSVPISQATFSCDCRMVFTSFV-DGTLSIHEAS 1008 (1103)
Q Consensus       949 ~~l~~~--~d~~v~iwd~~~~~----~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~-dg~v~vWd~~ 1008 (1103)
                      ++++++  .++.|.+|+++...    .+.....  ......+.|+|||++|+++.. +++|.+|+++
T Consensus       240 ~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        240 RHLYACDRTASLISVFSVSEDGSVLSFEGHQPT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEID  304 (330)
T ss_pred             CEEEEecCCCCeEEEEEEeCCCCeEEEeEEEec--cccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence            999996  46789999986432    2222222  124557899999999998875 8999999874

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.73  E-value=4.8e-15  Score=147.90  Aligned_cols=241  Identities=11%  Similarity=0.165  Sum_probs=184.2

Q ss_pred             CCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCceeE
Q 001310          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVI  879 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~~~~~~  879 (1103)
                      ...+..+.|..|...|..|+....++|.................|..+-|+.   .++|..+.+  +.++++++..+..+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~I   81 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTTI   81 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCceE
Confidence            4456677788899999999877778888876555333334455677788876   366666554  46999999988877


Q ss_pred             EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-E--eC
Q 001310          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-V--HE  956 (1103)
Q Consensus       880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~--~d  956 (1103)
                      ..+. ....|.++.+.  .++|+++=.+. |+|||+++-+     .+.+.....+....+.++++++.+.+||. +  ..
T Consensus        82 Ce~~-fpt~IL~VrmN--r~RLvV~Lee~-IyIydI~~Mk-----lLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~  152 (391)
T KOG2110|consen   82 CEIF-FPTSILAVRMN--RKRLVVCLEES-IYIYDIKDMK-----LLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS  152 (391)
T ss_pred             EEEe-cCCceEEEEEc--cceEEEEEccc-EEEEecccce-----eehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence            7766 45678888885  45666666555 9999999854     34444333222235677777778889998 3  66


Q ss_pred             CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCc-EEEEeCCCceeEEeeccccccCCCCCCCceeeEe
Q 001310          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC 1035 (1103)
Q Consensus       957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1035 (1103)
                      |.|.+||+.+.+.+.. ...|.+++.+++|++||.+|||+|+.|+ |||+.+.+|+.+..|++..+ +            
T Consensus       153 GdV~l~d~~nl~~v~~-I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~-~------------  218 (391)
T KOG2110|consen  153 GDVVLFDTINLQPVNT-INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTY-P------------  218 (391)
T ss_pred             ceEEEEEcccceeeeE-EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCce-e------------
Confidence            8999999999999887 5589999999999999999999999988 89999999999999984332 2            


Q ss_pred             eccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCC
Q 001310         1036 YCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075 (1103)
Q Consensus      1036 ~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1075 (1103)
                            +.-.+++|+|+ +++|++.+..++||+|++....
T Consensus       219 ------~~IySL~Fs~d-s~~L~~sS~TeTVHiFKL~~~~  251 (391)
T KOG2110|consen  219 ------VSIYSLSFSPD-SQFLAASSNTETVHIFKLEKVS  251 (391)
T ss_pred             ------eEEEEEEECCC-CCeEEEecCCCeEEEEEecccc
Confidence                  33457899999 8999999999999999985433

>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]

Probab=99.72  E-value=1.8e-17  Score=180.42  Aligned_cols=288  Identities=14%  Similarity=0.205  Sum_probs=226.6

Q ss_pred             eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001310          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  646 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i  646 (1103)
                      .++.+.+|.   +.|.|+.|...|.++++|++|..++||.++++.++....+|.  ..++.++.+.+..++++++.|..|
T Consensus       182 ~ikrLlgH~---naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs--~ditdlavs~~n~~iaaaS~D~vI  256 (1113)
T KOG0644|consen  182 NIKRLLGHR---NAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHS--GDITDLAVSSNNTMIAAASNDKVI  256 (1113)
T ss_pred             HHHHHHhhh---hheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCc--cccchhccchhhhhhhhcccCceE
Confidence            345566766   899999999999999999999999999999999999998775  468999999999999999999999


Q ss_pred             EEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceee
Q 001310          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1103)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  726 (1103)
                      ++|.+..+.++..+++|.+.|++++|+|.                          .+.+.||++++||......  ...-
T Consensus       257 rvWrl~~~~pvsvLrghtgavtaiafsP~--------------------------~sss~dgt~~~wd~r~~~~--~y~p  308 (1113)
T KOG0644|consen  257 RVWRLPDGAPVSVLRGHTGAVTAIAFSPR--------------------------ASSSDDGTCRIWDARLEPR--IYVP  308 (1113)
T ss_pred             EEEecCCCchHHHHhccccceeeeccCcc--------------------------ccCCCCCceEecccccccc--ccCC
Confidence            99999999999999999999999999973                          2567889999999762110  0000


Q ss_pred             eccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCee
Q 001310          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1103)
Q Consensus       727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  806 (1103)
                      .-+.......+-++.|...+..+++++.++.-..|.++...               |                 +...+.
T Consensus       309 rp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~---------------~-----------------~~~~li  356 (1113)
T KOG0644|consen  309 RPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLA---------------W-----------------RSNLLI  356 (1113)
T ss_pred             CCCCcccccceeeeeccccccccccccCCcccccchhhHhh---------------h-----------------hccceE
Confidence            00111234567788888899999999999888777654211               1                 222222


Q ss_pred             EEEEecCC-CEEEEE-cCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001310          807 CFALSKND-AYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1103)
Q Consensus       807 ~l~~s~d~-~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1103)
                      -+..+.|- .+.+++ .+-.+++|++.+|...+.+.+|...+..+.++|.+.+...+++.||...|||+..|..++...-
T Consensus       357 f~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~  436 (1113)
T KOG0644|consen  357 FVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFI  436 (1113)
T ss_pred             EEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeec
Confidence            22233232 233333 3677999999999999999999999999999998888888999999999999999987766543


Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc
Q 001310          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1103)
Q Consensus       885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~  919 (1103)
                      -.+.+..-.||+||..++....-|.++|.....++
T Consensus       437 gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~  471 (1113)
T KOG0644|consen  437 GHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK  471 (1113)
T ss_pred             ccceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence            34567778999999999988888999998776654

>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.72  E-value=2e-14  Score=143.57  Aligned_cols=242  Identities=11%  Similarity=0.144  Sum_probs=186.1

Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  475 (1103)
                      ...+..+.|..|...|..|+.|| -++|+.+.-+...   ........|.-+-|+..=  +.+++...-+.+++.+...+
T Consensus         5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSSL--vaiV~~~qpr~Lkv~~~Kk~   78 (391)
T KOG2110|consen    5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSSL--VAIVSIKQPRKLKVVHFKKK   78 (391)
T ss_pred             CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccce--eEEEecCCCceEEEEEcccC
Confidence            34677778999999999999999 7888887644311   122223346666676532  13344433345999999888


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC---CccEEEEEEccCCCEEEEEecCCC
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---GLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      ..+..+. ...+|.++.++    .+.|+.+-.+. |.|||+.+.+...++...   ...+.++++++.+.+++.-+... 
T Consensus        79 ~~ICe~~-fpt~IL~VrmN----r~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t-  151 (391)
T KOG2110|consen   79 TTICEIF-FPTSILAVRMN----RKRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTT-  151 (391)
T ss_pred             ceEEEEe-cCCceEEEEEc----cceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCC-
Confidence            8887775 55678888874    34666665554 999999999888766543   34566677777777998765422 


Q ss_pred             CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                       .|.|++||..+-+.+..+..|.   +.+.+++|+++|..++++|+.|+ |||+.+.+|+.+..+........|.+++|+
T Consensus       152 -~GdV~l~d~~nl~~v~~I~aH~---~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs  227 (391)
T KOG2110|consen  152 -SGDVVLFDTINLQPVNTINAHK---GPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFS  227 (391)
T ss_pred             -CceEEEEEcccceeeeEEEecC---CceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEEC
Confidence             5569999999999999999888   99999999999999999999997 689999999999999866555678899999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCC
Q 001310          632 KNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       632 ~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      |++++|++.+..++|++|.++..
T Consensus       228 ~ds~~L~~sS~TeTVHiFKL~~~  250 (391)
T KOG2110|consen  228 PDSQFLAASSNTETVHIFKLEKV  250 (391)
T ss_pred             CCCCeEEEecCCCeEEEEEeccc
Confidence            99999999999999999998754

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.72  E-value=5.7e-16  Score=148.58  Aligned_cols=261  Identities=17%  Similarity=0.211  Sum_probs=186.4

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCC-------CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  400 (1103)
                      .+|..|.++|+.++-+|-.+++|++...+       ..+.||.+........  ...|       ..-..+-..+-+.|.
T Consensus        57 kvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~--~~tl-------E~v~~Ldteavg~i~  127 (370)
T KOG1007|consen   57 KVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN--SSTL-------ECVASLDTEAVGKIN  127 (370)
T ss_pred             hhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccc--cchh-------hHhhcCCHHHhCcee
Confidence            45678899999999999998899987653       2467888754322110  0000       000111224567999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCccccce---EeccccccEEEEEEec--CCCceEEEEEcCCCceEEEeCCCC
Q 001310          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTG  475 (1103)
Q Consensus       401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~---~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~  475 (1103)
                      |+.|.|++..||+-. |..|.+|++..+..+....   .-.+|....++-+|+|  ||.  .+++.+ |+++..||+++.
T Consensus       128 cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgn--qv~tt~-d~tl~~~D~RT~  203 (370)
T KOG1007|consen  128 CVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGN--QVATTS-DSTLQFWDLRTM  203 (370)
T ss_pred             eEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccc--eEEEeC-CCcEEEEEccch
Confidence            999999999999885 7779999999876532111   1123566788899999  666  455554 889999999998


Q ss_pred             ceeEEe-ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC-eeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          476 SRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       476 ~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      ++...+ ..|...|..+.|+|.. ..+|++++.||.|++||.+..+ ....+..|.+.+.++.|+|.-..|+..+.+   
T Consensus       204 ~~~~sI~dAHgq~vrdlDfNpnk-q~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~S---  279 (370)
T KOG1007|consen  204 KKNNSIEDAHGQRVRDLDFNPNK-QHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGS---  279 (370)
T ss_pred             hhhcchhhhhcceeeeccCCCCc-eEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCC---
Confidence            887776 4688999999998764 4689999999999999998765 456888999999999999976655544321   


Q ss_pred             ceeEEEEeCCCCe-----------------------------eEEEEecccccCCceEEEEEcCCCCEEE-EEeCCCcEE
Q 001310          554 ESFLVEWNESEGA-----------------------------IKRTYQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHVIK  603 (1103)
Q Consensus       554 ~~~i~iwd~~~~~-----------------------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~  603 (1103)
                      +..|.+|...+-.                             .+.++..|.   ..|.+++|+.-..+++ +-+.||.+.
T Consensus       280 Ds~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehE---DSVY~~aWSsadPWiFASLSYDGRvi  356 (370)
T KOG1007|consen  280 DSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHE---DSVYALAWSSADPWIFASLSYDGRVI  356 (370)
T ss_pred             CceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccc---cceEEEeeccCCCeeEEEeccCceEE
Confidence            5557777543211                             122344444   8999999998777765 578999988


Q ss_pred             EEECC
Q 001310          604 IWDMN  608 (1103)
Q Consensus       604 iwd~~  608 (1103)
                      |=.+.
T Consensus       357 Is~V~  361 (370)
T KOG1007|consen  357 ISSVP  361 (370)
T ss_pred             eecCC
Confidence            76654

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.72  E-value=4.5e-16  Score=161.91  Aligned_cols=246  Identities=16%  Similarity=0.151  Sum_probs=163.0

Q ss_pred             eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEEEeeecCCccEEEEEECCCeEEE
Q 001310          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKENIHFIFSISVDGKIKA  513 (1103)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~i  513 (1103)
                      .++.||++.|+|++|+.||.  +|++|++|-.+.|||....+.++.+ .+|.+.|.++.|.|..+...+++|..|..|++
T Consensus        44 ~eL~GH~GCVN~LeWn~dG~--lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~l  121 (758)
T KOG1310|consen   44 AELTGHTGCVNCLEWNADGE--LLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKL  121 (758)
T ss_pred             hhhccccceecceeecCCCC--EEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEE
Confidence            36889999999999999999  8999999999999999988888777 68999999999999999999999999999999


Q ss_pred             EEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCC-CE
Q 001310          514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQ  592 (1103)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~  592 (1103)
                      +|++..+...                         .+   +        ...+..+.+..|.   ..|..++-.|++ +.
T Consensus       122 fdl~~~~~~~-------------------------~d---~--------~~~~~~~~~~cht---~rVKria~~p~~Pht  162 (758)
T KOG1310|consen  122 FDLDSSKEGG-------------------------MD---H--------GMEETTRCWSCHT---DRVKRIATAPNGPHT  162 (758)
T ss_pred             Eecccccccc-------------------------cc---c--------Cccchhhhhhhhh---hhhhheecCCCCCce
Confidence            9987532210                         00   0        0011222333444   677788888888 67


Q ss_pred             EEEEeCCCcEEEEECCCCeeE--------EEEcCCCCCCCCceEEEec-CCCEEEEEECCCeEEEEEcCCC-CeeEec--
Q 001310          593 ILAAGDDHVIKIWDMNKVQLL--------TTIDAGGGLPENPRICFNK-NGTLLAVIANENRIKILETPES-NSVDAA--  660 (1103)
Q Consensus       593 l~~~~~dg~i~iwd~~~~~~~--------~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i~iw~~~~~-~~~~~~--  660 (1103)
                      +.++++||+|+-+|++....-        .........-...++..+| +..+|++|+.|--.++||.... +....-  
T Consensus       163 fwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~  242 (758)
T KOG1310|consen  163 FWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGT  242 (758)
T ss_pred             EEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCcc
Confidence            888999999999999863211        0011111223456889998 4668999999999999994321 111100  


Q ss_pred             --cccccceeeeE-EecCCceeeeeccC------CceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310          661 --GVLSDNLRKLS-VNPISTVTGAGIAN------GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1103)
Q Consensus       661 --~~~~~~i~~~~-~~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1103)
                        ........|+. |+|......-+...      ..+.|    +|+|.-++..-....|.++++...+......
T Consensus       243 ~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtf----npNGtElLvs~~gEhVYlfdvn~~~~~~~y~  312 (758)
T KOG1310|consen  243 MNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYVTF----NPNGTELLVSWGGEHVYLFDVNEDKSPTPYF  312 (758)
T ss_pred             ccCCCCcccchhheecCccccCcccccccceeeeEEEEE----CCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence              01111122222 22222211111111      12344    6777777766666678888887655443333

>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]

Probab=99.71  E-value=1.5e-15  Score=145.79  Aligned_cols=181  Identities=18%  Similarity=0.245  Sum_probs=128.9

Q ss_pred             eEEEEec--CCCEEEEEcCCeEEEEEcCCceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEE
Q 001310          806 PCFALSK--NDAYLFSASGGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISK  881 (1103)
Q Consensus       806 ~~l~~s~--d~~~l~~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~  881 (1103)
                      ++-+|+|  ||..+++.+|+++..||+.+.++...+. +|...|..+.|.|+...+||+++.||.|+|||.+. ..++..
T Consensus       174 tsg~WspHHdgnqv~tt~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~e  253 (370)
T KOG1007|consen  174 TSGAWSPHHDGNQVATTSDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQE  253 (370)
T ss_pred             cccccCCCCccceEEEeCCCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccc
Confidence            3445555  7899999999999999999887776665 57788999999997778999999999999999986 457899


Q ss_pred             eccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeE
Q 001310          882 LEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHL  959 (1103)
Q Consensus       882 l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v  959 (1103)
                      +.+|+..|.++.|.|. .++++|+|.|..|.+|...+-.-..                  .+.|-.|..---. ....++
T Consensus       254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~------------------qi~~~~dese~e~~dseer~  315 (370)
T KOG1007|consen  254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ------------------QIEFEDDESESEDEDSEERV  315 (370)
T ss_pred             cCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc------------------ccccccccccCcchhhHHhc
Confidence            9999999999999985 4788899999999999876522111                  1111111000000 000011


Q ss_pred             EEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEecCCcEEEEeCC
Q 001310          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~v~vWd~~ 1008 (1103)
                      +  -+.+|. +.+ +..|...|.+++||.-.- .+|+-+.||.+.|=.+.
T Consensus       316 k--pL~dg~-l~t-ydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~  361 (370)
T KOG1007|consen  316 K--PLQDGQ-LET-YDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP  361 (370)
T ss_pred             c--cccccc-ccc-ccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence            1  111122 122 567899999999987554 46778899998886554

>KOG1188 consensus WD40 repeat protein [General function prediction only]

Probab=99.71  E-value=4.6e-16  Score=153.25  Aligned_cols=275  Identities=14%  Similarity=0.157  Sum_probs=192.1

Q ss_pred             EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--CCCEEEEEeCCCeEEEEEec
Q 001310          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYH  426 (1103)
Q Consensus       349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~las~~~d~~i~iwd~~  426 (1103)
                      .+|++-..|.|++||..+|+.+..                   +++|...+..+.|..  ....+.+|+.||+|++||+.
T Consensus        42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R  102 (376)
T KOG1188|consen   42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR  102 (376)
T ss_pred             eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence            577787889999999999988765                   667888888999987  46788999999999999999


Q ss_pred             CCCccccceEecccc-ccEEEEEEecCCCceEEEEEc----CCCceEEEeCCCCce-eEEe-ecCCCceEEEEeeecCCc
Q 001310          427 GGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCG----DDKTIKVWDAVTGSR-TYSF-EGHGAPVYSLCPHAKENI  499 (1103)
Q Consensus       427 ~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~----~d~~i~iwd~~~~~~-~~~~-~~~~~~v~~~~~~~~~~~  499 (1103)
                      +......+ ...+|. .+..+++..-.++  ++++|.    .|-.|.+||++..+. +..+ ..|...|++++|+|+ +.
T Consensus       103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~-~p  178 (376)
T KOG1188|consen  103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPS-DP  178 (376)
T ss_pred             cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCC-CC
Confidence            87654433 345665 4566666655555  566664    356799999998776 5444 679999999999987 45


Q ss_pred             cEEEEEECCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccCC-CEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310          500 HFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1103)
                      .+|++||.||-|.++|+.....   ......+...|.++.|..++ +.+.+.+.    .....+|+++.+.....+....
T Consensus       179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~  254 (376)
T KOG1188|consen  179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD  254 (376)
T ss_pred             CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence            7999999999999999876532   22334456679999999988 23444433    3448999999887655444331


Q ss_pred             cc----------CCceEEEEEcCCCCEEEE-EeCCCcEEEEECC---CCe---eEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310          576 LQ----------HNSVSVVHFDTAKDQILA-AGDDHVIKIWDMN---KVQ---LLTTIDAGGGLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       576 ~~----------~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~---~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~  638 (1103)
                      ..          ..-|.+. ...+....+. |+.-+...++-+.   ++.   .+..+.++ +...|.++.|...+.++.
T Consensus       255 ~~~~d~r~~~~~dY~I~~~-~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~i~~~~~~~~l~  332 (376)
T KOG1188|consen  255 VSADDLRKEDNCDYVINEH-SPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRDILFDVKNDVLY  332 (376)
T ss_pred             chhhhHHhhhhhhheeecc-cCCCcceEEEeccccCceeEEEeeecccccccCccccccCC-cHHHHHHHhhhcccceee
Confidence            00          0112221 1123344444 4435666666443   333   23333332 334578888988899999


Q ss_pred             EEECCCeEEEEEcC
Q 001310          639 VIANENRIKILETP  652 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~  652 (1103)
                      +|+.||.+.+|..+
T Consensus       333 TGGEDG~l~~Wk~~  346 (376)
T KOG1188|consen  333 TGGEDGLLQAWKVE  346 (376)
T ss_pred             ccCCCceEEEEecC
Confidence            99999999999864

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.70  E-value=3.2e-14  Score=157.01  Aligned_cols=275  Identities=14%  Similarity=0.204  Sum_probs=177.6

Q ss_pred             eEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-CCCeEEEEEe
Q 001310          348 TLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAY  425 (1103)
Q Consensus       348 ~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~d~~i~iwd~  425 (1103)
                      ++.++...++.|.+||+.+ |+......                 + .+.+....++++||+++|++++ .++.|.+|++
T Consensus         3 ~~y~~~~~~~~I~~~~~~~~g~l~~~~~-----------------~-~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~   64 (330)
T PRK11028          3 IVYIASPESQQIHVWNLNHEGALTLLQV-----------------V-DVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI   64 (330)
T ss_pred             EEEEEcCCCCCEEEEEECCCCceeeeeE-----------------E-ecCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence            3455557789999999974 43221111                 1 1345677899999999987764 4778999999


Q ss_pred             cCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCCceEEEeCCC-Cc---eeEEeecCCCceEEEEeeecCCcc
Q 001310          426 HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVT-GS---RTYSFEGHGAPVYSLCPHAKENIH  500 (1103)
Q Consensus       426 ~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~-~~---~~~~~~~~~~~v~~~~~~~~~~~~  500 (1103)
                      .....+...... ........++|+|+++  ++++++ .++.|.+|++++ +.   .+..+.+ ......+++++  +++
T Consensus        65 ~~~g~l~~~~~~-~~~~~p~~i~~~~~g~--~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~-~~~~~~~~~~p--~g~  138 (330)
T PRK11028         65 ADDGALTFAAES-PLPGSPTHISTDHQGR--FLFSASYNANCVSVSPLDKDGIPVAPIQIIEG-LEGCHSANIDP--DNR  138 (330)
T ss_pred             CCCCceEEeeee-cCCCCceEEEECCCCC--EEEEEEcCCCeEEEEEECCCCCCCCceeeccC-CCcccEeEeCC--CCC
Confidence            732222211111 1233567899999999  455444 588999999874 32   2333322 23355566744  666


Q ss_pred             EEE-EEECCCeEEEEEcCCCCeeE-----Ee-cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Ce--eEE
Q 001310          501 FIF-SISVDGKIKAWLYDSLGARV-----DY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GA--IKR  569 (1103)
Q Consensus       501 ~l~-s~~~dg~i~iwd~~~~~~~~-----~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~--~~~  569 (1103)
                      +++ +...++.|.+||+++.....     .. ...+.....++|+|+|++++++..   .++.|.+|++..  ++  .+.
T Consensus       139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~  215 (330)
T PRK11028        139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ  215 (330)
T ss_pred             EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence            664 55567999999998643221     01 112345678999999999988763   356799999873  32  333


Q ss_pred             EEecccc---cCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCe----eEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310          570 TYQGLQL---QHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       570 ~~~~~~~---~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      .+.....   .......+.++|++++++++. .++.|.+|++....    .+......   .....++++|+|++|+++.
T Consensus       216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~  292 (330)
T PRK11028        216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG  292 (330)
T ss_pred             EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence            3332110   112234688999999999875 47899999986432    22222221   2356899999999999887


Q ss_pred             C-CCeEEEEEcC
Q 001310          642 N-ENRIKILETP  652 (1103)
Q Consensus       642 ~-dg~i~iw~~~  652 (1103)
                      . +++|.+|++.
T Consensus       293 ~~~~~v~v~~~~  304 (330)
T PRK11028        293 QKSHHISVYEID  304 (330)
T ss_pred             ccCCcEEEEEEc
Confidence            6 8899999875

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.69  E-value=2.9e-16  Score=159.71  Aligned_cols=198  Identities=17%  Similarity=0.199  Sum_probs=162.2

Q ss_pred             eEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001310          806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1103)
                      .+++|+.+|..+++++ ||++|+|++.+...+.....|...|.++.||| |+++|++-+.| ..+||+..+|..+.....
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~  225 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP  225 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence            7899999999999997 89999999988888888888999999999999 99999999999 899999999977766552


Q ss_pred             --CCCCEEEEEEccCC-----CEEEEEeCCCeEEEEEcCCCceeee-eeeecCCCcccCCCCceEEEEcCCCCEEEEE-e
Q 001310          885 --HSKRVTGLVFSDAL-----NILVSSGGDAQIFVWDVDGWGIQTC-RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H  955 (1103)
Q Consensus       885 --h~~~V~~l~~s~dg-----~~l~s~s~dg~I~iwd~~~~~~~~~-~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~  955 (1103)
                        -......+.|+.|+     ..++....-+.|+.|++........ +..+....+    ..|++++.|+||+++|.| .
T Consensus       226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~----~siSsl~VS~dGkf~AlGT~  301 (398)
T KOG0771|consen  226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRF----KSISSLAVSDDGKFLALGTM  301 (398)
T ss_pred             cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhcc----CcceeEEEcCCCcEEEEecc
Confidence              23346678898887     4444445566788877765332111 111122222    269999999999999996 8


Q ss_pred             CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          956 ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       956 d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      ||.|.|+++.+.+++.-....|..-|+.+.|+||.+++++.+.|....|..+.-
T Consensus       302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            999999999999999888889999999999999999999999999999988764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.67  E-value=1.2e-14  Score=162.97  Aligned_cols=194  Identities=17%  Similarity=0.164  Sum_probs=147.7

Q ss_pred             CCEEEEEcCCeEEEEEcCCceeeEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEeccCCCC-
Q 001310          814 DAYLFSASGGVISLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEGHSKR-  888 (1103)
Q Consensus       814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~h~~~-  888 (1103)
                      |.++++|.-..|+|||...-...+.+.. ....|+++.-+...|..+++|..||.|++||.+..   ..+...+.|++. 
T Consensus      1178 G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~ 1257 (1387)
T KOG1517|consen 1178 GHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVE 1257 (1387)
T ss_pred             CeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcc
Confidence            4444444457899999988777777654 44578888776657899999999999999998764   356778889988 


Q ss_pred             -EEEEEEccCCC-EEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC
Q 001310          889 -VTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE  966 (1103)
Q Consensus       889 -V~~l~~s~dg~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~  966 (1103)
                       |..+.+-+.|- .|++|+.||.|++||+..........+   ..+...++..+++..+++...+|+|+.+.|.||++. 
T Consensus      1258 ~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~i---v~~~~yGs~lTal~VH~hapiiAsGs~q~ikIy~~~- 1333 (1387)
T KOG1517|consen 1258 PIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTI---VAHWEYGSALTALTVHEHAPIIASGSAQLIKIYSLS- 1333 (1387)
T ss_pred             cceeEEeecCCCcceeeeccCCeEEEEecccCccccccee---eeccccCccceeeeeccCCCeeeecCcceEEEEecC-
Confidence             99999998774 499999999999999998432221111   112211234899999999999999877999999997 


Q ss_pred             ceEEEEe------eCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310          967 LTCLKQW------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       967 ~~~~~~~------~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      |+.+..+      .....+.+.+++|.|---+||+|+.|.+|.||..+...
T Consensus      1334 G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1334 GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred             hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence            4444332      12225678999999999999999999999999887654

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.66  E-value=1.1e-13  Score=151.02  Aligned_cols=322  Identities=13%  Similarity=0.130  Sum_probs=201.1

Q ss_pred             EEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCc
Q 001310          501 FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS  580 (1103)
Q Consensus       501 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~  580 (1103)
                      ++++-..+|.|.+.|..+.+....+......-..+.|+|||+++++++.    ++.|.++|+.+++.++.+....    .
T Consensus         8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~----~   79 (369)
T PF02239_consen    8 FYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG----N   79 (369)
T ss_dssp             EEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS----E
T ss_pred             EEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC----C
Confidence            3456667899999999998888888766555556789999999999865    5679999999999999987643    5


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCC-----CCCCceEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001310          581 VSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN-ENRIKILETPE  653 (1103)
Q Consensus       581 v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~~  653 (1103)
                      ...+++++||++++++. .++.+.++|.++.+.++.+.....     .+.+..+..+|....+++.-. .+.|.+.|...
T Consensus        80 ~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   80 PRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             cceEEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            78899999999998865 789999999999999988765421     234556777888775555544 57777777665


Q ss_pred             CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccc
Q 001310          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  733 (1103)
Q Consensus       654 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  733 (1103)
                      ...+.....                                                                     ..
T Consensus       160 ~~~~~~~~i---------------------------------------------------------------------~~  170 (369)
T PF02239_consen  160 PKNLKVTTI---------------------------------------------------------------------KV  170 (369)
T ss_dssp             SSCEEEEEE---------------------------------------------------------------------E-
T ss_pred             ccccceeee---------------------------------------------------------------------cc
Confidence            422211000                                                                     01


Q ss_pred             cccEEEEEEecCCcEEEEee-cCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEE----
Q 001310          734 ANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF----  808 (1103)
Q Consensus       734 ~~~i~~~~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l----  808 (1103)
                      ........|+|++++++++. .+..+-++|....+.             +.....|...         |..+...+    
T Consensus       171 g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-------------v~~i~~g~~p---------~~~~~~~~php~  228 (369)
T PF02239_consen  171 GRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-------------VALIDTGKKP---------HPGPGANFPHPG  228 (369)
T ss_dssp             -TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-------------EEEEE-SSSB---------EETTEEEEEETT
T ss_pred             cccccccccCcccceeeecccccceeEEEeeccceE-------------EEEeeccccc---------cccccccccCCC
Confidence            12234567888888876653 456777777655432             1111112111         22222211    


Q ss_pred             -----EEecCCCEEE-EEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEE----eCCCeEEEEEcCCcee
Q 001310          809 -----ALSKNDAYLF-SASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG----MDDSTILIYNARSSEV  878 (1103)
Q Consensus       809 -----~~s~d~~~l~-~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg----~~dg~v~iwd~~~~~~  878 (1103)
                           +....+...+ ..+.+.+.+||..+++.++++...... .-+..+| +++++.+.    ...++|.++|..+.+.
T Consensus       229 ~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~  306 (369)
T PF02239_consen  229 FGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHP-DSRYVWVDTFLNPDADTVQVIDKKTLKV  306 (369)
T ss_dssp             TEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--T-T-SEEEEE-TT-SSHT-EEEEECCGTEE
T ss_pred             cceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCC-CCccEEeeccCCCCCceEEEEECcCcce
Confidence                 1222333332 223456678999999999999877666 7888899 88899887    4558999999999988


Q ss_pred             EEEeccCC-CCEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCceeee
Q 001310          879 ISKLEGHS-KRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTC  923 (1103)
Q Consensus       879 ~~~l~~h~-~~V~~l~~s~dg~~l~s~s~--dg~I~iwd~~~~~~~~~  923 (1103)
                      +..+.... ..+..+.|++||+.+..+..  ++.|.++|..+.+....
T Consensus       307 ~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~  354 (369)
T PF02239_consen  307 VKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR  354 (369)
T ss_dssp             EE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred             eEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence            87776332 35889999999997665544  33699999999776553

...

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=99.66  E-value=1.7e-14  Score=161.79  Aligned_cols=298  Identities=14%  Similarity=0.192  Sum_probs=208.2

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--CC
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DG  408 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg  408 (1103)
                      .+.......+.|+|-.. .++++.....|+|||.+.++.+..+.-                -......|+.+.+-.  |.
T Consensus      1061 ~~n~~~pk~~~~hpf~p-~i~~ad~r~~i~vwd~e~~~~l~~F~n----------------~~~~~t~Vs~l~liNe~D~ 1123 (1387)
T KOG1517|consen 1061 TGNNQPPKTLKFHPFEP-QIAAADDRERIRVWDWEKGRLLNGFDN----------------GAFPDTRVSDLELINEQDD 1123 (1387)
T ss_pred             hcCCCCCceeeecCCCc-eeEEcCCcceEEEEecccCceeccccC----------------CCCCCCccceeeeecccch
Confidence            34444677889999887 577777678999999999988754221                112346788888876  67


Q ss_pred             CEEEEEeCCCeEEEEEec-CC-C---ccccceEecccc----ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          409 SLLGVAYSKHIVQLYAYH-GG-S---DARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~-~~-~---~~~~~~~l~~h~----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      .+|++|+.||.|+||+-- ++ +   .+.....+.++.    +.=.-+.|-....  .|+++|.-..|+|||.....+..
T Consensus      1124 aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G--~Ll~tGd~r~IRIWDa~~E~~~~ 1201 (1387)
T KOG1517|consen 1124 ALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSG--HLLVTGDVRSIRIWDAHKEQVVA 1201 (1387)
T ss_pred             hheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCC--eEEecCCeeEEEEEecccceeEe
Confidence            789999999999999643 22 1   111111122211    1113456766655  56777768899999999888887


Q ss_pred             Eee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecCCCcc--EEEEEEccCCCE-EEEEecCCC
Q 001310          480 SFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLG--CTRMAYSANGRR-LFSCGTSKE  552 (1103)
Q Consensus       480 ~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~--i~~~~~s~dg~~-l~~~~~~~~  552 (1103)
                      .+. +....|+++.-+-. .|..+++|..||.|++||.+....   ....+.|...  |..+.+.+.|-. |++++.   
T Consensus      1202 diP~~s~t~vTaLS~~~~-~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~--- 1277 (1387)
T KOG1517|consen 1202 DIPYGSSTLVTALSADLV-HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ--- 1277 (1387)
T ss_pred             ecccCCCccceeeccccc-CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc---
Confidence            764 34456777765433 478999999999999999876543   3455666665  999999987766 888876   


Q ss_pred             CceeEEEEeCCCCeeEEEE--ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----CCCCCC
Q 001310          553 GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----GGLPEN  625 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v  625 (1103)
                       +|.|++||++.......+  ..|..-++.++++..++....+++|+. +.|+||++.. +.+..+...     .....+
T Consensus      1278 -~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G-~~l~~~k~n~~F~~q~~gs~ 1354 (1387)
T KOG1517|consen 1278 -DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSG-EQLNIIKYNPGFMGQRIGSV 1354 (1387)
T ss_pred             -CCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecCh-hhhcccccCcccccCcCCCc
Confidence             455999999875222111  111101134899999999999999998 9999999864 333333221     123457


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          626 PRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      .|++|+|---++|+|+.|..|.||.....
T Consensus      1355 scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1355 SCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred             ceeeecchhHhhhhccCCceEEEeecCCc
Confidence            89999999999999999999999987654

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.66  E-value=1e-14  Score=165.79  Aligned_cols=235  Identities=13%  Similarity=0.127  Sum_probs=162.2

Q ss_pred             CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccc
Q 001310          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDAR  432 (1103)
Q Consensus       356 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~  432 (1103)
                      +..|.+||...... ..                   +..|...+.+.+|||||++||.++.+   ..|++||+.+++...
T Consensus       183 ~~~i~i~d~dg~~~-~~-------------------lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~  242 (429)
T PRK01742        183 PYEVRVADYDGFNQ-FI-------------------VNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV  242 (429)
T ss_pred             eEEEEEECCCCCCc-eE-------------------eccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence            46899999865542 21                   55688899999999999999988643   479999998875321


Q ss_pred             cceEeccccccEEEEEEecCCCceEEEE-EcCCCceEEE--eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEE-CC
Q 001310          433 QQLEIDAHVGNVNDLAFSAPCKQISVIT-CGDDKTIKVW--DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VD  508 (1103)
Q Consensus       433 ~~~~l~~h~~~v~~~~~s~d~~~~~l~s-~~~d~~i~iw--d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~d  508 (1103)
                       ...+.+|   ...++|+|||+.  |+. .+.+|.+.||  |+.++. +..+..+...+....|++  ||..|+..+ .+
T Consensus       243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~  313 (429)
T PRK01742        243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGT-PSQLTSGAGNNTEPSWSP--DGQSILFTSDRS  313 (429)
T ss_pred             -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCC-eEeeccCCCCcCCEEECC--CCCEEEEEECCC
Confidence             2223344   346899999994  554 4567766555  665655 455666777777778854  677666554 57


Q ss_pred             CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       509 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      |...+|+++..........+..  ....|+|||++++..+.+     .+.+||+.+++........     ....+.|+|
T Consensus       314 g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-----~i~~~Dl~~g~~~~lt~~~-----~~~~~~~sP  381 (429)
T PRK01742        314 GSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-----NVVKQDLTSGSTEVLSSTF-----LDESPSISP  381 (429)
T ss_pred             CCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-----CEEEEECCCCCeEEecCCC-----CCCCceECC
Confidence            8889998765433222222222  457899999999887642     2777999988765333222     234577999


Q ss_pred             CCCEEEEEeCCCcEEEEEC--CCCeeEEEEcCCCCCCCCceEEEecC
Q 001310          589 AKDQILAAGDDHVIKIWDM--NKVQLLTTIDAGGGLPENPRICFNKN  633 (1103)
Q Consensus       589 ~~~~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1103)
                      +|++++.++.++.+.+|.+  .+|.....+..+.  ..+...+|+|-
T Consensus       382 dG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~  426 (429)
T PRK01742        382 NGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY  426 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence            9999999999998888875  3577777776543  34778899874

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.65  E-value=3.9e-14  Score=161.73  Aligned_cols=257  Identities=13%  Similarity=0.104  Sum_probs=182.1

Q ss_pred             ccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCC----CccccceEeccccccEEEEEEecCCCceEEEEEcCCCc
Q 001310          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT  466 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~  466 (1103)
                      +..|+..|..++.+++ +.++++|+.||+|++|+...-    ...+...++..-..++.++.+.+.+.  .+|.++.||.
T Consensus      1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred             hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence            6779999999998875 499999999999999998642    12222223333466899999999999  6888899999


Q ss_pred             eEEEeCCCC--c-----eeEEeecC-CCceEEE-EeeecCCccEEEEEECCCeEEEEEcCCCCeeEE--ecCCCccEEEE
Q 001310          467 IKVWDAVTG--S-----RTYSFEGH-GAPVYSL-CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRM  535 (1103)
Q Consensus       467 i~iwd~~~~--~-----~~~~~~~~-~~~v~~~-~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~  535 (1103)
                      |++.+++.-  +     +.+....+ .+.+.++ ++........++.+..-+.|..||.........  .....+.|+++
T Consensus      1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred             EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence            999998762  1     11222222 2344444 333322234788888999999999987766553  34455689999


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC---CCEEEEEe--CCCcEEEEECCCC
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAG--DDHVIKIWDMNKV  610 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~--~dg~i~iwd~~~~  610 (1103)
                      +.+|-+.+++.|+.    .|.+.+||++=+..+.......  ..++..+..+|-   ....++++  ..+.|.+|++.+|
T Consensus      1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~--~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPA--RAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred             EecCCceEEEEecC----CceEEEEEeecCceeecccCcc--cCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence            99999999999976    6679999999988888776544  366777766654   34555543  5788999999999


Q ss_pred             eeEEEEcCCCCC-----------------CCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310          611 QLLTTIDAGGGL-----------------PENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1103)
Q Consensus       611 ~~~~~~~~~~~~-----------------~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~  656 (1103)
                      .+...+......                 ......++...+..+.+|+.|..|+.||......
T Consensus      1276 ~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~ 1338 (1431)
T KOG1240|consen 1276 LRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEI 1338 (1431)
T ss_pred             cceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCccc
Confidence            777666433110                 0112233334466889999999999999886543

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.65  E-value=2.5e-14  Score=159.68  Aligned_cols=250  Identities=17%  Similarity=0.168  Sum_probs=183.2

Q ss_pred             CCccEEEEEECC-CCCEEEEEeCCCeEEEEEecCCCcc--cc-ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          395 PGVSVNRVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDA--RQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       395 h~~~V~~~~~sp-dg~~las~~~d~~i~iwd~~~~~~~--~~-~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      -...|.|+.|+| +..+||.|..+|.|.+||+..+...  .. ......|..+++.+.|..+-...-+++++.||.|+.|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            467999999999 6778888899999999999887641  11 1123468899999999765443359999999999999


Q ss_pred             eCCCCce------eEEee------cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--------eEEecCCCc
Q 001310          471 DAVTGSR------TYSFE------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--------RVDYDAPGL  530 (1103)
Q Consensus       471 d~~~~~~------~~~~~------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--------~~~~~~~~~  530 (1103)
                      +++.-..      .....      .-...++++.|.+. +-..++.|+.+|.|..-+....+.        ...+..|.+
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~-~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g  399 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT-DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG  399 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccC-CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence            8764322      11111      12345788888765 446789999999988743332221        225566788


Q ss_pred             cEEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 001310          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN  608 (1103)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~  608 (1103)
                      +|.++.++|-+..++..+.    +-+++||... ...++..+..+.   ..+.+++|||-...+ +++..||.|.+||+.
T Consensus       400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~---~~v~~vaWSptrpavF~~~d~~G~l~iWDLl  472 (555)
T KOG1587|consen  400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSP---DYVTDVAWSPTRPAVFATVDGDGNLDIWDLL  472 (555)
T ss_pred             ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhcc---ceeeeeEEcCcCceEEEEEcCCCceehhhhh
Confidence            9999999998877766654    6679999987 556666666655   679999999987554 557789999999997


Q ss_pred             CCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          609 KVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       609 ~~~--~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      ...  ++.+....  ....+.+.|+++|+.|++|...|.+.+|++...
T Consensus       473 ~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~  518 (555)
T KOG1587|consen  473 QDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES  518 (555)
T ss_pred             ccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence            543  33333333  345678889999999999999999999998744

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.64  E-value=4.6e-11  Score=123.03  Aligned_cols=240  Identities=12%  Similarity=0.106  Sum_probs=151.8

Q ss_pred             ccccEEEEEEecCCcEEEEeecCc-eEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe
Q 001310          733 KANKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  811 (1103)
                      +...|.-..+..+++.++.+..|| .+-|++......                      -.. .    +.-+.|.++..+
T Consensus       358 ~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~----------------------kr~-e----~~lg~I~av~vs  410 (668)
T COG4946         358 KKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV----------------------KRI-E----KDLGNIEAVKVS  410 (668)
T ss_pred             CCCceEEEEEccCCcceEEeccCCceEEEEecCCceE----------------------EEe-e----CCccceEEEEEc
Confidence            334466666666777788888887 677776544321                      111 0    256789999999


Q ss_pred             cCCCEEEEEcC-CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEEeccCC
Q 001310          812 KNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHS  886 (1103)
Q Consensus       812 ~d~~~l~~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~  886 (1103)
                      +||++++++.+ ..+.+.|+.++.....-+...+-|+..+|+| +++++|.+--+|    .|++||+.+++....-. ..
T Consensus       411 ~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~t  488 (668)
T COG4946         411 PDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PT  488 (668)
T ss_pred             CCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCcceeeeeEEEEecCCCeEEEecC-Cc
Confidence            99999999986 7799999999987666666778899999999 899999987776    78999999887654433 23


Q ss_pred             CCEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCceeeeeeeecCCCcccCC-----------------------
Q 001310          887 KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA-----------------------  936 (1103)
Q Consensus       887 ~~V~~l~~s~dg~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~-----------------------  936 (1103)
                      +.=.+-+|.||+++|..-+.       |..+.=+....  ..+..++....+.....                       
T Consensus       489 a~DfsPaFD~d~ryLYfLs~RsLdPs~Drv~fnf~f~~--vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~  566 (668)
T COG4946         489 AYDFSPAFDPDGRYLYFLSARSLDPSNDRVIFNFSFQR--VSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRV  566 (668)
T ss_pred             ccccCcccCCCCcEEEEEeccccCCCCCeeEEEEEEee--eccceEEEecCCCCChhhcCchhcCccccceehhhhcccc
Confidence            33356789999998876553       44333222221  11111111111111000                       


Q ss_pred             -------CCceEEEEcCCCCEEEEE---------------eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEE
Q 001310          937 -------PSETHIQFHKDQTRFLLV---------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1103)
Q Consensus       937 -------~~v~~l~fs~dg~~l~~~---------------~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1103)
                             +.-.+++=-.+|+.+.-+               .-|.+.+||+++.+.-.     -...++++..|+|++.+.
T Consensus       567 eP~pVee~dY~sI~~lk~~killfs~pi~Gefs~yy~gq~~kG~l~~ydletkk~~e-----~k~nvss~rlS~D~s~il  641 (668)
T COG4946         567 EPFPVEEGDYRSIAGLKNGKILLFSYPIHGEFSQYYWGQPEKGRLEKYDLETKKVEE-----YKDNVSSFRLSSDGSKIL  641 (668)
T ss_pred             cccccCccceeEeeecCCCeEEEEEeeccchhhhhhcCCCccceEEEEecchhhHHH-----HhcccceEEEcCCCCEEE
Confidence                   011222222233222211               12445556655433211     145789999999999988


Q ss_pred             EEecCCcEEEEeCCC
Q 001310          995 TSFVDGTLSIHEASN 1009 (1103)
Q Consensus       995 t~~~dg~v~vWd~~~ 1009 (1103)
                      . -.||.++++|++.
T Consensus       642 v-k~d~kl~~f~vek  655 (668)
T COG4946         642 V-KLDGKLRLFDVEK  655 (668)
T ss_pred             E-EeCCeEEEEeccc
Confidence            8 7899999999986

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.63  E-value=2.3e-12  Score=140.90  Aligned_cols=335  Identities=15%  Similarity=0.180  Sum_probs=202.2

Q ss_pred             ceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEE
Q 001310          455 QISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTR  534 (1103)
Q Consensus       455 ~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~  534 (1103)
                      .+++++-..++.|.+.|..+.+.+.++......-..+.+  ++|++++++++.||.|.++|+.+.+....+.... ...+
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~--s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~   82 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKF--SPDGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG   82 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE---TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEe--cCCCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence            346677888999999999999999999866554344555  5688899999999999999999999887776544 5678


Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc----cCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001310          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL----QHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK  609 (1103)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  609 (1103)
                      +++|+||++++++...   .+.+.++|.++.+.++.+.....    ....+.++..++....++.. -+.+.|.+.|...
T Consensus        83 i~~s~DG~~~~v~n~~---~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d  159 (369)
T PF02239_consen   83 IAVSPDGKYVYVANYE---PGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD  159 (369)
T ss_dssp             EEE--TTTEEEEEEEE---TTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred             EEEcCCCCEEEEEecC---CCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence            9999999999987642   55699999999999988765431    12467788888888855554 4558888889877


Q ss_pred             CeeEE--EEcCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCC
Q 001310          610 VQLLT--TIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1103)
Q Consensus       610 ~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  686 (1103)
                      .+.+.  .+...   .......|+|++++++++ ..++.|-++|..+++.+..+.....+-                   
T Consensus       160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~-------------------  217 (369)
T PF02239_consen  160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPH-------------------  217 (369)
T ss_dssp             SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBE-------------------
T ss_pred             ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceEEEEeecccccc-------------------
Confidence            65443  33322   234678999999987765 456789999998876554332110000                   


Q ss_pred             ceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCC
Q 001310          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1103)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~  766 (1103)
                                            ..+..             .++.. ..+.+..  ....+...++.-...          
T Consensus       218 ----------------------~~~~~-------------~~php-~~g~vw~--~~~~~~~~~~~ig~~----------  249 (369)
T PF02239_consen  218 ----------------------PGPGA-------------NFPHP-GFGPVWA--TSGLGYFAIPLIGTD----------  249 (369)
T ss_dssp             ----------------------ETTEE-------------EEEET-TTEEEEE--EEBSSSSEEEEEE------------
T ss_pred             ----------------------ccccc-------------cccCC-CcceEEe--eccccceecccccCC----------
Confidence                                  00000             00000 0001100  011111111111111          


Q ss_pred             ccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE---c-C-CeEEEEEcCCceeeEEecC
Q 001310          767 DLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA---S-G-GVISLYIVMTFKTILTIMP  841 (1103)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~---~-d-g~i~iwd~~~~~~~~~~~~  841 (1103)
                                  .+.+|+....+.+...+..    ..+ .-+..+||++++.+.   + + ++|.++|.++.+.+.++..
T Consensus       250 ------------~v~v~d~~~wkvv~~I~~~----G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~  312 (369)
T PF02239_consen  250 ------------PVSVHDDYAWKVVKTIPTQ----GGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITP  312 (369)
T ss_dssp             ------------TTT-STTTBTSEEEEEE-S----SSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHH
T ss_pred             ------------ccccchhhcCeEEEEEECC----CCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEec
Confidence                        2334555555545555442    233 667889999999998   2 3 7899999999988888753


Q ss_pred             -CCCCeeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCceeEEEec
Q 001310          842 -PSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEVISKLE  883 (1103)
Q Consensus       842 -~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~~~~~~~~l~  883 (1103)
                       ....+..+.|++ +|+.+.....+  |.|.+||..+.+.+.++.
T Consensus       313 ~~~~~~~h~ef~~-dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~  356 (369)
T PF02239_consen  313 GPGKRVVHMEFNP-DGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP  356 (369)
T ss_dssp             HHT--EEEEEE-T-TSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred             cCCCcEeccEECC-CCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence             223599999999 77755554433  379999999999988876

...

>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]

Probab=99.63  E-value=3.2e-14  Score=136.93  Aligned_cols=251  Identities=12%  Similarity=0.229  Sum_probs=178.1

Q ss_pred             ccCCcCceEEEecCCCc----eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          331 IEGSSSPMSMDFHPVQH----TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~----~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      ..|.-+++.+.|.||.+    .+||+.+  ..+++|.+...+....          +...+....-..+..++++..|..
T Consensus        93 fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~----------~~~~L~~~kns~~~aPlTSFDWne  160 (364)
T KOG0290|consen   93 FDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVE----------LQSVLNNNKNSEFCAPLTSFDWNE  160 (364)
T ss_pred             CCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCcee----------hhhhhccCcccccCCccccccccc
Confidence            37888999999999873    3677654  5899999874322111          001111111334678999999998


Q ss_pred             -CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe---e
Q 001310          407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E  482 (1103)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~  482 (1103)
                       |-++|.+++-|.+..|||+++|........+-.|...|..++|..++.+ .+++.|.||.||++|++.-+.-..+   .
T Consensus       161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p  239 (364)
T KOG0290|consen  161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP  239 (364)
T ss_pred             CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence             8899999999999999999998442233457799999999999998877 8999999999999999876543333   2


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCC-eEEEEEcCCCCe-eEEecCCCccEEEEEEccCCC-EEEEEecCCCCceeEEE
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDG-KIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg-~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~i  559 (1103)
                      ....+...++|+.. |-.++++-..|. .|.+.|++.... ...+..|...|+.++|.|... .+.+++.    +.+..+
T Consensus       240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali  314 (364)
T KOG0290|consen  240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI  314 (364)
T ss_pred             CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence            22456777787643 456777766654 588899987654 558899999999999999654 5666653    777999


Q ss_pred             EeCCCCee------EEEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEE
Q 001310          560 WNESEGAI------KRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKI  604 (1103)
Q Consensus       560 wd~~~~~~------~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~i  604 (1103)
                      ||+.+.-.      +..+. .   .+.|+.+.|++. ..+++.+.. +++.+
T Consensus       315 WDl~q~~~~~~~dPilay~-a---~~EVNqi~Ws~~~~Dwiai~~~-kklei  361 (364)
T KOG0290|consen  315 WDLQQMPRENGEDPILAYT-A---GGEVNQIQWSSSQPDWIAICFG-KKLEI  361 (364)
T ss_pred             EecccccccCCCCchhhhh-c---cceeeeeeecccCCCEEEEEec-CeeeE
Confidence            99975322      11222 1   367999999965 456666553 34433

>KOG1334 consensus WD40 repeat protein [General function prediction only]

Probab=99.63  E-value=3e-15  Score=154.15  Aligned_cols=296  Identities=14%  Similarity=0.131  Sum_probs=224.1

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      |.+|.+.|..|.|...|..|++|+.|..|.+||+..+.....  -..||...|....|-|......+++++.||.+++=.
T Consensus       138 L~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~--f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  138 LNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLS--FESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             ccCCCCccceeeecccCceeeccCccceEEeehhhccCcccc--cccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            788999999999999999999999999999999998865443  235899999988898865444799999999999876


Q ss_pred             CC-CCcee--EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCc---cEEEEEEccCCC
Q 001310          472 AV-TGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGL---GCTRMAYSANGR  542 (1103)
Q Consensus       472 ~~-~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~---~i~~~~~s~dg~  542 (1103)
                      +. ++.+.  ..+..|.++|.-++..|. .-..+.+++.|+.+.-.|++.......+.   .+..   ....++..|...
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~-sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt  294 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPD-SPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNT  294 (559)
T ss_pred             eccccceecceecccccCccceeeecCC-CCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCc
Confidence            54 44433  455679999999988664 33578999999999999988765443222   1222   467888999776


Q ss_pred             -EEEEEecCCCCceeEEEEeCCCCee------EEEEeccc---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--C
Q 001310          543 -RLFSCGTSKEGESFLVEWNESEGAI------KRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--V  610 (1103)
Q Consensus       543 -~l~~~~~~~~~~~~i~iwd~~~~~~------~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~  610 (1103)
                       .+++++.    +.++++||.+.-..      +..+..+.   ...-.|++++++.++.-+++...|-.|+++...-  |
T Consensus       295 ~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G  370 (559)
T KOG1334|consen  295 NEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDG  370 (559)
T ss_pred             cccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccC
Confidence             4555554    66789998764321      22222221   1124689999998888888888899999995432  2


Q ss_pred             ----------eeEEE-EcCCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310          611 ----------QLLTT-IDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1103)
Q Consensus       611 ----------~~~~~-~~~~~~~~~v~~v~~-s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  678 (1103)
                                ..+.. +.+|.....|..+-| -|...++++|++-|.|.||+-.+++.+..+.+...-|+|+.-.     
T Consensus       371 ~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpH-----  445 (559)
T KOG1334|consen  371 SEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPH-----  445 (559)
T ss_pred             CCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCC-----
Confidence                      12223 566766666778875 5788999999999999999999999999998888888888776     


Q ss_pred             eeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                                       |--..|++.+-|..|+||...
T Consensus       446 -----------------P~~PvLAsSGid~DVKIWTP~  466 (559)
T KOG1334|consen  446 -----------------PHLPVLASSGIDHDVKIWTPL  466 (559)
T ss_pred             -----------------CCCchhhccCCccceeeecCC
Confidence                             445668899999999999864

>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.62  E-value=5.9e-15  Score=150.31  Aligned_cols=197  Identities=22%  Similarity=0.192  Sum_probs=151.3

Q ss_pred             eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeee
Q 001310          847 TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL  926 (1103)
Q Consensus       847 ~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~  926 (1103)
                      ..++|+. +|..|++|+.||++|||+..+...+.....|.+.|.++.|||||++|++.+.| ..+||++.+|-....   
T Consensus       148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~---  222 (398)
T KOG0771|consen  148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALAR---  222 (398)
T ss_pred             eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhh---
Confidence            7899999 89999999999999999999888888888899999999999999999999999 799999999842221   


Q ss_pred             ecCCCcccCCCCceEEEEcCCC---CEEEE--E-eCCeEEEEECCCceE-----EEEeeCCCCcCeEEEEEccCCCEEEE
Q 001310          927 QTPDGVMTLAPSETHIQFHKDQ---TRFLL--V-HETHLAIYEAEELTC-----LKQWFPISSVPISQATFSCDCRMVFT  995 (1103)
Q Consensus       927 ~~~~~~~~~~~~v~~l~fs~dg---~~l~~--~-~d~~v~iwd~~~~~~-----~~~~~~~h~~~v~~l~fs~dg~~l~t  995 (1103)
                      ..+.+..   .....+.|+.|+   .+.+.  . .-+.|..||+.....     ..+.. .....|++++.|+||+++|.
T Consensus       223 ~t~~~k~---~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~Al  298 (398)
T KOG0771|consen  223 KTPFSKD---EMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLAL  298 (398)
T ss_pred             cCCcccc---hhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEE
Confidence            1111111   257788999888   33332  2 334566666543221     11111 12458999999999999999


Q ss_pred             EecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310          996 SFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus       996 ~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
                      |+.||.|.|++..+.+...-+.                  ..|...|.  .+.|+|+ .+.+++.+.|.+..|..+..
T Consensus       299 GT~dGsVai~~~~~lq~~~~vk------------------~aH~~~VT--~ltF~Pd-sr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  299 GTMDGSVAIYDAKSLQRLQYVK------------------EAHLGFVT--GLTFSPD-SRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             eccCCcEEEEEeceeeeeEeeh------------------hhheeeee--eEEEcCC-cCcccccccCCceeEEEEee
Confidence            9999999999999888764444                  13666564  7899998 88899999999999998854

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.62  E-value=7.8e-16  Score=168.44  Aligned_cols=343  Identities=17%  Similarity=0.195  Sum_probs=218.4

Q ss_pred             HHHHHHHHHHHHHHhcCCCCCCCCCCCCccccccCCCCCCcccCCCCCCCCCCCCCCCCCCccccCCCCCcCcccccccc
Q 001310          171 RLRRLINQSLNWQHVHCANPQPNPDINTLFVDHVCQLQETDFSGQSSESNALPPQTTQSPSSWNFSSSMLTDSAVSFVAL  250 (1103)
Q Consensus       171 rL~~Ll~qa~~~q~~~c~~~~~~~~~~sL~~d~~c~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  250 (1103)
                      -|..|+.|++++|+.+|+.|.++++++|||.+|+|++|               .+..+.+.++.++..    ..+..   
T Consensus      1014 sLdSIVt~Ylr~QH~~CknPVtTcPPfSLf~pH~CPEp---------------k~~~~ap~N~t~Rl~----~rel~--- 1071 (1516)
T KOG1832|consen 1014 SLDSIVTQYLRHQHRQCKNPVTTCPPFSLFHPHVCPEP---------------KRLLEAPLNMTGRLG----TRELQ--- 1071 (1516)
T ss_pred             cHHHHHHHHHHHHHHhhcCCcccCCChhhcCCccCCCh---------------HHHhhcchhhhhccc----chhhc---
Confidence            49999999999999999999999999999999999983               222222222111110    00000   


Q ss_pred             cCCCCCCcceeccCCCCCCccccCCccccccccCCcccccCcccCCCCCCCCCcchhhccccccCCccccCCccceeEec
Q 001310          251 SLSDPTNKAVTMDRPEDSDILSEKSPVRILNEQASTVTYPGVSLKNIPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTL  330 (1103)
Q Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~s~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l  330 (1103)
                                                           .+-.-.||.    .-+...+...|             ...+++
T Consensus      1072 -------------------------------------~~y~gV~g~----~~dr~~IFSRF-------------r~w~~f 1097 (1516)
T KOG1832|consen 1072 -------------------------------------SFYSGVHGN----RRDRQFIFSRF-------------RSWRSF 1097 (1516)
T ss_pred             -------------------------------------CcccccccC----cccchhhHhhc-------------ccchhh
Confidence                                                 000000000    00011111112             123667


Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~  410 (1103)
                      +.|...-+|++||-+.+ .|++|+..|.|+++++.+|.....                   ..+|..+|+.+.-|.||..
T Consensus      1098 rd~~~~fTc~afs~~~~-hL~vG~~~Geik~~nv~sG~~e~s-------------------~ncH~SavT~vePs~dgs~ 1157 (1516)
T KOG1832|consen 1098 RDETALFTCIAFSGGTN-HLAVGSHAGEIKIFNVSSGSMEES-------------------VNCHQSAVTLVEPSVDGST 1157 (1516)
T ss_pred             hccccceeeEEeecCCc-eEEeeeccceEEEEEccCcccccc-------------------ccccccccccccccCCcce
Confidence            88989999999999988 699999999999999999987765                   6679999999999999998


Q ss_pred             EEEEeCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ec---C
Q 001310          411 LGVAYSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG---H  484 (1103)
Q Consensus       411 las~~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~---~  484 (1103)
                      +++.+.-.  ...+|++.+-  ....+++.    .-.++.|+...+. .++ |..-..+.+||++|+..+.++ .+   .
T Consensus      1158 ~Ltsss~S~PlsaLW~~~s~--~~~~Hsf~----ed~~vkFsn~~q~-r~~-gt~~d~a~~YDvqT~~~l~tylt~~~~~ 1229 (1516)
T KOG1832|consen 1158 QLTSSSSSSPLSALWDASST--GGPRHSFD----EDKAVKFSNSLQF-RAL-GTEADDALLYDVQTCSPLQTYLTDTVTS 1229 (1516)
T ss_pred             eeeeccccCchHHHhccccc--cCcccccc----ccceeehhhhHHH-HHh-cccccceEEEecccCcHHHHhcCcchhh
Confidence            88765433  4789999762  22222332    2457889876553 333 333346889999999888763 22   1


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1103)
                      ...-+...|+|  ...+++   .||  .+||.+..+.+..+.... ....-.|+|.|..++..+         .|||+++
T Consensus      1230 ~y~~n~a~FsP--~D~LIl---ndG--vLWDvR~~~aIh~FD~ft-~~~~G~FHP~g~eVIINS---------EIwD~RT 1292 (1516)
T KOG1832|consen 1230 SYSNNLAHFSP--CDTLIL---NDG--VLWDVRIPEAIHRFDQFT-DYGGGGFHPSGNEVIINS---------EIWDMRT 1292 (1516)
T ss_pred             hhhccccccCC--CcceEe---eCc--eeeeeccHHHHhhhhhhe-ecccccccCCCceEEeec---------hhhhhHH
Confidence            11224445644  334444   234  469988776655443322 112336999999998864         4799999


Q ss_pred             CeeEEEEecccccCCceEEEEEcCCCCEEEEEe--CC---------------CcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--DD---------------HVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      .+.++......     -..+.|+..|+.++..-  .|               ...+-++..+...+.++....   .+..
T Consensus      1293 F~lLh~VP~Ld-----qc~VtFNstG~VmYa~~~~~d~~sdvh~~r~k~p~fSSFRTf~a~dYs~iaTi~v~R---~~~D 1364 (1516)
T KOG1832|consen 1293 FKLLHSVPSLD-----QCAVTFNSTGDVMYAMLNIEDVMSDVHTRRVKHPLFSSFRTFDAIDYSDIATIPVDR---CLLD 1364 (1516)
T ss_pred             HHHHhcCcccc-----ceEEEeccCccchhhhhhhhhhhhhhcccccccchhhhhccccccccccceeeeccc---chhh
Confidence            98887776544     45677888887665432  00               124455555556666665542   3566


Q ss_pred             EEEecCCCEEEEEEC
Q 001310          628 ICFNKNGTLLAVIAN  642 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~  642 (1103)
                      ++-+|...++.+...
T Consensus      1365 lct~~~D~~l~vIe~ 1379 (1516)
T KOG1832|consen 1365 LCTEPTDSFLGVIEM 1379 (1516)
T ss_pred             hhcCCccceEEEEec
Confidence            666776666665543

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.61  E-value=1.2e-11  Score=140.32  Aligned_cols=196  Identities=15%  Similarity=0.176  Sum_probs=152.3

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc-----cEEEEEECCCCC
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS  409 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~~~~spdg~  409 (1103)
                      +.|....+.-+.+ .++.++.++.+.|||...+......                    .+..     ...-+.++++.-
T Consensus        88 ~wi~g~~l~~e~k-~i~l~~~~ns~~i~d~~~~~~~~~i--------------------~~~er~~l~~~~~~g~s~~~~  146 (967)
T KOG0974|consen   88 DWIFGAKLFEENK-KIALVTSRNSLLIRDSKNSSVLSKI--------------------QSDERCTLYSSLIIGDSAEEL  146 (967)
T ss_pred             ccccccchhhhcc-eEEEEEcCceEEEEecccCceehhc--------------------CCCceEEEEeEEEEeccCcEE
Confidence            3444455566666 5788888899999999877655421                    1222     223355788888


Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE-EeecCCCce
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPV  488 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v  488 (1103)
                      ++++|+.-+.|.+|+..... .. . .+.||.+.|.++.|+.||+  ++++.|.|.++|+|++++++... ..-+|...|
T Consensus       147 ~i~~gsv~~~iivW~~~~dn-~p-~-~l~GHeG~iF~i~~s~dg~--~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRv  221 (967)
T KOG0974|consen  147 YIASGSVFGEIIVWKPHEDN-KP-I-RLKGHEGSIFSIVTSLDGR--YIASVSDDRSIRLWPIDSREVLGCTGFGHSARV  221 (967)
T ss_pred             EEEeccccccEEEEeccccC-Cc-c-eecccCCceEEEEEccCCc--EEEEEecCcceeeeecccccccCccccccccee
Confidence            99999999999999998332 11 1 5789999999999999999  89999999999999999998876 667899999


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      ..+++.+.    .+++++.|-+.++|+.+..+.. .+..| ...+..++..++...+++++.    |+.+++|+....
T Consensus       222 w~~~~~~n----~i~t~gedctcrvW~~~~~~l~-~y~~h~g~~iw~~~~~~~~~~~vT~g~----Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  222 WACCFLPN----RIITVGEDCTCRVWGVNGTQLE-VYDEHSGKGIWKIAVPIGVIIKVTGGN----DSTLKLWDLNGR  290 (967)
T ss_pred             EEEEeccc----eeEEeccceEEEEEecccceeh-hhhhhhhcceeEEEEcCCceEEEeecc----Ccchhhhhhhcc
Confidence            99999753    8999999999999976654444 44444 347899999998888888876    566999987643

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.60  E-value=5.4e-13  Score=132.60  Aligned_cols=288  Identities=16%  Similarity=0.157  Sum_probs=189.4

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC-CCEEEEE
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD-GSLLGVA  414 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd-g~~las~  414 (1103)
                      .+..++|++--- -+|++..|-.|+|||-.... ...                  +-......|+|++|-|. ++-|++|
T Consensus       100 dlr~~aWhqH~~-~fava~nddvVriy~ksst~-pt~------------------Lks~sQrnvtclawRPlsaselavg  159 (445)
T KOG2139|consen  100 DLRGVAWHQHII-AFAVATNDDVVRIYDKSSTC-PTK------------------LKSVSQRNVTCLAWRPLSASELAVG  159 (445)
T ss_pred             ceeeEeechhhh-hhhhhccCcEEEEeccCCCC-Cce------------------ecchhhcceeEEEeccCCcceeeee
Confidence            567788887443 46888899999999976632 211                  01124568999999994 5677888


Q ss_pred             eCCCeEEEEEecCCCcc-----------ccceEeccccccEEEEEEecCCCceEEEEEcC-CCceEEEeCCCCceeEEee
Q 001310          415 YSKHIVQLYAYHGGSDA-----------RQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~-----------~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~  482 (1103)
                      +..| |.||........           .+...-.|| .+|+++.|.+||.  .+++++. |..|.|||..++..+....
T Consensus       160 Cr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~~  235 (445)
T KOG2139|consen  160 CRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLIP  235 (445)
T ss_pred             ecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCcccccc
Confidence            7776 999987532111           111223455 6899999999999  6777774 5689999999998877665


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      ...+.+.-+.|+|  |+.+|+++.-|+..++|+....-.........+.|...+|+|+|++|+.+...   ...++-...
T Consensus       236 ~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sg---sp~lysl~f  310 (445)
T KOG2139|consen  236 KGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSG---SPRLYSLTF  310 (445)
T ss_pred             cCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcC---CceEEEEee
Confidence            5667788888855  77899999999999999655443333444445589999999999988765532   222322111


Q ss_pred             C--CCe-----------eEE------EEecccccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeeEEE
Q 001310          563 S--EGA-----------IKR------TYQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       563 ~--~~~-----------~~~------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~  615 (1103)
                      .  .+.           .+.      ...+...-.+...+++|.|.|.++++.-..        +.|.+||...--.+..
T Consensus       311 ~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vel  390 (445)
T KOG2139|consen  311 DGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVEL  390 (445)
T ss_pred             cCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEE
Confidence            1  110           000      111111124678999999999999986533        3466788765433332


Q ss_pred             Ec-CCCCCCCCceEEEec---CCCEEEEEECCCeEEEEEcC
Q 001310          616 ID-AGGGLPENPRICFNK---NGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       616 ~~-~~~~~~~v~~v~~s~---~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      .. +.........++|+|   ++.+|.++-..|.+.-|++.
T Consensus       391 s~cg~i~ge~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  391 SYCGMIGGEYPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EecccccCCCCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence            21 111112245677776   67888888888888877654

>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]

Probab=99.60  E-value=1.2e-13  Score=154.36  Aligned_cols=259  Identities=17%  Similarity=0.186  Sum_probs=186.6

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      ..+.-- .+|.|++|+|....++|.|..+|.|.+||+..+.....             ..-......|..+|+.+.|-.+
T Consensus       237 ~~~~~~-s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~-------------s~ls~~~~sh~~~v~~vvW~~~  302 (555)
T KOG1587|consen  237 LVLESP-SEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPP-------------SGLSALEVSHSEPVTAVVWLQN  302 (555)
T ss_pred             EEEecC-CceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCC-------------cccccccccCCcCeEEEEEecc
Confidence            344443 49999999999888999999999999999988765311             0011225579999999999875


Q ss_pred             CC--EEEEEeCCCeEEEEEecCCCccccceEec---------cccccEEEEEEecCCCceEEEEEcCCCceEEEe---CC
Q 001310          408 GS--LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD---AV  473 (1103)
Q Consensus       408 g~--~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd---~~  473 (1103)
                      -.  -+++++.||.|..|+++.-........+.         .-...+++++|.+.... .++.|+.+|.|.-=+   ..
T Consensus       303 ~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G~v~~~~r~g~~  381 (555)
T KOG1587|consen  303 EHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEGKVYKGCRKGYT  381 (555)
T ss_pred             CCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCcEEEEEeccCCc
Confidence            44  49999999999999876533211110111         11236899999987776 788899999887733   22


Q ss_pred             CCc-----eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-CCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          474 TGS-----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       474 ~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      .+.     .+..+..|.++|+++.++|-.. ..+.+++ |-++++|.-. .......+......+++++|||-...++++
T Consensus       382 ~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~  459 (555)
T KOG1587|consen  382 PAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFAT  459 (555)
T ss_pred             ccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEE
Confidence            222     1335567889999999876543 2344444 9999999887 555666677777779999999988777766


Q ss_pred             ecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310          548 GTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  609 (1103)
                      .   +++|.|.+||+....  ++.+.....   ...+.+.|+++|+.+++|...|++.+|++..
T Consensus       460 ~---d~~G~l~iWDLl~~~~~Pv~s~~~~~---~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~  517 (555)
T KOG1587|consen  460 V---DGDGNLDIWDLLQDDEEPVLSQKVCS---PALTRVRWSPNGKLLAVGDANGTTHILKLSE  517 (555)
T ss_pred             E---cCCCceehhhhhccccCCcccccccc---cccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence            5   457889999997543  333333222   5677888999999999999999999999864

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.60  E-value=2.8e-13  Score=141.43  Aligned_cols=169  Identities=11%  Similarity=0.154  Sum_probs=126.3

Q ss_pred             ecCCCEEEEEc-CCeEEEEEcCCceeeEEec----CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------
Q 001310          811 SKNDAYLFSAS-GGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------  875 (1103)
Q Consensus       811 s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------  875 (1103)
                      .+.+--+.++- -|.|.+.|....+..+.+.    -....++++.|-|.+...+.++-.+|.+++||..-          
T Consensus       182 ~~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~  261 (636)
T KOG2394|consen  182 TPKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQ  261 (636)
T ss_pred             CCCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccc
Confidence            35555556664 5888888876532222121    13368999999997677888888999999997531          


Q ss_pred             ----cee--------------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCC
Q 001310          876 ----SEV--------------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  937 (1103)
Q Consensus       876 ----~~~--------------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  937 (1103)
                          +..              +..+.--.+.|...+|||||++||+.+.||.++|+|..+.+     ++...+...   +
T Consensus       262 ~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~e-----Llg~mkSYF---G  333 (636)
T KOG2394|consen  262 ALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQE-----LLGVMKSYF---G  333 (636)
T ss_pred             ccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHH-----HHHHHHhhc---c
Confidence                111              11222224578889999999999999999999999999854     233333333   3


Q ss_pred             CceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc
Q 001310          938 SETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1103)
Q Consensus       938 ~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1103)
                      ...|++|||||++|++| .|.-|.||.+...+.+.. -.+|...|+.|+|.|
T Consensus       334 GLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVAR-GqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  334 GLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVAR-GQGHKSWVSVVAFDP  384 (636)
T ss_pred             ceEEEEEcCCccEEEecCCcceEEEEEeccceEEEe-ccccccceeeEeecc
Confidence            78999999999999995 899999999999988876 778999999999987

>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]

Probab=99.59  E-value=2.9e-11  Score=137.24  Aligned_cols=199  Identities=16%  Similarity=0.161  Sum_probs=155.5

Q ss_pred             cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce--EEEEeeecCCccEEEEEECCCeEEEEEcCCCC
Q 001310          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG  520 (1103)
Q Consensus       443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  520 (1103)
                      .|....+.-+.+  .++.+..+..+-+||...+.....+.......  .++-+-.+.+.-++++|+.-+.|.+|+....+
T Consensus        89 wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn  166 (967)
T KOG0974|consen   89 WIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDN  166 (967)
T ss_pred             cccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccC
Confidence            344455566666  57777778899999988887766654332221  11222234455789999999999999988555


Q ss_pred             eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE-EEecccccCCceEEEEEcCCCCEEEEEeCC
Q 001310          521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDD  599 (1103)
Q Consensus       521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  599 (1103)
                      ....+.+|.+.|..+.++.||+++++++.    |..+++|++.+++... ..-+|.   ..+..+.|.|+  .+++++.|
T Consensus       167 ~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~~~fgHs---aRvw~~~~~~n--~i~t~ged  237 (967)
T KOG0974|consen  167 KPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGCTGFGHS---ARVWACCFLPN--RIITVGED  237 (967)
T ss_pred             CcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCccccccc---ceeEEEEeccc--eeEEeccc
Confidence            55578999999999999999999999987    5669999999988776 555666   89999999997  89999999


Q ss_pred             CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          600 HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       600 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      .+.++|+.+ +..+..+..|.. ..+..++..++....++++.|+.+++|++...
T Consensus       238 ctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r  290 (967)
T KOG0974|consen  238 CTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR  290 (967)
T ss_pred             eEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence            999999765 444556666654 46899999999999999999999999998754

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.59  E-value=2.5e-13  Score=133.07  Aligned_cols=235  Identities=14%  Similarity=0.161  Sum_probs=178.1

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-  473 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-  473 (1103)
                      -..+|+|.||++|+..+|.+-....|.||.....+......++..|...|+.++|+|.+.  .|++|+.|..-++|... 
T Consensus         9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~   86 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS   86 (361)
T ss_pred             ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence            346999999999999999999999999999998887777778999999999999999998  69999999999999973 


Q ss_pred             CC--ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE----EecCCCccEEEEEEccCCCEEEEE
Q 001310          474 TG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       474 ~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      .+  ++...+..+....+++.|+|.  +..+++|+.-..|.||-++....-.    .-+.....|.++.|+|++-+|+++
T Consensus        87 ~~~WkptlvLlRiNrAAt~V~WsP~--enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   87 GGTWKPTLVLLRINRAATCVKWSPK--ENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCeeccceeEEEeccceeeEeecCc--CceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            33  445566678899999999764  4699999999999999887655432    334455679999999999999998


Q ss_pred             ecCCCCceeEEEEeC-----CC-------------CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310          548 GTSKEGESFLVEWNE-----SE-------------GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  609 (1103)
                      +.    |+..+++..     ++             |++...+..   ..+.+..+.|+|+|+.|+-.+.|.++.+-|...
T Consensus       165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~---~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~  237 (361)
T KOG1523|consen  165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASS---SGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAG  237 (361)
T ss_pred             cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhcc---CCCceeeeEeCCCCCEeeEecCCCceEEeecCC
Confidence            86    334555532     11             222233322   247899999999999999999999999999877


Q ss_pred             Ce-eEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310          610 VQ-LLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1103)
Q Consensus       610 ~~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d  643 (1103)
                      .. .+...... . -+..++.|-.+... +.++.|
T Consensus       238 p~~~v~~~~~~-~-lP~ls~~~ise~~v-v~ag~~  269 (361)
T KOG1523|consen  238 PSERVQSVATA-Q-LPLLSVSWISENSV-VAAGYD  269 (361)
T ss_pred             Cchhccchhhc-c-CCceeeEeecCCce-eecCCC
Confidence            65 23333222 1 34566666655443 334444

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=6.9e-14  Score=158.98  Aligned_cols=230  Identities=18%  Similarity=0.189  Sum_probs=151.7

Q ss_pred             CCccceeEecccCCcCceEEEecCCCceEEEEEcC---CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1103)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  397 (1103)
                      +......+.+..|...+...+|||||+++ +..+.   +..|.+||+.+++......                 +.+|  
T Consensus       190 d~dg~~~~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l~~-----------------~~g~--  249 (429)
T PRK01742        190 DYDGFNQFIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVVAS-----------------FRGH--  249 (429)
T ss_pred             CCCCCCceEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEEec-----------------CCCc--
Confidence            33444567788888899999999999964 54443   2479999998886432100                 2333  


Q ss_pred             cEEEEEECCCCCEEEEEe-CCCeEEEE--EecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          398 SVNRVVWSPDGSLLGVAY-SKHIVQLY--AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~-~d~~i~iw--d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                       ..+++|||||++|++++ .+|.+.||  |+.++.. .   .+..+...+...+|+|||+. ++++...++...||++..
T Consensus       250 -~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~  323 (429)
T PRK01742        250 -NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSA  323 (429)
T ss_pred             -cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEEC
Confidence             34689999999998875 57765555  5555542 2   45567777889999999995 334455678888887653


Q ss_pred             C-ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          475 G-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       475 ~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      . .....+ .+..  ....|  +++|..|+..+.++. .+||+.++........  .....+.|+|||++++.++.++. 
T Consensus       324 ~~~~~~~l-~~~~--~~~~~--SpDG~~ia~~~~~~i-~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~~g~-  394 (429)
T PRK01742        324 SGGGASLV-GGRG--YSAQI--SADGKTLVMINGDNV-VKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSSTQGL-  394 (429)
T ss_pred             CCCCeEEe-cCCC--CCccC--CCCCCEEEEEcCCCE-EEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEcCCC-
Confidence            2 222333 3433  34455  557788888877654 4599987765433222  23356789999999999876322 


Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1103)
                      ...+.+++ .+|+..+.+..+.   +.+...+|+|-
T Consensus       395 ~~~l~~~~-~~G~~~~~l~~~~---g~~~~p~wsp~  426 (429)
T PRK01742        395 GKVLQLVS-ADGRFKARLPGSD---GQVKFPAWSPY  426 (429)
T ss_pred             ceEEEEEE-CCCCceEEccCCC---CCCCCcccCCC
Confidence            22233444 3577777887666   67788888874

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=99.59  E-value=2.3e-14  Score=149.33  Aligned_cols=245  Identities=13%  Similarity=0.178  Sum_probs=170.6

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      ..+.|.||++-|.|++|+.||. +|++||.|-.+.|||.-..+.++.                  +-.||...|.++.|-
T Consensus        42 lE~eL~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllhs------------------I~TgHtaNIFsvKFv  102 (758)
T KOG1310|consen   42 LEAELTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLHS------------------ISTGHTANIFSVKFV  102 (758)
T ss_pred             hhhhhccccceecceeecCCCC-EEeecCCcceEEeecchhcceeee------------------eecccccceeEEeee
Confidence            3467899999999999999998 899999999999999987777654                  367899999999999


Q ss_pred             C--CCCEEEEEeCCCeEEEEEecCCC-------ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310          406 P--DGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1103)
Q Consensus       406 p--dg~~las~~~d~~i~iwd~~~~~-------~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  476 (1103)
                      |  +.+.+++|..|..|+++|+...+       ...+...+..|...|..++-.|++.. .+.+++.||+|+-+|+....
T Consensus       103 P~tnnriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph  181 (758)
T KOG1310|consen  103 PYTNNRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPH  181 (758)
T ss_pred             ccCCCeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCc
Confidence            9  57789999999999999998521       12233356689999999999999965 89999999999999987532


Q ss_pred             -eeEE---------eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE-----ecCCCccEEEEE-EccC
Q 001310          477 -RTYS---------FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMA-YSAN  540 (1103)
Q Consensus       477 -~~~~---------~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~-~s~d  540 (1103)
                       +...         +...--...++.++|. +..+|+.|+.|-..++||.+.......     ......+..|+. |+|.
T Consensus       182 ~c~p~~~~~~~l~ny~~~lielk~ltisp~-rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~  260 (758)
T KOG1310|consen  182 VCNPDEDCPSILVNYNPQLIELKCLTISPS-RPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPG  260 (758)
T ss_pred             cCCccccccHHHHHhchhhheeeeeeecCC-CCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCc
Confidence             1111         1111123456777766 447999999999999999532211110     011111122222 1221


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 001310          541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1103)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  616 (1103)
                      +-    ..              ..+.....       ...++-+.|+|+|.-|+..-....|+++|+..++....+
T Consensus       261 hl----kn--------------~~gn~~~~-------~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y  311 (758)
T KOG1310|consen  261 HL----KN--------------SQGNLDRY-------ITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY  311 (758)
T ss_pred             cc----cC--------------cccccccc-------eeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence            11    00              00100000       023667889999988887666678999999987765544

>KOG2139 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=1e-12  Score=130.58  Aligned_cols=300  Identities=12%  Similarity=0.140  Sum_probs=189.5

Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1103)
                      .+..++|++.-..++++..|-.|++|+.... ....++.                                         
T Consensus       100 dlr~~aWhqH~~~fava~nddvVriy~ksst-~pt~Lks-----------------------------------------  137 (445)
T KOG2139|consen  100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST-CPTKLKS-----------------------------------------  137 (445)
T ss_pred             ceeeEeechhhhhhhhhccCcEEEEeccCCC-CCceecc-----------------------------------------
Confidence            3567899987777888999999999987652 2222211                                         


Q ss_pred             eccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeee
Q 001310          704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1103)
Q Consensus       704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  783 (1103)
                                                  .....|.+++|-|.+..-++.+..+.|.+|..+.....       ...++..
T Consensus       138 ----------------------------~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~-------~r~~~~~  182 (445)
T KOG2139|consen  138 ----------------------------VSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA-------NRNIRMM  182 (445)
T ss_pred             ----------------------------hhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc-------ccccccc
Confidence                                        02345777888887666666666667888876543210       0001110


Q ss_pred             cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEE
Q 001310          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI  861 (1103)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las  861 (1103)
                         +..+...  +...+| .+|+++.+.+||..+++++  +..|.|||..++..+.-.....+.++-+.||| |+.+|.+
T Consensus       183 ---s~~~~qv--l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfa  255 (445)
T KOG2139|consen  183 ---STHHLQV--LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFA  255 (445)
T ss_pred             ---cccchhh--eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEE
Confidence               1111111  122234 8999999999999999998  57899999999887766655667889999999 8999999


Q ss_pred             EeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc----ee------eeee------
Q 001310          862 GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG----IQ------TCRS------  925 (1103)
Q Consensus       862 g~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~----~~------~~~~------  925 (1103)
                      ++-|+..++|............--.+.|...+|+|+|++|..+.... =++|.+.-..    ..      ....      
T Consensus       256 At~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~sgs-p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e  334 (445)
T KOG2139|consen  256 ATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACSGS-PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQE  334 (445)
T ss_pred             ecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEcCC-ceEEEEeecCCCccccCcccceeeeeeccchh
Confidence            99999999995543322222333455899999999998876544322 2344432211    00      0000      


Q ss_pred             eecCCCcccCCCCceEEEEcCCCCEEEEEeCC---------eEEEEECCCceEEEEeeCCC--CcCeEEEEEcc---CCC
Q 001310          926 LQTPDGVMTLAPSETHIQFHKDQTRFLLVHET---------HLAIYEAEELTCLKQWFPIS--SVPISQATFSC---DCR  991 (1103)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~---------~v~iwd~~~~~~~~~~~~~h--~~~v~~l~fs~---dg~  991 (1103)
                      +....+.....+++.+++|.|.|.+||+...+         .|.+||....-.+...+.+.  ...-..++|+|   +|.
T Consensus       335 ~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~  414 (445)
T KOG2139|consen  335 VTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGR  414 (445)
T ss_pred             hhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCc
Confidence            11112222223578999999999999995322         36678776543333222221  22345567765   667


Q ss_pred             EEEEEecCCcEEEEeCC
Q 001310          992 MVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       992 ~l~t~~~dg~v~vWd~~ 1008 (1103)
                      +|..+-.-|.+.-|++.
T Consensus       415 lLsiaWsTGriq~ypl~  431 (445)
T KOG2139|consen  415 LLSIAWSTGRIQRYPLT  431 (445)
T ss_pred             EEEEEeccCceEeeeeE
Confidence            77777777888777764

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.58  E-value=6.4e-12  Score=135.26  Aligned_cols=518  Identities=11%  Similarity=0.144  Sum_probs=307.0

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc------------cccceEeccccccEEEEEEecCCCceEEEEEc
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVNDLAFSAPCKQISVITCG  462 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~------------~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~  462 (1103)
                      ......|++|+....|+|+|+.||.++|-.+.+...            +..-.++.||...|.-+.|+.+.+  .|-|..
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~Q--KLTtSD   90 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQ--KLTTSD   90 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccc--cccccC
Confidence            456789999999999999999999999998865421            112236789999999999998888  699999


Q ss_pred             CCCceEEEeCCCCceeEEe--ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccC
Q 001310          463 DDKTIKVWDAVTGSRTYSF--EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN  540 (1103)
Q Consensus       463 ~d~~i~iwd~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d  540 (1103)
                      .+|.|.||-+-.|+-...+  ....+.|.+++|  +.+|..++..-.||.|.+=.++... +.--...+.....+.|++|
T Consensus        91 t~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW--n~dG~kIcIvYeDGavIVGsvdGNR-IwgKeLkg~~l~hv~ws~D  167 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW--NLDGTKICIVYEDGAVIVGSVDGNR-IWGKELKGQLLAHVLWSED  167 (1189)
T ss_pred             CCceEEEEeeecccHHHHHhhCcCccEEEEEEE--cCCCcEEEEEEccCCEEEEeeccce-ecchhcchheccceeeccc
Confidence            9999999998877654333  224456788888  5588899999999998876655432 1211222233457889999


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCC-------eeEEEEecc-cccCCceEEEEEc--------CCCCEEEEEeCCCcEEE
Q 001310          541 GRRLFSCGTSKEGESFLVEWNESEG-------AIKRTYQGL-QLQHNSVSVVHFD--------TAKDQILAAGDDHVIKI  604 (1103)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~-~~~~~~v~~~~~~--------~~~~~l~~~~~dg~i~i  604 (1103)
                      .+.++.+-.    ++.+.++|.+..       .+.....+. ......+..+.|.        |+...++.+-.+|.+.|
T Consensus       168 ~~~~Lf~~a----nge~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~Qi  243 (1189)
T KOG2041|consen  168 LEQALFKKA----NGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQI  243 (1189)
T ss_pred             HHHHHhhhc----CCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehh
Confidence            998877655    344888886532       111111110 0001224445553        57889999999999988


Q ss_pred             EECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC---------eEEEEEcCCCCeeEeccccccceeeeEEecC
Q 001310          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN---------RIKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1103)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg---------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~  675 (1103)
                      ..-.+......+...   -.+....|+++|..|++++.+.         .|.+|. .-|..+.+++.+...|++++|-..
T Consensus       244 MR~eND~~Pvv~dtg---m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~~It~lsWEg~  319 (1189)
T KOG2041|consen  244 MRSENDPEPVVVDTG---MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGSCITGLSWEGT  319 (1189)
T ss_pred             hhhcCCCCCeEEecc---cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCceeeeeEEcCC
Confidence            765554433333322   3467899999999999987643         233332 234445555555555555555432


Q ss_pred             CceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC
Q 001310          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1103)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  755 (1103)
                      +..++..                       .|+.|.+=++.                           |+-+  -.....
T Consensus       320 gLriA~A-----------------------vdsfiyfanIR---------------------------P~yk--Wgy~e~  347 (1189)
T KOG2041|consen  320 GLRIAIA-----------------------VDSFIYFANIR---------------------------PEYK--WGYIEE  347 (1189)
T ss_pred             ceEEEEE-----------------------ecceEEEEeec---------------------------ccce--EEEeee
Confidence            2222111                       11111111110                           1000  000000


Q ss_pred             ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEc-CCc
Q 001310          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV-MTF  833 (1103)
Q Consensus       756 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~-~~~  833 (1103)
                      ..|.+|.         +.....--+..||..+.+....       .-....+++++.+.-.|+.-. ++.+.-++. ++.
T Consensus       348 TvVy~y~---------~~e~p~y~i~Fwdtk~nek~vK-------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~~  411 (1189)
T KOG2041|consen  348 TVVYVYQ---------KEELPQYGIMFWDTKTNEKTVK-------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLENR  411 (1189)
T ss_pred             EEEEEEc---------cCCCcceEEEEEecccChhhhh-------hhcceeehheecccEEEEeccccCCCcchhhhhcc
Confidence            1111111         0111112345666666553322       233456777777766666554 455554422 111


Q ss_pred             eeeEEec-----C-----CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-------------------------
Q 001310          834 KTILTIM-----P-----PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-------------------------  878 (1103)
Q Consensus       834 ~~~~~~~-----~-----~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-------------------------  878 (1103)
                      ..+..+.     +     .-..|.-.-..- ++..++.++.+ .+.+|.....+.                         
T Consensus       412 ~~~~~l~LCNSIGT~lD~kytdirP~Fv~v-n~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~  489 (1189)
T KOG2041|consen  412 SRVYFLQLCNSIGTSLDYKYTDIRPKFVCV-NGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQ  489 (1189)
T ss_pred             cceEEEeeecccCCcCCCCcceeeeeEEEe-cceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCccchh
Confidence            1111110     0     001122111122 55677777766 477886543211                         


Q ss_pred             -------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE
Q 001310          879 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1103)
Q Consensus       879 -------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  951 (1103)
                             ..++.|..++|.+++.|  .++|..+-..|.|.-+.+.+.-+.....+         ...+.+++..-+...+
T Consensus       490 d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~---------n~~~y~~~lNCnstRl  558 (1189)
T KOG2041|consen  490 DRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPV---------NPSIYSIKLNCNSTRL  558 (1189)
T ss_pred             hceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecccc---------CchheeEeeccCcchh
Confidence                   23445667788888886  57888899999999999988543332111         1258889999998888


Q ss_pred             EEE-eCCeEEEEECC---CceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001310          952 LLV-HETHLAIYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus       952 ~~~-~d~~v~iwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
                      |+- .-|.+.+.|+.   +|..+..+.......|+.+.|..|...|+.--+...++|++
T Consensus       559 AiId~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifr  617 (1189)
T KOG2041|consen  559 AIIDLVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFR  617 (1189)
T ss_pred             hhhhhhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEec
Confidence            874 66777777775   46666555666678899999988887666554455555554

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=99.58  E-value=2.4e-13  Score=155.38  Aligned_cols=365  Identities=12%  Similarity=0.049  Sum_probs=217.3

Q ss_pred             CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCc---cceeeeccC
Q 001310          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS---ECQSLLLPS  730 (1103)
Q Consensus       654 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~---~~~~~~~~~  730 (1103)
                      |..+..+..|+..+..++.+                     ++++.++++|+.||+|++|+...-...   ........ 
T Consensus      1038 G~lVAhL~Ehs~~v~k~a~s---------------------~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys- 1095 (1431)
T KOG1240|consen 1038 GILVAHLHEHSSAVIKLAVS---------------------SEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYS- 1095 (1431)
T ss_pred             ceEeehhhhccccccceeec---------------------CCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEe-
Confidence            45666677777777777776                     577899999999999999997642222   11111111 


Q ss_pred             ccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1103)
Q Consensus       731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  810 (1103)
                       .....+..+.+.+.+..+++++.||.|++.+++....    ....           +.+.......  ....-+.+-++
T Consensus      1096 -~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~----~~~~-----------~~~~ri~n~~--~~g~vv~m~a~ 1157 (1431)
T KOG1240|consen 1096 -PEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV----SKRV-----------ATQVRIPNLK--KDGVVVSMHAF 1157 (1431)
T ss_pred             -ccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc----ccce-----------eeeeeccccc--CCCceEEeecc
Confidence             1457889999999999999999999999999876311    0000           0111111111  12223334444


Q ss_pred             ecC-CC-EEEEEc-CCeEEEEEcCCceeeEEecC--CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-
Q 001310          811 SKN-DA-YLFSAS-GGVISLYIVMTFKTILTIMP--PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-  884 (1103)
Q Consensus       811 s~d-~~-~l~~~~-dg~i~iwd~~~~~~~~~~~~--~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-  884 (1103)
                      ... +. .++.+. .+.|..||+.+.....+++.  ..+.|++++.+| .+.++++|+..|.+.+||++-+.++..+.- 
T Consensus      1158 ~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi~idp-~~~WlviGts~G~l~lWDLRF~~~i~sw~~P 1236 (1431)
T KOG1240|consen 1158 TAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSIVIDP-WCNWLVIGTSRGQLVLWDLRFRVPILSWEHP 1236 (1431)
T ss_pred             cccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEEEecC-CceEEEEecCCceEEEEEeecCceeecccCc
Confidence            433 23 455555 48899999987766665543  457899999999 899999999999999999998888877652 


Q ss_pred             CCCCEEEEEEccCC---CEEEEEe--CCCeEEEEEcCCCceeeeeeeecCCCc-----------ccCCCCceEEEEcCCC
Q 001310          885 HSKRVTGLVFSDAL---NILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGV-----------MTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       885 h~~~V~~l~~s~dg---~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~-----------~~~~~~v~~l~fs~dg  948 (1103)
                      +..+|..+...|--   ...++++  ..+.|.+|++.+|..............           .+........++...+
T Consensus      1237 ~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~ 1316 (1431)
T KOG1240|consen 1237 ARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN 1316 (1431)
T ss_pred             ccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC
Confidence            55778888777643   4555554  467899999999865442222200000           0111122333444445


Q ss_pred             CEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcE-EEEeCCCcee--EEeeccccccCC
Q 001310          949 TRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLEV--QCRILSTAYLRP 1024 (1103)
Q Consensus       949 ~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v-~vWd~~~~~~--~~~~~~~~~~~~ 1024 (1103)
                      .++.+ ++|..|+.||....+...-...+.+.......++.+ ..++.++.--.. .......+..  ..........+.
T Consensus      1317 ~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~-~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~~~~~~ 1395 (1431)
T KOG1240|consen 1317 GFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYD-LSTIPGSQFIDEFIIYQQTVGLTEALRENQKLRPGPS 1395 (1431)
T ss_pred             ceeeecCCccceeeccCCCcccccccccCccccccccchhcc-ccccCCCccchhhhhhhhhcCchhhcccccccccCCC
Confidence            55555 589999999998665542212232333333333322 223333221111 1111111110  000110011111


Q ss_pred             CCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310         1025 TTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus      1025 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
                      .++        ..|-..|..++.+..++  .+|++++.||.|.||.
T Consensus      1396 ~ps--------~~H~d~Itdma~~~~~q--~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1396 DPS--------TYHHDPITDMATLKSEQ--PLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred             CCc--------ccccchhhhhhhhccCc--cEEEEecCCCeeeecC
Confidence            111        14667788777777654  6999999999999995

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.57  E-value=6.9e-12  Score=123.15  Aligned_cols=241  Identities=13%  Similarity=0.173  Sum_probs=168.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-----CCceEEEeC
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----DKTIKVWDA  472 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-----d~~i~iwd~  472 (1103)
                      ...+++|..|..-+++|..+| .+||+.+.-+...   .-..+.+.+.-+..---.+.+.|+-|+.     -..|.|||=
T Consensus         7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLfR~N~laLVGGg~~pky~pNkviIWDD   82 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLFRSNYLALVGGGSRPKYPPNKVIIWDD   82 (346)
T ss_pred             ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhhhhceEEEecCCCCCCCCCceEEEEec
Confidence            344599999999999998888 8999987532211   1111222222222222233323343333     246999996


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-CCCeeEEecCCC--ccEEEEEEccCCCEEEEEec
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGARVDYDAPG--LGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      ...+++.++. ...+|.++.+..    ..|+. -.++.|.+|.+. +.+....+....  ....+++-..+..+|+.-+ 
T Consensus        83 ~k~~~i~el~-f~~~I~~V~l~r----~riVv-vl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg-  155 (346)
T KOG2111|consen   83 LKERCIIELS-FNSEIKAVKLRR----DRIVV-VLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPG-  155 (346)
T ss_pred             ccCcEEEEEE-eccceeeEEEcC----CeEEE-EecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCC-
Confidence            6777887775 678899999843    23444 356789999987 444444443332  2343444333444444433 


Q ss_pred             CCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCc-EEEEECCCCeeEEEEcCCCCCCCCc
Q 001310          550 SKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENP  626 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1103)
                        -.-|.|++-|+...+.  ...+..|.   ..|.+++.+.+|..++++|..|+ |||||..+|+.+..+........+.
T Consensus       156 --~k~GqvQi~dL~~~~~~~p~~I~AH~---s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy  230 (346)
T KOG2111|consen  156 --FKTGQVQIVDLASTKPNAPSIINAHD---SDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY  230 (346)
T ss_pred             --CccceEEEEEhhhcCcCCceEEEccc---CceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence              2357799999876555  35667777   99999999999999999999998 7999999999999998766667899


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          627 RICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       627 ~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      +++|||++.+|+++++.|++.|+.+...
T Consensus       231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~  258 (346)
T KOG2111|consen  231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT  258 (346)
T ss_pred             EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence            9999999999999999999999998764

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.56  E-value=7e-09  Score=126.13  Aligned_cols=439  Identities=12%  Similarity=0.135  Sum_probs=249.7

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEE----EecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLY----AYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iw----d~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i  469 (1103)
                      ...+.|.++.+-+|...|+.+..+|.|.+.    +..+..    ......-...|.+++||||+.  +|+....++++.+
T Consensus        73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~----~E~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~  146 (928)
T PF04762_consen   73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDE----IEIVGSVDSGILAASWSPDEE--LLALVTGEGNLLL  146 (928)
T ss_pred             CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCce----eEEEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence            355789999999999999999999999998    444432    112334566899999999999  6666666777777


Q ss_pred             EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC----------e----eEEecCCCccEEEE
Q 001310          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG----------A----RVDYDAPGLGCTRM  535 (1103)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~----------~----~~~~~~~~~~i~~~  535 (1103)
                      -+ .+-..+....-+.....         ....++.|....=.-+.-..++          .    ...+. ....-..+
T Consensus       147 mt-~~fd~i~E~~l~~~~~~---------~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~I  215 (928)
T PF04762_consen  147 MT-RDFDPISEVPLDSDDFG---------ESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRI  215 (928)
T ss_pred             Ee-ccceEEEEeecCccccC---------CCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEE
Confidence            65 55555544433321110         0112222111100000000000          0    00111 23345678


Q ss_pred             EEccCCCEEEEEecCCC-C-ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCC
Q 001310          536 AYSANGRRLFSCGTSKE-G-ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKV  610 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~  610 (1103)
                      +|-.||.++++.+.+.. + ...+++|+-+ |.....-..-.   +--.+++|-|.|+.|++...   ...|.+|.. +|
T Consensus       216 SWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~---gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NG  290 (928)
T PF04762_consen  216 SWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVD---GLEGALSWRPSGNLIASSQRLPDRHDVVFFER-NG  290 (928)
T ss_pred             EECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCC---CccCCccCCCCCCEEEEEEEcCCCcEEEEEec-CC
Confidence            99999999998876333 2 5789999965 66544444322   45567899999999888653   456777764 34


Q ss_pred             eeEEEEcCC--CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310          611 QLLTTIDAG--GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1103)
Q Consensus       611 ~~~~~~~~~--~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  688 (1103)
                      -.-..+...  .....|..+.|++|+..||+...|. |.+|-..+-...-...-        .+.               
T Consensus       291 LrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei--------~~~---------------  346 (928)
T PF04762_consen  291 LRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEI--------RFS---------------  346 (928)
T ss_pred             cEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEE--------Ecc---------------
Confidence            444334332  2334689999999999999988765 99998776533211110        000               


Q ss_pred             EecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCC-cEEEEeecCceEEEeecCCCc
Q 001310          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG-QAIFALASNGVHLMWRWPRND  767 (1103)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g-~~l~~~~~dg~i~vw~~~~~~  767 (1103)
                                                                  ....+..+.|+|.. ..|...+.+|.+..+++.   
T Consensus       347 --------------------------------------------~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~---  379 (928)
T PF04762_consen  347 --------------------------------------------SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFA---  379 (928)
T ss_pred             --------------------------------------------CCCCCCceEECCCCCCEEEEEecCCcEEEEEEE---
Confidence                                                        01112225565543 335555555666555432   


Q ss_pred             cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec-CCCEEEEEcCCeEEEEEcCCcee-----eEEecC
Q 001310          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-NDAYLFSASGGVISLYIVMTFKT-----ILTIMP  841 (1103)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-d~~~l~~~~dg~i~iwd~~~~~~-----~~~~~~  841 (1103)
                                     |++..+.                   ..+| |...+++..+.++.+-.+...-.     ...+. 
T Consensus       380 ---------------~~v~~s~-------------------~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-  424 (928)
T PF04762_consen  380 ---------------WDVSRSP-------------------GSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-  424 (928)
T ss_pred             ---------------EEEEecC-------------------CCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-
Confidence                           2211111                   0011 11223333334455555443211     12232 


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--------EEEe----------ccCCCCEEEEEEccCCCEEEE
Q 001310          842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--------ISKL----------EGHSKRVTGLVFSDALNILVS  903 (1103)
Q Consensus       842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--------~~~l----------~~h~~~V~~l~~s~dg~~l~s  903 (1103)
                      ....|.+++|++ ++..+|+-..||.|.+|.......        ...+          ..-...+..++|..+...++.
T Consensus       425 ~~~~v~~vaf~~-~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  503 (928)
T PF04762_consen  425 LPSPVNDVAFSP-SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVL  503 (928)
T ss_pred             CCCCcEEEEEeC-CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEE
Confidence            346899999999 676799999999999998554221        1111          112345788899888777776


Q ss_pred             EeCC---CeEEEEEcCCCcee-eeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCc
Q 001310          904 SGGD---AQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEEL  967 (1103)
Q Consensus       904 ~s~d---g~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~  967 (1103)
                      ...+   ..+.++++...+.. .........      ..+..+...++...++. ..+|.+...+....
T Consensus       504 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~  566 (928)
T PF04762_consen  504 SDSDSNQSKIVLVDIDDSENSASVESSTEVD------GVVLIISSSPDSGSLYIQTNDGKVFQLSSDGE  566 (928)
T ss_pred             EecCcccceEEEEEeccCCCceeEEEEeccC------ceEEEEeeCCCCcEEEEEECCCEEEEeecCCC
Confidence            6654   57888888543211 111111111      13555555566553443 67888887666544

>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]

Probab=99.56  E-value=3e-13  Score=132.51  Aligned_cols=238  Identities=14%  Similarity=0.103  Sum_probs=177.9

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      -..+|+|.+|++|++ .+|++-....|.||.......-.                ....+..|...|+.+.|+|.+..|+
T Consensus         9 ~~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w~----------------~~htls~Hd~~vtgvdWap~snrIv   71 (361)
T KOG1523|consen    9 LLEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLWE----------------PAHTLSEHDKIVTGVDWAPKSNRIV   71 (361)
T ss_pred             ccCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCce----------------eceehhhhCcceeEEeecCCCCcee
Confidence            346999999999998 68888888899999987665211                1123778999999999999999999


Q ss_pred             EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee----EEeecCCCce
Q 001310          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPV  488 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v  488 (1103)
                      +|+.|..-+||....+...++...+..|...++++.|+|.+.  .+++|+.-+.|.||-.+...--    +.-+.+...|
T Consensus        72 tcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv  149 (361)
T KOG1523|consen   72 TCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTV  149 (361)
T ss_pred             EccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCccccce
Confidence            999999999999966666666667888999999999999999  7999999999999976654322    2223466789


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEc-----CCC-------------CeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLY-----DSL-------------GARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-----~~~-------------~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      .++.|++  ++-++++|+.|+..+++..     +..             ....++....+.+..+.|+|+|..|+-.+. 
T Consensus       150 ~sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-  226 (361)
T KOG1523|consen  150 TSLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-  226 (361)
T ss_pred             eeeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC-
Confidence            9999987  4478999999999999853     111             111233355668999999999999998875 


Q ss_pred             CCCceeEEEEeCCCCe-eEEEEecccccCCceEEEEEcCCCCEEEEEeCC
Q 001310          551 KEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD  599 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d  599 (1103)
                         +..+.+-|..... .+.......   -+..++.|-.+ +.++.++.|
T Consensus       227 ---ds~v~~~da~~p~~~v~~~~~~~---lP~ls~~~ise-~~vv~ag~~  269 (361)
T KOG1523|consen  227 ---DSTVSFVDAAGPSERVQSVATAQ---LPLLSVSWISE-NSVVAAGYD  269 (361)
T ss_pred             ---CCceEEeecCCCchhccchhhcc---CCceeeEeecC-CceeecCCC
Confidence               5558887766554 333333322   46666666554 345555544

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=2.2e-12  Score=146.20  Aligned_cols=238  Identities=10%  Similarity=0.114  Sum_probs=156.8

Q ss_pred             CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC---CCeEEEEEecCCCcccc
Q 001310          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  433 (1103)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~---d~~i~iwd~~~~~~~~~  433 (1103)
                      ..|.+||...+....                    +..+...+.+.+|||||+.||..+.   +..|.+|++.+|+... 
T Consensus       179 ~~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-  237 (429)
T PRK03629        179 YELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-  237 (429)
T ss_pred             eeEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE-
Confidence            368888887554322                    3346678999999999999997642   4579999998875322 


Q ss_pred             ceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC-Ce
Q 001310          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK  510 (1103)
Q Consensus       434 ~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~  510 (1103)
                         +....+.+...+|+|||+. ++++.+.++  .|++||+.+++..+ +..+...+....|+  +||..|+..+.+ +.
T Consensus       238 ---l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~-lt~~~~~~~~~~wS--PDG~~I~f~s~~~g~  310 (429)
T PRK03629        238 ---VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQ-VTDGRSNNTEPTWF--PDSQNLAYTSDQAGR  310 (429)
T ss_pred             ---ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEE-ccCCCCCcCceEEC--CCCCEEEEEeCCCCC
Confidence               2223333557899999995 233334454  58999998887654 33344556667774  577778776654 44


Q ss_pred             EEEE--EcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          511 IKAW--LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       511 i~iw--d~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      ..+|  |+.++... .+..........+|+|||++++..+... +...|++||+.+++... +...    .......|+|
T Consensus       311 ~~Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~~-g~~~I~~~dl~~g~~~~-Lt~~----~~~~~p~~Sp  383 (429)
T PRK03629        311 PQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSNG-GQQHIAKQDLATGGVQV-LTDT----FLDETPSIAP  383 (429)
T ss_pred             ceEEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEccC-CCceEEEEECCCCCeEE-eCCC----CCCCCceECC
Confidence            4555  55554432 3333344556789999999998876432 35579999998886543 3321    1234577999


Q ss_pred             CCCEEEEEeCCCc---EEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          589 AKDQILAAGDDHV---IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       589 ~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      ||+.|+.++.++.   ++++++. |.....+..+.  ..+...+|+|
T Consensus       384 DG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp  427 (429)
T PRK03629        384 NGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP  427 (429)
T ss_pred             CCCEEEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence            9999999887764   6777874 55555555432  3467788887

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.55  E-value=1.1e-12  Score=138.19  Aligned_cols=284  Identities=14%  Similarity=0.190  Sum_probs=205.6

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      +|...-+.|..||||+|++|+|..--.|++||+.+-.+...+.+                   ....|.-.-+|.|-..+
T Consensus        49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhl-------------------Dae~V~feiLsDD~SK~  109 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHL-------------------DAEVVDFEILSDDYSKS  109 (703)
T ss_pred             CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecc-------------------cccceeEEEeccchhhh
Confidence            45668889999999999999999999999999987654433211                   23456666667777777


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  491 (1103)
                      +.-..|.+|.+-.--+ ....  ..+.   ..-..++++.-...  |+.++....|+-++++.|+-+..+....+.++++
T Consensus       110 v~L~~DR~IefHak~G-~hy~--~RIP---~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v  181 (703)
T KOG2321|consen  110 VFLQNDRTIEFHAKYG-RHYR--TRIP---KFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVV  181 (703)
T ss_pred             eEeecCceeeehhhcC-eeee--eecC---cCCccccccCCCcc--EEEeecCcceEEEEccccccccccccccccceee
Confidence            7777888877654322 1110  0111   11224444443332  4445555579999999999999998888999999


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC------Cc-----cEEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1103)
                      .+++.  ..+|++|+.+|.|.+||.+.......+...      ..     .|+++.|+.+|-.+++|+.    .|.+++|
T Consensus       182 ~in~~--hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts----~G~v~iy  255 (703)
T KOG2321|consen  182 SINEE--HGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS----TGSVLIY  255 (703)
T ss_pred             eecCc--cceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----CCcEEEE
Confidence            88654  358999999999999999877655443321      11     4899999999999999976    5669999


Q ss_pred             eCCCCeeEEEEecccccCCceEEEEEcCC--CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTA--KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~  638 (1103)
                      |+++.+++..-....  .-+|..+.|.+.  ++.+++ .+...++|||-.+|+....+...   ..++.+|+-|++.+++
T Consensus       256 DLRa~~pl~~kdh~~--e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt---~~lND~C~~p~sGm~f  329 (703)
T KOG2321|consen  256 DLRASKPLLVKDHGY--ELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT---SDLNDFCFVPGSGMFF  329 (703)
T ss_pred             EcccCCceeecccCC--ccceeeecccccCCCceEEe-cchHHhhhcccccCCceeecccc---CCcCceeeecCCceEE
Confidence            999988765433222  367888999766  344444 34578999999999999888654   4489999999999999


Q ss_pred             EEECCCeEEEEEcCCC
Q 001310          639 VIANENRIKILETPES  654 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~~  654 (1103)
                      ++-.++.+..|=++..
T Consensus       330 ~Ane~~~m~~yyiP~L  345 (703)
T KOG2321|consen  330 TANESSKMHTYYIPSL  345 (703)
T ss_pred             EecCCCcceeEEcccc
Confidence            9999988887766643

>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=99.54  E-value=2.8e-12  Score=125.79  Aligned_cols=240  Identities=12%  Similarity=0.170  Sum_probs=168.3

Q ss_pred             CeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCC--CeeEEEEcCCCCCEEEE-EeCC------CeEEEEEcC
Q 001310          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIAI-GMDD------STILIYNAR  874 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~las-g~~d------g~v~iwd~~  874 (1103)
                      ...+++|..|...++++.+...+||+.+..+.......+..  .+..+-|-.   ++||. |+.+      ..|.|||=.
T Consensus         7 ~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR~---N~laLVGGg~~pky~pNkviIWDD~   83 (346)
T KOG2111|consen    7 KTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFRS---NYLALVGGGSRPKYPPNKVIIWDDL   83 (346)
T ss_pred             ceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhhh---ceEEEecCCCCCCCCCceEEEEecc
Confidence            44568999999999999998899999987554333332222  333344432   34443 4333      489999966


Q ss_pred             CceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-
Q 001310          875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-  953 (1103)
Q Consensus       875 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-  953 (1103)
                      ..+++.++. ...+|.++.+++|  .+++. -.+.|+||...+.-. ....+.+.....    ...+++=..+-.+||. 
T Consensus        84 k~~~i~el~-f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k-~l~~~et~~NPk----GlC~~~~~~~k~~LafP  154 (346)
T KOG2111|consen   84 KERCIIELS-FNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPK-LLHVIETRSNPK----GLCSLCPTSNKSLLAFP  154 (346)
T ss_pred             cCcEEEEEE-eccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChh-heeeeecccCCC----ceEeecCCCCceEEEcC
Confidence            677777777 6788999999876  45444 356799999985321 112333322211    2333333333444554 


Q ss_pred             E-eCCeEEEEECCCceE-EEEeeCCCCcCeEEEEEccCCCEEEEEecCCc-EEEEeCCCceeEEeeccccccCCCCCCCc
Q 001310          954 V-HETHLAIYEAEELTC-LKQWFPISSVPISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSHDK 1030 (1103)
Q Consensus       954 ~-~d~~v~iwd~~~~~~-~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1103)
                      | .-|.|.|-|+...+. ......+|...|.+++.+-+|..+||+|..|+ |||||..+|++++.+++..          
T Consensus       155 g~k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~----------  224 (346)
T KOG2111|consen  155 GFKTGQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGV----------  224 (346)
T ss_pred             CCccceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCC----------
Confidence            5 568999999986665 23457789999999999999999999999998 8999999999999988321          


Q ss_pred             eeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCC
Q 001310         1031 ILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075 (1103)
Q Consensus      1031 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1075 (1103)
                             -...|+  .++|+|+ ..+|+++++.|+|+++.+....
T Consensus       225 -------d~A~iy--~iaFSp~-~s~LavsSdKgTlHiF~l~~~~  259 (346)
T KOG2111|consen  225 -------DRADIY--CIAFSPN-SSWLAVSSDKGTLHIFSLRDTE  259 (346)
T ss_pred             -------chheEE--EEEeCCC-ccEEEEEcCCCeEEEEEeecCC
Confidence                   122366  5688888 8999999999999999985433

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.54  E-value=3.1e-12  Score=146.16  Aligned_cols=237  Identities=13%  Similarity=0.071  Sum_probs=161.0

Q ss_pred             CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC---CCeEEEEEecCCCcccc
Q 001310          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQ  433 (1103)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~---d~~i~iwd~~~~~~~~~  433 (1103)
                      ..|.+||...+....                    +..|...+.+.+|||||+.|+..+.   +..|.+||+.+++..  
T Consensus       182 ~~l~~~d~dg~~~~~--------------------lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~--  239 (435)
T PRK05137        182 KRLAIMDQDGANVRY--------------------LTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE--  239 (435)
T ss_pred             eEEEEECCCCCCcEE--------------------EecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence            478888875543321                    4568889999999999999998763   468999999887532  


Q ss_pred             ceEeccccccEEEEEEecCCCceEEEEEcCCCc--eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CC-
Q 001310          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG-  509 (1103)
Q Consensus       434 ~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg-  509 (1103)
                        .+..+.+.+.+.+|+|||+. ++++.+.++.  |.+||+.++.. ..+..+........|+  +||..|+..+. +| 
T Consensus       240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~~~~~~~~~~~s--pDG~~i~f~s~~~g~  313 (435)
T PRK05137        240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTT-TRLTDSPAIDTSPSYS--PDGSQIVFESDRSGS  313 (435)
T ss_pred             --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCce-EEccCCCCccCceeEc--CCCCEEEEEECCCCC
Confidence              34456667889999999995 3455666655  77779887765 4455566556666774  57777777663 33 


Q ss_pred             -eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          510 -KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       510 -~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                       .|.++|+..+.... +......+....|+|||+.|+...... +...|.+||+.++.. +.+.. .   ..+....|+|
T Consensus       314 ~~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~~-~~~~i~~~d~~~~~~-~~lt~-~---~~~~~p~~sp  386 (435)
T PRK05137        314 PQLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQGG-GQFSIGVMKPDGSGE-RILTS-G---FLVEGPTWAP  386 (435)
T ss_pred             CeEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcCC-CceEEEEEECCCCce-EeccC-C---CCCCCCeECC
Confidence             57778876654433 322344566788999999999876432 346799999866543 33332 1   2456788999


Q ss_pred             CCCEEEEEeCC------CcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          589 AKDQILAAGDD------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       589 ~~~~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      ||+.|+..+.+      ..++++|+..+.. ..+...+   .+...+|+|
T Consensus       387 DG~~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp  432 (435)
T PRK05137        387 NGRVIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP  432 (435)
T ss_pred             CCCEEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence            99998875542      3578888876554 3443221   256667776

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.53  E-value=4.1e-14  Score=145.00  Aligned_cols=269  Identities=16%  Similarity=0.172  Sum_probs=212.7

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      ..-....+.++.+|++|+.|+..|.|..+|+.++.....   + .-...|.++.|..+.+  +++ ......++||| ..
T Consensus       128 ~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~E---i-~v~Etv~Dv~~LHneq--~~A-VAQK~y~yvYD-~~  199 (545)
T KOG1272|consen  128 PEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFE---I-NVMETVRDVTFLHNEQ--FFA-VAQKKYVYVYD-NN  199 (545)
T ss_pred             cccCCeeeeecCCccEEEecCCccceeeeecccceeeee---e-ehhhhhhhhhhhcchH--HHH-hhhhceEEEec-CC
Confidence            345677899999999999999999999999999865442   2 2345788999998877  444 44577899999 88


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCc
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1103)
                      |..++.++.| ..|..+.|.|.  --+|++++..|.++.-|+.+++....+....+.+..++-+|-+..+-.|..    .
T Consensus       200 GtElHClk~~-~~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----n  272 (545)
T KOG1272|consen  200 GTELHCLKRH-IRVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----N  272 (545)
T ss_pred             CcEEeehhhc-Cchhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----C
Confidence            9999998755 46777777653  367889999999999999999998888888889999999998888877765    7


Q ss_pred             eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1103)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g  634 (1103)
                      |+|.+|...+.+.+..+..|.   ++|.++++.++|+++++.+.|..++|||++....+.++...   .+...+++|..|
T Consensus       273 GtVSlWSP~skePLvKiLcH~---g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp---~~a~~ls~Sqkg  346 (545)
T KOG1272|consen  273 GTVSLWSPNSKEPLVKILCHR---GPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP---HPASNLSLSQKG  346 (545)
T ss_pred             ceEEecCCCCcchHHHHHhcC---CCcceEEECCCCcEEeecccccceeEeeeccccccceeecC---CCcccccccccc
Confidence            789999999999999998888   99999999999999999999999999999988877666552   235788898766


Q ss_pred             CEEEEEECCCeEEEEEcCCC-----CeeEeccccccceeeeEEecCCceeeeeccCC
Q 001310          635 TLLAVIANENRIKILETPES-----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1103)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~-----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  686 (1103)
                       +||.+. ...+.||.-...     ........-...|..+.|.|...++++|-..|
T Consensus       347 -lLA~~~-G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G  401 (545)
T KOG1272|consen  347 -LLALSY-GDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGG  401 (545)
T ss_pred             -ceeeec-CCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCC
Confidence             444443 346899953321     11111122234788999999998888876665

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.53  E-value=1.5e-12  Score=147.53  Aligned_cols=233  Identities=14%  Similarity=0.105  Sum_probs=152.7

Q ss_pred             cCCccceeEecccCCcCceEEEecCCCceEEEEEc--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1103)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  397 (1103)
                      .+......+.+..+...+...+|||||++++.+..  .+..|.+||+.+|+....                    ....+
T Consensus       184 ~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l--------------------~~~~~  243 (429)
T PRK03629        184 SDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQV--------------------ASFPR  243 (429)
T ss_pred             EcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEc--------------------cCCCC
Confidence            33334444566667778999999999996554432  245799999988864431                    11223


Q ss_pred             cEEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-CCc--eEEEe
Q 001310          398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKT--IKVWD  471 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~--i~iwd  471 (1103)
                      .+..++|||||+.|+.. +.+|  .|.+||+.+++..    .+..+...+....|+|||+.  |+..+. ++.  |.++|
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~----~lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy~~d  317 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIR----QVTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVYKVN  317 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EccCCCCCcCceEECCCCCE--EEEEeCCCCCceEEEEE
Confidence            34568999999999875 3344  5899999887533    24444556788999999994  544443 444  44557


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      +.+++. ..+..+........|  ++||.+|+..+.+   ..|.+||++++.... +.. ........|+|||+.++..+
T Consensus       318 ~~~g~~-~~lt~~~~~~~~~~~--SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~-Lt~-~~~~~~p~~SpDG~~i~~~s  392 (429)
T PRK03629        318 INGGAP-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LTD-TFLDETPSIAPNGTMVIYSS  392 (429)
T ss_pred             CCCCCe-EEeecCCCCccCEEE--CCCCCEEEEEEccCCCceEEEEECCCCCeEE-eCC-CCCCCCceECCCCCEEEEEE
Confidence            666654 344434444455666  4577788776543   358889988776443 222 12334678999999999988


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      .++. ...++++++ +|...+.+.++.   +.+...+|+|
T Consensus       393 ~~~~-~~~l~~~~~-~G~~~~~l~~~~---~~~~~p~Wsp  427 (429)
T PRK03629        393 SQGM-GSVLNLVST-DGRFKARLPATD---GQVKFPAWSP  427 (429)
T ss_pred             cCCC-ceEEEEEEC-CCCCeEECccCC---CCcCCcccCC
Confidence            6443 456888887 455556666655   6677788876

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.52  E-value=2.7e-09  Score=110.35  Aligned_cols=397  Identities=13%  Similarity=0.113  Sum_probs=222.1

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEE----Ec--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLV----GT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llas----gs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      ..+.+..|-+-|+...|+|||+.++.+    |+  ....+.+.+.+.|+..+..-                 + |  ...
T Consensus        70 ~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRiTy-----------------f-G--r~f  129 (668)
T COG4946          70 KPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRITY-----------------F-G--RRF  129 (668)
T ss_pred             CeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEEEE-----------------e-c--ccc
Confidence            345667788899999999999975542    22  23568888888888665311                 2 2  233


Q ss_pred             EE-EEECCCCCEEEEEeCCCe----EEEEEecCCCc-cccceEeccccccEEEEEEecCCCceEEEEEcCCC--------
Q 001310          400 NR-VVWSPDGSLLGVAYSKHI----VQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--------  465 (1103)
Q Consensus       400 ~~-~~~spdg~~las~~~d~~----i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--------  465 (1103)
                      +. .-|+|||+.|++...-.-    -.+|.+..... ..     .-.-++.+.+.+- ||.   ++.|-.--        
T Consensus       130 T~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e-----~LnlGpathiv~~-dg~---ivigRntydLP~WK~Y  200 (668)
T COG4946         130 TRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE-----PLNLGPATHIVIK-DGI---IVIGRNTYDLPHWKGY  200 (668)
T ss_pred             ceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee-----eccCCceeeEEEe-CCE---EEEccCcccCcccccc
Confidence            33 459999999998754321    23444443221 11     1123445555553 443   33332111        


Q ss_pred             ----ceEEEeCCC-CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccC
Q 001310          466 ----TIKVWDAVT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN  540 (1103)
Q Consensus       466 ----~i~iwd~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d  540 (1103)
                          .=++|--.. |+....+-.-.+.|.+-.+.   .++.......||.=.+|..+-...-..-...-....+=..+.|
T Consensus       201 kGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV---~~RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtdYY~R~~nsD  277 (668)
T COG4946         201 KGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIV---GERVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTDYYPRNANSD  277 (668)
T ss_pred             cCCccceEEEEecCCcceeeeeecCCCcCCceEE---cceEEEEecccCccceEEeccCCchhhhcCCchhccccccCCC
Confidence                124453322 22222222122222221110   1122223334444344433221111111111112333445779


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccccc-----CCceEE---EE-Ec-CCCCEEEEEeCCCcEEEEECCCC
Q 001310          541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ-----HNSVSV---VH-FD-TAKDQILAAGDDHVIKIWDMNKV  610 (1103)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-----~~~v~~---~~-~~-~~~~~l~~~~~dg~i~iwd~~~~  610 (1103)
                      |+.++...     .+-|+++|..+......--+....     ...+.-   +. |+ .+|++++..|. |...|.+...+
T Consensus       278 GkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~  351 (668)
T COG4946         278 GKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG  351 (668)
T ss_pred             CcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC
Confidence            99988754     233999998876554332221100     000111   11 22 24677777764 66777776655


Q ss_pred             eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC-eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceE
Q 001310          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  689 (1103)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  689 (1103)
                      -.++.-.    ...|.-..+..+++-++.|..|| .+-|++..+++.-...                             
T Consensus       352 ~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e-----------------------------  398 (668)
T COG4946         352 YSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIE-----------------------------  398 (668)
T ss_pred             eeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEee-----------------------------
Confidence            5444321    22366677777778889999988 8899988876422211                             


Q ss_pred             ecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccc
Q 001310          690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  769 (1103)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~  769 (1103)
                                                                ..-+.|.++..+++|+.++++.....+.+.|++.+.. 
T Consensus       399 ------------------------------------------~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv-  435 (668)
T COG4946         399 ------------------------------------------KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV-  435 (668)
T ss_pred             ------------------------------------------CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe-
Confidence                                                      1335688899999999999888888777777655431 


Q ss_pred             cccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-C----CeEEEEEcCCceeeEEecCCCC
Q 001310          770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----GVISLYIVMTFKTILTIMPPSP  844 (1103)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d----g~i~iwd~~~~~~~~~~~~~~~  844 (1103)
                                           .+..    .....-|+.++++|+++++|.+- +    ..|+++|+..++...... +.+
T Consensus       436 ---------------------~~id----kS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT-~ta  489 (668)
T COG4946         436 ---------------------RLID----KSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT-PTA  489 (668)
T ss_pred             ---------------------eEec----ccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC-Ccc
Confidence                                 1111    12567799999999999999985 3    459999999877655433 444


Q ss_pred             CeeEEEEcCCCCCEEEEEe
Q 001310          845 TATSLAFNPHDNNVIAIGM  863 (1103)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~  863 (1103)
                      .-.+-||.| |+++|..-+
T Consensus       490 ~DfsPaFD~-d~ryLYfLs  507 (668)
T COG4946         490 YDFSPAFDP-DGRYLYFLS  507 (668)
T ss_pred             cccCcccCC-CCcEEEEEe
Confidence            556678888 888877654

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=99.52  E-value=1.4e-10  Score=125.22  Aligned_cols=539  Identities=10%  Similarity=0.097  Sum_probs=320.7

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      ...|++|+.... ++|+|+.||.+++-.+.+...-....    -+.+.....-...+.||++.|.-+.|+.+.+.|-++.
T Consensus        16 kL~c~~WNke~g-yIAcgG~dGlLKVlKl~t~t~d~~~~----glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSD   90 (1189)
T KOG2041|consen   16 KLHCAEWNKESG-YIACGGADGLLKVLKLGTDTTDLNKS----GLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSD   90 (1189)
T ss_pred             eEEEEEEcccCC-eEEeccccceeEEEEccccCCccccc----ccccccccchhhhhccCcceEEEEEeccccccccccC
Confidence            678999999887 69999999999999987654322100    0111222223345899999999999999999999999


Q ss_pred             CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee-EEeecCCCceEEEEee
Q 001310          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPVYSLCPH  494 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v~~~~~~  494 (1103)
                      .+|.|.||-+-.|.-.... .-....+.|.+++|..||.  .+.....||.|.|=.++..+.- +.+++.  -...+.| 
T Consensus        91 t~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~hv~w-  164 (1189)
T KOG2041|consen   91 TSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAHVLW-  164 (1189)
T ss_pred             CCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccceee-
Confidence            9999999999887644322 1234556799999999999  5777777887766554332211 112211  1123445 


Q ss_pred             ecCCccEEEEEECCCeEEEEEcCCCC-------eeE----EecCCCccEEEEEEc--------cCCCEEEEEecCCCCce
Q 001310          495 AKENIHFIFSISVDGKIKAWLYDSLG-------ARV----DYDAPGLGCTRMAYS--------ANGRRLFSCGTSKEGES  555 (1103)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~iwd~~~~~-------~~~----~~~~~~~~i~~~~~s--------~dg~~l~~~~~~~~~~~  555 (1103)
                       ++|...++.+-..|.++++|.+..-       +..    .+...+..+..+.|.        ||...|+++..    +|
T Consensus       165 -s~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~----nG  239 (1189)
T KOG2041|consen  165 -SEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA----NG  239 (1189)
T ss_pred             -cccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc----Cc
Confidence             4466677777888999999865321       111    111122234455543        57778888875    34


Q ss_pred             eEEEEeCC-CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---------CcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310          556 FLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1103)
Q Consensus       556 ~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1103)
                      .+.+..-. ...++..-.+     -.+....|+++|..++.++.+         +.|.+|. .-|..+.++..++.  .|
T Consensus       240 r~QiMR~eND~~Pvv~dtg-----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~I  311 (1189)
T KOG2041|consen  240 RMQIMRSENDPEPVVVDTG-----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--CI  311 (1189)
T ss_pred             eehhhhhcCCCCCeEEecc-----cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--ee
Confidence            45554322 2233222222     357788999999999988743         2455554 34677777776644  58


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec
Q 001310          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1103)
                      ++++|-..|-.++.+- |+.|.+=++...-....+.   ..|   .                ..+.+...|         
T Consensus       312 t~lsWEg~gLriA~Av-dsfiyfanIRP~ykWgy~e---~Tv---V----------------y~y~~~e~p---------  359 (1189)
T KOG2041|consen  312 TGLSWEGTGLRIAIAV-DSFIYFANIRPEYKWGYIE---ETV---V----------------YVYQKEELP---------  359 (1189)
T ss_pred             eeeEEcCCceEEEEEe-cceEEEEeecccceEEEee---eEE---E----------------EEEccCCCc---------
Confidence            9999988777776654 4677776655432111110   000   0                000000001         


Q ss_pred             cccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecC
Q 001310          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1103)
Q Consensus       706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  785 (1103)
                       ...|.+||..+.+....         ......++++..+--.++.-..+|.+.-++.-..          .  -++|-.
T Consensus       360 -~y~i~Fwdtk~nek~vK---------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~----------~--~~~~~l  417 (1189)
T KOG2041|consen  360 -QYGIMFWDTKTNEKTVK---------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLEN----------R--SRVYFL  417 (1189)
T ss_pred             -ceEEEEEecccChhhhh---------hhcceeehheecccEEEEeccccCCCcchhhhhc----------c--cceEEE
Confidence             12355677553322111         1123345666666555555555555543310000          0  001100


Q ss_pred             CCCCceeeccC--CCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee----------------------------
Q 001310          786 RHGPQFMVNDT--TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT----------------------------  835 (1103)
Q Consensus       786 ~~~~~~~~~~~--~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~----------------------------  835 (1103)
                           .....+  +....-..|.-.-..-++.+++.++...+.+|.....+.                            
T Consensus       418 -----~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ga~d~~  492 (1189)
T KOG2041|consen  418 -----QLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPEGAQDRT  492 (1189)
T ss_pred             -----eeecccCCcCCCCcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhcccccccCCCCccchhhce
Confidence                 000000  000011122222334467788888888888887532110                            


Q ss_pred             ----eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEE
Q 001310          836 ----ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIF  911 (1103)
Q Consensus       836 ----~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~  911 (1103)
                          ..++.+...+|.+++.+.   ++|.++-..|.|.-|.+.+........ -+..|..+++.-+...+|...--|.+.
T Consensus       493 l~ys~kt~~G~~DpICAl~~sd---k~l~vareSG~I~rySl~nv~l~n~y~-~n~~~y~~~lNCnstRlAiId~~gv~t  568 (1189)
T KOG2041|consen  493 LEYSTKTLLGSKDPICALCISD---KFLMVARESGGIYRYSLNNVVLTNSYP-VNPSIYSIKLNCNSTRLAIIDLVGVVT  568 (1189)
T ss_pred             eeccceeeccCCCcceeeeecc---eEEEEEeccCceEEEEecceeeeeccc-cCchheeEeeccCcchhhhhhhhceee
Confidence                123455667888888863   699999999999999999877665554 456789999998889999998899999


Q ss_pred             EEEcCC---CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCce
Q 001310          912 VWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELT  968 (1103)
Q Consensus       912 iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~  968 (1103)
                      +.|++-   |....  .+...+.     ..|..+.|..|+..|++- ....++|++-.+.+
T Consensus       569 f~dLd~d~~g~ql~--~~~~~er-----rDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe  622 (1189)
T KOG2041|consen  569 FQDLDYDFDGDQLK--LIYTSER-----RDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE  622 (1189)
T ss_pred             eeecccccCcceee--eeehhhh-----hhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence            998872   22111  1222221     258899999998777764 55678888765443

>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]

Probab=99.51  E-value=7.4e-14  Score=143.13  Aligned_cols=274  Identities=18%  Similarity=0.174  Sum_probs=212.2

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      ..+...+.|+.+|++ ++.|+..|.|-.+|+.++.+.....                    -...|..+.|-.+.+++|+
T Consensus       129 eFGPY~~~ytrnGrh-lllgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AV  187 (545)
T KOG1272|consen  129 EFGPYHLDYTRNGRH-LLLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAV  187 (545)
T ss_pred             ccCCeeeeecCCccE-EEecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHh
Confidence            347788999999995 6777788999999999998776432                    2357889999999999999


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  493 (1103)
                      + ...-++|||-.+-+ +.   .++.| ..|..+.|.|.--  +|++++..|.++--|+.+|+.+..+....+.+..++-
T Consensus       188 A-QK~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q  259 (545)
T KOG1272|consen  188 A-QKKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ  259 (545)
T ss_pred             h-hhceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence            8 45569999976532 33   34444 4689999999765  8999999999999999999999999888888888887


Q ss_pred             eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec
Q 001310          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1103)
                      +|-+  ..+-.|...|+|.+|.....+....+..|.++|.++++.++|+|+++.+.    |..+.|||++.-..+.++..
T Consensus       260 NP~N--aVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~t  333 (545)
T KOG1272|consen  260 NPYN--AVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRT  333 (545)
T ss_pred             CCcc--ceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeec
Confidence            6543  58889999999999999999999999999999999999999999999987    56699999998876666655


Q ss_pred             ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE-CCCCe--eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310          574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD-MNKVQ--LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1103)
Q Consensus       574 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~~--~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i  648 (1103)
                       .   .+...+++|..|  +++.+....|.||. .-.+.  .-..+-.|.-...|..+.|.|-...|-+|...|--.+
T Consensus       334 -p---~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsi  405 (545)
T KOG1272|consen  334 -P---HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSI  405 (545)
T ss_pred             -C---CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeE
Confidence             2   356777887655  55556667799994 33322  1111222222246889999998888888777664444

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=2.4e-12  Score=146.76  Aligned_cols=233  Identities=15%  Similarity=0.144  Sum_probs=152.1

Q ss_pred             cCCccceeEecccCCcCceEEEecCCCceEEEEEcC--CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1103)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  397 (1103)
                      .+......+.+..|...+...+|||||++++.+...  +..|.+||+.+++...                    +..+.+
T Consensus       189 ~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~~~g  248 (433)
T PRK04922        189 ADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VASFRG  248 (433)
T ss_pred             ECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------eccCCC
Confidence            333445556677777789999999999964444322  3469999998887543                    222344


Q ss_pred             cEEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCCc--eEEEe
Q 001310          398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKT--IKVWD  471 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~--i~iwd  471 (1103)
                      ...+++|||||+.|+.. +.+|  .|.+||+.+++..    .+..+.......+|+|||+.  ++..+ .++.  |.++|
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~--l~f~sd~~g~~~iy~~d  322 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS--IYFTSDRGGRPQIYRVA  322 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE--EEEEECCCCCceEEEEE
Confidence            45678999999988754 4444  6999999887632    34455555678899999994  44444 4444  66777


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCC---eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      +.+++... +..+.......+|+  ++|..|+..+.++   .|.+||+.++.... +. +........|+|||+.++..+
T Consensus       323 l~~g~~~~-lt~~g~~~~~~~~S--pDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~s  397 (433)
T PRK04922        323 ASGGSAER-LTFQGNYNARASVS--PDGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYAT  397 (433)
T ss_pred             CCCCCeEE-eecCCCCccCEEEC--CCCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEEE
Confidence            77766433 33333334456664  5777887765443   58999988766542 22 222345679999999998877


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      .. .+...|++++... ...+.+..+.   +.+...+|+|
T Consensus       398 ~~-~g~~~L~~~~~~g-~~~~~l~~~~---g~~~~p~wsp  432 (433)
T PRK04922        398 RE-GGRGVLAAVSTDG-RVRQRLVSAD---GEVREPAWSP  432 (433)
T ss_pred             ec-CCceEEEEEECCC-CceEEcccCC---CCCCCCccCC
Confidence            54 3466799999854 4445554433   4556666765

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.4e-12  Score=145.57  Aligned_cols=238  Identities=15%  Similarity=0.112  Sum_probs=157.2

Q ss_pred             CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCcccc
Q 001310          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQ  433 (1103)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~  433 (1103)
                      .+|.+||...+....                    +..|...+.+.+|||||+.|+..+.+   ..|.+||+.+++..  
T Consensus       184 ~~l~i~D~~g~~~~~--------------------lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~--  241 (433)
T PRK04922        184 YALQVADSDGYNPQT--------------------ILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRE--  241 (433)
T ss_pred             EEEEEECCCCCCceE--------------------eecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEE--
Confidence            468899986543221                    44577789999999999999988643   46999999887632  


Q ss_pred             ceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCe
Q 001310          434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK  510 (1103)
Q Consensus       434 ~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~  510 (1103)
                        .+..+.+...+.+|+|||+. ++++.+.++  .|++||+.+++. ..+..+.......+|+  +||..|+..+. +|.
T Consensus       242 --~l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~~~~~~~~~~~s--pDG~~l~f~sd~~g~  315 (433)
T PRK04922        242 --LVASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQL-TRLTNHFGIDTEPTWA--PDGKSIYFTSDRGGR  315 (433)
T ss_pred             --EeccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCC
Confidence              23334445568899999995 334555555  599999988875 4455555555566774  57777776664 454


Q ss_pred             --EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          511 --IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       511 --i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                        |.++++.+++... +..........+|+|||++++..... ++...|++||+.+++.. .+.. .   .......|+|
T Consensus       316 ~~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~~-~~~~~I~v~d~~~g~~~-~Lt~-~---~~~~~p~~sp  388 (433)
T PRK04922        316 PQIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHGS-GGQYRIAVMDLSTGSVR-TLTP-G---SLDESPSFAP  388 (433)
T ss_pred             ceEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEECC-CCceeEEEEECCCCCeE-ECCC-C---CCCCCceECC
Confidence              5556665554332 22233344568999999999887642 23457999999888765 3322 1   2234568999


Q ss_pred             CCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          589 AKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       589 ~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      ||++++..+.+   +.|++++... .....+..+.  ..+...+|+|
T Consensus       389 dG~~i~~~s~~~g~~~L~~~~~~g-~~~~~l~~~~--g~~~~p~wsp  432 (433)
T PRK04922        389 NGSMVLYATREGGRGVLAAVSTDG-RVRQRLVSAD--GEVREPAWSP  432 (433)
T ss_pred             CCCEEEEEEecCCceEEEEEECCC-CceEEcccCC--CCCCCCccCC
Confidence            99998886643   4688888854 4444444332  2356667776

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=99.50  E-value=2.5e-08  Score=121.39  Aligned_cols=570  Identities=11%  Similarity=0.120  Sum_probs=306.3

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEE----ECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLW----DVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iw----d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      ..+.|.++.|-+|.. -++.+..+|.|.+.    |..+...-..                    ..-...|.+++||||+
T Consensus        74 ~~~~ivs~~yl~d~~-~l~~~~~~Gdi~~~~~~~~~~~~~~E~V--------------------G~vd~GI~a~~WSPD~  132 (928)
T PF04762_consen   74 PNDKIVSFQYLADSE-SLCIALASGDIILVREDPDPDEDEIEIV--------------------GSVDSGILAASWSPDE  132 (928)
T ss_pred             CCCcEEEEEeccCCC-cEEEEECCceEEEEEccCCCCCceeEEE--------------------EEEcCcEEEEEECCCc
Confidence            346899999999998 46777888999999    6555543322                    2245799999999999


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCce---------
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---------  477 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~---------  477 (1103)
                      ..||..+.++++.+-+-. -+.+             .-..+.++  |.. ..++.|..+.=.-+.-..|+.         
T Consensus       133 Ella~vT~~~~l~~mt~~-fd~i-------------~E~~l~~~~~~~~-~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~  197 (928)
T PF04762_consen  133 ELLALVTGEGNLLLMTRD-FDPI-------------SEVPLDSDDFGES-KHVSVGWGKKETQFHGSAGKAAARQLRDPT  197 (928)
T ss_pred             CEEEEEeCCCEEEEEecc-ceEE-------------EEeecCccccCCC-ceeeeccCcccCccCcchhhhhhhhccCCC
Confidence            999999999988776422 1111             11111111  000 133333221111111111111         


Q ss_pred             -----eEEeecCCCceEEEEeeecCCccEEEEEEC---C---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310          478 -----TYSFEGHGAPVYSLCPHAKENIHFIFSISV---D---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1103)
Q Consensus       478 -----~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1103)
                           ...+. +...-..++|  .+||.++++.+.   .   ..+|||+-+ +..........+--.+++|-|.|+++++
T Consensus       198 ~~~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~  273 (928)
T PF04762_consen  198 VPKVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS  273 (928)
T ss_pred             CCccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence                 01112 2333344555  779999988774   3   469999855 4433344433444567899999999998


Q ss_pred             EecCCCCceeEEEEeCCCCeeEEEEeccc-ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCCCCC
Q 001310          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQ-LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGGGLP  623 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~  623 (1103)
                      .... .....|..|. ++|-.-..|.-.. .....|..+.|++++..|+..-.|. |.+|...+..-  .+.+..... .
T Consensus       274 ~q~~-~~~~~VvFfE-rNGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~-~  349 (928)
T PF04762_consen  274 SQRL-PDRHDVVFFE-RNGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSS-E  349 (928)
T ss_pred             EEEc-CCCcEEEEEe-cCCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCC-C
Confidence            8752 3345566676 4454444444321 1236799999999999999877555 99999887653  233333322 2


Q ss_pred             CCceEEEecC-CCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce
Q 001310          624 ENPRICFNKN-GTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1103)
Q Consensus       624 ~v~~v~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1103)
                      .+..+.|+|. ...|.+.+.+|.+..++..-..               ..++..                  .|+..-.+
T Consensus       350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v---------------~~s~~~------------------~~~D~g~v  396 (928)
T PF04762_consen  350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV---------------SRSPGS------------------SPNDNGTV  396 (928)
T ss_pred             CCCceEECCCCCCEEEEEecCCcEEEEEEEEEE---------------EecCCC------------------CccCceEE
Confidence            3456999994 4567777777777766543110               000000                  01111111


Q ss_pred             eeccccccccccccc--cCCc-cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccC
Q 001310          703 SVEAENKSEVEKPLF--ARPS-ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP  779 (1103)
Q Consensus       703 s~~~d~~i~~w~~~~--~~~~-~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  779 (1103)
                      ..-+..++++-.+..  ..|. ....+.     -...|..++|++++..+++...||.+.+|.++...............
T Consensus       397 aVIDG~~lllTpf~~a~VPPPMs~~~l~-----~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~  471 (928)
T PF04762_consen  397 AVIDGNKLLLTPFRRAVVPPPMSSYELE-----LPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSS  471 (928)
T ss_pred             EEEeCCeEEEecccccCCCchHhceEEc-----CCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhh
Confidence            111112233322221  1111 112222     34679999999999999999999999999976543211000000000


Q ss_pred             CeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC----CeEEEEEcCCce---eeEEecCCCCCeeEEEEc
Q 001310          780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG----GVISLYIVMTFK---TILTIMPPSPTATSLAFN  852 (1103)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d----g~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s  852 (1103)
                      +..     .. .....  .......+..++|..+..+++....    ..+.+++....+   ...........+..+...
T Consensus       472 ~~~-----~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  543 (928)
T PF04762_consen  472 ISL-----DS-MDISD--SELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSS  543 (928)
T ss_pred             ccc-----cc-ccccc--cccccccEEEEEEeCCCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeC
Confidence            000     00 00000  0013456788888888877776653    458888874332   233333344555566666


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCcee-EEEeccCCCCEEEEEEccCC--CEEEEEeCCCeEEEEEcCCCceeeeeeeecC
Q 001310          853 PHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDAL--NILVSSGGDAQIFVWDVDGWGIQTCRSLQTP  929 (1103)
Q Consensus       853 ~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~dg--~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~  929 (1103)
                      + +...++.-..+|.+...+...... +..|..-...+..+.+....  ..++.-+..|.+++   .. .     .+.  
T Consensus       544 ~-~~~~~~~q~~~G~v~~~~~~~~~~~~~~fp~~c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~---n~-~-----~la--  611 (928)
T PF04762_consen  544 P-DSGSLYIQTNDGKVFQLSSDGELSQIVKFPQPCPWMEVCQINGSEDKRVLFGLSSNGRLYA---NS-R-----LLA--  611 (928)
T ss_pred             C-CCcEEEEEECCCEEEEeecCCCccccccCCCCCcEEEEEEECCccceeEEEEECCCCEEEE---CC-E-----EEe--
Confidence            5 444567777899888766554322 22333222222222222221  14444445554443   21 1     111  


Q ss_pred             CCcccCCCCceEEEEcCCCCEEE-EEeCCeEEEEECC-CceEEEEeeCCCCcC-eEEEEEccCCCEEEEEecCCcEEEEe
Q 001310          930 DGVMTLAPSETHIQFHKDQTRFL-LVHETHLAIYEAE-ELTCLKQWFPISSVP-ISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus       930 ~~~~~~~~~v~~l~fs~dg~~l~-~~~d~~v~iwd~~-~~~~~~~~~~~h~~~-v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
                             ..++++++  .+.+|+ +.....++..++. ....+......+... --.+.--..|..|+++-...+=.|.-
T Consensus       612 -------~~~tSF~v--~~~~Ll~TT~~h~l~fv~L~~~~~~l~~~~~~~~~~~de~~R~VERGsriVt~vp~~~~vVLQ  682 (928)
T PF04762_consen  612 -------SNCTSFAV--TDSFLLFTTTQHTLKFVHLNSSVEDLEIPPDSPENSYDERCRRVERGSRIVTAVPSDTSVVLQ  682 (928)
T ss_pred             -------cCCceEEE--EcCEEEEEecCceEEEEECcCchhhcccccCccccccccccccCccCCEEEEEeCCCceEEEE
Confidence                   13566666  344554 4577778888887 222111111111000 00122235677888776555566677


Q ss_pred             CCCceeE
Q 001310         1007 ASNLEVQ 1013 (1103)
Q Consensus      1007 ~~~~~~~ 1013 (1103)
                      +.-|.+.
T Consensus       683 mPRGNLE  689 (928)
T PF04762_consen  683 MPRGNLE  689 (928)
T ss_pred             cCCCchh
Confidence            7777654

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.50  E-value=3.1e-12  Score=145.25  Aligned_cols=233  Identities=19%  Similarity=0.186  Sum_probs=149.8

Q ss_pred             CCccceeEecccCCcCceEEEecCCCceEEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCcc
Q 001310          321 DFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1103)
Q Consensus       321 ~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  398 (1103)
                      +......+.+..+.+.+.+.+|||||++++.+...+  ..|.+||+.+|+...                    +....+.
T Consensus       182 D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~~~g~  241 (427)
T PRK02889        182 DADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VANFKGS  241 (427)
T ss_pred             CCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eecCCCC
Confidence            334445566667778999999999999644443332  459999999887543                    2223345


Q ss_pred             EEEEEECCCCCEEEE-EeCCCeEEEEEe--cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC--C
Q 001310          399 VNRVVWSPDGSLLGV-AYSKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA--V  473 (1103)
Q Consensus       399 V~~~~~spdg~~las-~~~d~~i~iwd~--~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~--~  473 (1103)
                      +.+.+|||||+.|+. .+.++...||.+  .++. ..   .+..+...+....|+|||+. ++++...++...||.+  .
T Consensus       242 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~~~~~  316 (427)
T PRK02889        242 NSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYRMPAS  316 (427)
T ss_pred             ccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEEEECC
Confidence            668999999999875 566777666655  4433 22   34455556677899999995 2333444566666654  4


Q ss_pred             CCceeEEeecCCCceEEEEeeecCCccEEEEEECCC---eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      +++. ..+..+.......+|  +++|++|+..+.++   .|.+||+.+++......  ........|+|||+.|+..+..
T Consensus       317 ~g~~-~~lt~~g~~~~~~~~--SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~~~~  391 (427)
T PRK02889        317 GGAA-QRVTFTGSYNTSPRI--SPDGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYATQQ  391 (427)
T ss_pred             CCce-EEEecCCCCcCceEE--CCCCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEEEec
Confidence            4443 222222223334556  55778888776654   59999998776543322  2234678999999999988764


Q ss_pred             CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      + +...+++.+. ++...+.+..+.   +.+...+|+|
T Consensus       392 ~-g~~~l~~~~~-~g~~~~~l~~~~---g~~~~p~wsp  424 (427)
T PRK02889        392 G-GRSVLAAVSS-DGRIKQRLSVQG---GDVREPSWGP  424 (427)
T ss_pred             C-CCEEEEEEEC-CCCceEEeecCC---CCCCCCccCC
Confidence            3 3566778777 455555555444   5566667776

>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]

Probab=99.50  E-value=2e-12  Score=135.29  Aligned_cols=277  Identities=10%  Similarity=0.120  Sum_probs=184.0

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE-----CCCCCE
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-----SPDGSL  410 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-----spdg~~  410 (1103)
                      .+....++-.|+++.+--+  ..+.+|+...+..+.             .++.+..+.+  ....|-+|     .|++--
T Consensus       125 ~~~~~~~~~~gd~lcFnvg--~~lyv~~~~g~~~~~-------------~pi~k~~y~g--t~P~cHdfn~~~a~~~g~d  187 (636)
T KOG2394|consen  125 IVTNTNQSGKGDRLCFNVG--RELYVYSYRGAADLS-------------KPIDKREYKG--TSPTCHDFNSFTATPKGLD  187 (636)
T ss_pred             ceeeccccCCCCEEEEecC--CeEEEEEccCcchhc-------------cchhhhcccC--CCCceecccccccCCCCcc
Confidence            4556666777776554333  568888887654332             1222222332  23334444     457788


Q ss_pred             EEEEeCCCeEEEEEecCCCccccceEec--cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310          411 LGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1103)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  488 (1103)
                      |+.|-..|.|.+.|....+..+.. ...  -....|+|+.|-|.+.. .++.+-.+|.++++|..          +....
T Consensus       188 llIGf~tGqvq~idp~~~~~sklf-ne~r~i~ktsvT~ikWvpg~~~-~Fl~a~~sGnlyly~~~----------~~~~~  255 (636)
T KOG2394|consen  188 LLIGFTTGQVQLIDPINFEVSKLF-NEERLINKSSVTCIKWVPGSDS-LFLVAHASGNLYLYDKE----------IVCGA  255 (636)
T ss_pred             eEEeeccCceEEecchhhHHHHhh-hhcccccccceEEEEEEeCCCc-eEEEEEecCceEEeecc----------ccccC
Confidence            999999999999988663221111 111  12368999999998876 56667779999999851          11111


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEc-CCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLY-DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1103)
                      +.-++..-+++..+....       |.- .+...+..+......|..++|+|||++||+.+.    |++++|+|..+.++
T Consensus       256 t~p~~~~~k~~~~f~i~t-------~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSq----DGfLRvF~fdt~eL  324 (636)
T KOG2394|consen  256 TAPSYQALKDGDQFAILT-------SKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQ----DGFLRIFDFDTQEL  324 (636)
T ss_pred             CCCcccccCCCCeeEEee-------eeccccCCccceeEeccccccceeEcCCCceEEEEec----CceEEEeeccHHHH
Confidence            111221122222222211       111 111233333334458899999999999999986    78899999999988


Q ss_pred             EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec---------------
Q 001310          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---------------  632 (1103)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---------------  632 (1103)
                      +..++..-   +...|++|+|||++|++|++|.-|.||.+..++.+..-.+|  ...|..|+|.|               
T Consensus       325 lg~mkSYF---GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqGH--kSWVs~VaFDpytt~~ee~~~~~~~~  399 (636)
T KOG2394|consen  325 LGVMKSYF---GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQGH--KSWVSVVAFDPYTTSTEEWNNFSGMD  399 (636)
T ss_pred             HHHHHhhc---cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecccc--ccceeeEeeccccccccccccccccc
Confidence            88887777   88999999999999999999999999999999888776555  56788888872               


Q ss_pred             --------------------CC-------------CEEEEEECCCeEEEEEcCCCCee
Q 001310          633 --------------------NG-------------TLLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       633 --------------------~g-------------~~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                                          ++             -.+.+.+.|..+.+||+......
T Consensus       400 ~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~  457 (636)
T KOG2394|consen  400 STFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV  457 (636)
T ss_pred             ccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence                                01             24667788999999999866443

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.49  E-value=1.6e-11  Score=128.18  Aligned_cols=283  Identities=13%  Similarity=0.100  Sum_probs=189.5

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      -.-++..++|||.|+ +|++... ..|.+|.-..+..+..+                     ....|..+.|||.++||.
T Consensus        31 ~~~p~~~~~~SP~G~-~l~~~~~-~~V~~~~g~~~~~l~~~---------------------~~~~V~~~~fSP~~kYL~   87 (561)
T COG5354          31 ENWPVAYVSESPLGT-YLFSEHA-AGVECWGGPSKAKLVRF---------------------RHPDVKYLDFSPNEKYLV   87 (561)
T ss_pred             cCcchhheeecCcch-heehhhc-cceEEccccchhheeee---------------------ecCCceecccCcccceee
Confidence            344788999999998 5666544 56999998877655431                     225799999999999999


Q ss_pred             EEeCCC---------------eEEEEEecCCCccccceEecccccc--EE-EEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          413 VAYSKH---------------IVQLYAYHGGSDARQQLEIDAHVGN--VN-DLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       413 s~~~d~---------------~i~iwd~~~~~~~~~~~~l~~h~~~--v~-~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      +=+..+               .+.+||+.+|..+.   .+.+...+  .+ -+.|+-|.+  +++-. ....++|+++ +
T Consensus        88 tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~--y~ARv-v~~sl~i~e~-t  160 (561)
T COG5354          88 TWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDK--YVARV-VGSSLYIHEI-T  160 (561)
T ss_pred             eeccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecch--hhhhh-ccCeEEEEec-C
Confidence            865433               38999999987655   34444444  44 788998888  44433 2346999997 4


Q ss_pred             Ccee-EEeecC-CCceEEEEeeecCCccEEEE-----EECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          475 GSRT-YSFEGH-GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       475 ~~~~-~~~~~~-~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      +..- ..+..- ...|....++|..++..|+.     .+.++++++|.+.......+.......-..+.|.+.|++|.+-
T Consensus       161 ~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l  240 (561)
T COG5354         161 DNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVL  240 (561)
T ss_pred             CccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEE
Confidence            4322 111111 24566777777666666554     4677889999988666555443333334467888999887653


Q ss_pred             ecC-------CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeEEEEcC
Q 001310          548 GTS-------KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       548 ~~~-------~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                      ...       --++..++++++.... +.......   ++|..++|.|.++.+++  |-.+-.+.++|++.. ....+..
T Consensus       241 ~~t~~ksnKsyfgesnLyl~~~~e~~-i~V~~~~~---~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe  315 (561)
T COG5354         241 VMTHTKSNKSYFGESNLYLLRITERS-IPVEKDLK---DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPE  315 (561)
T ss_pred             EEEeeecccceeccceEEEEeecccc-cceecccc---ccceeeeecccCCceeEEecccccceeecccccc-eEEecCC
Confidence            321       1134568888887333 22222334   89999999999888766  457888999999875 3333332


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECC---CeEEEEEcCCC
Q 001310          619 GGGLPENPRICFNKNGTLLAVIANE---NRIKILETPES  654 (1103)
Q Consensus       619 ~~~~~~v~~v~~s~~g~~l~~~~~d---g~i~iw~~~~~  654 (1103)
                      .    .=+.+.|+|.++++++++-|   |.+.+|+....
T Consensus       316 ~----~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r  350 (561)
T COG5354         316 Q----KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR  350 (561)
T ss_pred             c----ccccccccCcccEEEEecCCccccceEEeccCCc
Confidence            2    23678999999999997765   66778776543

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=5.4e-12  Score=143.28  Aligned_cols=223  Identities=14%  Similarity=0.102  Sum_probs=146.1

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~  468 (1103)
                      +..+...+.+.+|||||+.||..+.+   ..|.+||+.+++...    +....+.+.+.+|+|||+. ++++.+.++...
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~  265 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ  265 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence            34577889999999999999987643   469999999886432    3334455678999999995 344667788766


Q ss_pred             EEe--CCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCeEEEEEcC--CCCeeEEecCCCccEEEEEEccCCCE
Q 001310          469 VWD--AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYD--SLGARVDYDAPGLGCTRMAYSANGRR  543 (1103)
Q Consensus       469 iwd--~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~--~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1103)
                      ||.  +.++. +..+..+........|  ++||+.|+..+. +|...+|.++  ++.... +..........+|+|||++
T Consensus       266 Iy~~d~~~~~-~~~lt~~~~~~~~~~w--SpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~-lt~~g~~~~~~~~SpDG~~  341 (427)
T PRK02889        266 IYTVNADGSG-LRRLTQSSGIDTEPFF--SPDGRSIYFTSDRGGAPQIYRMPASGGAAQR-VTFTGSYNTSPRISPDGKL  341 (427)
T ss_pred             EEEEECCCCC-cEECCCCCCCCcCeEE--cCCCCEEEEEecCCCCcEEEEEECCCCceEE-EecCCCCcCceEECCCCCE
Confidence            665  44443 5556556555566667  457777776554 4666777654  333222 2222333446789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEEcCCC
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~  620 (1103)
                      ++..+..+ +...|++||+.+++.......     .......|+||++.|+.++.++   .+++.+. ++.....+..+.
T Consensus       342 Ia~~s~~~-g~~~I~v~d~~~g~~~~lt~~-----~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~  414 (427)
T PRK02889        342 LAYISRVG-GAFKLYVQDLATGQVTALTDT-----TRDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQG  414 (427)
T ss_pred             EEEEEccC-CcEEEEEEECCCCCeEEccCC-----CCccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCC
Confidence            99776432 345799999998875443322     2235678999999998877544   3555566 455555554332


Q ss_pred             CCCCCceEEEec
Q 001310          621 GLPENPRICFNK  632 (1103)
Q Consensus       621 ~~~~v~~v~~s~  632 (1103)
                        ..+...+|+|
T Consensus       415 --g~~~~p~wsp  424 (427)
T PRK02889        415 --GDVREPSWGP  424 (427)
T ss_pred             --CCCCCCccCC
Confidence              2356677776

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.49  E-value=4.2e-11  Score=126.76  Aligned_cols=287  Identities=11%  Similarity=0.126  Sum_probs=187.8

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ......++|++|+ ++|.+ .+..+.|++..++..+.+.                     ....+.++.|||-|.+|.+=
T Consensus        35 ~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt~---------------------~~~~~~~L~fSP~g~yL~T~   91 (566)
T KOG2315|consen   35 RPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLCV---------------------ELKKTYDLLFSPKGNYLLTW   91 (566)
T ss_pred             CcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEEe---------------------ccceeeeeeecccccccccc
Confidence            3467889999998 56665 4588999999988644331                     12278899999999999863


Q ss_pred             -----eCCC-----eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          415 -----YSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       415 -----~~d~-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                           ..++     .+.+|+++++....   .+..-...-++..|+.|..   ++.--..+.+.+|++..-+.+ .-+-|
T Consensus        92 e~~~i~~~~~~~~pn~~v~~vet~~~~s---~~q~k~Q~~W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~-~~kl~  164 (566)
T KOG2315|consen   92 EPWAIYGPKNASNPNVLVYNVETGVQRS---QIQKKMQNGWVPQFSIDES---LAARLVSNEVQFYDLGSFKTI-QHKLS  164 (566)
T ss_pred             cccccccCCCCCCCceeeeeeccceehh---heehhhhcCcccccccchh---hhhhhhcceEEEEecCCccce-eeeee
Confidence                 2222     37799999953222   1222222226899999986   444444567999997763322 22346


Q ss_pred             CCceEEEEeeecCCccEEEE-----EECCCeEEEEEcCCCCeeEEec---CCCccEEEEEEccCCCEEEEE-ecC--C--
Q 001310          485 GAPVYSLCPHAKENIHFIFS-----ISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSANGRRLFSC-GTS--K--  551 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~dg~~l~~~-~~~--~--  551 (1103)
                      ...|..+.++|.+.-..+++     .+.-+.+++|.+..........   .-...-..+.|++-|.-|++. +.+  .  
T Consensus       165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn  244 (566)
T KOG2315|consen  165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN  244 (566)
T ss_pred             ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence            77788888888765556654     3566779999776322211110   011122356788777654432 221  1  


Q ss_pred             ---CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE--EeCCCcEEEEECCCCeeEEEEcCCCCCCCCc
Q 001310          552 ---EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1103)
Q Consensus       552 ---~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1103)
                         -|+..+++++++.......+..    .++|.++.|+|+++.+++  |-.--.+.|+|++ +..+..+..    .+-+
T Consensus       245 ~SYYGEq~Lyll~t~g~s~~V~L~k----~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN  315 (566)
T KOG2315|consen  245 ASYYGEQTLYLLATQGESVSVPLLK----EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRN  315 (566)
T ss_pred             ccccccceEEEEEecCceEEEecCC----CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCcc
Confidence               2456788888884333333332    479999999999987665  5677889999985 455555432    2357


Q ss_pred             eEEEecCCCEEEEEECC---CeEEEEEcCCCCeeEec
Q 001310          627 RICFNKNGTLLAVIANE---NRIKILETPESNSVDAA  660 (1103)
Q Consensus       627 ~v~~s~~g~~l~~~~~d---g~i~iw~~~~~~~~~~~  660 (1103)
                      ++-|+|.|++++.++-+   |.|.+||+.+.+.+..+
T Consensus       316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~  352 (566)
T KOG2315|consen  316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKF  352 (566)
T ss_pred             ceEECCCCCEEEEeecCCCCCceEEEeccchhhcccc
Confidence            89999999999988764   78999999887655444

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.48  E-value=3.9e-10  Score=124.19  Aligned_cols=210  Identities=13%  Similarity=0.186  Sum_probs=136.4

Q ss_pred             CeeEEEEecCCCEEEEEc--CCeEEEEEcCC-ceeeEE---e----------cCCCCCeeEEEEcCCCCCEEEEEe-CCC
Q 001310          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT---I----------MPPSPTATSLAFNPHDNNVIAIGM-DDS  866 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~~~---~----------~~~~~~i~~l~~s~~d~~~lasg~-~dg  866 (1103)
                      ....++++|++++|+++.  +|.|.++++.. +.....   +          ........++.++| +++++++.. ...
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D  166 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD  166 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence            334577777777777775  57788887765 332221   1          11235678999999 888777754 344


Q ss_pred             eEEEEEcCCce--eE--EEec-cCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcC--CCceeeeeeeecCCCcccCCCC
Q 001310          867 TILIYNARSSE--VI--SKLE-GHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPS  938 (1103)
Q Consensus       867 ~v~iwd~~~~~--~~--~~l~-~h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~  938 (1103)
                      .|.+|++....  +.  ..+. .....-+.++|+||++++.... .+++|.++++.  .+.......+............
T Consensus       167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~  246 (345)
T PF10282_consen  167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA  246 (345)
T ss_dssp             EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred             EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence            89999998654  21  2222 2345678999999999886655 57889999998  5555444444443222211125


Q ss_pred             ceEEEEcCCCCEEEEE--eCCeEEEEECC--CceE--EEEeeCCCCcCeEEEEEccCCCEEEEEe-cCCcEEEEeC--CC
Q 001310          939 ETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTC--LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEA--SN 1009 (1103)
Q Consensus       939 v~~l~fs~dg~~l~~~--~d~~v~iwd~~--~~~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~vWd~--~~ 1009 (1103)
                      ...+++||||++|.++  ..+.|.+|+++  +|..  +..+. ........++|+|||++|+++. .++.|.+|++  ++
T Consensus       247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~-~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~t  325 (345)
T PF10282_consen  247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVP-TGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDT  325 (345)
T ss_dssp             EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEE-ESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTT
T ss_pred             ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEe-CCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCC
Confidence            7889999999999996  56789999993  3333  33322 2244578999999999999887 5578999976  57


Q ss_pred             ceeEEe
Q 001310         1010 LEVQCR 1015 (1103)
Q Consensus      1010 ~~~~~~ 1015 (1103)
                      |.+...
T Consensus       326 G~l~~~  331 (345)
T PF10282_consen  326 GKLTPV  331 (345)
T ss_dssp             TEEEEE
T ss_pred             CcEEEe
Confidence            776543

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.47  E-value=7.3e-12  Score=126.38  Aligned_cols=273  Identities=13%  Similarity=0.128  Sum_probs=193.4

Q ss_pred             CcCceEEEecCCCceEEEEE-cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVG-TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasg-s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      ...|+.++|--|++.=+..+ +.|..+.....+.......    +||++.         ....+.+|..++..  ...|+
T Consensus        55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~~---------~~l~~~~I~gl~~~--dg~Li  119 (412)
T KOG3881|consen   55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAKT---------VSLGTKSIKGLKLA--DGTLI  119 (412)
T ss_pred             hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----cccccc---------cccccccccchhhc--CCEEE
Confidence            45788888877765433333 3666777777666554432    233221         33345666666654  34667


Q ss_pred             EEeCCCeEEEEEecCCCccc-cceEeccccccEEEEEEecCCCceEEEEEcCC--CceEEEeCCCCceeEEeecC-----
Q 001310          413 VAYSKHIVQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDD--KTIKVWDAVTGSRTYSFEGH-----  484 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~~~~~~~~~~-----  484 (1103)
                      +|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++.... ++++||..  ..+.|||+++.+.+.+-+.-     
T Consensus       120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L  197 (412)
T KOG3881|consen  120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL  197 (412)
T ss_pred             EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence            77889999999998554111 11123223 45666766766664 67779988  88999999998666554322     


Q ss_pred             ----CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          485 ----GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       485 ----~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                          .-.++++.|.+......+++++.-+.+++||...+.. ...+.....+++++...|+|+.++++..    .+.+..
T Consensus       198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~  273 (412)
T KOG3881|consen  198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK  273 (412)
T ss_pred             cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence                1234566676554468999999999999999987654 4477778889999999999999999865    556999


Q ss_pred             EeCCCCeeEEE-EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC
Q 001310          560 WNESEGAIKRT-YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1103)
Q Consensus       560 wd~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1103)
                      +|.+.++.... +.+..   +.++++..+|..++++++|-|..+||+|+.+.+++...-...   ..+++.+.++
T Consensus       274 FD~r~~kl~g~~~kg~t---Gsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs---~lt~il~~~~  342 (412)
T KOG3881|consen  274 FDLRGGKLLGCGLKGIT---GSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKS---RLTFILLRDD  342 (412)
T ss_pred             ecccCceeeccccCCcc---CCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhc---cccEEEecCC
Confidence            99999998877 77777   899999999999999999999999999999977765554332   2455665543

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=99.46  E-value=2e-10  Score=120.06  Aligned_cols=366  Identities=11%  Similarity=0.152  Sum_probs=224.8

Q ss_pred             EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCC
Q 001310          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1103)
Q Consensus       512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  591 (1103)
                      .+|+..+......+....-++..+++||.|.+|++....     .|.+|+...+..+..+..     ..|..+.|+|+++
T Consensus        15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~~~-----~V~~~~g~~~~~l~~~~~-----~~V~~~~fSP~~k   84 (561)
T COG5354          15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEHAA-----GVECWGGPSKAKLVRFRH-----PDVKYLDFSPNEK   84 (561)
T ss_pred             EeecCccccccccccccCcchhheeecCcchheehhhcc-----ceEEccccchhheeeeec-----CCceecccCcccc
Confidence            345544444444444456688899999999999987643     399999888776666654     4599999999999


Q ss_pred             EEEEEeCCC---------------cEEEEECCCCeeEEEEcCCCCCCCCc-eEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310          592 QILAAGDDH---------------VIKIWDMNKVQLLTTIDAGGGLPENP-RICFNKNGTLLAVIANENRIKILETPESN  655 (1103)
Q Consensus       592 ~l~~~~~dg---------------~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~g~~l~~~~~dg~i~iw~~~~~~  655 (1103)
                      +|.+-+..+               .+.+||..+|..+..+.......... -+.|+-+.+++|-.. ...+.|+++...-
T Consensus        85 YL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n~  163 (561)
T COG5354          85 YLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDNI  163 (561)
T ss_pred             eeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCcc
Confidence            999865433               49999999999999887664432233 788999888877553 3568999862211


Q ss_pred             eeEecc-ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcccc
Q 001310          656 SVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKA  734 (1103)
Q Consensus       656 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~  734 (1103)
                      ....+. .....+....++|.+..                             ..+..                      
T Consensus       164 ~~~p~~~lr~~gi~dFsisP~~n~-----------------------------~~la~----------------------  192 (561)
T COG5354         164 EEHPFKNLRPVGILDFSISPEGNH-----------------------------DELAY----------------------  192 (561)
T ss_pred             ccCchhhccccceeeEEecCCCCC-----------------------------ceEEE----------------------
Confidence            110010 11223333333322100                             00011                      


Q ss_pred             ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~  814 (1103)
                             |.|..     .+..+.+++|.++.++.                      +.+..+    -...-..+-|.+.|
T Consensus       193 -------~tPEk-----~~kpa~~~i~sIp~~s~----------------------l~tk~l----fk~~~~qLkW~~~g  234 (561)
T COG5354         193 -------WTPEK-----LNKPAMVRILSIPKNSV----------------------LVTKNL----FKVSGVQLKWQVLG  234 (561)
T ss_pred             -------Ecccc-----CCCCcEEEEEEccCCCe----------------------eeeeee----EeecccEEEEecCC
Confidence                   11110     12345555555553322                      111111    00111234444555


Q ss_pred             CEEEEE------------cCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEE--EeCCCeEEEEEcCCceeEE
Q 001310          815 AYLFSA------------SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI--GMDDSTILIYNARSSEVIS  880 (1103)
Q Consensus       815 ~~l~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las--g~~dg~v~iwd~~~~~~~~  880 (1103)
                      ++|+.-            ++..+.|+++......-. ..-.++|...+|.| .++.+++  |..+-.+.++|+... ...
T Consensus       235 ~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~-~~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~  311 (561)
T COG5354         235 KYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVE-KDLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRF  311 (561)
T ss_pred             ceEEEEEEEeeecccceeccceEEEEeeccccccee-ccccccceeeeecc-cCCceeEEecccccceeecccccc-eEE
Confidence            554432            134588888874433333 25578999999999 5555544  357789999998854 444


Q ss_pred             EeccCCCCEEEEEEccCCCEEEEEeCC---CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE---
Q 001310          881 KLEGHSKRVTGLVFSDALNILVSSGGD---AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV---  954 (1103)
Q Consensus       881 ~l~~h~~~V~~l~~s~dg~~l~s~s~d---g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~---  954 (1103)
                      .+.  ...=..+.|||.+++++.++-|   |.|-+||..+.-.    ++....+.     ..+.+.|||||.++.+.   
T Consensus       312 ~~P--e~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~----~~~~~~~~-----n~s~~~wspd~qF~~~~~ts  380 (561)
T COG5354         312 YFP--EQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK----VAGAFNGL-----NTSYCDWSPDGQFYDTDTTS  380 (561)
T ss_pred             ecC--CcccccccccCcccEEEEecCCccccceEEeccCCceE----EEEEeecC-----CceEeeccCCceEEEecCCC
Confidence            333  3344568899999999998876   5699999987432    22222221     24567899999999873   


Q ss_pred             ----eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310          955 ----HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus       955 ----~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
                          .|..+.|||+..... .        ..+.+.|.|.|++.-+.+.+.
T Consensus       381 ~k~~~Dn~i~l~~v~g~~~-f--------el~~~~W~p~~~~~ttsSs~~  421 (561)
T COG5354         381 EKLRVDNSIKLWDVYGAKV-F--------ELTNITWDPSGQYVTTSSSCP  421 (561)
T ss_pred             cccccCcceEEEEecCchh-h--------hhhhccccCCcccceeeccCC
Confidence                367899999873222 1        456778888888877776654

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.46  E-value=1.1e-10  Score=122.71  Aligned_cols=327  Identities=13%  Similarity=0.181  Sum_probs=204.5

Q ss_pred             cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-----------CC
Q 001310          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----------DD  599 (1103)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----------~d  599 (1103)
                      .-+-+.|||.|.||++-...|     |.+|--.+-..++.|..     ..|.-+.|||+.++|++-+           +.
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-----I~lWGG~~f~r~~RF~H-----p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~  281 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-----IALWGGESFDRIQRFYH-----PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEG  281 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-----eeeecCccHHHHHhccC-----CCceeeecCCccceEEEecCCccccCcccCCC
Confidence            345689999999999987543     89998776666666654     3588999999999999855           22


Q ss_pred             CcEEEEECCCCeeEEEEcCCCC-CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310          600 HVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1103)
Q Consensus       600 g~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  678 (1103)
                      ..++|||+.+|...+.+..... ...-.-+.||.|++++|.-.. ..|.||+...-.++....                 
T Consensus       282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Ks-----------------  343 (698)
T KOG2314|consen  282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKS-----------------  343 (698)
T ss_pred             ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccc-----------------
Confidence            5799999999999988876322 223456789999999998777 468888776432221110                 


Q ss_pred             eeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceE
Q 001310          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  758 (1103)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i  758 (1103)
                                            +                               ....|..+.|+|.++.|+--...   
T Consensus       344 ----------------------l-------------------------------ki~gIr~FswsP~~~llAYwtpe---  367 (698)
T KOG2314|consen  344 ----------------------L-------------------------------KISGIRDFSWSPTSNLLAYWTPE---  367 (698)
T ss_pred             ----------------------c-------------------------------CCccccCcccCCCcceEEEEccc---
Confidence                                  0                               12335555666665533322111   


Q ss_pred             EEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEE
Q 001310          759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT  838 (1103)
Q Consensus       759 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~  838 (1103)
                                                  +..           ..                    ..+.+..+.+++.+++
T Consensus       368 ----------------------------~~~-----------~p--------------------arvtL~evPs~~~iRt  388 (698)
T KOG2314|consen  368 ----------------------------TNN-----------IP--------------------ARVTLMEVPSKREIRT  388 (698)
T ss_pred             ----------------------------ccC-----------Cc--------------------ceEEEEecCccceeee
Confidence                                        110           00                    1233444444444444


Q ss_pred             ecCCCCCeeEEEEcCCCCCEEEEEe----------CCCeEEEEEcCCcee-EEEeccCCCCEEEEEEccCCCEEEEEeC-
Q 001310          839 IMPPSPTATSLAFNPHDNNVIAIGM----------DDSTILIYNARSSEV-ISKLEGHSKRVTGLVFSDALNILVSSGG-  906 (1103)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~----------~dg~v~iwd~~~~~~-~~~l~~h~~~V~~l~~s~dg~~l~s~s~-  906 (1103)
                      ..-+.-.-..|-|.. .|.+|+.--          .=..+.|+.+..... +..+. -...|...+|-|.|..+++.+. 
T Consensus       389 ~nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve-lke~vi~FaWEP~gdkF~vi~g~  466 (698)
T KOG2314|consen  389 KNLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE-LKESVIAFAWEPHGDKFAVISGN  466 (698)
T ss_pred             ccceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee-cchheeeeeeccCCCeEEEEEcc
Confidence            433333333455555 555665421          112455666654432 22222 4577899999999998887654 


Q ss_pred             --CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE----eCCeEEEEECCCceEEEEeeCCCCcC
Q 001310          907 --DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELTCLKQWFPISSVP  980 (1103)
Q Consensus       907 --dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~----~d~~v~iwd~~~~~~~~~~~~~h~~~  980 (1103)
                        ..++.+|.+++.. .....+..+...     ....+.|||.|++++++    ..|.+..+|+.-..+...-...| ..
T Consensus       467 ~~k~tvsfY~~e~~~-~~~~lVk~~dk~-----~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~  539 (698)
T KOG2314|consen  467 TVKNTVSFYAVETNI-KKPSLVKELDKK-----FANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FA  539 (698)
T ss_pred             ccccceeEEEeecCC-Cchhhhhhhccc-----ccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cc
Confidence              3568889888521 122334444332     35789999999999984    46789999998544333323334 35


Q ss_pred             eEEEEEccCCCEEEEEecC------CcEEEEeCCC
Q 001310          981 ISQATFSCDCRMVFTSFVD------GTLSIHEASN 1009 (1103)
Q Consensus       981 v~~l~fs~dg~~l~t~~~d------g~v~vWd~~~ 1009 (1103)
                      .+.+.|.|.|+|++|++.-      .--++|++..
T Consensus       540 at~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG  574 (698)
T KOG2314|consen  540 ATEVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG  574 (698)
T ss_pred             cccceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence            6778999999999998753      3455666554

>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]

Probab=99.45  E-value=1.1e-10  Score=123.56  Aligned_cols=336  Identities=13%  Similarity=0.135  Sum_probs=210.2

Q ss_pred             CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-----eC-----
Q 001310          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-----GD-----  598 (1103)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-----~~-----  598 (1103)
                      ..++...++|++|++++.+.     +..+.|++..++..+.....     ..+..+.|+|.++++.+-     ..     
T Consensus        34 ~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~-----~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~  103 (566)
T KOG2315|consen   34 SRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVEL-----KKTYDLLFSPKGNYLLTWEPWAIYGPKNAS  103 (566)
T ss_pred             CCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEecc-----ceeeeeeecccccccccccccccccCCCCC
Confidence            34577889999999999886     34588999888864333332     258899999999988762     12     


Q ss_pred             CCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310          599 DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1103)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  678 (1103)
                      .-.+.+|+++++.....+......  -++..|++|..+.+- -..+.+.+|+..+-+.. ..+.+...++.+.++|....
T Consensus       104 ~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~ar-lv~nev~f~~~~~f~~~-~~kl~~~~i~~f~lSpgp~~  179 (566)
T KOG2315|consen  104 NPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAAR-LVSNEVQFYDLGSFKTI-QHKLSVSGITMLSLSPGPEP  179 (566)
T ss_pred             CCceeeeeeccceehhheehhhhc--Ccccccccchhhhhh-hhcceEEEEecCCccce-eeeeeccceeeEEecCCCCC
Confidence            235779999996655555443222  268889988754433 33468999998874322 22345666777777764221


Q ss_pred             eeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceE
Q 001310          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH  758 (1103)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i  758 (1103)
                      .       .+++.        .....+.-..+++|..............   .--...=..+.|++-|.-|++....   
T Consensus       180 ~-------~vAvy--------vPe~kGaPa~vri~~~~~~~~~~~~a~k---sFFkadkvqm~WN~~gt~LLvLast---  238 (566)
T KOG2315|consen  180 P-------FVAVY--------VPEKKGAPASVRIYKYPEEGQHQPVANK---SFFKADKVQMKWNKLGTALLVLAST---  238 (566)
T ss_pred             c-------eEEEE--------ccCCCCCCcEEEEeccccccccchhhhc---cccccceeEEEeccCCceEEEEEEE---
Confidence            1       11110        0112334456788876522211110000   0011222345677766654433211   


Q ss_pred             EEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc---CCeEEEEEcCCcee
Q 001310          759 LMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKT  835 (1103)
Q Consensus       759 ~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~  835 (1103)
                         |++....    .--...++.+.++....+..  .+   ...++|.++.|+|+++-+++..   -.++.|+|+. +..
T Consensus       239 ---dVDktn~----SYYGEq~Lyll~t~g~s~~V--~L---~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~  305 (566)
T KOG2315|consen  239 ---DVDKTNA----SYYGEQTLYLLATQGESVSV--PL---LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKP  305 (566)
T ss_pred             ---eecCCCc----cccccceEEEEEecCceEEE--ec---CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCE
Confidence               0111000    00111234444444222222  22   2578999999999999888776   3789999986 555


Q ss_pred             eEEecCCCCCeeEEEEcCCCCCEEEEEeCC---CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeC------
Q 001310          836 ILTIMPPSPTATSLAFNPHDNNVIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG------  906 (1103)
Q Consensus       836 ~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------  906 (1103)
                      +..+  ..++-.++-|+| .|++|+.++-+   |.+.|||+.+.+++..+..-..  +-+.|+|||.+++|+..      
T Consensus       306 v~df--~egpRN~~~fnp-~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t--t~~eW~PdGe~flTATTaPRlrv  380 (566)
T KOG2315|consen  306 VFDF--PEGPRNTAFFNP-HGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT--TVFEWSPDGEYFLTATTAPRLRV  380 (566)
T ss_pred             eEeC--CCCCccceEECC-CCCEEEEeecCCCCCceEEEeccchhhccccccCCc--eEEEEcCCCcEEEEEeccccEEe
Confidence            5555  466778899999 88888887765   7999999999999988886543  45799999999999875      


Q ss_pred             CCeEEEEEcCC
Q 001310          907 DAQIFVWDVDG  917 (1103)
Q Consensus       907 dg~I~iwd~~~  917 (1103)
                      |..++||+...
T Consensus       381 dNg~KiwhytG  391 (566)
T KOG2315|consen  381 DNGIKIWHYTG  391 (566)
T ss_pred             cCCeEEEEecC
Confidence            67799999986

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=1.3e-11  Score=141.16  Aligned_cols=233  Identities=15%  Similarity=0.100  Sum_probs=153.3

Q ss_pred             cCCccceeEecccCCcCceEEEecCCCceEEEEEc--CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGT--NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1103)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs--~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  397 (1103)
                      .+......+.+..|...+.+.+|||||++++.+..  .+..|.+||+.+|+...                    +..+.+
T Consensus       187 ~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~~~g  246 (435)
T PRK05137        187 MDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGNFPG  246 (435)
T ss_pred             ECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eecCCC
Confidence            33345556777888889999999999996544432  24689999999886542                    334566


Q ss_pred             cEEEEEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCC--ceEEEe
Q 001310          398 SVNRVVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWD  471 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~--~i~iwd  471 (1103)
                      .+.+.+|||||+.|+.. +.++  .|.+||+.+++..    .+..+........|+|||+.  ++..+ .++  .|++||
T Consensus       247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy~~d  320 (435)
T PRK05137        247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLYVMN  320 (435)
T ss_pred             cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEEEEE
Confidence            77889999999988754 4444  4778888877532    35556666778999999995  44443 333  688889


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      +.+++. ..+..+...+....|+  ++|..|+..+.+   ..|.+||+...... .+.. ...+..+.|+|||+.|+..+
T Consensus       321 ~~g~~~-~~lt~~~~~~~~~~~S--pdG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~~~  395 (435)
T PRK05137        321 ADGSNP-RRISFGGGRYSTPVWS--PRGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMFFR  395 (435)
T ss_pred             CCCCCe-EEeecCCCcccCeEEC--CCCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEEEE
Confidence            776654 3444344555556664  577788776543   35778887654432 2222 23467789999999998776


Q ss_pred             cCCCCc--eeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          549 TSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       549 ~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      ......  ..++++|+..+.. +.+.. .   +.+...+|+|
T Consensus       396 ~~~~~~~~~~L~~~dl~g~~~-~~l~~-~---~~~~~p~Wsp  432 (435)
T PRK05137        396 QTPGSGGAPKLYTVDLTGRNE-REVPT-P---GDASDPAWSP  432 (435)
T ss_pred             ccCCCCCcceEEEEECCCCce-EEccC-C---CCccCcccCC
Confidence            533221  4688889876554 33332 2   3355556665

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.44  E-value=1.6e-09  Score=119.30  Aligned_cols=298  Identities=13%  Similarity=0.216  Sum_probs=179.2

Q ss_pred             ceeEEEEeC--CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC----CCcEEEEECCCC--ee--EEEEcCCCCCC
Q 001310          554 ESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD----DHVIKIWDMNKV--QL--LTTIDAGGGLP  623 (1103)
Q Consensus       554 ~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg~i~iwd~~~~--~~--~~~~~~~~~~~  623 (1103)
                      .+-|++|++  .++++...-....  ......++++|++++|++..+    ++.|..|++...  ++  +......+  .
T Consensus        12 ~~gI~~~~~d~~~g~l~~~~~~~~--~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g--~   87 (345)
T PF10282_consen   12 GGGIYVFRFDEETGTLTLVQTVAE--GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGG--S   87 (345)
T ss_dssp             STEEEEEEEETTTTEEEEEEEEEE--SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESS--S
T ss_pred             CCcEEEEEEcCCCCCceEeeeecC--CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCC--C
Confidence            345666666  5665543322111  245677889999999999876    578988887763  33  33333222  2


Q ss_pred             CCceEEEecCCCEEEEEEC-CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce
Q 001310          624 ENPRICFNKNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1103)
                      ....++++|++++|+++.. +|.+.++++.....+....                                         
T Consensus        88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~-----------------------------------------  126 (345)
T PF10282_consen   88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV-----------------------------------------  126 (345)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE-----------------------------------------
T ss_pred             CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee-----------------------------------------
Confidence            3467999999999998874 7889998887532111100                                         


Q ss_pred             eeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCee
Q 001310          703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL  782 (1103)
Q Consensus       703 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  782 (1103)
                                                          .+ +...|.     +.+                           
T Consensus       127 ------------------------------------~~-~~~~g~-----g~~---------------------------  137 (345)
T PF10282_consen  127 ------------------------------------QT-VRHEGS-----GPN---------------------------  137 (345)
T ss_dssp             ------------------------------------EE-EESEEE-----ESS---------------------------
T ss_pred             ------------------------------------ee-cccCCC-----CCc---------------------------
Confidence                                                00 000000     000                           


Q ss_pred             ecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCce--e--eEEec-CCCCCeeEEEEcCCC
Q 001310          783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFK--T--ILTIM-PPSPTATSLAFNPHD  855 (1103)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~--~--~~~~~-~~~~~i~~l~~s~~d  855 (1103)
                          .          .........++.++|||+++++..  .+.|.+|++....  .  ...+. .....-+.++|+| +
T Consensus       138 ----~----------~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~p-d  202 (345)
T PF10282_consen  138 ----P----------DRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSP-D  202 (345)
T ss_dssp             ----T----------TTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-T-T
T ss_pred             ----c----------cccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcC-C
Confidence                0          001234556788888888888775  4678888887544  2  22232 3446789999999 7


Q ss_pred             CCEEEEE-eCCCeEEEEEcC--Cce--eEEEecc----C--CCCEEEEEEccCCCEEEEEe-CCCeEEEEEcC--CCcee
Q 001310          856 NNVIAIG-MDDSTILIYNAR--SSE--VISKLEG----H--SKRVTGLVFSDALNILVSSG-GDAQIFVWDVD--GWGIQ  921 (1103)
Q Consensus       856 ~~~lasg-~~dg~v~iwd~~--~~~--~~~~l~~----h--~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~--~~~~~  921 (1103)
                      ++++++. -.+++|.++++.  +++  .+..+..    .  ......|+++|||++|.++. .++.|.+++++  ++++.
T Consensus       203 g~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~  282 (345)
T PF10282_consen  203 GKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLT  282 (345)
T ss_dssp             SSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEE
T ss_pred             cCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceE
Confidence            7766555 457789999988  443  2222221    1  12578899999999877655 56789999994  35554


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEEC--CCceEEEEeeCCCCcCeEEEEE
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEA--EELTCLKQWFPISSVPISQATF  986 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~--~~~~~~~~~~~~h~~~v~~l~f  986 (1103)
                      ....+... +.     ..+.++|+|+|++|+++  .++.|.+|++  ++|.+...-....-....+|.|
T Consensus       283 ~~~~~~~~-G~-----~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ci~f  345 (345)
T PF10282_consen  283 LVQTVPTG-GK-----FPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPVCIVF  345 (345)
T ss_dssp             EEEEEEES-SS-----SEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEEEEEE
T ss_pred             EEEEEeCC-CC-----CccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCEEEeC
Confidence            44444332 21     36899999999999996  5678888866  5776554321112344556655

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.43  E-value=1.3e-09  Score=115.84  Aligned_cols=247  Identities=10%  Similarity=0.053  Sum_probs=156.4

Q ss_pred             EecCCcEEEEeec----------CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCC---CCCeeEE
Q 001310          742 YNNGGQAIFALAS----------NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS---QEAVPCF  808 (1103)
Q Consensus       742 ~s~~g~~l~~~~~----------dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~l  808 (1103)
                      +||||+.++++..          +..|.+||..                      +.+......++...+   ......+
T Consensus        53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~----------------------t~~~~~~i~~p~~p~~~~~~~~~~~  110 (352)
T TIGR02658        53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ----------------------THLPIADIELPEGPRFLVGTYPWMT  110 (352)
T ss_pred             ECCCCCEEEEEeccccccccCCCCCEEEEEECc----------------------cCcEEeEEccCCCchhhccCccceE
Confidence            7888887776665          4566666644                      444343333322111   2344578


Q ss_pred             EEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeE----E
Q 001310          809 ALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVI----S  880 (1103)
Q Consensus       809 ~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~----~  880 (1103)
                      +++|||+++.+..   +..|.+.|+.+++.+.++.... ...-...++ +. ++ +.+.||......+.+ |+..    .
T Consensus       111 ~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~  186 (352)
T TIGR02658       111 SLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIKPTE  186 (352)
T ss_pred             EECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEeeee
Confidence            9999999999876   5889999999999999887533 222223332 22 22 223445444433332 2211    1


Q ss_pred             EeccCCCCEE-EEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc----CCCCceEEEEcCCCCEEEEE
Q 001310          881 KLEGHSKRVT-GLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT----LAPSETHIQFHKDQTRFLLV  954 (1103)
Q Consensus       881 ~l~~h~~~V~-~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~----~~~~v~~l~fs~dg~~l~~~  954 (1103)
                      .+.+...++. .-.|++ ||+++..... |+|.+-|+..........+........    ..+...-++++|||+.+.+.
T Consensus       187 vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~  265 (352)
T TIGR02658       187 VFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLL  265 (352)
T ss_pred             eecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEE
Confidence            1111001110 014566 8887776666 999999987655444333333211100    11345559999999998883


Q ss_pred             e---C--------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCceeEEeec
Q 001310          955 H---E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       955 ~---d--------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      .   .        +.|.++|+.+++.+..+..+  ..+..++||+|++ +|++.. .++.|.+.|+.+++.+.++.
T Consensus       266 ~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~  339 (352)
T TIGR02658       266 ADQRAKWTHKTASRFLFVVDAKTGKRLRKIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVN  339 (352)
T ss_pred             ecCCccccccCCCCEEEEEECCCCeEEEEEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence            2   1        57999999999999987764  4899999999999 777666 67889999999999998884

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2321 consensus WD40 repeat protein [General function prediction only]

Probab=99.40  E-value=6.6e-11  Score=124.99  Aligned_cols=285  Identities=15%  Similarity=0.171  Sum_probs=190.8

Q ss_pred             cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC-CceEEEEeeecCCccEEEEEECCCeEEEEEcC
Q 001310          439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGKIKAWLYD  517 (1103)
Q Consensus       439 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~  517 (1103)
                      +|...-+.|..+|||++ ++++|...-.|++||+..-...  |..|. ..+..+.+. +.|-..++.-..|.+|.+..--
T Consensus        49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiL-sDD~SK~v~L~~DR~IefHak~  124 (703)
T KOG2321|consen   49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEIL-SDDYSKSVFLQNDRTIEFHAKY  124 (703)
T ss_pred             CCccccceeEecCCCcE-EEEecccCCceEEEEcccceee--eeecccccceeEEEe-ccchhhheEeecCceeeehhhc
Confidence            46677789999999997 7888888999999998765543  33332 223222221 2232334444556655543211


Q ss_pred             CCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe
Q 001310          518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  597 (1103)
Q Consensus       518 ~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  597 (1103)
                      .  ....... ...-..++++.-..-|++++...    .|+-+++..|+.+..+....   +.++++..++....|++|+
T Consensus       125 G--~hy~~RI-P~~GRDm~y~~~scDly~~gsg~----evYRlNLEqGrfL~P~~~~~---~~lN~v~in~~hgLla~Gt  194 (703)
T KOG2321|consen  125 G--RHYRTRI-PKFGRDMKYHKPSCDLYLVGSGS----EVYRLNLEQGRFLNPFETDS---GELNVVSINEEHGLLACGT  194 (703)
T ss_pred             C--eeeeeec-CcCCccccccCCCccEEEeecCc----ceEEEEcccccccccccccc---ccceeeeecCccceEEecc
Confidence            1  1111111 11223445544333344443322    29999999999999998876   8899999999999999999


Q ss_pred             CCCcEEEEECCCCeeEEEEcCCC---------CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEec-cccccce
Q 001310          598 DDHVIKIWDMNKVQLLTTIDAGG---------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA-GVLSDNL  667 (1103)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~~~~i  667 (1103)
                      .+|.|..||.++...+.++....         ..+.|+++.|+.+|-.+++|+.+|.+.|||+.+.+++..- .+..-+|
T Consensus       195 ~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi  274 (703)
T KOG2321|consen  195 EDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPI  274 (703)
T ss_pred             cCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccce
Confidence            99999999999887776664332         2345899999999999999999999999999988766433 3444556


Q ss_pred             eeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc
Q 001310          668 RKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ  747 (1103)
Q Consensus       668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~  747 (1103)
                      ..+.|.+.                     ++.-.+...+...+++||-.++++.....       ....+..+++-|++.
T Consensus       275 ~~l~~~~~---------------------~~q~~v~S~Dk~~~kiWd~~~Gk~~asiE-------pt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  275 KKLDWQDT---------------------DQQNKVVSMDKRILKIWDECTGKPMASIE-------PTSDLNDFCFVPGSG  326 (703)
T ss_pred             eeeccccc---------------------CCCceEEecchHHhhhcccccCCceeecc-------ccCCcCceeeecCCc
Confidence            66666531                     22223333344679999988765543221       345688899999999


Q ss_pred             EEEEeecCceEEEeecCC
Q 001310          748 AIFALASNGVHLMWRWPR  765 (1103)
Q Consensus       748 ~l~~~~~dg~i~vw~~~~  765 (1103)
                      .++++..++.+..|=++.
T Consensus       327 m~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIPS  344 (703)
T ss_pred             eEEEecCCCcceeEEccc
Confidence            999998888777766554

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.40  E-value=4.4e-11  Score=118.46  Aligned_cols=155  Identities=12%  Similarity=0.185  Sum_probs=108.6

Q ss_pred             eEEEEcCCCCCEEEEEeC----------CCeEEEEEcCC-ceeEEEecc-CCCCEEEEEEccCCCEEEEE--eCCCeEEE
Q 001310          847 TSLAFNPHDNNVIAIGMD----------DSTILIYNARS-SEVISKLEG-HSKRVTGLVFSDALNILVSS--GGDAQIFV  912 (1103)
Q Consensus       847 ~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~-~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~--s~dg~I~i  912 (1103)
                      ..+.|+| .|.+|++-..          -|...+|.++. +.....+.- ..++|.+++|+|+|+.+|+.  ..++.|.+
T Consensus         9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            4578888 6666665332          13455555532 233444432 44579999999999987655  35679999


Q ss_pred             EEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe----CCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc
Q 001310          913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAEELTCLKQWFPISSVPISQATFSC  988 (1103)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~  988 (1103)
                      ||++...      +.....     ..+..+.|||+|++|+++.    .|.+.+||+.+.+.+...  .| ..++.++|||
T Consensus        88 yd~~~~~------i~~~~~-----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--~~-~~~t~~~WsP  153 (194)
T PF08662_consen   88 YDVKGKK------IFSFGT-----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTF--EH-SDATDVEWSP  153 (194)
T ss_pred             EcCcccE------eEeecC-----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeecc--cc-CcEEEEEEcC
Confidence            9997322      222221     1467899999999999852    467999999999888763  23 3578999999


Q ss_pred             CCCEEEEEec------CCcEEEEeCCCceeEEeec
Q 001310          989 DCRMVFTSFV------DGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       989 dg~~l~t~~~------dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ||+++++++.      |..++||++. |+++.+..
T Consensus       154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~  187 (194)
T PF08662_consen  154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP  187 (194)
T ss_pred             CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence            9999998874      7889999985 66665544

>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]

Probab=99.39  E-value=1.8e-10  Score=121.30  Aligned_cols=325  Identities=13%  Similarity=0.179  Sum_probs=196.3

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-----------Cc
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----------KT  466 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-----------~~  466 (1103)
                      .-+.+.|||-|.||++--..| |.+|--.+-..++   .+ .|. .|..+.|||..+  +|+|-+..           ..
T Consensus       212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f~r~~---RF-~Hp-~Vq~idfSP~Ek--YLVT~s~~p~~~~~~d~e~~~  283 (698)
T KOG2314|consen  212 TETYVRWSPKGTYLVTFHKQG-IALWGGESFDRIQ---RF-YHP-GVQFIDFSPNEK--YLVTYSPEPIIVEEDDNEGQQ  283 (698)
T ss_pred             eeeeEEecCCceEEEEEeccc-eeeecCccHHHHH---hc-cCC-CceeeecCCccc--eEEEecCCccccCcccCCCce
Confidence            346799999999999987777 9999755433333   33 365 488999999999  78887642           35


Q ss_pred             eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1103)
Q Consensus       467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1103)
                      ++|||+.+|...+.|....                       +....|                  .-+.||.|++++|.
T Consensus       284 l~IWDI~tG~lkrsF~~~~-----------------------~~~~~W------------------P~frWS~DdKy~Ar  322 (698)
T KOG2314|consen  284 LIIWDIATGLLKRSFPVIK-----------------------SPYLKW------------------PIFRWSHDDKYFAR  322 (698)
T ss_pred             EEEEEccccchhcceeccC-----------------------CCcccc------------------ceEEeccCCceeEE
Confidence            7777777777766654210                       111112                  12578999999988


Q ss_pred             EecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC-----CCcEEEEECCCCeeEEEEcCCCC
Q 001310          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-----DHVIKIWDMNKVQLLTTIDAGGG  621 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~  621 (1103)
                      ...     ..|.||+..+-.++.   .....-..|....|+|.++.|+.-..     -..+.+-.+.+++.+++...+.-
T Consensus       323 m~~-----~sisIyEtpsf~lld---~Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV  394 (698)
T KOG2314|consen  323 MTG-----NSISIYETPSFMLLD---KKSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV  394 (698)
T ss_pred             ecc-----ceEEEEecCceeeec---ccccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence            764     238899877644332   22222367888999999888776442     23466777777777776654421


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1103)
Q Consensus       622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1103)
                        .-..+-|-.+|.+|++--+-.       ...+ +      .+..                                  
T Consensus       395 --sDckLhWQk~gdyLcvkvdR~-------tK~~-~------~g~f----------------------------------  424 (698)
T KOG2314|consen  395 --SDCKLHWQKSGDYLCVKVDRH-------TKSK-V------KGQF----------------------------------  424 (698)
T ss_pred             --eccEEEeccCCcEEEEEEEee-------cccc-c------cceE----------------------------------
Confidence              123466777888887543210       0000 0      0000                                  


Q ss_pred             eeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC---ceEEEeecCCCcccccccccccc
Q 001310          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKV  778 (1103)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~  778 (1103)
                            ..+.++.+...+ .....     ..-...|..++|-|.|..+++.+.+   .++.+|.+....           
T Consensus       425 ------~n~eIfrireKd-Ipve~-----velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~-----------  481 (698)
T KOG2314|consen  425 ------SNLEIFRIREKD-IPVEV-----VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNI-----------  481 (698)
T ss_pred             ------eeEEEEEeeccC-CCcee-----eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCC-----------
Confidence                  001111111000 00000     1124568889999999988877654   445555543210           


Q ss_pred             CCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc----CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCC
Q 001310          779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH  854 (1103)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~  854 (1103)
                               +...+...+    .....+.+.|+|.|++++.+.    .|.+.++|+.-..+..+-.......+.+.|.| 
T Consensus       482 ---------~~~~lVk~~----dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~at~veWDP-  547 (698)
T KOG2314|consen  482 ---------KKPSLVKEL----DKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFAATEVEWDP-  547 (698)
T ss_pred             ---------Cchhhhhhh----cccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccccccceECC-
Confidence                     000111111    234567789999999999885    47899999975344333333445678899999 


Q ss_pred             CCCEEEEEeCCC
Q 001310          855 DNNVIAIGMDDS  866 (1103)
Q Consensus       855 d~~~lasg~~dg  866 (1103)
                      .|+|+++++.-.
T Consensus       548 tGRYvvT~ss~w  559 (698)
T KOG2314|consen  548 TGRYVVTSSSSW  559 (698)
T ss_pred             CCCEEEEeeehh
Confidence            999999988543

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.39  E-value=5e-11  Score=118.17  Aligned_cols=338  Identities=14%  Similarity=0.200  Sum_probs=203.0

Q ss_pred             eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~  645 (1103)
                      .++.++|+.   ..++....-|..+-+++.+.|.+++||-- +.++.-..+.... ..++.++.+.++...|++|-..|+
T Consensus        16 ll~~~eG~~---d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~m-P~~~~~~~y~~e~~~L~vg~~ngt   91 (404)
T KOG1409|consen   16 LLSKIEGSQ---DDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYM-PSPCSAMEYVSESRRLYVGQDNGT   91 (404)
T ss_pred             hhhhhcCch---hhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhC-CCCceEeeeeccceEEEEEEecce
Confidence            455667776   77888778888889999999999999953 4454444443322 246789999999999999999999


Q ss_pred             EEEEEcCCC----CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCc
Q 001310          646 IKILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS  721 (1103)
Q Consensus       646 i~iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~  721 (1103)
                      +.-+.+...    ...+....|...+..+-++.                      ...++++.+.|..+. |.       
T Consensus        92 vtefs~sedfnkm~~~r~~~~h~~~v~~~if~~----------------------~~e~V~s~~~dk~~~-~h-------  141 (404)
T KOG1409|consen   92 VTEFALSEDFNKMTFLKDYLAHQARVSAIVFSL----------------------THEWVLSTGKDKQFA-WH-------  141 (404)
T ss_pred             EEEEEhhhhhhhcchhhhhhhhhcceeeEEecC----------------------CceeEEEeccccceE-EE-------
Confidence            988876532    33334445555555555542                      122233333222110 00       


Q ss_pred             cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCC
Q 001310          722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS  801 (1103)
Q Consensus       722 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (1103)
                                         . +..|+.+     .+.+.                                          
T Consensus       142 -------------------c-~e~~~~l-----g~Y~~------------------------------------------  154 (404)
T KOG1409|consen  142 -------------------C-TESGNRL-----GGYNF------------------------------------------  154 (404)
T ss_pred             -------------------e-eccCCcc-----cceEe------------------------------------------
Confidence                               0 0000000     00000                                          


Q ss_pred             CCCeeEEEEecCCCEEEEEc-CCeEEEE--EcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001310          802 QEAVPCFALSKNDAYLFSAS-GGVISLY--IVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~-dg~i~iw--d~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1103)
                      ....+++.+.-.  +...|. .|.|.+-  ..+....+.++.+|.+.+++++|.| ..++|.+|..|..+.+||+.-.+-
T Consensus       155 ~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g  231 (404)
T KOG1409|consen  155 ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKG  231 (404)
T ss_pred             eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcc
Confidence            000000000000  111221 2333222  2334567788999999999999999 889999999999999999986543


Q ss_pred             -EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC-------------------------Cc
Q 001310          879 -ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------------------------GV  932 (1103)
Q Consensus       879 -~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-------------------------~~  932 (1103)
                       ...+.+|.+.|..+..-+--+.|.+++.||.|.+|+.+........-+..-.                         .|
T Consensus       232 ~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~  311 (404)
T KOG1409|consen  232 TAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHH  311 (404)
T ss_pred             eeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhh
Confidence             4677889999999998888899999999999999999864432211100000                         00


Q ss_pred             c-cCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC-------ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEE
Q 001310          933 M-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE-------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus       933 ~-~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~-------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~v 1004 (1103)
                      - .....+...+-|....+...+.+-.+++-|.-.       ...++..... ...|+.+.+-.+-..|+|+|.|..|+|
T Consensus       312 crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~i  390 (404)
T KOG1409|consen  312 CRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIKI  390 (404)
T ss_pred             hhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEEE
Confidence            0 000112222223233333334444455544321       1112221112 457899999999899999999999999


Q ss_pred             EeCCC
Q 001310         1005 HEASN 1009 (1103)
Q Consensus      1005 Wd~~~ 1009 (1103)
                      ||+.+
T Consensus       391 wd~~~  395 (404)
T KOG1409|consen  391 WDVRS  395 (404)
T ss_pred             Eechh
Confidence            99864

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.38  E-value=1.3e-09  Score=110.30  Aligned_cols=281  Identities=11%  Similarity=0.098  Sum_probs=186.6

Q ss_pred             ccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC---ceEEEeecCCCccccccccccccCCeee
Q 001310          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1103)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~  783 (1103)
                      +..|.+|++++........   .........+-++++|+++.|.++..+   |.+..|.++.                  
T Consensus        15 s~gI~v~~ld~~~g~l~~~---~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~------------------   73 (346)
T COG2706          15 SQGIYVFNLDTKTGELSLL---QLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDP------------------   73 (346)
T ss_pred             CCceEEEEEeCcccccchh---hhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcC------------------
Confidence            4568888877432221111   112245677889999999999888765   6666666543                  


Q ss_pred             cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCC-ceeeEE--ecCCCCC----------eeE
Q 001310          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTILT--IMPPSPT----------ATS  848 (1103)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~~~--~~~~~~~----------i~~  848 (1103)
                        .+|.-........  ...+...++++++|++|+++.  .|.|.++-+.. |.....  ...|.+.          +..
T Consensus        74 --~~G~Lt~ln~~~~--~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~  149 (346)
T COG2706          74 --DDGRLTFLNRQTL--PGSPPCYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHS  149 (346)
T ss_pred             --CCCeEEEeecccc--CCCCCeEEEECCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccce
Confidence              3333222221111  233447899999999999997  58899999865 433221  1123332          788


Q ss_pred             EEEcCCCCCEEEEEeCC-CeEEEEEcCCceeEEEec---cCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCC--Ccee
Q 001310          849 LAFNPHDNNVIAIGMDD-STILIYNARSSEVISKLE---GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG--WGIQ  921 (1103)
Q Consensus       849 l~~s~~d~~~lasg~~d-g~v~iwd~~~~~~~~~l~---~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~--~~~~  921 (1103)
                      ..+.| ++++|++.+-. -.|.+|++..|++...-.   .-...-+.|+|+|++++.....+ +++|.+|..+.  ++..
T Consensus       150 a~~tP-~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~  228 (346)
T COG2706         150 ANFTP-DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFE  228 (346)
T ss_pred             eeeCC-CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEE
Confidence            89999 89888887532 379999999876432211   23445688999999999877665 89999999988  5655


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe--CCeEEEEECCC--ceEEE-EeeCCCCcCeEEEEEccCCCEEEEE
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEAEE--LTCLK-QWFPISSVPISQATFSCDCRMVFTS  996 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--d~~v~iwd~~~--~~~~~-~~~~~h~~~v~~l~fs~dg~~l~t~  996 (1103)
                      ..+.+.++........+...+..++||++|.++.  ...|.+|.+..  +++.. .....+...-....|+++|++|+++
T Consensus       229 ~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa  308 (346)
T COG2706         229 ELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAA  308 (346)
T ss_pred             EeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEE
Confidence            5555555544444445788999999999999974  34688887753  33221 1233345557889999999999999


Q ss_pred             ecC-CcEEEEeCC--CceeE
Q 001310          997 FVD-GTLSIHEAS--NLEVQ 1013 (1103)
Q Consensus       997 ~~d-g~v~vWd~~--~~~~~ 1013 (1103)
                      .++ ..|.+|..+  +|++-
T Consensus       309 ~q~sd~i~vf~~d~~TG~L~  328 (346)
T COG2706         309 NQKSDNITVFERDKETGRLT  328 (346)
T ss_pred             ccCCCcEEEEEEcCCCceEE
Confidence            865 458888775  55554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.38  E-value=1.1e-09  Score=116.40  Aligned_cols=270  Identities=15%  Similarity=0.135  Sum_probs=170.0

Q ss_pred             CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC----------CCeEEEEEec
Q 001310          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----------KHIVQLYAYH  426 (1103)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~----------d~~i~iwd~~  426 (1103)
                      ++|.+.|..+++.+.+...                  |.  .-..+ +||||+.|+++..          +..|.+||..
T Consensus        27 ~~v~ViD~~~~~v~g~i~~------------------G~--~P~~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~   85 (352)
T TIGR02658        27 TQVYTIDGEAGRVLGMTDG------------------GF--LPNPV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ   85 (352)
T ss_pred             ceEEEEECCCCEEEEEEEc------------------cC--CCcee-ECCCCCEEEEEeccccccccCCCCCEEEEEECc
Confidence            8999999999887765221                  11  11224 9999999988755          6789999999


Q ss_pred             CCCccccceEecc-c---cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEE
Q 001310          427 GGSDARQQLEIDA-H---VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI  502 (1103)
Q Consensus       427 ~~~~~~~~~~l~~-h---~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l  502 (1103)
                      +.+.+..+..-.. +   ...-..++++|||+.+++.--+.+..|.+.|+.+++.+..+...... .  .+ +..+... 
T Consensus        86 t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~-~--vy-~t~e~~~-  160 (352)
T TIGR02658        86 THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY-H--IF-PTANDTF-  160 (352)
T ss_pred             cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc-E--EE-EecCCcc-
Confidence            9876653321000 1   12334789999999533333345889999999999999888642211 1  11 1112112 


Q ss_pred             EEEECCCeEEEEEcCCCCeeE-----EecCCCccE-EEEEEcc-CCCEEEEEecCCCCceeEEEEeCCCC-----eeEEE
Q 001310          503 FSISVDGKIKAWLYDSLGARV-----DYDAPGLGC-TRMAYSA-NGRRLFSCGTSKEGESFLVEWNESEG-----AIKRT  570 (1103)
Q Consensus       503 ~s~~~dg~i~iwd~~~~~~~~-----~~~~~~~~i-~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~-----~~~~~  570 (1103)
                      ..-+.||......++......     .+.....++ ..-.|++ +|++++...     ++.|++.|+...     .....
T Consensus       161 ~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~-----eG~V~~id~~~~~~~~~~~~~~  235 (352)
T TIGR02658       161 FMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTY-----TGKIFQIDLSSGDAKFLPAIEA  235 (352)
T ss_pred             EEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEec-----CCeEEEEecCCCcceecceeee
Confidence            233445554444333322211     111100000 0114456 888887765     366999995432     32332


Q ss_pred             Eeccc----ccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC-
Q 001310          571 YQGLQ----LQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-  635 (1103)
Q Consensus       571 ~~~~~----~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-  635 (1103)
                      +....    ...+....+++++++++++...          ..+.|.++|..+++.+..+....   .+..++++||++ 
T Consensus       236 ~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~---~~~~iavS~Dgkp  312 (352)
T TIGR02658       236 FTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGH---EIDSINVSQDAKP  312 (352)
T ss_pred             ccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCC---ceeeEEECCCCCe
Confidence            22111    1123445599999999988843          22579999999999999987642   478999999999 


Q ss_pred             EEEEEE-CCCeEEEEEcCCCCeeEec
Q 001310          636 LLAVIA-NENRIKILETPESNSVDAA  660 (1103)
Q Consensus       636 ~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1103)
                      +|++.. .++.|.++|..+++.+..+
T Consensus       313 ~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       313 LLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             EEEEeCCCCCcEEEEECcCCeEEeee
Confidence            777666 5788999999999888776

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG3881 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.36  E-value=8.1e-11  Score=118.98  Aligned_cols=208  Identities=11%  Similarity=0.107  Sum_probs=157.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCce----eeEEecCCCCCeeEEEEcCCCCCEEEEEeCC--CeEEEEEcC
Q 001310          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK----TILTIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNAR  874 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~  874 (1103)
                      ...+|..++. .||.++.+.++|.+.+|..+.+.    .+..+. ....+..+.-++.+..++|+|+..  ..+.|||+.
T Consensus       104 ~~~~I~gl~~-~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la-~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle  181 (412)
T KOG3881|consen  104 GTKSIKGLKL-ADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLA-TGPGLYDVRQTDTDPYIVATGGKENINELKIWDLE  181 (412)
T ss_pred             ccccccchhh-cCCEEEEEecCCcEEEEeccCCccccccceeee-cCCceeeeccCCCCCceEecCchhcccceeeeecc
Confidence            3445555554 36677776678999999988443    222232 224555666666556688889988  899999999


Q ss_pred             CceeEEEeccCC---------CCEEEEEEccC--CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310          875 SSEVISKLEGHS---------KRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       875 ~~~~~~~l~~h~---------~~V~~l~~s~d--g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1103)
                      ..+.+..-+.-.         -.++++.|-+.  ...||+++.-+.+++||...+.    +++..+.-..   .+++++.
T Consensus       182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qR----RPV~~fd~~E---~~is~~~  254 (412)
T KOG3881|consen  182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQR----RPVAQFDFLE---NPISSTG  254 (412)
T ss_pred             cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccC----cceeEecccc---Ccceeee
Confidence            886554433211         24567889887  7899999999999999999744    2333222222   3799999


Q ss_pred             EcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          944 FHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       944 fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      .-|+|+++.++ .-+.+..+|++.+..+...+.+-.+.|+++...|..++|+++|-|..|||+|+++.+++...+
T Consensus       255 l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvY  329 (412)
T KOG3881|consen  255 LTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVY  329 (412)
T ss_pred             ecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhh
Confidence            99999999998 678999999999999888788889999999999999999999999999999999977764444

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.35  E-value=2.3e-10  Score=129.03  Aligned_cols=237  Identities=11%  Similarity=0.036  Sum_probs=146.5

Q ss_pred             cceeEecccCCcCceEEEecCCCce--EEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHT--LLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~--llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      ....+.|..+...+..-+|||||+.  ++.+...+  ..|.+.++.+|+....                    ....+..
T Consensus       174 G~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l--------------------t~~~g~~  233 (428)
T PRK01029        174 GQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI--------------------LALQGNQ  233 (428)
T ss_pred             CCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe--------------------ecCCCCc
Confidence            3444556656667788899999975  33344444  3588888888765432                    2233445


Q ss_pred             EEEEECCCCCEEEEEeC-CC----eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE--eC
Q 001310          400 NRVVWSPDGSLLGVAYS-KH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW--DA  472 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~-d~----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw--d~  472 (1103)
                      ...+|||||+.||..+. +|    .+.+|++.++..-.......++.......+|+|||+. ++++...+|...+|  ++
T Consensus       234 ~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g~~~ly~~~~  312 (428)
T PRK01029        234 LMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTR-LVFVSNKDGRPRIYIMQI  312 (428)
T ss_pred             cceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEEC
Confidence            56899999999997653 22    3445777653211111122223334567899999995 23333456655555  44


Q ss_pred             CC-CceeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          473 VT-GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       473 ~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      .. +.....+..+...+....|  ++||+.|+..+.+   ..|.+||+.+++...... ....+....|+|||+.|+...
T Consensus       313 ~~~g~~~~~lt~~~~~~~~p~w--SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        313 DPEGQSPRLLTKKYRNSSCPAW--SPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             cccccceEEeccCCCCccceeE--CCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECCCCCEEEEEE
Confidence            32 3334555555555666677  4577777766543   368999998876654332 234567789999999988765


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1103)
                      .. .+...|+++|+.+++......+ .   +.+...+|+|-
T Consensus       390 ~~-~g~~~L~~vdl~~g~~~~Lt~~-~---g~~~~p~Ws~~  425 (428)
T PRK01029        390 GN-SNESELYLISLITKKTRKIVIG-S---GEKRFPSWGAF  425 (428)
T ss_pred             CC-CCCceEEEEECCCCCEEEeecC-C---CcccCceecCC
Confidence            43 3456799999988876554432 2   34566777764

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.34  E-value=1.9e-10  Score=131.94  Aligned_cols=230  Identities=13%  Similarity=0.092  Sum_probs=145.2

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  401 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  401 (1103)
                      ....+.+..+...+...+|||||++++.+...+  ..|.+||+.+|+...                    +....+.+..
T Consensus       188 g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~~~g~~~~  247 (430)
T PRK00178        188 GARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITNFEGLNGA  247 (430)
T ss_pred             CCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccCCCCCcCC
Confidence            334456666777899999999999655554433  368999999886543                    2223344557


Q ss_pred             EEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCc
Q 001310          402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS  476 (1103)
Q Consensus       402 ~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~  476 (1103)
                      .+|||||++|+.. +.+|  .|.+||+.+++..    .+..+........|+|||+. ++++...++  .|+++|+.+++
T Consensus       248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~~d~~~g~  322 (430)
T PRK00178        248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYKVNVNGGR  322 (430)
T ss_pred             eEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence            8999999998854 3444  6888899887532    34455556677899999995 233333333  57778888877


Q ss_pred             eeEEeecCCCceEEEEeeecCCccEEEEEECC-C--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      ... +...........|  ++++..++..+.+ +  .|.+||+.++........  .......|+|||+.++..+.. .+
T Consensus       323 ~~~-lt~~~~~~~~~~~--Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~~~~~-~g  396 (430)
T PRK00178        323 AER-VTFVGNYNARPRL--SADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIYATRQ-QG  396 (430)
T ss_pred             EEE-eecCCCCccceEE--CCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEEEEec-CC
Confidence            543 2212222233455  4566777766543 3  477888887665432222  222356899999999887653 33


Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      ...|++++... ...+.+....   +.+...+|+|
T Consensus       397 ~~~l~~~~~~g-~~~~~l~~~~---g~~~~p~ws~  427 (430)
T PRK00178        397 RGVLMLVSING-RVRLPLPTAQ---GEVREPSWSP  427 (430)
T ss_pred             ceEEEEEECCC-CceEECcCCC---CCcCCCccCC
Confidence            56788888754 3334444333   4556666765

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=6.4e-10  Score=125.41  Aligned_cols=228  Identities=12%  Similarity=0.086  Sum_probs=141.1

Q ss_pred             ccCCCccEEEEEECCCCCEEE---EEeCC--CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC---
Q 001310          392 VRDPGVSVNRVVWSPDGSLLG---VAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD---  463 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~la---s~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~---  463 (1103)
                      +......+.+-+|||||+.++   +...+  ..|.+.++.+|+..+    +....+.....+|||||+++ +++...   
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~L-af~s~~~g~  254 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKLL-AFISDRYGN  254 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCEE-EEEECCCCC
Confidence            334555677889999998633   33333  358888998875332    33344455678999999953 333322   


Q ss_pred             -CCceEEEeCCCC---ceeEEeecCCCceEEEEeeecCCccEEEEEE-CCCeEEEEEc--CC-CCeeEEecCCCccEEEE
Q 001310          464 -DKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLY--DS-LGARVDYDAPGLGCTRM  535 (1103)
Q Consensus       464 -d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~--~~-~~~~~~~~~~~~~i~~~  535 (1103)
                       |..+.+|++.++   +.......+.......+|  ++||..|+..+ .+|...+|.+  +. +.....+......+...
T Consensus       255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w--SPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p  332 (428)
T PRK01029        255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF--SPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP  332 (428)
T ss_pred             cceeEEEeecccCCCCcceEeecCCCCCcCCeEE--CCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence             323455777653   333333233233445566  55777777665 4666555544  32 22233344444566788


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCee
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQL  612 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~  612 (1103)
                      .|||||+.|+..+.. .+...|++||+.+++......+ .   ..+....|+|||+.|+..+.   ...|+++|+.+++.
T Consensus       333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~---~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~  407 (428)
T PRK01029        333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P---ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT  407 (428)
T ss_pred             eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C---CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            999999999887653 2356799999998876544332 2   34667889999998876442   35788999988776


Q ss_pred             EEEEcCCCCCCCCceEEEecCC
Q 001310          613 LTTIDAGGGLPENPRICFNKNG  634 (1103)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~g  634 (1103)
                      .......   ..+...+|+|-.
T Consensus       408 ~~Lt~~~---g~~~~p~Ws~~~  426 (428)
T PRK01029        408 RKIVIGS---GEKRFPSWGAFP  426 (428)
T ss_pred             EEeecCC---CcccCceecCCC
Confidence            5544332   235667888743

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.33  E-value=6.3e-09  Score=105.45  Aligned_cols=250  Identities=13%  Similarity=0.192  Sum_probs=171.5

Q ss_pred             CCCCeeEEEEecCCCEEEEEc----CCeEEEEEcCC--ceee--EEecCCCCCeeEEEEcCCCCCEEEEEeC-CCeEEEE
Q 001310          801 SQEAVPCFALSKNDAYLFSAS----GGVISLYIVMT--FKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMD-DSTILIY  871 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~----dg~i~iwd~~~--~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg~v~iw  871 (1103)
                      ....++-++++|+++.|.++.    +|.|.-|.+..  |+..  ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~  116 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY  116 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence            667788999999999888874    36788887764  4432  22222334448899999 8888888765 4799999


Q ss_pred             EcCC-ceeE--EEeccCCCC----------EEEEEEccCCCEEEEEe--CCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310          872 NARS-SEVI--SKLEGHSKR----------VTGLVFSDALNILVSSG--GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1103)
Q Consensus       872 d~~~-~~~~--~~l~~h~~~----------V~~l~~s~dg~~l~s~s--~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1103)
                      -+.. |.+.  ..+..|.+.          +....|.|++++|++.+  .|+ |.+|+++.|.+..........|     
T Consensus       117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dr-i~~y~~~dg~L~~~~~~~v~~G-----  190 (346)
T COG2706         117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDR-IFLYDLDDGKLTPADPAEVKPG-----  190 (346)
T ss_pred             EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCce-EEEEEcccCccccccccccCCC-----
Confidence            9865 4322  122235555          88899999999999875  454 9999999888666544444333     


Q ss_pred             CCceEEEEcCCCCEEEEE--eCCeEEEEECCCc-eEEEEee------CCC--CcCeEEEEEccCCCEEEEEec-CCcEEE
Q 001310          937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEEL-TCLKQWF------PIS--SVPISQATFSCDCRMVFTSFV-DGTLSI 1004 (1103)
Q Consensus       937 ~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~-~~~~~~~------~~h--~~~v~~l~fs~dg~~l~t~~~-dg~v~v 1004 (1103)
                      ...+.+.|+|++++..+.  -+++|.+|..+.. ..+..+.      ...  ......|..++||++|.++.. ...|.+
T Consensus       191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~  270 (346)
T COG2706         191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV  270 (346)
T ss_pred             CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence            367999999999998774  6799999999873 2222211      111  456678999999999998752 346888


Q ss_pred             EeCCC--ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCC-cEEEEccCCCCCC
Q 001310         1005 HEASN--LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEPNEPGDT 1077 (1103)
Q Consensus      1005 Wd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-~v~vw~~~~~~~~ 1077 (1103)
                      |.+..  +++. ...   +.+               .....+..+.++|. +++|+++..++ .|.++.+....+.
T Consensus       271 f~V~~~~g~L~-~~~---~~~---------------teg~~PR~F~i~~~-g~~Liaa~q~sd~i~vf~~d~~TG~  326 (346)
T COG2706         271 FSVDPDGGKLE-LVG---ITP---------------TEGQFPRDFNINPS-GRFLIAANQKSDNITVFERDKETGR  326 (346)
T ss_pred             EEEcCCCCEEE-EEE---Eec---------------cCCcCCccceeCCC-CCEEEEEccCCCcEEEEEEcCCCce
Confidence            87754  3322 111   111               11244567888888 66666666554 7999998766665

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.33  E-value=1.6e-10  Score=131.57  Aligned_cols=230  Identities=14%  Similarity=0.095  Sum_probs=142.5

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCC--cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  401 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  401 (1103)
                      ....+.+..+...+....|||||++++.+...++  .|.+||+.+++....                    ....+....
T Consensus       207 G~~~~~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~l--------------------t~~~g~~~~  266 (448)
T PRK04792        207 GYNEQMLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKV--------------------TSFPGINGA  266 (448)
T ss_pred             CCCceEeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEe--------------------cCCCCCcCC
Confidence            3334556666778999999999996555544333  588899988865321                    111223346


Q ss_pred             EEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCc
Q 001310          402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGS  476 (1103)
Q Consensus       402 ~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~  476 (1103)
                      .+|||||+.|+.. +.++  .|.+||+.+++..    .+..+.......+|+|||+. ++++...++  .|.++|+.+++
T Consensus       267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~  341 (448)
T PRK04792        267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK  341 (448)
T ss_pred             eeECCCCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC
Confidence            8999999988764 4555  4788888876532    34445556678899999995 333443344  46677887776


Q ss_pred             eeEEeecCCCceEEEEeeecCCccEEEEEEC-CCe--EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      ... +..........+|  ++||.+|+..+. ++.  |.++|+.++..... ... .......|+|||+.++..... .+
T Consensus       342 ~~~-Lt~~g~~~~~~~~--SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~~-~g  415 (448)
T PRK04792        342 VSR-LTFEGEQNLGGSI--TPDGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTTY-QG  415 (448)
T ss_pred             EEE-EecCCCCCcCeeE--CCCCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEec-CC
Confidence            543 2222222333456  456677766554 443  45567766654332 211 122345899999999887653 34


Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      ...+++++. +|...+.+..+.   +.+...+|+|
T Consensus       416 ~~~l~~~~~-~G~~~~~l~~~~---g~~~~p~Wsp  446 (448)
T PRK04792        416 KQVLAAVSI-DGRFKARLPAGQ---GEVKSPAWSP  446 (448)
T ss_pred             ceEEEEEEC-CCCceEECcCCC---CCcCCCccCC
Confidence            566888887 555556665544   4566667776

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=4.7e-10  Score=111.27  Aligned_cols=170  Identities=14%  Similarity=0.194  Sum_probs=105.2

Q ss_pred             CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ee--EEEeccC-----CCCEEEEEEccC-CCEEEEEeCCCeEEE
Q 001310          842 PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV--ISKLEGH-----SKRVTGLVFSDA-LNILVSSGGDAQIFV  912 (1103)
Q Consensus       842 ~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~--~~~l~~h-----~~~V~~l~~s~d-g~~l~s~s~dg~I~i  912 (1103)
                      |.-.|.++.++. |+..+.+++ |=.|-+|++.-- +.  +-.++.|     +.-|++..|+|. .++++..+.-|+|++
T Consensus       163 HtyhiNSIS~Ns-D~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  163 HTYHINSISVNS-DKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             ceeEeeeeeecC-ccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            555667777776 555555444 556667766521 11  1112222     235667777774 356666777777777


Q ss_pred             EEcCCCce--eeeeeeecCCCcccC------CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCC-------
Q 001310          913 WDVDGWGI--QTCRSLQTPDGVMTL------APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPIS-------  977 (1103)
Q Consensus       913 wd~~~~~~--~~~~~~~~~~~~~~~------~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h-------  977 (1103)
                      -|+....+  ...+....+......      -..|..+.||++|+++++-.--+|++||+...........-|       
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kL  320 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKL  320 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHH
Confidence            77763211  011112222111110      146889999999999999777899999995433332223333       


Q ss_pred             -----CcCe---EEEEEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310          978 -----SVPI---SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus       978 -----~~~v---~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
                           +..|   ..++||.++.+++||+....++++++..|...
T Consensus       321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk~  364 (433)
T KOG1354|consen  321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSKE  364 (433)
T ss_pred             HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcce
Confidence                 3333   55899999999999999999999998877543

>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=99.31  E-value=7e-10  Score=110.07  Aligned_cols=357  Identities=13%  Similarity=0.190  Sum_probs=211.4

Q ss_pred             cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-----eeEEeecCC------------CceEEEEeeecCCccEEE
Q 001310          441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-----RTYSFEGHG------------APVYSLCPHAKENIHFIF  503 (1103)
Q Consensus       441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-----~~~~~~~~~------------~~v~~~~~~~~~~~~~l~  503 (1103)
                      ..-|.++.|...|.  +|++|..+|.|.++.-....     ....++.|.            ..|..+.|....+...++
T Consensus        25 adiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FL  102 (433)
T KOG1354|consen   25 ADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFL  102 (433)
T ss_pred             hcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEE
Confidence            45689999999999  89999999999999743322     123344443            357778888888888889


Q ss_pred             EEECCCeEEEEEcCCCCeeEE-----ecCCCccEEEEEE---ccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310          504 SISVDGKIKAWLYDSLGARVD-----YDAPGLGCTRMAY---SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1103)
Q Consensus       504 s~~~dg~i~iwd~~~~~~~~~-----~~~~~~~i~~~~~---s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1103)
                      ..+.|.+|++|.+........     .......++++..   .+....+.                   ..+.+.+..  
T Consensus       103 lstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~ve-------------------a~prRv~aN--  161 (433)
T KOG1354|consen  103 LSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVE-------------------ASPRRVYAN--  161 (433)
T ss_pred             EecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceee-------------------eeeeeeccc--
Confidence            999999999998876544331     1111112222211   11111110                   112223322  


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe-eEEEEcCCC-----CCCCCceEEEecC-CCEEEEEECCCeEEE
Q 001310          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ-LLTTIDAGG-----GLPENPRICFNKN-GTLLAVIANENRIKI  648 (1103)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~-~~~~~~~~~-----~~~~v~~v~~s~~-g~~l~~~~~dg~i~i  648 (1103)
                      .|...|+++.++.|+..++++. |=.|.+|+++--. .........     -..-|++..|+|. .+.++..+..|+|++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSAD-dLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSAD-DLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeecc-ceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            2347899999999998888765 6779999987422 222221111     0123678889984 567888888999999


Q ss_pred             EEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1103)
Q Consensus       649 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1103)
                      -|+.....-.                                                 ..-+++...            
T Consensus       241 cDmR~~aLCd-------------------------------------------------~hsKlfEep------------  259 (433)
T KOG1354|consen  241 CDMRQSALCD-------------------------------------------------AHSKLFEEP------------  259 (433)
T ss_pred             eechhhhhhc-------------------------------------------------chhhhhccc------------
Confidence            9987431110                                                 000011000            


Q ss_pred             cCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEE
Q 001310          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCF  808 (1103)
Q Consensus       729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l  808 (1103)
                       .            .|..+.+                                              +  .+....|..+
T Consensus       260 -e------------dp~~rsf----------------------------------------------f--seiIsSISDv  278 (433)
T KOG1354|consen  260 -E------------DPSSRSF----------------------------------------------F--SEIISSISDV  278 (433)
T ss_pred             -c------------CCcchhh----------------------------------------------H--HHHhhhhhce
Confidence             0            0000000                                              0  0134567778


Q ss_pred             EEecCCCEEEEEcCCeEEEEEcC-CceeeEEecCCC------------CCe---eEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310          809 ALSKNDAYLFSASGGVISLYIVM-TFKTILTIMPPS------------PTA---TSLAFNPHDNNVIAIGMDDSTILIYN  872 (1103)
Q Consensus       809 ~~s~d~~~l~~~~dg~i~iwd~~-~~~~~~~~~~~~------------~~i---~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1103)
                      .|+++|+++++-+--+|++||+. ..+.+.+++-|.            ..|   ..++|+- ++.++++|+....+++++
T Consensus       279 KFs~sGryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~  357 (433)
T KOG1354|consen  279 KFSHSGRYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFN  357 (433)
T ss_pred             EEccCCcEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEec
Confidence            88888888888877888899884 444555544332            122   4578988 788999999999999999


Q ss_pred             cCCceeE-EEeccCCCC--EEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310          873 ARSSEVI-SKLEGHSKR--VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1103)
Q Consensus       873 ~~~~~~~-~~l~~h~~~--V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  949 (1103)
                      +..|... .++.+....  ...+   ..-+.+.+++......+|-..            ..    ....+...+|+|..+
T Consensus       358 ~~~gsk~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~------------ld----f~kkilh~aWhp~en  418 (433)
T KOG1354|consen  358 LARGSKEDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA------------LD----FRKKILHTAWHPKEN  418 (433)
T ss_pred             CCCCcceeecccccccCCccccc---ccceeeecCCCccccccccch------------hh----hhhHHHhhccCCccc
Confidence            8776532 333322221  1111   112334444444332222110            00    001467789999999


Q ss_pred             EEEEEeCCeEEEEE
Q 001310          950 RFLLVHETHLAIYE  963 (1103)
Q Consensus       950 ~l~~~~d~~v~iwd  963 (1103)
                      .+|++.-+.++||.
T Consensus       419 ~ia~aatnnlyif~  432 (433)
T KOG1354|consen  419 SIAVAATNNLYIFQ  432 (433)
T ss_pred             eeeeeecCceEEec
Confidence            99998777888763

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=8.7e-10  Score=125.51  Aligned_cols=223  Identities=15%  Similarity=0.097  Sum_probs=141.0

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--  466 (1103)
                      +..+...+.+.+|||||++|+..+.+   ..|.+||+.+++...    +....+.....+|+|||+. ++++.+.++.  
T Consensus       213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~  287 (448)
T PRK04792        213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE  287 (448)
T ss_pred             eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence            33466788999999999999987543   268899998875321    2222233457899999995 3344556664  


Q ss_pred             eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCe--EEEEEcCCCCeeEEecCCCccEEEEEEccCCCE
Q 001310          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1103)
Q Consensus       467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1103)
                      |+++|+.+++. ..+..+.......+|+  +|+..|+..+. ++.  |.++|+.+++.... ..........+|+|||++
T Consensus       288 Iy~~dl~tg~~-~~lt~~~~~~~~p~wS--pDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~L-t~~g~~~~~~~~SpDG~~  363 (448)
T PRK04792        288 IYVVDIATKAL-TRITRHRAIDTEPSWH--PDGKSLIFTSERGGKPQIYRVNLASGKVSRL-TFEGEQNLGGSITPDGRS  363 (448)
T ss_pred             EEEEECCCCCe-EECccCCCCccceEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEE-ecCCCCCcCeeECCCCCE
Confidence            78889887764 3444455555666775  46666665543 444  55566666554332 222223345789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-C--cEEEEECCCCeeEEEEcCCC
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-H--VIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g--~i~iwd~~~~~~~~~~~~~~  620 (1103)
                      ++..+.. .+...|.++|+.+++... +....    ......|+|+|+.++..+.+ +  .+++++. +|.....+..+.
T Consensus       364 l~~~~~~-~g~~~I~~~dl~~g~~~~-lt~~~----~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~  436 (448)
T PRK04792        364 MIMVNRT-NGKFNIARQDLETGAMQV-LTSTR----LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQ  436 (448)
T ss_pred             EEEEEec-CCceEEEEEECCCCCeEE-ccCCC----CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCC
Confidence            9887653 234568889998886533 22211    11234799999998876543 3  3777786 455555555432


Q ss_pred             CCCCCceEEEec
Q 001310          621 GLPENPRICFNK  632 (1103)
Q Consensus       621 ~~~~v~~v~~s~  632 (1103)
                        ..+...+|+|
T Consensus       437 --g~~~~p~Wsp  446 (448)
T PRK04792        437 --GEVKSPAWSP  446 (448)
T ss_pred             --CCcCCCccCC
Confidence              2356677776

>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]

Probab=99.30  E-value=5.6e-11  Score=117.86  Aligned_cols=358  Identities=14%  Similarity=0.137  Sum_probs=228.5

Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE--EecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      ..++.++||.+.|++....+..+  -+++.+.|.++++|--.+.....  .......+++++.+.++.+.|+++-.    
T Consensus        15 ~ll~~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~----   88 (404)
T KOG1409|consen   15 ELLSKIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQD----   88 (404)
T ss_pred             hhhhhhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEe----
Confidence            34567789999998887766554  59999999999999654443332  22334557899999999999998876    


Q ss_pred             ceeEEEEeC----CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          554 ESFLVEWNE----SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       554 ~~~i~iwd~----~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                      .+.+.-+.+    +.....+.+..|.   ..+..+-|+....++++.+.|..+.---.+.+..+........   ..++.
T Consensus        89 ngtvtefs~sedfnkm~~~r~~~~h~---~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~---~t~~~  162 (404)
T KOG1409|consen   89 NGTVTEFALSEDFNKMTFLKDYLAHQ---ARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETP---ASALQ  162 (404)
T ss_pred             cceEEEEEhhhhhhhcchhhhhhhhh---cceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeecc---CCCCc
Confidence            334555543    3445556666666   8899999998889999999988876545555555443322211   11222


Q ss_pred             EecCCCEEEEEECCCeEEEEEcC--CCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          630 FNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      +.-.  +..+|...|.+.+..+.  .-..+..+.+|...+.++.+.                      +....+.++..|
T Consensus       163 ~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd----------------------~~~~~LfSg~~d  218 (404)
T KOG1409|consen  163 FDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD----------------------PGQRLLFSGASD  218 (404)
T ss_pred             eeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEc----------------------CCCcEEEecccc
Confidence            2211  56667677777776554  346788899999999999997                      567778999999


Q ss_pred             cccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccccc-----ccCCee
Q 001310          708 NKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT-----KVPPRL  782 (1103)
Q Consensus       708 ~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~-----~~~~~~  782 (1103)
                      ..+.+||+.........     ..+|...|..+...+--+.+++++.||.|.+|+++............     ...+..
T Consensus       219 ~~vi~wdigg~~g~~~e-----l~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpff  293 (404)
T KOG1409|consen  219 HSVIMWDIGGRKGTAYE-----LQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFF  293 (404)
T ss_pred             CceEEEeccCCcceeee-----eccchhhhhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHH
Confidence            99999998754433332     24588889988888888999999999999999998754422222111     122333


Q ss_pred             ecCCCCCceeeccCCCC--C-CCCCeeEEEEecCCCEEEEEcCCeEEEEEcC-------CceeeEEecCCCCCeeEEEEc
Q 001310          783 YQPRHGPQFMVNDTTDS--N-SQEAVPCFALSKNDAYLFSASGGVISLYIVM-------TFKTILTIMPPSPTATSLAFN  852 (1103)
Q Consensus       783 ~~~~~~~~~~~~~~~~~--~-~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~-------~~~~~~~~~~~~~~i~~l~~s  852 (1103)
                      |+....-......+...  . -.+.+...+-+....+...+..-.+++.|.-       +...+..+......|+++.+.
T Consensus       294 wn~~~m~~~k~~glr~h~crkcg~avc~~c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlq  373 (404)
T KOG1409|consen  294 WNFRQMWDRKQLGLRQHHCRKCGKAVCGKCSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQ  373 (404)
T ss_pred             HHHHHHHhhhhhhhhhhhhhhhhhhcCcccccCccccccccceeEEEEecccchhhhcCCCCccccccccccceeEEEhh
Confidence            33221110000001000  0 0112222222222222333333345555432       112233443444689999998


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCC
Q 001310          853 PHDNNVIAIGMDDSTILIYNARS  875 (1103)
Q Consensus       853 ~~d~~~lasg~~dg~v~iwd~~~  875 (1103)
                      . ...+|++++.|..|+|||+..
T Consensus       374 e-tlglLvTsG~~Rvi~iwd~~~  395 (404)
T KOG1409|consen  374 E-TLGLLVTSGTDRVIKIWDVRS  395 (404)
T ss_pred             h-hccceeecCCceEEEEEechh
Confidence            8 777999999999999999874

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=1.1e-09  Score=125.58  Aligned_cols=223  Identities=14%  Similarity=0.104  Sum_probs=142.1

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--c
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T  466 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~  466 (1103)
                      +..+...+...+|||||++||..+.+   ..|.+||+.+++...    +....+.+...+|+|||+. ++++.+.++  .
T Consensus       194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~  268 (430)
T PRK00178        194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE  268 (430)
T ss_pred             EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence            33467789999999999999887643   369999998875322    2233344567899999995 333555555  5


Q ss_pred             eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCE
Q 001310          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1103)
Q Consensus       467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1103)
                      |++||+.+++.. .+..+........|+  +|+..++..+. +|  .|.++++.+++..... ..........|+|||+.
T Consensus       269 Iy~~d~~~~~~~-~lt~~~~~~~~~~~s--pDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt-~~~~~~~~~~~Spdg~~  344 (430)
T PRK00178        269 IYVMDLASRQLS-RVTNHPAIDTEPFWG--KDGRTLYFTSDRGGKPQIYKVNVNGGRAERVT-FVGNYNARPRLSADGKT  344 (430)
T ss_pred             EEEEECCCCCeE-EcccCCCCcCCeEEC--CCCCEEEEEECCCCCceEEEEECCCCCEEEee-cCCCCccceEECCCCCE
Confidence            888898887654 455555555556664  46666665553 33  4667777666543322 22233345789999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCC
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~  620 (1103)
                      ++...... +...|++||+.+++....... .    ......|+|+|+.++..+.+   ..+++++... .....+..+.
T Consensus       345 i~~~~~~~-~~~~l~~~dl~tg~~~~lt~~-~----~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g-~~~~~l~~~~  417 (430)
T PRK00178        345 LVMVHRQD-GNFHVAAQDLQRGSVRILTDT-S----LDESPSVAPNGTMLIYATRQQGRGVLMLVSING-RVRLPLPTAQ  417 (430)
T ss_pred             EEEEEccC-CceEEEEEECCCCCEEEccCC-C----CCCCceECCCCCEEEEEEecCCceEEEEEECCC-CceEECcCCC
Confidence            98876532 345699999998865333222 1    12245799999999886643   3477777754 3333444322


Q ss_pred             CCCCCceEEEec
Q 001310          621 GLPENPRICFNK  632 (1103)
Q Consensus       621 ~~~~v~~v~~s~  632 (1103)
                        ..+...+|+|
T Consensus       418 --g~~~~p~ws~  427 (430)
T PRK00178        418 --GEVREPSWSP  427 (430)
T ss_pred             --CCcCCCccCC
Confidence              2355667776

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.29  E-value=3.6e-10  Score=111.96  Aligned_cols=163  Identities=18%  Similarity=0.328  Sum_probs=114.2

Q ss_pred             EEEEECCCCCEEEEEeC----------CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310          400 NRVVWSPDGSLLGVAYS----------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~----------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i  469 (1103)
                      ..+.|+|+|++|+.-..          -+...+|.++..........+ ...++|.+++|+|+|+.+.++.|..++.|.+
T Consensus         9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~l   87 (194)
T PF08662_consen    9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL   87 (194)
T ss_pred             EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence            45889999999886543          134666766443322221122 2345799999999999766666777889999


Q ss_pred             EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1103)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1103)
                      ||++ ++.+..+.  ...+..+.|+|  +|+++++++.+   |.|.+||.++.+......  ...+..++|+|||+++++
T Consensus        88 yd~~-~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t  160 (194)
T PF08662_consen   88 YDVK-GKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT  160 (194)
T ss_pred             EcCc-ccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence            9986 66666664  56778888854  77899988744   679999999666655543  335789999999999998


Q ss_pred             EecC--CCCceeEEEEeCCCCeeEEEE
Q 001310          547 CGTS--KEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       547 ~~~~--~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      +...  ...++.+.||+.. |+.+...
T Consensus       161 a~t~~r~~~dng~~Iw~~~-G~~l~~~  186 (194)
T PF08662_consen  161 ATTSPRLRVDNGFKIWSFQ-GRLLYKK  186 (194)
T ss_pred             EEeccceeccccEEEEEec-CeEeEec
Confidence            8753  1235668899974 5555443

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.28  E-value=8.4e-10  Score=126.79  Aligned_cols=210  Identities=15%  Similarity=0.090  Sum_probs=138.5

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--c
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--T  466 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~  466 (1103)
                      +..+...+...+|||||++||.+..+   ..|++||+.+++..    .+..+...+.+++|+|||+. ++++.+.++  .
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~----~~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~  259 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQRE----KVASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD  259 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEE----EeecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence            33466778999999999999988644   47999999987532    23345566778999999985 334455444  5


Q ss_pred             eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCE
Q 001310          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1103)
Q Consensus       467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1103)
                      |++||+.++... .+..+........|+  +++..|+..+. ++  .|.++++.+++.. .+.........+.|+|+|++
T Consensus       260 i~~~d~~~~~~~-~l~~~~~~~~~~~~s--~dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~  335 (417)
T TIGR02800       260 IYVMDLDGKQLT-RLTNGPGIDTEPSWS--PDGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDL  335 (417)
T ss_pred             EEEEECCCCCEE-ECCCCCCCCCCEEEC--CCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCE
Confidence            888998877643 344444444455664  47777776654 33  5777777765533 33334456677899999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC---cEEEEECCCCeeEEEEc
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---VIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~  617 (1103)
                      ++.+.... +...|++||+.++... .+....    ......|+|++++|+..+.++   .+++.+.. +.....+.
T Consensus       336 i~~~~~~~-~~~~i~~~d~~~~~~~-~l~~~~----~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       336 IAFVHREG-GGFNIAVMDLDGGGER-VLTDTG----LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             EEEEEccC-CceEEEEEeCCCCCeE-EccCCC----CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence            99887543 3457999999886543 232211    234457999999998877554   35555543 44444444

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.28  E-value=3.9e-10  Score=129.49  Aligned_cols=216  Identities=19%  Similarity=0.153  Sum_probs=140.7

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNR  401 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~  401 (1103)
                      ....+.+..+...+...+|||||++++.+...+  ..|.+||+.+++...                    +..+.+.+.+
T Consensus       179 g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~~~~~~~~  238 (417)
T TIGR02800       179 GANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VASFPGMNGA  238 (417)
T ss_pred             CCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eecCCCCccc
Confidence            344466667777899999999999654443332  479999999886543                    2234556777


Q ss_pred             EEECCCCCEEEEE-eCCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCC--ceEEEeCCCC
Q 001310          402 VVWSPDGSLLGVA-YSKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK--TIKVWDAVTG  475 (1103)
Q Consensus       402 ~~~spdg~~las~-~~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~--~i~iwd~~~~  475 (1103)
                      ++|+|||+.|+.. +.++  .|.+||+.++...    .+..+........|+|||+.  |+..+ .++  .|.++|+.++
T Consensus       239 ~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~--l~~~s~~~g~~~iy~~d~~~~  312 (417)
T TIGR02800       239 PAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS--IAFTSDRGGSPQIYMMDADGG  312 (417)
T ss_pred             eEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE--EEEEECCCCCceEEEEECCCC
Confidence            9999999988754 3333  5888998876432    23445455567799999994  44333 333  5888888776


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECCC---eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      +. ..+..+...+....|+  +++.+++.++.++   .|.+||+.++...... .. .......|+|||+.|+.....+ 
T Consensus       313 ~~-~~l~~~~~~~~~~~~s--pdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~-~~-~~~~~p~~spdg~~l~~~~~~~-  386 (417)
T TIGR02800       313 EV-RRLTFRGGYNASPSWS--PDGDLIAFVHREGGGFNIAVMDLDGGGERVLT-DT-GLDESPSFAPNGRMILYATTRG-  386 (417)
T ss_pred             CE-EEeecCCCCccCeEEC--CCCCEEEEEEccCCceEEEEEeCCCCCeEEcc-CC-CCCCCceECCCCCEEEEEEeCC-
Confidence            64 3444455556666664  4677888887775   7888888775443322 11 2234568999999998877643 


Q ss_pred             CceeEEEEeCCCCeeEEEEe
Q 001310          553 GESFLVEWNESEGAIKRTYQ  572 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~  572 (1103)
                      +...+++.+.. +.....+.
T Consensus       387 ~~~~l~~~~~~-g~~~~~~~  405 (417)
T TIGR02800       387 GRGVLGLVSTD-GRFRARLP  405 (417)
T ss_pred             CcEEEEEEECC-CceeeECC
Confidence            34556776643 44444443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.22  E-value=1.9e-09  Score=115.57  Aligned_cols=188  Identities=14%  Similarity=0.229  Sum_probs=148.1

Q ss_pred             cCCCEEEEEc-CCeEEEEEcCCceeeEEecCC---CCCeeEEEE------cC-------------CCCCEEEEEeCCCeE
Q 001310          812 KNDAYLFSAS-GGVISLYIVMTFKTILTIMPP---SPTATSLAF------NP-------------HDNNVIAIGMDDSTI  868 (1103)
Q Consensus       812 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~---~~~i~~l~~------s~-------------~d~~~lasg~~dg~v  868 (1103)
                      |-..++|... ||.+++|+...++....+.+.   .+..++..|      +|             .|...++-|...|.|
T Consensus         3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v   82 (541)
T KOG4547|consen    3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV   82 (541)
T ss_pred             chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence            4456777775 899999999999888877532   123333333      12             155688889999999


Q ss_pred             EEEEcCCceeEEEec--cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC
Q 001310          869 LIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1103)
Q Consensus       869 ~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~  946 (1103)
                      .+|++..|+....+.  .|.+.|.++.++.+-..|-|++.|+.+..|+...+.     .+........   .+.+++.+|
T Consensus        83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~-----~~~~~~~~~~---~~~sl~is~  154 (541)
T KOG4547|consen   83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKV-----IIRIWKEQKP---LVSSLCISP  154 (541)
T ss_pred             EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccce-----eeeeeccCCC---ccceEEEcC
Confidence            999999999888886  499999999999999999999999999999999855     3333333332   588999999


Q ss_pred             CCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccC-----CCEEE-EEecCCcEEEEeCCC
Q 001310          947 DQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCD-----CRMVF-TSFVDGTLSIHEASN 1009 (1103)
Q Consensus       947 dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~d-----g~~l~-t~~~dg~v~vWd~~~ 1009 (1103)
                      ||+.|+++ .++|.+||+++++.+.. +.||.++|..+.|..+     |.+++ +...+.-+.+|-+..
T Consensus       155 D~~~l~~a-s~~ik~~~~~~kevv~~-ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  155 DGKILLTA-SRQIKVLDIETKEVVIT-FTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             CCCEEEec-cceEEEEEccCceEEEE-ecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            99988875 36899999999999988 8899999999999987     66655 444566788887765

>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]

Probab=99.20  E-value=1.1e-09  Score=117.43  Aligned_cols=194  Identities=13%  Similarity=0.185  Sum_probs=154.3

Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEe------c------------CCCceEEEEEcCCCc
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS------A------------PCKQISVITCGDDKT  466 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s------~------------d~~~~~l~s~~~d~~  466 (1103)
                      .|-+.|+|....||.++||+...++....+.....-.+.-++..|.      |            .+....++-|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            3567899999999999999999887544332222233344444442      1            122237888999999


Q ss_pred             eEEEeCCCCceeEEee--cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEE
Q 001310          467 IKVWDAVTGSRTYSFE--GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       467 i~iwd~~~~~~~~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1103)
                      |.+++...|+....+.  .|.+.|.++.++  .+-..|.+++.|+.+..|+.........+......+.+++++|||..+
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~--~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l  159 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDA--QRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL  159 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecc--cccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence            9999999999988885  689999998874  344689999999999999999988888999888899999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC-----CCEEEE-EeCCCcEEEEECCC
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-----KDQILA-AGDDHVIKIWDMNK  609 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~-~~~dg~i~iwd~~~  609 (1103)
                      ++++.      .|.+||+++++.+..|.||.   ++|++++|..+     |.++++ ...+..+.+|-...
T Consensus       160 ~~as~------~ik~~~~~~kevv~~ftgh~---s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  160 LTASR------QIKVLDIETKEVVITFTGHG---SPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             Eeccc------eEEEEEccCceEEEEecCCC---cceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            98854      59999999999999999999   99999999877     677776 34556677776554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.20  E-value=4.2e-08  Score=110.58  Aligned_cols=207  Identities=10%  Similarity=0.081  Sum_probs=124.8

Q ss_pred             cCCeEEEEEcCCceeeEEecCCCCCe-----eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC----C---
Q 001310          821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK----R---  888 (1103)
Q Consensus       821 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~----~---  888 (1103)
                      .++.+..||..+|+.+.+........     .+..+.  ++ .++.+..+|.+..+|..+|+.+........    .   
T Consensus       153 ~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~-~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~  229 (377)
T TIGR03300       153 NDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DG-GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELER  229 (377)
T ss_pred             CCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CC-EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhh
Confidence            35667777777776665554322111     111222  33 677788899999999999987655431100    0   


Q ss_pred             ---E-EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEE
Q 001310          889 ---V-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYE  963 (1103)
Q Consensus       889 ---V-~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd  963 (1103)
                         + ....+  .+..+..++.+|.+..||..+|+..-...  . .       ......  .++..+.+ ..++.++.+|
T Consensus       230 ~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~--~-~-------~~~~p~--~~~~~vyv~~~~G~l~~~d  295 (377)
T TIGR03300       230 LVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRD--A-S-------SYQGPA--VDDNRLYVTDADGVVVALD  295 (377)
T ss_pred             hhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeec--c-C-------CccCce--EeCCEEEEECCCCeEEEEE
Confidence               0 01111  34577778889999999999987544221  1 1       111222  23455555 5789999999


Q ss_pred             CCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCcee
Q 001310          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVY 1043 (1103)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1043 (1103)
                      ..+|+.+............+...  .+..|++++.+|.|+++|..+|+.+.++....                   ..+.
T Consensus       296 ~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~-------------------~~~~  354 (377)
T TIGR03300       296 RRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTDG-------------------SGIA  354 (377)
T ss_pred             CCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-------------------Cccc
Confidence            99998876532111122222222  46688889999999999999999988776211                   1111


Q ss_pred             eEEEEECCCCCcEEEEEecCCcEEEE
Q 001310         1044 PHAIAAHPLKPTQFAVGLTNGEVYVI 1069 (1103)
Q Consensus      1044 ~~~~~~~p~~~~~l~~~~~dg~v~vw 1069 (1103)
                      ..- ...   ++.|+.++.||.|+.|
T Consensus       355 ~sp-~~~---~~~l~v~~~dG~l~~~  376 (377)
T TIGR03300       355 SPP-VVV---GDGLLVQTRDGDLYAF  376 (377)
T ss_pred             cCC-EEE---CCEEEEEeCCceEEEe
Confidence            100 111   4568889999999876

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=99.18  E-value=3.8e-08  Score=110.96  Aligned_cols=181  Identities=13%  Similarity=0.067  Sum_probs=112.7

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  536 (1103)
                      .++.++.++.|..+|..+|+.+...............    ++..++.++.+|.+..+|..+++................
T Consensus        67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~  142 (377)
T TIGR03300        67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL  142 (377)
T ss_pred             EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence            5788888999999999999998776544332222222    446788889999999999999888776654432221122


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCce-----EEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV-----SVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  611 (1103)
                      +  .+..++.+..    ++.++.||..+|+.+-.+....   ..+     ......  +..++.+..+|.+..+|..+|+
T Consensus       143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~---~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~  211 (377)
T TIGR03300       143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVT---PALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQ  211 (377)
T ss_pred             E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCC---CceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCC
Confidence            2  2345555543    5679999999999877665432   111     111111  2467788889999999999998


Q ss_pred             eEEEEcCCCCC--CC------C-ceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          612 LLTTIDAGGGL--PE------N-PRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       612 ~~~~~~~~~~~--~~------v-~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      .+.........  ..      + ....+  .+..+++++.+|.+..||..++
T Consensus       212 ~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG  261 (377)
T TIGR03300       212 PLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSG  261 (377)
T ss_pred             EeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCC
Confidence            77654321110  00      0 01111  2445666666777777776655

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]

Probab=99.18  E-value=1.4e-10  Score=110.94  Aligned_cols=169  Identities=21%  Similarity=0.261  Sum_probs=122.5

Q ss_pred             chhHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh---------HHHHHHHhcCcCHHHHHHHhccCCC--cCCcccccc
Q 001310            3 KLNKDLVFLILQFLNEEGFTESAHMLERESRFYFD---------MKFFEDMILDGKWEDVEQYLSSFTK--VDDNRYSTK   71 (1103)
Q Consensus         3 ~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~--~~~~~~~~~   71 (1103)
                      ..++|+-|||+.||-..||.++|+.+..|+||..+         -...|.+|..|+-++|+..+.++-+  ++.+  + .
T Consensus        24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n--~-~  100 (228)
T KOG2659|consen   24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTN--R-E  100 (228)
T ss_pred             cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccc--h-h
Confidence            45789999999999999999999999999999772         3677999999999999999988632  2322  2 2


Q ss_pred             hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhc-cccccCCChHHHHHHHHHHHH
Q 001310           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHEL-LSKYYGDALSARKNMMLELKQ  150 (1103)
Q Consensus        72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~-~~~~~~~~~~~r~~l~~~l~~  150 (1103)
                      +.|.+.+|+++|++..+...+|++|+|++|.|+...++..++.|...|..--++.... ...| --....|.++..+++.
T Consensus       101 l~F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp~~~-l~~~s~R~kvA~~vN~  179 (228)
T KOG2659|consen  101 LFFHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESPSAE-LLSQSLRQKVASEVNS  179 (228)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCcHHH-HHHHHHHHHHHHHHHH
Confidence            7899999999999999999999999999999999878777777777665533321111 0000 0013346666666666


Q ss_pred             hhhcCccccccccCCCcchHHHHHHHHHHHHHH
Q 001310          151 IIEANPILQGKLKFPSIKRQRLRRLINQSLNWQ  183 (1103)
Q Consensus       151 ~~~~~~~~~~~~~~~~~p~~rL~~Ll~qa~~~q  183 (1103)
                      .|-...-   ..     -..+|..||+.-+..|
T Consensus       180 aiL~~~~---~~-----~~~~l~~llk~~~~~~  204 (228)
T KOG2659|consen  180 AILASQE---HE-----SEPKLPFLLKLISWAQ  204 (228)
T ss_pred             HHHHHhc---cc-----ccchHHHHHHHHHHHH
Confidence            5543111   11     1447888885555555

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=99.11  E-value=5.1e-09  Score=102.10  Aligned_cols=251  Identities=15%  Similarity=0.122  Sum_probs=162.8

Q ss_pred             CceEEEec---CCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc---cEEEEEECCCCC
Q 001310          336 SPMSMDFH---PVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGS  409 (1103)
Q Consensus       336 ~V~~v~~s---pdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~  409 (1103)
                      .+..+.|.   .+|...++-+..+|.|.++.....+....  ++         +     +..-.-   .--++.|++.|.
T Consensus        71 ~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~-----ls~~ki~~~~~lslD~~~~~~  134 (339)
T KOG0280|consen   71 TEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------G-----LSSKKISVVEALSLDISTSGT  134 (339)
T ss_pred             ccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------c-----cchhhhhheeeeEEEeeccCc
Confidence            66677775   24554566777788888887654332211  00         0     111111   244788999999


Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-CCceeEE-eecCCCc
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYS-FEGHGAP  487 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~-~~~~~~~  487 (1103)
                      .++++..+|.+.+-+..... +.....+++|....+-++|+..... ++.+||.|+.+..||++ .++.+.. .+.|...
T Consensus       135 ~i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~G  212 (339)
T KOG0280|consen  135 KIFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSG  212 (339)
T ss_pred             eEEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecc
Confidence            99999999998855544432 3333367899999999999877665 89999999999999998 4455544 5678999


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC--CEEEEEecCCCCceeEEEEeCCCC
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--RRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg--~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      |.+|.-++. .+.+|++|+.|-.|++||.++......-....+.|..+..+|.-  +.|+++-.++     ..+.+.+.+
T Consensus       213 V~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-----~ki~~~~~~  286 (339)
T KOG0280|consen  213 VVSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-----AKILDSSDK  286 (339)
T ss_pred             eEEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-----ceEEEeccc
Confidence            999987654 66899999999999999999766655555556789999999853  3444444322     444444432


Q ss_pred             --eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEE-EEECCCC
Q 001310          566 --AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIK-IWDMNKV  610 (1103)
Q Consensus       566 --~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~-iwd~~~~  610 (1103)
                        +....+..+..|..-...-.|......+++++ .|+.++ +|-.-++
T Consensus       287 ~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  287 VLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             ccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence              21122222222224555555543344566654 555544 6654443

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.04  E-value=2e-07  Score=116.12  Aligned_cols=260  Identities=12%  Similarity=0.082  Sum_probs=162.1

Q ss_pred             EEEEEecC-CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCE
Q 001310          738 SRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY  816 (1103)
Q Consensus       738 ~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~  816 (1103)
                      ..++++++ +..+++-..++.|.+++.........+....      .....|.      +. .+.-.....+++++++..
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g~------~G~~dG~------~~-~a~f~~P~GIavd~~gn~  637 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTGE------EGLRDGS------FE-DATFNRPQGLAYNAKKNL  637 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCCC------cCCCCCc------hh-ccccCCCcEEEEeCCCCE
Confidence            45778875 5555555667888888865321100000000      0000010      00 012344678999999887


Q ss_pred             EEEEc--CCeEEEEEcCCceeeEEecCC-----------------CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310          817 LFSAS--GGVISLYIVMTFKTILTIMPP-----------------SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1103)
Q Consensus       817 l~~~~--dg~i~iwd~~~~~~~~~~~~~-----------------~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1103)
                      |.++.  .+.|+++|..++. +.++.+.                 -..-..++++|+++.++++.+.++.|++||..++.
T Consensus       638 LYVaDt~n~~Ir~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~  716 (1057)
T PLN02919        638 LYVADTENHALREIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGV  716 (1057)
T ss_pred             EEEEeCCCceEEEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCe
Confidence            66665  4779999987654 3333210                 11336799999666777777888999999998765


Q ss_pred             eEEEecc---------C------CCCEEEEEEccCCCE-EEEEeCCCeEEEEEcCCCceeeeee--------eecC---C
Q 001310          878 VISKLEG---------H------SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRS--------LQTP---D  930 (1103)
Q Consensus       878 ~~~~l~~---------h------~~~V~~l~~s~dg~~-l~s~s~dg~I~iwd~~~~~~~~~~~--------~~~~---~  930 (1103)
                      .. .+.+         +      -.....++++|||+. +++-+.++.|++||+.++......-        +...   .
T Consensus       717 v~-~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~d  795 (1057)
T PLN02919        717 TR-VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHD  795 (1057)
T ss_pred             EE-EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCC
Confidence            32 2211         1      123467999999984 4555667899999998765321100        0000   0


Q ss_pred             Cc--ccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCC------------CCcCeEEEEEccCCCEEEE
Q 001310          931 GV--MTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFT  995 (1103)
Q Consensus       931 ~~--~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t  995 (1103)
                      +.  .........++|+++|+++++ ..+++|++||..++......-.+            +-.....+++++||+.+++
T Consensus       796 G~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa  875 (1057)
T PLN02919        796 GVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA  875 (1057)
T ss_pred             CchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence            00  000113568999999987776 47889999999887665332111            1235678999999998888


Q ss_pred             EecCCcEEEEeCCCcee
Q 001310          996 SFVDGTLSIHEASNLEV 1012 (1103)
Q Consensus       996 ~~~dg~v~vWd~~~~~~ 1012 (1103)
                      -+.+++|++||+.+++.
T Consensus       876 Dt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        876 DTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             ECCCCEEEEEECCCCcc
Confidence            88999999999999875

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.01  E-value=2.6e-07  Score=115.20  Aligned_cols=256  Identities=11%  Similarity=0.073  Sum_probs=159.9

Q ss_pred             eEEEEecCCC-EEEEEc-CCeEEEEEcCCceeeEEecC--C------------CCCeeEEEEcCCCCCEEEEEe-CCCeE
Q 001310          806 PCFALSKNDA-YLFSAS-GGVISLYIVMTFKTILTIMP--P------------SPTATSLAFNPHDNNVIAIGM-DDSTI  868 (1103)
Q Consensus       806 ~~l~~s~d~~-~l~~~~-dg~i~iwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~d~~~lasg~-~dg~v  868 (1103)
                      ..+++++++. ++++-. ++.|+++|.. +..+..+..  .            -.....+++++ ++..|+++. .++.|
T Consensus       571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I  648 (1057)
T PLN02919        571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL  648 (1057)
T ss_pred             ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence            4678887644 444444 5889999986 444444332  1            12357899998 666555554 45789


Q ss_pred             EEEEcCCceeEEEeccC-----------------CCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeee---ee
Q 001310          869 LIYNARSSEVISKLEGH-----------------SKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRS---LQ  927 (1103)
Q Consensus       869 ~iwd~~~~~~~~~l~~h-----------------~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~---~~  927 (1103)
                      +++|+.++. +.++.+-                 -..-..++|+| ++.++++.+.++.|++||..++......-   ..
T Consensus       649 r~id~~~~~-V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~  727 (1057)
T PLN02919        649 REIDFVNET-VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER  727 (1057)
T ss_pred             EEEecCCCE-EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence            999988765 3333210                 11246799999 56677777888999999998865432100   00


Q ss_pred             cCCCcc---cCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEEEee------------CC--------CCcCeE
Q 001310          928 TPDGVM---TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWF------------PI--------SSVPIS  982 (1103)
Q Consensus       928 ~~~~~~---~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~~~~~------------~~--------h~~~v~  982 (1103)
                      ...+..   ........++|+|||+.|.++  .++.|++||+.++......-            ..        .-....
T Consensus       728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~  807 (1057)
T PLN02919        728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL  807 (1057)
T ss_pred             cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence            001110   011246789999999866664  67899999998765321100            00        011235


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccc-cCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEe
Q 001310          983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY-LRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGL 1061 (1103)
Q Consensus       983 ~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~ 1061 (1103)
                      +++|++||..+++-+.+++|++||..++........... ...+...         .+.--.+..++++|+ |+++++-+
T Consensus       808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~---------~a~l~~P~GIavd~d-G~lyVaDt  877 (1057)
T PLN02919        808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKAL---------KAQLSEPAGLALGEN-GRLFVADT  877 (1057)
T ss_pred             eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCccc---------ccccCCceEEEEeCC-CCEEEEEC
Confidence            889999999888888899999999998876543321100 0000000         000013457788887 78999989


Q ss_pred             cCCcEEEEccCCC
Q 001310         1062 TNGEVYVIEPNEP 1074 (1103)
Q Consensus      1062 ~dg~v~vw~~~~~ 1074 (1103)
                      .++.|++|++...
T Consensus       878 ~Nn~Irvid~~~~  890 (1057)
T PLN02919        878 NNSLIRYLDLNKG  890 (1057)
T ss_pred             CCCEEEEEECCCC
Confidence            9999999998554

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.00  E-value=7.9e-08  Score=107.61  Aligned_cols=208  Identities=14%  Similarity=0.022  Sum_probs=130.2

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcC---CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  400 (1103)
                      ....+.+.... .+....|||||+++++..+.   +..|.++|+.+|+...                    +....+.+.
T Consensus       178 g~~~~~~~~~~-~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt~~~g~~~  236 (419)
T PRK04043        178 LTYQKVIVKGG-LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IASSQGMLV  236 (419)
T ss_pred             CCceeEEccCC-CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------EecCCCcEE
Confidence            33344444433 77889999999864443332   3579999998887553                    222445566


Q ss_pred             EEEECCCCCEEEEEeC---CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC--ceEEEeCCCC
Q 001310          401 RVVWSPDGSLLGVAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK--TIKVWDAVTG  475 (1103)
Q Consensus       401 ~~~~spdg~~las~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~  475 (1103)
                      ..+|||||+.|+....   +..|.++|+.+++. +   .+..+........|+|||+.+++.+. ..+  .|.+.|+.+|
T Consensus       237 ~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~Sd-r~g~~~Iy~~dl~~g  311 (419)
T PRK04043        237 VSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVSD-RLGYPNIFMKKLNSG  311 (419)
T ss_pred             eeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEEC-CCCCceEEEEECCCC
Confidence            7889999998876532   34688888887752 2   23333333345689999997444432 233  6888898888


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECC---------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1103)
                      +..+.... ...  ...|  +++|..|+..+..         ..|.+.|++++.... +... .......|+|||+.++.
T Consensus       312 ~~~rlt~~-g~~--~~~~--SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        312 SVEQVVFH-GKN--NSSV--STYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             CeEeCccC-CCc--CceE--CCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCCCCEEEE
Confidence            76443321 111  1245  5577777766543         257777887765433 2222 23335889999999988


Q ss_pred             EecCCCCceeEEEEeCCCC
Q 001310          547 CGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~  565 (1103)
                      .... .+...+.+.++...
T Consensus       385 ~~~~-~~~~~L~~~~l~g~  402 (419)
T PRK04043        385 IKYL-GNQSALGIIRLNYN  402 (419)
T ss_pred             EEcc-CCcEEEEEEecCCC
Confidence            7654 33556788887543

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.99  E-value=0.0002  Score=82.50  Aligned_cols=581  Identities=10%  Similarity=0.070  Sum_probs=284.4

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC----
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----  407 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----  407 (1103)
                      |..+-..|+.+-++|  +|.+||.-|.=.+-.+.+-.....          ....++.  + ..-++|..+..-.+    
T Consensus       304 ge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs----------y~~ilet--~-~NLgPI~Dm~Vvd~d~q~  368 (1096)
T KOG1897|consen  304 GETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS----------YVVILET--F-VNLGPIVDMCVVDLDRQG  368 (1096)
T ss_pred             CCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc----------hhhhhhh--c-ccccceeeEEEEeccccC
Confidence            444455677777887  578888866555555544322210          0000111  1 12346776665432    


Q ss_pred             CCEEEEEe---CCCeEEEEEecCCCccccceEeccccccEEEEE--EecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310          408 GSLLGVAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       408 g~~las~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~--~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  482 (1103)
                      +..+++|+   .||++++..-.-+-.......+.| -..++.+.  +.+.-...++++-. + .-++..+...-......
T Consensus       369 q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~ylvlsf~-~-eTrvl~i~~e~ee~~~~  445 (1096)
T KOG1897|consen  369 QGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDNYLVLSFI-S-ETRVLNISEEVEETEDP  445 (1096)
T ss_pred             CceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCcEEEEEec-c-ceEEEEEccceEEeccc
Confidence            34566654   578999886544322222224455 34567776  44433321333322 2 23444433221111122


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      +.......+..+.. +++.|+-.. ...||+++-.  .....+.... .++....+.+...++.++.    .+.+...++
T Consensus       446 gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~-~~ti~~~~~n~sqVvvA~~----~~~l~y~~i  516 (1096)
T KOG1897|consen  446 GFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPG-KITIGVVSANASQVVVAGG----GLALFYLEI  516 (1096)
T ss_pred             cccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCC-ceEEEEEeecceEEEEecC----ccEEEEEEe
Confidence            22233333333222 122222221 2345555433  2222333333 3333444445555555543    233555566


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCC------CEEEEEeCCCcEEEE-ECCCCeeEEEEcCCCCC--CCCceEEEecC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAK------DQILAAGDDHVIKIW-DMNKVQLLTTIDAGGGL--PENPRICFNKN  633 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~iw-d~~~~~~~~~~~~~~~~--~~v~~v~~s~~  633 (1103)
                      ..+......+..  -...|.|+.++|-+      +.++.|..+..+.+. -..+...+.........  ..|....+-.|
T Consensus       517 ~~~~l~e~~~~~--~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d  594 (1096)
T KOG1897|consen  517 EDGGLREVSHKE--FEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD  594 (1096)
T ss_pred             eccceeeeeehe--ecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence            555522222211  23679999998752      256677766555443 33344433333222111  12344455567


Q ss_pred             CCEEEEEECCCeEEEEEcC--CCCeeEecc--cccccee----------eeEEecCCceeeeeccCCceEecCCC-----
Q 001310          634 GTLLAVIANENRIKILETP--ESNSVDAAG--VLSDNLR----------KLSVNPISTVTGAGIANGSVSVNEDP-----  694 (1103)
Q Consensus       634 g~~l~~~~~dg~i~iw~~~--~~~~~~~~~--~~~~~i~----------~~~~~~~~~~~~~~~~~~~~~~~~~~-----  694 (1103)
                      ..+|.++..||.+.-+-+.  ++..-...+  -...++.          .+-...+...+ .-..++...|.+-.     
T Consensus       595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~v-iY~~n~kLv~spls~kev~  673 (1096)
T KOG1897|consen  595 IHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTV-IYSSNGKLVYSPLSLKEVN  673 (1096)
T ss_pred             ceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEE-EEecCCcEEEeccchHHhh
Confidence            8899999999998776554  332211110  0111111          11111111111 11112222221110     


Q ss_pred             ------CCC-CccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310          695 ------KED-VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1103)
Q Consensus       695 ------s~d-~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~  767 (1103)
                            ++. +..++++ ..+.+++..++.-.....+.+  |   -....+.+++.+....+.+.+.......=      
T Consensus       674 ~~c~f~s~a~~d~l~~~-~~~~l~i~tid~iqkl~irtv--p---l~~~prrI~~q~~sl~~~v~s~r~e~~~~------  741 (1096)
T KOG1897|consen  674 HMCPFNSDAYPDSLASA-NGGALTIGTIDEIQKLHIRTV--P---LGESPRRICYQESSLTFGVLSNRIESSAE------  741 (1096)
T ss_pred             hhcccccccCCceEEEe-cCCceEEEEecchhhcceeee--c---CCCChhheEecccceEEEEEecccccchh------
Confidence                  111 1122222 224455544443222222222  1   12344566666644444444433211100      


Q ss_pred             cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC-CCEEEEEc-----------CCeEEEEEcCCcee
Q 001310          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN-DAYLFSAS-----------GGVISLYIVMTFKT  835 (1103)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d-~~~l~~~~-----------dg~i~iwd~~~~~~  835 (1103)
                        ..+......-++++|..+-+.+....+...+....+.+..|..| +.++++|.           .|.|.++....++.
T Consensus       742 --~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~  819 (1096)
T KOG1897|consen  742 --YYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNS  819 (1096)
T ss_pred             --hcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCc
Confidence              00111112235667776666555544433223334444557777 77888773           26789998887444


Q ss_pred             eEEecCC--CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEE
Q 001310          836 ILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW  913 (1103)
Q Consensus       836 ~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iw  913 (1103)
                      ++....+  .+.+.++..-  +|++||.  -+..|++|+..+.+.++.-..|..++..+...-.|..++.|.--+.+.+-
T Consensus       820 L~~v~e~~v~Gav~aL~~f--ngkllA~--In~~vrLye~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll  895 (1096)
T KOG1897|consen  820 LELVAETVVKGAVYALVEF--NGKLLAG--INQSVRLYEWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLL  895 (1096)
T ss_pred             eeeeeeeeeccceeehhhh--CCeEEEe--cCcEEEEEEccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence            4443322  2344444432  5667663  45689999999987777777788999999999999999999988877766


Q ss_pred             EcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001310          914 DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  965 (1103)
Q Consensus       914 d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~  965 (1103)
                      -....+-   ......+...  +.+++++.+-.+..++.+-.+|.+++...+
T Consensus       896 ~y~~~eg---~f~evArD~~--p~Wmtaveil~~d~ylgae~~gNlf~v~~d  942 (1096)
T KOG1897|consen  896 QYKGDEG---NFEEVARDYN--PNWMTAVEILDDDTYLGAENSGNLFTVRKD  942 (1096)
T ss_pred             EEeccCC---ceEEeehhhC--ccceeeEEEecCceEEeecccccEEEEEec
Confidence            5554321   1111222111  147889999888888888777777766554

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.98  E-value=2.1e-07  Score=91.67  Aligned_cols=208  Identities=18%  Similarity=0.165  Sum_probs=139.9

Q ss_pred             EEEecCCCEEEEEcCCeEEEEEcCCc--eeeE---EecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310          808 FALSKNDAYLFSASGGVISLYIVMTF--KTIL---TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1103)
Q Consensus       808 l~~s~d~~~l~~~~dg~i~iwd~~~~--~~~~---~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1103)
                      ++.+.||++||+..|..|.|-.....  ..+.   ..+.....=+.++||| |+.+||.+...|+|+++|+.... +..+
T Consensus         3 ~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~-lf~I   80 (282)
T PF15492_consen    3 LALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSE-LFVI   80 (282)
T ss_pred             eeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccce-eEEc
Confidence            57789999999999988888766532  1112   2233445668899999 99999999999999999998543 3333


Q ss_pred             cc-------CCCCEEEEEEccCC------CEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310          883 EG-------HSKRVTGLVFSDAL------NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1103)
Q Consensus       883 ~~-------h~~~V~~l~~s~dg------~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  949 (1103)
                      ..       -...|..|.|-+-.      ..|.....+|.++-+-+..+....-.....+.-.......|.++.++|..+
T Consensus        81 ~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~  160 (282)
T PF15492_consen   81 PPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHR  160 (282)
T ss_pred             CcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCC
Confidence            22       23567777775432      246666778888877764432111111111111111224799999999999


Q ss_pred             EEEEEe-----CC-------eEEEEECCCceEEEE-------------------------ee---CCCCcCeEEEEEccC
Q 001310          950 RFLLVH-----ET-------HLAIYEAEELTCLKQ-------------------------WF---PISSVPISQATFSCD  989 (1103)
Q Consensus       950 ~l~~~~-----d~-------~v~iwd~~~~~~~~~-------------------------~~---~~h~~~v~~l~fs~d  989 (1103)
                      +|++|+     ++       -+.-|.+-++..-..                         ++   ......|..|..|||
T Consensus       161 LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPd  240 (282)
T PF15492_consen  161 LLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPD  240 (282)
T ss_pred             EEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCC
Confidence            998841     11       366776643221100                         00   112678899999999


Q ss_pred             CCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          990 CRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       990 g~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      |+.||+...+|.|.+|++.+..+.+.+.
T Consensus       241 g~~La~ih~sG~lsLW~iPsL~~~~~W~  268 (282)
T PF15492_consen  241 GSLLACIHFSGSLSLWEIPSLRLQRSWK  268 (282)
T ss_pred             CCEEEEEEcCCeEEEEecCcchhhcccc
Confidence            9999999999999999999999988877

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.98  E-value=2.5e-09  Score=112.22  Aligned_cols=243  Identities=14%  Similarity=0.221  Sum_probs=169.3

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC-Cccc---cceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG-SDAR---QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~-~~~~---~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i  467 (1103)
                      +.||...|.+++--.+.+-+++++.|++|++|.++.. ..+.   .+.++..|..+|.++.|-.+.+  .++++  ||.|
T Consensus       731 f~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~gi  806 (1034)
T KOG4190|consen  731 FTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGGI  806 (1034)
T ss_pred             ccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCcc
Confidence            7899999999988888889999999999999999742 2222   3457789999999999999987  56654  8899


Q ss_pred             EEEeCCCCceeEEeec--CCCceEEEEeeecCCccEEEEE-ECCCeEEEEEcCCCCeeEEec-----CCCccEEEEEEcc
Q 001310          468 KVWDAVTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYD-----APGLGCTRMAYSA  539 (1103)
Q Consensus       468 ~iwd~~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~-----~~~~~i~~~~~s~  539 (1103)
                      .+||.--|+.+..+..  ..+.+..+...++-+...++.+ +...+|+++|.+..+-...++     +....+.+++..+
T Consensus       807 HlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa~  886 (1034)
T KOG4190|consen  807 HLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVAD  886 (1034)
T ss_pred             eeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEecc
Confidence            9999988888764421  1122222222233344555555 788999999988776554443     3345688999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEE-EECCCCeeEEEEcC
Q 001310          540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKI-WDMNKVQLLTTIDA  618 (1103)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~~~  618 (1103)
                      .|+.++++-.    +|.|.+.|.++|+.+..++...   .....++ .|..+.++....|.++.+ |..-+|........
T Consensus       887 ~GN~lAa~LS----nGci~~LDaR~G~vINswrpme---cdllqla-apsdq~L~~saldHslaVnWhaldgimh~q~kp  958 (1034)
T KOG4190|consen  887 KGNKLAAALS----NGCIAILDARNGKVINSWRPME---CDLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQDKP  958 (1034)
T ss_pred             CcchhhHHhc----CCcEEEEecCCCceeccCCccc---chhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeeccCC
Confidence            9999998865    6679999999999887776554   3333333 355566777778889988 98887766655443


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310          619 GGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1103)
Q Consensus       619 ~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~  650 (1103)
                      +..    ..--.-.-|.-++++...+.+.+|.
T Consensus       959 ppe----pahflqsvgpSLV~a~~Gn~lgVYa  986 (1034)
T KOG4190|consen  959 PPE----PAHFLQSVGPSLVTAQNGNILGVYA  986 (1034)
T ss_pred             CCc----chhhhhccCceeEEeccCcEEEEEe
Confidence            211    1111112355666666666677764

>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]

Probab=98.97  E-value=1.2e-07  Score=92.82  Aligned_cols=198  Identities=15%  Similarity=0.100  Sum_probs=133.7

Q ss_pred             eeEEEEecCCCEEEEEc-CCeEEEEEcCCcee--eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CceeEE
Q 001310          805 VPCFALSKNDAYLFSAS-GGVISLYIVMTFKT--ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVIS  880 (1103)
Q Consensus       805 v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~--~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~~  880 (1103)
                      ..++.|++.+..+++.. +|.+.+-+......  .+..+.|.-++....|+..+.+++.+|+.|+.+..||++ .++.+.
T Consensus       124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~  203 (339)
T KOG0280|consen  124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIW  203 (339)
T ss_pred             eeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceee
Confidence            45677888888877775 68888665554433  347888999999999998777899999999999999999 445554


Q ss_pred             E-eccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCC-CceeeeeeeecCCCcccCCCCceEEEEcCCCC--EEEEEe
Q 001310          881 K-LEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT--RFLLVH  955 (1103)
Q Consensus       881 ~-l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~--~l~~~~  955 (1103)
                      . -+-|...|.++.-+| ++.+++||+.|..|++||..+ ++.     +  ..+  ...+.|..+..+|.-.  .|+++.
T Consensus       204 ~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kP-----l--~~~--~v~GGVWRi~~~p~~~~~lL~~CM  274 (339)
T KOG0280|consen  204 HNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKP-----L--FKA--KVGGGVWRIKHHPEIFHRLLAACM  274 (339)
T ss_pred             ecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCc-----c--ccC--ccccceEEEEecchhhhHHHHHHH
Confidence            4 455889999998886 578999999999999999985 221     1  111  1125799999999644  444444


Q ss_pred             CCeEEEEECCCceE----EEEeeCCCCcCeEEEEEccCCCEEEEEe-cCCcEE-EEeCCCce
Q 001310          956 ETHLAIYEAEELTC----LKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLS-IHEASNLE 1011 (1103)
Q Consensus       956 d~~v~iwd~~~~~~----~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~-vWd~~~~~ 1011 (1103)
                      -+..+|-+...+..    +......|.+-...-.|..-..+|||++ .|+.++ +|-..++.
T Consensus       275 h~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~  336 (339)
T KOG0280|consen  275 HNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGE  336 (339)
T ss_pred             hcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCC
Confidence            44455555543322    1222344544444444533345688765 566644 66655443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.92  E-value=4.8e-08  Score=108.12  Aligned_cols=506  Identities=12%  Similarity=0.111  Sum_probs=260.1

Q ss_pred             ceEEEecCCCceEEEEEcC----CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          337 PMSMDFHPVQHTLLLVGTN----VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       337 V~~v~~spdg~~llasgs~----d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      -+...|+|... ++|+++-    .|+|.||- ++|++.+..+.+                    -.+++++|+|..-.||
T Consensus        18 sti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P--------------------~hatSLCWHpe~~vLa   75 (1416)
T KOG3617|consen   18 STISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVTYP--------------------VHATSLCWHPEEFVLA   75 (1416)
T ss_pred             ccccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccccc--------------------eehhhhccChHHHHHh
Confidence            34567888886 6777753    47888886 667755432211                    2355699999999999


Q ss_pred             EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE--eecC--CCce
Q 001310          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--FEGH--GAPV  488 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--~~~~--~~~v  488 (1103)
                      .|..-|.+.+|...+.+.-.   ....|..+|..+.||++|.  .++++..-|.|.+|.......++.  +-.|  ...+
T Consensus        76 ~gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~l  150 (1416)
T KOG3617|consen   76 QGWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQL  150 (1416)
T ss_pred             hccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEEeeeccccccchhhhhHhhcee
Confidence            99999999999988754222   3457999999999999999  899999999999998764332221  1122  2334


Q ss_pred             EEEEeeecCCcc------EEEEEECCCeEE-EEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310          489 YSLCPHAKENIH------FIFSISVDGKIK-AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       489 ~~~~~~~~~~~~------~l~s~~~dg~i~-iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1103)
                      +-++|.-+.++.      ..+..+.+..+- .+++..........        -.-.|+|..++.++.    +|+|+-.|
T Consensus       151 tl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~--------ksgv~~g~~F~~~~~----~GtVyyvd  218 (1416)
T KOG3617|consen  151 TLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDE--------KSGVPKGTEFLFAGK----SGTVYYVD  218 (1416)
T ss_pred             eEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccc--------ccCCCCCcEEEEEcC----CceEEEEc
Confidence            444544333321      123333333332 33333111111110        012467777777765    45576666


Q ss_pred             CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC-CCC---------------ee-------------
Q 001310          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM-NKV---------------QL-------------  612 (1103)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~-~~~---------------~~-------------  612 (1103)
                      - .|+.....+...    . ..+-|.+...-+++.-.+-.+.++-+ .+|               ..             
T Consensus       219 q-~g~~~~V~k~dS----~-vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~GgrqGgiA~sEssGvL  292 (1416)
T KOG3617|consen  219 Q-NGRQRTVHKLDS----E-VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGGRQGGIACSESSGVL  292 (1416)
T ss_pred             C-CCcEEEEEEccc----h-HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCCccCccccccccccc
Confidence            3 343333332211    0 11112222122222111111111110 000               00             


Q ss_pred             --EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC-------eeEe---ccccccceeeeEEecCCceee
Q 001310          613 --LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN-------SVDA---AGVLSDNLRKLSVNPISTVTG  680 (1103)
Q Consensus       613 --~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~-------~~~~---~~~~~~~i~~~~~~~~~~~~~  680 (1103)
                        ...+... ....+.|++++..+..+..|...|.+.+|.-....       -...   .+.....|+.+.|+|..+.++
T Consensus       293 r~~eKyg~e-~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~g~p~~d~w~l~~~~e~~g~I~~i~Wg~~k~~~a  371 (1416)
T KOG3617|consen  293 RKSEKYGLE-LGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQGDPTIDVWTLNGKRESLGKISLIRWGPIKSTAA  371 (1416)
T ss_pred             cCCcchhhh-cCCceEEEEEeccceEEEecccCCcEEEeeecCccccCCCCcceEEecCchhhccceEEEEeccccchhh
Confidence              0011111 12357899999999999999999999999654331       1112   222334455555655433332


Q ss_pred             eeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEE
Q 001310          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLM  760 (1103)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~v  760 (1103)
                      +.+....+.+...     ..+                             ..|.....++.-+..+-.|..+.       
T Consensus       372 vn~~~~v~ll~E~-----~l~-----------------------------~~h~~~~~A~q~ss~S~~L~hc~-------  410 (1416)
T KOG3617|consen  372 VNTEEDVVLLGEN-----SLT-----------------------------VKHRGKMAAIQTSSNSFTLLHCT-------  410 (1416)
T ss_pred             hhhhhheeeeccC-----chH-----------------------------HHHhhhhHHhhhcCCceEEEeec-------
Confidence            2222111111000     000                             00111111111111111011110       


Q ss_pred             eecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEE--
Q 001310          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT--  838 (1103)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~--  838 (1103)
                                                +|.. ..  +   ...-++..++.+  ...++.....+|..|++.+...+..  
T Consensus       411 --------------------------sGv~-~~--l---~~~~~~~gi~l~--e~~lvvwNgr~v~~y~lq~SG~la~~~  456 (1416)
T KOG3617|consen  411 --------------------------SGVS-QD--L---KLSIPSAGICLG--EKQLVVWNGRTVVTYDLQTSGSLATIQ  456 (1416)
T ss_pred             --------------------------cchh-hh--h---hhccchhhheec--cceEEEEcCceEEEEEecccchhHHHh
Confidence                                      1100 00  0   012233344443  3456666678889999863321111  


Q ss_pred             ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe--ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 001310          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  916 (1103)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l--~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~  916 (1103)
                      ........+++++..  .++...++.+  |.++.+. |...+.+  ..-.+.|.-+.++  |.+++.....+.++-+|+.
T Consensus       457 ~~tF~cet~~la~~n--qN~ycies~~--Vfvrt~q-Gtv~q~i~~seiEg~~~~ldi~--g~~l~v~t~~~~~k~~dvs  529 (1416)
T KOG3617|consen  457 CTTFSCETTSLAIVN--QNLYCIESDK--VFVRTLQ-GTVRQEISLSEIEGVVVLLDIM--GELLIVQTVSTVAKRLDVS  529 (1416)
T ss_pred             hhhhccccchHhHhh--cceEEeccCc--EEEEecc-hhhhhhccchhccCceehhhhc--cceeEEeehHHHHHHhhhh
Confidence            112223445556553  4455555544  4554443 3333322  2234555555554  7889888888888888888


Q ss_pred             CCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE--E-eC----CeEEEEECCCceEE
Q 001310          917 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL--V-HE----THLAIYEAEELTCL  970 (1103)
Q Consensus       917 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~--~-~d----~~v~iwd~~~~~~~  970 (1103)
                      ..+...........+-.+..+.+..+..+..|..+.+  + .+    .++..||.++++..
T Consensus       530 r~e~ka~~~~~s~~~~~d~~g~~~~~~c~ssgS~~~v~~a~~~~~pisTl~~~DFe~s~~~  590 (1416)
T KOG3617|consen  530 RAELKAVSYFSSDRGMTDTQGYETQAECASSGSGRPVTAAARKMAPISTLFCWDFEQSRFQ  590 (1416)
T ss_pred             hhcccccccccccccccCCcCceEEEeeccCCCCcccchhhccCCCcceeEeeccchhhHH
Confidence            7665554444444444444457788888887776654  2 22    47999999877653

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.91  E-value=4.6e-09  Score=125.33  Aligned_cols=200  Identities=16%  Similarity=0.247  Sum_probs=159.7

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  473 (1103)
                      .|-..|.++.=+|...+.++|+.||.|++|.+..++.+....+. |. ..|+.+.|+.+|.  .+..+..||.+.+|.+.
T Consensus      2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred             cccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecccC
Confidence            35578888999999999999999999999999998877654432 33 8899999999999  68888899999999965


Q ss_pred             CCceeEEeecCCCceEEEEeeecCCccEEEEEE---CCCeEEEEEcCCCCee-EEecCCCccEEEEEEccCCCEEEEEec
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                       .++....+.|.....+..|..    ..+++++   .++.+.+||..-.... ..-..|.+.++++++.|..+.+++|+.
T Consensus      2282 -pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr 2356 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGR 2356 (2439)
T ss_pred             -CcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCC
Confidence             677777888988888888754    3456553   5678999986543322 233778899999999999999999987


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  619 (1103)
                          +|.|++||++..+.++.++.            +. ...++++|+..|.++||++.....+..++..
T Consensus      2357 ----~G~v~l~D~rqrql~h~~~~------------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~e 2409 (2439)
T KOG1064|consen 2357 ----KGEVCLFDIRQRQLRHTFQA------------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPSE 2409 (2439)
T ss_pred             ----cCcEEEeehHHHHHHHHhhh------------hh-hhheeeccCcccceEEEEccccchhhcCchh
Confidence                55599999988777665543            33 4578999999999999999998888777643

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.90  E-value=9.1e-09  Score=112.13  Aligned_cols=211  Identities=16%  Similarity=0.265  Sum_probs=148.7

Q ss_pred             eeeccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310          389 TALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       389 ~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i  467 (1103)
                      ..++.||+..|+.+.|.|. -..||+++.|..+..||+.+..  ..+.....-......++|+-...  .+...+..+.|
T Consensus       107 ef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--~p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i  182 (1081)
T KOG0309|consen  107 EFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--RPFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDI  182 (1081)
T ss_pred             EEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--cceeeeecccccCceeeecccCc--chhhhccCCce
Confidence            3458899999999999995 5678999999999999998865  33334444555677889987665  45666667789


Q ss_pred             EEEeCCCC-ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-cCCCccEEEEEEccCCCEEE
Q 001310          468 KVWDAVTG-SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       468 ~iwd~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~  545 (1103)
                      .+||...| .++..+++|...|+.+.|..... ..+.+.+.||+|++||.+........ .....++..-++.|-|.-..
T Consensus       183 ~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~  261 (1081)
T KOG0309|consen  183 FVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYC  261 (1081)
T ss_pred             EEEeccCCCcceEEecccceeeehHHHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeE
Confidence            99999876 56788899999999998754322 46889999999999999876544322 23344666677777655443


Q ss_pred             EEecCCCCceeEEE---------EeCCC-CeeEEEEecccccCCceEEEEEcCC----------CCEEEEEeCCCcEEEE
Q 001310          546 SCGTSKEGESFLVE---------WNESE-GAIKRTYQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIW  605 (1103)
Q Consensus       546 ~~~~~~~~~~~i~i---------wd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iw  605 (1103)
                      .--..+  .+.+.+         |+..+ .+.+..|.||.   +.|....|-..          .-+|++-+.|.++++|
T Consensus       262 ~mp~~G--~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~---D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlW  336 (1081)
T KOG0309|consen  262 IMPMVG--GNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD---DVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLW  336 (1081)
T ss_pred             eccccC--CeeeeeccccchhhhhccccCCcceeeecCcc---hHHHHHhhhhcccccCCCCccceeEEEeecCCceEee
Confidence            332221  223433         33332 35788898888   66655444322          2368999999999999


Q ss_pred             ECCC
Q 001310          606 DMNK  609 (1103)
Q Consensus       606 d~~~  609 (1103)
                      -+.+
T Consensus       337 pI~~  340 (1081)
T KOG0309|consen  337 PIDS  340 (1081)
T ss_pred             eccH
Confidence            8764

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.88  E-value=4e-06  Score=94.86  Aligned_cols=212  Identities=10%  Similarity=0.068  Sum_probs=123.3

Q ss_pred             cCCeEEEEEcCCceeeEEecCCCCC-----eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC-------C
Q 001310          821 SGGVISLYIVMTFKTILTIMPPSPT-----ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-------R  888 (1103)
Q Consensus       821 ~dg~i~iwd~~~~~~~~~~~~~~~~-----i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-------~  888 (1103)
                      .++.+..+|..+|+.+.........     ..+.+..  ++ .++.++.+|.+..+|..+|+.+........       .
T Consensus       168 ~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~~-~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~  244 (394)
T PRK11138        168 SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--FG-GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDR  244 (394)
T ss_pred             CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--CC-EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhc
Confidence            3566777777777776665432111     0111222  22 466678899999999999987665431100       0


Q ss_pred             EEEEEEcc--CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC
Q 001310          889 VTGLVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE  966 (1103)
Q Consensus       889 V~~l~~s~--dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~  966 (1103)
                      ...+.-+|  .+..+..++.+|.+..+|..+|+..-....    +      ....+.. .++...+...++.++.+|..+
T Consensus       245 ~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~----~------~~~~~~~-~~~~vy~~~~~g~l~ald~~t  313 (394)
T PRK11138        245 LVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY----G------SVNDFAV-DGGRIYLVDQNDRVYALDTRG  313 (394)
T ss_pred             ccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC----C------CccCcEE-ECCEEEEEcCCCeEEEEECCC
Confidence            01111122  245666677899999999999875432211    1      1111221 234444446889999999999


Q ss_pred             ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEE
Q 001310          967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHA 1046 (1103)
Q Consensus       967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 1046 (1103)
                      |+.+............+...  .+.+|++++.||.+.+.|..+|+.+.+.....                   ..+.+.-
T Consensus       314 G~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~-------------------~~~~s~P  372 (394)
T PRK11138        314 GVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVDS-------------------SGFLSEP  372 (394)
T ss_pred             CcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCC-------------------CcceeCC
Confidence            98765422111111222222  24567778899999999999999887765210                   0011100


Q ss_pred             EEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1047 IAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1047 ~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      +. .   +..|+.++.||.|+.+++
T Consensus       373 ~~-~---~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        373 VV-A---DDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EE-E---CCEEEEEeCCceEEEEeC
Confidence            11 1   467888999999998875

>KOG4190 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.88  E-value=1.4e-08  Score=106.80  Aligned_cols=295  Identities=10%  Similarity=0.125  Sum_probs=186.8

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      -.+..+.||+..|.+++--.+.+. +++++.|.+|++|.+.. |..+.+        +.|.     ..+..|+.+|..+.
T Consensus       726 irL~nf~GH~~~iRai~AidNENS-FiSASkDKTVKLWSik~EgD~~~t--------saCQ-----fTY~aHkk~i~~ig  791 (1034)
T KOG4190|consen  726 IRLCNFTGHQEKIRAIAAIDNENS-FISASKDKTVKLWSIKPEGDEIGT--------SACQ-----FTYQAHKKPIHDIG  791 (1034)
T ss_pred             eeeecccCcHHHhHHHHhcccccc-eeeccCCceEEEEEeccccCcccc--------ceee-----eEhhhccCccccee
Confidence            345677899999999887666663 78999999999999864 222222        1122     22667999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC-CCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  482 (1103)
                      |-.|-++++++  ||.|.+||.--|..+.+...-..| +.+..+..-++ .+.++++.++...+|+++|.+.++-...++
T Consensus       792 fL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~-~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k  868 (1034)
T KOG4190|consen  792 FLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKE-GAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK  868 (1034)
T ss_pred             eeeccceeeec--cCcceeecccccchhHhhhcCccc-CCCceeEecccCcchheeeeccchhhheeeecccccceeeEE
Confidence            99999999886  777999999887765533221222 23333333344 344355556889999999998887665554


Q ss_pred             -----cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          483 -----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       483 -----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                           +..+.+.+++..+  .|+.++.+-..|+|.+.|.+++..+..+.........++ .|..+.|+....    +..+
T Consensus       869 Vcna~~Pna~~R~iaVa~--~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sal----dHsl  941 (1034)
T KOG4190|consen  869 VCNAPGPNALTRAIAVAD--KGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSAL----DHSL  941 (1034)
T ss_pred             eccCCCCchheeEEEecc--CcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcc----ccee
Confidence                 3445678888754  567899999999999999998887665554443333333 244445554432    3446


Q ss_pred             EE-EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC----CCeeEEEEcCCCCCCCCceEEEec
Q 001310          558 VE-WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN----KVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       558 ~i-wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~----~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      .+ |...+|......+...   .+..-  .-.-|..++++.....+.+|--.    ....+..+....-....++++.-|
T Consensus       942 aVnWhaldgimh~q~kppp---epahf--lqsvgpSLV~a~~Gn~lgVYad~a~~ha~stitKiR~d~f~G~lTala~LP 1016 (1034)
T KOG4190|consen  942 AVNWHALDGIMHLQDKPPP---EPAHF--LQSVGPSLVTAQNGNILGVYADSAELHAESTITKIRPDEFPGTLTALAPLP 1016 (1034)
T ss_pred             EeeehhcCCeeeeccCCCC---cchhh--hhccCceeEEeccCcEEEEEecchhhhhhhhhccccccccCCccceeeecc
Confidence            55 8776665544443322   11111  11235567777766677777421    112223333322223356777777


Q ss_pred             CCCEEEEEECCCeEEE
Q 001310          633 NGTLLAVIANENRIKI  648 (1103)
Q Consensus       633 ~g~~l~~~~~dg~i~i  648 (1103)
                      -..-+..|...|.|.+
T Consensus      1017 LN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 1017 LNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred             ccchhhccCCCCceee
Confidence            6666777888887765

>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]

Probab=98.87  E-value=1.2e-08  Score=121.98  Aligned_cols=226  Identities=13%  Similarity=0.180  Sum_probs=167.0

Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec-CCC
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGA  486 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~  486 (1103)
                      +...+....++...-|..+.+..     .+..+-..|.++.=+|...  +.+||+.||.|++|....++.+..++. ...
T Consensus      2180 s~~~~~~n~~~~~~tq~~~~~~~-----~~k~~v~~v~r~~sHp~~~--~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s 2252 (2439)
T KOG1064|consen 2180 SNRFTPSNLPWLGSTQTSRGASV-----MIKHPVENVRRMTSHPSDP--YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNS 2252 (2439)
T ss_pred             cccCCcccCCccccceeccccee-----EeecccCceeeecCCCCCc--eEEecCCCceEEEEeccCCCeEEEeeccCcc
Confidence            34444444455555565554432     2344566788888788777  789999999999999999998887742 337


Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1103)
                      .|+.+.|+  .+|..+..+..||.+.+|... .+.......|......+.|-.  ..+++++.+.+ ++.+.+||..-..
T Consensus      2253 ~vtr~~f~--~qGnk~~i~d~dg~l~l~q~~-pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d-~~n~~lwDtl~~~ 2326 (2439)
T KOG1064|consen 2253 RVTRSRFN--HQGNKFGIVDGDGDLSLWQAS-PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSD-NRNVCLWDTLLPP 2326 (2439)
T ss_pred             hhhhhhhc--ccCCceeeeccCCceeecccC-CcceeccccCCccccceeeee--hhhhccccCCC-CCcccchhcccCc
Confidence            78888884  466788899999999999877 455556677777777777766  66777766555 6779999975322


Q ss_pred             eEE-EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310          567 IKR-TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1103)
Q Consensus       567 ~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~  645 (1103)
                      ... .-..|.   +.++++++.|....+++||.+|.|++||++..++.+.++.           +. ...++++|+..|.
T Consensus      2327 ~~s~v~~~H~---~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~-----------~~-~~~~f~~~ss~g~ 2391 (2439)
T KOG1064|consen 2327 MNSLVHTCHD---GGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA-----------LD-TREYFVTGSSEGN 2391 (2439)
T ss_pred             ccceeeeecC---CCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh-----------hh-hhheeeccCcccc
Confidence            111 114444   8999999999999999999999999999998887776653           33 4668999999999


Q ss_pred             EEEEEcCCCCeeEecc
Q 001310          646 IKILETPESNSVDAAG  661 (1103)
Q Consensus       646 i~iw~~~~~~~~~~~~  661 (1103)
                      ++||++..-..+..+.
T Consensus      2392 ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2392 IKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred             eEEEEccccchhhcCc
Confidence            9999998776555543

>PRK04043 tolB translocation protein TolB; Provisional

Probab=98.87  E-value=1.4e-06  Score=97.72  Aligned_cols=213  Identities=9%  Similarity=-0.001  Sum_probs=131.4

Q ss_pred             eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC-EEEEEeCC---CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCC
Q 001310          824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDD---STILIYNARSSEVISKLEGHSKRVTGLVFSDALN  899 (1103)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~d---g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~  899 (1103)
                      .|.+-|.... ..+.+.... ......|+| |++ .++..+.+   ..|+++|+.+++...... ..+......|||||+
T Consensus       170 ~l~~~d~dg~-~~~~~~~~~-~~~~p~wSp-DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~  245 (419)
T PRK04043        170 NIVLADYTLT-YQKVIVKGG-LNIFPKWAN-KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGS  245 (419)
T ss_pred             eEEEECCCCC-ceeEEccCC-CeEeEEECC-CCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCC
Confidence            3555555433 233333333 778899999 676 36654433   579999999887544333 455567788999998


Q ss_pred             EEEEE-eC--CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC----eEEEEECCCceEEEE
Q 001310          900 ILVSS-GG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ  972 (1103)
Q Consensus       900 ~l~s~-s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~----~v~iwd~~~~~~~~~  972 (1103)
                      .|+.. +.  +..|.++|+.+++...   +....+      ......|||||+.|+..++.    .|+++|+.+++....
T Consensus       246 ~la~~~~~~g~~~Iy~~dl~~g~~~~---LT~~~~------~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rl  316 (419)
T PRK04043        246 KLLLTMAPKGQPDIYLYDTNTKTLTQ---ITNYPG------IDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQV  316 (419)
T ss_pred             EEEEEEccCCCcEEEEEECCCCcEEE---cccCCC------ccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeC
Confidence            77644 33  3568888988876322   222221      12356899999999875443    799999998877543


Q ss_pred             eeCCCCcCeEEEEEccCCCEEEEEecC---------CcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCcee
Q 001310          973 WFPISSVPISQATFSCDCRMVFTSFVD---------GTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVY 1043 (1103)
Q Consensus       973 ~~~~h~~~v~~l~fs~dg~~l~t~~~d---------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 1043 (1103)
                      ...+.    ....|||||++|+..+..         ..|.+.|++++... .+...                   .. . 
T Consensus       317 t~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~-------------------~~-~-  370 (419)
T PRK04043        317 VFHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTAN-------------------GV-N-  370 (419)
T ss_pred             ccCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCC-------------------CC-c-
Confidence            33222    124899999998876643         36888888888643 22211                   00 0 


Q ss_pred             eEEEEECCCCCcEEEEEecC-CcEEEEccCCCCCC
Q 001310         1044 PHAIAAHPLKPTQFAVGLTN-GEVYVIEPNEPGDT 1077 (1103)
Q Consensus      1044 ~~~~~~~p~~~~~l~~~~~d-g~v~vw~~~~~~~~ 1077 (1103)
                       ....|+|| |..|+....+ +.-.+|-+...+.+
T Consensus       371 -~~p~~SPD-G~~I~f~~~~~~~~~L~~~~l~g~~  403 (419)
T PRK04043        371 -QFPRFSSD-GGSIMFIKYLGNQSALGIIRLNYNK  403 (419)
T ss_pred             -CCeEECCC-CCEEEEEEccCCcEEEEEEecCCCe
Confidence             13578898 6666555543 45456665445543

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.86  E-value=1.8e-06  Score=88.36  Aligned_cols=183  Identities=15%  Similarity=0.163  Sum_probs=127.9

Q ss_pred             EEEEecCCCEEEEEc------CCeEEEEEcC-CceeeEEecCCCCCeeEEEEcCCCCCEEEEEe----------------
Q 001310          807 CFALSKNDAYLFSAS------GGVISLYIVM-TFKTILTIMPPSPTATSLAFNPHDNNVIAIGM----------------  863 (1103)
Q Consensus       807 ~l~~s~d~~~l~~~~------dg~i~iwd~~-~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~----------------  863 (1103)
                      --+||+||++|.+..      .|.|-|||.. +.+.+.++..+.-.-..+.+.| |++.|+++.                
T Consensus        55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl  133 (305)
T PF07433_consen   55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL  133 (305)
T ss_pred             CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence            368999999999884      3679999999 7888889988777778889999 787777652                


Q ss_pred             --CCCeEEEEEcCCceeEEE--e--ccCCCCEEEEEEccCCCEEEEEeCCC-------eEEEEEcCCCceeeeeeeecCC
Q 001310          864 --DDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALNILVSSGGDA-------QIFVWDVDGWGIQTCRSLQTPD  930 (1103)
Q Consensus       864 --~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~~l~s~s~dg-------~I~iwd~~~~~~~~~~~~~~~~  930 (1103)
                        .+-++...|..+|+.+.+  +  .-|...|..|++.++|..++-.-..|       .|-+++-...  ..  .+..+.
T Consensus       134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~--~~~~p~  209 (305)
T PF07433_consen  134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LR--LLPAPE  209 (305)
T ss_pred             hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ce--eccCCh
Confidence              223566678888988876  4  33888899999999987766543333       2444443331  11  111111


Q ss_pred             Cc-ccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEec
Q 001310          931 GV-MTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFV  998 (1103)
Q Consensus       931 ~~-~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~  998 (1103)
                      .. ....+.+-+++++++|.+++++  ..+.+.+||..+++.+....   -..+..++-.+++ ++++.+.
T Consensus       210 ~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~---l~D~cGva~~~~~-f~~ssG~  276 (305)
T PF07433_consen  210 EQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP---LPDACGVAPTDDG-FLVSSGQ  276 (305)
T ss_pred             HHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc---cCceeeeeecCCc-eEEeCCC
Confidence            11 1122478899999999999885  56789999999999987633   3355666766666 6666553

>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]

Probab=98.85  E-value=0.00062  Score=78.67  Aligned_cols=607  Identities=11%  Similarity=0.069  Sum_probs=300.0

Q ss_pred             EECCCCCEEEEEeCCCeEEEEEec-CCCcccc---ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQ---QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~-~~~~~~~---~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      ....+|...+.|..+|.+...-+. +++....   ....-+...-..|+..-++|   .++.||.-|.=++-.+.+..-.
T Consensus       264 ~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~s~~~lkve~lge~siassi~~L~ng---~lFvGS~~gdSqLi~L~~e~d~  340 (1096)
T KOG1897|consen  264 RVDLQGSRYLLGDEDGMLFKLLLSHTGETVSGLDLKVEYLGETSIASSINYLDNG---VLFVGSRFGDSQLIKLNTEPDV  340 (1096)
T ss_pred             cccCCccEEEEecCCCcEEEEEeecccccccceEEEEEecCCcchhhhhhcccCc---eEEEeccCCceeeEEccccCCC
Confidence            345678888888888877655554 4443322   12233455556777777777   5888887776566555433221


Q ss_pred             -------EEeecCCCceEEEEeeecC--CccEEEEEE---CCCeEEEEEcCCCCeeE---EecCCCccEEEEE-------
Q 001310          479 -------YSFEGHGAPVYSLCPHAKE--NIHFIFSIS---VDGKIKAWLYDSLGARV---DYDAPGLGCTRMA-------  536 (1103)
Q Consensus       479 -------~~~~~~~~~v~~~~~~~~~--~~~~l~s~~---~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~-------  536 (1103)
                             .++. .-+||.+++.....  .+..+++++   .||++|+..-.-+-...   .+.+ -..+..+.       
T Consensus       341 gsy~~ilet~~-NLgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~  418 (1096)
T KOG1897|consen  341 GSYVVILETFV-NLGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENY  418 (1096)
T ss_pred             Cchhhhhhhcc-cccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccC
Confidence                   2222 34578888765433  334455553   57888876422111100   1111 11111111       


Q ss_pred             ----------------------------EccCCCEEEEEecCCCC-----ceeEEEEeCCCCeeEEEEecccccCCceEE
Q 001310          537 ----------------------------YSANGRRLFSCGTSKEG-----ESFLVEWNESEGAIKRTYQGLQLQHNSVSV  583 (1103)
Q Consensus       537 ----------------------------~s~dg~~l~~~~~~~~~-----~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~  583 (1103)
                                                  |+.+.+.+++....++.     ...|++++-.  .....+...    ..++.
T Consensus       419 d~ylvlsf~~eTrvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~--~~~~~W~~p----~~~ti  492 (1096)
T KOG1897|consen  419 DNYLVLSFISETRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTSNSIRLVSSA--GLRSEWRPP----GKITI  492 (1096)
T ss_pred             CcEEEEEeccceEEEEEccceEEeccccccccCceEEEEccCCceEEEEecccEEEEcch--hhhhcccCC----CceEE
Confidence                                        22222233322221110     0112333221  111111111    23333


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC--C----CEEEEEECCCeEEEEE-cCCCCe
Q 001310          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN--G----TLLAVIANENRIKILE-TPESNS  656 (1103)
Q Consensus       584 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~--g----~~l~~~~~dg~i~iw~-~~~~~~  656 (1103)
                      ...+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|-  +    +++++|..+..+.+.- .++...
T Consensus       493 ~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~  571 (1096)
T KOG1897|consen  493 GVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLIL  571 (1096)
T ss_pred             EEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcce
Confidence            3344455567777777777777776665 222222222346888988874  2    3788887766555443 333322


Q ss_pred             eEeccc----cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccccc--CCccceeeeccC
Q 001310          657 VDAAGV----LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA--RPSECQSLLLPS  730 (1103)
Q Consensus       657 ~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~--~~~~~~~~~~~~  730 (1103)
                      +.....    ....+.-..+                      ..|..+|.++..||.+.-+.++..  .........   
T Consensus       572 ~~~~~l~~~~iPRSIl~~~~----------------------e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~---  626 (1096)
T KOG1897|consen  572 ITHEQLSGEIIPRSILLTTF----------------------EGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVT---  626 (1096)
T ss_pred             eeeeccCCCccchheeeEEe----------------------eccceEEEEEcCCceEEEEEEEcccceEccccccc---
Confidence            222111    1111111111                      234677777777887665554422  211111110   


Q ss_pred             ccccccEEEEEEecCCcEEEEeecCceEEEeecCCC---------cc----------cccccccc-ccCCeeecCCCCCc
Q 001310          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN---------DL----------TLSTEATT-KVPPRLYQPRHGPQ  790 (1103)
Q Consensus       731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~---------~~----------~~~~~~~~-~~~~~~~~~~~~~~  790 (1103)
                       -...++.--.|+..++.-+.+.+|.-..+|.-+..         ..          .+++-+.. ...+.+..+..-+.
T Consensus       627 -lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n~kLv~spls~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqk  705 (1096)
T KOG1897|consen  627 -LGTQPISLRTFSSKSRTAVFALSDRPTVIYSSNGKLVYSPLSLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQK  705 (1096)
T ss_pred             -cCCCCcEEEEEeeCCceEEEEeCCCCEEEEecCCcEEEeccchHHhhhhcccccccCCceEEEecCCceEEEEecchhh
Confidence             12233333344443333333333322222221111         00          01111110 11122222221111


Q ss_pred             eeeccCCCCCCCCCeeEEEEecCCCEEEEEcC---------------CeEEEEEcCCceeeEEecCCC----CCeeEEEE
Q 001310          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---------------GVISLYIVMTFKTILTIMPPS----PTATSLAF  851 (1103)
Q Consensus       791 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d---------------g~i~iwd~~~~~~~~~~~~~~----~~i~~l~~  851 (1103)
                      +....++   -......+++.+....+++.++               ..++++|-++.+.+....-..    -.+.+..|
T Consensus       706 l~irtvp---l~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~  782 (1096)
T KOG1897|consen  706 LHIRTVP---LGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKF  782 (1096)
T ss_pred             cceeeec---CCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeee
Confidence            1111121   3344556666664444444321               137788887777665433211    24455568


Q ss_pred             cCCCCCEEEEEe----------CCCeEEEEEcCCceeEEEecc--CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc
Q 001310          852 NPHDNNVIAIGM----------DDSTILIYNARSSEVISKLEG--HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1103)
Q Consensus       852 s~~d~~~lasg~----------~dg~v~iwd~~~~~~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~  919 (1103)
                      ..|.+.++++|+          ..|.|.++.+..++.+.....  -.+.+.++..- +|++||.  -...|++++...++
T Consensus       783 ~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~  859 (1096)
T KOG1897|consen  783 TDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTER  859 (1096)
T ss_pred             cCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccc
Confidence            874478888886          247888888887444443332  23555555432 5777775  45679999998853


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe---CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEE
Q 001310          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH---ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS  996 (1103)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~---d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~  996 (1103)
                           .++....+..   ++..+...-.|..+++|.   .=++..|+-..|...-.-..-+....+++.+-.+..++. +
T Consensus       860 -----eLr~e~~~~~---~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil~~d~ylg-a  930 (1096)
T KOG1897|consen  860 -----ELRIECNISN---PIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEILDDDTYLG-A  930 (1096)
T ss_pred             -----eehhhhcccC---CeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEecCceEEe-e
Confidence                 3444444443   788999999999999972   235666777776666554556788899999887777666 4


Q ss_pred             ecCCcEEEEeCCCce----eEEeecccc-c-cCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310          997 FVDGTLSIHEASNLE----VQCRILSTA-Y-LRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus       997 ~~dg~v~vWd~~~~~----~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
                      ..+|.+.+-..++..    ......... | ++.-+       .-..|+.-|.+..-+..|..+ .+..|.-+|.|.+--
T Consensus       931 e~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGelv-------n~f~hg~lv~~~~~s~~~~~~-~vlfgTv~GsIG~i~ 1002 (1096)
T KOG1897|consen  931 ENSGNLFTVRKDSDATTDEERQILEEVGKFHLGELV-------NKFRHGSLVMQLGDSMIPLEP-KVLFGTVNGSIGIIV 1002 (1096)
T ss_pred             cccccEEEEEecCCCCchhhhhcccceeeEEeccce-------eeeeecceEeeccccccCCCC-cEEEEEccceEEEEE
Confidence            567887776554321    111111000 1 11110       002244444443334455533 488889999987653

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.84  E-value=3.9e-08  Score=100.72  Aligned_cols=165  Identities=21%  Similarity=0.168  Sum_probs=115.0

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      .++.+.++|.++ ++|++..+....++++......    .+.++..         ..   ...-+++.|-.+......+.
T Consensus        64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~~----~kl~~~~---------~v---~~~~~ai~~~~~~~sv~v~d  126 (390)
T KOG3914|consen   64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPKG----AKLLDVS---------CV---PKRPTAISFIREDTSVLVAD  126 (390)
T ss_pred             cccccccCCCce-EEEEEeCCCceEEEEEecCCCc----ceeeeEe---------ec---ccCcceeeeeeccceEEEEe
Confidence            556677788887 7888888777767776544320    1111110         01   12334455555555555553


Q ss_pred             ---CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEE
Q 001310          416 ---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  491 (1103)
Q Consensus       416 ---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~  491 (1103)
                         ....+.+|+...+.+.    .+-||-..++.++|+||++  .++++..|..|+|-.......+..+ -||...|..+
T Consensus       127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i  200 (390)
T KOG3914|consen  127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI  200 (390)
T ss_pred             ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence               4445666666654332    3569999999999999998  8999999999999887766666555 5799999999


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  526 (1103)
                      +..+   +..|+++|.|+++++||+.+++....+.
T Consensus       201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence            9853   3579999999999999999988775443

>KOG3914 consensus WD repeat protein WDR4 [Function unknown]

Probab=98.80  E-value=5.2e-08  Score=99.79  Aligned_cols=158  Identities=9%  Similarity=0.087  Sum_probs=113.8

Q ss_pred             EEEEcCCCCCEEEEEeCCCeEEEEEcCCce----eEEEeccCCCCEEEEEEccCCCEEE---EEeCCCeEEEEEcCCCce
Q 001310          848 SLAFNPHDNNVIAIGMDDSTILIYNARSSE----VISKLEGHSKRVTGLVFSDALNILV---SSGGDAQIFVWDVDGWGI  920 (1103)
Q Consensus       848 ~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----~~~~l~~h~~~V~~l~~s~dg~~l~---s~s~dg~I~iwd~~~~~~  920 (1103)
                      .+..++ ++++||++..+....++++....    ++..... ...-+++.|..+.....   .++....+.+|+...+. 
T Consensus        67 ~~~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v-~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~-  143 (390)
T KOG3914|consen   67 LVLTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV-PKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGR-  143 (390)
T ss_pred             ccccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeec-ccCcceeeeeeccceEEEEeecCCceeeeeecccccC-
Confidence            345666 88899998888887777766432    2222221 12223444444433333   34555667777766533 


Q ss_pred             eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC
Q 001310          921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD  999 (1103)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d  999 (1103)
                           ....-||..   .++.++||||+++|+++ .|..|++-....--.+..+..||..-|..++.-+ +..|+++|.|
T Consensus       144 -----~~~~lGhvS---ml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~-~~~LlS~sGD  214 (390)
T KOG3914|consen  144 -----CEPILGHVS---MLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTD-NYLLLSGSGD  214 (390)
T ss_pred             -----cchhhhhhh---hhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeecc-CceeeecCCC
Confidence                 233456665   79999999999999998 8899999999888888888899999999999855 4569999999


Q ss_pred             CcEEEEeCCCceeEEeec
Q 001310         1000 GTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus      1000 g~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ++|++||+.+|+.+..+.
T Consensus       215 ~tlr~Wd~~sgk~L~t~d  232 (390)
T KOG3914|consen  215 KTLRLWDITSGKLLDTCD  232 (390)
T ss_pred             CcEEEEecccCCcccccc
Confidence            999999999999885554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.78  E-value=8.1e-06  Score=83.68  Aligned_cols=205  Identities=15%  Similarity=0.114  Sum_probs=142.4

Q ss_pred             eEEEEec-CCCEEEEEc-CC-eEEEEEcCCceeeEEecCCCCCe--eEEEEcCCCCCEEEEEe-----CCCeEEEEEcC-
Q 001310          806 PCFALSK-NDAYLFSAS-GG-VISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGM-----DDSTILIYNAR-  874 (1103)
Q Consensus       806 ~~l~~s~-d~~~l~~~~-dg-~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~-----~dg~v~iwd~~-  874 (1103)
                      -.++.+| +...++.+- -| ...+||..+++....+....+.-  -.-+||+ ||++|++.-     ..|.|-|||.. 
T Consensus         8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~~~   86 (305)
T PF07433_consen    8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDAAR   86 (305)
T ss_pred             cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEECcC
Confidence            3677888 455556665 34 48899999999998887655432  3578999 899998854     34899999999 


Q ss_pred             CceeEEEeccCCCCEEEEEEccCCCEEEEEeC------------------CCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310          875 SSEVISKLEGHSKRVTGLVFSDALNILVSSGG------------------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1103)
Q Consensus       875 ~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~------------------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1103)
                      +.+.+.++..|.-.-..+.+.|||+.|+.+-.                  +-.+..-|..+|++.....+... -+.   
T Consensus        87 ~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~-~~~---  162 (305)
T PF07433_consen   87 GYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPD-LHQ---  162 (305)
T ss_pred             CcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcc-ccc---
Confidence            66788888887766677899999988877521                  12355566777775553333111 122   


Q ss_pred             CCceEEEEcCCCCEEEEE-eCC-------eEEEEECCCceEEEEeeC------CCCcCeEEEEEccCCCEEEEEe-cCCc
Q 001310          937 PSETHIQFHKDQTRFLLV-HET-------HLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDGT 1001 (1103)
Q Consensus       937 ~~v~~l~fs~dg~~l~~~-~d~-------~v~iwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~dg~ 1001 (1103)
                      .++..+++.++|..++.. ..+       -|.+++-...  +..+..      .-...+-+|+++.++.++++.+ .-+.
T Consensus       163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~--~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~  240 (305)
T PF07433_consen  163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGA--LRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR  240 (305)
T ss_pred             cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCc--ceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence            369999999999988764 111       2555554432  221111      1257899999999998876554 6789


Q ss_pred             EEEEeCCCceeEEeec
Q 001310         1002 LSIHEASNLEVQCRIL 1017 (1103)
Q Consensus      1002 v~vWd~~~~~~~~~~~ 1017 (1103)
                      +.+||..+++++....
T Consensus       241 ~~~~d~~tg~~~~~~~  256 (305)
T PF07433_consen  241 VAVWDAATGRLLGSVP  256 (305)
T ss_pred             EEEEECCCCCEeeccc
Confidence            9999999999987666

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.77  E-value=2.7e-06  Score=94.72  Aligned_cols=342  Identities=14%  Similarity=0.111  Sum_probs=190.5

Q ss_pred             EEEEEECCCCCEEEEEe----CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          399 VNRVVWSPDGSLLGVAY----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       399 V~~~~~spdg~~las~~----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      -+-..|+|...++|+++    ..|+|.||- ++|+.-+.. +..-   .+++++|+|..-  +|+.|-.-|.+.+|...+
T Consensus        18 sti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~~   90 (1416)
T KOG3617|consen   18 STISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTNT   90 (1416)
T ss_pred             ccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecCC
Confidence            34467999999999885    357888884 344422211 1222   356799999766  788888899999999877


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC--C--Cc--cEEEEEEccCCCEEE---
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--P--GL--GCTRMAYSANGRRLF---  545 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~--~~--~i~~~~~s~dg~~l~---  545 (1103)
                      .+.-.....|..+|..+.|+  ++|..++++..-|.+.+|.++-.........  |  +.  ...+...++++.-++   
T Consensus        91 ~e~htv~~th~a~i~~l~wS--~~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~la  168 (1416)
T KOG3617|consen   91 TETHTVVETHPAPIQGLDWS--HDGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLA  168 (1416)
T ss_pred             ceeeeeccCCCCCceeEEec--CCCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhhh
Confidence            77666667899999999995  4778999999999999998875433332211  1  11  234455566643221   


Q ss_pred             --EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310          546 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1103)
Q Consensus       546 --~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1103)
                        +.+.+..+--...-|...+..  +...           -.-.|+|..++.++.+|+|+-.|- .|+..........  
T Consensus       169 KaaVtgDe~alD~~fnwk~~~a~--rs~~-----------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~--  232 (1416)
T KOG3617|consen  169 KAAVTGDESALDEPFNWKESLAE--RSDE-----------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE--  232 (1416)
T ss_pred             hhhccCchhhhcccccCccchhh--cccc-----------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch--
Confidence              111111100001112211110  0000           012478888899999999988774 4555555443321  


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1103)
                        ..+-|.+...-+++...+-.+.++-.......       .....+.++-.     .|.            ..|. ++.
T Consensus       233 --vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~-------ee~~~vk~sgk-----~Gg------------rqGg-iA~  285 (1416)
T KOG3617|consen  233 --VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTS-------EERCAVKVSGK-----LGG------------RQGG-IAC  285 (1416)
T ss_pred             --HHHHHhcccceEEEEeeeceeeEEEecCCCch-------HHhhhhhhccc-----cCC------------ccCc-ccc
Confidence              33556665555555555544444433321100       00000011000     000            0111 222


Q ss_pred             eccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeee
Q 001310          704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1103)
Q Consensus       704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  783 (1103)
                      +...|.++-        ....     .......+.+++++..+..+.++...|.+.+|.-....+.      ...++.+|
T Consensus       286 sEssGvLr~--------~eKy-----g~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~------g~p~~d~w  346 (1416)
T KOG3617|consen  286 SESSGVLRK--------SEKY-----GLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQ------GDPTIDVW  346 (1416)
T ss_pred             ccccccccC--------Ccch-----hhhcCCceEEEEEeccceEEEecccCCcEEEeeecCcccc------CCCCcceE
Confidence            222231110        0000     0124567899999999999999999999999974333221      11235566


Q ss_pred             cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc
Q 001310          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS  821 (1103)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~  821 (1103)
                      ...+..          ...+.|+.+.|.|-...+++-+
T Consensus       347 ~l~~~~----------e~~g~I~~i~Wg~~k~~~avn~  374 (1416)
T KOG3617|consen  347 TLNGKR----------ESLGKISLIRWGPIKSTAAVNT  374 (1416)
T ss_pred             EecCch----------hhccceEEEEeccccchhhhhh
Confidence            655443          2456788888888555544433

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.75  E-value=8.1e-06  Score=80.82  Aligned_cols=250  Identities=11%  Similarity=0.137  Sum_probs=136.4

Q ss_pred             eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC
Q 001310          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1103)
Q Consensus       338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d  417 (1103)
                      |.++.+.||+ +||.- .|..|.|=.....-.....++              .+.+...-.-+.++||||+.+||.+...
T Consensus         1 W~~~~~~~Gk-~lAi~-qd~~iEiRsa~Ddf~si~~kc--------------qVpkD~~PQWRkl~WSpD~tlLa~a~S~   64 (282)
T PF15492_consen    1 WHLALSSDGK-LLAIL-QDQCIEIRSAKDDFSSIIGKC--------------QVPKDPNPQWRKLAWSPDCTLLAYAEST   64 (282)
T ss_pred             CceeecCCCc-EEEEE-eccEEEEEeccCCchheeEEE--------------ecCCCCCchheEEEECCCCcEEEEEcCC
Confidence            4578899998 56654 456676666544321111111              1123334456779999999999999999


Q ss_pred             CeEEEEEecCCCccc--cceEec-cccccEEEEEEecCC---C-ceEEEEEcCCCceEEEeCCCC-----ceeEEeec--
Q 001310          418 HIVQLYAYHGGSDAR--QQLEID-AHVGNVNDLAFSAPC---K-QISVITCGDDKTIKVWDAVTG-----SRTYSFEG--  483 (1103)
Q Consensus       418 ~~i~iwd~~~~~~~~--~~~~l~-~h~~~v~~~~~s~d~---~-~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~--  483 (1103)
                      |+|+++|+.+.+...  +..... .-...|..+.|.+-.   + ...|+.-..+|.++=+-+..+     +..+++..  
T Consensus        65 G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~  144 (282)
T PF15492_consen   65 GTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSS  144 (282)
T ss_pred             CeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecc
Confidence            999999998754321  100111 123467777775532   1 013555666777776665322     23344432  


Q ss_pred             -CCCceEEEEeeecCCccEEEEEECC-CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC----ceeE
Q 001310          484 -HGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG----ESFL  557 (1103)
Q Consensus       484 -~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~----~~~i  557 (1103)
                       +...|.++.+++..  ++|+.|+.. ..-..+           ......+++-.+-.+..+........+.    ..+.
T Consensus       145 ~yp~Gi~~~vy~p~h--~LLlVgG~~~~~~~~s-----------~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~  211 (282)
T PF15492_consen  145 HYPHGINSAVYHPKH--RLLLVGGCEQNQDGMS-----------KASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRR  211 (282)
T ss_pred             cCCCceeEEEEcCCC--CEEEEeccCCCCCccc-----------cccccCceEEEEcCCCCcEEEccccCcccccccccc
Confidence             46789999997654  455555432 210000           0111122222221121111111100000    0012


Q ss_pred             EEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1103)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  619 (1103)
                      .+|.+-+.+.   +.........|..+..+|||..|++...+|.|.+|++.+-+.......+
T Consensus       212 ~~~~~~~~~~---fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~~~  270 (282)
T PF15492_consen  212 GLLRIPSFKF---FSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWKQD  270 (282)
T ss_pred             ceeeccceee---eeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence            2333332222   1111112478999999999999999999999999999987776665543

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=98.75  E-value=1.4e-05  Score=90.52  Aligned_cols=153  Identities=20%  Similarity=0.117  Sum_probs=93.1

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCC--ceE-----EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA--PVY-----SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  529 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~--~v~-----~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  529 (1103)
                      .++.++.++.+.-+|.++|+.+........  ...     .+.-.+.-.+..++.++.+|.+..+|.++++.........
T Consensus        71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~  150 (394)
T PRK11138         71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG  150 (394)
T ss_pred             EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence            477777888999999999998876543220  000     0000011123467788899999999999999888766544


Q ss_pred             ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccC--CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  607 (1103)
                      ....+..+. ++ .++.+..    ++.++.+|..+|+.+-.+.......  .....-..  .+..++.++.+|.+..+|.
T Consensus       151 ~~~ssP~v~-~~-~v~v~~~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~  222 (394)
T PRK11138        151 EALSRPVVS-DG-LVLVHTS----NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM  222 (394)
T ss_pred             ceecCCEEE-CC-EEEEECC----CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence            322222222 34 4444432    5679999999999887765432000  00001111  1345777888899999999


Q ss_pred             CCCeeEEEEc
Q 001310          608 NKVQLLTTID  617 (1103)
Q Consensus       608 ~~~~~~~~~~  617 (1103)
                      .+|+.+....
T Consensus       223 ~~G~~~W~~~  232 (394)
T PRK11138        223 EQGQLIWQQR  232 (394)
T ss_pred             cCChhhheec
Confidence            9888765543

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.74  E-value=2.7e-06  Score=82.23  Aligned_cols=191  Identities=9%  Similarity=-0.038  Sum_probs=129.5

Q ss_pred             EEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-ee-EE-EeccCCCCEEEE
Q 001310          816 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EV-IS-KLEGHSKRVTGL  892 (1103)
Q Consensus       816 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~-~~-~l~~h~~~V~~l  892 (1103)
                      .+++..|.+++++++.-+..........-.+.++++++ |++++++.+....|..|.+... +. +. ....-++.-.+.
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~  209 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYN  209 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceee
Confidence            33444477788887764433333322223488999999 9999999999999999999863 22 22 233345566788


Q ss_pred             EEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCE--EEEE-eCCeEEEEECCCceE
Q 001310          893 VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR--FLLV-HETHLAIYEAEELTC  969 (1103)
Q Consensus       893 ~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~--l~~~-~d~~v~iwd~~~~~~  969 (1103)
                      .|+.....+|++..||++.|||+..-.......   ......+.+.++.+.||+.|.+  |..+ .-+.+.+.|++++..
T Consensus       210 S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~---sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~  286 (344)
T KOG4532|consen  210 SFSENDLQFAVVFQDGTCAIYDVRNMATPMAEI---SSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN  286 (344)
T ss_pred             eeccCcceEEEEecCCcEEEEEecccccchhhh---cccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce
Confidence            999999999999999999999998733211111   1111223468999999987643  3344 557899999999876


Q ss_pred             EEEeeCC------C-CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310          970 LKQWFPI------S-SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       970 ~~~~~~~------h-~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      ...+...      | ...|+.-.|+.++.-..+.+++ .+.-|++.+..
T Consensus       287 ~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  287 HQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRS  334 (344)
T ss_pred             eeEEecCccccccccccccccccccCCCcccccccch-hhheeeccccc
Confidence            6553322      3 2348888999988877777655 35667766544

>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]

Probab=98.73  E-value=9e-08  Score=104.61  Aligned_cols=295  Identities=13%  Similarity=0.150  Sum_probs=188.9

Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccc--cEEEEEEecCCCce-EEEEEcCCCceEEEeC
Q 001310          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVG--NVNDLAFSAPCKQI-SVITCGDDKTIKVWDA  472 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~--~v~~~~~s~d~~~~-~l~s~~~d~~i~iwd~  472 (1103)
                      .+++.++.++|.|+-+|.++.-| +.+-|+...-  .+. .+-.|..  .|-.+.|+|..... .+++.+ ...-.+|++
T Consensus        24 ~~~~~a~si~p~grdi~lAsr~g-l~i~dld~p~--~pp-r~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnl   98 (1081)
T KOG0309|consen   24 DGGFNAVSINPSGRDIVLASRQG-LYIIDLDDPF--TPP-RWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNL   98 (1081)
T ss_pred             cCcccceeeccccchhhhhhhcC-eEEEeccCCC--CCc-eeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhh
Confidence            46788999999999999998888 6666776532  111 1222332  46778888875543 445444 445568998


Q ss_pred             CCC---ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccC-CCEEEEE
Q 001310          473 VTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSAN-GRRLFSC  547 (1103)
Q Consensus       473 ~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~d-g~~l~~~  547 (1103)
                      ...   ..-..+.+|...|+.+-|++. ....+++++.|-.++.||+++..... ....-......+.|+-. +..+++.
T Consensus        99 A~ss~~aIef~lhghsraitd~n~~~q-~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlass  177 (1081)
T KOG0309|consen   99 AKSSSNAIEFVLHGHSRAITDINFNPQ-HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASS  177 (1081)
T ss_pred             hcCCccceEEEEecCccceeccccCCC-CCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhc
Confidence            643   334567899999999999875 34689999999999999998866544 33333345566788874 4445544


Q ss_pred             ecCCCCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310          548 GTSKEGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1103)
                      .     ...|.+||.+.| ..+..+++|.   ..|+.+.|..- ...+.+.+.||+|++||............... .++
T Consensus       178 h-----g~~i~vwd~r~gs~pl~s~K~~v---s~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~-~pi  248 (1081)
T KOG0309|consen  178 H-----GNDIFVWDLRKGSTPLCSLKGHV---SSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTN-FPI  248 (1081)
T ss_pred             c-----CCceEEEeccCCCcceEEecccc---eeeehHHHhhhhhhhhcccCCCCceeeecccccccccceecccc-Ccc
Confidence            3     234999999865 5667777766   78888888653 34578889999999999876433222221111 345


Q ss_pred             ceEEEecCCCEEEE--EECCCeEEE---------EEcCC-CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCC
Q 001310          626 PRICFNKNGTLLAV--IANENRIKI---------LETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~--~~~dg~i~i---------w~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1103)
                      ..-.+.|-|.-.++  .-.+..+.+         |+..+ .+++..+.+|.+.|....|-......            ++
T Consensus       249 w~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~------------~d  316 (1081)
T KOG0309|consen  249 WRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECD------------GD  316 (1081)
T ss_pred             eeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhccccc------------CC
Confidence            55566663332221  111223333         33332 36778888888887766665332211            11


Q ss_pred             CCCCCccceeeccccccccccccc
Q 001310          694 PKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                      .....-.|++-+.|.++|+|.+..
T Consensus       317 ~d~rdfQLVTWSkD~~lrlWpI~~  340 (1081)
T KOG0309|consen  317 YDSRDFQLVTWSKDQTLRLWPIDS  340 (1081)
T ss_pred             CCccceeEEEeecCCceEeeeccH
Confidence            112234588999999999998763

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.72  E-value=4e-06  Score=87.93  Aligned_cols=223  Identities=13%  Similarity=0.132  Sum_probs=138.2

Q ss_pred             CCeEEEEEcCCceeeEEecCC--CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCC
Q 001310          822 GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN  899 (1103)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~  899 (1103)
                      +|.|..||..+|+.+......  .....+.++.  ++..+++++.++.++.||..+|+.+..+.. .+.+.... ..++.
T Consensus         2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~--~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~   77 (238)
T PF13360_consen    2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP--DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG   77 (238)
T ss_dssp             TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE--ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred             CCEEEEEECCCCCEEEEEECCCCCCCccceEEE--eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence            578999999999998887542  1222222332  345677778999999999999998877764 22211111 22355


Q ss_pred             EEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCC
Q 001310          900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISS  978 (1103)
Q Consensus       900 ~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~  978 (1103)
                      .++.++.++.|..+|..+|+..-...........    .........++..++++ .++.|..+|..+|+.+........
T Consensus        78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~  153 (238)
T PF13360_consen   78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG----VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEP  153 (238)
T ss_dssp             EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS----TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT
T ss_pred             ccccccceeeeEecccCCcceeeeeccccccccc----cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCC
Confidence            6666778889999999999875542111111100    11222333337777775 589999999999999887544221


Q ss_pred             c---C------eEEEEEccCCCEEEEEecCCc-EEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEE
Q 001310          979 V---P------ISQATFSCDCRMVFTSFVDGT-LSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIA 1048 (1103)
Q Consensus       979 ~---~------v~~l~fs~dg~~l~t~~~dg~-v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 1048 (1103)
                      .   .      +..-....++ .++.++.++. +.+ |+.+++.+.+.. ..                    ....   .
T Consensus       154 ~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~--------------------~~~~---~  207 (238)
T PF13360_consen  154 RGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-IS--------------------GIYS---L  207 (238)
T ss_dssp             -SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS---------------------ECE---C
T ss_pred             CCCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CC--------------------CccC---C
Confidence            1   1      1222223345 6666777775 555 999999653211 00                    0111   1


Q ss_pred             ECCCCCcEEEEEecCCcEEEEccCCCCCCCc
Q 001310         1049 AHPLKPTQFAVGLTNGEVYVIEPNEPGDTWA 1079 (1103)
Q Consensus      1049 ~~p~~~~~l~~~~~dg~v~vw~~~~~~~~w~ 1079 (1103)
                      ..+. +..|+.++.+|.|..||+...+..|.
T Consensus       208 ~~~~-~~~l~~~~~~~~l~~~d~~tG~~~W~  237 (238)
T PF13360_consen  208 PSVD-GGTLYVTSSDGRLYALDLKTGKVVWQ  237 (238)
T ss_dssp             EECC-CTEEEEEETTTEEEEEETTTTEEEEE
T ss_pred             ceee-CCEEEEEeCCCEEEEEECCCCCEEeE
Confidence            2233 67777777999999999988877774

...

>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]

Probab=98.71  E-value=1.8e-06  Score=83.47  Aligned_cols=148  Identities=11%  Similarity=-0.035  Sum_probs=106.2

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      +.++++|+|++++++.+....|..|.+...............++.=.+..|+....  .+|++..||++.|||++.-...
T Consensus       161 ~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~--~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  161 QNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDL--QFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             eeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcc--eEEEEecCCcEEEEEecccccc
Confidence            78999999999999999999999999976543322223334444556888998877  7999999999999999865433


Q ss_pred             E-----EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC--------ccEEEEEEccCCCEEE
Q 001310          479 Y-----SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG--------LGCTRMAYSANGRRLF  545 (1103)
Q Consensus       479 ~-----~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~--------~~i~~~~~s~dg~~l~  545 (1103)
                      .     +-..|.+.++.+.|++.+--.+|+..-.-+.+++.|+++......+....        ..|..-+|+.++..+.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence            2     22358899999999865555677777777889999999877554332222        1355666666666555


Q ss_pred             EEe
Q 001310          546 SCG  548 (1103)
Q Consensus       546 ~~~  548 (1103)
                      +..
T Consensus       319 v~~  321 (344)
T KOG4532|consen  319 VKN  321 (344)
T ss_pred             ccc
Confidence            544

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.71  E-value=6.1e-06  Score=86.53  Aligned_cols=224  Identities=14%  Similarity=0.107  Sum_probs=132.8

Q ss_pred             eecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEE
Q 001310          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI  861 (1103)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~las  861 (1103)
                      .+|+.+|+.+....+..  ......+..+..++..++...++.+..||..+|+.+.++............   .+..+++
T Consensus         7 ~~d~~tG~~~W~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~---~~~~v~v   81 (238)
T PF13360_consen    7 ALDPRTGKELWSYDLGP--GIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAPVV---DGGRVYV   81 (238)
T ss_dssp             EEETTTTEEEEEEECSS--SCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGEEE---ETTEEEE
T ss_pred             EEECCCCCEEEEEECCC--CCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeeccccccceeee---ccccccc
Confidence            34445555555544321  112222223334444444446899999999999999887753321122222   2346666


Q ss_pred             EeCCCeEEEEEcCCceeEEEe-ccCC---CCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc--C
Q 001310          862 GMDDSTILIYNARSSEVISKL-EGHS---KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT--L  935 (1103)
Q Consensus       862 g~~dg~v~iwd~~~~~~~~~l-~~h~---~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~--~  935 (1103)
                      ++.++.++.+|..+|+.+... ....   ..........++..++.+..++.|..+|.++|+..-........+...  .
T Consensus        82 ~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  161 (238)
T PF13360_consen   82 GTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISS  161 (238)
T ss_dssp             EETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEE
T ss_pred             ccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceee
Confidence            778889999999999998874 3221   112233333447888888889999999999998765444433222110  0


Q ss_pred             CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEE
Q 001310          936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus       936 ~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~ 1014 (1103)
                      ...+..-....++..+++..++.+.-+|+.+++.+.. ...  ..+.. ....++..|++++.++.|..||+.+|+.+-
T Consensus       162 ~~~~~~~~~~~~~~v~~~~~~g~~~~~d~~tg~~~w~-~~~--~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W  236 (238)
T PF13360_consen  162 FSDINGSPVISDGRVYVSSGDGRVVAVDLATGEKLWS-KPI--SGIYS-LPSVDGGTLYVTSSDGRLYALDLKTGKVVW  236 (238)
T ss_dssp             ETTEEEEEECCTTEEEEECCTSSEEEEETTTTEEEEE-ECS--S-ECE-CEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred             ecccccceEEECCEEEEEcCCCeEEEEECCCCCEEEE-ecC--CCccC-CceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence            0012233333455444445677544449999997643 221  22222 245777888888899999999999999764

...

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.71  E-value=3e-07  Score=90.32  Aligned_cols=76  Identities=21%  Similarity=0.291  Sum_probs=58.8

Q ss_pred             CCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCce---eeEEecCCC-----CCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310          800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK---TILTIMPPS-----PTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1103)
Q Consensus       800 ~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~---~~~~~~~~~-----~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1103)
                      .|...+.++.|..|.+.++++.+=.|-+|++.--.   .+..+++|.     .-|++..|+|.....+...+..|.|++-
T Consensus       170 aH~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~  249 (460)
T COG5170         170 AHPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLN  249 (460)
T ss_pred             cceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEeh
Confidence            58889999999999999999999999999986322   223334443     2568888998667777788888999998


Q ss_pred             EcCC
Q 001310          872 NARS  875 (1103)
Q Consensus       872 d~~~  875 (1103)
                      |++.
T Consensus       250 DlRq  253 (460)
T COG5170         250 DLRQ  253 (460)
T ss_pred             hhhh
Confidence            8874

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.68  E-value=4e-05  Score=80.46  Aligned_cols=221  Identities=13%  Similarity=0.134  Sum_probs=139.8

Q ss_pred             EEEEec-CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe-cCCCE
Q 001310          739 RLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAY  816 (1103)
Q Consensus       739 ~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~d~~~  816 (1103)
                      +++|.+ ++..+++-...+.|..|+....                      . .....+      .....+++. +++++
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~----------------------~-~~~~~~------~~~~G~~~~~~~g~l   54 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG----------------------E-VEVIDL------PGPNGMAFDRPDGRL   54 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTT----------------------E-EEEEES------SSEEEEEEECTTSEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCC----------------------e-EEEEec------CCCceEEEEccCCEE
Confidence            567887 5555555455677777664432                      2 111111      126677777 67655


Q ss_pred             EEEEcCCeEEEEEcCCceeeEEecC-----CCCCeeEEEEcCCCCCEEEEEeCC--------CeEEEEEcCCceeEEEec
Q 001310          817 LFSASGGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAIGMDD--------STILIYNARSSEVISKLE  883 (1103)
Q Consensus       817 l~~~~dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~lasg~~d--------g~v~iwd~~~~~~~~~l~  883 (1103)
                      +++. .+.+.++|..+++.......     .....+.+++.| +|++.++....        |.|..++.. ++......
T Consensus        55 ~v~~-~~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~-~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~  131 (246)
T PF08450_consen   55 YVAD-SGGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDP-DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD  131 (246)
T ss_dssp             EEEE-TTCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-T-TS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE
T ss_pred             EEEE-cCceEEEecCCCcEEEEeeccCCCcccCCCceEEEcC-CCCEEEEecCCCccccccccceEEECCC-CeEEEEec
Confidence            5554 45556669988855433322     345678999999 88877765543        567777777 55433333


Q ss_pred             cCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEcCCCc--eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeE
Q 001310          884 GHSKRVTGLVFSDALNILV-SSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL  959 (1103)
Q Consensus       884 ~h~~~V~~l~~s~dg~~l~-s~s~dg~I~iwd~~~~~--~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v  959 (1103)
                       .-...+.|+|+||++.|. +-+..+.|..++++...  ......+.......   +..-.+++..+|++.++. ..+.|
T Consensus       132 -~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~---g~pDG~~vD~~G~l~va~~~~~~I  207 (246)
T PF08450_consen  132 -GLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGP---GYPDGLAVDSDGNLWVADWGGGRI  207 (246)
T ss_dssp             -EESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSS---CEEEEEEEBTTS-EEEEEETTTEE
T ss_pred             -CcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCC---cCCCcceEcCCCCEEEEEcCCCEE
Confidence             345678999999998765 55678889999986432  33333333222221   136789999999988875 78899


Q ss_pred             EEEECCCceEEEEeeCCCCcCeEEEEEc-cCCCEEEEEe
Q 001310          960 AIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSF  997 (1103)
Q Consensus       960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~  997 (1103)
                      .+++.+ |+.+..+..+ ...+++++|. +|.+.|++.+
T Consensus       208 ~~~~p~-G~~~~~i~~p-~~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  208 VVFDPD-GKLLREIELP-VPRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             EEEETT-SCEEEEEE-S-SSSEEEEEEESTTSSEEEEEE
T ss_pred             EEECCC-ccEEEEEcCC-CCCEEEEEEECCCCCEEEEEe
Confidence            999988 8888775554 4589999995 6766665543

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.68  E-value=2e-05  Score=81.70  Aligned_cols=208  Identities=16%  Similarity=0.180  Sum_probs=136.0

Q ss_pred             CeeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC-CceeE
Q 001310          804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEVI  879 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~  879 (1103)
                      ....+++|.||+++.+..   ..+|.|.|+..++.+.++..+..   .+.+ |...+-+.+-+.||.+.-..+. .|+..
T Consensus        96 ~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC---~~iy-P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~  171 (342)
T PF06433_consen   96 YKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGC---WLIY-PSGNRGFSMLCGDGSLLTVTLDADGKEA  171 (342)
T ss_dssp             -GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSE---EEEE-EEETTEEEEEETTSCEEEEEETSTSSEE
T ss_pred             cccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCE---EEEE-ecCCCceEEEecCCceEEEEECCCCCEe
Confidence            344578999999999886   47799999999999988864331   1222 2133467788889999999988 45543


Q ss_pred             EE----eccCCCCEE-EEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcc---c-CCCCceEEEEcCCCCE
Q 001310          880 SK----LEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM---T-LAPSETHIQFHKDQTR  950 (1103)
Q Consensus       880 ~~----l~~h~~~V~-~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~---~-~~~~v~~l~fs~dg~~  950 (1103)
                      .+    |..-.+++. .-+++..+..++..+..|.|+--|+..................   . ..+.-.-+++++..+.
T Consensus       172 ~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~r  251 (342)
T PF06433_consen  172 QKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGR  251 (342)
T ss_dssp             EEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTE
T ss_pred             EeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCe
Confidence            22    222222222 3345556666766889999999999987755544444332110   0 0134567899987766


Q ss_pred             EEE----EeCC-------eEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEE-ecCCcEEEEeCCCceeEEeec
Q 001310          951 FLL----VHET-------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTS-FVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       951 l~~----~~d~-------~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~-~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      |.+    +.++       .|.++|+.+++.+..+...  .++.+|..|.|.+ +|++. ..++.+.+||..+|+++.++.
T Consensus       252 lyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~--~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~  329 (342)
T PF06433_consen  252 LYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLE--HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE  329 (342)
T ss_dssp             EEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEE--EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred             EEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCC--CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence            665    2222       4999999999999886643  4688999999887 45444 457999999999999998887

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.67  E-value=3.7e-07  Score=87.69  Aligned_cols=209  Identities=14%  Similarity=0.205  Sum_probs=129.7

Q ss_pred             ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1103)
Q Consensus       337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~  416 (1103)
                      |+.+.|+-+-  .|+++..++.+......++.+..     .|+-.....++..  +..|+++-.+-+.+--+..+++++.
T Consensus        39 ~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~~~~~--~a~~sep~p~~~~s~~~t~V~~~~~  109 (319)
T KOG4714|consen   39 LSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGIDPFKV--LAKNSEIDPNDACTMTDNRVCIGYA  109 (319)
T ss_pred             EEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcCceee--eeccCCCCCcccccccCCceEecCC
Confidence            6677777664  57888888888877766655442     2333223333332  3345555445555556888999999


Q ss_pred             CCeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEc-----CCCceEEEeCCCCceeEEeecCCCceEE
Q 001310          417 KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1103)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~  490 (1103)
                      ||.+.+.+.+.-  ++....+. .|.+. .+.+....+.  .+.+++     .-+..+.|+++..+.+..-......|.+
T Consensus       110 dg~~~v~s~~~~--~~~~~~i~~~~~~~-as~~~~~~~~--~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~  184 (319)
T KOG4714|consen  110 DGSLAVFSTDKD--LALMSRIPSIHSGS-ASRKICRHGN--SILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTA  184 (319)
T ss_pred             CceEEEEechHH--Hhhhhhcccccccc-cccceeeccc--EEecCCcceEeeccceeeecccccccccccccccccchh
Confidence            999999998762  22111111 12221 1222333344  233322     1234556665544333222222344888


Q ss_pred             EEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEcc-CCCEEEEEecCCCCceeEEEEeCCC
Q 001310          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNESE  564 (1103)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1103)
                      ++-+|... +.+++|+.||.+-+||.++..... .+..|..++..+.|+| ++..|++++.    +|.+..||..+
T Consensus       185 l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~  255 (319)
T KOG4714|consen  185 LCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST  255 (319)
T ss_pred             hhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence            99887644 688999999999999999875444 5677888999999999 6678888876    55599999764

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.65  E-value=2.4e-05  Score=82.11  Aligned_cols=221  Identities=18%  Similarity=0.154  Sum_probs=141.3

Q ss_pred             EEEECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEe-cCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          401 RVVWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS-APCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       401 ~~~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s-~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      +++|.+ ++.++.+--..+.|..|+..++....    +...  ....+++. +++.   ++.+..+ .+.++|..+++..
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~----~~~~--~~~G~~~~~~~g~---l~v~~~~-~~~~~d~~~g~~~   73 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV----IDLP--GPNGMAFDRPDGR---LYVADSG-GIAVVDPDTGKVT   73 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE----EESS--SEEEEEEECTTSE---EEEEETT-CEEEEETTTTEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE----EecC--CCceEEEEccCCE---EEEEEcC-ceEEEecCCCcEE
Confidence            467888 67777776678899999998875321    1111  16677777 6765   4545544 4566699998665


Q ss_pred             EEeec-----CCCceEEEEeeecCCccEEEEEECC--------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEE
Q 001310          479 YSFEG-----HGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       479 ~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1103)
                      .....     .....+.+++.  ++|.+.++....        |.|..++.+ ++ .......-...+.++|+||++.|+
T Consensus        74 ~~~~~~~~~~~~~~~ND~~vd--~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~-~~~~~~~~~~pNGi~~s~dg~~ly  149 (246)
T PF08450_consen   74 VLADLPDGGVPFNRPNDVAVD--PDGNLYVTDSGGGGASGIDPGSVYRIDPD-GK-VTVVADGLGFPNGIAFSPDGKTLY  149 (246)
T ss_dssp             EEEEEETTCSCTEEEEEEEE---TTS-EEEEEECCBCTTCGGSEEEEEEETT-SE-EEEEEEEESSEEEEEEETTSSEEE
T ss_pred             EEeeccCCCcccCCCceEEEc--CCCCEEEEecCCCccccccccceEEECCC-Ce-EEEEecCcccccceEECCcchhee
Confidence            44432     33556778874  467766666544        456666655 33 222222344568999999999887


Q ss_pred             EEecCCCCceeEEEEeCCCCe--e--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC
Q 001310          546 SCGTSKEGESFLVEWNESEGA--I--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~--~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  621 (1103)
                      .+..   ..+.|+.+++....  .  .+.+.......+....+++..+|+..++....+.|.+++.+ |+.+..+.... 
T Consensus       150 v~ds---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p~-  224 (246)
T PF08450_consen  150 VADS---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELPV-  224 (246)
T ss_dssp             EEET---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-SS-
T ss_pred             eccc---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCCC-
Confidence            6543   25568888875322  1  22232222111347889999999888887789999999987 88888888763 


Q ss_pred             CCCCceEEEe-cCCCEEEEEE
Q 001310          622 LPENPRICFN-KNGTLLAVIA  641 (1103)
Q Consensus       622 ~~~v~~v~~s-~~g~~l~~~~  641 (1103)
                       ..+++++|. ++.+.|++.+
T Consensus       225 -~~~t~~~fgg~~~~~L~vTt  244 (246)
T PF08450_consen  225 -PRPTNCAFGGPDGKTLYVTT  244 (246)
T ss_dssp             -SSEEEEEEESTTSSEEEEEE
T ss_pred             -CCEEEEEEECCCCCEEEEEe
Confidence             357899994 6766666554

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=98.62  E-value=2.7e-08  Score=110.64  Aligned_cols=216  Identities=15%  Similarity=0.224  Sum_probs=155.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-CceEEE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-KTIKVW  470 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-~~i~iw  470 (1103)
                      +..|....+|++||-+.+.|+.|+..|.|+++++.+|....   ...+|..+|+.+.=+.||.. .|.+.+.. --..+|
T Consensus      1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred             hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence            66789999999999999999999999999999999997655   67799999999999999984 23333333 357899


Q ss_pred             eCC-CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC----CccEEEEEEccCCCEEE
Q 001310          471 DAV-TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP----GLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       471 d~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~~~~s~dg~~l~  545 (1103)
                      ++. ++...+++.+-    .++.|+.+  ...-+.|.......+||+++.....++-..    ...-++..|+|+.++++
T Consensus      1173 ~~~s~~~~~Hsf~ed----~~vkFsn~--~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDED----KAVKFSNS--LQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred             ccccccCcccccccc----ceeehhhh--HHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence            976 34555555432    34455432  223344445567889999998776653211    12336788999998887


Q ss_pred             EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1103)
                      --         =.+||.+..+.++.|....   ..+ .-.|+|.|+.++.-++     |||+++.+.++..+.-..    
T Consensus      1247 nd---------GvLWDvR~~~aIh~FD~ft---~~~-~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq---- 1304 (1516)
T KOG1832|consen 1247 ND---------GVLWDVRIPEAIHRFDQFT---DYG-GGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ---- 1304 (1516)
T ss_pred             eC---------ceeeeeccHHHHhhhhhhe---ecc-cccccCCCceEEeech-----hhhhHHHHHHhcCccccc----
Confidence            42         2479999888877776544   222 2349999999998775     999999998887765432    


Q ss_pred             ceEEEecCCCEEEE
Q 001310          626 PRICFNKNGTLLAV  639 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~  639 (1103)
                      ..+.|+..|..++.
T Consensus      1305 c~VtFNstG~VmYa 1318 (1516)
T KOG1832|consen 1305 CAVTFNSTGDVMYA 1318 (1516)
T ss_pred             eEEEeccCccchhh
Confidence            57889888876654

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=98.58  E-value=6e-05  Score=78.34  Aligned_cols=285  Identities=12%  Similarity=0.125  Sum_probs=157.2

Q ss_pred             eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----------CCCcEEEEECCCCeeEEEEcCCCC---
Q 001310          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIKIWDMNKVQLLTTIDAGGG---  621 (1103)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~iwd~~~~~~~~~~~~~~~---  621 (1103)
                      .+++++|..+++.+-.+....     .-.+..+|+++.+++++          ..-.|.+||..+-.....+..+..   
T Consensus        17 ~rv~viD~d~~k~lGmi~~g~-----~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~   91 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTGF-----LGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRA   91 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEES-----SEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B-
T ss_pred             ceEEEEECCCCcEEEEeeccc-----CCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchh
Confidence            459999999999888777633     45577899999998754          334689999999988876655432   


Q ss_pred             --CCCCceEEEecCCCEEEEEEC--CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCC
Q 001310          622 --LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKED  697 (1103)
Q Consensus       622 --~~~v~~v~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  697 (1103)
                        .......+++.||+++++..-  ..+|.+.|+..++.+..+......    -+-|.+                     
T Consensus        92 ~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~----~iyP~~---------------------  146 (342)
T PF06433_consen   92 QVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCW----LIYPSG---------------------  146 (342)
T ss_dssp             -BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEE----EEEEEE---------------------
T ss_pred             eecccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEE----EEEecC---------------------
Confidence              123456889999998887543  467889999888776655432111    111110                     


Q ss_pred             CccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccc
Q 001310          698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  777 (1103)
Q Consensus       698 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  777 (1103)
                      .+.+.+-+.||++....++............-......-+..-+++..+..++..+.+|.++--++.......       
T Consensus       147 ~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~-------  219 (342)
T PF06433_consen  147 NRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKF-------  219 (342)
T ss_dssp             TTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEE-------
T ss_pred             CCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccc-------
Confidence            0112333334443333333111111110010011111222233455555566667778888777766543211       


Q ss_pred             cCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE-c--------C--CeEEEEEcCCceeeEEecCCCCCe
Q 001310          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-S--------G--GVISLYIVMTFKTILTIMPPSPTA  846 (1103)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~--------d--g~i~iwd~~~~~~~~~~~~~~~~i  846 (1103)
                        ..-|...+..... ...    ..+.-.-+++++....|.+. .        +  ..|.++|+.+++.+.++.. ..++
T Consensus       220 --~~~~~~~t~~e~~-~~W----rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~  291 (342)
T PF06433_consen  220 --GKPWSLLTDAEKA-DGW----RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPI  291 (342)
T ss_dssp             --EEEEESS-HHHHH-TTE----EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEE
T ss_pred             --cCcccccCccccc-cCc----CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCcc
Confidence              1122221100000 000    11222346666655444432 1        2  1388889999999998873 3468


Q ss_pred             eEEEEcCCCCCEEEEE-eCCCeEEEEEcCCceeEEEecc
Q 001310          847 TSLAFNPHDNNVIAIG-MDDSTILIYNARSSEVISKLEG  884 (1103)
Q Consensus       847 ~~l~~s~~d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~  884 (1103)
                      .+++.+.++..+|++. ..++.+.+||..+|+.+..+++
T Consensus       292 ~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  292 DSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             SEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred             ceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence            8999999666577655 4579999999999999988874

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.57  E-value=0.00057  Score=66.44  Aligned_cols=136  Identities=13%  Similarity=-0.039  Sum_probs=89.1

Q ss_pred             cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCC
Q 001310          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN  579 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~  579 (1103)
                      .+++.|+..+.+.--|..++......... .++.+-+.- -|++++.+..    .+.+++.+.++|.....+....   .
T Consensus        24 T~v~igSHs~~~~avd~~sG~~~We~ilg-~RiE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~---~   94 (354)
T KOG4649|consen   24 TLVVIGSHSGIVIAVDPQSGNLIWEAILG-VRIECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILE---T   94 (354)
T ss_pred             eEEEEecCCceEEEecCCCCcEEeehhhC-ceeeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehh---h
Confidence            46777788888887777777766543322 233332222 4667888776    4449999999998888777644   2


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001310          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  646 (1103)
Q Consensus       580 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i  646 (1103)
                      --......+++..+.+|+.|++.+..|..+..++...+..+..  ..+-+..|....|..+...|.+
T Consensus        95 vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~v  159 (354)
T KOG4649|consen   95 VKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAV  159 (354)
T ss_pred             hccceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceE
Confidence            2223446778999999999999999999999998887665443  2334445522233334433433

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=1.6e-06  Score=89.86  Aligned_cols=309  Identities=15%  Similarity=0.139  Sum_probs=192.4

Q ss_pred             ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  812 (1103)
                      |.+.|+.+..+ -.+++++++-||.++.|.-...                    .|.....   ....|...+.+++.+-
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i--------------------sGvEfVK---hFraHL~~I~sl~~S~   63 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI--------------------SGVEFVK---HFRAHLGVILSLAVSY   63 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCc--------------------cceeehh---hhHHHHHHHHhhhccc
Confidence            56666666443 5677999999999999863220                    1111111   1124778899999999


Q ss_pred             CCCEEEEEc--CCeEEEEEcCCceeeEEecCCC-CCeeEEEEcCCCC-CEEE-EEeCCCeEEEEEcCCce-eEEEec-cC
Q 001310          813 NDAYLFSAS--GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDN-NVIA-IGMDDSTILIYNARSSE-VISKLE-GH  885 (1103)
Q Consensus       813 d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~-~~la-sg~~dg~v~iwd~~~~~-~~~~l~-~h  885 (1103)
                      ||.++.+.+  |..++++|+.+...+.-++... ....+...++.|. ..|| +.-.+|.+.++|-.... ....++ -|
T Consensus        64 dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH  143 (558)
T KOG0882|consen   64 DGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH  143 (558)
T ss_pred             cceeEeeccCcccceeEEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc
Confidence            999999976  5789999998765543332211 1122233344111 1333 33467899999976543 334444 49


Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeee-----eeec---CCCcccCCCCceEEEEcCCCCEEEE-EeC
Q 001310          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR-----SLQT---PDGVMTLAPSETHIQFHKDQTRFLL-VHE  956 (1103)
Q Consensus       886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~~~---~~~~~~~~~~v~~l~fs~dg~~l~~-~~d  956 (1103)
                      ..+|..+.+++-+..++|....|.|.-|.... ..+..+     -++.   +-+....-+...++.|||+|..+++ +.|
T Consensus       144 ~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~-~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~D  222 (558)
T KOG0882|consen  144 FSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG-PFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPD  222 (558)
T ss_pred             cCceEEEEeeccccceeeccccceeEeecCCC-cccCccccccccccccchhhcccccccCccceEEccccCcccccCcc
Confidence            99999999999999999999999999999884 111000     0000   0011111136789999999999998 688


Q ss_pred             CeEEEEECCCceEEEEeeC-------------------------------CC-CcCeEEEEEccCCCEEEEEecCCcEEE
Q 001310          957 THLAIYEAEELTCLKQWFP-------------------------------IS-SVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus       957 ~~v~iwd~~~~~~~~~~~~-------------------------------~h-~~~v~~l~fs~dg~~l~t~~~dg~v~v 1004 (1103)
                      ..|++++..+|+.+..+-.                               .| ...-+.++|...|.+|+-++-=| |+|
T Consensus       223 rkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikv  301 (558)
T KOG0882|consen  223 RKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKV  301 (558)
T ss_pred             cEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEE
Confidence            9999999999877654210                               02 23346678999999999887665 999


Q ss_pred             EeCCCceeEEeeccccccCCCC-----CCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEE
Q 001310         1005 HEASNLEVQCRILSTAYLRPTT-----SHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVI 1069 (1103)
Q Consensus      1005 Wd~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw 1069 (1103)
                      .++.+++....+.......-..     ...+.........+...+ .+.+.+| +..++++-....++++
T Consensus       302 in~~tn~v~ri~gk~e~ir~~~~sl~q~~~k~~~~~~~~~a~~np-~~~~~~d-pt~~c~a~kk~rfylf  369 (558)
T KOG0882|consen  302 INLDTNTVVRILGKDEAIRFTRLSLYQGAQKSNLAALEVAASNNP-LLEFQKD-PTIVCTAFKKNRFYLF  369 (558)
T ss_pred             EEeecCeEEEEeccchhhhhhhHHHHhhhhhccchhhhhhhccCc-ccccCCC-CeEEEeeeecceEEEE
Confidence            9999998875544211100000     000000000001111111 2235566 8899999999999988

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.55  E-value=1.1e-05  Score=90.48  Aligned_cols=183  Identities=12%  Similarity=0.072  Sum_probs=119.1

Q ss_pred             EEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEEe
Q 001310          809 ALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKL  882 (1103)
Q Consensus       809 ~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l  882 (1103)
                      -++|||+.+...+  .+.+.+.|.++.+...++.-.. ....++++| +++++++.+.+.    ++..-+..+...+..+
T Consensus       199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdg-npd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDG-NLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             ccCCCCCEeecccceeEEEEEEECccceEEEEEEeCC-CcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            3567887765554  4678889999888877765433 446789999 888888776322    2333322221111111


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC----CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eC
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG----WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HE  956 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~----~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d  956 (1103)
                      .-.  .+  -++.++|++...  .++.|.+.|..+    +. .....+....       ....+++||||++++++  .+
T Consensus       277 ni~--~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~-~v~~yIPVGK-------sPHGV~vSPDGkylyVanklS  342 (635)
T PRK02888        277 NIA--RI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGS-ALTRYVPVPK-------NPHGVNTSPDGKYFIANGKLS  342 (635)
T ss_pred             chH--HH--HHhhhCCCEEEE--CCCEEEEEECCccccCCc-ceEEEEECCC-------CccceEECCCCCEEEEeCCCC
Confidence            100  00  133467877665  367899999887    22 1122333333       46789999999999985  67


Q ss_pred             CeEEEEECCCceE------------EEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          957 THLAIYEAEELTC------------LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       957 ~~v~iwd~~~~~~------------~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      .++.|.|+.+.+.            +.+...  ...-...+|.++|....|-.-|..|..||+.+
T Consensus       343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CcEEEEEChhhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence            8999999987553            333222  33445678999998888888999999999987

>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.54  E-value=1.9e-06  Score=89.37  Aligned_cols=258  Identities=15%  Similarity=0.089  Sum_probs=177.2

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-CCceEEEeCC
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAV  473 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~  473 (1103)
                      |...|+.+.-+ -.+++.+++-||.++.|.-..-..+.-...+..|...|.+++.+-|+.  ++.|.+. |+.++++|++
T Consensus         8 hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~--L~~Sv~d~Dhs~KvfDvE   84 (558)
T KOG0882|consen    8 HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGW--LFRSVEDPDHSVKVFDVE   84 (558)
T ss_pred             ccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccce--eEeeccCcccceeEEEee
Confidence            77777776655 578999999999999998765232333335678999999999999998  7888777 9999999987


Q ss_pred             CCceeEEeecCCCceEEEEeeecCC-c--cEEEEEECCCeEEEEEcCCCCee--EEecCCCccEEEEEEccCCCEEEEEe
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKEN-I--HFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~-~--~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      .-..+..++-..-+ ..+.|..+++ -  ..-++.-.+|.+.++|-....+.  ..-..|..+|..+.+++-+..+++.-
T Consensus        85 n~DminmiKL~~lP-g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD  163 (558)
T KOG0882|consen   85 NFDMINMIKLVDLP-GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSID  163 (558)
T ss_pred             ccchhhhcccccCC-CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeecc
Confidence            65544322211111 1112221211 1  23344456788999987655433  34456788999999999999888763


Q ss_pred             cCCCCceeEEEEeCCC------CeeEEEEe------cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 001310          549 TSKEGESFLVEWNESE------GAIKRTYQ------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~------~~~~~~~~------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  616 (1103)
                          ..|.|.-|....      .+..-.++      +....+....++.|+|++..+.+-+.|..|++++..+|+.++.+
T Consensus       164 ----~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei  239 (558)
T KOG0882|consen  164 ----ISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI  239 (558)
T ss_pred             ----ccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence                367799998762      11111111      11112366789999999999999999999999999998766544


Q ss_pred             cCCC-------------------------------CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecc
Q 001310          617 DAGG-------------------------------GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       617 ~~~~-------------------------------~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                      ....                               +...-..++|...|++|+.++-=| |++.++.++...+.+.
T Consensus       240 DE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~g  314 (558)
T KOG0882|consen  240 DEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVRILG  314 (558)
T ss_pred             hccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEEEec
Confidence            2110                               111234678888999999988765 8999999987776553

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.54  E-value=2.9e-07  Score=92.06  Aligned_cols=168  Identities=16%  Similarity=0.105  Sum_probs=128.3

Q ss_pred             eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC
Q 001310          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1103)
Q Consensus       338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d  417 (1103)
                      +.++||-+-.-+-++.+.+..|-+-|+++|....                    +. ..+.|.++.|...+.++..|..+
T Consensus       215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn  273 (425)
T KOG2695|consen  215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN  273 (425)
T ss_pred             hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence            3347765433233555667889999999986442                    22 56789999999999999999999


Q ss_pred             CeEEEEEecCCCcc--ccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCCCce---eEEeecCCCceEEE
Q 001310          418 HIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSR---TYSFEGHGAPVYSL  491 (1103)
Q Consensus       418 ~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~~~~~v~~~  491 (1103)
                      |.|..+|+..+..-  ... .---|...|+++..-. +++  +|.+.+.+|.|++||.+.-++   +++..||-..-..+
T Consensus       274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l  350 (425)
T KOG2695|consen  274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL  350 (425)
T ss_pred             CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence            99999999875211  111 1225888999998776 555  788899999999999987776   88999998776666


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG  529 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~  529 (1103)
                      -++..+....+++++.|...|||.++.+....+++...
T Consensus       351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~  388 (425)
T KOG2695|consen  351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY  388 (425)
T ss_pred             ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence            66667777789999999999999999888777665443

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.53  E-value=6.8e-05  Score=88.18  Aligned_cols=251  Identities=14%  Similarity=0.167  Sum_probs=147.6

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeE
Q 001310          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  658 (1103)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  658 (1103)
                      ..|.++.|..+.+.++.+...|.|.+-|..+......-...   ..|.+++||||++.++..+..+++.+.... -.++.
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd---~GI~aaswS~Dee~l~liT~~~tll~mT~~-f~~i~  144 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVD---NGISAASWSPDEELLALITGRQTLLFMTKD-FEPIA  144 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeecc---CceEEEeecCCCcEEEEEeCCcEEEEEecc-ccchh
Confidence            57999999999999999999999999988876554333322   348999999999999999998887765432 11110


Q ss_pred             eccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEE
Q 001310          659 AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKIS  738 (1103)
Q Consensus       659 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~  738 (1103)
                      ....+.      ...+.+....+|++...-.|.                                          .....
T Consensus       145 E~~L~~------d~~~~sk~v~VGwGrkeTqfr------------------------------------------gs~gr  176 (1265)
T KOG1920|consen  145 EKPLDA------DDERKSKFVNVGWGRKETQFR------------------------------------------GSEGR  176 (1265)
T ss_pred             cccccc------ccccccccceecccccceeee------------------------------------------cchhh
Confidence            000000      000001111111111111110                                          00000


Q ss_pred             EEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeecc-CCCCCCCCCeeEEEEecCCCEE
Q 001310          739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND-TTDSNSQEAVPCFALSKNDAYL  817 (1103)
Q Consensus       739 ~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~s~d~~~l  817 (1103)
                      ..+.-+                                              ....+ +......+.-+.+.|--||+++
T Consensus       177 ~~~~~~----------------------------------------------~~~ek~~~~~~~~~~~~~IsWRgDg~~f  210 (1265)
T KOG1920|consen  177 QAARQK----------------------------------------------IEKEKALEQIEQDDHKTSISWRGDGEYF  210 (1265)
T ss_pred             hccccc----------------------------------------------ccccccccchhhccCCceEEEccCCcEE
Confidence            000000                                              00000 0000022333568899999999


Q ss_pred             EEEc-----C-CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe---CCCeEEEEEcCC---ceeEEEeccC
Q 001310          818 FSAS-----G-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DDSTILIYNARS---SEVISKLEGH  885 (1103)
Q Consensus       818 ~~~~-----d-g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~---~~~~~~l~~h  885 (1103)
                      |+..     + ..|++||.+ |..-..-....+.-.+++|-| .|.++|+-.   .|+.|.++.-+.   |+....+...
T Consensus       211 AVs~~~~~~~~RkirV~drE-g~Lns~se~~~~l~~~LsWkP-sgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p~d  288 (1265)
T KOG1920|consen  211 AVSFVESETGTRKIRVYDRE-GALNSTSEPVEGLQHSLSWKP-SGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFPLD  288 (1265)
T ss_pred             EEEEEeccCCceeEEEeccc-chhhcccCcccccccceeecC-CCCeEeeeeecCCCCcEEEEecCCccccccccCCccc
Confidence            9853     4 679999987 544333333344557899999 888888753   455799987543   2223333434


Q ss_pred             CCCEEEEEEccCCCEEEE---EeCCCeEEEEEcCCCceeeeeeeecC
Q 001310          886 SKRVTGLVFSDALNILVS---SGGDAQIFVWDVDGWGIQTCRSLQTP  929 (1103)
Q Consensus       886 ~~~V~~l~~s~dg~~l~s---~s~dg~I~iwd~~~~~~~~~~~~~~~  929 (1103)
                      ..+|..++|+.++..||+   ......|++|-+.+......+.+..+
T Consensus       289 e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~  335 (1265)
T KOG1920|consen  289 EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFS  335 (1265)
T ss_pred             ccchheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecc
Confidence            455999999999999998   55556699999988665444444443

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.52  E-value=1.9e-05  Score=88.73  Aligned_cols=104  Identities=13%  Similarity=0.123  Sum_probs=75.8

Q ss_pred             EecCCCEEEEEcCCeEEEEEcCC-----ceeeEEecCCCCCeeEEEEcCCCCCEEEE-EeCCCeEEEEEcCCcee-----
Q 001310          810 LSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEV-----  878 (1103)
Q Consensus       810 ~s~d~~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~-----  878 (1103)
                      +.++|++... .+++|.+.|..+     .+.+..+. -......++++| ||+++++ +..+.+|.|.|+.+.+.     
T Consensus       284 ~vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIP-VGKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~  360 (635)
T PRK02888        284 AVKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVP-VPKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGK  360 (635)
T ss_pred             hhhCCCEEEE-CCCEEEEEECCccccCCcceEEEEE-CCCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhcc
Confidence            4557877665 467899999988     34444444 456678899999 7776655 45588999999987542     


Q ss_pred             -------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 001310          879 -------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       879 -------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~  917 (1103)
                             +.+.+--.+ -...+|.++|+...|..-|..|..||+..
T Consensus       361 ~~~~~~vvaevevGlG-PLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        361 IKPRDAVVAEPELGLG-PLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             CCccceEEEeeccCCC-cceEEECCCCCEEEeEeecceeEEEehHH
Confidence                   333332222 34578999999999999999999999986

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.49  E-value=3.7e-06  Score=82.81  Aligned_cols=251  Identities=17%  Similarity=0.222  Sum_probs=160.4

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc--cccceEecccc------------ccEEEEEEecCCCceEEEE
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHV------------GNVNDLAFSAPCKQISVIT  460 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~--~~~~~~l~~h~------------~~v~~~~~s~d~~~~~l~s  460 (1103)
                      ....|+++.|...|.|||+|...|.|.+|.-+....  .+-...+.+|.            ..|..+.|..++..-.++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            446799999999999999999999999997654321  12222344553            3588888887766556777


Q ss_pred             EcCCCceEEEeCCCCc-------------------ee--------EEe----------------ecCCCceEEEEeeecC
Q 001310          461 CGDDKTIKVWDAVTGS-------------------RT--------YSF----------------EGHGAPVYSLCPHAKE  497 (1103)
Q Consensus       461 ~~~d~~i~iwd~~~~~-------------------~~--------~~~----------------~~~~~~v~~~~~~~~~  497 (1103)
                      .+.|++|++|.+....                   ++        ..+                ..|.--+.++.+.  .
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~N--s  182 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFN--S  182 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeec--C
Confidence            7889999999864321                   00        000                2355556677663  3


Q ss_pred             CccEEEEEECCCeEEEEEcCCCCeeE---EecCCCc-----cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE-
Q 001310          498 NIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGL-----GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK-  568 (1103)
Q Consensus       498 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~-----~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~-  568 (1103)
                      |.+.+++ +.|=.|.+|+++-.....   .++.+.-     -|++..|+|....++.-+.   ..|.|.+-|++...+- 
T Consensus       183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd  258 (460)
T COG5170         183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD  258 (460)
T ss_pred             chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence            4455555 456789999887544322   3333322     3778889996544433322   1556999998743210 


Q ss_pred             ---EE----Eec-----ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCC----------CCC
Q 001310          569 ---RT----YQG-----LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGL----------PEN  625 (1103)
Q Consensus       569 ---~~----~~~-----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~----------~~v  625 (1103)
                         ..    +.+     ...-...|..+.|+++|+++++-+ --+++|||++. ..++.+++.|...          ..|
T Consensus       259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai  337 (460)
T COG5170         259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI  337 (460)
T ss_pred             CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence               00    011     001125688899999998888755 36899999975 4567776554210          111


Q ss_pred             ---ceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          626 ---PRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       626 ---~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                         ..+.||.|.+.+.+|+..+..-++-..
T Consensus       338 fdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         338 FDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             eeeEEEEecCCcccccccccccceeeeccc
Confidence               357889999999999998888887644

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.48  E-value=0.00019  Score=79.67  Aligned_cols=303  Identities=13%  Similarity=0.104  Sum_probs=157.7

Q ss_pred             ccCCCEEEEEecC-----CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee
Q 001310          538 SANGRRLFSCGTS-----KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL  612 (1103)
Q Consensus       538 s~dg~~l~~~~~~-----~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~  612 (1103)
                      |||+++++.....     .+..+.+.++|+.+++....... .   ..+....|+|+|+.++... ++.|++++..++..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~---~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~   75 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P---PKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQE   75 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E---TTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c---cccccceeecCCCeeEEEe-cCceEEEECCCCCe
Confidence            5788887764321     11245589999999876655444 3   5688889999999998886 57899999888744


Q ss_pred             EEEEcCCCC----------------CCCCceEEEecCCCEEEEEECC-CeEEEEEcC---CCCeeEeccccccceeeeEE
Q 001310          613 LTTIDAGGG----------------LPENPRICFNKNGTLLAVIANE-NRIKILETP---ESNSVDAAGVLSDNLRKLSV  672 (1103)
Q Consensus       613 ~~~~~~~~~----------------~~~v~~v~~s~~g~~l~~~~~d-g~i~iw~~~---~~~~~~~~~~~~~~i~~~~~  672 (1103)
                      .+ +...+.                ...-..+.|||||++|+....| ..+..+.+.   ....      ....+..+.+
T Consensus        76 ~~-lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------~yp~~~~~~Y  148 (353)
T PF00930_consen   76 TQ-LTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------QYPEVESIRY  148 (353)
T ss_dssp             EE-SES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE------SS-EEEEEE-
T ss_pred             EE-eccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc------cCCccccccc
Confidence            43 222210                1223678999999999876543 334333322   1110      0000111111


Q ss_pred             ecCCceeeeeccCCceEecCCCCCCCccceeecccc--ccccccccccCCccceeeecc--CccccccEEEEEEecCCcE
Q 001310          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN--KSEVEKPLFARPSECQSLLLP--SKVKANKISRLTYNNGGQA  748 (1103)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~--~i~~w~~~~~~~~~~~~~~~~--~~~~~~~i~~~~~s~~g~~  748 (1103)
                      .                            ..|....  .+.++++..++..   .+..+  .......+..+.|.+++..
T Consensus       149 P----------------------------k~G~~np~v~l~v~~~~~~~~~---~~~~~~~~~~~~~yl~~v~W~~d~~~  197 (353)
T PF00930_consen  149 P----------------------------KAGDPNPRVSLFVVDLASGKTT---ELDPPNSLNPQDYYLTRVGWSPDGKR  197 (353)
T ss_dssp             -----------------------------BTTS---EEEEEEEESSSTCCC---EE---HHHHTSSEEEEEEEEEETTEE
T ss_pred             C----------------------------CCCCcCCceEEEEEECCCCcEE---EeeeccccCCCccCcccceecCCCcE
Confidence            1                            0111111  2333444332222   11111  1224567889999999984


Q ss_pred             EEEeecC---ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe-cCCCEEEEEc--C
Q 001310          749 IFALASN---GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS-KNDAYLFSAS--G  822 (1103)
Q Consensus       749 l~~~~~d---g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s-~d~~~l~~~~--d  822 (1103)
                      +++.-.+   ..+.+.                    ..|+.++.+.........+--.......+. +++..++..+  +
T Consensus       198 l~~~~~nR~q~~~~l~--------------------~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~  257 (353)
T PF00930_consen  198 LWVQWLNRDQNRLDLV--------------------LCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERD  257 (353)
T ss_dssp             EEEEEEETTSTEEEEE--------------------EEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETT
T ss_pred             EEEEEcccCCCEEEEE--------------------EEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcC
Confidence            4443322   222222                    233333333222222111222233456665 7776666654  4


Q ss_pred             C--eEEEEEcCCceeeEEecCCCCCeeE-EEEcCCCCCEEEEEeCCC----eEEEEEcCCceeEEEeccCCCCEEEEEEc
Q 001310          823 G--VISLYIVMTFKTILTIMPPSPTATS-LAFNPHDNNVIAIGMDDS----TILIYNARSSEVISKLEGHSKRVTGLVFS  895 (1103)
Q Consensus       823 g--~i~iwd~~~~~~~~~~~~~~~~i~~-l~~s~~d~~~lasg~~dg----~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  895 (1103)
                      |  .|.+++...+. .+.+....-.|+. +.++++++.+.+++..++    .|+.-++.++..+..+....+.-..+.||
T Consensus       258 G~~hly~~~~~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S  336 (353)
T PF00930_consen  258 GYRHLYLYDLDGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS  336 (353)
T ss_dssp             SSEEEEEEETTSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-
T ss_pred             CCcEEEEEcccccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEEC
Confidence            4  46777776665 4455555566755 778884455555666533    66666777234455555443333689999


Q ss_pred             cCCCEEEEE
Q 001310          896 DALNILVSS  904 (1103)
Q Consensus       896 ~dg~~l~s~  904 (1103)
                      |+|++++-.
T Consensus       337 pdg~y~v~~  345 (353)
T PF00930_consen  337 PDGKYYVDT  345 (353)
T ss_dssp             TTSSEEEEE
T ss_pred             CCCCEEEEE
Confidence            999988753

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG4714 consensus Nucleoporin [Nuclear structure]

Probab=98.48  E-value=3.5e-06  Score=81.22  Aligned_cols=202  Identities=15%  Similarity=0.214  Sum_probs=119.0

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCce-eEEEecc-CCCCEEEEEEccCCCEEEEEe-----CCCeEEEEEcCCCceeeeeeee
Q 001310          855 DNNVIAIGMDDSTILIYNARSSE-VISKLEG-HSKRVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQ  927 (1103)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~-~~~~l~~-h~~~V~~l~~s~dg~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~  927 (1103)
                      -+..++++..||.+.+.+.+.-. ...+... |.+. .+......++.+.+++     .-+..++|+++..+        
T Consensus       100 ~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~-as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~--------  170 (319)
T KOG4714|consen  100 TDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGS-ASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK--------  170 (319)
T ss_pred             cCCceEecCCCceEEEEechHHHhhhhhcccccccc-cccceeecccEEecCCcceEeeccceeeecccccc--------
Confidence            45679999999999999877521 1111111 2221 1122222344444322     11235667666422        


Q ss_pred             cCCCcccCCCCceEEEEcCCCCEEEE-E-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc-CCCEEEEEecCCcEEE
Q 001310          928 TPDGVMTLAPSETHIQFHKDQTRFLL-V-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC-DCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus       928 ~~~~~~~~~~~v~~l~fs~dg~~l~~-~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~-dg~~l~t~~~dg~v~v 1004 (1103)
                      ++.........|.+++-+|..+.+++ | .||.+.+||+++...+..++..|..+|+.+.|.| ++..|+|+++||.+--
T Consensus       171 t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~  250 (319)
T KOG4714|consen  171 TLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWH  250 (319)
T ss_pred             cccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEE
Confidence            11111111125889999998777766 4 7899999999999888888889999999999998 6688999999999999


Q ss_pred             EeCCCceeEEeecc---ccccCCCCCCC--ceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310         1005 HEASNLEVQCRILS---TAYLRPTTSHD--KILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus      1005 Wd~~~~~~~~~~~~---~~~~~~~~~~~--~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
                      ||..+--+-+....   +.|+...+-..  ..--+.......|.+..+.     |..|++|++-+.|++.+
T Consensus       251 wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~~ll~~~~~SinsfDV~-----g~~lVcgtd~eaIyl~~  316 (319)
T KOG4714|consen  251 WDASTTFLSISNQASVISSWLSGDPVKSRIEITSLLPSRSLSINSFDVL-----GPCLVCGTDAEAIYLTR  316 (319)
T ss_pred             EcCCCceEEecCccccccccccCCcccceEeeeccccccceeeeeeecc-----CceEEeccccceEEEec
Confidence            99886333221111   11111111000  0000111111122222222     67899999999999876

>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]

Probab=98.47  E-value=0.0013  Score=64.11  Aligned_cols=101  Identities=7%  Similarity=-0.018  Sum_probs=71.4

Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN  633 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~  633 (1103)
                      .+.+.-.|..+|+.+-.....    ..+.+-+.- -|++++.|...|.+++.+..+|.....+...+...  ......++
T Consensus        32 s~~~~avd~~sG~~~We~ilg----~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk--~~a~~d~~  104 (354)
T KOG4649|consen   32 SGIVIAVDPQSGNLIWEAILG----VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK--VRAQCDFD  104 (354)
T ss_pred             CceEEEecCCCCcEEeehhhC----ceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc--cceEEcCC
Confidence            445677788888765443221    223332222 36789999999999999999998877765543321  23456678


Q ss_pred             CCEEEEEECCCeEEEEEcCCCCeeEecc
Q 001310          634 GTLLAVIANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       634 g~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                      +.++..++.|++.+..|..+...+...+
T Consensus       105 ~glIycgshd~~~yalD~~~~~cVyksk  132 (354)
T KOG4649|consen  105 GGLIYCGSHDGNFYALDPKTYGCVYKSK  132 (354)
T ss_pred             CceEEEecCCCcEEEecccccceEEecc
Confidence            9999999999999999998887776644

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.46  E-value=6.3e-07  Score=62.46  Aligned_cols=39  Identities=31%  Similarity=0.595  Sum_probs=37.2

Q ss_pred             ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1103)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd  914 (1103)
                      |+++.++.+|.+.|.+|+|+|++.+|++++.|+.|++||
T Consensus         1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            467899999999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.45  E-value=4.1e-06  Score=94.59  Aligned_cols=180  Identities=16%  Similarity=0.179  Sum_probs=132.9

Q ss_pred             CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEE
Q 001310          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1103)
Q Consensus       813 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1103)
                      ++..++.|+ ...+..+|+.+.+..+...-..+.|+-+..   +++++.+|...|+|.+-|..+.+.++++.+|++.|.+
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD  222 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD  222 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence            344455555 677889999998888877655556666665   6789999999999999999999999999999999976


Q ss_pred             EEEccCCCEEEEEeC---------CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC--CEEEEEeCCeEE
Q 001310          892 LVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ--TRFLLVHETHLA  960 (1103)
Q Consensus       892 l~~s~dg~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg--~~l~~~~d~~v~  960 (1103)
                      +..  .|+.|+++|.         |.-|+|||+..-+...  +++.+.+       ..-+.|.|.-  +..+++..|+..
T Consensus       223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~--PI~~~~~-------P~flrf~Psl~t~~~V~S~sGq~q  291 (1118)
T KOG1275|consen  223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS--PIQFPYG-------PQFLRFHPSLTTRLAVTSQSGQFQ  291 (1118)
T ss_pred             eec--cCCeEEEeecccccccccccchhhhhhhhhhhccC--CcccccC-------chhhhhcccccceEEEEeccccee
Confidence            555  5899999985         4568999998744222  3333332       3456777753  334446889999


Q ss_pred             EEECC---CceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001310          961 IYEAE---ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus       961 iwd~~---~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
                      +-|..   +...-......-+..+..+++|++|..||.+..+|.|.+|.
T Consensus       292 ~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  292 FVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             eccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence            98843   22111112222355699999999999999999999999998

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.39  E-value=4.8e-05  Score=78.29  Aligned_cols=251  Identities=12%  Similarity=0.148  Sum_probs=147.1

Q ss_pred             eccCCCccEEEEEECCCCC-EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310          391 LVRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i  469 (1103)
                      ++.+|...|..++|||..+ +|..++.+..|+|.|+++..+..   .+..| ..+++++|.-|... +++.|...|.|.|
T Consensus       188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv  262 (463)
T KOG1645|consen  188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV  262 (463)
T ss_pred             cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence            5788999999999999877 78888999999999999976554   34456 78999999999876 8999999999999


Q ss_pred             EeCCCCce-eEEeec--CCCceEEEEeeec----CCccEEEEEECCCeEEEEEcCCCCe--eEEecC-CCccEEEEEEcc
Q 001310          470 WDAVTGSR-TYSFEG--HGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDA-PGLGCTRMAYSA  539 (1103)
Q Consensus       470 wd~~~~~~-~~~~~~--~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~-~~~~i~~~~~s~  539 (1103)
                      ||++..+- +..+.+  ...+|..++..+.    +.+.+++..+.+  +..|.+.....  ...... ..+.+.++...+
T Consensus       263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~  340 (463)
T KOG1645|consen  263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG  340 (463)
T ss_pred             EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence            99986543 222222  2334444432211    122344444333  34455433222  112222 234556666666


Q ss_pred             CCCEEEEEecCCCCceeEE----EEeCCCCeeEEEEec-c---cccC-CceEEEEEcCCCCEEEE-EeCCCcEEEEECCC
Q 001310          540 NGRRLFSCGTSKEGESFLV----EWNESEGAIKRTYQG-L---QLQH-NSVSVVHFDTAKDQILA-AGDDHVIKIWDMNK  609 (1103)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~~-~---~~~~-~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~  609 (1103)
                      -.+.++...........++    --|..+|..+..-+. +   ...+ ..-..+.-.++.++++. +...+.+.+||..+
T Consensus       341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s  420 (463)
T KOG1645|consen  341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS  420 (463)
T ss_pred             ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence            5566665544321111111    112223333322111 1   0000 01111222345566655 55778899999999


Q ss_pred             CeeEEEEcCCCCCCCCceEEEec-C-CCEEEEEECCCeEEEEEcC
Q 001310          610 VQLLTTIDAGGGLPENPRICFNK-N-GTLLAVIANENRIKILETP  652 (1103)
Q Consensus       610 ~~~~~~~~~~~~~~~v~~v~~s~-~-g~~l~~~~~dg~i~iw~~~  652 (1103)
                      ++.++++....   ++..++... + +.+|++-++ ..++||..+
T Consensus       421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LTd-~~v~Iyk~e  461 (463)
T KOG1645|consen  421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLTD-DRVHIYKNE  461 (463)
T ss_pred             hheeeecccCc---ceeecceeecCCcchhhheec-ceEEEEecC
Confidence            99999998763   355555443 2 446666655 468887654

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=98.38  E-value=0.00011  Score=86.37  Aligned_cols=238  Identities=10%  Similarity=0.194  Sum_probs=139.1

Q ss_pred             cccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC
Q 001310          734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  813 (1103)
Q Consensus       734 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  813 (1103)
                      ...|.++.|..++..++.+...|.+.+-|......               .      +..      .-.+.|.+++||||
T Consensus        68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~---------------e------ivg------~vd~GI~aaswS~D  120 (1265)
T KOG1920|consen   68 DDEIVSVQFLADTNSICVITALGDIILVDPETLEL---------------E------IVG------NVDNGISAASWSPD  120 (1265)
T ss_pred             CcceEEEEEecccceEEEEecCCcEEEEcccccce---------------e------eee------eccCceEEEeecCC
Confidence            36899999999999999999999998865332211               0      000      15678999999999


Q ss_pred             CCEEEEEcCCeEEEEEcCCceeeEEecCC-----CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-EEEeccCCC
Q 001310          814 DAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-ISKLEGHSK  887 (1103)
Q Consensus       814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~~l~~h~~  887 (1103)
                      ++.++....+..-++...+...+....-+     .+....+-|-. .... +-| ..|....-+....+. .....-| +
T Consensus       121 ee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTq-frg-s~gr~~~~~~~~~ek~~~~~~~~-~  196 (1265)
T KOG1920|consen  121 EELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQ-FRG-SEGRQAARQKIEKEKALEQIEQD-D  196 (1265)
T ss_pred             CcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-ccee-eec-chhhhcccccccccccccchhhc-c
Confidence            99999988644444444444444332211     11112222211 0000 001 111111111110000 0111112 2


Q ss_pred             CEEEEEEccCCCEEEEEe-----CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE----eCCe
Q 001310          888 RVTGLVFSDALNILVSSG-----GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETH  958 (1103)
Q Consensus       888 ~V~~l~~s~dg~~l~s~s-----~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~----~d~~  958 (1103)
                      .=+.+.|--||.++|+..     ..+.|+|||-+ |.+...   ..+..     +.-.+++|-|.|.++|+-    +|+.
T Consensus       197 ~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~---se~~~-----~l~~~LsWkPsgs~iA~iq~~~sd~~  267 (1265)
T KOG1920|consen  197 HKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNST---SEPVE-----GLQHSLSWKPSGSLIAAIQCKTSDSD  267 (1265)
T ss_pred             CCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcc---cCccc-----ccccceeecCCCCeEeeeeecCCCCc
Confidence            235689999999999832     23789999988 442221   11111     134589999999999982    6677


Q ss_pred             EEEEECCCceEEEEee---CCCCcCeEEEEEccCCCEEEE---EecCCcEEEEeCCCcee
Q 001310          959 LAIYEAEELTCLKQWF---PISSVPISQATFSCDCRMVFT---SFVDGTLSIHEASNLEV 1012 (1103)
Q Consensus       959 v~iwd~~~~~~~~~~~---~~h~~~v~~l~fs~dg~~l~t---~~~dg~v~vWd~~~~~~ 1012 (1103)
                      |.+|.-+ |-....+.   +....++..++|+.++..||+   ......|++|-+.+...
T Consensus       268 IvffErN-GL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW  326 (1265)
T KOG1920|consen  268 IVFFERN-GLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW  326 (1265)
T ss_pred             EEEEecC-CccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence            9999865 33222211   112344999999999999987   44555599999988644

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.38  E-value=7.3e-07  Score=62.12  Aligned_cols=38  Identities=29%  Similarity=0.455  Sum_probs=35.5

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD  363 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd  363 (1103)
                      ++++++.+|++.|++|+|+|++. ++++|+.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~-~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGN-FLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSS-EEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccc-cceeeCCCCEEEEEC
Confidence            46789999999999999999998 799999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=98.37  E-value=7.9e-05  Score=82.65  Aligned_cols=139  Identities=10%  Similarity=0.079  Sum_probs=101.0

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      ...|.--+++..++ +++.|+..|.+.+|+-.+|+.....                  ..+-.+.+..+..|++..++|+
T Consensus        33 ~~~v~lTc~dst~~-~l~~GsS~G~lyl~~R~~~~~~~~~------------------~~~~~~~~~~~~vs~~e~lvAa   93 (726)
T KOG3621|consen   33 PARVKLTCVDATEE-YLAMGSSAGSVYLYNRHTGEMRKLK------------------NEGATGITCVRSVSSVEYLVAA   93 (726)
T ss_pred             cceEEEEEeecCCc-eEEEecccceEEEEecCchhhhccc------------------ccCccceEEEEEecchhHhhhh
Confidence            34666667777788 6899999999999999888765420                  2234566777889999999999


Q ss_pred             EeCCCeEEEEEecCCCccccceEe---ccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC----ceeEEeecCCC
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHGA  486 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l---~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~~  486 (1103)
                      |+..|.|.|+-+..+........-   ..|...|++++|++|+.  .+++|...|.|..-.+.+.    ...+.+....+
T Consensus        94 gt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds  171 (726)
T KOG3621|consen   94 GTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDS  171 (726)
T ss_pred             hcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccCc
Confidence            999999999988774332221111   23678999999999999  7999999999998887772    11233334455


Q ss_pred             ceEEEEe
Q 001310          487 PVYSLCP  493 (1103)
Q Consensus       487 ~v~~~~~  493 (1103)
                      .|..+..
T Consensus       172 ~IVQlD~  178 (726)
T KOG3621|consen  172 EIVQLDY  178 (726)
T ss_pred             ceEEeec
Confidence            6666654

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=98.37  E-value=0.00045  Score=76.63  Aligned_cols=291  Identities=15%  Similarity=0.190  Sum_probs=148.5

Q ss_pred             cCCCceEEEEE--------cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          343 HPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       343 spdg~~llasg--------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      |||++++|+.-        +..+.+.|||+++++....                    ......+....|||||+++|..
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l--------------------~~~~~~~~~~~~sP~g~~~~~v   60 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPL--------------------TPPPPKLQDAKWSPDGKYIAFV   60 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEES--------------------S-EETTBSEEEE-SSSTEEEEE
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEEC--------------------cCCccccccceeecCCCeeEEE
Confidence            78998655522        1236788999988765431                    1125678889999999999998


Q ss_pred             eCCCeEEEEEecCCCccccceEecc-------c---------cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDA-------H---------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~-------h---------~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      . ++.|.+++..++...+.  +..|       -         -+.-.++-|||||+++.++ --++..|..+.+.     
T Consensus        61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~-~~d~~~v~~~~~~-----  131 (353)
T PF00930_consen   61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFL-RFDEREVPEYPLP-----  131 (353)
T ss_dssp             E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEE-EEE-TTS-EEEEE-----
T ss_pred             e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEE-EECCcCCceEEee-----
Confidence            5 56799999877643321  1222       0         1123568899999953222 2334455554421     


Q ss_pred             EEeecCCC---ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-Ee----cCCCccEEEEEEccCCCEEEEEecC
Q 001310          479 YSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DY----DAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       479 ~~~~~~~~---~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~----~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                       .......   .+..+.+ |.+.... .    .-.+.++|+.+++... ..    .....-+..+.|+++++.++..-.+
T Consensus       132 -~~~~~~~~yp~~~~~~Y-Pk~G~~n-p----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~n  204 (353)
T PF00930_consen  132 -DYSPPDSQYPEVESIRY-PKAGDPN-P----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLN  204 (353)
T ss_dssp             -EESSSTESS-EEEEEE---BTTS--------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEE
T ss_pred             -ccCCccccCCccccccc-CCCCCcC-C----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcc
Confidence             1111111   1222222 1111110 0    1135667887766532 22    2345568899999999955444433


Q ss_pred             C-CCceeEEEEeCCCCeeEEEEecccccCCce---EEEEEc-CCCCEEEE-EeCCCc--EEEEECCCCeeEEEEcCCCCC
Q 001310          551 K-EGESFLVEWNESEGAIKRTYQGLQLQHNSV---SVVHFD-TAKDQILA-AGDDHV--IKIWDMNKVQLLTTIDAGGGL  622 (1103)
Q Consensus       551 ~-~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v---~~~~~~-~~~~~l~~-~~~dg~--i~iwd~~~~~~~~~~~~~~~~  622 (1103)
                      + .....+.+.|..+++.........  ...|   ....|. +++..++. ...+|-  |++++...+... .+...  .
T Consensus       205 R~q~~~~l~~~d~~tg~~~~~~~e~~--~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~-~lT~G--~  279 (353)
T PF00930_consen  205 RDQNRLDLVLCDASTGETRVVLEETS--DGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR-QLTSG--D  279 (353)
T ss_dssp             TTSTEEEEEEEEECTTTCEEEEEEES--SSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE-ESS-S--S
T ss_pred             cCCCEEEEEEEECCCCceeEEEEecC--CcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee-ccccC--c
Confidence            3 334567788988876644443322  1222   244444 66665555 445564  555666666533 33321  2


Q ss_pred             CCCc-eEEEecCCCEEEEEECC-----CeEEEEEcCCCCeeEeccccccceeeeEEec
Q 001310          623 PENP-RICFNKNGTLLAVIANE-----NRIKILETPESNSVDAAGVLSDNLRKLSVNP  674 (1103)
Q Consensus       623 ~~v~-~v~~s~~g~~l~~~~~d-----g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~  674 (1103)
                      -.|. .+.++++++.+...+..     ..+...++..+..+..+.........+.++|
T Consensus       280 ~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Sp  337 (353)
T PF00930_consen  280 WEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSP  337 (353)
T ss_dssp             S-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-T
T ss_pred             eeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECC
Confidence            2343 47788887766544332     2444445552233444433333224455553

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10

Probab=98.35  E-value=1.3e-06  Score=82.72  Aligned_cols=133  Identities=22%  Similarity=0.284  Sum_probs=96.1

Q ss_pred             HHHHHHHhcCcCHHHHHHHhccCC-CcCCcccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHH
Q 001310           38 MKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELA  116 (1103)
Q Consensus        38 ~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~  116 (1103)
                      ...++++|++||++.|+..+.... .+...  ...+.|.|++|+|+|++..++..+|+.+.|+++.|......+.++++.
T Consensus         5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~--~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~   82 (145)
T PF10607_consen    5 RKKIRQAILNGDIDPAIEWLNENFPELLKR--NSSLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLM   82 (145)
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHcCHHHHhc--CCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            578899999999999999997642 22111  123889999999999999999999999999999766543556788888


Q ss_pred             hhcccccccc--hhccccccCCChHHHHHHHHHHHHhhhcCccccccccCCCcc-hHHHHHHHHHHHHHH
Q 001310          117 QLLTLDDIRD--HELLSKYYGDALSARKNMMLELKQIIEANPILQGKLKFPSIK-RQRLRRLINQSLNWQ  183 (1103)
Q Consensus       117 ~ll~~~~~~~--~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~Ll~qa~~~q  183 (1103)
                      .+|...+..+  ...+..+.  ....|+.+.+.+.+.+-...-         +| .+.|..++.+....+
T Consensus        83 ~lL~~~~~~~~~~s~~~~l~--~~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l  141 (145)
T PF10607_consen   83 SLLAYPDPEEPLPSPYKELL--SPERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL  141 (145)
T ss_pred             HHHHcCCcccccchHHHHHh--ChHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence            8888776554  22222221  236788888888876654222         33 456888888776544

RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].

>KOG0396 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=3.9e-06  Score=85.39  Aligned_cols=118  Identities=19%  Similarity=0.304  Sum_probs=97.2

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCC--------hhHHHHHHHhcCcCHHHHHHHhccC-CCcCCcccccchhhh
Q 001310            5 NKDLVFLILQFLNEEGFTESAHMLERESRFY--------FDMKFFEDMILDGKWEDVEQYLSSF-TKVDDNRYSTKIYFE   75 (1103)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~--------~~~~~~~~~i~~g~w~~~~~~l~~~-~~~~~~~~~~~~~~~   75 (1103)
                      +.-+-|+|..||-.+||..+|..|-++|.+.        .++...+++|++|+...|+...+.- ..+...  ...+-|.
T Consensus       115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK~--~S~lEf~  192 (389)
T KOG0396|consen  115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKKE--ESSLEFQ  192 (389)
T ss_pred             HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhc--cchhhhH
Confidence            3457899999999999999999999999975        2478889999999999998887531 111111  2226699


Q ss_pred             hhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccc
Q 001310           76 IRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDI  124 (1103)
Q Consensus        76 ~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~  124 (1103)
                      ++.|.|+||+..+++.+|+.+.++++.|....+...++....++.++..
T Consensus       193 lRlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~  241 (389)
T KOG0396|consen  193 LRLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKY  241 (389)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCccc
Confidence            9999999999999999999999999999987778888888888888644

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.25  E-value=5.2e-05  Score=78.04  Aligned_cols=250  Identities=13%  Similarity=0.103  Sum_probs=141.5

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      .+.|.+|..-|..++|||..+-|+..++.+..|+|.|+++...+..                   +..| ..+++++|.-
T Consensus       186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vss-------------------y~a~-~~~wSC~wDl  245 (463)
T KOG1645|consen  186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSS-------------------YIAY-NQIWSCCWDL  245 (463)
T ss_pred             hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeh-------------------eecc-CCceeeeecc
Confidence            4577899999999999999877889999999999999999877754                   3335 7899999998


Q ss_pred             CC-CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEE------ecCCCceEEEEEcCCCceEEEeCCC--Cce
Q 001310          407 DG-SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF------SAPCKQISVITCGDDKTIKVWDAVT--GSR  477 (1103)
Q Consensus       407 dg-~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~------s~d~~~~~l~s~~~d~~i~iwd~~~--~~~  477 (1103)
                      |. .+|..|..+|.|.|||+...+.......-.-...+|..++.      .+-|.  +++..+.+  +..|++.-  +..
T Consensus       246 de~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gg--lLv~~lt~--l~f~ei~~s~~~~  321 (463)
T KOG1645|consen  246 DERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGG--LLVFALTV--LQFYEIVFSAECL  321 (463)
T ss_pred             CCcceeEEeccCceEEEEEccCCCchHhhhhhhhccCcceeecccCccccccccc--eEEeeehh--hhhhhhhccccCC
Confidence            65 56677788999999999876533221111112234444433      23343  34444332  55666432  111


Q ss_pred             eEEee-cCCCceEEEEeeecCCccEEEEEECCCe------EEE-EEcCCCCeeEEe-cCC-Cc------cEEEEEEccCC
Q 001310          478 TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGK------IKA-WLYDSLGARVDY-DAP-GL------GCTRMAYSANG  541 (1103)
Q Consensus       478 ~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~------i~i-wd~~~~~~~~~~-~~~-~~------~i~~~~~s~dg  541 (1103)
                      ...++ +..+...++..++..+ ..|++.-.+.+      +-. -|..++..+... ..+ +.      .-..+.-.++.
T Consensus       322 p~vlele~pG~cismqy~~~sn-h~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~n  400 (463)
T KOG1645|consen  322 PCVLELEPPGICISMQYHGVSN-HLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDN  400 (463)
T ss_pred             CcccccCCCcceeeeeecCccc-eEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccc
Confidence            22121 1234444454443322 34444322110      000 011111111100 000 11      11123334566


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECC
Q 001310          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMN  608 (1103)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~  608 (1103)
                      ++++..+.   ..+.+.+||..+++.++.+....    +|..++.. -++.-++..-.|..++||..+
T Consensus       401 n~iv~~gd---~tn~lil~D~~s~evvQ~l~~~e----pv~Dicp~~~n~~syLa~LTd~~v~Iyk~e  461 (463)
T KOG1645|consen  401 NYIVVVGD---STNELILQDPHSFEVVQTLALSE----PVLDICPNDTNGSSYLALLTDDRVHIYKNE  461 (463)
T ss_pred             cEEEEecC---CcceeEEeccchhheeeecccCc----ceeecceeecCCcchhhheecceEEEEecC
Confidence            66666543   36679999999999999887643    66665543 234444444456678887654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.23  E-value=0.0022  Score=74.38  Aligned_cols=155  Identities=13%  Similarity=0.166  Sum_probs=95.4

Q ss_pred             EEEcCCCCCEEEEEeCCC------------------eEEEEEcCCceeEEEecc--CCC----CEEEEEEc----cCCC-
Q 001310          849 LAFNPHDNNVIAIGMDDS------------------TILIYNARSSEVISKLEG--HSK----RVTGLVFS----DALN-  899 (1103)
Q Consensus       849 l~~s~~d~~~lasg~~dg------------------~v~iwd~~~~~~~~~l~~--h~~----~V~~l~~s----~dg~-  899 (1103)
                      .++.+ .+..++.++.++                  .|.-+|..+|+.+..+..  |..    ......+.    -+|. 
T Consensus       222 pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~  300 (488)
T cd00216         222 PTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKP  300 (488)
T ss_pred             eeEeC-CCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCe
Confidence            45555 455777777665                  799999999998877642  211    00011111    1343 


Q ss_pred             --EEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-------------------EeCCe
Q 001310          900 --ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-------------------VHETH  958 (1103)
Q Consensus       900 --~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-------------------~~d~~  958 (1103)
                        .++.++.+|.+...|..+|+..-......           ..++.+|  ..+.+                   ..++.
T Consensus       301 ~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-----------~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~  367 (488)
T cd00216         301 VPAIVHAPKNGFFYVLDRTTGKLISARPEVE-----------QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGG  367 (488)
T ss_pred             eEEEEEECCCceEEEEECCCCcEeeEeEeec-----------cccccCC--ceEEEccccccccCcccccCCCCCCCceE
Confidence              57778889999999999998655332220           1122333  11211                   13567


Q ss_pred             EEEEECCCceEEEEeeCCC-C------cCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          959 LAIYEAEELTCLKQWFPIS-S------VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       959 v~iwd~~~~~~~~~~~~~h-~------~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      +.-.|+.+|+.+.+...+. .      .+...-.....+..|++++.||.|+.+|.++|+.+.+..
T Consensus       368 l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~  433 (488)
T cd00216         368 LAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFR  433 (488)
T ss_pred             EEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence            8888888888877643320 0      111111112356778888999999999999999998876

The alignment model contains an 8-bladed beta-propeller.

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=98.22  E-value=0.0042  Score=66.32  Aligned_cols=279  Identities=14%  Similarity=0.128  Sum_probs=136.9

Q ss_pred             EEecCCCceEEEEEcCCC--cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC-ccEEEEEECCCCCEEEEEeC
Q 001310          340 MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYS  416 (1103)
Q Consensus       340 v~~spdg~~llasgs~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~spdg~~las~~~  416 (1103)
                      =+|.+||++||.++..||  .+.+.|+.+++...                    |.... .......++|+++.++....
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~  100 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKN  100 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEET
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEEC
Confidence            368999998888887766  46677788876553                    22222 11224667899998877766


Q ss_pred             CCeEEEEEecCCCccccceEeccccccEEEEEEe--cCCCceEEEEEc----------------------CCCceEEEeC
Q 001310          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS--APCKQISVITCG----------------------DDKTIKVWDA  472 (1103)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s--~d~~~~~l~s~~----------------------~d~~i~iwd~  472 (1103)
                      ...|+--|+.+.+...   .+......+-...|.  .|+.  .++..-                      ....|.--|+
T Consensus       101 ~~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl  175 (386)
T PF14583_consen  101 GRSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDL  175 (386)
T ss_dssp             TTEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEET
T ss_pred             CCeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEEC
Confidence            6788888998875322   233344444445553  4455  333221                      1223555577


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEEEC---CCe-EEEEEcCCCCeeE-Eec--CCCccEEEEEEccCCCEEE
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGK-IKAWLYDSLGARV-DYD--APGLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~-i~iwd~~~~~~~~-~~~--~~~~~i~~~~~s~dg~~l~  545 (1103)
                      .+|+....+. -...+..+.++|.. ..+|..|-+   +.. -|||-+++..... .+.  .....+..=-|.|||..+.
T Consensus       176 ~tG~~~~v~~-~~~wlgH~~fsP~d-p~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~  253 (386)
T PF14583_consen  176 KTGERKVVFE-DTDWLGHVQFSPTD-PTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIW  253 (386)
T ss_dssp             TT--EEEEEE-ESS-EEEEEEETTE-EEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EE
T ss_pred             CCCceeEEEe-cCccccCcccCCCC-CCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEE
Confidence            7776544443 45566677777653 234444322   221 3667665433222 221  1223455566899999887


Q ss_pred             EEec-CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC----------------CcEEEEECC
Q 001310          546 SCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----------------HVIKIWDMN  608 (1103)
Q Consensus       546 ~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~  608 (1103)
                      ..+. .+..+..|.-+|+.+++.......     .....+..++||+.++-=+.|                .-|+++++.
T Consensus       254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~-----p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~  328 (386)
T PF14583_consen  254 YDSYTPGGQDFWIAGYDPDTGERRRLMEM-----PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVE  328 (386)
T ss_dssp             EEEEETTT--EEEEEE-TTT--EEEEEEE------SEEEEEE-TTSSEEEEEE-------------------EEEEEETT
T ss_pred             EEeecCCCCceEEEeeCCCCCCceEEEeC-----CceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccc
Confidence            6544 334466788899998876443332     233455567888877662222                256778888


Q ss_pred             CCeeEEEEcCC--------CCCCCCceEEEecCCCEEEEEEC-CCeEEEEE
Q 001310          609 KVQLLTTIDAG--------GGLPENPRICFNKNGTLLAVIAN-ENRIKILE  650 (1103)
Q Consensus       609 ~~~~~~~~~~~--------~~~~~v~~v~~s~~g~~l~~~~~-dg~i~iw~  650 (1103)
                      .+.........        .....-....|+|||++++..++ .|...||-
T Consensus       329 ~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~  379 (386)
T PF14583_consen  329 AGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYL  379 (386)
T ss_dssp             TTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEE
T ss_pred             cCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEE
Confidence            77654222110        01112357899999998877665 56655553

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.17  E-value=7.8e-05  Score=83.79  Aligned_cols=188  Identities=12%  Similarity=0.102  Sum_probs=129.1

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeee
Q 001310          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC  923 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~  923 (1103)
                      ..+.|++++   +++++.|+.+|.|++++... .. .+...|+..      ..+|.+++||+.||+|.|-.+.+.+....
T Consensus        40 D~is~~av~---~~~~~~GtH~g~v~~~~~~~-~~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~~  108 (846)
T KOG2066|consen   40 DAISCCAVH---DKFFALGTHRGAVYLTTCQG-NP-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEITQ  108 (846)
T ss_pred             hHHHHHHhh---cceeeeccccceEEEEecCC-cc-ccccccccc------ccCCceEEEecCCCcEEEeeccCCcccee
Confidence            456777775   47999999999999999773 33 444446543      56799999999999999999988664332


Q ss_pred             eeeecCCCcccCCCCceEEEEcCC-----CCEEEEEeCCeEEEEECCC-ceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310          924 RSLQTPDGVMTLAPSETHIQFHKD-----QTRFLLVHETHLAIYEAEE-LTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       924 ~~~~~~~~~~~~~~~v~~l~fs~d-----g~~l~~~~d~~v~iwd~~~-~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      ..++         .++.+++++||     .+.+++|+...+.++.-.= |...........++|.++.|.  |.++|=++
T Consensus       109 ~df~---------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan  177 (846)
T KOG2066|consen  109 YDFK---------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN  177 (846)
T ss_pred             EecC---------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec
Confidence            2222         26889999998     5666775443377776431 111111233347899999986  67888887


Q ss_pred             cCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310          998 VDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus       998 ~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                      ++| |+|||+.+++.+..+.+..-.+               ....++-.+.|.++  ..|+.| ...+|+|..+.
T Consensus       178 d~G-v~vyd~~~~~~l~~i~~p~~~~---------------R~e~fpphl~W~~~--~~LVIG-W~d~v~i~~I~  233 (846)
T KOG2066|consen  178 DDG-VKVYDTPTRQRLTNIPPPSQSV---------------RPELFPPHLHWQDE--DRLVIG-WGDSVKICSIK  233 (846)
T ss_pred             CCC-cEEEeccccceeeccCCCCCCC---------------CcccCCCceEecCC--CeEEEe-cCCeEEEEEEe
Confidence            666 9999999999998888555222               12244556777765  566654 56678888876

>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]

Probab=98.13  E-value=4.9e-05  Score=86.28  Aligned_cols=186  Identities=14%  Similarity=0.117  Sum_probs=141.9

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  536 (1103)
                      .++.|+....+..+|+.+++..+......+.|.-++.    +++++.+|...|+|.+-|..+.+...++..|.+.+.  .
T Consensus       149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~----Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--D  222 (1118)
T KOG1275|consen  149 TLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY----NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--D  222 (1118)
T ss_pred             ceeecchhhheeeeecccceeeeeeeccCCceEEEEe----cCcEEEeecccceEEeecCCcCceeeeeecccccee--e
Confidence            5778888888999999999988877666656666654    668999999999999999999999999999999885  4


Q ss_pred             EccCCCEEEEEecCCC-----CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCC-
Q 001310          537 YSANGRRLFSCGTSKE-----GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNK-  609 (1103)
Q Consensus       537 ~s~dg~~l~~~~~~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-  609 (1103)
                      |+-.|+.|++|+.+..     .|..|.+||+++.+.+..+.-+.   ++ .-+.|.|. ...+++++..|...+-|..+ 
T Consensus       223 fDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~---~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~l  298 (1118)
T KOG1275|consen  223 FDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPY---GP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATL  298 (1118)
T ss_pred             eeccCCeEEEeecccccccccccchhhhhhhhhhhccCCccccc---Cc-hhhhhcccccceEEEEecccceeecccccc
Confidence            5667899999987542     36779999999888777666554   22 44567776 35677788899999988332 


Q ss_pred             Cee-EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          610 VQL-LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       610 ~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      +.+ ......+...+.+..+.++++|+.++.|..+|.|.+|.-.
T Consensus       299 sNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~~  342 (1118)
T KOG1275|consen  299 SNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWADR  342 (1118)
T ss_pred             CCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecCC
Confidence            111 1222222223458899999999999999999999999843

>KOG2695 consensus WD40 repeat protein [General function prediction only]

Probab=98.10  E-value=7.8e-06  Score=82.08  Aligned_cols=142  Identities=15%  Similarity=0.184  Sum_probs=104.1

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      ..+.+. .++.|.+++|...+. ++..|...|.|...|+..+.+=.     .|         ... ---|...|+++..-
T Consensus       245 ~~qsf~-sksDVfAlQf~~s~n-Lv~~GcRngeI~~iDLR~rnqG~-----~~---------~a~-rlyh~Ssvtslq~L  307 (425)
T KOG2695|consen  245 HQQSFQ-SKSDVFALQFAGSDN-LVFNGCRNGEIFVIDLRCRNQGN-----GW---------CAQ-RLYHDSSVTSLQIL  307 (425)
T ss_pred             cccccc-cchhHHHHHhcccCC-eeEecccCCcEEEEEeeecccCC-----Cc---------ceE-EEEcCcchhhhhhh
Confidence            334444 456899999999887 89999999999999997651110     00         000 11288999999988


Q ss_pred             C-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          406 P-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       406 p-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      . ++.+|.+.+.+|.|++||..--++-+......||...-..+-+.-+...-.+++++.|...|||.+..|..+.++...
T Consensus       308 q~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~  387 (425)
T KOG2695|consen  308 QFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFP  387 (425)
T ss_pred             ccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCC
Confidence            7 889999999999999999987666444557788876554444432222227889999999999999999999887643

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=98.09  E-value=0.0046  Score=71.72  Aligned_cols=138  Identities=12%  Similarity=0.087  Sum_probs=79.7

Q ss_pred             cEEEEEECCCeEEEEEcCCCCeeEEecCCCc------cE--EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGL------GC--TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~------~i--~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      ..++.++.++.+.-.|..+++..........      .+  ..+++. ++..++.+..    ++.|+.+|.++|+.+-.+
T Consensus        62 g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~----~g~v~AlD~~TG~~~W~~  136 (488)
T cd00216          62 GDMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTF----DGRLVALDAETGKQVWKF  136 (488)
T ss_pred             CEEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecC----CCeEEEEECCCCCEeeee
Confidence            3566777788888888888887766544332      00  011111 2245555543    567999999999988777


Q ss_pred             eccccc--CCceE-EEEEcCCCCEEEEEe---------CCCcEEEEECCCCeeEEEEcCCCCC-----------------
Q 001310          572 QGLQLQ--HNSVS-VVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGL-----------------  622 (1103)
Q Consensus       572 ~~~~~~--~~~v~-~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~-----------------  622 (1103)
                      ......  ...+. ...+.  +..++.++         .+|.++-+|..+|+.+-........                 
T Consensus       137 ~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  214 (488)
T cd00216         137 GNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPG  214 (488)
T ss_pred             cCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCC
Confidence            653310  00011 11121  24455554         3678999999999988776542110                 


Q ss_pred             -CCC-ceEEEecCCCEEEEEECCC
Q 001310          623 -PEN-PRICFNKNGTLLAVIANEN  644 (1103)
Q Consensus       623 -~~v-~~v~~s~~g~~l~~~~~dg  644 (1103)
                       ..+ ...++.+.+..+++++.++
T Consensus       215 g~~vw~~pa~d~~~g~V~vg~~~g  238 (488)
T cd00216         215 GGTSWASPTYDPKTNLVYVGTGNG  238 (488)
T ss_pred             CCCccCCeeEeCCCCEEEEECCCC
Confidence             001 1345555567777777665

The alignment model contains an 8-bladed beta-propeller.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.07  E-value=0.00072  Score=76.93  Aligned_cols=202  Identities=11%  Similarity=0.115  Sum_probs=129.9

Q ss_pred             EecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCcc-EEEEEECCCCCEEEEEeCCC-
Q 001310          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWSPDGSLLGVAYSKH-  418 (1103)
Q Consensus       341 ~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~~spdg~~las~~~d~-  418 (1103)
                      +|++.+. .+|.|+.+|.|.+.+-.- +.++.                   +..+... |..+-.-.+..+|++.+.|+ 
T Consensus        30 c~~s~~~-~vvigt~~G~V~~Ln~s~-~~~~~-------------------fqa~~~siv~~L~~~~~~~~L~sv~Ed~~   88 (933)
T KOG2114|consen   30 CCSSSTG-SVVIGTADGRVVILNSSF-QLIRG-------------------FQAYEQSIVQFLYILNKQNFLFSVGEDEQ   88 (933)
T ss_pred             EEcCCCc-eEEEeeccccEEEecccc-eeeeh-------------------heecchhhhhHhhcccCceEEEEEeecCC
Confidence            4677776 689999999988887321 11121                   3345555 44444444446777776554 


Q ss_pred             ----eEEEEEecCCCccc---cc--eEecc-----ccccEEEEEEecCCCceEEEEEcCCCceEEEeCC----CCceeEE
Q 001310          419 ----IVQLYAYHGGSDAR---QQ--LEIDA-----HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV----TGSRTYS  480 (1103)
Q Consensus       419 ----~i~iwd~~~~~~~~---~~--~~l~~-----h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~----~~~~~~~  480 (1103)
                          .++||+++.-+.-.   ..  ..+.+     ...++.+++.+.+-+  .+|.|-.+|.|..+.-+    .|....-
T Consensus        89 ~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~--~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~  166 (933)
T KOG2114|consen   89 GNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLK--TIVCGFTNGLVICYKGDILRDRGSRQDY  166 (933)
T ss_pred             CCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcccc--EEEEEecCcEEEEEcCcchhccccceee
Confidence                59999987432111   00  01222     345789999999977  79999999999888421    2222222


Q ss_pred             eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      ......+|+.+++..  ++..++.+..-..|.+|.+....... ....++....|.++++....+++++     ...+++
T Consensus       167 ~~~~~~pITgL~~~~--d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-----~e~l~f  239 (933)
T KOG2114|consen  167 SHRGKEPITGLALRS--DGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-----SEFLYF  239 (933)
T ss_pred             eccCCCCceeeEEec--CCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-----CceEEE
Confidence            334567899999854  44444455556678999988665333 4777888899999988777677665     345999


Q ss_pred             EeCCCCeeEEEEe
Q 001310          560 WNESEGAIKRTYQ  572 (1103)
Q Consensus       560 wd~~~~~~~~~~~  572 (1103)
                      |+......--.+.
T Consensus       240 Y~sd~~~~cfaf~  252 (933)
T KOG2114|consen  240 YDSDGRGPCFAFE  252 (933)
T ss_pred             EcCCCcceeeeec
Confidence            9987655555555

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.04  E-value=0.00041  Score=78.25  Aligned_cols=186  Identities=12%  Similarity=0.131  Sum_probs=124.6

Q ss_pred             cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1103)
Q Consensus       736 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  815 (1103)
                      .+.+.+++  ++.++.|+.+|.+++++.+....                  +..          .|...      ..+|.
T Consensus        41 ~is~~av~--~~~~~~GtH~g~v~~~~~~~~~~------------------~~~----------~~s~~------~~~Ge   84 (846)
T KOG2066|consen   41 AISCCAVH--DKFFALGTHRGAVYLTTCQGNPK------------------TNF----------DHSSS------ILEGE   84 (846)
T ss_pred             HHHHHHhh--cceeeeccccceEEEEecCCccc------------------ccc----------ccccc------ccCCc
Confidence            34444443  56788899999999987654310                  000          02221      56899


Q ss_pred             EEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCC----CCCEEEEEeCCCeEEEEEcCC-ce-eEEEeccCCCC
Q 001310          816 YLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH----DNNVIAIGMDDSTILIYNARS-SE-VISKLEGHSKR  888 (1103)
Q Consensus       816 ~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~-~~-~~~~l~~h~~~  888 (1103)
                      ++++++ ||+|.|-.+-+.+...++. ...++.+++++|+    ..+.+++|+..| +.++.-.= |. ....+..-.|+
T Consensus        85 y~asCS~DGkv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~  162 (846)
T KOG2066|consen   85 YVASCSDDGKVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGP  162 (846)
T ss_pred             eEEEecCCCcEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccc
Confidence            999998 7999999988887776665 5578999999993    256888899888 77775331 11 11134556789


Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001310          889 VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  965 (1103)
Q Consensus       889 V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~  965 (1103)
                      |.++.|.  |+++|-++.+| |+++|+..++....  ++.+........-...+.|.++.+ |++|-..+|.|..+.
T Consensus       163 I~~i~W~--g~lIAWand~G-v~vyd~~~~~~l~~--i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~  233 (846)
T KOG2066|consen  163 IHSIKWR--GNLIAWANDDG-VKVYDTPTRQRLTN--IPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK  233 (846)
T ss_pred             eEEEEec--CcEEEEecCCC-cEEEeccccceeec--cCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence            9999995  88999999998 99999998775442  222222211112345677777655 556655677777776

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=98.01  E-value=0.0024  Score=65.12  Aligned_cols=197  Identities=9%  Similarity=0.094  Sum_probs=113.6

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +.|.+-.++++.++|.|+.++|+|+....+.|...+. +|+.+++..                 +.+ -+..-.|++..+
T Consensus        15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~-----------------l~g-~~D~EgI~y~g~   75 (248)
T PF06977_consen   15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIP-----------------LDG-FGDYEGITYLGN   75 (248)
T ss_dssp             EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE------------------SS--SSEEEEEE-ST
T ss_pred             eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEe-----------------CCC-CCCceeEEEECC
Confidence            5667777789999999997778999999999999996 477776533                 333 356788999988


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccc-----eEec---cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC---Cc
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQ-----LEID---AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GS  476 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~-----~~l~---~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~  476 (1103)
                      +.++++.-.++.+.+.++.........     ..+.   .+...+-.++|.+.++.  |+.+-...-..++.+..   +.
T Consensus        76 ~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~--L~v~kE~~P~~l~~~~~~~~~~  153 (248)
T PF06977_consen   76 GRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNR--LFVAKERKPKRLYEVNGFPGGF  153 (248)
T ss_dssp             TEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTE--EEEEEESSSEEEEEEESTT-SS
T ss_pred             CEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCE--EEEEeCCCChhhEEEccccCcc
Confidence            888887767899999998443211111     1111   24456899999999884  44455555555665443   22


Q ss_pred             eeEEe--------ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC---------ccEEEEEEcc
Q 001310          477 RTYSF--------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSA  539 (1103)
Q Consensus       477 ~~~~~--------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~  539 (1103)
                      .+...        ......+.++++++. .+++++....+..|..+| ..++....+....         .....|+|.+
T Consensus       154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p~-t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~  231 (248)
T PF06977_consen  154 DLFVSDDQDLDDDKLFVRDLSGLSYDPR-TGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDP  231 (248)
T ss_dssp             --EEEE-HHHH-HT--SS---EEEEETT-TTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-T
T ss_pred             ceeeccccccccccceeccccceEEcCC-CCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECC
Confidence            22111        123345788888865 567888888888899998 4444444333222         2467899999


Q ss_pred             CCCEEEEE
Q 001310          540 NGRRLFSC  547 (1103)
Q Consensus       540 dg~~l~~~  547 (1103)
                      +|+..++.
T Consensus       232 ~G~LYIvs  239 (248)
T PF06977_consen  232 DGNLYIVS  239 (248)
T ss_dssp             T--EEEEE
T ss_pred             CCCEEEEc
Confidence            99777665

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.01  E-value=0.00046  Score=78.42  Aligned_cols=203  Identities=11%  Similarity=0.104  Sum_probs=136.0

Q ss_pred             EEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCC-eeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCc----
Q 001310          808 FALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDS-----TILIYNARSS----  876 (1103)
Q Consensus       808 l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~----  876 (1103)
                      -++++.+..++.|+ +|.|.+.+-. .+.++.++.+... |+.+-... +..+|++.+.|+     .++||+++.-    
T Consensus        29 sc~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~  106 (933)
T KOG2114|consen   29 SCCSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNN  106 (933)
T ss_pred             eEEcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCC
Confidence            35678888888887 7888777643 4555777777766 44454443 556888877765     5899998742    


Q ss_pred             --eeE--EEecc-----CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310          877 --EVI--SKLEG-----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       877 --~~~--~~l~~-----h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  947 (1103)
                        .++  ..+..     ...++.+++.|.+-+.+|.|-.+|.|..+.-+--..+..+..-...+.    .+|+.++|..|
T Consensus       107 sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~----~pITgL~~~~d  182 (933)
T KOG2114|consen  107 SPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGK----EPITGLALRSD  182 (933)
T ss_pred             CcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCC----CCceeeEEecC
Confidence              223  12222     346788999999999999999999998885442111111111122222    37999999999


Q ss_pred             CCE-EEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          948 QTR-FLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       948 g~~-l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ++. +.++.-..|.+|.+............|+..+.+..|++-...+++++ +..+.+|+.+.......+.
T Consensus       183 ~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~  252 (933)
T KOG2114|consen  183 GKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE  252 (933)
T ss_pred             CceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence            988 44567778999999844423334667788899999987655455554 4579999988555443333

>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]

Probab=97.99  E-value=0.00097  Score=74.34  Aligned_cols=199  Identities=12%  Similarity=0.117  Sum_probs=119.0

Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceee
Q 001310          625 NPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISV  704 (1103)
Q Consensus       625 v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~  704 (1103)
                      +.--+++..+++++.|+..|.+++|+...+.......                                           
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~-------------------------------------------   72 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKN-------------------------------------------   72 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccc-------------------------------------------
Confidence            4455667789999999999999999877663321110                                           


Q ss_pred             ccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeec
Q 001310          705 EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  784 (1103)
Q Consensus       705 ~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  784 (1103)
                                                .+..+.+....++++..++++++..|.|.++.++.... +..            
T Consensus        73 --------------------------~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p-~~~------------  113 (726)
T KOG3621|consen   73 --------------------------EGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELP-RDL------------  113 (726)
T ss_pred             --------------------------cCccceEEEEEecchhHhhhhhcCCceEEeehhhccCC-Ccc------------
Confidence                                      01223455667788888888899999999988765211 100            


Q ss_pred             CCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCc----eeeEEecCCCCCeeEEEEcCCCCCEE
Q 001310          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTF----KTILTIMPPSPTATSLAFNPHDNNVI  859 (1103)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~----~~~~~~~~~~~~i~~l~~s~~d~~~l  859 (1103)
                            ...... ...|...|++++|++|+..+.+|. .|+|.+-.+.+.    -..+.+......|..+.+..  +.+|
T Consensus       114 ------~~~t~~-d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q--~~LL  184 (726)
T KOG3621|consen  114 ------DYVTPC-DKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQ--SYLL  184 (726)
T ss_pred             ------eeeccc-cccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeeccc--ceeh
Confidence                  011111 113789999999999999999998 499888887762    11233444567787887763  4455


Q ss_pred             EEEeCCCeEEEEEcCCce--eEEEeccCCCCEEEEEEccC----CCEEEEEeCCCeEEEEEcCC
Q 001310          860 AIGMDDSTILIYNARSSE--VISKLEGHSKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       860 asg~~dg~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~d----g~~l~s~s~dg~I~iwd~~~  917 (1103)
                      ++...-  -.+++.+.++  .+..-....-.-...+|-|.    .+-.+.++.-| .++|..+-
T Consensus       185 VStl~r--~~Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~IycaRPG-~RlWead~  245 (726)
T KOG3621|consen  185 VSTLTR--CILCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCARPG-LRLWEADF  245 (726)
T ss_pred             Hhhhhh--hheeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEecCC-CceEEeec
Confidence            443332  2344444332  11111111101223344443    34455566666 78887763

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.95  E-value=0.01  Score=63.46  Aligned_cols=229  Identities=12%  Similarity=0.050  Sum_probs=113.9

Q ss_pred             EEECCCCCEEEEEeC-C--CeEEEEEecCCCccccceEecccc-ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310          402 VVWSPDGSLLGVAYS-K--HIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1103)
Q Consensus       402 ~~~spdg~~las~~~-d--~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  477 (1103)
                      =+|.+||+.|+.++. +  ..+.+-|+.+++..+    |..+. .......++|+++  .++-......|+--|+++.+.
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q----LTdg~g~~~~g~~~s~~~~--~~~Yv~~~~~l~~vdL~T~e~  114 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ----LTDGPGDNTFGGFLSPDDR--ALYYVKNGRSLRRVDLDTLEE  114 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-------SS-B-TTT-EE-TTSS--EEEEEETTTEEEEEETTT--E
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEE----CccCCCCCccceEEecCCC--eEEEEECCCeEEEEECCcCcE
Confidence            367899988887665 4  467888888876443    33322 2222466778888  454444556888999999887


Q ss_pred             eEEeecCCCceEEEEeeecCCccEEEEEEC----------------------CCeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISV----------------------DGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1103)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~----------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~  535 (1103)
                      ...+......+-...+..+.++..++..-.                      ...|...|+.+++....+. ....+..+
T Consensus       115 ~~vy~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~-~~~wlgH~  193 (386)
T PF14583_consen  115 RVVYEVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFE-DTDWLGHV  193 (386)
T ss_dssp             EEEEE--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEE-ESS-EEEE
T ss_pred             EEEEECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEe-cCccccCc
Confidence            666666677776666766667666554321                      1234445666655544443 44567788


Q ss_pred             EEccCCC-EEEEEecCCCC--ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-----CCCcEEEEEC
Q 001310          536 AYSANGR-RLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-----DDHVIKIWDM  607 (1103)
Q Consensus       536 ~~s~dg~-~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-----~dg~i~iwd~  607 (1103)
                      .|+|... .|+.|....-.  +.+|.+.+.. |...+.+..+. ....+..=.|.|||..+..-+     .+..|.-+|+
T Consensus       194 ~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~d-g~~~~~v~~~~-~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~  271 (386)
T PF14583_consen  194 QFSPTDPTLIMFCHEGPWDLVDQRIWTINTD-GSNVKKVHRRM-EGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGYDP  271 (386)
T ss_dssp             EEETTEEEEEEEEE-S-TTTSS-SEEEEETT-S---EESS----TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE-T
T ss_pred             ccCCCCCCEEEEeccCCcceeceEEEEEEcC-CCcceeeecCC-CCcccccccccCCCCEEEEEeecCCCCceEEEeeCC
Confidence            8999544 45555532211  2235444533 33334443333 123455567899998876632     3446777888


Q ss_pred             CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1103)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d  643 (1103)
                      .+++.......+    .....-.++||++++-=+.|
T Consensus       272 ~t~~~~~~~~~p----~~~H~~ss~Dg~L~vGDG~d  303 (386)
T PF14583_consen  272 DTGERRRLMEMP----WCSHFMSSPDGKLFVGDGGD  303 (386)
T ss_dssp             TT--EEEEEEE-----SEEEEEE-TTSSEEEEEE--
T ss_pred             CCCCceEEEeCC----ceeeeEEcCCCCEEEecCCC
Confidence            887665433322    23455567889887765544

>smart00668 CTLH C-terminal to LisH motif

Probab=97.95  E-value=5.1e-06  Score=63.90  Aligned_cols=53  Identities=34%  Similarity=0.595  Sum_probs=42.0

Q ss_pred             hHHHHHHHhcCcCHHHHHHHhccCCCcCCcccccchhhhhhhhhhhhhhcCCCH
Q 001310           37 DMKFFEDMILDGKWEDVEQYLSSFTKVDDNRYSTKIYFEIRKQNFFEALDGHDI   90 (1103)
Q Consensus        37 ~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~~~~q~~~Ell~~~~~   90 (1103)
                      ++..++++|++|+|+.|++.+...........+ .+.|.|++|+|+||++.++.
T Consensus         4 ~~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~-~l~f~L~~q~~lell~~~~~   56 (58)
T smart00668        4 ERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGKL   56 (58)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHcCHHHhccCC-CchhHHHHHHHHHHHHcCCc
Confidence            467899999999999999999876332222222 48999999999999998764

Alpha-helical motif of unknown function.

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.95  E-value=0.018  Score=65.89  Aligned_cols=253  Identities=14%  Similarity=0.083  Sum_probs=138.4

Q ss_pred             CceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .+...++||||++++.+-+..|    .+++.|+++|+.+.. .+                 .  ......++|++|++.|
T Consensus       125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~i-----------------~--~~~~~~~~W~~d~~~~  184 (414)
T PF02897_consen  125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-GI-----------------E--NPKFSSVSWSDDGKGF  184 (414)
T ss_dssp             EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-EE-----------------E--EEESEEEEECTTSSEE
T ss_pred             EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-cc-----------------c--ccccceEEEeCCCCEE
Confidence            3446789999997665544444    599999999976643 11                 0  1112239999998887


Q ss_pred             EEEeCC-----------CeEEEEEecCCCccccceEecccccc--EEEEEEecCCCceEEEEEcCC--CceEEEeCCCC-
Q 001310          412 GVAYSK-----------HIVQLYAYHGGSDARQQLEIDAHVGN--VNDLAFSAPCKQISVITCGDD--KTIKVWDAVTG-  475 (1103)
Q Consensus       412 as~~~d-----------~~i~iwd~~~~~~~~~~~~l~~h~~~--v~~~~~s~d~~~~~l~s~~~d--~~i~iwd~~~~-  475 (1103)
                      .....+           ..|+.|.+.++..-. ...+.+....  ...+..++|++.+++.+.+..  ..+.+-|+..+ 
T Consensus       185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d-~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~  263 (414)
T PF02897_consen  185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSED-ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG  263 (414)
T ss_dssp             EEEECSTTTSS-CCGCCEEEEEEETTS-GGG--EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred             EEEEeCcccccccCCCCcEEEEEECCCChHhC-eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence            766432           237777776654221 1234443332  568889999996333333322  35778888775 


Q ss_pred             ---ceeEEeecCCCceEEEEeeecCCccEEEEEE---CCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccCCCEEEE
Q 001310          476 ---SRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSANGRRLFS  546 (1103)
Q Consensus       476 ---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1103)
                         .....+......+....-+.  ++.+++...   ..+.|...++.....   ...+..+...+.-..+...+.+|+.
T Consensus       264 ~~~~~~~~l~~~~~~~~~~v~~~--~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl  341 (414)
T PF02897_consen  264 SPDAKPKLLSPREDGVEYYVDHH--GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVL  341 (414)
T ss_dssp             TSS-SEEEEEESSSS-EEEEEEE--TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEE
T ss_pred             CCcCCcEEEeCCCCceEEEEEcc--CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEE
Confidence               23344433333333322221  333443332   335677777777653   2244444443333334445666665


Q ss_pred             EecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE--Ee--CCCcEEEEECCCCeeEE
Q 001310          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA--AG--DDHVIKIWDMNKVQLLT  614 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~~  614 (1103)
                      ... .++...|+++++..+..........  .+.|..+...++++.+..  .|  .-++++.||+.+++...
T Consensus       342 ~~~-~~~~~~l~v~~~~~~~~~~~~~~p~--~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~~  410 (414)
T PF02897_consen  342 SYR-ENGSSRLRVYDLDDGKESREIPLPE--AGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELTL  410 (414)
T ss_dssp             EEE-ETTEEEEEEEETT-TEEEEEEESSS--SSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEEE
T ss_pred             EEE-ECCccEEEEEECCCCcEEeeecCCc--ceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEEE
Confidence            543 3457789999998455555555444  355666666666665544  22  34678888998887643

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.91  E-value=0.00069  Score=74.53  Aligned_cols=115  Identities=15%  Similarity=0.192  Sum_probs=83.3

Q ss_pred             CCCeeEEEEecC-CCEEEEEc-----CCe----EEEEEcCCceeeEE---ecCCCCCeeEEEEcCCCCCEEEEEeCCCeE
Q 001310          802 QEAVPCFALSKN-DAYLFSAS-----GGV----ISLYIVMTFKTILT---IMPPSPTATSLAFNPHDNNVIAIGMDDSTI  868 (1103)
Q Consensus       802 ~~~v~~l~~s~d-~~~l~~~~-----dg~----i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~d~~~lasg~~dg~v  868 (1103)
                      .....++.||.. ...+.+..     +|.    ..+|++...+..+.   -......+.+.+++| +...|+.|+.||+|
T Consensus       205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp-~E~kLvlGC~DgSi  283 (545)
T PF11768_consen  205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSP-SEDKLVLGCEDGSI  283 (545)
T ss_pred             cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCc-ccceEEEEecCCeE
Confidence            344566777763 33443332     232    56777765543221   123667899999999 88999999999999


Q ss_pred             EEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc
Q 001310          869 LIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1103)
Q Consensus       869 ~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~  919 (1103)
                      .+||...+...  +..+.-..+.++|+|+|..+++|+..|.+.+||+.-..
T Consensus       284 iLyD~~~~~t~--~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALsp  332 (545)
T PF11768_consen  284 ILYDTTRGVTL--LAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALSP  332 (545)
T ss_pred             EEEEcCCCeee--eeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecCc
Confidence            99998876432  33345567889999999999999999999999998644

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.91  E-value=0.00078  Score=75.10  Aligned_cols=198  Identities=18%  Similarity=0.156  Sum_probs=119.2

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCC---CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNV---GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN  400 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d---~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~  400 (1103)
                      ....+.+..-...+..-+|+|+++.+....-..   ..+.++|+++++.....+                 +   .+.-.
T Consensus       182 g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-----------------~---~g~~~  241 (425)
T COG0823         182 GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-----------------F---NGNNG  241 (425)
T ss_pred             CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------c---CCccC
Confidence            445566666666888889999998754443332   359999999987665422                 2   23334


Q ss_pred             EEEECCCCCEEEEEe-CCCe--EEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--eEEEeCCCC
Q 001310          401 RVVWSPDGSLLGVAY-SKHI--VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTG  475 (1103)
Q Consensus       401 ~~~~spdg~~las~~-~d~~--i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~  475 (1103)
                      .-+|||||++||.+. .||.  |.+.|+.++.. .   .+..-.+.-+.=.|+|||+. ++++.+..|.  |.+.|++.+
T Consensus       242 ~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~-~---~Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~  316 (425)
T COG0823         242 APAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNL-P---RLTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGS  316 (425)
T ss_pred             CccCCCCCCEEEEEECCCCCccEEEEcCCCCcc-e---ecccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCC
Confidence            568999999998774 4554  67778777652 2   23333333336789999997 3444555554  566676655


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECC-Ce--EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      .. ..+......-.  ...+++||.+++..+.. |.  |.+.|+.+... ..............+.++|+.+...+..
T Consensus       317 ~~-~riT~~~~~~~--~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~~  390 (425)
T COG0823         317 QV-TRLTFSGGGNS--NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSGQ  390 (425)
T ss_pred             ce-eEeeccCCCCc--CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEeccC
Confidence            54 33322221111  33346788888877743 44  55555555443 2222223334456788899988876653

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.86  E-value=0.055  Score=63.04  Aligned_cols=149  Identities=9%  Similarity=0.096  Sum_probs=90.1

Q ss_pred             eEEEEEcCCceeEEEeccCCCCEEE---------EEEccCCC---EEEEEeCCCeEEEEEcCCCceeeee------ee--
Q 001310          867 TILIYNARSSEVISKLEGHSKRVTG---------LVFSDALN---ILVSSGGDAQIFVWDVDGWGIQTCR------SL--  926 (1103)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~---------l~~s~dg~---~l~s~s~dg~I~iwd~~~~~~~~~~------~~--  926 (1103)
                      .|.-.|++||+....++.....+..         +.+-.+|+   .++.+..+|.+++.|-.+|+.....      ..  
T Consensus       272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~  351 (527)
T TIGR03075       272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT  351 (527)
T ss_pred             eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence            6777899999988777652211111         22224665   7889999999999999999864210      00  


Q ss_pred             --ecCCCcc------------cC------C---CC--ceEEEEcCCCCEEEE-Ee-------------------------
Q 001310          927 --QTPDGVM------------TL------A---PS--ETHIQFHKDQTRFLL-VH-------------------------  955 (1103)
Q Consensus       927 --~~~~~~~------------~~------~---~~--v~~l~fs~dg~~l~~-~~-------------------------  955 (1103)
                        ....+..            ..      .   +.  =..++++|+..++.+ ..                         
T Consensus       352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~  431 (527)
T TIGR03075       352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT  431 (527)
T ss_pred             ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence              0000000            00      0   00  022667776666654 11                         


Q ss_pred             --------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       956 --------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                              -+.|.-+|+.+|+.+.+....  .+...-.....+..+++++.||.++.+|.+||+.+.++.
T Consensus       432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~--~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~  499 (527)
T TIGR03075       432 IKPPPDDHMGSLIAWDPITGKIVWEHKED--FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFK  499 (527)
T ss_pred             cCCCCCCCceeEEEEeCCCCceeeEecCC--CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence                    135888899999887764322  121111122355567778889999999999999998777

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=97.85  E-value=0.03  Score=62.16  Aligned_cols=94  Identities=14%  Similarity=0.170  Sum_probs=69.0

Q ss_pred             EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001310          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  636 (1103)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~  636 (1103)
                      -.+|+....+..+.-...-.....+.+++++|+...++.|+.||+|.+||...+..... ..   .-....++|+|+|..
T Consensus       238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka---~~~P~~iaWHp~gai  313 (545)
T PF11768_consen  238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA---EFIPTLIAWHPDGAI  313 (545)
T ss_pred             EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee---cccceEEEEcCCCcE
Confidence            34566655433222111111236899999999999999999999999999887644433 21   123578999999999


Q ss_pred             EEEEECCCeEEEEEcCCC
Q 001310          637 LAVIANENRIKILETPES  654 (1103)
Q Consensus       637 l~~~~~dg~i~iw~~~~~  654 (1103)
                      +++|+..|.+.+||..-.
T Consensus       314 ~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  314 FVVGSEQGELQCFDMALS  331 (545)
T ss_pred             EEEEcCCceEEEEEeecC
Confidence            999999999999998754

>PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions

Probab=97.82  E-value=2.9e-05  Score=47.66  Aligned_cols=27  Identities=33%  Similarity=0.642  Sum_probs=24.6

Q ss_pred             HHHHHHHHHhhhhcChhHHHHHHHHhc
Q 001310            6 KDLVFLILQFLNEEGFTESAHMLERES   32 (1103)
Q Consensus         6 ~e~~rli~q~L~~~g~~~s~~~L~~Es   32 (1103)
                      +++.+||+.||.+.||.+||++|.+||
T Consensus         1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea   27 (27)
T PF08513_consen    1 EELNQLIYDYLVENGYKETAKAFAKEA   27 (27)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred             CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence            578999999999999999999999996

The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.82  E-value=0.0046  Score=68.34  Aligned_cols=255  Identities=14%  Similarity=0.129  Sum_probs=135.5

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeee------ee------------eeeEeeccccc------cceeeee
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF------IR------------NFKVWDIGACS------MLFKTAL  391 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~------~~------------~~~~~~~~~~~------~~~~~~~  391 (1103)
                      .|+++.|+++... ||+|...|.|.||.+...+.-.      ..            .-.+-|++...      ......+
T Consensus         3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l   81 (395)
T PF08596_consen    3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL   81 (395)
T ss_dssp             -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred             eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence            5889999999763 7889999999999875432221      00            12233443211      1233445


Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEecc------ccccEEEEEEec-----CC-CceEEE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA------HVGNVNDLAFSA-----PC-KQISVI  459 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~------h~~~v~~~~~s~-----d~-~~~~l~  459 (1103)
                      +....++|++++.| |=-++|.|+.+|.+.|.|+.+...+.. ..+..      ....|+++.|+-     |+ ..+.++
T Consensus        82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~-~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYN-ENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEE-EEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEee-ccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            66678999999998 667999999999999999977654432 12222      334688888862     22 225788


Q ss_pred             EEcCCCceEEEeCC--C-Ccee----EEeecCCCceEEEEeeecCCc-------------------cEEEEEECCCeEEE
Q 001310          460 TCGDDKTIKVWDAV--T-GSRT----YSFEGHGAPVYSLCPHAKENI-------------------HFIFSISVDGKIKA  513 (1103)
Q Consensus       460 s~~~d~~i~iwd~~--~-~~~~----~~~~~~~~~v~~~~~~~~~~~-------------------~~l~s~~~dg~i~i  513 (1103)
                      .|...|.+.+|.+.  . +.-.    .....+.++|..+.......|                   .-++....+..+++
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv  239 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV  239 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence            89999999999764  1 2111    112246677777664321111                   12444555778999


Q ss_pred             EEcCCCCeeEEecCCCccEEEEEEc-----cCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc-cCCceEEEEEc
Q 001310          514 WLYDSLGARVDYDAPGLGCTRMAYS-----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFD  587 (1103)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s-----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~  587 (1103)
                      +...+.+..............+++-     ..+..|++...    ++.++++.+..-+.+..+.-... ....+....++
T Consensus       240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~----~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis  315 (395)
T PF08596_consen  240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFN----NGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS  315 (395)
T ss_dssp             E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEET----TSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred             EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEEC----CCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence            9888777665554332344445553     34556666654    66699999998888777665320 11223445566


Q ss_pred             CCCCEEEEEe
Q 001310          588 TAKDQILAAG  597 (1103)
Q Consensus       588 ~~~~~l~~~~  597 (1103)
                      ++|..++-.+
T Consensus       316 ~~Gdi~~~~g  325 (395)
T PF08596_consen  316 RNGDIFYWTG  325 (395)
T ss_dssp             TTS-EEEE-S
T ss_pred             CCCCEEEEeC
Confidence            6666554443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.82  E-value=0.0049  Score=71.95  Aligned_cols=210  Identities=14%  Similarity=0.095  Sum_probs=118.2

Q ss_pred             CCeeEEEEcCCCCCEEEEEe------CCC--eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC-CeEEEE-
Q 001310          844 PTATSLAFNPHDNNVIAIGM------DDS--TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVW-  913 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~------~dg--~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-g~I~iw-  913 (1103)
                      ..+.+.++|| +++.+|...      .|+  .|.+++.. +.......+.  ..+.-.|+|||+.|++.+.. ..+++. 
T Consensus       350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence            4678899999 777766654      243  55555642 3332223332  37788999999988877533 223333 


Q ss_pred             ----------EcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEE---EECCCceEEE----EeeCC
Q 001310          914 ----------DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAI---YEAEELTCLK----QWFPI  976 (1103)
Q Consensus       914 ----------d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~i---wd~~~~~~~~----~~~~~  976 (1103)
                                +++.++...           ...+.|..+.|||||+.+|...+++|++   -....|+...    .+..+
T Consensus       426 ~~~~gql~~~~vd~ge~~~-----------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~~~l~~~~~l~~~  494 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS-----------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQYALTNPREVGPG  494 (591)
T ss_pred             cCCCceEEEEeccCchhhh-----------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCceeecccEEeecc
Confidence                      333322110           1123699999999999999976788888   5555665111    11222


Q ss_pred             CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC-ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCc
Q 001310          977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN-LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPT 1055 (1103)
Q Consensus       977 h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~ 1055 (1103)
                      -...+.++.|..++.++ ++..++...+|.+.- |.....+. ..                .....+  .+++.+|.   
T Consensus       495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~-~~----------------n~~~~v--~~vaa~~~---  551 (591)
T PRK13616        495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALP-SR----------------NLSAPV--VAVAASPS---  551 (591)
T ss_pred             cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccC-CC----------------CccCce--EEEecCCc---
Confidence            23446889999999854 555555555565432 22111101 00                011223  34555543   


Q ss_pred             EEEEEecCCcEEEEccCCCCCCCccCCccccccCCC
Q 001310         1056 QFAVGLTNGEVYVIEPNEPGDTWAVLPPDEIVGDQP 1091 (1103)
Q Consensus      1056 ~l~~~~~dg~v~vw~~~~~~~~w~~~~~~~~~~~~~ 1091 (1103)
                      .++.+..+|.+.+=.-...+..|...|........+
T Consensus       552 ~iyv~~~~g~~~l~~~~~~~~~W~ev~~l~g~~~~p  587 (591)
T PRK13616        552 TVYVTDARAVLQLPNSDSGDQYWREVPGLMGPRAAP  587 (591)
T ss_pred             eEEEEcCCceEEecCCCCCCCCceECccccCCCccc
Confidence            466666677444333344456888777776655543

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=97.82  E-value=0.13  Score=60.08  Aligned_cols=61  Identities=13%  Similarity=0.148  Sum_probs=43.1

Q ss_pred             CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC
Q 001310          823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH  885 (1103)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  885 (1103)
                      |.+.-+|+.+++...+.........+....  .+.+++.++.+|.++.+|..+|+.+..++-.
T Consensus       441 g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t--~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g  501 (527)
T TIGR03075       441 GSLIAWDPITGKIVWEHKEDFPLWGGVLAT--AGDLVFYGTLEGYFKAFDAKTGEELWKFKTG  501 (527)
T ss_pred             eeEEEEeCCCCceeeEecCCCCCCCcceEE--CCcEEEEECCCCeEEEEECCCCCEeEEEeCC
Confidence            568888999998887765333222222222  3447777888999999999999999887643

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.79  E-value=0.01  Score=66.36  Aligned_cols=208  Identities=13%  Similarity=0.150  Sum_probs=146.4

Q ss_pred             CCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeC---CCeEEEEEcCCce
Q 001310          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---DSTILIYNARSSE  877 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~---dg~v~iwd~~~~~  877 (1103)
                      .....+++++++..+....  ++.|.+.|..+.+......... ....++++| +++.+.++..   ++++.+.|..+.+
T Consensus        74 ~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~  151 (381)
T COG3391          74 VYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNK  151 (381)
T ss_pred             ccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECC-CCCEEEEEecccCCceEEEEeCCCCe
Confidence            3445778888888555554  5889999988777776655332 667899999 6655555544   6899999999988


Q ss_pred             eEEEeccCCCCEEEEEEccCCCEEEEE-eCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--
Q 001310          878 VISKLEGHSKRVTGLVFSDALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--  954 (1103)
Q Consensus       878 ~~~~l~~h~~~V~~l~~s~dg~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--  954 (1103)
                      .......-..+ ..++++|+|+.+... ..++.|.+.|........ ..   .............+.++|+|.++.+.  
T Consensus       152 ~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~---~~~~~~~~~~P~~i~v~~~g~~~yV~~~  226 (381)
T COG3391         152 VTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GS---VGSLVGVGTGPAGIAVDPDGNRVYVAND  226 (381)
T ss_pred             EEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cc---cccccccCCCCceEEECCCCCEEEEEec
Confidence            87775433334 889999999965554 478999999977754321 11   00011111246789999999988774  


Q ss_pred             eC--CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCceeEEeec
Q 001310          955 HE--THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       955 ~d--~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      .+  +.+...|..++.........-......+.++|+|+++.+.. ..+.+.+-|..+......+.
T Consensus       227 ~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~  292 (381)
T COG3391         227 GSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGP  292 (381)
T ss_pred             cCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeec
Confidence            22  58999999988877652222111556789999999988874 44889999999988876655

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=97.77  E-value=0.0028  Score=70.75  Aligned_cols=175  Identities=15%  Similarity=0.149  Sum_probs=111.3

Q ss_pred             eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe---CC-CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCC
Q 001310          824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM---DD-STILIYNARSSEVISKLEGHSKRVTGLVFSDALN  899 (1103)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~---~d-g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~  899 (1103)
                      .+.+-|.. +...+.+......+..-+|+| +++.++...   .. ..++++++.+++....+. ..+.-..-+|||||+
T Consensus       174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~-~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~  250 (425)
T COG0823         174 ELALGDYD-GYNQQKLTDSGSLILTPAWSP-DGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGS  250 (425)
T ss_pred             eEEEEccC-CcceeEecccCcceeccccCc-CCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCC
Confidence            34445554 555566665666778888999 666655442   22 469999999886544443 223334578999998


Q ss_pred             EEEEE-eCCCe--EEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC----eEEEEECCCceEEEE
Q 001310          900 ILVSS-GGDAQ--IFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----HLAIYEAEELTCLKQ  972 (1103)
Q Consensus       900 ~l~s~-s~dg~--I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~----~v~iwd~~~~~~~~~  972 (1103)
                      .|+.+ ..||.  |.+.|+.++....   +....+      .-+.-.|||||++|+-.+|.    .|++++.+.+.....
T Consensus       251 ~l~f~~~rdg~~~iy~~dl~~~~~~~---Lt~~~g------i~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~ri  321 (425)
T COG0823         251 KLAFSSSRDGSPDIYLMDLDGKNLPR---LTNGFG------INTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRL  321 (425)
T ss_pred             EEEEEECCCCCccEEEEcCCCCccee---cccCCc------cccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEe
Confidence            87755 45665  6666777655211   222222      23467899999999985443    588888887765433


Q ss_pred             eeCCCCcCeEEEEEccCCCEEEEEecC-Cc--EEEEeCCCcee
Q 001310          973 WFPISSVPISQATFSCDCRMVFTSFVD-GT--LSIHEASNLEV 1012 (1103)
Q Consensus       973 ~~~~h~~~v~~l~fs~dg~~l~t~~~d-g~--v~vWd~~~~~~ 1012 (1103)
                      ...+  +.-..-.+||||++++..+.. |.  |.+.|+.++..
T Consensus       322 T~~~--~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~  362 (425)
T COG0823         322 TFSG--GGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK  362 (425)
T ss_pred             eccC--CCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc
Confidence            2322  222277899999998877643 44  77777776664

>smart00667 LisH Lissencephaly type-1-like homology motif

Probab=97.77  E-value=3.6e-05  Score=51.47  Aligned_cols=32  Identities=34%  Similarity=0.552  Sum_probs=29.6

Q ss_pred             hhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001310            4 LNKDLVFLILQFLNEEGFTESAHMLERESRFY   35 (1103)
Q Consensus         4 ~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~   35 (1103)
                      .++++.++|+|||...||.+|+++|++|+|+.
T Consensus         2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~   33 (34)
T smart00667        2 SRSELNRLILEYLLRNGYEETAETLQKESGLS   33 (34)
T ss_pred             cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence            36789999999999999999999999999974

Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=97.74  E-value=0.01  Score=65.71  Aligned_cols=241  Identities=13%  Similarity=0.085  Sum_probs=136.6

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccc----------------------------------------cceEe
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR----------------------------------------QQLEI  437 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~----------------------------------------~~~~l  437 (1103)
                      .|+++.|+++..-||+|...|.|.||.+...+...                                        +..-+
T Consensus         3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~   82 (395)
T PF08596_consen    3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL   82 (395)
T ss_dssp             -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred             eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence            58899999999999999999999999875432211                                        11123


Q ss_pred             ccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe--ec------CCCceEEEEeee---cCCc---cEEE
Q 001310          438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EG------HGAPVYSLCPHA---KENI---HFIF  503 (1103)
Q Consensus       438 ~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~------~~~~v~~~~~~~---~~~~---~~l~  503 (1103)
                      ....++|++++.|.=|   +++.|..+|.+.|.|++....++.-  ..      ....|+++.|..   ..|+   -.++
T Consensus        83 ~~~~g~vtal~~S~iG---Fvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~  159 (395)
T PF08596_consen   83 DAKQGPVTALKNSDIG---FVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL  159 (395)
T ss_dssp             ---S-SEEEEEE-BTS---EEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred             eccCCcEeEEecCCCc---EEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence            3346789999998666   7999999999999999888877652  22      234577776652   3333   4788


Q ss_pred             EEECCCeEEEEEcCC-CCeeE------EecCCCccEEEEE-EccC---------------------CCEEEEEecCCCCc
Q 001310          504 SISVDGKIKAWLYDS-LGARV------DYDAPGLGCTRMA-YSAN---------------------GRRLFSCGTSKEGE  554 (1103)
Q Consensus       504 s~~~dg~i~iwd~~~-~~~~~------~~~~~~~~i~~~~-~s~d---------------------g~~l~~~~~~~~~~  554 (1103)
                      +|...|.+.+|.+.. .....      ....+..++..+. ++.+                     ..++++++     +
T Consensus       160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-----e  234 (395)
T PF08596_consen  160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-----E  234 (395)
T ss_dssp             EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE------S
T ss_pred             EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-----c
Confidence            999999999998752 11111      1113344444444 3222                     11444444     3


Q ss_pred             eeEEEEeCCCCeeEEEEecccccCCceEEEEEc-----CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC--CCCCce
Q 001310          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LPENPR  627 (1103)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~  627 (1103)
                      ..++++...+.+...+.....   .....+.+-     ..+..|++-..+|.|+++.+..-+.+........  ...+..
T Consensus       235 ~~irv~~~~~~k~~~K~~~~~---~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~  311 (395)
T PF08596_consen  235 SDIRVFKPPKSKGAHKSFDDP---FLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSS  311 (395)
T ss_dssp             SEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT
T ss_pred             cceEEEeCCCCcccceeeccc---cccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccc
Confidence            348999888777665544221   122333342     3466778888999999999999988888776421  112456


Q ss_pred             EEEecCCCEEEEEECCCeEEEEE
Q 001310          628 ICFNKNGTLLAVIANENRIKILE  650 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~  650 (1103)
                      .+++++|..++..+. ..+.++.
T Consensus       312 ssis~~Gdi~~~~gp-sE~~l~s  333 (395)
T PF08596_consen  312 SSISRNGDIFYWTGP-SEIQLFS  333 (395)
T ss_dssp             -EE-TTS-EEEE-SS-SEEEEEE
T ss_pred             cEECCCCCEEEEeCc-ccEEEEE
Confidence            778888886665544 3444443

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.74  E-value=0.015  Score=59.45  Aligned_cols=201  Identities=11%  Similarity=0.075  Sum_probs=111.5

Q ss_pred             CCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCC-CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310          801 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1103)
                      -...++.+++.|+...|++..  .+.|...+. +|+.++++.-. .+..-.+++.. ++.++++--.++.+.++++....
T Consensus        20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred             ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence            555699999999877666655  367877786 57888877543 35778899987 67676666568999999884321


Q ss_pred             ------eEEEec-----cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC---CceeeeeeeecCCCcccCCCCceEEE
Q 001310          878 ------VISKLE-----GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG---WGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       878 ------~~~~l~-----~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~---~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1103)
                            ....+.     .+...+-.++|.|.++.|..+-+..-..++.+..   .....................+.+++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence                  112221     2455689999999988888777776677777654   11111111111110011112578999


Q ss_pred             EcCCCCEEEE-E-eCCeEEEEECCCceEEEEee--CCC------CcCeEEEEEccCCCEEEEEecCCcEEEE
Q 001310          944 FHKDQTRFLL-V-HETHLAIYEAEELTCLKQWF--PIS------SVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1103)
Q Consensus       944 fs~dg~~l~~-~-~d~~v~iwd~~~~~~~~~~~--~~h------~~~v~~l~fs~dg~~l~t~~~dg~v~vW 1005 (1103)
                      +.|....|.+ + .+..|..+| .+|+.+..+.  .+.      -...=.|+|.++|++.++ ++-+..++|
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEE-cCCceEEEe
Confidence            9998766555 5 567899999 5577665432  211      124567999999976665 566666654

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.73  E-value=0.0056  Score=68.59  Aligned_cols=222  Identities=10%  Similarity=0.067  Sum_probs=118.2

Q ss_pred             cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       393 ~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      ......+..+.++|+|++++++ .+|.-.|+.....   +.     ...+.-...+|.+.++   +|+-...++|.|+.-
T Consensus        29 g~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~kn   96 (443)
T PF04053_consen   29 GSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYKN   96 (443)
T ss_dssp             EE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEET
T ss_pred             CCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEEc
Confidence            3345567889999999999995 6777788873221   21     1234456788998665   666666888999743


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      -+.+....++.. ..+..+..     |.+|...+. +.|.+||+.+++....+...  +|..+.|+++|.+++..+.+  
T Consensus        97 ~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~--  165 (443)
T PF04053_consen   97 FKNEVVKSIKLP-FSVEKIFG-----GNLLGVKSS-DFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD--  165 (443)
T ss_dssp             TEE-TT-----S-S-EEEEE------SSSEEEEET-TEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S---
T ss_pred             CccccceEEcCC-cccceEEc-----CcEEEEECC-CCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC--
Confidence            333333333321 12333321     455555554 48999999999888877754  48899999999999998742  


Q ss_pred             CceeEEEEeCCCC-----------eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCC
Q 001310          553 GESFLVEWNESEG-----------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAG  619 (1103)
Q Consensus       553 ~~~~i~iwd~~~~-----------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~  619 (1103)
                         .+++++....           .....+....   ..|.+..|..+  .++-.+.. .++.  +-.|+.  +..+.  
T Consensus       166 ---~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~---~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld--  232 (443)
T PF04053_consen  166 ---SIYILKYNLEAVAAIPEEGVEDAFELIHEIS---ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD--  232 (443)
T ss_dssp             ---SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S--
T ss_pred             ---eEEEEEecchhcccccccCchhceEEEEEec---ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC--
Confidence               3666654332           0222222212   56788888765  44444444 6665  333433  33332  


Q ss_pred             CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          620 GGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       620 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                         .++.-+.+.++.+.+.....++.+..+.+..
T Consensus       233 ---~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~  263 (443)
T PF04053_consen  233 ---KPLYLLGYLPKENRLYLIDRDGNVISYELDL  263 (443)
T ss_dssp             ---S--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred             ---CceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence               2356777888778888888888888887763

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.73  E-value=0.0076  Score=71.21  Aligned_cols=212  Identities=11%  Similarity=0.033  Sum_probs=127.0

Q ss_pred             CCCEEEEE-eCCCeEEEEEcCCceeEEEeccCCCC-EEEEEEcc-----CCCEEEEEeCCCeEEEEEcCCCceeeeeeee
Q 001310          855 DNNVIAIG-MDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSD-----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQ  927 (1103)
Q Consensus       855 d~~~lasg-~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~-----dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~  927 (1103)
                      +.++|+.. .....|+-.|+.+|+.+..+..|... |..++-..     +..--..|-.+..+..||..-..   ..++.
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~---~k~v~  568 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG---NKLVD  568 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC---Cceee
Confidence            44554443 34578999999999999999987754 55544321     12233456667779999987532   11221


Q ss_pred             cCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          928 TPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       928 ~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                      ............+|++-+.+|...+.+.+|.|++||- .|..-.+.+++-+.+|.+|..+.||+++++.+ +..+.+++.
T Consensus       569 ~~~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  569 SQSKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ccccccccCCCceEEEecCCceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            1111111223578888888888777779999999994 45555566777789999999999999988554 678889887


Q ss_pred             C--CceeEEeeccccccCC-CCCCCceeeEeecc--------CCceeeEEEEECC--CCCcEEEEEecCCcEEEEcc
Q 001310         1008 S--NLEVQCRILSTAYLRP-TTSHDKILCFCYCS--------CLHVYPHAIAAHP--LKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1008 ~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~--------~~~v~~~~~~~~p--~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      .  .|+-..........+. .....+.+.+...|        +.++.=....|+-  +.....++++....+.+|++
T Consensus       647 ~~~~g~~~g~~GF~~~~~~~~kp~Pr~L~L~pe~~~~~~~~~~~~~~Ft~a~Fnt~~~~~E~~IvtstG~f~v~Wnf  723 (794)
T PF08553_consen  647 LIKDGKNSGKLGFEKSFGKDKKPQPRRLQLKPEHVAYMQHETGKPISFTPAKFNTGIGKQETSIVTSTGPFVVTWNF  723 (794)
T ss_pred             eeecCCccCccccccccCccCCCCCeEEecCHHHHHHHHhccCCCceeeceEEecCCCCccceEEEeccCEEEEEEH
Confidence            4  3322222222222221 11223444443222        2333222334431  11234444566778999996

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.72  E-value=0.016  Score=65.23  Aligned_cols=199  Identities=16%  Similarity=0.148  Sum_probs=109.9

Q ss_pred             EEEecCCCEEEEEcCC------------eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001310          808 FALSKNDAYLFSASGG------------VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1103)
Q Consensus       808 l~~s~d~~~l~~~~dg------------~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1103)
                      ++.+|.|-.+|...+.            .|+||+.. |+.+.++.-..+.+.++.|+. +. .|++-..||.+++||+. 
T Consensus        34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~-~e-~LvvV~~dG~v~vy~~~-  109 (410)
T PF04841_consen   34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTD-DE-ELVVVQSDGTVRVYDLF-  109 (410)
T ss_pred             EEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECC-CC-eEEEEEcCCEEEEEeCC-
Confidence            4556666666655433            58899875 666666554448999999997 44 55567789999999987 


Q ss_pred             cee-------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC--CCCceE-EEEc
Q 001310          876 SEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL--APSETH-IQFH  945 (1103)
Q Consensus       876 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~--~~~v~~-l~fs  945 (1103)
                      |+.       +....-....+....+..+|-.+.  ..++.+.+-+--............+......  ...... ..++
T Consensus       110 G~~~fsl~~~i~~~~v~e~~i~~~~~~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~  187 (410)
T PF04841_consen  110 GEFQFSLGEEIEEEKVLECRIFAIWFYKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS  187 (410)
T ss_pred             CceeechhhhccccCcccccccccccCCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEee
Confidence            333       111111222233334444563333  3444444332222111100000111110000  001111 3355


Q ss_pred             CCCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          946 KDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       946 ~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      .+....+. ..++.+.+.+....+.    . ...+++..+++||+|+++|.-..+|.+.|...+-.+..+.+.
T Consensus       188 ~~~~~~i~~~~g~~i~~i~~~~~~~----i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~  255 (410)
T PF04841_consen  188 SDRVVEILLANGETIYIIDENSFKQ----I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFD  255 (410)
T ss_pred             cCcceEEEEecCCEEEEEEcccccc----c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEee
Confidence            55554444 4555666444332211    1 124689999999999999999999999999877666666665

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.71  E-value=0.0052  Score=68.84  Aligned_cols=219  Identities=13%  Similarity=0.143  Sum_probs=116.5

Q ss_pred             EEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCE
Q 001310          737 ISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAY  816 (1103)
Q Consensus       737 i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~  816 (1103)
                      ...+.++|+|+.+++ +.+|...++......                       .        ...+.-..++|.+.+++
T Consensus        35 p~~ls~npngr~v~V-~g~geY~iyt~~~~r-----------------------~--------k~~G~g~~~vw~~~n~y   82 (443)
T PF04053_consen   35 PQSLSHNPNGRFVLV-CGDGEYEIYTALAWR-----------------------N--------KAFGSGLSFVWSSRNRY   82 (443)
T ss_dssp             -SEEEE-TTSSEEEE-EETTEEEEEETTTTE-----------------------E--------EEEEE-SEEEE-TSSEE
T ss_pred             CeeEEECCCCCEEEE-EcCCEEEEEEccCCc-----------------------c--------cccCceeEEEEecCccE
Confidence            568899999998887 556666666521100                       0        02234456889887775


Q ss_pred             EEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEcc
Q 001310          817 LFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSD  896 (1103)
Q Consensus       817 l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~  896 (1103)
                      .+.-..++|.|+.--+.+....+... ..+..+-.    |.+|+..+.+ .|.+||..+++.+.++...  +|..+.||+
T Consensus        83 Av~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~  154 (443)
T PF04053_consen   83 AVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSD  154 (443)
T ss_dssp             EEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-T
T ss_pred             EEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEEC
Confidence            55555788999744333333344322 22333332    6677777655 8999999999999998843  389999999


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCC---------ceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCc
Q 001310          897 ALNILVSSGGDAQIFVWDVDGW---------GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1103)
Q Consensus       897 dg~~l~s~s~dg~I~iwd~~~~---------~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~  967 (1103)
                      +|.++|..+.+. +.|++.+..         -......+....      ..|.+.+|..| -++.+... +++-+-  .|
T Consensus       155 ~g~~val~t~~~-i~il~~~~~~~~~~~~~g~e~~f~~~~E~~------~~IkSg~W~~d-~fiYtT~~-~lkYl~--~G  223 (443)
T PF04053_consen  155 DGELVALVTKDS-IYILKYNLEAVAAIPEEGVEDAFELIHEIS------ERIKSGCWVED-CFIYTTSN-HLKYLV--NG  223 (443)
T ss_dssp             TSSEEEEE-S-S-EEEEEE-HHHHHHBTTTB-GGGEEEEEEE-------S--SEEEEETT-EEEEE-TT-EEEEEE--TT
T ss_pred             CCCEEEEEeCCe-EEEEEecchhcccccccCchhceEEEEEec------ceeEEEEEEcC-EEEEEcCC-eEEEEE--cC
Confidence            999999988765 778776543         000112222211      25788888877 33333333 666633  33


Q ss_pred             eE--EEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310          968 TC--LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       968 ~~--~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      +.  +.. +   ..++.-+.+.+....+.....|+.|..+.+...
T Consensus       224 e~~~i~~-l---d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~  264 (443)
T PF04053_consen  224 ETGIIAH-L---DKPLYLLGYLPKENRLYLIDRDGNVISYELDLS  264 (443)
T ss_dssp             EEEEEEE-----SS--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred             CcceEEE-c---CCceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence            33  222 1   446666777787778888888888888877643

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.012  Score=58.61  Aligned_cols=206  Identities=15%  Similarity=0.074  Sum_probs=123.5

Q ss_pred             EEEEecCCC-EEEEEc-CCe-EEEEEcCCceeeEEecCCCC--CeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCc
Q 001310          807 CFALSKNDA-YLFSAS-GGV-ISLYIVMTFKTILTIMPPSP--TATSLAFNPHDNNVIAIGMDD-----STILIYNARSS  876 (1103)
Q Consensus       807 ~l~~s~d~~-~l~~~~-dg~-i~iwd~~~~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~  876 (1103)
                      .++++|--. -++.+- -|+ ..++|....+.+.++....+  ---.=.||| ||.+|...-.|     |.|-|||...+
T Consensus        72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecccc
Confidence            567777643 344443 355 67899988887776654332  123347999 89888875443     79999999854


Q ss_pred             -eeEEEeccCCCCEEEEEEccCCCEEEEEeCC------------------CeEEEEEcCCCceeeeeeeecCCCcccCCC
Q 001310          877 -EVISKLEGHSKRVTGLVFSDALNILVSSGGD------------------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  937 (1103)
Q Consensus       877 -~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d------------------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  937 (1103)
                       +.+..+..|.-.-..+.+.+||+.|+.+...                  -.+.+.|-.+|.+.....+.....+    .
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~----l  226 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ----L  226 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh----c
Confidence             5667788887777889999999999876431                  0133333333333222222211111    3


Q ss_pred             CceEEEEcCCCCEEEEE-eCC-----eEEEEECCCceEEEEeeCC------CCcCeEEEEEccCCCEEE-EEecCCcEEE
Q 001310          938 SETHIQFHKDQTRFLLV-HET-----HLAIYEAEELTCLKQWFPI------SSVPISQATFSCDCRMVF-TSFVDGTLSI 1004 (1103)
Q Consensus       938 ~v~~l~fs~dg~~l~~~-~d~-----~v~iwd~~~~~~~~~~~~~------h~~~v~~l~fs~dg~~l~-t~~~dg~v~v 1004 (1103)
                      ++..++.-+||..++.+ ..|     -..+=-...|+.+.-+-..      -...|-+++..-+..+++ |+-..+...+
T Consensus       227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi  306 (366)
T COG3490         227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI  306 (366)
T ss_pred             ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence            68889999999887763 111     1111111223322211111      145677788776555554 4445667889


Q ss_pred             EeCCCceeEEeec
Q 001310         1005 HEASNLEVQCRIL 1017 (1103)
Q Consensus      1005 Wd~~~~~~~~~~~ 1017 (1103)
                      ||..+|.++..-.
T Consensus       307 ~da~tG~vv~~a~  319 (366)
T COG3490         307 WDAATGAVVSEAA  319 (366)
T ss_pred             EEcCCCcEEeccc
Confidence            9999999874443

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.70  E-value=0.03  Score=55.87  Aligned_cols=256  Identities=16%  Similarity=0.150  Sum_probs=142.5

Q ss_pred             ceEEEEEcCCCCE-EEEEeCCCc-EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEEcC
Q 001310          580 SVSVVHFDTAKDQ-ILAAGDDHV-IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILETP  652 (1103)
Q Consensus       580 ~v~~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----g~i~iw~~~  652 (1103)
                      .-..++|+|...+ ++.+-.-|+ ..++|....+...++....+....-.-.|||||.+|+..-.|     |.|-+||..
T Consensus        69 R~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r  148 (366)
T COG3490          69 RGHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAR  148 (366)
T ss_pred             ccCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecc
Confidence            3445778887544 444655565 568999988887777654433233345799999999876443     677888876


Q ss_pred             CC-CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCc
Q 001310          653 ES-NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSK  731 (1103)
Q Consensus       653 ~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~  731 (1103)
                      .+ +.+..+..                                                                     
T Consensus       149 ~~fqrvgE~~t---------------------------------------------------------------------  159 (366)
T COG3490         149 EGFQRVGEFST---------------------------------------------------------------------  159 (366)
T ss_pred             cccceeccccc---------------------------------------------------------------------
Confidence            43 11111111                                                                     


Q ss_pred             cccccEEEEEEecCCcEEEEeecCceEEEe-ecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310          732 VKANKISRLTYNNGGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1103)
Q Consensus       732 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  810 (1103)
                       |.-.-..+.+.+||+.++.+..  -|... +....++..+..   .-.+-+.+..+|..+....++..-+...|..++.
T Consensus       160 -~GiGpHev~lm~DGrtlvvanG--GIethpdfgR~~lNldsM---ePSlvlld~atG~liekh~Lp~~l~~lSiRHld~  233 (366)
T COG3490         160 -HGIGPHEVTLMADGRTLVVANG--GIETHPDFGRTELNLDSM---EPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDI  233 (366)
T ss_pred             -CCcCcceeEEecCCcEEEEeCC--ceecccccCccccchhhc---CccEEEEeccccchhhhccCchhhhhcceeeeee
Confidence             2222234556677776655432  23322 222211111111   1123445656666566666654446778899999


Q ss_pred             ecCCCEEEEEc-CC----e-EEEEEcCCceeeEEecC-------CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310          811 SKNDAYLFSAS-GG----V-ISLYIVMTFKTILTIMP-------PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1103)
Q Consensus       811 s~d~~~l~~~~-dg----~-i~iwd~~~~~~~~~~~~-------~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1103)
                      .+||..++.+. .|    . --+=-...++.+.-+..       ....|-+++.+.+++-..++.-..+...+||..+|.
T Consensus       234 g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~  313 (366)
T COG3490         234 GRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGA  313 (366)
T ss_pred             CCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCc
Confidence            99998887763 11    1 11111123344333332       224678888887455555555566688899999998


Q ss_pred             eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310          878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1103)
Q Consensus       878 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd  914 (1103)
                      .+..-.-  ..+..++-  ...-++..+.+|.+..++
T Consensus       314 vv~~a~l--~daaGva~--~~~gf~vssg~G~~~~~s  346 (366)
T COG3490         314 VVSEAAL--PDAAGVAA--AKGGFAVSSGQGRIIFYS  346 (366)
T ss_pred             EEecccc--ccccccee--ccCceEEecCCceEEecc
Confidence            7654321  11222332  333456667788887773

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.69  E-value=0.042  Score=61.85  Aligned_cols=230  Identities=13%  Similarity=0.098  Sum_probs=112.0

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc---ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA---RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~---~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  473 (1103)
                      +.|.++.|+.+.. |++...||.+++||+.+....   .......-....+.+..+..+|-  .+++.  ++.+.+-+-.
T Consensus        81 ~~iv~~~wt~~e~-LvvV~~dG~v~vy~~~G~~~fsl~~~i~~~~v~e~~i~~~~~~~~Gi--vvLt~--~~~~~~v~n~  155 (410)
T PF04841_consen   81 GRIVGMGWTDDEE-LVVVQSDGTVRVYDLFGEFQFSLGEEIEEEKVLECRIFAIWFYKNGI--VVLTG--NNRFYVVNNI  155 (410)
T ss_pred             CCEEEEEECCCCe-EEEEEcCCEEEEEeCCCceeechhhhccccCcccccccccccCCCCE--EEECC--CCeEEEEeCc
Confidence            7999999998655 445669999999999743200   00000111112233334444453  33333  3444443322


Q ss_pred             CCc-eeEEe---ecCCC------ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCE
Q 001310          474 TGS-RTYSF---EGHGA------PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR  543 (1103)
Q Consensus       474 ~~~-~~~~~---~~~~~------~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~  543 (1103)
                      ... ..+.+   .+...      ....+ .....+....+....++.+.+.+-.....    ....+++..+++||+|++
T Consensus       156 ~~~~~~~~~~~~p~~~~~~~~~~~~~~i-~~l~~~~~~~i~~~~g~~i~~i~~~~~~~----i~~~~~i~~iavSpng~~  230 (410)
T PF04841_consen  156 DEPVKLRRLPEIPGLWTKFHWWPSWTVI-PLLSSDRVVEILLANGETIYIIDENSFKQ----IDSDGPIIKIAVSPNGKF  230 (410)
T ss_pred             cccchhhccccCCCcccccccccccccc-eEeecCcceEEEEecCCEEEEEEcccccc----ccCCCCeEEEEECCCCCE
Confidence            211 11111   11000      00001 11122333444445555555333222111    112458999999999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1103)
                      ++....    ++.+.+....-.+....+....  ......+.|..+...++.-  ...+.+...           .+   
T Consensus       231 iAl~t~----~g~l~v~ssDf~~~~~e~~~~~--~~~p~~~~WCG~dav~l~~--~~~l~lvg~-----------~~---  288 (410)
T PF04841_consen  231 IALFTD----SGNLWVVSSDFSEKLCEFDTDS--KSPPKQMAWCGNDAVVLSW--EDELLLVGP-----------DG---  288 (410)
T ss_pred             EEEEEC----CCCEEEEECcccceeEEeecCc--CCCCcEEEEECCCcEEEEe--CCEEEEECC-----------CC---
Confidence            998875    4557777766555555555432  2455566666543222221  223333321           11   


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecc
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                        ..+.|.-++..++..-.|| +||......+.++...
T Consensus       289 --~~~~~~~~~~~~l~~E~DG-~riit~~~~~~l~~Vp  323 (410)
T PF04841_consen  289 --DSISFWYDGPVILVSEIDG-VRIITSTSHEFLQRVP  323 (410)
T ss_pred             --CceEEeccCceEEeccCCc-eEEEeCCceEEEEECC
Confidence              2245554555555555566 8888766555555544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.67  E-value=0.038  Score=63.22  Aligned_cols=250  Identities=13%  Similarity=0.112  Sum_probs=127.9

Q ss_pred             ccEEEEEECCCCCEEEEE-eCCC----eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-C-------
Q 001310          397 VSVNRVVWSPDGSLLGVA-YSKH----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-D-------  463 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~-~~d~----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~-------  463 (1103)
                      ..+..+++||||++||.+ +..|    ++++.|+.+|+.+..  .+...  .-..+.|.+|++. ++++.. .       
T Consensus       124 ~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d--~i~~~--~~~~~~W~~d~~~-~~y~~~~~~~~~~~~  198 (414)
T PF02897_consen  124 VSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD--GIENP--KFSSVSWSDDGKG-FFYTRFDEDQRTSDS  198 (414)
T ss_dssp             EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE--EEEEE--ESEEEEECTTSSE-EEEEECSTTTSS-CC
T ss_pred             EEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC--ccccc--ccceEEEeCCCCE-EEEEEeCcccccccC
Confidence            345578999999999977 3333    599999999864432  11111  1223999999985 333332 2       


Q ss_pred             --CCceEEEeCCCCcee--EEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCC----CeeEEecCCCcc
Q 001310          464 --DKTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL----GARVDYDAPGLG  531 (1103)
Q Consensus       464 --d~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~----~~~~~~~~~~~~  531 (1103)
                        ...|+.|.+.++..-  ..+.........+....+.++++++..+..    ..+.+.++...    .....+......
T Consensus       199 ~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~  278 (414)
T PF02897_consen  199 GYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDG  278 (414)
T ss_dssp             GCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS
T ss_pred             CCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCc
Confidence              223788888776543  444444444322333335677776654332    23666777664    122222222223


Q ss_pred             EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee---EEEEecccccCCceEEEEEcCCCCEEEE-EeCCC--cEEEE
Q 001310          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH--VIKIW  605 (1103)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg--~i~iw  605 (1103)
                      +....-.. +..++..+..+...+.|...++.....   ...+..+. ....+..+..  .+++|+. ...++  .|+++
T Consensus       279 ~~~~v~~~-~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~-~~~~l~~~~~--~~~~Lvl~~~~~~~~~l~v~  354 (414)
T PF02897_consen  279 VEYYVDHH-GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPED-EDVSLEDVSL--FKDYLVLSYRENGSSRLRVY  354 (414)
T ss_dssp             -EEEEEEE-TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--S-SSEEEEEEEE--ETTEEEEEEEETTEEEEEEE
T ss_pred             eEEEEEcc-CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCC-CceeEEEEEE--ECCEEEEEEEECCccEEEEE
Confidence            32222223 444443333444567788888887652   22343333 0123444444  4455555 33443  57889


Q ss_pred             ECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCCe
Q 001310          606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESNS  656 (1103)
Q Consensus       606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~~  656 (1103)
                      ++..+.....+..... ..|..+...++++.+.....    -+++..||+.+++.
T Consensus       355 ~~~~~~~~~~~~~p~~-g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~  408 (414)
T PF02897_consen  355 DLDDGKESREIPLPEA-GSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGEL  408 (414)
T ss_dssp             ETT-TEEEEEEESSSS-SEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCE
T ss_pred             ECCCCcEEeeecCCcc-eEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCE
Confidence            9984555555554432 22344444455554433222    25677788877754

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.62  E-value=0.003  Score=73.75  Aligned_cols=184  Identities=9%  Similarity=0.063  Sum_probs=105.5

Q ss_pred             CCeeEEEEecCCCEEEEEc-------CC--eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC--------
Q 001310          803 EAVPCFALSKNDAYLFSAS-------GG--VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD--------  865 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~-------dg--~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d--------  865 (1103)
                      ..+...++||||+.++...       +.  .+.+++.. +.. +.+.. ....+.-.|+| ||+.|++....        
T Consensus       350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~-g~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~  425 (591)
T PRK13616        350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE-GHSLTRPSWSL-DADAVWVVVDGNTVVRVIR  425 (591)
T ss_pred             cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec-CCCCCCceECC-CCCceEEEecCcceEEEec
Confidence            4678899999999988764       33  35555542 222 33322 22478899999 77766666422        


Q ss_pred             ----CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEE---EEcCCCceeeeeeeecCCCcccCCCC
Q 001310          866 ----STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFV---WDVDGWGIQTCRSLQTPDGVMTLAPS  938 (1103)
Q Consensus       866 ----g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~i---wd~~~~~~~~~~~~~~~~~~~~~~~~  938 (1103)
                          +.+.+.++..++...   ...+.|..+.|||||+.+|... ++.|.+   -....|+...........+..   ..
T Consensus       426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~---~~  498 (591)
T PRK13616        426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG---DT  498 (591)
T ss_pred             cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC---Cc
Confidence                233333444443322   2346799999999999998776 477777   444555422211222222111   13


Q ss_pred             ceEEEEcCCCCEEEEEeC--CeEEEEECCCceEEEEeeCC--CCcCeEEEEEccCCCEEEEEecCCc
Q 001310          939 ETHIQFHKDQTRFLLVHE--THLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGT 1001 (1103)
Q Consensus       939 v~~l~fs~dg~~l~~~~d--~~v~iwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~ 1001 (1103)
                      +.++.|.+++.+++...+  ..++..+++ |..... ..+  ...++.+++-+++  .++....++.
T Consensus       499 ~~~l~W~~~~~L~V~~~~~~~~v~~v~vD-G~~~~~-~~~~n~~~~v~~vaa~~~--~iyv~~~~g~  561 (591)
T PRK13616        499 AVSLDWRTGDSLVVGRSDPEHPVWYVNLD-GSNSDA-LPSRNLSAPVVAVAASPS--TVYVTDARAV  561 (591)
T ss_pred             cccceEecCCEEEEEecCCCCceEEEecC-Cccccc-cCCCCccCceEEEecCCc--eEEEEcCCce
Confidence            578999999997654433  345555555 322221 222  2566777776653  3444455653

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.60  E-value=0.17  Score=56.68  Aligned_cols=250  Identities=14%  Similarity=0.133  Sum_probs=160.7

Q ss_pred             cEEEEEECCCCCEEEEEeCC-CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310          398 SVNRVVWSPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  476 (1103)
                      ....++..+++..+...... ..+..-+... .....  ....-...-..++.++++.+ ..+....+..|.+.|..+.+
T Consensus        32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~-n~~~~--~~~~g~~~p~~i~v~~~~~~-vyv~~~~~~~v~vid~~~~~  107 (381)
T COG3391          32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATS-NTVTQ--SLSVGGVYPAGVAVNPAGNK-VYVTTGDSNTVSVIDTATNT  107 (381)
T ss_pred             CCceeEEcCccCEEEEEeecCceeeeccccc-ceeee--eccCCCccccceeeCCCCCe-EEEecCCCCeEEEEcCcccc
Confidence            55567888888665554322 2344444431 11111  11111133457788888886 45555557899999988888


Q ss_pred             eeEEeecCCCceEEEEeeecCCccEEEEEEC---CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      .......-. ....+++.+  ++..+..+..   ++++.+.|-.+............+ ..++++|+|+.++.+.   ..
T Consensus       108 ~~~~~~vG~-~P~~~~~~~--~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~---~~  180 (381)
T COG3391         108 VLGSIPVGL-GPVGLAVDP--DGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTN---SD  180 (381)
T ss_pred             eeeEeeecc-CCceEEECC--CCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEe---cC
Confidence            777664333 455666644  5545554443   688888888887777664443334 8899999999888876   23


Q ss_pred             ceeEEEEeCCCCeeEEEEec--ccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310          554 ESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1103)
                      ++.|.+.|..+....+ -..  ..........+.+++++++++.....   +.+...|..++............ ....+
T Consensus       181 ~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v  258 (381)
T COG3391         181 DNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGV  258 (381)
T ss_pred             CCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCce
Confidence            6779999977666553 110  01112345678899999977775433   58999999988877662222222 35678


Q ss_pred             EEecCCCEEEEEECC-CeEEEEEcCCCCeeEec
Q 001310          629 CFNKNGTLLAVIANE-NRIKILETPESNSVDAA  660 (1103)
Q Consensus       629 ~~s~~g~~l~~~~~d-g~i~iw~~~~~~~~~~~  660 (1103)
                      .++|+|+.+.+.... +.+.+.|..+.......
T Consensus       259 ~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~  291 (381)
T COG3391         259 AVDPAGKAAYVANSQGGTVSVIDGATDRVVKTG  291 (381)
T ss_pred             eECCCCCEEEEEecCCCeEEEEeCCCCceeeee
Confidence            999999999888554 78888888877655543

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.43  E-value=0.081  Score=56.59  Aligned_cols=235  Identities=10%  Similarity=0.121  Sum_probs=133.2

Q ss_pred             cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCC
Q 001310          744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG  823 (1103)
Q Consensus       744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg  823 (1103)
                      ..++.++.|+.+| +.++++.....                    . ...      .+...|..+...++-+.+++-+|+
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~--------------------~-~~i------~~~~~I~ql~vl~~~~~llvLsd~   56 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSK--------------------P-TRI------LKLSSITQLSVLPELNLLLVLSDG   56 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCcc--------------------c-eeE------eecceEEEEEEecccCEEEEEcCC
Confidence            4567789998888 78877621100                    0 011      133459999999999999999999


Q ss_pred             eEEEEEcCCceeeEEe--------------cCCCCCeeEEE--EcCCCCCEEEEEeCCCeEEEEEcCCc-----eeEEEe
Q 001310          824 VISLYIVMTFKTILTI--------------MPPSPTATSLA--FNPHDNNVIAIGMDDSTILIYNARSS-----EVISKL  882 (1103)
Q Consensus       824 ~i~iwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~d~~~lasg~~dg~v~iwd~~~~-----~~~~~l  882 (1103)
                      .+.++++.........              ......+...+  -...+..+|+++. ..+|.+|.....     +..+.+
T Consensus        57 ~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~  135 (275)
T PF00780_consen   57 QLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEI  135 (275)
T ss_pred             ccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEE
Confidence            9999998765443311              11223344444  1222445555555 458888877653     344555


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC----CcccCCCCceEEEEcCCCCEEEEEeCCe
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD----GVMTLAPSETHIQFHKDQTRFLLVHETH  958 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~----~~~~~~~~v~~l~fs~dg~~l~~~~d~~  958 (1103)
                      . -.+.+.+++|.  ++.++.+..++ ..+.|+.++............    .......++..+.. +++.+|++ .+..
T Consensus       136 ~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~-~~~~  209 (275)
T PF00780_consen  136 S-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLC-YDNI  209 (275)
T ss_pred             E-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEE-ecce
Confidence            4 44778999998  55677776655 889999976643321111111    00000012333333 34555554 3333


Q ss_pred             EEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       959 v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      -...|. .|+..+...-.=.....++++.  ..+|++.+. +.|.||++.+++++..+.
T Consensus       210 g~fv~~-~G~~~r~~~i~W~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~  264 (275)
T PF00780_consen  210 GVFVNK-NGEPSRKSTIQWSSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIP  264 (275)
T ss_pred             EEEEcC-CCCcCcccEEEcCCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEE
Confidence            333333 3443321000002345555653  347776654 569999999999988877

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.42  E-value=5.7e-05  Score=82.49  Aligned_cols=205  Identities=12%  Similarity=0.155  Sum_probs=127.8

Q ss_pred             CcCceEEEecCCCc-eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEE
Q 001310          334 SSSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLL  411 (1103)
Q Consensus       334 ~~~V~~v~~spdg~-~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~l  411 (1103)
                      +..+.|++++-+.+ -++++|..+|.|-+-.+....--.                 .....+|....++++|++ |...|
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs-----------------~E~tp~~ar~Ct~lAwneLDtn~L  118 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSS-----------------AEVTPGYARPCTSLAWNELDTNHL  118 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCccccc-----------------ceecccccccccccccccccHHHH
Confidence            44778888765443 589999999999998876433210                 112556888999999999 77888


Q ss_pred             EEEe----CCCeEEEEEecCCCcc-ccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310          412 GVAY----SKHIVQLYAYHGGSDA-RQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1103)
Q Consensus       412 as~~----~d~~i~iwd~~~~~~~-~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  485 (1103)
                      |+|-    .|..+.|||+.++-.. +....+.+ -.....+++|..|.+  ++.+|...+.+.++|++.... ......+
T Consensus       119 Aagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~-~~~svnT  195 (783)
T KOG1008|consen  119 AAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLD-SVSSVNT  195 (783)
T ss_pred             HhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhh-hhhhhhh
Confidence            8873    3567999999886211 11111222 344566889988877  788999999999999763221 1111122


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEE-cCCCCeeEE-ecC----CCccEEEEEEccCCCE-EEEEecCCCCceeEE
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWL-YDSLGARVD-YDA----PGLGCTRMAYSANGRR-LFSCGTSKEGESFLV  558 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd-~~~~~~~~~-~~~----~~~~i~~~~~s~dg~~-l~~~~~~~~~~~~i~  558 (1103)
                      ..+..+.+.|- .+.++++-. ||.|.+|| ..+-+.... +..    ....+..++|.|-..- +++...   ..++|+
T Consensus       196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr  270 (783)
T KOG1008|consen  196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR  270 (783)
T ss_pred             hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence            33444444442 224665554 99999999 333332221 111    1224888999995443 344433   256799


Q ss_pred             EEeCC
Q 001310          559 EWNES  563 (1103)
Q Consensus       559 iwd~~  563 (1103)
                      ++|+.
T Consensus       271 lydi~  275 (783)
T KOG1008|consen  271 LYDIC  275 (783)
T ss_pred             Eeccc
Confidence            99875

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.40  E-value=0.15  Score=54.56  Aligned_cols=231  Identities=11%  Similarity=0.123  Sum_probs=130.9

Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe----
Q 001310          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF----  481 (1103)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~----  481 (1103)
                      ..++.|+.|..+| +.+++........   .. .+...|..+...++-+  .++.-+ |+.++++++..-......    
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~---~i-~~~~~I~ql~vl~~~~--~llvLs-d~~l~~~~L~~l~~~~~~~~~~   76 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPT---RI-LKLSSITQLSVLPELN--LLLVLS-DGQLYVYDLDSLEPVSTSAPLA   76 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccce---eE-eecceEEEEEEecccC--EEEEEc-CCccEEEEchhhcccccccccc
Confidence            3678999999999 9999993322222   11 2333499999999877  444444 599999998754433311    


Q ss_pred             ----------ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC-----CeeEEecCCCccEEEEEEccCCCEEEE
Q 001310          482 ----------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-----GARVDYDAPGLGCTRMAYSANGRRLFS  546 (1103)
Q Consensus       482 ----------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-----~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1103)
                                ......+...+......+...+.......|.+|.+...     .....+... ..+..++|.  ++.++.
T Consensus        77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-~~~~~i~~~--~~~i~v  153 (275)
T PF00780_consen   77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-DPPSSIAFL--GNKICV  153 (275)
T ss_pred             ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-CCcEEEEEe--CCEEEE
Confidence                      11223344443112223334444555568888887763     222333333 567788888  566666


Q ss_pred             EecCCCCceeEEEEeCCCCeeEEEEecccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--E
Q 001310          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--T  615 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~  615 (1103)
                      +...     ...+.|+.++.....+.....         ...++..+.. +++.+|++-  +..-.+.|. .|+..+  .
T Consensus       154 ~~~~-----~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv~~-~G~~~r~~~  224 (275)
T PF00780_consen  154 GTSK-----GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFVNK-NGEPSRKST  224 (275)
T ss_pred             EeCC-----ceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEEcC-CCCcCcccE
Confidence            6532     288899987766554432210         0123434444 345555543  222233343 444333  2


Q ss_pred             EcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccc
Q 001310          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1103)
                      +.-.   .....+++.  ..+++..+. +.|.||++.+++.++.+..
T Consensus       225 i~W~---~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~i~~  265 (275)
T PF00780_consen  225 IQWS---SAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQTIPL  265 (275)
T ss_pred             EEcC---CchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEEEEC
Confidence            2222   124566664  447776666 5599999999988887764

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.35  E-value=0.074  Score=58.29  Aligned_cols=174  Identities=17%  Similarity=0.162  Sum_probs=102.7

Q ss_pred             CeEEEEEcCCceeeEEecCCC-CCeeEE---EEcCC---CCCEEEEEeC----------CCeEEEEEcCCc----eeEEE
Q 001310          823 GVISLYIVMTFKTILTIMPPS-PTATSL---AFNPH---DNNVIAIGMD----------DSTILIYNARSS----EVISK  881 (1103)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~-~~i~~l---~~s~~---d~~~lasg~~----------dg~v~iwd~~~~----~~~~~  881 (1103)
                      ..|++.|..+.+.+.++.-.. ..++++   .+..+   ...++++|+.          .|.|.++++...    ..+..
T Consensus         2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~   81 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL   81 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred             cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence            357888888877776654322 344443   34331   1468887753          289999999984    12222


Q ss_pred             e--ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc-eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCC
Q 001310          882 L--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET  957 (1103)
Q Consensus       882 l--~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~-~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~  957 (1103)
                      +  ....++|++++-- +++ |+.+. .+.|.+|++...+ ...........       .+.++.  ..+.++++| ...
T Consensus        82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~-------~i~sl~--~~~~~I~vgD~~~  149 (321)
T PF03178_consen   82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPF-------YITSLS--VFKNYILVGDAMK  149 (321)
T ss_dssp             EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSS-------SEEEEE--EETTEEEEEESSS
T ss_pred             EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceE-------EEEEEe--ccccEEEEEEccc
Confidence            2  2257889998766 444 44433 4779999999877 44433332221       244444  446688887 345


Q ss_pred             eEEEE--ECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          958 HLAIY--EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       958 ~v~iw--d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      .+.++  +....+....-.......++++.|-.|+..++++..+|.+.++...
T Consensus       150 sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~  202 (321)
T PF03178_consen  150 SVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN  202 (321)
T ss_dssp             SEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred             CEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence            55555  5533323222122236678999998777789999999999999886

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.23  E-value=0.1  Score=55.54  Aligned_cols=214  Identities=11%  Similarity=0.037  Sum_probs=125.6

Q ss_pred             EEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-c
Q 001310          448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-D  526 (1103)
Q Consensus       448 ~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~  526 (1103)
                      .|.++... ++.+--..+.|.-||..+|+.. .+. +.+.+.++... + .+..|+++..  -+.+++.++......+ .
T Consensus        31 ~w~~~~~~-L~w~DI~~~~i~r~~~~~g~~~-~~~-~p~~~~~~~~~-d-~~g~Lv~~~~--g~~~~~~~~~~~~t~~~~  103 (307)
T COG3386          31 VWDPDRGA-LLWVDILGGRIHRLDPETGKKR-VFP-SPGGFSSGALI-D-AGGRLIACEH--GVRLLDPDTGGKITLLAE  103 (307)
T ss_pred             cCcCCCCE-EEEEeCCCCeEEEecCCcCceE-EEE-CCCCcccceee-c-CCCeEEEEcc--ccEEEeccCCceeEEecc
Confidence            45666664 4455556778888887766432 222 22223333321 2 2234444432  2344555544442221 1


Q ss_pred             C----CCccEEEEEEccCCCEEEEEec-----CC--CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE
Q 001310          527 A----PGLGCTRMAYSANGRRLFSCGT-----SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1103)
Q Consensus       527 ~----~~~~i~~~~~s~dg~~l~~~~~-----~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  595 (1103)
                      .    .....+.....|+|.+.+....     ..  ...+.++.+|. .+..++.+..+-   ..-+.++|+||++.++.
T Consensus       104 ~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~---~~~NGla~SpDg~tly~  179 (307)
T COG3386         104 PEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDL---TIPNGLAFSPDGKTLYV  179 (307)
T ss_pred             ccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcE---EecCceEECCCCCEEEE
Confidence            1    1124567788999988776544     11  22345666665 566666666644   46788999999988877


Q ss_pred             EeC-CCcEEEEECCC--Ce---eEEEEcCCCCCCCCceEEEecCCCEEEEEECCC-eEEEEEcCCCCeeEecccccccee
Q 001310          596 AGD-DHVIKIWDMNK--VQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANEN-RIKILETPESNSVDAAGVLSDNLR  668 (1103)
Q Consensus       596 ~~~-dg~i~iwd~~~--~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg-~i~iw~~~~~~~~~~~~~~~~~i~  668 (1103)
                      +.. .+.|..|++..  +.   ..............-.++...+|.+.+++..+| .|..|+.. ++.+..+..+...++
T Consensus       180 aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t  258 (307)
T COG3386         180 ADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPT  258 (307)
T ss_pred             EeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCc
Confidence            654 47788887752  11   111111111123346788888998886555554 89999988 888888888777777


Q ss_pred             eeEEe
Q 001310          669 KLSVN  673 (1103)
Q Consensus       669 ~~~~~  673 (1103)
                      +++|.
T Consensus       259 ~~~Fg  263 (307)
T COG3386         259 NPAFG  263 (307)
T ss_pred             cceEe
Confidence            77776

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.22  E-value=0.089  Score=55.99  Aligned_cols=224  Identities=15%  Similarity=0.096  Sum_probs=134.8

Q ss_pred             EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCe
Q 001310          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1103)
Q Consensus       340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~  419 (1103)
                      -.|.|+...++.+--..+.|.-|+..+|+...                    +. +.+.+.++..-.++..|+++ ..| 
T Consensus        30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~-~~g-   86 (307)
T COG3386          30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIAC-EHG-   86 (307)
T ss_pred             ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEE-ccc-
Confidence            35778887777777778999999998775432                    11 23344555555555556555 233 


Q ss_pred             EEEEEecCCCccccceEec-cc-cccEEEEEEecCCCceEEEEEcC------C---CceEEEeCC-CCceeEEeecCCCc
Q 001310          420 VQLYAYHGGSDARQQLEID-AH-VGNVNDLAFSAPCKQISVITCGD------D---KTIKVWDAV-TGSRTYSFEGHGAP  487 (1103)
Q Consensus       420 i~iwd~~~~~~~~~~~~l~-~h-~~~v~~~~~s~d~~~~~l~s~~~------d---~~i~iwd~~-~~~~~~~~~~~~~~  487 (1103)
                      +.+++.+++.......... +. ...-+.+...|+|.  +.++...      +   ..-.+|-+. .+..++.+..+-..
T Consensus        87 ~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~--~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~  164 (307)
T COG3386          87 VRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR--IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI  164 (307)
T ss_pred             cEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC--EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence            6777776655422211111 11 23567888999998  3333222      0   112344444 56666666666666


Q ss_pred             eEEEEeeecCCccEEEEE-ECCCeEEEEEcCCC-----C--eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          488 VYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSL-----G--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~-----~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      -+.++|+|  |++.++.+ +..+.|..|+++..     .  .........+..-.++...+|.+-+++...   ...|..
T Consensus       165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~---g~~v~~  239 (307)
T COG3386         165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWG---GGRVVR  239 (307)
T ss_pred             cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccC---CceEEE
Confidence            78889966  55455554 45588888887631     1  122233334556678888889888644321   235999


Q ss_pred             EeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEe
Q 001310          560 WNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG  597 (1103)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  597 (1103)
                      |+.. |+.+..+..+.   ..+.+++|. ++.+.|++.+
T Consensus       240 ~~pd-G~l~~~i~lP~---~~~t~~~FgG~~~~~L~iTs  274 (307)
T COG3386         240 FNPD-GKLLGEIKLPV---KRPTNPAFGGPDLNTLYITS  274 (307)
T ss_pred             ECCC-CcEEEEEECCC---CCCccceEeCCCcCEEEEEe
Confidence            9988 99999988875   566777775 4455555544

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.22  E-value=0.12  Score=56.69  Aligned_cols=217  Identities=13%  Similarity=0.060  Sum_probs=119.9

Q ss_pred             CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC----CCEEEEEeC---------C-CeEEE
Q 001310          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLGVAYS---------K-HIVQL  422 (1103)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g~~las~~~---------d-~~i~i  422 (1103)
                      ..|+|.|..+.+.+..+.++               -..+-..+..+.|..+    ..+|++|+.         . |.|.+
T Consensus         2 s~i~l~d~~~~~~~~~~~l~---------------~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v   66 (321)
T PF03178_consen    2 SSIRLVDPTTFEVLDSFELE---------------PNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILV   66 (321)
T ss_dssp             -EEEEEETTTSSEEEEEEEE---------------TTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEE
T ss_pred             cEEEEEeCCCCeEEEEEECC---------------CCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEE
Confidence            45888998888877765543               1112223344455543    578888753         2 88999


Q ss_pred             EEecCC----CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEe-ecCCCceEEEEeeec
Q 001310          423 YAYHGG----SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSF-EGHGAPVYSLCPHAK  496 (1103)
Q Consensus       423 wd~~~~----~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~-~~~~~~v~~~~~~~~  496 (1103)
                      +++...    ..++.... ....++|.+++-- ++.  ++++.  .+.|.+|++...+ ....- ......+.++...  
T Consensus        67 ~~i~~~~~~~~~l~~i~~-~~~~g~V~ai~~~-~~~--lv~~~--g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~--  138 (321)
T PF03178_consen   67 FEISESPENNFKLKLIHS-TEVKGPVTAICSF-NGR--LVVAV--GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF--  138 (321)
T ss_dssp             EEECSS-----EEEEEEE-EEESS-EEEEEEE-TTE--EEEEE--TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE--
T ss_pred             EEEEcccccceEEEEEEE-EeecCcceEhhhh-CCE--EEEee--cCEEEEEEccCcccchhhheecceEEEEEEecc--
Confidence            999984    22332222 2456789888866 343  33333  4689999998887 33322 1223355666542  


Q ss_pred             CCccEEEEEECCCeEEEEEcCCCCeeE---EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-------C-
Q 001310          497 ENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-------G-  565 (1103)
Q Consensus       497 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-------~-  565 (1103)
                        +.+++.|+....+.++.++......   ........++++.|-++++.++.+-    ..+.+.++....       + 
T Consensus       139 --~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D----~~gnl~~l~~~~~~~~~~~~~  212 (321)
T PF03178_consen  139 --KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGD----KDGNLFVLRYNPEIPNSRDGD  212 (321)
T ss_dssp             --TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEE----TTSEEEEEEE-SS-SSTTTTT
T ss_pred             --ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEc----CCCeEEEEEECCCCccccccc
Confidence              3489999998888888666533322   2223355688888887777666553    255576665542       2 


Q ss_pred             -eeEEEEecccccCCceEEE---EEcC--CC------CEEEEEeCCCcEEE
Q 001310          566 -AIKRTYQGLQLQHNSVSVV---HFDT--AK------DQILAAGDDHVIKI  604 (1103)
Q Consensus       566 -~~~~~~~~~~~~~~~v~~~---~~~~--~~------~~l~~~~~dg~i~i  604 (1103)
                       +......-|-  ...|+++   .+.|  .+      ..++.++.+|.|..
T Consensus       213 ~~L~~~~~f~l--g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  213 PKLERISSFHL--GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV  261 (321)
T ss_dssp             TBEEEEEEEE---SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred             ccceeEEEEEC--CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence             2222222222  2456665   4344  11      13667777777763

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]

Probab=97.21  E-value=0.00011  Score=80.20  Aligned_cols=203  Identities=12%  Similarity=0.096  Sum_probs=129.9

Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee--EEecCCCccEEEEEEcc-CCCEEEEEecCCCCceeEEEEeCC
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR--VDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      .+.+++.....+...++.|..+|.|.+-.++.....  .....+...+++++|++ |.+.||++-.....+..+.|||+.
T Consensus        58 y~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~  137 (783)
T KOG1008|consen   58 YVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDIN  137 (783)
T ss_pred             CceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecc
Confidence            344555444445567888889999998877654433  34455666889999998 677788776555567779999998


Q ss_pred             CC--eeE--EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC-eeEEEEcCCCCCCCCceEEEec-CCCEE
Q 001310          564 EG--AIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV-QLLTTIDAGGGLPENPRICFNK-NGTLL  637 (1103)
Q Consensus       564 ~~--~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~g~~l  637 (1103)
                      ++  .+.  ..+.+..  .....+++|-.+.+.+++|.....+.++|++.. .....+.    +..+..+..+| .++++
T Consensus       138 s~ltvPke~~~fs~~~--l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svn----Tk~vqG~tVdp~~~nY~  211 (783)
T KOG1008|consen  138 SLLTVPKESPLFSSST--LDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVN----TKYVQGITVDPFSPNYF  211 (783)
T ss_pred             cccCCCcccccccccc--ccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhh----hhhcccceecCCCCCce
Confidence            77  221  2222211  245568888888888999999999999998732 1112221    22366788888 77777


Q ss_pred             EEEECCCeEEEEEcCCC--CeeEecccc----ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310          638 AVIANENRIKILETPES--NSVDAAGVL----SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1103)
Q Consensus       638 ~~~~~dg~i~iw~~~~~--~~~~~~~~~----~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1103)
                      ++-. ||.|.+||..-.  .++..+...    ...+..+++.|..                    .|...+..-..++|+
T Consensus       212 cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr--------------------tglla~l~RdS~tIr  270 (783)
T KOG1008|consen  212 CSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR--------------------TGLLAVLSRDSITIR  270 (783)
T ss_pred             eccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC--------------------cchhhhhccCcceEE
Confidence            7666 899999994321  222222222    2247778888753                    233333344456788


Q ss_pred             ccccc
Q 001310          712 VEKPL  716 (1103)
Q Consensus       712 ~w~~~  716 (1103)
                      ++++.
T Consensus       271 lydi~  275 (783)
T KOG1008|consen  271 LYDIC  275 (783)
T ss_pred             Eeccc
Confidence            88765

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.17  E-value=0.25  Score=54.54  Aligned_cols=84  Identities=12%  Similarity=0.248  Sum_probs=58.9

Q ss_pred             ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCC-----------------CE
Q 001310          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-----------------DQ  592 (1103)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-----------------~~  592 (1103)
                      ..+.+++.+|++++.++.    |.-|+|.++|+.++..++.++|..  +..+.-+.....+                 .+
T Consensus       308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYR--dAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~  381 (415)
T PF14655_consen  308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYR--DAQCGWIEVPEEGDRDRSNSNSPKSSSRFALF  381 (415)
T ss_pred             ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCc--cceEEEEEeecccccccccccccCCCCcceEE
Confidence            357889999998877764    447789999999999999998876  2222222111111                 12


Q ss_pred             E-EEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310          593 I-LAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1103)
Q Consensus       593 l-~~~~~dg~i~iwd~~~~~~~~~~~~~  619 (1103)
                      | +-+-..|.|.||++..|..+..+...
T Consensus       382 LvIyaprRg~lEvW~~~~g~Rv~a~~v~  409 (415)
T PF14655_consen  382 LVIYAPRRGILEVWSMRQGPRVAAFNVG  409 (415)
T ss_pred             EEEEeccCCeEEEEecCCCCEEEEEEeC
Confidence            2 33668899999999999888777643

>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.16  E-value=0.0023  Score=66.89  Aligned_cols=105  Identities=14%  Similarity=0.254  Sum_probs=85.7

Q ss_pred             HHHHHHHHhhhhcChhHHHHHHHHhcCCCh----------hHHHHHHHhcCcCHHHHHHHhccCC-CcCCcccccchhhh
Q 001310            7 DLVFLILQFLNEEGFTESAHMLERESRFYF----------DMKFFEDMILDGKWEDVEQYLSSFT-KVDDNRYSTKIYFE   75 (1103)
Q Consensus         7 e~~rli~q~L~~~g~~~s~~~L~~Es~~~~----------~~~~~~~~i~~g~w~~~~~~l~~~~-~~~~~~~~~~~~~~   75 (1103)
                      .|...|..++...|..+.+..|-+|+|...          ++.++-++|.+||-..|++.+.+.. .+.+.  ..++-|.
T Consensus       118 ~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~--~s~LE~~  195 (394)
T KOG2817|consen  118 VLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEK--SSSLEFK  195 (394)
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccc--cccHHHH
Confidence            357889999999999999999999999864          2788899999999999999987642 22322  2237899


Q ss_pred             hhhhhhhhhhcCCCHH--HHHHHHHhhccccCCCCHHHHH
Q 001310           76 IRKQNFFEALDGHDIA--KALNILKKDLKDFAPGNEELFK  113 (1103)
Q Consensus        76 ~~~q~~~Ell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~  113 (1103)
                      +..+.|++++..|...  +|+...|+.++|+........+
T Consensus       196 Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQ  235 (394)
T KOG2817|consen  196 LHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQ  235 (394)
T ss_pred             HHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHH
Confidence            9999999999999888  9999999999999765543333

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=97.08  E-value=0.1  Score=57.62  Aligned_cols=82  Identities=11%  Similarity=0.212  Sum_probs=58.6

Q ss_pred             EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEE-EEEccC-----------------C
Q 001310          837 LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG-LVFSDA-----------------L  898 (1103)
Q Consensus       837 ~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~-l~~s~d-----------------g  898 (1103)
                      ..+......+.+++.+| ++++.|+.+.-|.|.++|+.++..++.++|-.+.=.. +.....                 .
T Consensus       301 ~~l~D~~R~~~~i~~sP-~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~  379 (415)
T PF14655_consen  301 FGLPDSKREGESICLSP-SGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFA  379 (415)
T ss_pred             EeeccCCceEEEEEECC-CCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcce
Confidence            34555667789999999 8999999888899999999999988888875542211 111111                 1


Q ss_pred             CE-EEEEeCCCeEEEEEcCCCc
Q 001310          899 NI-LVSSGGDAQIFVWDVDGWG  919 (1103)
Q Consensus       899 ~~-l~s~s~dg~I~iwd~~~~~  919 (1103)
                      .+ ++-+-.-|.|.||.+..|.
T Consensus       380 l~LvIyaprRg~lEvW~~~~g~  401 (415)
T PF14655_consen  380 LFLVIYAPRRGILEVWSMRQGP  401 (415)
T ss_pred             EEEEEEeccCCeEEEEecCCCC
Confidence            12 3345678899999998866

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=97.05  E-value=0.0023  Score=70.52  Aligned_cols=94  Identities=20%  Similarity=0.380  Sum_probs=72.6

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE-EEEECCCCCEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-RVVWSPDGSLLGV  413 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~~~~spdg~~las  413 (1103)
                      ..|..+.|+|.-. ++|.+..+|.|.+..+. .+++-+                   +.-|...++ +++|.|||+.||+
T Consensus        21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRlwt-------------------ip~p~~~v~~sL~W~~DGkllaV   79 (665)
T KOG4640|consen   21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRLWT-------------------IPIPGENVTASLCWRPDGKLLAV   79 (665)
T ss_pred             cceEEEEEcCccc-hhheeccCCcEEEEEec-cceeEe-------------------ccCCCCccceeeeecCCCCEEEE
Confidence            4788999999988 89999999999999887 444433                   333666666 9999999999999


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEec
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA  451 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~  451 (1103)
                      |-.||+|++-|++++..+...  +..-...|.++-|++
T Consensus        80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~~  115 (665)
T KOG4640|consen   80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWDR  115 (665)
T ss_pred             EecCCeEEEEEccCCCceecc--ccccccchheeeccc
Confidence            999999999999998755431  122344566666653

>PRK10115 protease 2; Provisional

Probab=97.04  E-value=0.85  Score=55.28  Aligned_cols=245  Identities=9%  Similarity=0.026  Sum_probs=122.1

Q ss_pred             ccEEEEEECCCCCEEEEEeCC-----CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-----Cc
Q 001310          397 VSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KT  466 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~  466 (1103)
                      -.+..+.|||||++||.+...     ..|++-|+.+|+.+..  .+.+-   -..++|++|++. ++++...+     ..
T Consensus       127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~~---~~~~~w~~D~~~-~~y~~~~~~~~~~~~  200 (686)
T PRK10115        127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDNV---EPSFVWANDSWT-FYYVRKHPVTLLPYQ  200 (686)
T ss_pred             EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccCc---ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence            356678999999999987432     2588999988864321  12221   146999999985 33333222     36


Q ss_pred             eEEEeCCCC--ceeEEeecCCCceEEEEeeecCCccEEEEEEC---CCeEEEEEcCC--CCeeEEecCCCccEEEEEEcc
Q 001310          467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDS--LGARVDYDAPGLGCTRMAYSA  539 (1103)
Q Consensus       467 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~--~~~~~~~~~~~~~i~~~~~s~  539 (1103)
                      |+.+++.++  +....+........ +....+.++.+++..+.   ++.+.+++.+.  ................+.  .
T Consensus       201 v~~h~lgt~~~~d~lv~~e~~~~~~-~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~  277 (686)
T PRK10115        201 VWRHTIGTPASQDELVYEEKDDTFY-VSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--H  277 (686)
T ss_pred             EEEEECCCChhHCeEEEeeCCCCEE-EEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--e
Confidence            888888888  33344443333333 32222435555554433   34688888532  222222222222222222  2


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCC-CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEc
Q 001310          540 NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTID  617 (1103)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~  617 (1103)
                      .+..+...+..+.....|...++. .++. ..+..+. ....+..+.+.. +..+++...+|.-+++-+.. +..+..+.
T Consensus       278 ~~~~ly~~tn~~~~~~~l~~~~~~~~~~~-~~l~~~~-~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~~~~~~~~~l~  354 (686)
T PRK10115        278 YQHRFYLRSNRHGKNFGLYRTRVRDEQQW-EELIPPR-ENIMLEGFTLFT-DWLVVEERQRGLTSLRQINRKTREVIGIA  354 (686)
T ss_pred             CCCEEEEEEcCCCCCceEEEecCCCcccC-eEEECCC-CCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEcCCCCceEEec
Confidence            234444444333334456556665 2322 2333331 123677777763 34455566666655554332 22334433


Q ss_pred             CCCCCCCCceEEEe--cCCC-EEEEEEC---CCeEEEEEcCCC
Q 001310          618 AGGGLPENPRICFN--KNGT-LLAVIAN---ENRIKILETPES  654 (1103)
Q Consensus       618 ~~~~~~~v~~v~~s--~~g~-~l~~~~~---dg~i~iw~~~~~  654 (1103)
                      .... ..+..+.++  +++. ++++.+.   -+.+..+|..++
T Consensus       355 ~~~~-~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~  396 (686)
T PRK10115        355 FDDP-AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTG  396 (686)
T ss_pred             CCCC-ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCC
Confidence            2111 112222333  3333 3333332   366777777665

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.028  Score=60.97  Aligned_cols=206  Identities=8%  Similarity=0.039  Sum_probs=128.5

Q ss_pred             EEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCE--E-----EEEeCCCeEEEEEcCCCceeeeeeeecCC
Q 001310          858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNI--L-----VSSGGDAQIFVWDVDGWGIQTCRSLQTPD  930 (1103)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~--l-----~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  930 (1103)
                      +|.++..-..++--|+..|+.+..++-|.+ |.-+.+.|+.+.  |     +.|=.|..|.-||..-.....   +....
T Consensus       348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~k---l~~~q  423 (644)
T KOG2395|consen  348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNK---LAVVQ  423 (644)
T ss_pred             EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcce---eeeee
Confidence            444555556788899999999999997776 777888887532  2     234467778899887422211   11111


Q ss_pred             Ccc-cCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC-
Q 001310          931 GVM-TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS- 1008 (1103)
Q Consensus       931 ~~~-~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~- 1008 (1103)
                      ++. ....-..|.+-..+|..++.+.+|.|++||- .+..-.+.+++-+.+|..|..+.||++++.. .+.++.+-++. 
T Consensus       424 ~kqy~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t~~  501 (644)
T KOG2395|consen  424 SKQYSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDTLI  501 (644)
T ss_pred             ccccccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEEec
Confidence            111 1112345666666676666679999999998 6777677788889999999999999998854 47788887764 


Q ss_pred             -CceeEEeeccccccCCCCCCCceeeEeeccCCceee-----EEEEEC----CCCCcEEEEEecCCcEEEEcc
Q 001310         1009 -NLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP-----HAIAAH----PLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1009 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-----~~~~~~----p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                       .|.-..+.....+...-....+.+-+...|-+.+..     ..++|.    .+ .+.+|+ +..-.+..|++
T Consensus       502 kdg~~~~~~Gf~k~~~~k~p~pk~LkL~PeHlA~~~~~~k~~a~Fs~nTg~g~q-E~tIVt-S~G~f~V~WnL  572 (644)
T KOG2395|consen  502 KDGDYAGKTGFEKFMGNKIPKPKRLKLRPEHLAGIDNEFKGTAKFSFNTGIGAQ-ERTIVT-STGPFSVSWNL  572 (644)
T ss_pred             ccCCccccccccccccccCCCceeeecCHHHhhhhhhhccCceeEEEeccCCcc-eeeEEE-eecceEEEEEh
Confidence             233333333333333333344555555555554321     233332    22 345554 45567888986

>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=96.99  E-value=0.0035  Score=69.21  Aligned_cols=93  Identities=16%  Similarity=0.166  Sum_probs=76.5

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEE-EEEEccCCCEEEEEeCCCeEEEEEcCCCceee
Q 001310          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQT  922 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~  922 (1103)
                      ..+.-+.|+| .-.++|++..+|.|.+..+. .+.+.++.-|...++ +++|-|||+.||.|-.||+|++-|+..+....
T Consensus        21 ~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   21 INIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             cceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            4677889999 88899999999999999998 778888887777777 99999999999999999999999999977544


Q ss_pred             eeeeecCCCcccCCCCceEEEEc
Q 001310          923 CRSLQTPDGVMTLAPSETHIQFH  945 (1103)
Q Consensus       923 ~~~~~~~~~~~~~~~~v~~l~fs  945 (1103)
                      .......       ..|..+-|+
T Consensus        99 ~~~~s~e-------~~is~~~w~  114 (665)
T KOG4640|consen   99 SFLFSVE-------TDISKGIWD  114 (665)
T ss_pred             ccccccc-------cchheeecc
Confidence            3211111       257777776

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=96.95  E-value=0.46  Score=48.43  Aligned_cols=185  Identities=9%  Similarity=0.096  Sum_probs=116.6

Q ss_pred             CeeEEEEecCCCEEEEEc-C--CeEEEEEcCCceeeEEecCCCC-CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001310          804 AVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1103)
                      -...+.|..+|.++-+.+ .  ..|+.+|+.+++......-... ---.++..  ++++......++...+||..+-+.+
T Consensus        46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~~  123 (264)
T PF05096_consen   46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKKI  123 (264)
T ss_dssp             EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEEE
T ss_pred             cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceEE
Confidence            345688888888888776 3  4699999999988766543332 23445554  4567777788999999999999988


Q ss_pred             EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCe
Q 001310          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH  958 (1103)
Q Consensus       880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~  958 (1103)
                      .++.- .+.=..++  .||+.|+.......|..+|..+-+......+.......   ..+.-+.+- +|...|=. ....
T Consensus       124 ~~~~y-~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv---~~LNELE~i-~G~IyANVW~td~  196 (264)
T PF05096_consen  124 GTFPY-PGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPV---SNLNELEYI-NGKIYANVWQTDR  196 (264)
T ss_dssp             EEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE------EEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEec-CCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEEC---CCcEeEEEE-cCEEEEEeCCCCe
Confidence            88863 35556677  46777777777778999998886654433333221111   245556665 56555544 6778


Q ss_pred             EEEEECCCceEEEEeeC-----------CC---CcCeEEEEEccCCCEEEEEe
Q 001310          959 LAIYEAEELTCLKQWFP-----------IS---SVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       959 v~iwd~~~~~~~~~~~~-----------~h---~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      |...|..+|+....+-.           .+   ..-...+++.|....|.+.+
T Consensus       197 I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG  249 (264)
T PF05096_consen  197 IVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG  249 (264)
T ss_dssp             EEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred             EEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence            88899999998775311           01   34578899988765544433

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>smart00320 WD40 WD40 repeats

Probab=96.89  E-value=0.0027  Score=43.30  Aligned_cols=39  Identities=36%  Similarity=0.622  Sum_probs=34.6

Q ss_pred             ceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310          876 SEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1103)
Q Consensus       876 ~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd  914 (1103)
                      ++....+..|...|.++.|++++.++++++.|+.+++|+
T Consensus         2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            345667778999999999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.84  E-value=0.18  Score=52.57  Aligned_cols=147  Identities=17%  Similarity=0.150  Sum_probs=92.3

Q ss_pred             CCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEE-cCCceeE
Q 001310          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN-ARSSEVI  879 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd-~~~~~~~  879 (1103)
                      ..+.+.++++|++.+|...  ++.-.+|-...+....... ....++...|++ ++.+.+....+...+++. ..+++..
T Consensus        24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             ccccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCcce
Confidence            3688999999999888776  5554444444444333332 334788889999 677777777777777774 3333322


Q ss_pred             -EEecc--CCCCEEEEEEccCCCEEEEEe---CCCeEEEEEcCCCcee----eeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310          880 -SKLEG--HSKRVTGLVFSDALNILVSSG---GDAQIFVWDVDGWGIQ----TCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1103)
Q Consensus       880 -~~l~~--h~~~V~~l~~s~dg~~l~s~s---~dg~I~iwd~~~~~~~----~~~~~~~~~~~~~~~~~v~~l~fs~dg~  949 (1103)
                       ..+..  -.+.|.++.+||||..+|...   .++.|.+=-+......    ....+......   ...+..++|.+++.
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~---~~~v~~v~W~~~~~  178 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPL---LSDVTDVAWSDDST  178 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccc---cCcceeeeecCCCE
Confidence             12221  122899999999999988766   3567777655432211    11112222111   13689999999999


Q ss_pred             EEEEE
Q 001310          950 RFLLV  954 (1103)
Q Consensus       950 ~l~~~  954 (1103)
                      +++.+
T Consensus       179 L~V~~  183 (253)
T PF10647_consen  179 LVVLG  183 (253)
T ss_pred             EEEEe
Confidence            88875

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PRK10115 protease 2; Provisional

Probab=96.77  E-value=2.2  Score=51.83  Aligned_cols=244  Identities=10%  Similarity=0.014  Sum_probs=121.3

Q ss_pred             CceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .+..+.+||||++++.+.+.+|    .+++-|+.+|+.+.. .                 +.   ..-..++|++|++.|
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~-~-----------------i~---~~~~~~~w~~D~~~~  186 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE-L-----------------LD---NVEPSFVWANDSWTF  186 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc-c-----------------cc---CcceEEEEeeCCCEE
Confidence            5777899999996555544444    588999988864422 0                 11   111459999999987


Q ss_pred             EEEeCC------CeEEEEEecCCCccccceEeccccccEE-EEEEecCCCceEEEEEc-CCCceEEEeCC--CCceeEEe
Q 001310          412 GVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVN-DLAFSAPCKQISVITCG-DDKTIKVWDAV--TGSRTYSF  481 (1103)
Q Consensus       412 as~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~-~~~~s~d~~~~~l~s~~-~d~~i~iwd~~--~~~~~~~~  481 (1103)
                      +....+      ..|..+++.++..-.. ..+........ .+..+.|++.+++.+.+ .++.+.+++..  ++.....+
T Consensus       187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~-lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~  265 (686)
T PRK10115        187 YYVRKHPVTLLPYQVWRHTIGTPASQDE-LVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFL  265 (686)
T ss_pred             EEEEecCCCCCCCEEEEEECCCChhHCe-EEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEE
Confidence            776442      3577888887721111 12222222233 33344478753332222 33578888843  34422222


Q ss_pred             ecCCCceEEEEeeecCCccEEEEEECC-C--eEEEEEcCC-CCeeEEecC-CCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310          482 EGHGAPVYSLCPHAKENIHFIFSISVD-G--KIKAWLYDS-LGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1103)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d-g--~i~iwd~~~-~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1103)
                      ....+....+. +.  ++.+++....+ .  .|...++.. .+....+.. ....+..+.+.  +++|+..... .+...
T Consensus       266 ~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~~-~g~~~  339 (686)
T PRK10115        266 PRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEERQ-RGLTS  339 (686)
T ss_pred             ECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEEe-CCEEE
Confidence            22222222222 21  22233332221 2  343344442 222222333 23367777776  4455544432 34566


Q ss_pred             EEEEeCCCCeeEEEEe-cccccCCceEEEEEc--CCCC-EEEEEe---CCCcEEEEECCCCe
Q 001310          557 LVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD--TAKD-QILAAG---DDHVIKIWDMNKVQ  611 (1103)
Q Consensus       557 i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~  611 (1103)
                      +++++..++. +..+. ...   ..+..+.++  +++. .+++.+   .-+.++.+|..+++
T Consensus       340 l~~~~~~~~~-~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~  397 (686)
T PRK10115        340 LRQINRKTRE-VIGIAFDDP---AYVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE  397 (686)
T ss_pred             EEEEcCCCCc-eEEecCCCC---ceEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence            7888865443 33333 111   223333344  3334 333332   45778888888764

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.76  E-value=0.45  Score=49.68  Aligned_cols=146  Identities=16%  Similarity=0.128  Sum_probs=88.9

Q ss_pred             CeeEEEEcCCCCCEEEEEe---CCCeEEEEEcCCceeEEE-eccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE-cCCCc
Q 001310          845 TATSLAFNPHDNNVIAIGM---DDSTILIYNARSSEVISK-LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD-VDGWG  919 (1103)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~~~~~-l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd-~~~~~  919 (1103)
                      .+.+.++++ +++.+|...   ....++++..  +..... +.+.  .+..-.|++++...+....+...+++. ...+.
T Consensus        25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~~g~--~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~   99 (253)
T PF10647_consen   25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPA--GGPVRPVLTGG--SLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGT   99 (253)
T ss_pred             cccceEECC-CCCeEEEEEEcCCCCEEEEEcC--CCcceeeccCC--ccccccccCCCCEEEEEcCCCceEEEEecCCCc
Confidence            688999999 676666544   3335555543  333333 2333  678889999988777777677677774 33333


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe----CCeEEEEECC---Cc--eEE---EEeeCCCCcCeEEEEEc
Q 001310          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE---EL--TCL---KQWFPISSVPISQATFS  987 (1103)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~v~iwd~~---~~--~~~---~~~~~~h~~~v~~l~fs  987 (1103)
                      ... ..+......    ..|..+.+||||..+|...    ++.|++--+.   .+  ..+   ..+.......++.+.|.
T Consensus       100 ~~~-~~v~~~~~~----~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~  174 (253)
T PF10647_consen  100 GEP-VEVDWPGLR----GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWS  174 (253)
T ss_pred             cee-EEecccccC----CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeec
Confidence            221 112222110    1599999999999999842    6777776543   33  111   11122235688999999


Q ss_pred             cCCCEEEEEecCC
Q 001310          988 CDCRMVFTSFVDG 1000 (1103)
Q Consensus       988 ~dg~~l~t~~~dg 1000 (1103)
                      +++.+++.+...+
T Consensus       175 ~~~~L~V~~~~~~  187 (253)
T PF10647_consen  175 DDSTLVVLGRSAG  187 (253)
T ss_pred             CCCEEEEEeCCCC
Confidence            9998877665433

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>smart00320 WD40 WD40 repeats

Probab=96.72  E-value=0.0031  Score=43.03  Aligned_cols=38  Identities=26%  Similarity=0.436  Sum_probs=33.0

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWD  363 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd  363 (1103)
                      .....+..|...|.++.|+|++. ++++|+.|+.+++||
T Consensus         3 ~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~d~~~~~~~   40 (40)
T smart00320        3 ELLKTLKGHTGPVTSVAFSPDGK-YLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEEecCCceeEEEECCCCC-EEEEecCCCeEEEcC
Confidence            34566778999999999999997 789999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=96.70  E-value=2.4  Score=51.46  Aligned_cols=205  Identities=13%  Similarity=0.145  Sum_probs=119.8

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCc--------eEEEEeee--------------cCCccEEEEEECCCeEEEE
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAP--------VYSLCPHA--------------KENIHFIFSISVDGKIKAW  514 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~--------v~~~~~~~--------------~~~~~~l~s~~~dg~i~iw  514 (1103)
                      .++.++.++.|.-.|..+|+.+.++......        .+.+++..              ...+..++.++.|+.+.-.
T Consensus       196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL  275 (764)
T TIGR03074       196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL  275 (764)
T ss_pred             EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence            4666777888888888888888766432211        11222221              1233478888899999999


Q ss_pred             EcCCCCeeEEecCCCc------------cEEEEEEcc--CCCEEEEEecCCC------CceeEEEEeCCCCeeEEEEecc
Q 001310          515 LYDSLGARVDYDAPGL------------GCTRMAYSA--NGRRLFSCGTSKE------GESFLVEWNESEGAIKRTYQGL  574 (1103)
Q Consensus       515 d~~~~~~~~~~~~~~~------------~i~~~~~s~--dg~~l~~~~~~~~------~~~~i~iwd~~~~~~~~~~~~~  574 (1103)
                      |.++++....+.....            ....+.-+|  .+..+++++...+      ..+.|+-+|..+|+.+-.+...
T Consensus       276 DA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~~~g  355 (764)
T TIGR03074       276 DADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAWDPG  355 (764)
T ss_pred             ECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEEecC
Confidence            9999888765532111            000111122  1334555543222      2678999999999988776531


Q ss_pred             ccc--------------CCce-EEEEEcCCCCEEEEEe------------------CCCcEEEEECCCCeeEEEEcCCCC
Q 001310          575 QLQ--------------HNSV-SVVHFDTAKDQILAAG------------------DDHVIKIWDMNKVQLLTTIDAGGG  621 (1103)
Q Consensus       575 ~~~--------------~~~v-~~~~~~~~~~~l~~~~------------------~dg~i~iwd~~~~~~~~~~~~~~~  621 (1103)
                      ...              ...+ ...++.++...++.+.                  ..+.|.-.|.++|+..-.++...+
T Consensus       356 ~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~~~h  435 (764)
T TIGR03074       356 NPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQTVHH  435 (764)
T ss_pred             CCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecccCC
Confidence            100              0011 2345555555554422                  224566678888888876654211


Q ss_pred             C-------CCCceEEEec-CCC---EEEEEECCCeEEEEEcCCCCeeEecc
Q 001310          622 L-------PENPRICFNK-NGT---LLAVIANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       622 ~-------~~v~~v~~s~-~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                      .       ....-+.+.. +|+   .++.++.+|.+.++|..+++.+....
T Consensus       436 D~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       436 DLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             ccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            0       0111122333 563   78999999999999999998876554

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=96.69  E-value=1.1  Score=47.46  Aligned_cols=157  Identities=10%  Similarity=0.017  Sum_probs=82.7

Q ss_pred             CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC-Cc
Q 001310          841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WG  919 (1103)
Q Consensus       841 ~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~-~~  919 (1103)
                      ...+.+..+..++ |+++++++.......-||--...-...-..-+..|.+|.|+||+.+.+.+ ..|.|+.=+... .+
T Consensus       142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~  219 (302)
T PF14870_consen  142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE  219 (302)
T ss_dssp             S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred             CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence            3456788888898 89999888765555677644322122222246789999999998776644 888888877222 11


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeC--CCCcCeEEEEEccCCCEEEEEe
Q 001310          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--ISSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~--~h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      .-...........    -.+..++|.+++...|++..|.+. ...+.|+.=..-..  .-......+.|..+.+-++. +
T Consensus       220 ~w~~~~~~~~~~~----~~~ld~a~~~~~~~wa~gg~G~l~-~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~l-G  293 (302)
T PF14870_consen  220 TWSEPIIPIKTNG----YGILDLAYRPPNEIWAVGGSGTLL-VSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVL-G  293 (302)
T ss_dssp             EE---B-TTSS------S-EEEEEESSSS-EEEEESTT-EE-EESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--
T ss_pred             ccccccCCcccCc----eeeEEEEecCCCCEEEEeCCccEE-EeCCCCccceECccccCCCCceEEEEEcCCCceEEE-C
Confidence            1111011111111    147899999999999998888554 34454543322121  22556888999877666665 5


Q ss_pred             cCCcEEEE
Q 001310          998 VDGTLSIH 1005 (1103)
Q Consensus       998 ~dg~v~vW 1005 (1103)
                      .+|.+.-|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            78887655

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.57  E-value=0.061  Score=63.88  Aligned_cols=146  Identities=14%  Similarity=0.130  Sum_probs=97.9

Q ss_pred             CCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc-eEEEEeeec---CCccEEEEEECCCeEEEEEcCCCCee-EEec-
Q 001310          453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP-VYSLCPHAK---ENIHFIFSISVDGKIKAWLYDSLGAR-VDYD-  526 (1103)
Q Consensus       453 ~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~-v~~~~~~~~---~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~-  526 (1103)
                      .+.++|........|+-.|+++|+.+..+..|... |..++....   -...-.+.|-.++.+..||.+-.... .... 
T Consensus       492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~  571 (794)
T PF08553_consen  492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS  571 (794)
T ss_pred             ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence            33435555566788999999999999999888755 777654211   01234667778888999998865422 2111 


Q ss_pred             ---CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310          527 ---APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1103)
Q Consensus       527 ---~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  603 (1103)
                         .......|++-+.+| ++|+|+.    +|-|++||--..+....+.+..   .+|..+..+.||+++++.+. ..+.
T Consensus       572 k~Y~~~~~Fs~~aTt~~G-~iavgs~----~G~IRLyd~~g~~AKT~lp~lG---~pI~~iDvt~DGkwilaTc~-tyLl  642 (794)
T PF08553_consen  572 KQYSSKNNFSCFATTEDG-YIAVGSN----KGDIRLYDRLGKRAKTALPGLG---DPIIGIDVTADGKWILATCK-TYLL  642 (794)
T ss_pred             cccccCCCceEEEecCCc-eEEEEeC----CCcEEeecccchhhhhcCCCCC---CCeeEEEecCCCcEEEEeec-ceEE
Confidence               233467888888777 4556655    4459999954333334445544   89999999999999988774 4555


Q ss_pred             EEEC
Q 001310          604 IWDM  607 (1103)
Q Consensus       604 iwd~  607 (1103)
                      +++.
T Consensus       643 Li~t  646 (794)
T PF08553_consen  643 LIDT  646 (794)
T ss_pred             EEEE
Confidence            6654

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.51  E-value=1.7  Score=47.57  Aligned_cols=113  Identities=23%  Similarity=0.276  Sum_probs=59.1

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC----CCEE
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLL  411 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g~~l  411 (1103)
                      ..+.|+|.|||+ ++++ ...|.|.+++ ..+.....  +  -++        ..+..........++++|+    +.+.
T Consensus         3 ~P~~~a~~pdG~-l~v~-e~~G~i~~~~-~~g~~~~~--v--~~~--------~~v~~~~~~gllgia~~p~f~~n~~lY   67 (331)
T PF07995_consen    3 NPRSMAFLPDGR-LLVA-ERSGRIWVVD-KDGSLKTP--V--ADL--------PEVFADGERGLLGIAFHPDFASNGYLY   67 (331)
T ss_dssp             SEEEEEEETTSC-EEEE-ETTTEEEEEE-TTTEECEE--E--EE---------TTTBTSTTBSEEEEEE-TTCCCC-EEE
T ss_pred             CceEEEEeCCCc-EEEE-eCCceEEEEe-CCCcCcce--e--ccc--------ccccccccCCcccceeccccCCCCEEE
Confidence            568999999997 5555 5589999999 55543110  0  000        0123445678899999994    4433


Q ss_pred             EEEeCC--------CeEEEEEecCCC-ccc---cc-eEecc---ccccEEEEEEecCCCceEEEEEcCCC
Q 001310          412 GVAYSK--------HIVQLYAYHGGS-DAR---QQ-LEIDA---HVGNVNDLAFSAPCKQISVITCGDDK  465 (1103)
Q Consensus       412 as~~~d--------~~i~iwd~~~~~-~~~---~~-~~l~~---h~~~v~~~~~s~d~~~~~l~s~~~d~  465 (1103)
                      ++.+..        ..|.-|....+. .+.   .+ ..+..   ....-..|+|.|||.  +.++.+..+
T Consensus        68 v~~t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~--LYvs~G~~~  135 (331)
T PF07995_consen   68 VYYTNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGK--LYVSVGDGG  135 (331)
T ss_dssp             EEEEEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSE--EEEEEB-TT
T ss_pred             EEEEcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCc--EEEEeCCCC
Confidence            443321        245556555441 111   00 01111   222456799999995  455555443

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>PHA02713 hypothetical protein; Provisional

Probab=96.44  E-value=0.27  Score=58.02  Aligned_cols=195  Identities=9%  Similarity=-0.010  Sum_probs=103.5

Q ss_pred             CCCEEEEEeCC------CeEEEEEcCCcee--EEEeccCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCcee
Q 001310          855 DNNVIAIGMDD------STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQ  921 (1103)
Q Consensus       855 d~~~lasg~~d------g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~I~iwd~~~~~~~  921 (1103)
                      ++.+.++|+.+      ..+..||..+.+-  +..+........  +..-+|++.+.||.++     .+..||..+.+..
T Consensus       303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~--~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~  380 (557)
T PHA02713        303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFS--LAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK  380 (557)
T ss_pred             CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhcee--EEEECCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence            66788888754      3578888877642  222221111111  2233688888888764     4788998876543


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eC-----------------------CeEEEEECCCceEEEEeeCCC
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE-----------------------THLAIYEAEELTCLKQWFPIS  977 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d-----------------------~~v~iwd~~~~~~~~~~~~~h  977 (1103)
                      ....+......      ...+  .-+|++.++| .+                       ..+..||..+.+-... ..-.
T Consensus       381 ~~~~mp~~r~~------~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v-~~m~  451 (557)
T PHA02713        381 MLPDMPIALSS------YGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETL-PNFW  451 (557)
T ss_pred             ECCCCCccccc------ccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeec-CCCC
Confidence            32222222211      1122  2367766665 22                       2477888877654322 1111


Q ss_pred             CcCeEEEEEccCCCEEEEEecC------CcEEEEeCCC-ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEEC
Q 001310          978 SVPISQATFSCDCRMVFTSFVD------GTLSIHEASN-LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAH 1050 (1103)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~~~d------g~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 1050 (1103)
                      ......-+..-+|+..+.||.+      ..+..||..+ .+....-    .++...         .+++.      +.. 
T Consensus       452 ~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~----~m~~~r---------~~~~~------~~~-  511 (557)
T PHA02713        452 TGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELIT----TTESRL---------SALHT------ILH-  511 (557)
T ss_pred             cccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEcc----ccCccc---------cccee------EEE-
Confidence            1122222234567777777754      2467788887 4443111    111111         01111      122 


Q ss_pred             CCCCcEEEEEecCC--cEEEEccCCCCCCCccCCcc
Q 001310         1051 PLKPTQFAVGLTNG--EVYVIEPNEPGDTWAVLPPD 1084 (1103)
Q Consensus      1051 p~~~~~l~~~~~dg--~v~vw~~~~~~~~w~~~~~~ 1084 (1103)
                        ++.+.++||.||  ++-.||+  ...+|....|-
T Consensus       512 --~~~iyv~Gg~~~~~~~e~yd~--~~~~W~~~~~~  543 (557)
T PHA02713        512 --DNTIMMLHCYESYMLQDTFNV--YTYEWNHICHQ  543 (557)
T ss_pred             --CCEEEEEeeecceeehhhcCc--ccccccchhhh
Confidence              278888999898  6777777  55678766554

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.43  E-value=2.1  Score=47.59  Aligned_cols=276  Identities=13%  Similarity=0.113  Sum_probs=151.3

Q ss_pred             CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec-----CCCEEEE
Q 001310          745 GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK-----NDAYLFS  819 (1103)
Q Consensus       745 ~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~-----d~~~l~~  819 (1103)
                      +...+++|+..|.++||+-......+.                 ..+...     .-..+|..++.-+     +...||+
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~-----------------~lllE~-----~l~~PILqv~~G~F~s~~~~~~LaV   93 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPE-----------------DLLLET-----QLKDPILQVECGKFVSGSEDLQLAV   93 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCc-----------------cEEEEE-----ecCCcEEEEEeccccCCCCcceEEE
Confidence            345789999999999998533221111                 001111     1345666655432     3457777


Q ss_pred             EcCCeEEEEEcCC--ce-------eeEEecCCC--CCeeEEEEcCC----CCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001310          820 ASGGVISLYIVMT--FK-------TILTIMPPS--PTATSLAFNPH----DNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1103)
Q Consensus       820 ~~dg~i~iwd~~~--~~-------~~~~~~~~~--~~i~~l~~s~~----d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1103)
                      -.-.++.+|.+..  |.       .+..+..|.  .....+++-|-    +..++++-+.||++.+|+-+.......+.+
T Consensus        94 LhP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~  173 (418)
T PF14727_consen   94 LHPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD  173 (418)
T ss_pred             ecCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC
Confidence            7778888888731  11       112222222  22233333321    246899999999999999776554444544


Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc---------------------eeeeeeeecCCCcccCCCCceEEE
Q 001310          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG---------------------IQTCRSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~---------------------~~~~~~~~~~~~~~~~~~~v~~l~  943 (1103)
                       .--...+++.+.-..+++++.+..+.-|....-.                     ......+..-+..    -.+..+.
T Consensus       174 -~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~----l~i~v~~  248 (418)
T PF14727_consen  174 -FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQA----LDIQVVR  248 (418)
T ss_pred             -CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCcee----EEEEEEE
Confidence             2223447788888889999999888888753200                     0000001111100    1233444


Q ss_pred             EcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEc----cCCC---EEEEEecCCcEEEEeCCCceeEEee
Q 001310          944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS----CDCR---MVFTSFVDGTLSIHEASNLEVQCRI 1016 (1103)
Q Consensus       944 fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs----~dg~---~l~t~~~dg~v~vWd~~~~~~~~~~ 1016 (1103)
                      ++.....+++-.+.++...+.. |.......- .-.+.....|.    .++.   .+++++.++++.||.=.+..+.+..
T Consensus       249 ~~~~~~~IvvLger~Lf~l~~~-G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l  326 (418)
T PF14727_consen  249 FSSSESDIVVLGERSLFCLKDN-GSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQL  326 (418)
T ss_pred             cCCCCceEEEEecceEEEEcCC-CeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCC
Confidence            5555555666566777777764 554433221 11111111222    1222   4788889999999986655555444


Q ss_pred             ccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1017 LSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1017 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      .      +               .+| ++.++.-++-...|++-+.+|.+.+-=+
T Consensus       327 ~------~---------------~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YL  359 (418)
T PF14727_consen  327 P------H---------------VPV-ALSVANFNGLKGLIVSLSDEGQLSVSYL  359 (418)
T ss_pred             C------C---------------CCE-EEEecccCCCCceEEEEcCCCcEEEEEe
Confidence            3      1               113 2344433333678999999999887655

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.42  E-value=0.95  Score=46.21  Aligned_cols=205  Identities=16%  Similarity=0.238  Sum_probs=124.1

Q ss_pred             cccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe
Q 001310          732 VKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS  811 (1103)
Q Consensus       732 ~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s  811 (1103)
                      +-...+.++.|+|+.+.|++......-.|+=                      ...|..+.+..+.+   -.....+++.
T Consensus        83 g~~~nvS~LTynp~~rtLFav~n~p~~iVEl----------------------t~~GdlirtiPL~g---~~DpE~Ieyi  137 (316)
T COG3204          83 GETANVSSLTYNPDTRTLFAVTNKPAAIVEL----------------------TKEGDLIRTIPLTG---FSDPETIEYI  137 (316)
T ss_pred             cccccccceeeCCCcceEEEecCCCceEEEE----------------------ecCCceEEEecccc---cCChhHeEEe
Confidence            3445599999999999999888775554432                      33444455555543   3445567888


Q ss_pred             cCCCEEEEEc-CCeEEEEEcCCceeeEE-------ec--CC-CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce---
Q 001310          812 KNDAYLFSAS-GGVISLYIVMTFKTILT-------IM--PP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE---  877 (1103)
Q Consensus       812 ~d~~~l~~~~-dg~i~iwd~~~~~~~~~-------~~--~~-~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~---  877 (1103)
                      .+|+++++-. ++.+.++.+........       +.  .+ +...-.+||+| .++.|..+-+-.-+.||.+..+.   
T Consensus       138 g~n~fvi~dER~~~l~~~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~-~~~~l~~aKEr~P~~I~~~~~~~~~l  216 (316)
T COG3204         138 GGNQFVIVDERDRALYLFTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDP-VDHRLFVAKERNPIGIFEVTQSPSSL  216 (316)
T ss_pred             cCCEEEEEehhcceEEEEEEcCCccEEeccceEEeccccCCCCcCceeeecCC-CCceEEEEEccCCcEEEEEecCCccc
Confidence            8888887765 67787777664422211       11  12 45678899999 66677777777777777665332   


Q ss_pred             eEEEeccCC-------CCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310          878 VISKLEGHS-------KRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1103)
Q Consensus       878 ~~~~l~~h~-------~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  949 (1103)
                      .+.....++       ..|.++.|.+ .+.+|+-+.+++.+...|....-........-..|-...-.....++..++|.
T Consensus       217 ~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~  296 (316)
T COG3204         217 SVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGN  296 (316)
T ss_pred             ccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEeccCCCCCcccCCCcceeEECCCCC
Confidence            111111122       3467788875 45667777778888888877643222112222222221112456788888888


Q ss_pred             EEEEEeCCeEEEE
Q 001310          950 RFLLVHETHLAIY  962 (1103)
Q Consensus       950 ~l~~~~d~~v~iw  962 (1103)
                      +-+++..+-.+.+
T Consensus       297 lYIvSEPnlfy~F  309 (316)
T COG3204         297 LYIVSEPNLFYRF  309 (316)
T ss_pred             EEEEecCCcceec
Confidence            8777765544443

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.39  E-value=0.1  Score=44.91  Aligned_cols=102  Identities=13%  Similarity=0.111  Sum_probs=64.8

Q ss_pred             ceEEEe---cCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          337 PMSMDF---HPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       337 V~~v~~---spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      |+++++   ..||+.-|++||.|..|+||+=+  +.+..  +                  .-.+.|++++-... .+++.
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--i------------------~e~~~v~~L~~~~~-~~F~Y   58 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--I------------------TETDKVTSLCSLGG-GRFAY   58 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--E------------------ecccceEEEEEcCC-CEEEE
Confidence            455555   45666679999999999999943  33322  1                  14567888877766 66889


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEe---cCCCceEEEEEcCCCceE
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS---APCKQISVITCGDDKTIK  468 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s---~d~~~~~l~s~~~d~~i~  468 (1103)
                      +..+|+|-+|+-...     ....+... .+.++++.   .||.. -|++|-.+|.|-
T Consensus        59 ~l~NGTVGvY~~~~R-----lWRiKSK~-~~~~~~~~D~~gdG~~-eLI~GwsnGkve  109 (111)
T PF14783_consen   59 ALANGTVGVYDRSQR-----LWRIKSKN-QVTSMAFYDINGDGVP-ELIVGWSNGKVE  109 (111)
T ss_pred             EecCCEEEEEeCcce-----eeeeccCC-CeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence            999999999976431     11222222 25555443   34443 578887787664

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.37  E-value=0.67  Score=50.37  Aligned_cols=237  Identities=12%  Similarity=0.110  Sum_probs=111.9

Q ss_pred             CCcEEEEee-cCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--
Q 001310          745 GGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--  821 (1103)
Q Consensus       745 ~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--  821 (1103)
                      +.++|++.+ .++.|.|.|+......          +++..+...+.+...     ..-.....+-.-|+|+.++++-  
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~----------P~l~KvIe~~ev~~k-----~g~s~PHT~Hclp~G~imIS~lGd  150 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRK----------PRLHKVIEPEEVFEK-----TGLSRPHTVHCLPDGRIMISALGD  150 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-----------EEEEEE-HHHHHHH-----H-EEEEEEEEE-SS--EEEEEEEE
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCC----------CceEeeeCHHHHHhh-----cCCCCCceeeecCCccEEEEeccC
Confidence            456677766 5688999998754321          222211111000000     0011122344457898888762  


Q ss_pred             -C----CeEEEEEcCCceeeEEecCCC---CCeeEEEEcCCCCCEEEEEe--------------------CCCeEEEEEc
Q 001310          822 -G----GVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGM--------------------DDSTILIYNA  873 (1103)
Q Consensus       822 -d----g~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~--------------------~dg~v~iwd~  873 (1103)
                       +    |.+.+.|-++.+.........   ..-..+-+.| ..+.+++..                    ...++.+||+
T Consensus       151 ~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~  229 (461)
T PF05694_consen  151 ADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDW  229 (461)
T ss_dssp             TTS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEET
T ss_pred             CCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEEC
Confidence             1    458899998888877765422   2335567778 667777743                    2358999999


Q ss_pred             CCceeEEEeccCC--CCEEEEEEccC--CCE-EEEEeCCCeEEEE-EcCCCceeeeeeeecCCCcc-------------c
Q 001310          874 RSSEVISKLEGHS--KRVTGLVFSDA--LNI-LVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVM-------------T  934 (1103)
Q Consensus       874 ~~~~~~~~l~~h~--~~V~~l~~s~d--g~~-l~s~s~dg~I~iw-d~~~~~~~~~~~~~~~~~~~-------------~  934 (1103)
                      .+.+.++++.--.  .....+.|..+  ..+ ++.+.-..+|..| ..+.++-...+++..+....             .
T Consensus       230 ~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~  309 (461)
T PF05694_consen  230 STRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGA  309 (461)
T ss_dssp             TTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-E
T ss_pred             CCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCccccccccccccc
Confidence            9999998887422  23556777644  433 3333334445444 33556655555555543211             0


Q ss_pred             CCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCc---eEEEEeeCCC---------------CcCeEEEEEccCCCEEE
Q 001310          935 LAPSETHIQFHKDQTRFLLV--HETHLAIYEAEEL---TCLKQWFPIS---------------SVPISQATFSCDCRMVF  994 (1103)
Q Consensus       935 ~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~---~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~  994 (1103)
                      ...-|+.+..|.|.++|.++  ..|.|+.||+.+.   +++.++..+-               .+...-+..|-||+.|.
T Consensus       310 ~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlY  389 (461)
T PF05694_consen  310 VPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLY  389 (461)
T ss_dssp             E------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEE
T ss_pred             CCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEE
Confidence            02357999999999999996  7899999999764   3443333221               22346688999999887


Q ss_pred             EEe
Q 001310          995 TSF  997 (1103)
Q Consensus       995 t~~  997 (1103)
                      +.+
T Consensus       390 vTn  392 (461)
T PF05694_consen  390 VTN  392 (461)
T ss_dssp             EE-
T ss_pred             EEe
Confidence            654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PHA02713 hypothetical protein; Provisional

Probab=96.36  E-value=0.23  Score=58.55  Aligned_cols=201  Identities=8%  Similarity=-0.032  Sum_probs=99.1

Q ss_pred             CCCceEEEEEcCC------CceEEEeCCCCcee--EEeecCCCceEEEEeeecCCccEEEEEECCC-----eEEEEEcCC
Q 001310          452 PCKQISVITCGDD------KTIKVWDAVTGSRT--YSFEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDS  518 (1103)
Q Consensus       452 d~~~~~l~s~~~d------~~i~iwd~~~~~~~--~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~  518 (1103)
                      ++.  +.+.||.+      ..+..||+.++.-.  ..+.........+.+    ++.+.+.|+.++     .+..||..+
T Consensus       303 ~~~--IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~----~g~IYviGG~~~~~~~~sve~Ydp~~  376 (557)
T PHA02713        303 DNE--IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVI----DDTIYAIGGQNGTNVERTIECYTMGD  376 (557)
T ss_pred             CCE--EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEE----CCEEEEECCcCCCCCCceEEEEECCC
Confidence            555  56666643      34778887766422  111111111112222    556777777654     377888776


Q ss_pred             CCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC-------------------ceeEEEEeCCCCeeEEEEecccccCC
Q 001310          519 LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-------------------ESFLVEWNESEGAIKRTYQGLQLQHN  579 (1103)
Q Consensus       519 ~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~-------------------~~~i~iwd~~~~~~~~~~~~~~~~~~  579 (1103)
                      .+-...-..........+..-+|+..+.|+.++..                   ...+..||..+.+-...-.-.. ...
T Consensus       377 ~~W~~~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~-~r~  455 (557)
T PHA02713        377 DKWKMLPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT-GTI  455 (557)
T ss_pred             CeEEECCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc-ccc
Confidence            54322111111111111223367777776643210                   2458889988776533222111 011


Q ss_pred             ceEEEEEcCCCCEEEEEeCC------CcEEEEECCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC--eEEEEE
Q 001310          580 SVSVVHFDTAKDQILAAGDD------HVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--RIKILE  650 (1103)
Q Consensus       580 ~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg--~i~iw~  650 (1103)
                      ....++  -++...+.||.+      ..+..||..+ .+-...-...........++  -+|+..++|+.++  .+..||
T Consensus       456 ~~~~~~--~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~--~~~~iyv~Gg~~~~~~~e~yd  531 (557)
T PHA02713        456 RPGVVS--HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL--HDNTIMMLHCYESYMLQDTFN  531 (557)
T ss_pred             cCcEEE--ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE--ECCEEEEEeeecceeehhhcC
Confidence            111222  245555566643      2467899887 44433222222211222222  2688889998888  677788


Q ss_pred             cCCCCeeEecccc
Q 001310          651 TPESNSVDAAGVL  663 (1103)
Q Consensus       651 ~~~~~~~~~~~~~  663 (1103)
                      ..+.+.......|
T Consensus       532 ~~~~~W~~~~~~~  544 (557)
T PHA02713        532 VYTYEWNHICHQH  544 (557)
T ss_pred             cccccccchhhhc
Confidence            8777555443333

>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.33  E-value=0.099  Score=56.93  Aligned_cols=144  Identities=13%  Similarity=0.152  Sum_probs=96.0

Q ss_pred             CCCEEE-EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceE-----EEEEcCCCceEEEeCCC-Cc-ee
Q 001310          407 DGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS-----VITCGDDKTIKVWDAVT-GS-RT  478 (1103)
Q Consensus       407 dg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~-----l~s~~~d~~i~iwd~~~-~~-~~  478 (1103)
                      +..+|+ ++.....++--|++.|+.+.   ++.-|.. |+-+.+.|+.+.-.     -+.|-.|..|.-||.+- +. .+
T Consensus       344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl  419 (644)
T KOG2395|consen  344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL  419 (644)
T ss_pred             ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence            445544 34445568888999998766   4555555 88888888764211     13355678899999763 22 23


Q ss_pred             EEeecCC----CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCc
Q 001310          479 YSFEGHG----APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1103)
Q Consensus       479 ~~~~~~~----~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1103)
                      ..-++|.    ....|.+-  ..+ .+|+.||.+|.||+||--......-+++-+.+|..+..+.||+++++.+     +
T Consensus       420 ~~~q~kqy~~k~nFsc~aT--T~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~  491 (644)
T KOG2395|consen  420 AVVQSKQYSTKNNFSCFAT--TES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K  491 (644)
T ss_pred             eeeeccccccccccceeee--cCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence            3333332    23344443  334 4899999999999999744445556788888999999999999998765     4


Q ss_pred             eeEEEEeC
Q 001310          555 SFLVEWNE  562 (1103)
Q Consensus       555 ~~i~iwd~  562 (1103)
                      .++.+.++
T Consensus       492 tyLlLi~t  499 (644)
T KOG2395|consen  492 TYLLLIDT  499 (644)
T ss_pred             cEEEEEEE
Confidence            45666654

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=96.32  E-value=0.21  Score=55.60  Aligned_cols=159  Identities=13%  Similarity=0.114  Sum_probs=91.3

Q ss_pred             CCeeEEEEcCCCCCEEEEEe--CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCC----CEEEEEeCCCeEEEEEcCC
Q 001310          844 PTATSLAFNPHDNNVIAIGM--DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~--~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg----~~l~s~s~dg~I~iwd~~~  917 (1103)
                      .++..++|.. +.+.+.+.-  .+|.+++=|   .+.+.+|+    .|..+.|+|-+    ..|...-.-+.|.||-+..
T Consensus        20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~   91 (671)
T PF15390_consen   20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP   91 (671)
T ss_pred             ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence            4788899984 444444332  334433322   23444444    48899999853    3455566778899999874


Q ss_pred             CceeeeeeeecCCCcc--cCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEE
Q 001310          918 WGIQTCRSLQTPDGVM--TLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1103)
Q Consensus       918 ~~~~~~~~~~~~~~~~--~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1103)
                      ......+.+.......  +.+.-...+.|+|....|++ .....=.++++.........-..-.+.|-+.+|..||+.|+
T Consensus        92 s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLV  171 (671)
T PF15390_consen   92 STTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLV  171 (671)
T ss_pred             CccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEE
Confidence            3222222222211111  11123467899999999998 44443344555432222211223478899999999999887


Q ss_pred             EEec-CCcEEEEeCCCc
Q 001310          995 TSFV-DGTLSIHEASNL 1010 (1103)
Q Consensus       995 t~~~-dg~v~vWd~~~~ 1010 (1103)
                      ++-. .=.-++||-...
T Consensus       172 VAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  172 VAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EEeCCeEEEEEecCchh
Confidence            7642 234678886543

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=96.31  E-value=1.8  Score=48.14  Aligned_cols=285  Identities=11%  Similarity=0.093  Sum_probs=147.0

Q ss_pred             CCEEEEEeCCCcEEEEECCCCe-----eEEEEcCCCCCCCCceEEEe---c--CCCEEEEEECCCeEEEEEcCCC--C--
Q 001310          590 KDQILAAGDDHVIKIWDMNKVQ-----LLTTIDAGGGLPENPRICFN---K--NGTLLAVIANENRIKILETPES--N--  655 (1103)
Q Consensus       590 ~~~l~~~~~dg~i~iwd~~~~~-----~~~~~~~~~~~~~v~~v~~s---~--~g~~l~~~~~dg~i~iw~~~~~--~--  655 (1103)
                      ...|++||..|.++||+...+.     .+-..+..   .+|..+..-   +  +...||+ -.-..+.+|.+...  .  
T Consensus        37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~---~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~  112 (418)
T PF14727_consen   37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLK---DPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVE  112 (418)
T ss_pred             ccEEEEeccccEEEEEccCCCCCCCccEEEEEecC---CcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcc
Confidence            4689999999999999986533     22222222   345555433   2  2334554 44467888876311  1  


Q ss_pred             -----eeEeccccc--cceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310          656 -----SVDAAGVLS--DNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1103)
Q Consensus       656 -----~~~~~~~~~--~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1103)
                           .+.....|.  .....+.+.|.+.                 ...-..+..-+.||.+.+++-+...    ....+
T Consensus       113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg-----------------~~~~~~IcVQS~DG~L~~feqe~~~----f~~~l  171 (418)
T PF14727_consen  113 HGNQYQLELIYEHSLQRTAYNMCCGPFGG-----------------VKGRDFICVQSMDGSLSFFEQESFA----FSRFL  171 (418)
T ss_pred             cCcEEEEEEEEEEecccceeEEEEEECCC-----------------CCCceEEEEEecCceEEEEeCCcEE----EEEEc
Confidence                 111111111  1112222222221                 1224567778899999999865321    12222


Q ss_pred             cCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccc----------ccccCCeeecCCCCCceeeccCCC
Q 001310          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA----------TTKVPPRLYQPRHGPQFMVNDTTD  798 (1103)
Q Consensus       729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~  798 (1103)
                      +..-..   ..+.+.+....+++++.+..+.-|+...-........          ....-..-|...-|+...      
T Consensus       172 p~~llP---gPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l------  242 (418)
T PF14727_consen  172 PDFLLP---GPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQAL------  242 (418)
T ss_pred             CCCCCC---cCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeE------
Confidence            221122   2467888888899999998888888654322111110          111122334444444222      


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEE------cCCCCCEEEEEeCCCeEEEEE
Q 001310          799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF------NPHDNNVIAIGMDDSTILIYN  872 (1103)
Q Consensus       799 ~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~------s~~d~~~lasg~~dg~v~iwd  872 (1103)
                           .+..+.++.....+++-+..++.+.+-. |......+-.-.+.....|      .+..+..+++++.++++.||.
T Consensus       243 -----~i~v~~~~~~~~~IvvLger~Lf~l~~~-G~l~~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~  316 (418)
T PF14727_consen  243 -----DIQVVRFSSSESDIVVLGERSLFCLKDN-GSLRFQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE  316 (418)
T ss_pred             -----EEEEEEcCCCCceEEEEecceEEEEcCC-CeEEEEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe
Confidence                 2333344444555666666677666653 4433332211111111111      221123588899999999996


Q ss_pred             cCCceeEEEeccCCCCEEEEEE---ccCCCEEEEEeCCCeEEEEEcCC
Q 001310          873 ARSSEVISKLEGHSKRVTGLVF---SDALNILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       873 ~~~~~~~~~l~~h~~~V~~l~~---s~dg~~l~s~s~dg~I~iwd~~~  917 (1103)
                      =  .+++....-...+| ++..   ..-...+++-+.+|.+.+-=+.+
T Consensus       317 d--~~L~WsA~l~~~PV-al~v~~~~~~~G~IV~Ls~~G~L~v~YLGT  361 (418)
T PF14727_consen  317 D--TTLVWSAQLPHVPV-ALSVANFNGLKGLIVSLSDEGQLSVSYLGT  361 (418)
T ss_pred             C--CeEEEecCCCCCCE-EEEecccCCCCceEEEEcCCCcEEEEEeCC
Confidence            3  34444443322333 3333   22346888889999988876665

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=96.25  E-value=0.38  Score=56.61  Aligned_cols=235  Identities=11%  Similarity=0.024  Sum_probs=122.7

Q ss_pred             CCCEEEEEeCC------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC------CceEEEeCCC
Q 001310          407 DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVT  474 (1103)
Q Consensus       407 dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~  474 (1103)
                      .+..+++|+.+      ..+..||..+++-. ....+. +...-.++++.. +.  +.++||.|      .++..||..+
T Consensus       284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-~~a~m~-~~r~~~~~~~~~-~~--lYv~GG~~~~~~~l~~ve~YD~~~  358 (571)
T KOG4441|consen  284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-SLAPMP-SPRCRVGVAVLN-GK--LYVVGGYDSGSDRLSSVERYDPRT  358 (571)
T ss_pred             CCeEEEECCCCCCCcccceeEEecCCcCcEe-ecCCCC-cccccccEEEEC-CE--EEEEccccCCCcccceEEEecCCC
Confidence            45566666655      35888888876321 111222 222234445443 44  77888888      3577888877


Q ss_pred             CceeE--EeecCCCceEEEEeeecCCccEEEEEECCCe-----EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          475 GSRTY--SFEGHGAPVYSLCPHAKENIHFIFSISVDGK-----IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       475 ~~~~~--~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~-----i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      ++-..  .+...........+    +|.+.+.|+.||.     +..||..+.+-...-......-..-...-+|+..++|
T Consensus       359 ~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~G  434 (571)
T KOG4441|consen  359 NQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIG  434 (571)
T ss_pred             CceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEc
Confidence            65322  22111111111111    6678888988875     6667766544332222222112222233467777777


Q ss_pred             ecCCCCc--eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEcCCC
Q 001310          548 GTSKEGE--SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       548 ~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~  620 (1103)
                      +.++..+  ..+..||..+++....-.-.. .+.... ++. -++...+.||.|+     +|..||..+.+....-....
T Consensus       435 G~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~R~~~g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~  511 (571)
T KOG4441|consen  435 GGDGSSNCLNSVECYDPETNTWTLIAPMNT-RRSGFG-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTS  511 (571)
T ss_pred             CcCCCccccceEEEEcCCCCceeecCCccc-ccccce-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcc
Confidence            6555432  568899998876544332222 012222 222 2455666677665     37788888776554432221


Q ss_pred             CCCCCceEEEecCCCEEEEEECCC-----eEEEEEcCCCC
Q 001310          621 GLPENPRICFNKNGTLLAVIANEN-----RIKILETPESN  655 (1103)
Q Consensus       621 ~~~~v~~v~~s~~g~~l~~~~~dg-----~i~iw~~~~~~  655 (1103)
                      ....+..+  .-++...++|+.||     +|..||..+.+
T Consensus       512 ~rs~~g~~--~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~  549 (571)
T KOG4441|consen  512 PRSAVGVV--VLGGKLYAVGGFDGNNNLNTVECYDPETDT  549 (571)
T ss_pred             ccccccEE--EECCEEEEEecccCccccceeEEcCCCCCc
Confidence            11111112  22467778887765     45666665553

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=96.21  E-value=1.7  Score=47.44  Aligned_cols=266  Identities=12%  Similarity=0.041  Sum_probs=112.0

Q ss_pred             CccEEEEEE-CCCeEEEEEcCCCC----eeEEecC---CC----ccEEEEEEccCCCEEEEEecC--CCCceeEEEEeCC
Q 001310          498 NIHFIFSIS-VDGKIKAWLYDSLG----ARVDYDA---PG----LGCTRMAYSANGRRLFSCGTS--KEGESFLVEWNES  563 (1103)
Q Consensus       498 ~~~~l~s~~-~dg~i~iwd~~~~~----~~~~~~~---~~----~~i~~~~~s~dg~~l~~~~~~--~~~~~~i~iwd~~  563 (1103)
                      +.++|+..+ ..++|.|.|..+..    ....+..   ..    .....+..-|+|+.++++-.+  +++.+-+.++|-+
T Consensus        86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~  165 (461)
T PF05694_consen   86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGE  165 (461)
T ss_dssp             -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TT
T ss_pred             cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCc
Confidence            345666655 67889999987432    1222221   00    123345556899998876553  4455678899988


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEe--------------------CCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG--------------------DDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--------------------~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1103)
                      +.+.............--..+.+.|..+.+++..                    .-.++.+||+.+.+.++++.......
T Consensus       166 tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~  245 (461)
T PF05694_consen  166 TFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQ  245 (461)
T ss_dssp             T--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEE
T ss_pred             cccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCC
Confidence            8888777765442223456677888888888754                    23579999999999999998764322


Q ss_pred             CCceEEEec--CCCEEEEEE-CCCeEEEEEc-CCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310          624 ENPRICFNK--NGTLLAVIA-NENRIKILET-PESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1103)
Q Consensus       624 ~v~~v~~s~--~g~~l~~~~-~dg~i~iw~~-~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1103)
                      ....+.|..  +..+=++++ -..+|..|-- ..++... .+     |.  .+.                          
T Consensus       246 ~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a-~k-----Vi--~ip--------------------------  291 (461)
T PF05694_consen  246 MPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAA-EK-----VI--DIP--------------------------  291 (461)
T ss_dssp             EEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEE-EE-----EE--EE---------------------------
T ss_pred             ceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeee-eE-----EE--ECC--------------------------
Confidence            344566654  444433332 3344444433 3332110 00     00  000                          


Q ss_pred             cceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec-CceEEEeecCCCcc-ccccccccc
Q 001310          700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDL-TLSTEATTK  777 (1103)
Q Consensus       700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~vw~~~~~~~-~~~~~~~~~  777 (1103)
                             ...+.-|.+..        +..+...-..-|+.+.+|.|.++|..... .|.++.||+..... ...++....
T Consensus       292 -------~~~v~~~~lp~--------ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lG  356 (461)
T PF05694_consen  292 -------AKKVEGWILPE--------MLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLG  356 (461)
T ss_dssp             --------EE--SS---G--------GGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-B
T ss_pred             -------CcccCcccccc--------cccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEEC
Confidence                   01111121110        00000112345788999999999987776 69999999987543 111111100


Q ss_pred             cCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE
Q 001310          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  820 (1103)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~  820 (1103)
                      ..+.-     +   ......+..-.+....+.+|.||++|...
T Consensus       357 G~~~~-----~---~~~~v~g~~l~GgPqMvqlS~DGkRlYvT  391 (461)
T PF05694_consen  357 GSIRK-----G---DHPVVKGKRLRGGPQMVQLSLDGKRLYVT  391 (461)
T ss_dssp             TTTT------B-----TTS------S----EEE-TTSSEEEEE
T ss_pred             cEecc-----C---CCccccccccCCCCCeEEEccCCeEEEEE
Confidence            00000     0   00001111234456788999999988765

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.11  E-value=0.29  Score=42.23  Aligned_cols=100  Identities=17%  Similarity=0.157  Sum_probs=64.1

Q ss_pred             EEEEEEcc---CC-CEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001310          889 VTGLVFSD---AL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  964 (1103)
Q Consensus       889 V~~l~~s~---dg-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~  964 (1103)
                      |++|++..   || +.|+.|+.|..|++|+=+.       .+....-.    ..|++++-...+++...-.+|+|-+|+-
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e-------~~~Ei~e~----~~v~~L~~~~~~~F~Y~l~NGTVGvY~~   70 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDE-------IVAEITET----DKVTSLCSLGGGRFAYALANGTVGVYDR   70 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCCc-------EEEEEecc----cceEEEEEcCCCEEEEEecCCEEEEEeC
Confidence            66777664   32 6799999999999998765       11111111    2578888888877666668999999975


Q ss_pred             CCceEEEEeeCCCCcCeEEEEEcc---CC-CEEEEEecCCcEE
Q 001310          965 EELTCLKQWFPISSVPISQATFSC---DC-RMVFTSFVDGTLS 1003 (1103)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~---dg-~~l~t~~~dg~v~ 1003 (1103)
                      .  +.+..  ......++++++..   || .-|++|-.+|.|-
T Consensus        71 ~--~RlWR--iKSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   71 S--QRLWR--IKSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             c--ceeee--eccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            3  22222  22233466665443   33 2588888888764

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=96.00  E-value=1.6  Score=47.70  Aligned_cols=104  Identities=14%  Similarity=0.210  Sum_probs=59.4

Q ss_pred             CeeEEEEecCCCEEEEEcCCeEEEEEcCCcee---eEEe----cCCCCCeeEEEEcCC---CCCEEEEEeCC--------
Q 001310          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI----MPPSPTATSLAFNPH---DNNVIAIGMDD--------  865 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~---~~~~----~~~~~~i~~l~~s~~---d~~~lasg~~d--------  865 (1103)
                      ....|+|.|||+++++-..|.|++++ ..+..   +..+    .........++++|+   ++.+.++.+..        
T Consensus         3 ~P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~   81 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND   81 (331)
T ss_dssp             SEEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred             CceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence            35789999999999987789999999 44443   2222    123457799999992   24333333321        


Q ss_pred             CeEEEEEcCCc-------e-eEEEecc---CCCCEEEEEEccCCCEEEEEeCCC
Q 001310          866 STILIYNARSS-------E-VISKLEG---HSKRVTGLVFSDALNILVSSGGDA  908 (1103)
Q Consensus       866 g~v~iwd~~~~-------~-~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~dg  908 (1103)
                      ..|.-|....+       + .+..+..   .......|+|.|||.+.++.+..+
T Consensus        82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence            24444544433       1 1122222   222346699999998888776544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=95.86  E-value=2.6  Score=51.15  Aligned_cols=204  Identities=12%  Similarity=0.097  Sum_probs=120.6

Q ss_pred             CCCEEEEEcCCeEEEEEcCCceeeEEecCCCCC--------eeEEEEcC---------------CCCCEEEEEeCCCeEE
Q 001310          813 NDAYLFSASGGVISLYIVMTFKTILTIMPPSPT--------ATSLAFNP---------------HDNNVIAIGMDDSTIL  869 (1103)
Q Consensus       813 d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~d~~~lasg~~dg~v~  869 (1103)
                      ++...++..++.|.-.|..+|+.+.++......        .+.+++-.               .++..++.++.|+.+.
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li  273 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI  273 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence            454555445788888899999888876532211        12233321               0234788899999999


Q ss_pred             EEEcCCceeEEEeccCCCCEE-------------EEEEcc--CCCEEEEEeC----------CCeEEEEEcCCCceeeee
Q 001310          870 IYNARSSEVISKLEGHSKRVT-------------GLVFSD--ALNILVSSGG----------DAQIFVWDVDGWGIQTCR  924 (1103)
Q Consensus       870 iwd~~~~~~~~~l~~h~~~V~-------------~l~~s~--dg~~l~s~s~----------dg~I~iwd~~~~~~~~~~  924 (1103)
                      -.|..+|+.+..+.. .+.|.             .+.-+|  .+..+++++.          +|.|+-+|+.+|+..-..
T Consensus       274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~  352 (764)
T TIGR03074       274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW  352 (764)
T ss_pred             EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence            999999998877642 22221             011111  1335555542          688999999999876533


Q ss_pred             eeecCCCccc---------CCCCc-eEEEEcCCCCEEEEE-------------------eCCeEEEEECCCceEEEEeeC
Q 001310          925 SLQTPDGVMT---------LAPSE-THIQFHKDQTRFLLV-------------------HETHLAIYEAEELTCLKQWFP  975 (1103)
Q Consensus       925 ~~~~~~~~~~---------~~~~v-~~l~fs~dg~~l~~~-------------------~d~~v~iwd~~~~~~~~~~~~  975 (1103)
                      ....+.....         ....+ ..+++.++..++...                   ..+.|.-.|.++|+....+..
T Consensus       353 ~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~~Q~  432 (764)
T TIGR03074       353 DPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWVFQT  432 (764)
T ss_pred             ecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEEecc
Confidence            2211110000         00011 344566655555441                   124577789999998877554


Q ss_pred             CCC--------cCeEEEEEcc-CCC---EEEEEecCCcEEEEeCCCceeEEeec
Q 001310          976 ISS--------VPISQATFSC-DCR---MVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       976 ~h~--------~~v~~l~fs~-dg~---~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      -|.        ....-+.+.. ||+   .++.++.+|.+.+.|-++|+.+..+.
T Consensus       433 ~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~  486 (764)
T TIGR03074       433 VHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE  486 (764)
T ss_pred             cCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence            331        1111223333 664   78889999999999999999887654

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.75  E-value=2.2  Score=41.79  Aligned_cols=208  Identities=12%  Similarity=0.082  Sum_probs=113.7

Q ss_pred             EEEEcCCCceEEEeCCCCceeE-EeecCCCceEEEEeeecCCc--cEEEEEECCCeEEEEEcCCCCeeE--Ee---c--C
Q 001310          458 VITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAWLYDSLGARV--DY---D--A  527 (1103)
Q Consensus       458 l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~~~~~~~~~~--~~l~s~~~dg~i~iwd~~~~~~~~--~~---~--~  527 (1103)
                      +..-=..+.|.-||+.+.+..+ ++.+.  ++.++.+ |..++  .+.+.++..-.|.-||........  ++   .  .
T Consensus        30 l~VDi~ag~v~r~D~~qn~v~ra~ie~p--~~ag~il-pv~~~~q~~~v~~G~kf~i~nwd~~~~~a~v~~t~~ev~~d~  106 (310)
T KOG4499|consen   30 LYVDIEAGEVHRYDIEQNKVYRAKIEGP--PSAGFIL-PVEGGPQEFAVGCGSKFVIVNWDGVSESAKVYRTLFEVQPDR  106 (310)
T ss_pred             EEEEeccCceehhhhhhhheEEEEEecC--cceeEEE-EecCCCceEEEeecceEEEEEcccccceeeeeeeccccCchH
Confidence            3333345567778887765433 23322  2333332 22222  233333333334557643322222  11   0  1


Q ss_pred             CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc-----cCCceEEEEEcCCCCEEEE-EeCCCc
Q 001310          528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-----QHNSVSVVHFDTAKDQILA-AGDDHV  601 (1103)
Q Consensus       528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~-~~~dg~  601 (1103)
                      ...+.+.-..+|+|++.+ +.....++    .+....+.+..-+.+|+.     .-.--+.++|+.+.+.++. -+.+-+
T Consensus       107 kknR~NDgkvdP~Gryy~-GtMad~~~----~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d~K~fY~iDsln~~  181 (310)
T KOG4499|consen  107 KKNRLNDGKVDPDGRYYG-GTMADFGD----DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSDAKKFYYIDSLNYE  181 (310)
T ss_pred             HhcccccCccCCCCceee-eeeccccc----cccccccEEEEeccCCCceeeehhccCCccccccccCcEEEEEccCceE
Confidence            122455567889999943 33322111    111222332222333320     0133466788877766655 556777


Q ss_pred             EEEEE--CCCCeeE-----EEEcC--CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEE
Q 001310          602 IKIWD--MNKVQLL-----TTIDA--GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSV  672 (1103)
Q Consensus       602 i~iwd--~~~~~~~-----~~~~~--~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~  672 (1103)
                      |.-||  ..+|...     ..+..  .......-.++...+|++.++.-..++|...|..+++.+..+..+...+++++|
T Consensus       182 V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccF  261 (310)
T KOG4499|consen  182 VDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCF  261 (310)
T ss_pred             EeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEe
Confidence            87777  5565432     22211  011122346777888999999999999999999999999999999999999999


Q ss_pred             e
Q 001310          673 N  673 (1103)
Q Consensus       673 ~  673 (1103)
                      .
T Consensus       262 g  262 (310)
T KOG4499|consen  262 G  262 (310)
T ss_pred             c
Confidence            7

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.73  E-value=0.028  Score=66.27  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=78.4

Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      .+..++.|+..|.+-..|+.+.  +.+...-..-.++|++++|+.||+  .++.|-.+|.|.+||..+++.++.+..|..
T Consensus        98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a  173 (1206)
T KOG2079|consen   98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA  173 (1206)
T ss_pred             eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence            4667889998999988888764  222112223456899999999999  789999999999999999999999998988


Q ss_pred             ceEEEEeee-cCCccEEEEEECCCeEEEEEc
Q 001310          487 PVYSLCPHA-KENIHFIFSISVDGKIKAWLY  516 (1103)
Q Consensus       487 ~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~  516 (1103)
                      +..++-++. ..++..++++...|.  +|.+
T Consensus       174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            887775442 333446777777665  4544

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=95.73  E-value=0.01  Score=68.16  Aligned_cols=195  Identities=13%  Similarity=0.089  Sum_probs=114.3

Q ss_pred             CCeEEEEEcCCce-eEEEeccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCC--CceeeeeeeecCCCcccCCCCce
Q 001310          865 DSTILIYNARSSE-VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSET  940 (1103)
Q Consensus       865 dg~v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~  940 (1103)
                      .+.+++-+..+.- ....+++..+.|..++|-.. ...++  -.-|.+.||+++-  |++.....+......-.....|.
T Consensus       110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~  187 (1283)
T KOG1916|consen  110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS  187 (1283)
T ss_pred             hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence            4556666655432 12345667788888888431 11222  3346788998873  55444333333322221112344


Q ss_pred             EEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEE-----------EccCCCEEEEEecCCcEEEEeCC
Q 001310          941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQAT-----------FSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       941 ~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~-----------fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      .+-|-+...++..+ .++.+++...++...  .++.+|+..++.++           .||||+.+|+++.||.++.|.+.
T Consensus       188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~--~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiy  265 (1283)
T KOG1916|consen  188 WCPIAVNKVYICYGLKGGEIRLLNINRALR--SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIY  265 (1283)
T ss_pred             ecccccccceeeeccCCCceeEeeechHHH--HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeee
Confidence            45555667777776 556666655543322  34556877776654           48999999999999999999874


Q ss_pred             -CceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCC-cEEEEcc
Q 001310         1009 -NLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNG-EVYVIEP 1071 (1103)
Q Consensus      1009 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-~v~vw~~ 1071 (1103)
                       +|+..-+.. ..+-+|.  ..+..|+. .|...+..+++.++    .+++++.+-| .+++|.-
T Consensus       266 i~g~~~~rcl-hewkphd--~~p~vC~l-c~~~~~~~v~i~~w----~~~Itttd~nre~k~w~~  322 (1283)
T KOG1916|consen  266 ITGKIVHRCL-HEWKPHD--KHPRVCWL-CHKQEILVVSIGKW----VLRITTTDVNREEKFWAE  322 (1283)
T ss_pred             eeccccHhhh-hccCCCC--CCCceeee-eccccccCCcccee----EEEEecccCCcceeEeec
Confidence             444332222 2233332  34567766 67777776777765    5666666655 5888875

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.65  E-value=0.029  Score=40.08  Aligned_cols=34  Identities=24%  Similarity=0.418  Sum_probs=29.9

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCe
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQK  369 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~  369 (1103)
                      ...|.+++|+|... ++|.|+.+|.|.|+.+ +++.
T Consensus        11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence            34799999999998 8999999999999998 5554

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.58  E-value=3.2  Score=42.46  Aligned_cols=192  Identities=11%  Similarity=0.062  Sum_probs=114.6

Q ss_pred             ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~  814 (1103)
                      .-...+.|..+|..+-+++.-|.-.                    ++.+++.+|+......++   ...--..+++..|.
T Consensus        45 aFTQGL~~~~~g~LyESTG~yG~S~--------------------l~~~d~~tg~~~~~~~l~---~~~FgEGit~~~d~  101 (264)
T PF05096_consen   45 AFTQGLEFLDDGTLYESTGLYGQSS--------------------LRKVDLETGKVLQSVPLP---PRYFGEGITILGDK  101 (264)
T ss_dssp             -EEEEEEEEETTEEEEEECSTTEEE--------------------EEEEETTTSSEEEEEE-T---TT--EEEEEEETTE
T ss_pred             ccCccEEecCCCEEEEeCCCCCcEE--------------------EEEEECCCCcEEEEEECC---ccccceeEEEECCE
Confidence            3456788888888777777766433                    234455666555555543   22333455565555


Q ss_pred             CEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC--C---CCE
Q 001310          815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH--S---KRV  889 (1103)
Q Consensus       815 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h--~---~~V  889 (1103)
                      -+..+--++...+||..+.+.+.++.- .+.=..++.   |++.|+..+....++++|..+.+....+.-.  .   ..+
T Consensus       102 l~qLTWk~~~~f~yd~~tl~~~~~~~y-~~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~L  177 (264)
T PF05096_consen  102 LYQLTWKEGTGFVYDPNTLKKIGTFPY-PGEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNL  177 (264)
T ss_dssp             EEEEESSSSEEEEEETTTTEEEEEEE--SSS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---E
T ss_pred             EEEEEecCCeEEEEccccceEEEEEec-CCcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCc
Confidence            555555689999999999999998864 356667773   5667777777789999998887766555432  1   235


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC-------CcccCCCCceEEEEcCCCCEEEEE
Q 001310          890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV  954 (1103)
Q Consensus       890 ~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~fs~dg~~l~~~  954 (1103)
                      +-|.+. +|...|-.=....|..-|..+|++....-+..+.       .......-...+|+.|.+..+.+.
T Consensus       178 NELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vT  248 (264)
T PF05096_consen  178 NELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVT  248 (264)
T ss_dssp             EEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEE
T ss_pred             EeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEE
Confidence            556665 6777776656667888888888866543222111       111112346889998887766664

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]

Probab=95.58  E-value=7.8  Score=46.80  Aligned_cols=105  Identities=13%  Similarity=0.110  Sum_probs=66.1

Q ss_pred             EEEecCCCEEEEEcCCeEEEEEcCCceeeEEec--CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEecc
Q 001310          808 FALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEG  884 (1103)
Q Consensus       808 l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~  884 (1103)
                      .|+.|-..++.+|-...+++||+...+.++...  .....|+.+.+.   +..+++|+.--.|..+..+. +..+..+..
T Consensus       939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~---~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen  939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY---GARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred             eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEeec---ceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence            456677778888888999999998777766543  235677888874   45778787666565544433 333444433


Q ss_pred             --CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 001310          885 --HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  916 (1103)
Q Consensus       885 --h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~  916 (1103)
                        -...|+++.+- |-..+|.+..=|.+.+-.+.
T Consensus      1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred             CCccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence              22346666654 44566666666666555443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.46  E-value=4.3  Score=43.11  Aligned_cols=153  Identities=16%  Similarity=0.194  Sum_probs=82.0

Q ss_pred             CCCCeeEEEEecCCCEEEEEcCCeE-EEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC-Ccee
Q 001310          801 SQEAVPCFALSKNDAYLFSASGGVI-SLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR-SSEV  878 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~dg~i-~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~  878 (1103)
                      ....+..+..++||++++++..|.+ .-||--...-...-......|.++.|+| ++.+.+. ...|.|+.=+.. ..+.
T Consensus       143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~-~~~lw~~-~~Gg~~~~s~~~~~~~~  220 (302)
T PF14870_consen  143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSP-DGNLWML-ARGGQIQFSDDPDDGET  220 (302)
T ss_dssp             ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-T-TS-EEEE-ETTTEEEEEE-TTEEEE
T ss_pred             CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecC-CCCEEEE-eCCcEEEEccCCCCccc
Confidence            4467888889999999999987664 5676542111122223467999999999 6666554 488888887722 2222


Q ss_pred             EEE----eccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE
Q 001310          879 ISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1103)
Q Consensus       879 ~~~----l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~  954 (1103)
                      -..    ...-.-.+..++|.+++...|+|+ .|. .+...+.|+.=.  ..+...   ..+.-...+.|.++.+-++.|
T Consensus       221 w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~-l~~S~DgGktW~--~~~~~~---~~~~n~~~i~f~~~~~gf~lG  293 (302)
T PF14870_consen  221 WSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGT-LLVSTDGGKTWQ--KDRVGE---NVPSNLYRIVFVNPDKGFVLG  293 (302)
T ss_dssp             E---B-TTSS--S-EEEEEESSSS-EEEEES-TT--EEEESSTTSS-E--E-GGGT---TSSS---EEEEEETTEEEEE-
T ss_pred             cccccCCcccCceeeEEEEecCCCCEEEEeC-Ccc-EEEeCCCCccce--ECcccc---CCCCceEEEEEcCCCceEEEC
Confidence            111    111223478999999988777655 443 345566655211  111111   111247889999888999999


Q ss_pred             eCCeEEEE
Q 001310          955 HETHLAIY  962 (1103)
Q Consensus       955 ~d~~v~iw  962 (1103)
                      .+|.|.-|
T Consensus       294 ~~G~ll~~  301 (302)
T PF14870_consen  294 QDGVLLRY  301 (302)
T ss_dssp             STTEEEEE
T ss_pred             CCcEEEEe
Confidence            99987665

>PRK13684 Ycf48-like protein; Provisional

Probab=95.39  E-value=4.7  Score=44.14  Aligned_cols=156  Identities=11%  Similarity=0.017  Sum_probs=90.2

Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe-ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee
Q 001310          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  921 (1103)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~  921 (1103)
                      ...+..+.+.| ++.+++++. .|.+..-.-..++.-... ..-...++++++.++++.++. +..|.+++=..+.|..-
T Consensus       172 ~g~~~~i~~~~-~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~v-g~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSP-DGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWML-ARGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECC-CCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEE-ecCCEEEEccCCCCCcc
Confidence            45788999999 776666554 565443211222222222 223457899999999887765 45676643334444311


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEee--CCCCcCeEEEEEccCCCEEEEEecC
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFVD  999 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~d  999 (1103)
                      .  .+..+....  ...+.+++|.|++..++++.+|.+.. ..+.|+.-....  ..-......+.|..+++.+++ +..
T Consensus       249 ~--~~~~~~~~~--~~~l~~v~~~~~~~~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~-G~~  322 (334)
T PRK13684        249 S--KPIIPEITN--GYGYLDLAYRTPGEIWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVL-GQR  322 (334)
T ss_pred             c--cccCCcccc--ccceeeEEEcCCCCEEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEE-CCC
Confidence            1  111111100  12477899999999888888886654 445444332211  111345778888877777775 467


Q ss_pred             CcEEEEeC
Q 001310         1000 GTLSIHEA 1007 (1103)
Q Consensus      1000 g~v~vWd~ 1007 (1103)
                      |.|.-|+-
T Consensus       323 G~il~~~~  330 (334)
T PRK13684        323 GVLLRYVG  330 (334)
T ss_pred             ceEEEecC
Confidence            88887763

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=95.36  E-value=0.068  Score=38.17  Aligned_cols=32  Identities=19%  Similarity=0.343  Sum_probs=29.0

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEec
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH  426 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~  426 (1103)
                      ....|.+++|+|...+||.++.+|.|.++.+.
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            34579999999999999999999999999993

>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]

Probab=95.35  E-value=2.5  Score=41.41  Aligned_cols=138  Identities=14%  Similarity=0.095  Sum_probs=78.0

Q ss_pred             cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC--------CceEEEEeeecCCccEEEEEECCCeEE
Q 001310          441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APVYSLCPHAKENIHFIFSISVDGKIK  512 (1103)
Q Consensus       441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v~~~~~~~~~~~~~l~s~~~dg~i~  512 (1103)
                      ..+.+.-..+|+|+  +.+..-.|-.- +.....|..-.-+.+|.        .--+.++|.. ..-.+.+.-+.+-.|.
T Consensus       108 knR~NDgkvdP~Gr--yy~GtMad~~~-~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~-d~K~fY~iDsln~~V~  183 (310)
T KOG4499|consen  108 KNRLNDGKVDPDGR--YYGGTMADFGD-DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDS-DAKKFYYIDSLNYEVD  183 (310)
T ss_pred             hcccccCccCCCCc--eeeeeeccccc-cccccccEEEEeccCCCceeeehhccCCccccccc-cCcEEEEEccCceEEe
Confidence            34566777899999  43322222111 11111222222222332        2234456642 2223455667777788


Q ss_pred             EEEcC--CCC-----eeEEecC----CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCce
Q 001310          513 AWLYD--SLG-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV  581 (1103)
Q Consensus       513 iwd~~--~~~-----~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v  581 (1103)
                      -||.+  ++.     .+..++.    .....-.+++..+|++.+++-.    .++|+..|..+|+.+..+.-..   ..+
T Consensus       184 a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt---~qi  256 (310)
T KOG4499|consen  184 AYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPT---PQI  256 (310)
T ss_pred             eeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCC---Cce
Confidence            88843  222     2222222    1112335666778888877764    4569999999999999998877   889


Q ss_pred             EEEEEcCC
Q 001310          582 SVVHFDTA  589 (1103)
Q Consensus       582 ~~~~~~~~  589 (1103)
                      ++++|...
T Consensus       257 tsccFgGk  264 (310)
T KOG4499|consen  257 TSCCFGGK  264 (310)
T ss_pred             EEEEecCC
Confidence            99999754

>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]

Probab=95.15  E-value=1.3  Score=52.30  Aligned_cols=215  Identities=11%  Similarity=0.083  Sum_probs=116.0

Q ss_pred             CeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-C------CeEEEEEcCCceee--EEecCCCCCeeEEE
Q 001310          780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G------GVISLYIVMTFKTI--LTIMPPSPTATSLA  850 (1103)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d------g~i~iwd~~~~~~~--~~~~~~~~~i~~l~  850 (1103)
                      +..+|+.++.-.....++   ....-.++++. ++...++|+ +      .++..||..+.+=.  ..+...........
T Consensus       303 ve~yd~~~~~w~~~a~m~---~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~  378 (571)
T KOG4441|consen  303 VECYDPKTNEWSSLAPMP---SPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV  378 (571)
T ss_pred             eEEecCCcCcEeecCCCC---cccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE
Confidence            445555555323333332   22223344444 445666665 5      24778887765422  22222222222222


Q ss_pred             EcCCCCCEEEEEeCCC-----eEEEEEcCCce--eEEEeccCCCCEEEEEEccCCCEEEEEeCCC------eEEEEEcCC
Q 001310          851 FNPHDNNVIAIGMDDS-----TILIYNARSSE--VISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFVWDVDG  917 (1103)
Q Consensus       851 ~s~~d~~~lasg~~dg-----~v~iwd~~~~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg------~I~iwd~~~  917 (1103)
                      +   +|.+.|+|+.||     +|..||..+.+  .+..+.........+  .-+|++.++||.|+      ++..||..+
T Consensus       379 l---~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t  453 (571)
T KOG4441|consen  379 L---DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPET  453 (571)
T ss_pred             E---CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCC
Confidence            2   788999999997     67788877654  222222111222222  23688888888665      477889888


Q ss_pred             CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCC-----eEEEEECCCceEEEEeeCCCCcCeEEEE-EccCC
Q 001310          918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHET-----HLAIYEAEELTCLKQWFPISSVPISQAT-FSCDC  990 (1103)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~-----~v~iwd~~~~~~~~~~~~~h~~~v~~l~-fs~dg  990 (1103)
                      ++......+...+...       .++ .-++.+.++ |.|+     +|..||..+.+....-..  ..+...+. ..-++
T Consensus       454 ~~W~~~~~M~~~R~~~-------g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m--~~~rs~~g~~~~~~  523 (571)
T KOG4441|consen  454 NTWTLIAPMNTRRSGF-------GVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPM--TSPRSAVGVVVLGG  523 (571)
T ss_pred             CceeecCCcccccccc-------eEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccC--ccccccccEEEECC
Confidence            7766655555554432       122 334555555 4444     488899887765543111  11222222 22456


Q ss_pred             CEEEEEecCC-----cEEEEeCCCceeE
Q 001310          991 RMVFTSFVDG-----TLSIHEASNLEVQ 1013 (1103)
Q Consensus       991 ~~l~t~~~dg-----~v~vWd~~~~~~~ 1013 (1103)
                      +..++|+.||     +|..||..+.+..
T Consensus       524 ~ly~vGG~~~~~~l~~ve~ydp~~d~W~  551 (571)
T KOG4441|consen  524 KLYAVGGFDGNNNLNTVECYDPETDTWT  551 (571)
T ss_pred             EEEEEecccCccccceeEEcCCCCCcee
Confidence            7778888775     5777877776654

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.07  E-value=4.8  Score=41.37  Aligned_cols=171  Identities=12%  Similarity=0.178  Sum_probs=105.5

Q ss_pred             cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCC
Q 001310          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW  918 (1103)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~  918 (1103)
                      .+....+.++.|+| +.+.|++......-.|+=..+|+.+.++.- --.....+.+..+|++.++--.++.+.++.++.+
T Consensus        82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~  160 (316)
T COG3204          82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD  160 (316)
T ss_pred             ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence            44455699999999 666777666666666776667888877642 1123456888888888888888999999988875


Q ss_pred             ce-eeeeeeecCCCcccC-CCCceEEEEcCCCCEEEEEeCC-eEEEEECCCce-EEE-EeeCCC-------CcCeEEEEE
Q 001310          919 GI-QTCRSLQTPDGVMTL-APSETHIQFHKDQTRFLLVHET-HLAIYEAEELT-CLK-QWFPIS-------SVPISQATF  986 (1103)
Q Consensus       919 ~~-~~~~~~~~~~~~~~~-~~~v~~l~fs~dg~~l~~~~d~-~v~iwd~~~~~-~~~-~~~~~h-------~~~v~~l~f  986 (1103)
                      .. ......+..-+.... ......++|+|.+..|.++.+. -+.||.++.+. .+. .....+       -..|+++.|
T Consensus       161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~  240 (316)
T COG3204         161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF  240 (316)
T ss_pred             ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence            32 111111111111111 2357889999999998887543 35555554322 111 001111       235677778


Q ss_pred             ccC-CCEEEEEecCCcEEEEeCCCce
Q 001310          987 SCD-CRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       987 s~d-g~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      .+. +..|+-+.+++.+.-.|....-
T Consensus       241 ~~~~~~LLVLS~ESr~l~Evd~~G~~  266 (316)
T COG3204         241 NAITNSLLVLSDESRRLLEVDLSGEV  266 (316)
T ss_pred             cCCCCcEEEEecCCceEEEEecCCCe
Confidence            764 4556666677777777776553

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=95.01  E-value=8.1  Score=43.69  Aligned_cols=58  Identities=12%  Similarity=0.075  Sum_probs=40.9

Q ss_pred             eEEEEcCCCCEEEEEeC--CeEEEEECCCce--EEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310          940 THIQFHKDQTRFLLVHE--THLAIYEAEELT--CLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       940 ~~l~fs~dg~~l~~~~d--~~v~iwd~~~~~--~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      --++|.|....+|++++  +.|.||.+....  .+.++.-..+.+-.+++|-.|...|+..|
T Consensus       342 DliAfn~kaq~VAVASNTcn~ilVYSv~~s~mPniQqIqLe~~ERPKGiCFltdklLLilVG  403 (671)
T PF15390_consen  342 DLIAFNPKAQVVAVASNTCNIILVYSVTPSSMPNIQQIQLESNERPKGICFLTDKLLLILVG  403 (671)
T ss_pred             ceeeeCCcCCEEEEEecCCcEEEEEEeccccCCCeeEEEcccCCCCceeeEccCCeEEEEec
Confidence            45899999999999755  579999886422  12222223467778899988887766554

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=95.00  E-value=0.07  Score=51.88  Aligned_cols=103  Identities=17%  Similarity=0.201  Sum_probs=65.8

Q ss_pred             CEEEEE-cCCeEEEEEcCCceeeE-EecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCC-CCEEE
Q 001310          815 AYLFSA-SGGVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTG  891 (1103)
Q Consensus       815 ~~l~~~-~dg~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~  891 (1103)
                      .-+++| ++|.|.+|...-..... ....-...|-++.-.-+++.+..++..||.|+.|++.-++.+.....|. .++..
T Consensus        71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~  150 (238)
T KOG2444|consen   71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE  150 (238)
T ss_pred             ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence            334444 58999999886222211 1111222333332222255699999999999999999988888877787 55555


Q ss_pred             EEEccCCCEEEEE--eCCCeEEEEEcCC
Q 001310          892 LVFSDALNILVSS--GGDAQIFVWDVDG  917 (1103)
Q Consensus       892 l~~s~dg~~l~s~--s~dg~I~iwd~~~  917 (1103)
                      +..+..++.++++  |.|..++.|++..
T Consensus       151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  151 LIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             eEEecCCceEEeeccccchhhhhcchhh
Confidence            5555556666666  6677777777664

>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.91  E-value=0.085  Score=62.46  Aligned_cols=102  Identities=12%  Similarity=0.124  Sum_probs=74.6

Q ss_pred             cEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccC
Q 001310          500 HFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH  578 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~  578 (1103)
                      ..++.|+..|.+-..|+...-. ...-....++|++++|+.+|+.++.|-.    +|.|.+||+..++.++.+..+....
T Consensus       100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~----~G~V~v~D~~~~k~l~~i~e~~ap~  175 (1206)
T KOG2079|consen  100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLG----DGHVTVWDMHRAKILKVITEHGAPV  175 (1206)
T ss_pred             eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccC----CCcEEEEEccCCcceeeeeecCCcc
Confidence            4688888888888877765322 1222334568999999999999998865    6779999999999999888776444


Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  607 (1103)
                      ..+..+.+..++..++++...|.  +|.+
T Consensus       176 t~vi~v~~t~~nS~llt~D~~Gs--f~~l  202 (1206)
T KOG2079|consen  176 TGVIFVGRTSQNSKLLTSDTGGS--FWKL  202 (1206)
T ss_pred             ceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence            55555566666667788777776  5554

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=94.76  E-value=1.5  Score=42.91  Aligned_cols=159  Identities=11%  Similarity=0.099  Sum_probs=89.9

Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE----eCC---eEEEE
Q 001310          890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HET---HLAIY  962 (1103)
Q Consensus       890 ~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~----~d~---~v~iw  962 (1103)
                      ..+.-+.. ..|..+.....|.+|++...+......+.+..       .|..+.++..|++|++-    ...   .+++|
T Consensus        21 ~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~-------~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y   92 (215)
T PF14761_consen   21 TAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFSTVG-------RVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAY   92 (215)
T ss_pred             ceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcchh-------heeEEEeccccceEEEEEeecCCccceEEEEE
Confidence            33444442 34434456677999999965544444455442       68899999999999993    222   45554


Q ss_pred             ---ECC--CceEEEEeeCCC---------------------CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCcee-EEe
Q 001310          963 ---EAE--ELTCLKQWFPIS---------------------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV-QCR 1015 (1103)
Q Consensus       963 ---d~~--~~~~~~~~~~~h---------------------~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~-~~~ 1015 (1103)
                         +..  ..+.+.....||                     +.++.+++..|-..-|++|+ ++.+.+|.+..... ...
T Consensus        93 ~NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~  171 (215)
T PF14761_consen   93 FNWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEK  171 (215)
T ss_pred             EEhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEeccc
Confidence               332  222332222232                     34556677767544556565 56899999876654 333


Q ss_pred             eccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      +...+|.....          .|-..+.+..+++-   ++++|..+ +-.+++.++
T Consensus       172 ~~~lDFe~~l~----------~~~~~~~p~~v~ic---~~yiA~~s-~~ev~Vlkl  213 (215)
T PF14761_consen  172 FSFLDFERSLI----------DHIDNFKPTQVAIC---EGYIAVMS-DLEVLVLKL  213 (215)
T ss_pred             ccEEechhhhh----------heecCceEEEEEEE---eeEEEEec-CCEEEEEEE
Confidence            33333332221          22333445555555   56777665 556787765

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.32  E-value=1.1  Score=52.14  Aligned_cols=113  Identities=13%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEc-----
Q 001310          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLY-----  516 (1103)
Q Consensus       443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~-----  516 (1103)
                      ...-+.-|.-++  ..+.-+...++.|||...+...+.-. ...+.|.++.|...++++.+++.+..+.|.++.-     
T Consensus        31 ~~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy  108 (631)
T PF12234_consen   31 NPSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDY  108 (631)
T ss_pred             CcceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhh
Confidence            344444455555  34444445579999998888654433 4578899999999999999999999999998843     


Q ss_pred             CCCCe----e--EEecC-CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          517 DSLGA----R--VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       517 ~~~~~----~--~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      .+...    .  ..+.. ..++|...+|.++|..++.++.      .+.++|-.
T Consensus       109 ~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sGN------qlfv~dk~  156 (631)
T PF12234_consen  109 TNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSGN------QLFVFDKW  156 (631)
T ss_pred             hcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeCC------EEEEECCC
Confidence            11111    1  12222 3368899999999988877642      48887743

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PHA03098 kelch-like protein; Provisional

Probab=94.17  E-value=2.2  Score=50.69  Aligned_cols=188  Identities=10%  Similarity=-0.010  Sum_probs=95.9

Q ss_pred             cCCCEEEEEc-C------CeEEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCce
Q 001310          812 KNDAYLFSAS-G------GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE  877 (1103)
Q Consensus       812 ~d~~~l~~~~-d------g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~  877 (1103)
                      .++..++.|+ +      ..+..||..+.+-...  +.........+++   ++++.+.|+.+     ..+..||..+.+
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~v~~yd~~~~~  369 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVF---NNRIYVIGGIYNSISLNTVESWKPGESK  369 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEEE---CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence            4556666654 2      2477888776554221  1111122222222   67788888865     357788887654


Q ss_pred             eE--EEeccCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310          878 VI--SKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1103)
Q Consensus       878 ~~--~~l~~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  949 (1103)
                      -.  ..+....... ++ ..-++++.+.||.+      ..+..||..+++......+.  ....      ...+...+++
T Consensus       370 W~~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~r~------~~~~~~~~~~  439 (534)
T PHA03098        370 WREEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--ISHY------GGCAIYHDGK  439 (534)
T ss_pred             eeeCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cccc------CceEEEECCE
Confidence            22  1121111111 12 22367788887742      35888998876543322211  1111      1122334566


Q ss_pred             EEEEE-eC--------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeE
Q 001310          950 RFLLV-HE--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1013 (1103)
Q Consensus       950 ~l~~~-~d--------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~ 1013 (1103)
                      ..+.| .+        ..+.+||..+++....-.......-.++ ...+++.++.||.+     ..|.+||..+.+..
T Consensus       440 iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~  516 (534)
T PHA03098        440 IYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWT  516 (534)
T ss_pred             EEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEEE
Confidence            66664 21        2388999887764432111111111112 22377777777754     46888998887654

>PHA03098 kelch-like protein; Provisional

Probab=94.10  E-value=2.3  Score=50.59  Aligned_cols=153  Identities=8%  Similarity=-0.018  Sum_probs=73.1

Q ss_pred             CccEEEEEECC-----CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC--ceeEEEEeCCCCeeEEE
Q 001310          498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG--ESFLVEWNESEGAIKRT  570 (1103)
Q Consensus       498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~  570 (1103)
                      ++.+.+.|+.+     ..+..||..+.+-..............+..-+++..+.|+....+  -..+..||+.+++....
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~  421 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG  421 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence            45667777765     246667766544322111111111111223456666666532221  24588999887654332


Q ss_pred             EecccccCCceEEEEEcCCCCEEEEEeCC--------CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDD--------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      -.... ..... +++ ..++..++.||.+        ..+.+||..+++....-...........+  .-+++.++.|+.
T Consensus       422 ~~~p~-~r~~~-~~~-~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~--~~~~~iyv~GG~  496 (534)
T PHA03098        422 SPLPI-SHYGG-CAI-YHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC--IFNNKIYVVGGD  496 (534)
T ss_pred             CCCCc-cccCc-eEE-EECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE--EECCEEEEEcCC
Confidence            21111 01111 222 2245555566532        23888998877654332211111111122  236777777765


Q ss_pred             C-----CeEEEEEcCCCC
Q 001310          643 E-----NRIKILETPESN  655 (1103)
Q Consensus       643 d-----g~i~iw~~~~~~  655 (1103)
                      +     +.+.+||..+.+
T Consensus       497 ~~~~~~~~v~~yd~~~~~  514 (534)
T PHA03098        497 KYEYYINEIEVYDDKTNT  514 (534)
T ss_pred             cCCcccceeEEEeCCCCE
Confidence            4     467778777653

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=94.09  E-value=1.5  Score=51.16  Aligned_cols=122  Identities=8%  Similarity=0.089  Sum_probs=76.1

Q ss_pred             ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec-cCCCCEEEEEEc--cCCCEEEEEeCCCeEEEEEc
Q 001310          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-GHSKRVTGLVFS--DALNILVSSGGDAQIFVWDV  915 (1103)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-~h~~~V~~l~~s--~dg~~l~s~s~dg~I~iwd~  915 (1103)
                      +...-...+-+.-|. -++..++-+....+.|||...+.....-. ...+.|.++.|.  |||+.+++.|-...|.++.-
T Consensus        25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q  103 (631)
T PF12234_consen   25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ  103 (631)
T ss_pred             EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence            333334555555555 45555555555699999999886433222 356789999885  78999999999999999854


Q ss_pred             CC----CceeeeeeeecC--CCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001310          916 DG----WGIQTCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  964 (1103)
Q Consensus       916 ~~----~~~~~~~~~~~~--~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~  964 (1103)
                      ..    ........++..  ..+.+  .+|.+..|-++|.+++ |.++++.|+|-
T Consensus       104 ~R~dy~~~~p~w~~i~~i~i~~~T~--h~Igds~Wl~~G~LvV-~sGNqlfv~dk  155 (631)
T PF12234_consen  104 LRYDYTNKGPSWAPIRKIDISSHTP--HPIGDSIWLKDGTLVV-GSGNQLFVFDK  155 (631)
T ss_pred             cchhhhcCCcccceeEEEEeecCCC--CCccceeEecCCeEEE-EeCCEEEEECC
Confidence            21    111111111111  12222  2688999999998655 45667888764

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG2444 consensus WD40 repeat protein [General function prediction only]

Probab=94.03  E-value=0.18  Score=49.14  Aligned_cols=106  Identities=12%  Similarity=0.057  Sum_probs=65.2

Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEE-EEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL-AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~-~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  485 (1103)
                      -++.|++|+.+|.|.+|++..-......  ...-...|.++ .-..++.  +..+++.|+.|+.|++.-++.+.....|.
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~--~~s~~e~i~~~Ip~~~~~~--~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDR--VCSGEESIDLGIPNGRDSS--LGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHh--hhcccccceeccccccccc--eeEEeccCCceeeeccccCceeeeecccc
Confidence            3578999999999999998732111110  11112223222 2233344  68889999999999999998887777776


Q ss_pred             -CceEEEEeeecCCccEEEEE--ECCCeEEEEEcCC
Q 001310          486 -APVYSLCPHAKENIHFIFSI--SVDGKIKAWLYDS  518 (1103)
Q Consensus       486 -~~v~~~~~~~~~~~~~l~s~--~~dg~i~iwd~~~  518 (1103)
                       .++.......  .+..++.+  |.|..++.|++..
T Consensus       145 ~~~~e~~ivv~--sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  145 FESGEELIVVG--SDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             CCCcceeEEec--CCceEEeeccccchhhhhcchhh
Confidence             4444443322  33455555  6666677776653

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.70  E-value=4.9  Score=46.59  Aligned_cols=180  Identities=11%  Similarity=0.108  Sum_probs=98.4

Q ss_pred             eEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE--e--ccCCCCEEEEEEccCCC
Q 001310          824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK--L--EGHSKRVTGLVFSDALN  899 (1103)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~--l--~~h~~~V~~l~~s~dg~  899 (1103)
                      .|+||++. |..+.++.-..+.+..+.|+. + .-|++...+|++++|++.. +.+..  .  +.....|..+.|..+|-
T Consensus        65 ~I~If~~s-G~lL~~~~w~~~~lI~mgWs~-~-eeLI~v~k~g~v~Vy~~~g-e~ie~~svg~e~~~~~I~ec~~f~~GV  140 (829)
T KOG2280|consen   65 YIRIFNIS-GQLLGRILWKHGELIGMGWSD-D-EELICVQKDGTVHVYGLLG-EFIESNSVGFESQMSDIVECRFFHNGV  140 (829)
T ss_pred             eEEEEecc-ccchHHHHhcCCCeeeecccC-C-ceEEEEeccceEEEeecch-hhhcccccccccccCceeEEEEecCce
Confidence            47888874 666666554455889999996 4 4667788999999999873 32222  1  22233466666666664


Q ss_pred             EEEEEeCCCeEE-EEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE--EEEeC---C-eEEEEECCCceEEEE
Q 001310          900 ILVSSGGDAQIF-VWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF--LLVHE---T-HLAIYEAEELTCLKQ  972 (1103)
Q Consensus       900 ~l~s~s~dg~I~-iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l--~~~~d---~-~v~iwd~~~~~~~~~  972 (1103)
                      .+.+  .+|.+. +-+++.....   .++...+...   .-.+...-+++...  ...-+   + .+..-+..+.+... 
T Consensus       141 avlt--~~g~v~~i~~~~~~~~~---~~~diP~~~~---~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~-  211 (829)
T KOG2280|consen  141 AVLT--VSGQVILINGVEEPKLR---KMPDIPYNEL---PKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHA-  211 (829)
T ss_pred             EEEe--cCCcEEEEcCCCcchhh---hCCCCCCccC---CCcceeEecCCCcceeEEeechhhhhcccceecccccccc-
Confidence            4443  344333 3333331111   1111111111   11233333332211  11111   1 11111111122211 


Q ss_pred             eeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          973 WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       973 ~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      +... ...+..+..||+.++|+--..+|.|.+-+++..+..|.+.
T Consensus       212 ~~~~-~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~  255 (829)
T KOG2280|consen  212 LSWP-NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN  255 (829)
T ss_pred             cCCC-CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence            1111 3567889999999999999999999999999888888777

>PHA02790 Kelch-like protein; Provisional

Probab=93.60  E-value=3.3  Score=48.07  Aligned_cols=185  Identities=12%  Similarity=-0.008  Sum_probs=95.9

Q ss_pred             cCCCEEEEEc-C-----CeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC--CeEEEEEcCCcee--E
Q 001310          812 KNDAYLFSAS-G-----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD--STILIYNARSSEV--I  879 (1103)
Q Consensus       812 ~d~~~l~~~~-d-----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d--g~v~iwd~~~~~~--~  879 (1103)
                      .++..+++|+ +     ..+..||..+++-..  .+.........++  - ++++.++|+.+  ..+..||..+++-  +
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~--~-~~~iYviGG~~~~~sve~ydp~~n~W~~~  346 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVP--A-NNKLYVVGGLPNPTSVERWFHGDAAWVNM  346 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEE--E-CCEEEEECCcCCCCceEEEECCCCeEEEC
Confidence            3455556665 2     246778877654322  2221222222222  3 67788888864  3678888765432  2


Q ss_pred             EEeccCCCCEEEEEEccCCCEEEEEeCCC---eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeC
Q 001310          880 SKLEGHSKRVTGLVFSDALNILVSSGGDA---QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE  956 (1103)
Q Consensus       880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg---~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d  956 (1103)
                      ..+.......  .+..-+|+..+.||.++   .+..||..+++-.....+..+..        ...+..-+|++.++|  
T Consensus       347 ~~l~~~r~~~--~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~--------~~~~~~~~~~IYv~G--  414 (480)
T PHA02790        347 PSLLKPRCNP--AVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHY--------KSCALVFGRRLFLVG--  414 (480)
T ss_pred             CCCCCCCccc--EEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccc--------cceEEEECCEEEEEC--
Confidence            2222111111  12233688888888654   46788887765433222222211        112223456666665  


Q ss_pred             CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCcee
Q 001310          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEV 1012 (1103)
Q Consensus       957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~ 1012 (1103)
                      |.+.+||..+++-...-...+...-.+++ .-+|+..++||.+     .+|..||..+++.
T Consensus       415 G~~e~ydp~~~~W~~~~~m~~~r~~~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd~~~~~W  474 (480)
T PHA02790        415 RNAEFYCESSNTWTLIDDPIYPRDNPELI-IVDNKLLLIGGFYRGSYIDTIEVYNNRTYSW  474 (480)
T ss_pred             CceEEecCCCCcEeEcCCCCCCccccEEE-EECCEEEEECCcCCCcccceEEEEECCCCeE
Confidence            35778888776554321111111111222 3477888888754     3577888777664

>cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID)

Probab=93.56  E-value=0.081  Score=48.59  Aligned_cols=79  Identities=15%  Similarity=0.306  Sum_probs=58.5

Q ss_pred             hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHHHHHHH
Q 001310           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSARKNMM  145 (1103)
Q Consensus        72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~r~~l~  145 (1103)
                      ++|+++-+.||||+.+|..++|..++++.-..+.....+..+.|+.+.+..++.+++....+...      .+.+-..|+
T Consensus        29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~  108 (133)
T cd08044          29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL  108 (133)
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence            99999999999999999999999999997766665567778888888887777665543332221      144455555


Q ss_pred             HHHHH
Q 001310          146 LELKQ  150 (1103)
Q Consensus       146 ~~l~~  150 (1103)
                      ..|++
T Consensus       109 ~~L~~  113 (133)
T cd08044         109 RFLES  113 (133)
T ss_pred             HHHHH
Confidence            55554

The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various

>PRK13684 Ycf48-like protein; Provisional

Probab=93.46  E-value=14  Score=40.45  Aligned_cols=152  Identities=18%  Similarity=0.157  Sum_probs=92.4

Q ss_pred             CCCeeEEEEecCCCEEEEEcCCeEEEE-EcCCceeeEEe-cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001310          802 QEAVPCFALSKNDAYLFSASGGVISLY-IVMTFKTILTI-MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~dg~i~iw-d~~~~~~~~~~-~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1103)
                      ...+.++.+.+++.+++++..|.+..- |- .++.-... ......++++++.+ +++.+++| ..|.+++=..+.|..-
T Consensus       172 ~g~~~~i~~~~~g~~v~~g~~G~i~~s~~~-gg~tW~~~~~~~~~~l~~i~~~~-~g~~~~vg-~~G~~~~~s~d~G~sW  248 (334)
T PRK13684        172 AGVVRNLRRSPDGKYVAVSSRGNFYSTWEP-GQTAWTPHQRNSSRRLQSMGFQP-DGNLWMLA-RGGQIRFNDPDDLESW  248 (334)
T ss_pred             cceEEEEEECCCCeEEEEeCCceEEEEcCC-CCCeEEEeeCCCcccceeeeEcC-CCCEEEEe-cCCEEEEccCCCCCcc
Confidence            456788999999999988888865432 21 12212222 23446889999999 77776665 4676653234444322


Q ss_pred             EEecc----CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe
Q 001310          880 SKLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH  955 (1103)
Q Consensus       880 ~~l~~----h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~  955 (1103)
                      .....    -...+.++++.+++..++ ++.+|.|. ...+.|+.-.  .+....+.   ......+.|..+++.+++|.
T Consensus       249 ~~~~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~-~S~d~G~tW~--~~~~~~~~---~~~~~~~~~~~~~~~~~~G~  321 (334)
T PRK13684        249 SKPIIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL-VSKDGGKTWE--KDPVGEEV---PSNFYKIVFLDPEKGFVLGQ  321 (334)
T ss_pred             ccccCCccccccceeeEEEcCCCCEEE-EcCCCeEE-EeCCCCCCCe--ECCcCCCC---CcceEEEEEeCCCceEEECC
Confidence            22111    123578899999877655 55677554 4555544211  11111111   12577888988999999999


Q ss_pred             CCeEEEEE
Q 001310          956 ETHLAIYE  963 (1103)
Q Consensus       956 d~~v~iwd  963 (1103)
                      .|.|.-|+
T Consensus       322 ~G~il~~~  329 (334)
T PRK13684        322 RGVLLRYV  329 (334)
T ss_pred             CceEEEec
Confidence            99888776

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.39  E-value=11  Score=39.07  Aligned_cols=214  Identities=12%  Similarity=0.128  Sum_probs=123.7

Q ss_pred             cEEEEEEecCCCceEEEEEcCCCceEEEeCC------CCc-eeEEeec-----CCCceEEEEeeecC------Cc----c
Q 001310          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAV------TGS-RTYSFEG-----HGAPVYSLCPHAKE------NI----H  500 (1103)
Q Consensus       443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~------~~~-~~~~~~~-----~~~~v~~~~~~~~~------~~----~  500 (1103)
                      .-+.|+|+|.+.  +-++....+...+||..      ..+ .+-++..     .....+.+.|+...      ++    .
T Consensus        24 N~WGia~~p~~~--~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a  101 (336)
T TIGR03118        24 NAWGLSYRPGGP--FWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS  101 (336)
T ss_pred             ccceeEecCCCC--EEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence            467899999887  67777778899999986      122 2233332     12345666654321      11    2


Q ss_pred             EEEEEECCCeEEEEEcCCCCe-----eEEecC--CCccEEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeE--E
Q 001310          501 FIFSISVDGKIKAWLYDSLGA-----RVDYDA--PGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIK--R  569 (1103)
Q Consensus       501 ~l~s~~~dg~i~iwd~~~~~~-----~~~~~~--~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~--~  569 (1103)
                      .++.+++||+|.-|...-...     ...+..  ...-...+++..  .+.+|+.+-.   ..++|.++|-.=....  .
T Consensus       102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF---~~g~IDVFd~~f~~~~~~g  178 (336)
T TIGR03118       102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF---RQGRIDVFKGSFRPPPLPG  178 (336)
T ss_pred             eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc---CCCceEEecCccccccCCC
Confidence            468889999999997533222     122221  122334555553  3667766543   2566888875422211  0


Q ss_pred             EEeccccc--CCc-----------eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec----
Q 001310          570 TYQGLQLQ--HNS-----------VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK----  632 (1103)
Q Consensus       570 ~~~~~~~~--~~~-----------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~----  632 (1103)
                      .+......  -.+           |+...-.++...=+.|..-|.|-+||. .|+.++++...+....-+.|+..|    
T Consensus       179 ~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG  257 (336)
T TIGR03118       179 SFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFG  257 (336)
T ss_pred             CccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhC
Confidence            01111000  000           111111222222233344578999997 578888887666666667888765    


Q ss_pred             --CCCEEEEEECCCeEEEEEcCCCCeeEeccc
Q 001310          633 --NGTLLAVIANENRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       633 --~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1103)
                        .|.+|+---.||+|..+|..+++.+..+..
T Consensus       258 ~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~  289 (336)
T TIGR03118       258 SLSGALLVGNFGDGTINAYDPQSGAQLGQLLD  289 (336)
T ss_pred             CCCCCeEEeecCCceeEEecCCCCceeeeecC
Confidence              466777777799999999998887776654

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=93.36  E-value=11  Score=40.00  Aligned_cols=188  Identities=10%  Similarity=0.035  Sum_probs=102.5

Q ss_pred             eeEEEEecCCCEEEEEc-------------CCeEEEEEcCCceeeEEecCC------CCCeeEEEEcCCCC----CEEEE
Q 001310          805 VPCFALSKNDAYLFSAS-------------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDN----NVIAI  861 (1103)
Q Consensus       805 v~~l~~s~d~~~l~~~~-------------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~----~~las  861 (1103)
                      |..+...+++++-+.=.             .-++.+||+.+++.++++.-+      ......+++...++    .++..
T Consensus         3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI   82 (287)
T PF03022_consen    3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI   82 (287)
T ss_dssp             EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred             ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence            44556666666555421             126889999999988876532      34667787766222    24444


Q ss_pred             Ee-CCCeEEEEEcCCceeEEEeccC-------------------CCCEEEEEEcc---CCCEEEEEeCCCeEEEEEcCCC
Q 001310          862 GM-DDSTILIYNARSSEVISKLEGH-------------------SKRVTGLVFSD---ALNILVSSGGDAQIFVWDVDGW  918 (1103)
Q Consensus       862 g~-~dg~v~iwd~~~~~~~~~l~~h-------------------~~~V~~l~~s~---dg~~l~s~s~dg~I~iwd~~~~  918 (1103)
                      .. ..+.|.|+|+.+++..+.+..+                   .+.+..++.+|   ||++|....-.+ -++|.+.+.
T Consensus        83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~  161 (287)
T PF03022_consen   83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS  161 (287)
T ss_dssp             EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred             eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence            43 3458999999998765554432                   12366666655   666666555443 234444331


Q ss_pred             ceeee-----e----eeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCc----eEEEEeeCCC-CcCeEE
Q 001310          919 GIQTC-----R----SLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEEL----TCLKQWFPIS-SVPISQ  983 (1103)
Q Consensus       919 ~~~~~-----~----~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~----~~~~~~~~~h-~~~v~~  983 (1103)
                      -+...     .    .++.. |...  .....++++++|.+..+- ..+.|..|+..+.    .......... -..+.+
T Consensus       162 ~L~~~~~~~~~~~~~~v~~l-G~k~--~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~  238 (287)
T PF03022_consen  162 VLRDPSLSDAQALASQVQDL-GDKG--SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDG  238 (287)
T ss_dssp             HHCSTT--HHH-HHHT-EEE-EE-----SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEE
T ss_pred             HhhCccccccccccccceec-cccC--CCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccce
Confidence            11110     0    01110 0000  135678999999988884 8889999999861    1111112222 356788


Q ss_pred             EEEcc--CCCEEEEE
Q 001310          984 ATFSC--DCRMVFTS  996 (1103)
Q Consensus       984 l~fs~--dg~~l~t~  996 (1103)
                      +.+.+  +|.+.+.+
T Consensus       239 ~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  239 LKIDPEGDGYLWVLS  253 (287)
T ss_dssp             EEE-T--TS-EEEEE
T ss_pred             eeeccccCceEEEEE
Confidence            88888  77766655

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=93.35  E-value=11  Score=39.03  Aligned_cols=243  Identities=11%  Similarity=0.086  Sum_probs=121.7

Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCC-------CeeEeccc-----cccceeeeEEecCCceeeeeccCCceEec
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPES-------NSVDAAGV-----LSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~-------~~~~~~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  691 (1103)
                      .-+.++++|.+.+.++....+...+||....       ..+..+..     .....+.+.|+....          ..+.
T Consensus        24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~----------F~vt   93 (336)
T TIGR03118        24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDT----------FVVS   93 (336)
T ss_pred             ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCc----------eEEc
Confidence            3578999999988888888899999998621       11222221     112333444442211          1111


Q ss_pred             CCCCCCCccceeeccccccccccccccCCcccee-eeccCccccccEEEEEEe--cCCcEEEEeec-CceEEEeecCCCc
Q 001310          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQS-LLLPSKVKANKISRLTYN--NGGQAIFALAS-NGVHLMWRWPRND  767 (1103)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~-~~~~~~~~~~~i~~~~~s--~~g~~l~~~~~-dg~i~vw~~~~~~  767 (1103)
                      .........++.+++||+|.-|............ +.........--..+++.  ..+.+|.++.- +++|.++|-.-..
T Consensus        94 ~~g~~~~a~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~  173 (336)
T TIGR03118        94 GEGITGPSRFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRP  173 (336)
T ss_pred             CCCcccceeEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcccc
Confidence            1111122346788999999999965433311111 111111112222344444  33566655543 5888888754433


Q ss_pred             cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE-cCCeEEEEEcCCceeeEEecC--CCC
Q 001310          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMP--PSP  844 (1103)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~dg~i~iwd~~~~~~~~~~~~--~~~  844 (1103)
                      ....+......-      ..+.  ..+.+.-.+..--|+-..-.++++.=+.+ +-|.|-+||.. |..++++..  .-.
T Consensus       174 ~~~~g~F~DP~i------Pagy--APFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LN  244 (336)
T TIGR03118       174 PPLPGSFIDPAL------PAGY--APFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLN  244 (336)
T ss_pred             ccCCCCccCCCC------CCCC--CCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCccc
Confidence            221111111000      0000  00000000000001111111222111112 23679999985 777777742  223


Q ss_pred             CeeEEEEcC-----CCCCEEEEEeCCCeEEEEEcCCceeEEEeccC
Q 001310          845 TATSLAFNP-----HDNNVIAIGMDDSTILIYNARSSEVISKLEGH  885 (1103)
Q Consensus       845 ~i~~l~~s~-----~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  885 (1103)
                      .-+.|+..|     -.+.+|+---.||+|-.+|..+|+.+..+...
T Consensus       245 aPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~  290 (336)
T TIGR03118       245 APWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDP  290 (336)
T ss_pred             CCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCC
Confidence            456666644     25778887788999999999999988877753

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.32  E-value=12  Score=45.23  Aligned_cols=136  Identities=14%  Similarity=0.185  Sum_probs=66.8

Q ss_pred             CCcEEEEECCCCCeeeeeeeeEeecc---ccccceeeeec-cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc
Q 001310          356 VGDTGLWDVNSGQKLFIRNFKVWDIG---ACSMLFKTALV-RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA  431 (1103)
Q Consensus       356 d~~v~iwd~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~-~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~  431 (1103)
                      |+.+.+||-..... .+.+++--+..   .+...++.... ..-.-.|..+.+||+|++||..|..| |.|-.+-..  .
T Consensus        41 d~~L~vWd~~e~~l-~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~  116 (717)
T PF10168_consen   41 DGDLFVWDSSECCL-LTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--W  116 (717)
T ss_pred             CCEEEEEECCCCEE-EEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--c
Confidence            47788888554332 22222221111   11123333222 22346899999999999999998877 444444210  0


Q ss_pred             ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecC-CccEEEEEECCCe
Q 001310          432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE-NIHFIFSISVDGK  510 (1103)
Q Consensus       432 ~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~l~s~~~dg~  510 (1103)
                      .....+.+-...|.|=.+.=+..   +..                     ..+...|..+.|||.. ++..|+.-..|++
T Consensus       117 g~~~~~~~g~~~i~Crt~~v~~~---~~~---------------------~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~  172 (717)
T PF10168_consen  117 GKNGEFEDGKKEINCRTVPVDER---FFT---------------------SNSSLEIKQVRWHPWSESDSHLVVLTSDNT  172 (717)
T ss_pred             CccccccCCCcceeEEEEEechh---hcc---------------------CCCCceEEEEEEcCCCCCCCeEEEEecCCE
Confidence            00001222222233322221111   111                     1123345556666653 3566777777888


Q ss_pred             EEEEEcCCC
Q 001310          511 IKAWLYDSL  519 (1103)
Q Consensus       511 i~iwd~~~~  519 (1103)
                      +|+||+...
T Consensus       173 lR~y~~~~~  181 (717)
T PF10168_consen  173 LRLYDISDP  181 (717)
T ss_pred             EEEEecCCC
Confidence            888877543

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.27  E-value=6.7  Score=45.59  Aligned_cols=207  Identities=13%  Similarity=0.149  Sum_probs=99.3

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      +++-+|..+|....=+.  +.--.|+|++.. |..+.+.                  +-.|. .+..+.||.+..+|+ .
T Consensus        44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~~~------------------~w~~~-~lI~mgWs~~eeLI~-v  100 (829)
T KOG2280|consen   44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLGRI------------------LWKHG-ELIGMGWSDDEELIC-V  100 (829)
T ss_pred             CCceEEEeccccccccc--ccceeEEEEecc-ccchHHH------------------HhcCC-CeeeecccCCceEEE-E
Confidence            35556666663321111  233568888864 5544331                  11243 888999997776655 4


Q ss_pred             eCCCeEEEEEecCCCccccc-eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec-CCCceEEEE
Q 001310          415 YSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLC  492 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~  492 (1103)
                      ..+|+++||++.... +... .........|..+.|..+|-  .+.+  .+|.+.+-+-.....++++.. ........|
T Consensus       101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV--avlt--~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~  175 (829)
T KOG2280|consen  101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV--AVLT--VSGQVILINGVEEPKLRKMPDIPYNELPKSC  175 (829)
T ss_pred             eccceEEEeecchhh-hcccccccccccCceeEEEEecCce--EEEe--cCCcEEEEcCCCcchhhhCCCCCCccCCCcc
Confidence            699999999997532 2211 01122334566667766663  3333  344444433122212233221 111111112


Q ss_pred             eeecCC---ccEEEEEECCCeEEEEEcCCCC-eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          493 PHAKEN---IHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       493 ~~~~~~---~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      |....+   ...++-....-...++..+... ....+......+..+.+||+.++|+.-..    .|.|.+-+....+..
T Consensus       176 Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~l  251 (829)
T KOG2280|consen  176 WTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQIL  251 (829)
T ss_pred             eeEecCCCcceeEEeechhhhhcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhhh
Confidence            211111   1111111100001111111111 11122223457788999999999998765    455877777766666


Q ss_pred             EEEec
Q 001310          569 RTYQG  573 (1103)
Q Consensus       569 ~~~~~  573 (1103)
                      ..+..
T Consensus       252 ce~~~  256 (829)
T KOG2280|consen  252 CEFNC  256 (829)
T ss_pred             hccCC
Confidence            66553

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.20  E-value=11  Score=38.32  Aligned_cols=148  Identities=12%  Similarity=0.061  Sum_probs=102.3

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeee
Q 001310          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  924 (1103)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~  924 (1103)
                      .-..++-+| ||..-+++...|.|--.|-.+|+....--+....-..+..-|||...++-+.. .|.-.|-++.+...  
T Consensus        63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~--  138 (353)
T COG4257          63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTR--  138 (353)
T ss_pred             CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEE--
Confidence            345677788 88888888888888888888888766555555556778888999877764443 46666666655433  


Q ss_pred             eeecCCCcccCCCCceEEEEcCCCCEEEEEeCC----------eEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEE
Q 001310          925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET----------HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1103)
Q Consensus       925 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~----------~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1103)
                       +..+..+..  .......|.++|++-.++..|          .|.+|+..           ....-..|+..|||..-+
T Consensus       139 -f~lp~~~a~--~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP-----------qG~gpyGi~atpdGsvwy  204 (353)
T COG4257         139 -FPLPLEHAD--ANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAP-----------QGGGPYGICATPDGSVWY  204 (353)
T ss_pred             -eecccccCC--CcccceeeCCCccEEEeeccccceecCcccCceeeeccC-----------CCCCCcceEECCCCcEEE
Confidence             222222222  357789999999999886433          24444433           345567789999999888


Q ss_pred             EEecCCcEEEEeCCCc
Q 001310          995 TSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       995 t~~~dg~v~vWd~~~~ 1010 (1103)
                      +.-.+..|..-|..++
T Consensus       205 aslagnaiaridp~~~  220 (353)
T COG4257         205 ASLAGNAIARIDPFAG  220 (353)
T ss_pred             EeccccceEEcccccC
Confidence            7777777877777766

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=93.20  E-value=2  Score=51.58  Aligned_cols=94  Identities=15%  Similarity=0.211  Sum_probs=59.4

Q ss_pred             CcCeEEEEEccCCCEEEEEecCCcEEEEeCCC----------c--eeEEeeccccccCCCCCCCceeeEeeccCCceeeE
Q 001310          978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASN----------L--EVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPH 1045 (1103)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~----------~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 1045 (1103)
                      ...|..+.++++|++|+..|..| |.|-.+..          |  +..|+..+.+-.-+          ...++  +.-.
T Consensus        84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~----------~~~~~--~~i~  150 (717)
T PF10168_consen   84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFF----------TSNSS--LEIK  150 (717)
T ss_pred             ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhc----------cCCCC--ceEE
Confidence            45788899999999999988765 55545431          1  12333332211000          01122  3335


Q ss_pred             EEEECCCC--CcEEEEEecCCcEEEEccCCCCCCCccCCcc
Q 001310         1046 AIAAHPLK--PTQFAVGLTNGEVYVIEPNEPGDTWAVLPPD 1084 (1103)
Q Consensus      1046 ~~~~~p~~--~~~l~~~~~dg~v~vw~~~~~~~~w~~~~~~ 1084 (1103)
                      -+.|||..  +..|++=..|+++++||+.....-|.+.+..
T Consensus       151 qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~~p~~v~~~~  191 (717)
T PF10168_consen  151 QVRWHPWSESDSHLVVLTSDNTLRLYDISDPQHPWQVLSLS  191 (717)
T ss_pred             EEEEcCCCCCCCeEEEEecCCEEEEEecCCCCCCeEEEEcc
Confidence            67888862  4677788899999999998777777776644

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID

Probab=93.17  E-value=0.1  Score=48.61  Aligned_cols=57  Identities=14%  Similarity=0.327  Sum_probs=44.2

Q ss_pred             hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchh
Q 001310           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHE  128 (1103)
Q Consensus        72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~  128 (1103)
                      ++|+|+-+.|++|+..|..++|..++.+.-..+.....+.+++|..+....++.+.+
T Consensus        40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~   96 (142)
T PF04494_consen   40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENE   96 (142)
T ss_dssp             GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSH
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccH
Confidence            899999999999999999999999999977766655666778887766666555443

The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=92.94  E-value=5.4  Score=38.58  Aligned_cols=177  Identities=14%  Similarity=0.111  Sum_probs=93.8

Q ss_pred             CCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCE
Q 001310          813 NDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV  889 (1103)
Q Consensus       813 d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V  889 (1103)
                      +|.++.+.+   ...|++||+.+++.+..-.-....+..=-...-+..+.+-...+|.-..+|.++.+++..+. -.+.=
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG  133 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG  133 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence            556666665   35699999999988776543322221111111033455556778999999999988777665 22333


Q ss_pred             EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCce
Q 001310          890 TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELT  968 (1103)
Q Consensus       890 ~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~  968 (1103)
                      ..++  .|++-|..++...+++.-|.++-.......+ +..|...  ..+..+.|- ||...|- -....|...|.++|+
T Consensus       134 WgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~V-T~~g~pv--~~LNELE~V-dG~lyANVw~t~~I~rI~p~sGr  207 (262)
T COG3823         134 WGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQV-TDDGVPV--SKLNELEWV-DGELYANVWQTTRIARIDPDSGR  207 (262)
T ss_pred             eeee--cCCcceEeeCCceEEEecCHHHhhhcceEEE-EECCeec--ccccceeee-ccEEEEeeeeecceEEEcCCCCc
Confidence            4443  4666677766666777777665332221111 1111110  011122221 3333332 233444444555555


Q ss_pred             EEEEe-----------eCCCCcCeEEEEEccCC-CEEEEE
Q 001310          969 CLKQW-----------FPISSVPISQATFSCDC-RMVFTS  996 (1103)
Q Consensus       969 ~~~~~-----------~~~h~~~v~~l~fs~dg-~~l~t~  996 (1103)
                      .+.-.           ...|..-...+++.|++ ++++||
T Consensus       208 V~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         208 VVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             EEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            44321           22234456788999887 666665

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=92.87  E-value=1  Score=54.16  Aligned_cols=146  Identities=8%  Similarity=0.049  Sum_probs=95.2

Q ss_pred             CCCeeEEEEecCCCEEEEEc--C-CeEEEEEcCCceeeE-----EecC------CCCCeeEEEEcCCCCCEEEEEeCCCe
Q 001310          802 QEAVPCFALSKNDAYLFSAS--G-GVISLYIVMTFKTIL-----TIMP------PSPTATSLAFNPHDNNVIAIGMDDST  867 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~--d-g~i~iwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~  867 (1103)
                      .-++..++..+|+...++..  + -.|..||+.+...-+     .+..      ...-..++.|.|.=-...|+...|+.
T Consensus       100 ~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls  179 (1405)
T KOG3630|consen  100 EIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS  179 (1405)
T ss_pred             cccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccc
Confidence            45667778888887776654  3 358899987543222     1211      12344667788743345666778898


Q ss_pred             EEEEEcCCce-eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC
Q 001310          868 ILIYNARSSE-VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK  946 (1103)
Q Consensus       868 v~iwd~~~~~-~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~  946 (1103)
                      |++..+.-.. .+..+. -...+++++|+|.|+.++.|-..|++.-|...-....   .+..+....  ...|.+++|-.
T Consensus       180 l~V~~~~~~~~~v~s~p-~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e--~yrvl~v~Wl~  253 (1405)
T KOG3630|consen  180 LRVKSTKQLAQNVTSFP-VTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEE--NYRVLSVTWLS  253 (1405)
T ss_pred             hhhhhhhhhhhhhcccC-cccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCC--CcceeEEEEec
Confidence            9888765432 223333 4567899999999999999999999998876653211   122222111  24799999998


Q ss_pred             CCCEEEE
Q 001310          947 DQTRFLL  953 (1103)
Q Consensus       947 dg~~l~~  953 (1103)
                      .-.++++
T Consensus       254 t~eflvv  260 (1405)
T KOG3630|consen  254 TQEFLVV  260 (1405)
T ss_pred             ceeEEEE
Confidence            8888887

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=92.86  E-value=10  Score=42.51  Aligned_cols=201  Identities=12%  Similarity=0.022  Sum_probs=112.2

Q ss_pred             EecCCCEEEEEcCCeEEEEEcCCceeeEEecCCC--CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCC-
Q 001310          810 LSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS--PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-  886 (1103)
Q Consensus       810 ~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~--~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-  886 (1103)
                      ..-|++.++...+|.|.-.|..+++.+.......  ..+..-.+.. +|+ ++.++.+|.++.+|..+|+.+....... 
T Consensus        65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            4456777666667888888888887665443221  2333333333 564 7778899999999998999888877655 


Q ss_pred             CCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe--CCeEEEEEC
Q 001310          887 KRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ETHLAIYEA  964 (1103)
Q Consensus       887 ~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--d~~v~iwd~  964 (1103)
                      -.+..-..-.++..++ .+.++.+...|-.+|+..-..........     .+..-....++...+...  ++.+.-.|.
T Consensus       143 ~~~~~~~v~~~~~v~~-~s~~g~~~al~~~tG~~~W~~~~~~~~~~-----~~~~~~~~~~~~vy~~~~~~~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPVVGDGTVYV-GTDDGHLYALNADTGTLKWTYETPAPLSL-----SIYGSPAIASGTVYVGSDGYDGILYALNA  216 (370)
T ss_pred             eEEecCcEEcCcEEEE-ecCCCeEEEEEccCCcEEEEEecCCcccc-----ccccCceeecceEEEecCCCcceEEEEEc
Confidence            1222222333443333 33678788777777765332222110000     111111133444444433  557888888


Q ss_pred             CCceEEEEeeCCCCcC---eEEEEEccC-----CCEEEEEecCCcEEEEeCCCceeEEeecc
Q 001310          965 EELTCLKQWFPISSVP---ISQATFSCD-----CRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1103)
Q Consensus       965 ~~~~~~~~~~~~h~~~---v~~l~fs~d-----g~~l~t~~~dg~v~vWd~~~~~~~~~~~~ 1018 (1103)
                      .+|+........+...   +........     +.-+..++.++.+...|..+|+.+-++..
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~  278 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA  278 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence            8888776632212111   100111111     12235566778888999999998877774

>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12

Probab=92.75  E-value=15  Score=39.01  Aligned_cols=167  Identities=11%  Similarity=0.071  Sum_probs=90.8

Q ss_pred             ceEEEeCCCCceeEEeecC------CCceEEEEeeecCC----ccEEEEEECCCeEEEEEcCCCCeeEEecCCC------
Q 001310          466 TIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKEN----IHFIFSISVDGKIKAWLYDSLGARVDYDAPG------  529 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~----~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~------  529 (1103)
                      .|.+||+.+++.++++.-.      .+.+..+.+...+.    +...++-+..+.|.++|+.+++.........      
T Consensus        35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~  114 (287)
T PF03022_consen   35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDA  114 (287)
T ss_dssp             EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SS
T ss_pred             EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccc
Confidence            5778999999988776532      35567777765432    2334444555689999998876554332211      


Q ss_pred             -------------ccEEEEEEcc---CCCEEEEEecCCCCceeEEEEeCCC-----Ce---------eEEEEecccccCC
Q 001310          530 -------------LGCTRMAYSA---NGRRLFSCGTSKEGESFLVEWNESE-----GA---------IKRTYQGLQLQHN  579 (1103)
Q Consensus       530 -------------~~i~~~~~s~---dg~~l~~~~~~~~~~~~i~iwd~~~-----~~---------~~~~~~~~~~~~~  579 (1103)
                                   ..+..++.+|   +|+.|+.....+     -.+|.+.+     ..         .++.+ +..  ..
T Consensus       115 ~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-----~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k--~~  186 (287)
T PF03022_consen  115 GPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-----RKLYRVPTSVLRDPSLSDAQALASQVQDL-GDK--GS  186 (287)
T ss_dssp             EEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT------SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE-----
T ss_pred             cceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-----CcEEEEEHHHhhCccccccccccccceec-ccc--CC
Confidence                         1255566655   666666554322     12222221     10         11111 111  13


Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCC---eeEEEEc-CCCCCCCCceEEEec--CCCEEEEE
Q 001310          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKV---QLLTTID-AGGGLPENPRICFNK--NGTLLAVI  640 (1103)
Q Consensus       580 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---~~~~~~~-~~~~~~~v~~v~~s~--~g~~l~~~  640 (1103)
                      ....++++++|..+++--..+.|..|+..+.   +....+. .......+..+.+.+  +|.+.+..
T Consensus       187 ~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~s  253 (287)
T PF03022_consen  187 QSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVLS  253 (287)
T ss_dssp             SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEEE
T ss_pred             CCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEEE
Confidence            4567788898888888889999999998761   1222222 222234456777877  66554444

5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.60  E-value=4  Score=45.51  Aligned_cols=149  Identities=13%  Similarity=0.043  Sum_probs=82.4

Q ss_pred             CCeeEEEEcCCCCCEEEEEe-----------CCC-eEEEEEcCC--ce--eEEEeccCCCCEEEEEEccCCCEEEEEeCC
Q 001310          844 PTATSLAFNPHDNNVIAIGM-----------DDS-TILIYNARS--SE--VISKLEGHSKRVTGLVFSDALNILVSSGGD  907 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~-----------~dg-~v~iwd~~~--~~--~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d  907 (1103)
                      .....++|.+ +|+++++-.           ..+ .|.+++-.+  |+  ....+.........+++.++| ++++ +..
T Consensus        14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV~-~~~   90 (367)
T TIGR02604        14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYVA-TPP   90 (367)
T ss_pred             CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEEe-CCC
Confidence            4567889998 787766542           223 677776543  32  233444334456889999998 5553 444


Q ss_pred             CeEEEEEcCCC-cee--eeeeeecCCCc-ccCCCCceEEEEcCCCCEEEE-EeC-------------------CeEEEEE
Q 001310          908 AQIFVWDVDGW-GIQ--TCRSLQTPDGV-MTLAPSETHIQFHKDQTRFLL-VHE-------------------THLAIYE  963 (1103)
Q Consensus       908 g~I~iwd~~~~-~~~--~~~~~~~~~~~-~~~~~~v~~l~fs~dg~~l~~-~~d-------------------~~v~iwd  963 (1103)
                      ...++.|.+.. ...  ....+..+... .........++|.|||.+.++ +..                   +.+.-++
T Consensus        91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~  170 (367)
T TIGR02604        91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN  170 (367)
T ss_pred             eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence            43334455431 111  11122222211 001124678999999987775 411                   3466666


Q ss_pred             CCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      .++++. ..+..+ -.....++|+++|+++++-.
T Consensus       171 pdg~~~-e~~a~G-~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       171 PDGGKL-RVVAHG-FQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCCCeE-EEEecC-cCCCccceECCCCCEEEEcc
Confidence            665443 233333 34566899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.22  E-value=3.8  Score=44.29  Aligned_cols=159  Identities=8%  Similarity=0.046  Sum_probs=93.9

Q ss_pred             CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc--eeEEEe-ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee
Q 001310          845 TATSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKL-EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  921 (1103)
Q Consensus       845 ~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~--~~~~~l-~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~  921 (1103)
                      ..+.+-|.. .++.|+ +...|.+.=|-+...  ...-.+ ....++|.++.||+|.+.||+--.|.+|.+.+....+..
T Consensus        24 esngvFfDD-aNkqlf-avrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~  101 (657)
T KOG2377|consen   24 ESNGVFFDD-ANKQLF-AVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQ  101 (657)
T ss_pred             cccceeecc-CcceEE-EEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchh
Confidence            345566654 333333 333455555554421  112222 235679999999999999999999999999998654322


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe--cC
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF--VD  999 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~--~d  999 (1103)
                      .........+.    ..|....|+.. .-+|.-.+..+.+|-+.....-..+...|+-.|.=..|.++.+.+.-++  ..
T Consensus       102 l~~~~~ck~k~----~~IlGF~W~~s-~e~A~i~~~G~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~~~~  176 (657)
T KOG2377|consen  102 LEYTQECKTKN----ANILGFCWTSS-TEIAFITDQGIEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTTVLE  176 (657)
T ss_pred             hHHHHHhccCc----ceeEEEEEecC-eeEEEEecCCeEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeeccccc
Confidence            21111111111    24888889877 6667666766777776543332233556777888888888887644332  34


Q ss_pred             CcEEEEeCCCc
Q 001310         1000 GTLSIHEASNL 1010 (1103)
Q Consensus      1000 g~v~vWd~~~~ 1010 (1103)
                      +++-=+-+.++
T Consensus       177 n~lnpf~~~~~  187 (657)
T KOG2377|consen  177 NVLNPFHFRAG  187 (657)
T ss_pred             cccccEEEeec
Confidence            44444444433

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=92.10  E-value=9.6  Score=42.50  Aligned_cols=146  Identities=12%  Similarity=0.147  Sum_probs=87.8

Q ss_pred             eeEEEEecCCCEEEEEcCCeEE-EEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce----
Q 001310          805 VPCFALSKNDAYLFSASGGVIS-LYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE----  877 (1103)
Q Consensus       805 v~~l~~s~d~~~l~~~~dg~i~-iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~----  877 (1103)
                      ...+..++||.+++.+..|.+. -||-  +...  ..-......++++.+.+ ++.+++++ .+|.+. +....++    
T Consensus       241 f~~v~~~~dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~-dg~l~l~g-~~G~l~-~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSPDGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRA-DGGLWLLT-RGGGLY-VSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcCCCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcC-CCCEEEEe-CCceEE-EecCCCCcccc
Confidence            4556778999999999877643 3433  2221  11222455789999998 77777655 556543 3444443    


Q ss_pred             -eEEEeccC--CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE
Q 001310          878 -VISKLEGH--SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1103)
Q Consensus       878 -~~~~l~~h--~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~  954 (1103)
                       ........  ...+.++.|.+++..++ ++..|.+... .+.|+.-.  ..+...+   .......+.|.++++.+++|
T Consensus       316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a-~G~~G~v~~s-~D~G~tW~--~~~~~~~---~~~~ly~v~f~~~~~g~~~G  388 (398)
T PLN00033        316 FDFEEADIKSRGFGILDVGYRSKKEAWA-AGGSGILLRS-TDGGKSWK--RDKGADN---IAANLYSVKFFDDKKGFVLG  388 (398)
T ss_pred             cceeecccCCCCcceEEEEEcCCCcEEE-EECCCcEEEe-CCCCccee--EccccCC---CCcceeEEEEcCCCceEEEe
Confidence             22222211  23488999998876655 5677866555 34444211  1111111   11357899999999999999


Q ss_pred             eCCeEEEE
Q 001310          955 HETHLAIY  962 (1103)
Q Consensus       955 ~d~~v~iw  962 (1103)
                      .+|.|.-|
T Consensus       389 ~~G~il~~  396 (398)
T PLN00033        389 NDGVLLRY  396 (398)
T ss_pred             CCcEEEEe
Confidence            99987665

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=91.84  E-value=10  Score=42.31  Aligned_cols=103  Identities=9%  Similarity=0.102  Sum_probs=57.6

Q ss_pred             CCEEEEEEccCCCEEEEEe-----------CCC-eEEEEEcCC--CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEE
Q 001310          887 KRVTGLVFSDALNILVSSG-----------GDA-QIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1103)
Q Consensus       887 ~~V~~l~~s~dg~~l~s~s-----------~dg-~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  952 (1103)
                      .....|+|.++|+++++-.           ..+ .|.+++-.+  |+......+....      .....++|.++| +++
T Consensus        14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l------~~p~Gi~~~~~G-lyV   86 (367)
T TIGR02604        14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEEL------SMVTGLAVAVGG-VYV   86 (367)
T ss_pred             CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCC------CCccceeEecCC-EEE
Confidence            3467789999998887653           223 677776543  3332222222111      135789999999 444


Q ss_pred             EEeCCeEEEE-ECCC-------ceEEEEeeCC----CCcCeEEEEEccCCCEEEEEe
Q 001310          953 LVHETHLAIY-EAEE-------LTCLKQWFPI----SSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       953 ~~~d~~v~iw-d~~~-------~~~~~~~~~~----h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                       +....|..| |.+.       .+.+..-+..    +......++|.|||++.++-+
T Consensus        87 -~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G  142 (367)
T TIGR02604        87 -ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHG  142 (367)
T ss_pred             -eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecc
Confidence             444455544 4431       1122221211    134477899999998777555

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=91.59  E-value=43  Score=41.54  Aligned_cols=174  Identities=15%  Similarity=0.149  Sum_probs=103.7

Q ss_pred             CCCCeeEEEEe---c----CCCEEEEEcCCeEEEEEcCCc---------------eeeEEecC---CCCCeeEEEEcCCC
Q 001310          801 SQEAVPCFALS---K----NDAYLFSASGGVISLYIVMTF---------------KTILTIMP---PSPTATSLAFNPHD  855 (1103)
Q Consensus       801 ~~~~v~~l~~s---~----d~~~l~~~~dg~i~iwd~~~~---------------~~~~~~~~---~~~~i~~l~~s~~d  855 (1103)
                      ...+|..|+|+   .    ..++|++-....+.|+...-.               ..+.++..   ...+...++|+|.+
T Consensus        78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~  157 (765)
T PF10214_consen   78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD  157 (765)
T ss_pred             CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence            45688888887   2    235788777777888772211               12223321   22355677888877


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1103)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1103)
                      .+.||+.+..|...||++..+...     +.. .          +-+.....|.| +.|...           .      
T Consensus       158 ~~q~AiVD~~G~Wsvw~i~~~~~~-----~~~-~----------~~~~~~~~gsi-~~d~~e-----------~------  203 (765)
T PF10214_consen  158 QRQFAIVDEKGNWSVWDIKGRPKR-----KSS-N----------LRLSRNISGSI-IFDPEE-----------L------  203 (765)
T ss_pred             cceEEEEeccCcEEEEEecccccc-----CCc-c----------eeeccCCCccc-cCCCcc-----------c------
Confidence            778888888888888887211100     000 1          11112222333 222221           0      


Q ss_pred             CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEE-EeeCCCCcCeEEEEEccCC-CEEEEEecCCcEEEEeCCCc
Q 001310          936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLK-QWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       936 ~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~-~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                       ..-..+.|.++-..|++.....+.++|+++..... .........|..+.-+++. .+++.- ....|...++.+.
T Consensus       204 -s~w~rI~W~~~~~~lLv~~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiL-Ts~eiiw~~~~~~  278 (765)
T PF10214_consen  204 -SNWKRILWVSDSNRLLVCNRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFIL-TSKEIIWLDVKSS  278 (765)
T ss_pred             -CcceeeEecCCCCEEEEEcCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEE-ecCeEEEEEccCC
Confidence             13457889999999999999999999999876643 2223346788889988872 222222 2367888888773

These proteins are found in fungi.

>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]

Probab=91.07  E-value=0.33  Score=56.41  Aligned_cols=145  Identities=17%  Similarity=0.205  Sum_probs=84.4

Q ss_pred             CeEEEEEcC--CceeeEEe-----cCCCCCeeEEEEcCC--CCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEE
Q 001310          823 GVISLYIVM--TFKTILTI-----MPPSPTATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV  893 (1103)
Q Consensus       823 g~i~iwd~~--~~~~~~~~-----~~~~~~i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  893 (1103)
                      |...+||+.  .|+....+     ......+.-+.|.|.  +.-++..+..+++|++....+... ..+.+|...++.++
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a  231 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA  231 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence            677888875  34332222     222334444444431  456777888889998887765432 44556776666554


Q ss_pred             -----------EccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC-------CCE--EEE
Q 001310          894 -----------FSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-------QTR--FLL  953 (1103)
Q Consensus       894 -----------~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-------g~~--l~~  953 (1103)
                                 .||||+.+|.++.||.++.|-+.-......+++..-+.|..+ ..|..+ |...       +.+  +++
T Consensus       232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~-p~vC~l-c~~~~~~~v~i~~w~~~It  309 (1283)
T KOG1916|consen  232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKH-PRVCWL-CHKQEILVVSIGKWVLRIT  309 (1283)
T ss_pred             HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCC-Cceeee-eccccccCCccceeEEEEe
Confidence                       589999999999999999998764333333444444333321 023333 4332       222  233


Q ss_pred             Ee--CCeEEEEECCCceEE
Q 001310          954 VH--ETHLAIYEAEELTCL  970 (1103)
Q Consensus       954 ~~--d~~v~iwd~~~~~~~  970 (1103)
                      +.  +..+++|.....+|+
T Consensus       310 ttd~nre~k~w~~a~w~Cl  328 (1283)
T KOG1916|consen  310 TTDVNREEKFWAEAPWQCL  328 (1283)
T ss_pred             cccCCcceeEeeccchhhh
Confidence            32  346888888777776

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=90.80  E-value=35  Score=44.11  Aligned_cols=150  Identities=15%  Similarity=0.196  Sum_probs=87.2

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .|-..++.|.-+|+|.++ =.  .|+.++.||..++.         |..-          -..-...++.++-.-||+..
T Consensus       360 aH~A~LTgv~~~~~ge~l-Rl--Hd~~LY~~d~~~~~---------Wk~~----------~~~~d~~~S~Ls~qgdG~lY  417 (1774)
T PF11725_consen  360 AHIAHLTGVHTDPDGEQL-RL--HDDRLYQFDPNTAR---------WKPP----------PDKSDTPFSSLSRQGDGKLY  417 (1774)
T ss_pred             HHHHHhhccccCCCCCeE-Ee--ecCceeeeccccce---------ecCC----------CCcccchhhhhcccCCCceE
Confidence            466677888888888753 22  56888888876542         2100          01123455556666677766


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC------cee--EEeec
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG------SRT--YSFEG  483 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~------~~~--~~~~~  483 (1103)
                      | =+.+   .+-|+..+....      ..-..|.+...+++|+- .+.++-....+.+|++...      ++.  ..+.+
T Consensus       418 A-k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~d  486 (1774)
T PF11725_consen  418 A-KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLAD  486 (1774)
T ss_pred             e-cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccC
Confidence            6 2222   244555543111      12335777888999982 3666666667799998654      111  22233


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  518 (1103)
                      ......++.++  ++  .|+.+..+|.++.=++..
T Consensus       487 G~a~A~~VgLs--~d--rLFvADseGkLYsa~l~~  517 (1774)
T PF11725_consen  487 GKAQAQSVGLS--ND--RLFVADSEGKLYSADLPA  517 (1774)
T ss_pred             Cchhhhheeec--CC--eEEEEeCCCCEEeccccc
Confidence            33345556663  22  688888899887766653

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=90.72  E-value=12  Score=36.95  Aligned_cols=146  Identities=12%  Similarity=0.164  Sum_probs=87.2

Q ss_pred             CEEEEEeCCCeEEEEEcC--CceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC------eEEE---EEcCCCceeeeee
Q 001310          857 NVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA------QIFV---WDVDGWGIQTCRS  925 (1103)
Q Consensus       857 ~~lasg~~dg~v~iwd~~--~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg------~I~i---wd~~~~~~~~~~~  925 (1103)
                      ..|..+.....|.+|++.  ..+.+.+|..- +.|..++++..|++|+|--.+.      .+++   |+....+.... .
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v-~  106 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV-R  106 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE-E
Confidence            455555667789999998  34566777644 7899999999999999964322      4555   44331111010 0


Q ss_pred             eecCCCc------------------ccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceE-EEE--ee------CCC-
Q 001310          926 LQTPDGV------------------MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC-LKQ--WF------PIS-  977 (1103)
Q Consensus       926 ~~~~~~~------------------~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~-~~~--~~------~~h-  977 (1103)
                      .+. .||                  .+...++.+++.-|-...|++|.++.+.+|.+..... ...  +.      -.| 
T Consensus       107 vRi-aG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~  185 (215)
T PF14761_consen  107 VRI-AGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHI  185 (215)
T ss_pred             EEE-cccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhhee
Confidence            000 010                  0111367888888888888899999999998864443 110  00      011 


Q ss_pred             -CcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          978 -SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       978 -~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                       +-....++|.  +.|+|..+ +-.+++..+.
T Consensus       186 ~~~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~  214 (215)
T PF14761_consen  186 DNFKPTQVAIC--EGYIAVMS-DLEVLVLKLE  214 (215)
T ss_pred             cCceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence             2234455554  45777665 5567777653

>KOG2377 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.57  E-value=1.7  Score=46.88  Aligned_cols=123  Identities=11%  Similarity=0.141  Sum_probs=81.4

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      .+++|.++.||+|.+ ++|+--.|++|.+.+....+.......               ..+..+..|....|+.+ .-+|
T Consensus        65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~~---------------~ck~k~~~IlGF~W~~s-~e~A  127 (657)
T KOG2377|consen   65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYTQ---------------ECKTKNANILGFCWTSS-TEIA  127 (657)
T ss_pred             CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHHH---------------HhccCcceeEEEEEecC-eeEE
Confidence            345999999999998 799999999999999854432221000               01223456888999865 7788


Q ss_pred             EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310          413 VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  475 (1103)
                      .....| +.+|-+....  +..+..+.|...|..-.|.++.+-.+|+++-..+++.=+-+.++
T Consensus       128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~~  187 (657)
T KOG2377|consen  128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRAG  187 (657)
T ss_pred             EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEeec
Confidence            777777 7888776543  33334567888999999999988433333323444443444443

>PHA02790 Kelch-like protein; Provisional

Probab=90.41  E-value=14  Score=42.95  Aligned_cols=148  Identities=9%  Similarity=0.006  Sum_probs=71.8

Q ss_pred             CccEEEEEECCC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310          498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1103)
Q Consensus       498 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1103)
                      ++.+.+.|+.++  .+..||..+.+-..............+..-+|+..+.|+.++. ...+..||..+.+-...-.-..
T Consensus       318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~-~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSET-DTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCC-CccEEEEeCCCCEEEeCCCCCC
Confidence            556667776543  4677776543322211111111122223346766677665332 3557889988765543221111


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----CeEEEEE
Q 001310          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----NRIKILE  650 (1103)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----g~i~iw~  650 (1103)
                       .......++  -++...+.|   |.+.+||..+++-...-+....... .+++ .-+|+..++|+.+     ..+..||
T Consensus       397 -~r~~~~~~~--~~~~IYv~G---G~~e~ydp~~~~W~~~~~m~~~r~~-~~~~-v~~~~IYviGG~~~~~~~~~ve~Yd  468 (480)
T PHA02790        397 -PHYKSCALV--FGRRLFLVG---RNAEFYCESSNTWTLIDDPIYPRDN-PELI-IVDNKLLLIGGFYRGSYIDTIEVYN  468 (480)
T ss_pred             -ccccceEEE--ECCEEEEEC---CceEEecCCCCcEeEcCCCCCCccc-cEEE-EECCEEEEECCcCCCcccceEEEEE
Confidence             011222222  234444444   3577899887665433322211111 1222 2357777887754     3466777


Q ss_pred             cCCC
Q 001310          651 TPES  654 (1103)
Q Consensus       651 ~~~~  654 (1103)
                      ..++
T Consensus       469 ~~~~  472 (480)
T PHA02790        469 NRTY  472 (480)
T ss_pred             CCCC
Confidence            6655

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=90.30  E-value=8.3  Score=45.61  Aligned_cols=173  Identities=13%  Similarity=0.123  Sum_probs=93.1

Q ss_pred             CCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEE
Q 001310          814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLV  893 (1103)
Q Consensus       814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~  893 (1103)
                      ..+++++..+.|.||+........    ...+...+...|   ..  +...|+.+..|-          ..|+  |+.|.
T Consensus        49 ~n~LFiA~~s~I~Vy~~d~l~~~p----~~~p~~~~~t~p---~~--~~~~D~~~s~~p----------~PHt--IN~i~  107 (717)
T PF08728_consen   49 RNLLFIAYQSEIYVYDPDGLTQLP----SRKPCLRFDTKP---EF--TSTPDRLISTWP----------FPHT--INFIK  107 (717)
T ss_pred             CCEEEEEECCEEEEEecCCccccc----ccccccccccCc---cc--cccccccccCCC----------CCce--eeEEE
Confidence            788888999999999986432211    011112222222   11  122333333332          1121  33332


Q ss_pred             Ec--cCCCEEEEEeCCCeEEEEEcCCC-----ce----e--eeeeeecCCCcccCCCCceEEEEc--CCCCEEEEEeCC-
Q 001310          894 FS--DALNILVSSGGDAQIFVWDVDGW-----GI----Q--TCRSLQTPDGVMTLAPSETHIQFH--KDQTRFLLVHET-  957 (1103)
Q Consensus       894 ~s--~dg~~l~s~s~dg~I~iwd~~~~-----~~----~--~~~~~~~~~~~~~~~~~v~~l~fs--~dg~~l~~~~d~-  957 (1103)
                      ..  -+...|+.+.+||.|.+|.++.=     +.    .  ..+....+.-+........++++.  ...++||+++++ 
T Consensus       108 v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~  187 (717)
T PF08728_consen  108 VGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQ  187 (717)
T ss_pred             ecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCc
Confidence            22  24467888888888888866320     00    0  000000001111112467889998  888999998554 


Q ss_pred             eEEEEECCC--ceEEEEeeCCCCcCeEEEEEccCC---C---EEEEEecCCcEEEEeC
Q 001310          958 HLAIYEAEE--LTCLKQWFPISSVPISQATFSCDC---R---MVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       958 ~v~iwd~~~--~~~~~~~~~~h~~~v~~l~fs~dg---~---~l~t~~~dg~v~vWd~ 1007 (1103)
                      .|.||-...  .+....-...|...|-+|+|-++.   .   +|++++-.|.+-+|++
T Consensus       188 ~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  188 EVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            455554432  222111111356789999998754   2   6888889999999888

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=90.19  E-value=0.81  Score=31.66  Aligned_cols=33  Identities=21%  Similarity=0.260  Sum_probs=26.7

Q ss_pred             cCceEEEecCCCc--eEEEEEcCCCcEEEEECCCC
Q 001310          335 SSPMSMDFHPVQH--TLLLVGTNVGDTGLWDVNSG  367 (1103)
Q Consensus       335 ~~V~~v~~spdg~--~llasgs~d~~v~iwd~~~~  367 (1103)
                      +.|.+++|||+..  -||+..-.-+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            4689999997543  37888888899999999864

It contains a characteristic DLL sequence motif.

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.87  E-value=5.8  Score=49.22  Aligned_cols=151  Identities=17%  Similarity=0.185  Sum_probs=97.4

Q ss_pred             eCCCeEEEEEcCCceeEEEeccCCCCEEEEEE--------ccCCCEEEEEeCCCeEEEEEcCCCceeeee-----eeecC
Q 001310          863 MDDSTILIYNARSSEVISKLEGHSKRVTGLVF--------SDALNILVSSGGDAQIFVWDVDGWGIQTCR-----SLQTP  929 (1103)
Q Consensus       863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--------s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~-----~~~~~  929 (1103)
                      +-|+.+.+|+..++.....+.+-+..|..+..        -|.=+++...+.--.|.++-+.-.+.....     .+...
T Consensus        96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~  175 (1311)
T KOG1900|consen   96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS  175 (1311)
T ss_pred             EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence            35788999999998878888877777777654        333355655566666777765543321110     11111


Q ss_pred             CCcccCCCCceEEEEcCCCCEEEEEeCCeEEE--EECCCc---e-EE----------------EEeeCCCCcCeEEEEEc
Q 001310          930 DGVMTLAPSETHIQFHKDQTRFLLVHETHLAI--YEAEEL---T-CL----------------KQWFPISSVPISQATFS  987 (1103)
Q Consensus       930 ~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~i--wd~~~~---~-~~----------------~~~~~~h~~~v~~l~fs  987 (1103)
                      ..    +..|.++....+|+.+.+|.||.|+-  |...+|   + |.                ..+...+..+|..++..
T Consensus       176 ~d----g~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID  251 (1311)
T KOG1900|consen  176 VD----GVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITID  251 (1311)
T ss_pred             cC----CceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEec
Confidence            11    13588999899999999998885543  222221   1 10                11122457799999998


Q ss_pred             cCCCEEEEEecCCcEEEEeCCC-ceeEEeec
Q 001310          988 CDCRMVFTSFVDGTLSIHEASN-LEVQCRIL 1017 (1103)
Q Consensus       988 ~dg~~l~t~~~dg~v~vWd~~~-~~~~~~~~ 1017 (1103)
                      ..-..|.+-+..|+|++||+.+ |.-..++.
T Consensus       252 ~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~  282 (1311)
T KOG1900|consen  252 NSRNILYVLSEKGTVSAYDIGGNGLGGPRFV  282 (1311)
T ss_pred             cccceeeeeccCceEEEEEccCCCccceeee
Confidence            8888899999999999999987 54443433

>COG5276 Uncharacterized conserved protein [Function unknown]

Probab=89.82  E-value=26  Score=36.07  Aligned_cols=276  Identities=9%  Similarity=0.050  Sum_probs=130.8

Q ss_pred             CceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeE
Q 001310          579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD  658 (1103)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  658 (1103)
                      +.+..+.++  +++++.+..+.-++|.|+.+...-..+..-....-..++..  .|++..++..|.-+.+.|+.+.....
T Consensus        87 ~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~v--sGn~aYVadlddgfLivdvsdpssP~  162 (370)
T COG5276          87 DLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYV--SGNYAYVADLDDGFLIVDVSDPSSPQ  162 (370)
T ss_pred             hhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEe--cCCEEEEeeccCcEEEEECCCCCCce
Confidence            456667775  45778888888899999987654433322111111233443  48899888866668888887653221


Q ss_pred             ---eccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccc
Q 001310          659 ---AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN  735 (1103)
Q Consensus       659 ---~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~  735 (1103)
                         ...........++++                        |++-..+..|+.+.+-|+..........    ......
T Consensus       163 lagrya~~~~d~~~v~IS------------------------Gn~AYvA~~d~GL~ivDVSnp~sPvli~----~~n~g~  214 (370)
T COG5276         163 LAGRYALPGGDTHDVAIS------------------------GNYAYVAWRDGGLTIVDVSNPHSPVLIG----SYNTGP  214 (370)
T ss_pred             eeeeeccCCCCceeEEEe------------------------cCeEEEEEeCCCeEEEEccCCCCCeEEE----EEecCC
Confidence               112222222223333                        4455555566777777765322211111    011223


Q ss_pred             cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1103)
Q Consensus       736 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  815 (1103)
                      .+.++..+++..+++....  -+.+-|....+           .+.++....-           .....++.+.++  ++
T Consensus       215 g~~sv~vsdnr~y~vvy~e--gvlivd~s~~s-----------sp~~~gsyet-----------~~p~~~s~v~Vs--~~  268 (370)
T COG5276         215 GTYSVSVSDNRAYLVVYDE--GVLIVDVSGPS-----------SPTVFGSYET-----------SNPVSISTVPVS--GE  268 (370)
T ss_pred             ceEEEEecCCeeEEEEccc--ceEEEecCCCC-----------CceEeecccc-----------CCcccccceecc--cc
Confidence            5677777766655444333  23333332221           1122211100           112222223333  33


Q ss_pred             EEEEEc-CCeEEEEEcCCce---eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEE
Q 001310          816 YLFSAS-GGVISLYIVMTFK---TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTG  891 (1103)
Q Consensus       816 ~l~~~~-dg~i~iwd~~~~~---~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1103)
                      +...+. +.-+.+-|+....   ....+.........+..+   +.++..+..+ +..+-+...-+......+-...+.+
T Consensus       269 ~~Yvadga~gl~~idisnp~spfl~ss~~t~g~~a~gi~ay---~~y~yiadkn-~g~vV~~s~~s~m~~~~g~~ti~~s  344 (370)
T COG5276         269 YAYVADGAKGLPIIDISNPPSPFLSSSLDTAGYQAAGIRAY---GNYNYIADKN-TGAVVDASPPSMMDKRPGRPTIGQS  344 (370)
T ss_pred             eeeeeccccCceeEeccCCCCCchhccccCCCccccceEEe---cCeeEeccCC-ceEEEeCCChhhcccccCcceEeee
Confidence            333333 3334444544221   111122122233334333   2244444443 3444454443333333333334445


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEcC
Q 001310          892 LVFSDALNILVSSGGDAQIFVWDVD  916 (1103)
Q Consensus       892 l~~s~dg~~l~s~s~dg~I~iwd~~  916 (1103)
                      .+.+-+.+.+-+...++.+.||+..
T Consensus       345 ~~v~~~~q~~y~~d~~~gl~i~~~~  369 (370)
T COG5276         345 CDVSVDTQIIYSTDYNGGLSIIEYL  369 (370)
T ss_pred             cceEEEeeEEEEeecCCCEEEEEec
Confidence            5555566778888889989999853

>COG1520 FOG: WD40-like repeat [Function unknown]

Probab=89.49  E-value=40  Score=37.70  Aligned_cols=202  Identities=17%  Similarity=0.144  Sum_probs=105.8

Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      ||+.+ ++..+|.|.-.|..++..+-..... +....+..-.+..+|+   ++.++.++.+...|..+|+.+........
T Consensus        68 dg~v~-~~~~~G~i~A~d~~~g~~~W~~~~~-~~~~~~~~~~~~~~G~---i~~g~~~g~~y~ld~~~G~~~W~~~~~~~  142 (370)
T COG1520          68 DGTVY-VGTRDGNIFALNPDTGLVKWSYPLL-GAVAQLSGPILGSDGK---IYVGSWDGKLYALDASTGTLVWSRNVGGS  142 (370)
T ss_pred             CCeEE-EecCCCcEEEEeCCCCcEEecccCc-CcceeccCceEEeCCe---EEEecccceEEEEECCCCcEEEEEecCCC
Confidence            44333 3356676777777776533211111 1112233333344786   77888899999999889999887766551


Q ss_pred             -ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC---ccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       487 -~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                       .+..-.+   .....+..++.++.+...+..+++.........   ..+..-....++. ++.+..+ . +..+.-.|.
T Consensus       143 ~~~~~~~v---~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~-~-~~~~~a~~~  216 (370)
T COG1520         143 PYYASPPV---VGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDG-Y-DGILYALNA  216 (370)
T ss_pred             eEEecCcE---EcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCC-C-cceEEEEEc
Confidence             1111111   122244444477888888888777766544332   1111111122333 3333221 1 335777788


Q ss_pred             CCCeeEEEEecccccC-CceEEEEEcCC-----CCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310          563 SEGAIKRTYQGLQLQH-NSVSVVHFDTA-----KDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~-~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  619 (1103)
                      .+|...-......... ..+........     +..++.++.++.+...|..+++.+-.....
T Consensus       217 ~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~  279 (370)
T COG1520         217 EDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPAG  279 (370)
T ss_pred             cCCcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence            7887766543222000 00100001011     123456677788889999999998887654

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=89.38  E-value=30  Score=39.18  Aligned_cols=272  Identities=16%  Similarity=0.099  Sum_probs=133.6

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      .|.++.|.-.|.  +-.|+.|| +..+|..+|+.+....                  .....+|.++..+-.|+ |.+|+
T Consensus       166 ~V~aLv~D~~g~--lWvgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-LWVGT  223 (671)
T COG3292         166 PVVALVFDANGR--LWVGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-LWVGT  223 (671)
T ss_pred             cceeeeeeccCc--EEEecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-EEEEe
Confidence            789999999997  44566655 6778877777654210                  01124566665555554 56677


Q ss_pred             CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCC--CceEEEE
Q 001310          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHG--APVYSLC  492 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~--~~v~~~~  492 (1103)
                      .+| |.+.+.++.+....  -..-..+.|..+.-..+|.   +-.|+..|-.+. ....+...... +-|.  ..|.++.
T Consensus       224 dqG-v~~~e~~G~~~sn~--~~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~-~l~rq~Lq~~~~~~~l~~S~vnsL~  296 (671)
T COG3292         224 DQG-VYLQEAEGWRASNW--GPMLPSGNILLLVQDAQGE---LWIGTENGLWRT-RLPRQGLQIPLSKMHLGVSTVNSLW  296 (671)
T ss_pred             ccc-eEEEchhhcccccc--CCCCcchheeeeecccCCC---EEEeecccceeE-ecCCCCccccccccCCcccccccee
Confidence            777 78877766321110  0011233455544444444   444555543322 32333222222 2222  2233333


Q ss_pred             eeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc--CCCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1103)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1103)
                      .  +.+| -+-+++.+|.+++-+-+-..........+..+...+..|  .+..+-....    .+.+.+-+..+|..++.
T Consensus       297 ~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~ns----~g~L~van~stG~~v~s  369 (671)
T COG3292         297 L--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLNS----IGELMVANGSTGELVRS  369 (671)
T ss_pred             e--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeeccc----cceEEEecCCCCcEEEE
Confidence            2  3333 456666666665543221111111111111111112222  1111111111    22355556667777766


Q ss_pred             EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310          571 YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1103)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i  648 (1103)
                      .....  ...|+.+.+.. +..+-.|+...-+..|+..+ +..+...... ...+|..+.-.|+++ |..|+.+|.++.
T Consensus       370 v~q~R--g~nit~~~~d~-~g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~  443 (671)
T COG3292         370 VHQLR--GMNITTTLEDS-RGRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR  443 (671)
T ss_pred             eeecc--ccccchhhhcc-CCcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence            44433  35577777766 44566677665566677666 3333333222 234577777788887 777888775543

>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]

Probab=89.38  E-value=44  Score=37.98  Aligned_cols=64  Identities=16%  Similarity=0.100  Sum_probs=41.7

Q ss_pred             ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC-CceEEEEeeecCCccEEEEEECCCe
Q 001310          440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-APVYSLCPHAKENIHFIFSISVDGK  510 (1103)
Q Consensus       440 h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~l~s~~~dg~  510 (1103)
                      ...+|.++.+...|.   +..|+.|| +..+|..+++.++.-.... .+|..+....  . ..+..|+.+|.
T Consensus       163 ~d~~V~aLv~D~~g~---lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~--q-g~LWVGTdqGv  227 (671)
T COG3292         163 KDTPVVALVFDANGR---LWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADV--Q-GRLWVGTDQGV  227 (671)
T ss_pred             cCccceeeeeeccCc---EEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHh--c-CcEEEEeccce
Confidence            445788999998886   67778777 6778888888776554433 4555554322  2 24666666654

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=89.34  E-value=1.3  Score=30.73  Aligned_cols=32  Identities=22%  Similarity=0.223  Sum_probs=26.5

Q ss_pred             ccEEEEEECCCC---CEEEEEeCCCeEEEEEecCC
Q 001310          397 VSVNRVVWSPDG---SLLGVAYSKHIVQLYAYHGG  428 (1103)
Q Consensus       397 ~~V~~~~~spdg---~~las~~~d~~i~iwd~~~~  428 (1103)
                      +.|.++.|||+.   .+||.+-..+.|.|+|+.++
T Consensus         1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~   35 (43)
T PF10313_consen    1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN   35 (43)
T ss_pred             CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence            468999999854   58888888899999999853

It contains a characteristic DLL sequence motif.

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=89.30  E-value=1.1  Score=30.52  Aligned_cols=33  Identities=12%  Similarity=0.232  Sum_probs=23.1

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCC--CcEEEE
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNV--GDTGLW  362 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d--~~v~iw  362 (1103)
                      +......-...+|||||++++.++..+  |.-.||
T Consensus         4 ~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    4 LTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             ES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            334455778899999999888777776  666665

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=89.20  E-value=7.9  Score=42.82  Aligned_cols=100  Identities=12%  Similarity=0.106  Sum_probs=61.1

Q ss_pred             CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEe-------eccCCceeeEEEEEC
Q 001310          978 SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC-------YCSCLHVYPHAIAAH 1050 (1103)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~~~~~ 1050 (1103)
                      .-.|..+..|+.|..++-+|.+|.+.++ +.     .+|.+..+..++  ...+.|=-       .-.+..+.-.-++||
T Consensus       103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMe-Lp-----~rwG~~s~~eDg--k~~v~CRt~~i~~~~ftss~~ltl~Qa~WH  174 (741)
T KOG4460|consen  103 LFEVYQVLLSPTGSHVALIGIKGLMVME-LP-----KRWGKNSEFEDG--KSTVNCRTTPVAERFFTSSTSLTLKQAAWH  174 (741)
T ss_pred             eEEEEEEEecCCCceEEEecCCeeEEEE-ch-----hhcCccceecCC--CceEEEEeecccceeeccCCceeeeecccc
Confidence            3456778888999999988889865543 21     112222222211  01122211       111233444567888


Q ss_pred             CCC--CcEEEEEecCCcEEEEccCCCCCCCccCCccc
Q 001310         1051 PLK--PTQFAVGLTNGEVYVIEPNEPGDTWAVLPPDE 1085 (1103)
Q Consensus      1051 p~~--~~~l~~~~~dg~v~vw~~~~~~~~w~~~~~~~ 1085 (1103)
                      |+.  ...|+.-+.|+.|++|++++...-|..++++-
T Consensus       175 P~S~~D~hL~iL~sdnviRiy~lS~~telylqpgepg  211 (741)
T KOG4460|consen  175 PSSILDPHLVLLTSDNVIRIYSLSEPTELYLQPGEPG  211 (741)
T ss_pred             CCccCCceEEEEecCcEEEEEecCCcchhhccCCCcC
Confidence            874  45677778999999999999988888776653

>PLN00033 photosystem II stability/assembly factor; Provisional

Probab=89.12  E-value=43  Score=37.52  Aligned_cols=149  Identities=8%  Similarity=0.030  Sum_probs=86.1

Q ss_pred             eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee--
Q 001310          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ--  921 (1103)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~--  921 (1103)
                      ...+..++ ++.+++.+.....++-||-  |..  ...-......++++.|.+++.+++++ .+|.+ +|..+.++.-  
T Consensus       241 f~~v~~~~-dG~~~~vg~~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~  315 (398)
T PLN00033        241 FSTVNRSP-DGDYVAVSSRGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED  315 (398)
T ss_pred             eeeEEEcC-CCCEEEEECCccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence            34456667 7777776654433333432  221  11112234568899999998887754 66654 4455544311  


Q ss_pred             -eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEee--CCCCcCeEEEEEccCCCEEEEEec
Q 001310          922 -TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWF--PISSVPISQATFSCDCRMVFTSFV  998 (1103)
Q Consensus       922 -~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~--~~h~~~v~~l~fs~dg~~l~t~~~  998 (1103)
                       ....+......    ..+.++.|.+++..+++|..|.+.... +.|+.-....  ..-......+.|.++++.+++| .
T Consensus       316 ~~f~~~~~~~~~----~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~  389 (398)
T PLN00033        316 FDFEEADIKSRG----FGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-N  389 (398)
T ss_pred             cceeecccCCCC----cceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-C
Confidence             11111111111    148899999999999999998777664 3344322211  1224568899998887777754 6


Q ss_pred             CCcEEEE
Q 001310          999 DGTLSIH 1005 (1103)
Q Consensus       999 dg~v~vW 1005 (1103)
                      +|.|.-|
T Consensus       390 ~G~il~~  396 (398)
T PLN00033        390 DGVLLRY  396 (398)
T ss_pred             CcEEEEe
Confidence            8877655

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=88.88  E-value=1.7  Score=46.78  Aligned_cols=157  Identities=10%  Similarity=0.086  Sum_probs=99.1

Q ss_pred             CCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceee-EEec-CCCC----Cee-EEEEcCCCCCEEEEEeCCCeEEEE-E
Q 001310          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-LTIM-PPSP----TAT-SLAFNPHDNNVIAIGMDDSTILIY-N  872 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~-~~~~-~~~~----~i~-~l~~s~~d~~~lasg~~dg~v~iw-d  872 (1103)
                      ....+..+-..|||+.+..-+...+.++++.+.... +++. ...+    .|+ ++..-. ++.-|.+++.||.|.-| |
T Consensus       219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd  297 (733)
T COG4590         219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD  297 (733)
T ss_pred             CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence            456788889999999999988888999988754322 1221 1112    222 222233 67788889999998887 4


Q ss_pred             cCCc-e----eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310          873 ARSS-E----VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       873 ~~~~-~----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  947 (1103)
                      ...+ .    .++.++-...++..+.--.+.+-+++-+..|++.++.....+...   .+...      ..+..++|||.
T Consensus       298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL---~~~~~------~~~~~~~~Sp~  368 (733)
T COG4590         298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLL---FERAY------QAPQLVAMSPN  368 (733)
T ss_pred             eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCccee---hhhhh------cCcceeeeCcc
Confidence            4332 1    122222222344444433345667888888988887665533211   11111      14668999999


Q ss_pred             CCEEEEEeCCeEEEEECCCc
Q 001310          948 QTRFLLVHETHLAIYEAEEL  967 (1103)
Q Consensus       948 g~~l~~~~d~~v~iwd~~~~  967 (1103)
                      +.+|++-..|.++++.+++.
T Consensus       369 ~~~Ll~e~~gki~~~~l~Nr  388 (733)
T COG4590         369 QAYLLSEDQGKIRLAQLENR  388 (733)
T ss_pred             cchheeecCCceEEEEecCC
Confidence            99999988889999887754

>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=88.76  E-value=5.7  Score=49.29  Aligned_cols=172  Identities=14%  Similarity=0.176  Sum_probs=100.6

Q ss_pred             cccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310          318 SFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1103)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  397 (1103)
                      .+..+|...+..+. |...=..+-+-|.=.+  |--+.|+.+.+|+.+++.....                   +.+-+.
T Consensus        63 ~v~~IP~el~eq~~-~~~~~~~mGiFpeI~R--aWiTiDn~L~lWny~~~~e~~~-------------------~d~~sh  120 (1311)
T KOG1900|consen   63 QVVNIPDELLEQFS-NIECKTDMGIFPEIGR--AWITIDNNLFLWNYESDNELAE-------------------YDGLSH  120 (1311)
T ss_pred             ccccCCHHHHHHhc-Ccceeeeeccchhhcc--eEEEeCCeEEEEEcCCCCcccc-------------------ccchhh
Confidence            44566776666555 4434455555555443  3334679999999999655432                   333334


Q ss_pred             cEEEEE--------ECCCCCEEEEEeCCCeEEEEEecCCCccccce------EeccccccEEEEEEecCCCceEEEEEcC
Q 001310          398 SVNRVV--------WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL------EIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1103)
Q Consensus       398 ~V~~~~--------~spdg~~las~~~d~~i~iwd~~~~~~~~~~~------~l~~h~~~v~~~~~s~d~~~~~l~s~~~  463 (1103)
                      .|..|.        |-|.=++|++...--.|.++-+.-.+......      .+.-....|+|+....+|+  +++ +|.
T Consensus       121 tIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~-~G~  197 (1311)
T KOG1900|consen  121 TILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFF-AGR  197 (1311)
T ss_pred             hheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEE-eec
Confidence            444443        34444566665556667777665433211111      1222345788999888888  455 555


Q ss_pred             CCceEEEeC----CCC---c-e----------------eEEee-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310          464 DKTIKVWDA----VTG---S-R----------------TYSFE-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1103)
Q Consensus       464 d~~i~iwd~----~~~---~-~----------------~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  518 (1103)
                      ||  .+|.+    ..|   + +                +..+. .+..+|..+.+..  ....+.+-+..|+|.+|++..
T Consensus       198 dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~  273 (1311)
T KOG1900|consen  198 DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG  273 (1311)
T ss_pred             CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence            66  44443    111   1 1                11223 4667898888843  446888999999999999876

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=88.55  E-value=13  Score=36.14  Aligned_cols=150  Identities=11%  Similarity=0.070  Sum_probs=79.5

Q ss_pred             CccEEEEEECCC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310          498 NIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1103)
Q Consensus       498 ~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1103)
                      ++.++.+.+.-|  .|++||+.+++...........+..=-...-|.++..-.-   .++.-..+|..+-+.+..+.-..
T Consensus        55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G  131 (262)
T COG3823          55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG  131 (262)
T ss_pred             CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence            456677766544  5999999988877654443212211111122333332221   25556778888777666554322


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC---CCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL---PENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~---~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                          .-..++  .|+..++.+....+++.-|.++.....++......   ...+.+.|- ||...|-.-.+..|...+..
T Consensus       132 ----eGWgLt--~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG~lyANVw~t~~I~rI~p~  204 (262)
T COG3823         132 ----EGWGLT--SDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DGELYANVWQTTRIARIDPD  204 (262)
T ss_pred             ----cceeee--cCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-ccEEEEeeeeecceEEEcCC
Confidence                223333  45666777777778888887776554444322111   123334443 46555555555555555555


Q ss_pred             CCCee
Q 001310          653 ESNSV  657 (1103)
Q Consensus       653 ~~~~~  657 (1103)
                      +++.+
T Consensus       205 sGrV~  209 (262)
T COG3823         205 SGRVV  209 (262)
T ss_pred             CCcEE
Confidence            55444

>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein

Probab=88.44  E-value=42  Score=36.63  Aligned_cols=71  Identities=8%  Similarity=-0.060  Sum_probs=35.7

Q ss_pred             CccEEEEEECC-----CeEEEEEcCCCCeeEEecCCC-ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          498 NIHFIFSISVD-----GKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       498 ~~~~l~s~~~d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      ++.+.+.|+..     ..+..||+.+.+-...-.... ......+...+++..+.++.+......+.+||+.+.+-.
T Consensus       123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~  199 (323)
T TIGR03548       123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ  199 (323)
T ss_pred             CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence            44566666642     346777776544322111111 122223334566677776653322233678898876543

Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.38  E-value=38  Score=36.97  Aligned_cols=151  Identities=11%  Similarity=0.111  Sum_probs=85.9

Q ss_pred             CCCCeeEEEEec-CCCEEEEEcCCe------EEEEEcCC--c--eee-----EEecCCCC--------CeeEEEEcCCCC
Q 001310          801 SQEAVPCFALSK-NDAYLFSASGGV------ISLYIVMT--F--KTI-----LTIMPPSP--------TATSLAFNPHDN  856 (1103)
Q Consensus       801 ~~~~v~~l~~s~-d~~~l~~~~dg~------i~iwd~~~--~--~~~-----~~~~~~~~--------~i~~l~~s~~d~  856 (1103)
                      .-+..+.+.+.+ ++.+++...+|.      +..+++..  +  ..+     ..+....+        ..-++++.+ ++
T Consensus        18 ~~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~-~g   96 (326)
T PF13449_consen   18 PFGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPP-DG   96 (326)
T ss_pred             ccCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEec-CC
Confidence            456778899995 566666655565      55555432  1  111     11222221        344788866 78


Q ss_pred             CEEEEEeCC------CeEEEEEcCCceeEEEec---------------cCCCCEEEEEEccCCCEEEEEeC-----CC--
Q 001310          857 NVIAIGMDD------STILIYNARSSEVISKLE---------------GHSKRVTGLVFSDALNILVSSGG-----DA--  908 (1103)
Q Consensus       857 ~~lasg~~d------g~v~iwd~~~~~~~~~l~---------------~h~~~V~~l~~s~dg~~l~s~s~-----dg--  908 (1103)
                      .++++.-.+      ..|+.++.. |+....+.               ..+...-+|+++|||+.|.++.+     |+  
T Consensus        97 ~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~  175 (326)
T PF13449_consen   97 SFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPR  175 (326)
T ss_pred             CEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCcc
Confidence            888877666      788888866 65544331               13456889999999996666543     22  


Q ss_pred             e-------EEEEEcC--C-CceeeeeeeecCCC-cccCCCCceEEEEcCCCCEEEE
Q 001310          909 Q-------IFVWDVD--G-WGIQTCRSLQTPDG-VMTLAPSETHIQFHKDQTRFLL  953 (1103)
Q Consensus       909 ~-------I~iwd~~--~-~~~~~~~~~~~~~~-~~~~~~~v~~l~fs~dg~~l~~  953 (1103)
                      .       ++++..+  + ++.......+...- .......++.+.+-+++++|+.
T Consensus       176 ~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvL  231 (326)
T PF13449_consen  176 ANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVL  231 (326)
T ss_pred             cccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEE
Confidence            1       4555444  3 22222222222210 0001236899999999998887

>PRK14131 N-acetylneuraminic acid mutarotase; Provisional

Probab=88.36  E-value=48  Score=37.15  Aligned_cols=40  Identities=10%  Similarity=0.042  Sum_probs=19.2

Q ss_pred             EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1103)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d  643 (1103)
                      +.+||..+.+-...-..+..  .....+..-+++++++|+..
T Consensus       314 ~e~yd~~~~~W~~~~~lp~~--r~~~~av~~~~~iyv~GG~~  353 (376)
T PRK14131        314 DEIYALVNGKWQKVGELPQG--LAYGVSVSWNNGVLLIGGET  353 (376)
T ss_pred             hheEEecCCcccccCcCCCC--ccceEEEEeCCEEEEEcCCC
Confidence            45788877654322221111  11223344456677777653

>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=87.91  E-value=4.9  Score=48.75  Aligned_cols=147  Identities=11%  Similarity=0.035  Sum_probs=88.8

Q ss_pred             cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee-----EEeecC------CCceEEEEeeecCCccEEEEEECCCeE
Q 001310          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-----YSFEGH------GAPVYSLCPHAKENIHFIFSISVDGKI  511 (1103)
Q Consensus       443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~------~~~v~~~~~~~~~~~~~l~s~~~dg~i  511 (1103)
                      +|..+...+|+....++..+.+-.|..||+.+-..-     ..+..|      .....++.|.|... ...+....|+.|
T Consensus       102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp-~n~av~l~dlsl  180 (1405)
T KOG3630|consen  102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVP-LNSAVDLSDLSL  180 (1405)
T ss_pred             cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCcc-chhhhhccccch
Confidence            566677777877545666666668899998643211     111111      22234455555432 235566778888


Q ss_pred             EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc-cCCceEEEEEcCCC
Q 001310          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL-QHNSVSVVHFDTAK  590 (1103)
Q Consensus       512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~  590 (1103)
                      ++..+........--.-....++++|+|.|+.++.+-.    .+++.-|.. +++....+.+... ....|.+++|-...
T Consensus       181 ~V~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~n----nGt~vQy~P-~leik~~ip~Pp~~e~yrvl~v~Wl~t~  255 (1405)
T KOG3630|consen  181 RVKSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRN----NGTEVQYEP-SLEIKSEIPEPPVEENYRVLSVTWLSTQ  255 (1405)
T ss_pred             hhhhhhhhhhhhcccCcccceeeEEeccccceeeEecC----CCeEEEeec-ccceeecccCCCcCCCcceeEEEEecce
Confidence            88765543333332233457899999999999999865    445665653 3444444444332 23679999998777


Q ss_pred             CEEEE
Q 001310          591 DQILA  595 (1103)
Q Consensus       591 ~~l~~  595 (1103)
                      .++++
T Consensus       256 eflvv  260 (1405)
T KOG3630|consen  256 EFLVV  260 (1405)
T ss_pred             eEEEE
Confidence            77665

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=87.64  E-value=35  Score=34.82  Aligned_cols=234  Identities=11%  Similarity=0.041  Sum_probs=134.3

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  476 (1103)
                      ..-..++-+|||..-.++...+.|---|..+|+....   --+....-..+..-|||.  .-++-+.. -|.-.|.++.+
T Consensus        62 ~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~y---pLg~Ga~Phgiv~gpdg~--~Witd~~~-aI~R~dpkt~e  135 (353)
T COG4257          62 SAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETY---PLGSGASPHGIVVGPDGS--AWITDTGL-AIGRLDPKTLE  135 (353)
T ss_pred             CCccccccCCCCceEEecCccccceecCCCCCceEEE---ecCCCCCCceEEECCCCC--eeEecCcc-eeEEecCcccc
Confidence            3455688899998888888788787788888864331   123333445667778887  33433322 45555655554


Q ss_pred             eeE-Ee--ecCCCceEEEEeeecCCccEEEEEECC---------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEE
Q 001310          477 RTY-SF--EGHGAPVYSLCPHAKENIHFIFSISVD---------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       477 ~~~-~~--~~~~~~v~~~~~~~~~~~~~l~s~~~d---------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1103)
                      ... .+  +..........|  ++.|.+-+++...         +.|++|+..          .+..-..|+..|||..-
T Consensus       136 vt~f~lp~~~a~~nlet~vf--D~~G~lWFt~q~G~yGrLdPa~~~i~vfpaP----------qG~gpyGi~atpdGsvw  203 (353)
T COG4257         136 VTRFPLPLEHADANLETAVF--DPWGNLWFTGQIGAYGRLDPARNVISVFPAP----------QGGGPYGICATPDGSVW  203 (353)
T ss_pred             eEEeecccccCCCcccceee--CCCccEEEeeccccceecCcccCceeeeccC----------CCCCCcceEECCCCcEE
Confidence            321 22  112334455555  4456666665421         223344322          23356778999999987


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCC
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPE  624 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  624 (1103)
                      ++.-.    .+.|-..|..++.. ..+..........+.+.-+|.+..-++....+.+..+|..... -......+....
T Consensus       204 yasla----gnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~s-W~eypLPgs~ar  277 (353)
T COG4257         204 YASLA----GNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTS-WIEYPLPGSKAR  277 (353)
T ss_pred             EEecc----ccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCccccc-ceeeeCCCCCCC
Confidence            77543    33477777776632 2333222112345556667778777887778888888877654 444455544455


Q ss_pred             CceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          625 NPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       625 v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      -.++.....++.-.+-...|.|.-+|-.+.
T Consensus       278 pys~rVD~~grVW~sea~agai~rfdpeta  307 (353)
T COG4257         278 PYSMRVDRHGRVWLSEADAGAIGRFDPETA  307 (353)
T ss_pred             cceeeeccCCcEEeeccccCceeecCcccc
Confidence            566666666655554444555555555443

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=87.58  E-value=3.1  Score=42.14  Aligned_cols=77  Identities=9%  Similarity=0.102  Sum_probs=53.9

Q ss_pred             EccCCCEEEEEeCCCeEEEEEcCCCceeeee-e-eecCCCcc----cCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCc
Q 001310          894 FSDALNILVSSGGDAQIFVWDVDGWGIQTCR-S-LQTPDGVM----TLAPSETHIQFHKDQTRFLLVHETHLAIYEAEEL  967 (1103)
Q Consensus       894 ~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~-~-~~~~~~~~----~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~  967 (1103)
                      +..++++|+..+.+|.+++||+.+++..... . ........    .....|..+.++.+|.-|++-.+|..+.|+.+-+
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~   97 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG   97 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence            4457889999999999999999997754322 1 11111100    1224688999999999888878888999997755


Q ss_pred             eEE
Q 001310          968 TCL  970 (1103)
Q Consensus       968 ~~~  970 (1103)
                      .-+
T Consensus        98 ~W~  100 (219)
T PF07569_consen   98 CWI  100 (219)
T ss_pred             eeE
Confidence            443

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=87.27  E-value=49  Score=36.10  Aligned_cols=164  Identities=12%  Similarity=0.103  Sum_probs=91.2

Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCe------EEEEEcCC--c--eeE-----EEeccCCC--------CEEEEEEccCCC
Q 001310          843 SPTATSLAFNPHDNNVIAIGMDDST------ILIYNARS--S--EVI-----SKLEGHSK--------RVTGLVFSDALN  899 (1103)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~------v~iwd~~~--~--~~~-----~~l~~h~~--------~V~~l~~s~dg~  899 (1103)
                      -+.+..+++.++++ .+++.+.+|.      ++.+++..  +  ..+     ..+..-.+        ..-+|++.++|.
T Consensus        19 ~GGlSgl~~~~~~~-~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~   97 (326)
T PF13449_consen   19 FGGLSGLDYDPDDG-RFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS   97 (326)
T ss_pred             cCcEeeEEEeCCCC-EEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence            35678888886344 4455566666      55555543  1  111     11111111        344788888888


Q ss_pred             EEEEEeCC------CeEEEEEcCCCceeeeeeeecCC-------CcccCCCCceEEEEcCCCCEEEEE------eCC---
Q 001310          900 ILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPD-------GVMTLAPSETHIQFHKDQTRFLLV------HET---  957 (1103)
Q Consensus       900 ~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~fs~dg~~l~~~------~d~---  957 (1103)
                      ++++.-.+      ..|..++.+ |.......+...-       ..........+++++|||+.|.++      .|+   
T Consensus        98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~  176 (326)
T PF13449_consen   98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA  176 (326)
T ss_pred             EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence            88887667      778888877 5543322111110       112223578999999999955442      232   


Q ss_pred             --------eEEEEECCC-ceEEEEe---eCC-----CCcCeEEEEEccCCCEEEEEe-----cCCcEEEEeCC
Q 001310          958 --------HLAIYEAEE-LTCLKQW---FPI-----SSVPISQATFSCDCRMVFTSF-----VDGTLSIHEAS 1008 (1103)
Q Consensus       958 --------~v~iwd~~~-~~~~~~~---~~~-----h~~~v~~l~fs~dg~~l~t~~-----~dg~v~vWd~~ 1008 (1103)
                              .|..||..+ ++....+   ...     ....|+.+.+-+|+++|+.-=     ....++|+.+.
T Consensus       177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~  249 (326)
T PF13449_consen  177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD  249 (326)
T ss_pred             ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence                    244455554 3222221   111     357889999999999776321     23455555554

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=86.99  E-value=66  Score=37.29  Aligned_cols=157  Identities=13%  Similarity=0.150  Sum_probs=75.9

Q ss_pred             EEEEE---cCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCcc--
Q 001310          457 SVITC---GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLG--  531 (1103)
Q Consensus       457 ~l~s~---~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~--  531 (1103)
                      ++++.   ...+...+.| ..|.....+.........  +...++|.+++..+  +.+..+|+.. +...........  
T Consensus       117 ~~~~~~~~~~~~~~~~iD-~~G~Vrw~~~~~~~~~~~--~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l~~~~~~  190 (477)
T PF05935_consen  117 YFVNGNDWDSSSYTYLID-NNGDVRWYLPLDSGSDNS--FKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDLPGGYYD  190 (477)
T ss_dssp             EEEEETT--BEEEEEEEE-TTS-EEEEE-GGGT--SS--EEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE--TTEE-
T ss_pred             EEEeCCCCCCCceEEEEC-CCccEEEEEccCccccce--eeEcCCCCEEEecC--CceEEEcCCC-CEEEeeecCCcccc
Confidence            55555   3344566666 555555444322111111  33355776666554  7777777753 333333333321  


Q ss_pred             -EEEEEEccCCCEEEEEec---------CCCCceeEEEEeCCCCeeEEEEecccc------------------------c
Q 001310          532 -CTRMAYSANGRRLFSCGT---------SKEGESFLVEWNESEGAIKRTYQGLQL------------------------Q  577 (1103)
Q Consensus       532 -i~~~~~s~dg~~l~~~~~---------~~~~~~~i~iwd~~~~~~~~~~~~~~~------------------------~  577 (1103)
                       =..+...|+|++|+.+..         .....-.|..+| .+|+.+..+.....                        .
T Consensus       191 ~HHD~~~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D  269 (477)
T PF05935_consen  191 FHHDIDELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD  269 (477)
T ss_dssp             B-S-EEE-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred             cccccEECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence             234677899999988772         111122366677 77777766432110                        0


Q ss_pred             CCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEEcCCC
Q 001310          578 HNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       578 ~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~  620 (1103)
                      --.++++.+.+....|+..+. -..|...|..+++....+..+.
T Consensus       270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             ccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            124788999885555555554 4588899988998888886653

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=86.39  E-value=27  Score=38.69  Aligned_cols=150  Identities=9%  Similarity=0.096  Sum_probs=89.3

Q ss_pred             EEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecC------CccEEEEEECCCeEEEEEcCCCC
Q 001310          447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE------NIHFIFSISVDGKIKAWLYDSLG  520 (1103)
Q Consensus       447 ~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~~l~s~~~dg~i~iwd~~~~~  520 (1103)
                      +-...+...+++..|+....++--|++.|+.+..+..|...|  +.+.|..      +.+.|+..| +..|.-.|.+...
T Consensus       472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddvv--Vqy~p~~kf~qmt~eqtlvGlS-~~svFrIDPR~~g  548 (776)
T COG5167         472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDVV--VQYNPYFKFQQMTDEQTLVGLS-DYSVFRIDPRARG  548 (776)
T ss_pred             ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcce--eecCCchhHHhcCccceEEeec-ccceEEecccccC
Confidence            333444455566777778889999999999999998887664  3333321      223444444 4444444554433


Q ss_pred             eeEEecCCC-----ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE
Q 001310          521 ARVDYDAPG-----LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1103)
Q Consensus       521 ~~~~~~~~~-----~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  595 (1103)
                      .........     ....+..- ...-++++++..++    |++||.-..+....+.+..   ..|..+..+.+|.++++
T Consensus       549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~kGD----irLyDRig~rAKtalP~lG---~aIk~idvta~Gk~ila  620 (776)
T COG5167         549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASRKGD----IRLYDRIGKRAKTALPGLG---DAIKHIDVTANGKHILA  620 (776)
T ss_pred             Cceeeeeehhcccccccccccc-ccCceEEEecCCCc----eeeehhhcchhhhcCcccc---cceeeeEeecCCcEEEE
Confidence            222111111     12222222 23457888876444    9999965555445555555   78899999999999988


Q ss_pred             EeCCCcEEEEECC
Q 001310          596 AGDDHVIKIWDMN  608 (1103)
Q Consensus       596 ~~~dg~i~iwd~~  608 (1103)
                      .+. ..+.+-|+.
T Consensus       621 TCk-~yllL~d~~  632 (776)
T COG5167         621 TCK-NYLLLTDVP  632 (776)
T ss_pred             eec-ceEEEEecc
Confidence            775 455555543

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=86.23  E-value=3.7  Score=39.92  Aligned_cols=31  Identities=39%  Similarity=0.606  Sum_probs=25.7

Q ss_pred             ccEEEEEECCCC------CEEEEEeCCCeEEEEEecC
Q 001310          397 VSVNRVVWSPDG------SLLGVAYSKHIVQLYAYHG  427 (1103)
Q Consensus       397 ~~V~~~~~spdg------~~las~~~d~~i~iwd~~~  427 (1103)
                      ..|.+++|||-|      -+||+.+.++.|.||....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            389999999953      4788889999999998764

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=86.16  E-value=5  Score=40.61  Aligned_cols=74  Identities=9%  Similarity=-0.045  Sum_probs=55.6

Q ss_pred             EEEcCCCCEEEE-EeCCeEEEEECCCceEEEEe------eC-------CCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          942 IQFHKDQTRFLL-VHETHLAIYEAEELTCLKQW------FP-------ISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       942 l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~------~~-------~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                      +.+...+.+|++ ..+|.+++||+.+++.+...      +.       .....|..+.++.+|.-+++-+ +|..+.|+.
T Consensus        16 ~~l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~   94 (219)
T PF07569_consen   16 SFLECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSP   94 (219)
T ss_pred             EEEEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecc
Confidence            335566777766 79999999999998876542      21       2467889999999998888765 588999998


Q ss_pred             CCceeEEee
Q 001310         1008 SNLEVQCRI 1016 (1103)
Q Consensus      1008 ~~~~~~~~~ 1016 (1103)
                      +=+..+...
T Consensus        95 ~L~~W~~vs  103 (219)
T PF07569_consen   95 DLGCWIRVS  103 (219)
T ss_pred             ccceeEEec
Confidence            876665433

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=86.13  E-value=23  Score=40.11  Aligned_cols=112  Identities=11%  Similarity=0.058  Sum_probs=62.1

Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC------CEEEEE--e-
Q 001310          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ------TRFLLV--H-  955 (1103)
Q Consensus       885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg------~~l~~~--~-  955 (1103)
                      .-...+.|+|.|||++|++--..|.|++++..++.......+..... ....+....|+|+|+-      .+|.++  . 
T Consensus        28 GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~-~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~  106 (454)
T TIGR03606        28 GLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVN-DAQHNGLLGLALHPDFMQEKGNPYVYISYTYK  106 (454)
T ss_pred             CCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceec-cCCCCceeeEEECCCccccCCCcEEEEEEecc
Confidence            34557889999999888775556999999876544222111111100 0012468899999884      344442  1 


Q ss_pred             --------CCeEEEEECCCc-------eEEEEee---CCCCcCeEEEEEccCCCEEEEEecC
Q 001310          956 --------ETHLAIYEAEEL-------TCLKQWF---PISSVPISQATFSCDCRMVFTSFVD  999 (1103)
Q Consensus       956 --------d~~v~iwd~~~~-------~~~~~~~---~~h~~~v~~l~fs~dg~~l~t~~~d  999 (1103)
                              ...|.-|.+...       +.+..-.   ..|  .-..|.|.|||.++++.++.
T Consensus       107 ~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H--~GgrI~FgPDG~LYVs~GD~  166 (454)
T TIGR03606       107 NGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDH--NGGRLVFGPDGKIYYTIGEQ  166 (454)
T ss_pred             CCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCc--CCceEEECCCCcEEEEECCC
Confidence                    234555554321       1111111   113  23467899999877766544

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]

Probab=85.99  E-value=1.1e+02  Score=38.70  Aligned_cols=24  Identities=29%  Similarity=0.295  Sum_probs=17.9

Q ss_pred             ccccEEEEEEecCCcEEEEeecCc
Q 001310          733 KANKISRLTYNNGGQAIFALASNG  756 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~~dg  756 (1103)
                      +-..+.+++++|||..+++-..+-
T Consensus       660 ~lnsp~alaVsPdg~v~IAD~gN~  683 (1899)
T KOG4659|consen  660 KLNSPYALAVSPDGDVIIADSGNS  683 (1899)
T ss_pred             ccCCcceEEECCCCcEEEecCCch
Confidence            556788999999999776655443

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.93  E-value=11  Score=47.53  Aligned_cols=69  Identities=10%  Similarity=0.133  Sum_probs=44.3

Q ss_pred             CceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCcee
Q 001310          938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012 (1103)
Q Consensus       938 ~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~ 1012 (1103)
                      ++.+..+......+.....+.+-+|+.........+...+.      ..+.++..++++-.||.+.+||...+..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~v~~h~Dgs~~fWd~s~g~~  268 (993)
T KOG1983|consen  200 ESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPNGQ------LESRDGSHFVSYHTDGSYAFWDVSSGKL  268 (993)
T ss_pred             ccceeeeecCCCcceeeeeeeeeehhcccccchhhcccccc------cCccCCceEEEEEecCCEEeeecCCCce
Confidence            34444455555555555556666666554433333222221      1289999999999999999999999866

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=85.82  E-value=60  Score=35.69  Aligned_cols=188  Identities=13%  Similarity=0.141  Sum_probs=101.0

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee--ecCCccE--EEEEE-CC---CeEEEEEcCCCCeeE-EecC
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHF--IFSIS-VD---GKIKAWLYDSLGARV-DYDA  527 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~--l~s~~-~d---g~i~iwd~~~~~~~~-~~~~  527 (1103)
                      +++....++-+.+||+ .|+.++.+.  .+.++.+.+.  ..-++..  |+.++ .+   .+|++|.++...... .+..
T Consensus        70 lIigTdK~~GL~VYdL-~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~  146 (381)
T PF02333_consen   70 LIIGTDKKGGLYVYDL-DGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTD  146 (381)
T ss_dssp             EEEEEETTTEEEEEET-TS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CB
T ss_pred             eEEEEeCCCCEEEEcC-CCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCC
Confidence            6777777888999995 566666664  2344444321  1112222  34443 22   579999887533222 2221


Q ss_pred             -------CCccEEEEEEc--c-CCCEEEEEecCCCCceeEEEEeC---CCC----eeEEEEecccccCCceEEEEEcCCC
Q 001310          528 -------PGLGCTRMAYS--A-NGRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK  590 (1103)
Q Consensus       528 -------~~~~i~~~~~s--~-dg~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1103)
                             ....+..+|+-  + +|.+.+.... +  ++.+..|.+   ..+    +.++.|...    ..+..|......
T Consensus       147 ~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~-k--~G~~~Qy~L~~~~~g~v~~~lVR~f~~~----sQ~EGCVVDDe~  219 (381)
T PF02333_consen  147 PAAPIATDLSEPYGLCLYRSPSTGALYAFVNG-K--DGRVEQYELTDDGDGKVSATLVREFKVG----SQPEGCVVDDET  219 (381)
T ss_dssp             TTC-EE-SSSSEEEEEEEE-TTT--EEEEEEE-T--TSEEEEEEEEE-TTSSEEEEEEEEEE-S----S-EEEEEEETTT
T ss_pred             CCcccccccccceeeEEeecCCCCcEEEEEec-C--CceEEEEEEEeCCCCcEeeEEEEEecCC----CcceEEEEeccc
Confidence                   11246677763  3 4555444432 1  334554443   344    457777653    478889999888


Q ss_pred             CEEEEEeCCCcEEEEECCC-----CeeEEEEcCCCCCCCCceEEEec--CCC-EEEEEE-CCCeEEEEEcCCC
Q 001310          591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFNK--NGT-LLAVIA-NENRIKILETPES  654 (1103)
Q Consensus       591 ~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~g~-~l~~~~-~dg~i~iw~~~~~  654 (1103)
                      .+|+.+-++.-|.-|+.+.     ++.+.......-...+-.+++-.  +++ +|++.+ .+++..+|+....
T Consensus       220 g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~  292 (381)
T PF02333_consen  220 GRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP  292 (381)
T ss_dssp             TEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred             CCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999999998888888762     22333333322234566677643  332 444444 4778999998754

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=85.39  E-value=63  Score=35.54  Aligned_cols=191  Identities=15%  Similarity=0.195  Sum_probs=106.0

Q ss_pred             cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE----ecCCCE--E
Q 001310          744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL----SKNDAY--L  817 (1103)
Q Consensus       744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~----s~d~~~--l  817 (1103)
                      |....++.+...+-+.+||+.....                       ....      ...+..+.+    .-+|+.  |
T Consensus        66 p~kSlIigTdK~~GL~VYdL~Gk~l-----------------------q~~~------~Gr~NNVDvrygf~l~g~~vDl  116 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDGKEL-----------------------QSLP------VGRPNNVDVRYGFPLNGKTVDL  116 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS-EE-----------------------EEE-------SS-EEEEEEEEEEEETTEEEEE
T ss_pred             cccceEEEEeCCCCEEEEcCCCcEE-----------------------Eeec------CCCcceeeeecceecCCceEEE
Confidence            4566788888888999999765432                       1110      111222211    123443  4


Q ss_pred             EEEc---C--CeEEEEEcC--CceeeEEecC-------CCCCeeEEEE--cCCCCC-EEEEEeCCCeEEEEEcC---Cc-
Q 001310          818 FSAS---G--GVISLYIVM--TFKTILTIMP-------PSPTATSLAF--NPHDNN-VIAIGMDDSTILIYNAR---SS-  876 (1103)
Q Consensus       818 ~~~~---d--g~i~iwd~~--~~~~~~~~~~-------~~~~i~~l~~--s~~d~~-~lasg~~dg~v~iwd~~---~~-  876 (1103)
                      ++++   +  .+|++|.+.  ++. +..+..       ....+..+|+  ++.++. ++++...+|.+..|.+.   .+ 
T Consensus       117 avas~R~~g~n~l~~f~id~~~g~-L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~  195 (381)
T PF02333_consen  117 AVASDRSDGRNSLRLFRIDPDTGE-LTDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGK  195 (381)
T ss_dssp             EEEEE-CCCT-EEEEEEEETTTTE-EEE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSS
T ss_pred             EEEecCcCCCCeEEEEEecCCCCc-ceEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCc
Confidence            4554   2  469999775  343 333321       1134556665  443444 66667888988888775   23 


Q ss_pred             ---eeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEc--CCC-CE
Q 001310          877 ---EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH--KDQ-TR  950 (1103)
Q Consensus       877 ---~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs--~dg-~~  950 (1103)
                         +.+++|.. ...+..|+......+|..+-++.-|.-|+.+.........+....+. .....|..+++-  ++| .|
T Consensus       196 v~~~lVR~f~~-~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~-~l~aDvEGlaly~~~~g~gY  273 (381)
T PF02333_consen  196 VSATLVREFKV-GSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGD-GLVADVEGLALYYGSDGKGY  273 (381)
T ss_dssp             EEEEEEEEEE--SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSS-SB-S-EEEEEEEE-CCC-EE
T ss_pred             EeeEEEEEecC-CCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeeccccc-ccccCccceEEEecCCCCeE
Confidence               45677764 34788899988888999999887777777764332222333222221 112367777774  344 46


Q ss_pred             EEEE--eCCeEEEEECCC
Q 001310          951 FLLV--HETHLAIYEAEE  966 (1103)
Q Consensus       951 l~~~--~d~~v~iwd~~~  966 (1103)
                      |+++  .+++..||+...
T Consensus       274 LivSsQG~~sf~Vy~r~~  291 (381)
T PF02333_consen  274 LIVSSQGDNSFAVYDREG  291 (381)
T ss_dssp             EEEEEGGGTEEEEEESST
T ss_pred             EEEEcCCCCeEEEEecCC
Confidence            6665  678899999874

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=85.37  E-value=17  Score=37.15  Aligned_cols=148  Identities=11%  Similarity=0.058  Sum_probs=83.5

Q ss_pred             EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC---CeeEEEEecccccCCceEEEEEcC
Q 001310          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE---GAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      .+||+.+.+.+.........+.+-++-+||+.+.+++. .++...+++++..+   ..........-.....=-....-+
T Consensus        49 ~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~-~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   49 VEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGD-NDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCC-CccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            46888876654433333445556678899999988875 34667788888654   111111111000112333344568


Q ss_pred             CCCEEEEEeCCC-cEEEEECCC-Ce-eEE--EEcC---CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEec
Q 001310          589 AKDQILAAGDDH-VIKIWDMNK-VQ-LLT--TIDA---GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA  660 (1103)
Q Consensus       589 ~~~~l~~~~~dg-~i~iwd~~~-~~-~~~--~~~~---~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1103)
                      ||+.++.|+... +..+|.... .. ...  .+..   .....--..+...|+|++++.+..+.  .|||..+.+.+..+
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~~~l  205 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVVRTL  205 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEEeeC
Confidence            999999987664 445555422 11 111  1110   11112234677889999999888754  56688877665555


Q ss_pred             cc
Q 001310          661 GV  662 (1103)
Q Consensus       661 ~~  662 (1103)
                      ..
T Consensus       206 P~  207 (243)
T PF07250_consen  206 PD  207 (243)
T ss_pred             CC
Confidence            43

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins

Probab=84.68  E-value=77  Score=36.77  Aligned_cols=147  Identities=14%  Similarity=0.124  Sum_probs=75.7

Q ss_pred             CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310          864 DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       864 ~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1103)
                      ..+...++|.. |..+..+.........+.+-++|.+++..+  ..++..|+.. +......+  ..+...   ---.+.
T Consensus       126 ~~~~~~~iD~~-G~Vrw~~~~~~~~~~~~~~l~nG~ll~~~~--~~~~e~D~~G-~v~~~~~l--~~~~~~---~HHD~~  196 (477)
T PF05935_consen  126 SSSYTYLIDNN-GDVRWYLPLDSGSDNSFKQLPNGNLLIGSG--NRLYEIDLLG-KVIWEYDL--PGGYYD---FHHDID  196 (477)
T ss_dssp             BEEEEEEEETT-S-EEEEE-GGGT--SSEEE-TTS-EEEEEB--TEEEEE-TT---EEEEEE----TTEE----B-S-EE
T ss_pred             CCceEEEECCC-ccEEEEEccCccccceeeEcCCCCEEEecC--CceEEEcCCC-CEEEeeec--CCcccc---cccccE
Confidence            44566666644 555555443222111166678998887655  7788888875 33332222  221100   012577


Q ss_pred             EcCCCCEEEEEe--------------CCeEEEEECCCceEEEEeeCC-C-------------------------CcCeEE
Q 001310          944 FHKDQTRFLLVH--------------ETHLAIYEAEELTCLKQWFPI-S-------------------------SVPISQ  983 (1103)
Q Consensus       944 fs~dg~~l~~~~--------------d~~v~iwd~~~~~~~~~~~~~-h-------------------------~~~v~~  983 (1103)
                      +-|+|++|+.+.              +..|..+| .+|+.+..|... |                         -.-+.+
T Consensus       197 ~l~nGn~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~DW~H~Ns  275 (477)
T PF05935_consen  197 ELPNGNLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRDWLHINS  275 (477)
T ss_dssp             E-TTS-EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSBS--EEE
T ss_pred             ECCCCCEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCCccccCc
Confidence            889999998754              34577788 888887765211 1                         134678


Q ss_pred             EEEcc-CCCEEEEEecCCcEEEEeCCCceeEEeecccc
Q 001310          984 ATFSC-DCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1103)
Q Consensus       984 l~fs~-dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~ 1020 (1103)
                      +.+.+ |+..|+++=.-..|...|..++++...+....
T Consensus       276 i~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~~  313 (477)
T PF05935_consen  276 IDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPPG  313 (477)
T ss_dssp             EEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-ST
T ss_pred             cEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCCC
Confidence            89888 55555554444588889989999887777544

Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A.

>PRK13614 lipoprotein LpqB; Provisional

Probab=84.67  E-value=91  Score=36.72  Aligned_cols=157  Identities=13%  Similarity=0.056  Sum_probs=86.0

Q ss_pred             CeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC--eEEEEEcC-Ccee--
Q 001310          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNAR-SSEV--  878 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~-~~~~--  878 (1103)
                      .+.+++.+++++.+|...+..-.+|-...+...+.+. ....++.-.|.+ ++ .+-+...+.  .|..+.-. +++.  
T Consensus       344 ~~~s~avS~~g~~~A~~~~~~~~l~~~~~g~~~~~~~-~g~~Lt~PS~d~-~g-~vWtv~~g~~~~vv~~~~~g~~~~~~  420 (573)
T PRK13614        344 GPASPAESPVSQTVAFLNGSRTTLYTVSPGQPARALT-SGSTLTRPSFSP-QD-WVWTAGPGGNGRIVAYRPTGVAEGAQ  420 (573)
T ss_pred             cccceeecCCCceEEEecCCCcEEEEecCCCcceeee-cCCCccCCcccC-CC-CEEEeeCCCCceEEEEecCCCccccc
Confidence            6778899999999988874333444333333333222 133466777877 55 444444333  44444322 1111  


Q ss_pred             ----EEEeccCCC-CEEEEEEccCCCEEEEE-eCCCe--EEEEEcC---CCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310          879 ----ISKLEGHSK-RVTGLVFSDALNILVSS-GGDAQ--IFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       879 ----~~~l~~h~~-~V~~l~~s~dg~~l~s~-s~dg~--I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  947 (1103)
                          ........+ .|..+..|+||-.++.. ..+|.  |.|=-+.   .|...   .+..+... .....+.+++|..+
T Consensus       421 ~~~~~v~~~~l~g~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~G~P~---~L~~~~~~-~~~~~~~sl~W~~~  496 (573)
T PRK13614        421 APTVTLTADWLAGRTVKELRVSREGVRALVISEQNGKSRVQVAGIVRNEDGTPR---ELTAPITL-AADSDADTGAWVGD  496 (573)
T ss_pred             ccceeecccccCCCeeEEEEECCCccEEEEEEEeCCccEEEEEEEEeCCCCCeE---EccCceec-ccCCCcceeEEcCC
Confidence                111223344 49999999999877654 34554  6654433   33311   11111110 00136899999999


Q ss_pred             CCEEEEE----eCCeEEEEECCCc
Q 001310          948 QTRFLLV----HETHLAIYEAEEL  967 (1103)
Q Consensus       948 g~~l~~~----~d~~v~iwd~~~~  967 (1103)
                      +.+++.+    .+..+++..+..|
T Consensus       497 ~sl~V~~~~~~~~~~~~~v~v~~g  520 (573)
T PRK13614        497 STVVVTKASATSNVVPELLSVDAG  520 (573)
T ss_pred             CEEEEEeccCCCcceEEEEEeCCC
Confidence            9988874    2245677777544

>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]

Probab=84.36  E-value=0.16  Score=54.84  Aligned_cols=143  Identities=18%  Similarity=0.197  Sum_probs=95.7

Q ss_pred             EEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEE
Q 001310          739 RLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLF  818 (1103)
Q Consensus       739 ~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~  818 (1103)
                      ...|-+.+..++.++.+..+..||-..                       +.....     ........+++..++..++
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~ag-----------------------q~~le~-----n~tg~aldm~wDkegdvla   90 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKAG-----------------------QVILEL-----NPTGKALDMAWDKEGDVLA   90 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhhc-----------------------ceeccc-----CCchhHhhhhhccccchhh
Confidence            455667777788888887777776221                       111111     1334455677777777776


Q ss_pred             EEc--CCeEEEEEcCCceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEc
Q 001310          819 SAS--GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS  895 (1103)
Q Consensus       819 ~~~--dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s  895 (1103)
                      ...  .+.+.+||+.+.... ++. +....-.-+.|++ +...++.|...|.+.||+..+.+.+...-.|...++++++.
T Consensus        91 vlAek~~piylwd~n~eytq-qLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~  168 (615)
T KOG2247|consen   91 VLAEKTGPIYLWDVNSEYTQ-QLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVT  168 (615)
T ss_pred             hhhhcCCCeeechhhhhhHH-HHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEec
Confidence            665  588999999854322 222 1111112278999 89999999999999999988877666665599999999999


Q ss_pred             cCCCEEEEEeCCCeEEE
Q 001310          896 DALNILVSSGGDAQIFV  912 (1103)
Q Consensus       896 ~dg~~l~s~s~dg~I~i  912 (1103)
                      +.+ +.+.++.|..+.+
T Consensus       169 lEd-~vil~dcd~~L~v  184 (615)
T KOG2247|consen  169 LED-YVILCDCDNTLSV  184 (615)
T ss_pred             ccc-eeeecCcHHHHHH
Confidence            876 5555666655443

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=84.26  E-value=81  Score=35.85  Aligned_cols=66  Identities=14%  Similarity=0.197  Sum_probs=41.2

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      +...-+..+.|+|.|||+ +|++--..|.|++++..++.......+            .........+....|+|+||-
T Consensus        25 va~GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        25 LLSGLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EECCCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence            344445889999999997 666654469999998665542211011            100011136778899999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>PRK13613 lipoprotein LpqB; Provisional

Probab=84.11  E-value=1e+02  Score=36.76  Aligned_cols=189  Identities=10%  Similarity=0.032  Sum_probs=101.8

Q ss_pred             CeeEEEEecCCCEEEEEcC-C-eEEEEEcCCcee----eEEecCCCCCeeEEEEcCCCCCEEEEEeC--CC--eEEEEEc
Q 001310          804 AVPCFALSKNDAYLFSASG-G-VISLYIVMTFKT----ILTIMPPSPTATSLAFNPHDNNVIAIGMD--DS--TILIYNA  873 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~d-g-~i~iwd~~~~~~----~~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg--~v~iwd~  873 (1103)
                      .+.+++.++++..+|...+ + .+.+..+..+..    ..... .....+.-.|.+ ++ .+-+...  ++  .+++..-
T Consensus       364 ~~~s~avS~~g~~~A~v~~~~~~l~vg~~~~~~~~~~~~~~~~-~~~~Lt~PS~d~-~g-~vWtvd~~~~~~~vl~v~~~  440 (599)
T PRK13613        364 PLRRVAVSRDESRAAGISADGDSVYVGSLTPGASIGVHSWGVT-ADGRLTSPSWDG-RG-DLWVVDRDPADPRLLWLLQG  440 (599)
T ss_pred             CccceEEcCCCceEEEEcCCCcEEEEeccCCCCccccccceee-ccCcccCCcCcC-CC-CEEEecCCCCCceEEEEEcC
Confidence            6778999999999888763 3 466655433322    11111 133466677777 45 3333322  22  2555543


Q ss_pred             CCceeEEEec--cCCC-CEEEEEEccCCCEEEEEeC---CCeEEEEEcC---CCceeeeeeeecCCCcccCCCCceEEEE
Q 001310          874 RSSEVISKLE--GHSK-RVTGLVFSDALNILVSSGG---DAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQF  944 (1103)
Q Consensus       874 ~~~~~~~~l~--~h~~-~V~~l~~s~dg~~l~s~s~---dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~l~f  944 (1103)
                       +|+... +.  ...+ .|..+..|+||-.+|....   .+.|.|=-+.   .|............+.    ..+.+++|
T Consensus       441 -~G~~~~-V~~~~l~g~~I~~lrvSrDG~RvAvv~~~~g~~~v~va~V~R~~~G~~~l~~~~~l~~~l----~~v~~~~W  514 (599)
T PRK13613        441 -DGEPVE-VRTPELDGHRVVAVRVARDGVRVALIVEKDGRRSLQIGRIVRDAKAVVSVEEFRSLAPEL----EDVTDMSW  514 (599)
T ss_pred             -CCcEEE-eeccccCCCEeEEEEECCCccEEEEEEecCCCcEEEEEEEEeCCCCcEEeeccEEeccCC----CccceeEE
Confidence             444321 21  2333 7999999999988776543   3555554443   2331111122222221    24889999


Q ss_pred             cCCCCEEEEE--e--CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEecCCcE
Q 001310          945 HKDQTRFLLV--H--ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSFVDGTL 1002 (1103)
Q Consensus       945 s~dg~~l~~~--~--d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~~dg~v 1002 (1103)
                      ..++.+++.+  .  +..++...++....... ..+.-..+..++-..+.+ .|+.+..++.|
T Consensus       515 ~~~~sL~Vlg~~~~~~~~v~~v~vdG~~~~~~-~~~~v~~~~~ia~~~~~~~~~v~~~~~~~v  576 (599)
T PRK13613        515 AGDSQLVVLGREEGGVQQARYVQVDGSTPPAS-APAAVTGVESITASEDERLPLVAGTSEDGI  576 (599)
T ss_pred             cCCCEEEEEeccCCCCcceEEEecCCcCcccc-cccCCCCeeEEEecCCCCceEEEEecCCCe
Confidence            9999988864  2  23455555553322211 122344566677776666 44542455554

>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.10  E-value=24  Score=44.68  Aligned_cols=33  Identities=30%  Similarity=0.577  Sum_probs=27.5

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCC
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ  368 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~  368 (1103)
                      .....++|+|..+ ++|.|+..|.|.++-...-+
T Consensus        36 ~~~~~~afD~~q~-llai~t~tg~i~~yg~~~ve   68 (993)
T KOG1983|consen   36 STPSALAFDPTQG-LLAIGTRTGAIKIYGQPGVE   68 (993)
T ss_pred             CCCcceeeccccc-eEEEEEecccEEEecccceE
Confidence            4677899999998 89999999999999865433

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=83.58  E-value=4.4  Score=47.81  Aligned_cols=133  Identities=12%  Similarity=0.095  Sum_probs=77.9

Q ss_pred             CceEEEecCC-CceEEEEEcCCCcEEEEECCCCCe-eeee--eee-EeeccccccceeeeeccCCCccEEEEEEC--CCC
Q 001310          336 SPMSMDFHPV-QHTLLLVGTNVGDTGLWDVNSGQK-LFIR--NFK-VWDIGACSMLFKTALVRDPGVSVNRVVWS--PDG  408 (1103)
Q Consensus       336 ~V~~v~~spd-g~~llasgs~d~~v~iwd~~~~~~-~~~~--~~~-~~~~~~~~~~~~~~~~~~h~~~V~~~~~s--pdg  408 (1103)
                      .|+.|...-= ++.+|+.+..||.|.+|.+++=.. +...  ..+ .... ....++   ....-...++.++++  ...
T Consensus       102 tIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r-~~i~P~---f~~~v~~SaWGLdIh~~~~~  177 (717)
T PF08728_consen  102 TINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSR-LKIKPF---FHLRVGASAWGLDIHDYKKS  177 (717)
T ss_pred             eeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhcccccccccc-ccCCCC---eEeecCCceeEEEEEecCcc
Confidence            3555544331 224788899999999998732100 0000  000 0000 000111   111234589999999  889


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCC--c--eEEEEEcCCCceEEEeC
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCK--Q--ISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~--~--~~l~s~~~d~~i~iwd~  472 (1103)
                      ++||+++....|.||-......-.....-..|...|.+|+|.++..  .  ..+++++-.|.+.+|++
T Consensus       178 rlIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  178 RLIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             eEEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            9999999988888887765311111101113667899999987651  1  36888999999998886

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.53  E-value=29  Score=38.51  Aligned_cols=142  Identities=15%  Similarity=0.206  Sum_probs=87.9

Q ss_pred             cCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCC-------CCCEEEEEeCCCeEEEEEcC-CceeEEE
Q 001310          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH-------DNNVIAIGMDDSTILIYNAR-SSEVISK  881 (1103)
Q Consensus       812 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~-------d~~~lasg~~dg~v~iwd~~-~~~~~~~  881 (1103)
                      .|..+|...+  ...+.-.|++.|+.+.+...+...  -+.|.|.       +.+.|+ |-.+..|.-.|.+ .|..+..
T Consensus       477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~gNKi~v  553 (776)
T COG5167         477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARGNKIKV  553 (776)
T ss_pred             CCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccCCceee
Confidence            3445555444  366888899999999988876655  4666662       233444 4445555555544 2322222


Q ss_pred             eccCCCCEEEEEEcc----CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC
Q 001310          882 LEGHSKRVTGLVFSD----ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  957 (1103)
Q Consensus       882 l~~h~~~V~~l~~s~----dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~  957 (1103)
                      .. ....++.-.||.    ...++|.+|.-|-|++||--.-...+  .++.+      +..|..+..+.+|+++++....
T Consensus       554 ~e-sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKt--alP~l------G~aIk~idvta~Gk~ilaTCk~  624 (776)
T COG5167         554 VE-SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKT--ALPGL------GDAIKHIDVTANGKHILATCKN  624 (776)
T ss_pred             ee-ehhccccccccccccccCceEEEecCCCceeeehhhcchhhh--cCccc------ccceeeeEeecCCcEEEEeecc
Confidence            21 112222223332    34699999999999999976522111  12222      2368899999999999998888


Q ss_pred             eEEEEECC
Q 001310          958 HLAIYEAE  965 (1103)
Q Consensus       958 ~v~iwd~~  965 (1103)
                      .+.+-|+.
T Consensus       625 yllL~d~~  632 (776)
T COG5167         625 YLLLTDVP  632 (776)
T ss_pred             eEEEEecc
Confidence            89888875

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=83.04  E-value=7.2  Score=37.88  Aligned_cols=31  Identities=13%  Similarity=0.235  Sum_probs=26.5

Q ss_pred             CCEEEEEEccCC------CEEEEEeCCCeEEEEEcCC
Q 001310          887 KRVTGLVFSDAL------NILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       887 ~~V~~l~~s~dg------~~l~s~s~dg~I~iwd~~~  917 (1103)
                      ..|.+++|||-|      -+||+.+.++.|.||.-..
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            479999999955      5789999999999998775

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PRK13615 lipoprotein LpqB; Provisional

Probab=82.77  E-value=1.1e+02  Score=36.04  Aligned_cols=151  Identities=9%  Similarity=0.012  Sum_probs=88.7

Q ss_pred             eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC-Cceeeee
Q 001310          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCR  924 (1103)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~-~~~~~~~  924 (1103)
                      ..+++.++ ++..+|....++.++++... +.....+.+  ...+.-.|.++| ++-+.......++..... |+... .
T Consensus       336 ~~s~avS~-dg~~~A~v~~~~~l~vg~~~-~~~~~~~~~--~~Lt~PS~d~~g-~vWtv~~g~~~~l~~~~~~G~~~~-v  409 (557)
T PRK13615        336 ADAATLSA-DGRQAAVRNASGVWSVGDGD-RDAVLLDTR--PGLVAPSLDAQG-YVWSTPASDPRGLVAWGPDGVGHP-V  409 (557)
T ss_pred             cccceEcC-CCceEEEEcCCceEEEecCC-CcceeeccC--CccccCcCcCCC-CEEEEeCCCceEEEEecCCCceEE-e
Confidence            37889999 88888888778888887665 222222332  235666788877 555554444455554433 33211 1


Q ss_pred             eeecCCCcccCCCCceEEEEcCCCCEEEEEe----CCeEEEEECC--Cc--eEE----EEeeCCCCcCeEEEEEccCCCE
Q 001310          925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH----ETHLAIYEAE--EL--TCL----KQWFPISSVPISQATFSCDCRM  992 (1103)
Q Consensus       925 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~----d~~v~iwd~~--~~--~~~----~~~~~~h~~~v~~l~fs~dg~~  992 (1103)
                      .....     ..+.|..+..|+||..+|+-.    .++|++--+.  .+  ..+    ..+..+ ...+.++.|..++..
T Consensus       410 ~v~~~-----~~~~I~~lrvSrDG~R~Avi~~~~g~~~V~va~V~R~~~~P~~L~~~p~~l~~~-l~~v~sl~W~~~~~l  483 (557)
T PRK13615        410 AVSWT-----ATGRVVSLEVARDGARVLVQLETGAGPQLLVASIVRDGGVPTSLTTTPLELLAS-PGTPLDATWVDELDV  483 (557)
T ss_pred             ecccc-----CCCeeEEEEeCCCccEEEEEEecCCCCEEEEEEEEeCCCcceEeeeccEEcccC-cCcceeeEEcCCCEE
Confidence            11111     124799999999999998732    3566664332  23  122    111122 348899999999987


Q ss_pred             EEEEe---cCCcEEEEeCC
Q 001310          993 VFTSF---VDGTLSIHEAS 1008 (1103)
Q Consensus       993 l~t~~---~dg~v~vWd~~ 1008 (1103)
                      ++.+.   .+..+++-.+.
T Consensus       484 aVl~~~~~~~~~v~~v~v~  502 (557)
T PRK13615        484 ATLTLAPDGERQVELHQVG  502 (557)
T ss_pred             EEEeccCCCCceEEEEECC
Confidence            66552   23455555555

>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal

Probab=81.86  E-value=40  Score=30.55  Aligned_cols=120  Identities=11%  Similarity=0.059  Sum_probs=0.0

Q ss_pred             EEEEEEccCCCEEEEEeCCCeEEEEEcCCC------ceeeeeeeecCCCcccCCCCceEEEEcC-----CCCEEEEEeCC
Q 001310          889 VTGLVFSDALNILVSSGGDAQIFVWDVDGW------GIQTCRSLQTPDGVMTLAPSETHIQFHK-----DQTRFLLVHET  957 (1103)
Q Consensus       889 V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~------~~~~~~~~~~~~~~~~~~~~v~~l~fs~-----dg~~l~~~~d~  957 (1103)
                      |..-.|......|+.++.-|.|.|.+....      .......+...+       .|++++-.+     +...|++|...
T Consensus         1 VaiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~-------~italaaG~l~~~~~~D~LliGt~t   73 (136)
T PF14781_consen    1 VAIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQ-------EITALAAGRLKPDDGRDCLLIGTQT   73 (136)
T ss_pred             CeEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCC-------ceEEEEEEecCCCCCcCEEEEeccc


Q ss_pred             eEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCE---EEEEecCCcEEEEeCCCceeEEeec
Q 001310          958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM---VFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       958 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~---l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      .+..||+.....+.  ...-...|.++.+-.-+..   |+..+.+..|.-||.+..+...+..
T Consensus        74 ~llaYDV~~N~d~F--yke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVt  134 (136)
T PF14781_consen   74 SLLAYDVENNSDLF--YKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVT  134 (136)
T ss_pred             eEEEEEcccCchhh--hhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEec

>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2

Probab=81.65  E-value=81  Score=33.95  Aligned_cols=238  Identities=15%  Similarity=0.017  Sum_probs=115.4

Q ss_pred             CCCceEEEEEcCCCcEEEEECCC--CCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC-CCeE
Q 001310          344 PVQHTLLLVGTNVGDTGLWDVNS--GQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KHIV  420 (1103)
Q Consensus       344 pdg~~llasgs~d~~v~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-d~~i  420 (1103)
                      -+++ .|+.|+.+|...+ ++..  ++..+                     -.+...|+++...+.-+.|++-++ ...+
T Consensus        11 ~~~~-~lL~GTe~Gly~~-~~~~~~~~~~k---------------------l~~~~~v~q~~v~~~~~lLi~Lsgk~~~L   67 (302)
T smart00036       11 CDGK-WLLVGTEEGLYVL-NISDQPGTLEK---------------------LIGRRSVTQIWVLEENNVLLMISGKKPQL   67 (302)
T ss_pred             cCCc-EEEEEeCCceEEE-EcccCCCCeEE---------------------ecCcCceEEEEEEhhhCEEEEEeCCcceE
Confidence            3444 5888888775444 4543  22221                     125678999999998877776643 3459


Q ss_pred             EEEEecCCCc-----------ccc-ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc----eeEEe---
Q 001310          421 QLYAYHGGSD-----------ARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSF---  481 (1103)
Q Consensus       421 ~iwd~~~~~~-----------~~~-~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~---  481 (1103)
                      +++++..-..           .+. ....-+|......++.. .++...++++....+|.++.+....    ....+   
T Consensus        68 ~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~-~~~~~~~l~~A~~~~i~l~~~~~~~~~f~~~k~~~~~  146 (302)
T smart00036       68 YSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVV-NGKRSLFLCVALQSSVVLLQWYNPLKKFKLFKSKFLF  146 (302)
T ss_pred             EEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEE-cCCCcEEEEEEcCCeEEEEEccChhhhhhhhcccccc
Confidence            9999843221           000 00122444444444444 3333344555556677776443221    11110   


Q ss_pred             e-cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC--CC--e---eEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          482 E-GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS--LG--A---RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       482 ~-~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~--~~--~---~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      . ....++..+..........++.|+..+-..++++..  ..  .   ............++..-+++.+|++-      
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~sl~~~~~~~~~~p~~i~~l~~~e~Llc~------  220 (302)
T smart00036      147 PLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDLSLPFLSEETSLKPISVVQVPRDEFLLCY------  220 (302)
T ss_pred             cCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccccccccccccccCceEEEEECCCeEEEEE------
Confidence            0 112233333333333345666776643333444432  10  0   00011111023333334455555554      


Q ss_pred             ceeEEEEeCCCCeeEE--EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310          554 ESFLVEWNESEGAIKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                      +......|....+..+  .+.- .   ....++++.  ..++++-+. ..|.|+++.+++.++++..
T Consensus       221 ~~~~v~Vn~~G~~~~r~~~l~w-~---~~p~~~~~~--~pyll~~~~-~~ievr~l~~~~l~q~i~~  280 (302)
T smart00036      221 DEFGVFVNLYGKRRSRNPILHW-E---FMPESFAYH--SPYLLAFHD-NGIEIRSIKTGELLQELAD  280 (302)
T ss_pred             CcEEEEEeCCCCccccceEEEc-C---CcccEEEEE--CCEEEEEcC-CcEEEEECCCCceEEEEec
Confidence            2224444443212211  1211 1   344566665  367776654 5599999999999888864

Unpublished observations.

>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others

Probab=81.14  E-value=1.9e+02  Score=37.94  Aligned_cols=131  Identities=15%  Similarity=0.168  Sum_probs=75.5

Q ss_pred             EcCCeEEEEEcCCcee-------eEEe---------cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcC----CceeE
Q 001310          820 ASGGVISLYIVMTFKT-------ILTI---------MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNAR----SSEVI  879 (1103)
Q Consensus       820 ~~dg~i~iwd~~~~~~-------~~~~---------~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~----~~~~~  879 (1103)
                      -.+|.|.-||-.+..-       +..+         .-..+.|..+.+++ ...-++-|.. ..+-+=-..    -|..+
T Consensus       620 L~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~-~~~~~~~g~~-~~~a~~~~r~~~e~G~~l  697 (1774)
T PF11725_consen  620 LQDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQ-EHPSIAHGDN-NVFALPQRRNKVELGDAL  697 (1774)
T ss_pred             eccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeeccc-CCCccccCCC-cccccccccCCCCCCccc
Confidence            3479999999764211       1111         11345667777776 4334443332 112111111    12333


Q ss_pred             EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeE
Q 001310          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHL  959 (1103)
Q Consensus       880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v  959 (1103)
                      .-+.  ...|+++|.-.+ +.+++.+..|.+.... ..+.     .+.....  ...+.|..++.....++.|...+|.+
T Consensus       698 ~Gl~--~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-----p~~l~~~--gl~G~ik~l~lD~~~nL~Alt~~G~L  766 (1774)
T PF11725_consen  698 EGLE--DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-----PVPLSRP--GLSGEIKDLALDEKQNLYALTSTGEL  766 (1774)
T ss_pred             cCCC--cCcceeEEEEcC-CceEEeccCCcccccc-CCCC-----CccCCCC--CCCcchhheeeccccceeEecCCCce
Confidence            3333  456888888754 6667788899999888 6555     2222211  12358999999999999998888887


Q ss_pred             EEEE
Q 001310          960 AIYE  963 (1103)
Q Consensus       960 ~iwd  963 (1103)
                      +--+
T Consensus       767 f~~~  770 (1774)
T PF11725_consen  767 FRLP  770 (1774)
T ss_pred             eecC
Confidence            7543

It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].

>COG5290 IkappaB kinase complex, IKAP component [Transcription]

Probab=81.03  E-value=98  Score=36.68  Aligned_cols=478  Identities=10%  Similarity=0.060  Sum_probs=0.0

Q ss_pred             EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEE------EEEcCCCCEEEEEe
Q 001310          524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSV------VHFDTAKDQILAAG  597 (1103)
Q Consensus       524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~------~~~~~~~~~l~~~~  597 (1103)
                      .++...+.+..++|..-+..+...+.-+..+.-|.+.......-...+....   .+...      ..|+--....+.-.
T Consensus        11 ~fpt~sg~~~~l~fdsv~D~iyi~c~l~s~d~Giev~~~s~~~d~s~l~~F~---ip~f~dkl~s~~hf~~~~~~~f~~~   87 (1243)
T COG5290          11 TFPTASGDEDELGFDSVGDWIYITCVLGSTDKGIEVAKESSIYDESGLKRFE---IPFFPDKLLSFKHFHVLTFEYFLID   87 (1243)
T ss_pred             cCCCCCCChHHhcccccCceEEEEeecCCCCCCeeeeeeccccchhheeEec---cCCcchHhhhhhhhhhhheeeEEec


Q ss_pred             CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCc
Q 001310          598 DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST  677 (1103)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~  677 (1103)
                      ....|.+-.-.+.....-.....-...|...+||.|.+.+++...+..|.+++..-.      .........-+....+.
T Consensus        88 ~gDii~~~~dp~p~e~~~eivG~v~nGIvaa~wS~DE~~~cvvt~~r~il~~~k~fd------~ise~~L~~~dl~ef~k  161 (1243)
T COG5290          88 EGDIIHLVNDPTPAELEMEIVGKVSNGIVAASWSADEKTWCVVTSTREILLFDKYFD------PISEYHLKKSDLVEFGK  161 (1243)
T ss_pred             CCcEEEEEcCCCcccchhhhhccccCceEEEeeccCCceEEEEEcCceEEEEecccc------ccchhhcchhHHHHhcc


Q ss_pred             eeeeeccCCceEecCCC------------CCCCccceeeccccccccccccccCCccceeeeccCccccccEEE------
Q 001310          678 VTGAGIANGSVSVNEDP------------KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR------  739 (1103)
Q Consensus       678 ~~~~~~~~~~~~~~~~~------------s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~------  739 (1103)
                      .+.+|++...-.|.+..            --|-.-+........+..|.-+..-..-.+.-..|.  ..-.|.+      
T Consensus       162 hi~VgWgkketqfrgk~~raqlrdptmp~~vD~G~l~avd~~k~~i~wrgD~~y~~v~r~Ee~pr--ra~rvysreg~ld  239 (1243)
T COG5290         162 HIRVGWGKKETQFRGKGARAQLRDPTMPYMVDYGDLFAVDTNKKIIFWRGDTEYNLVGRSEERPR--RAFRVYSREGQLD  239 (1243)
T ss_pred             ceEeeecccchhccccchhhhccCCCCcccccccceeEeeCCceEEEEccCcceeeecchhcccc--cceeeeccccccc


Q ss_pred             ------------EEEecCCcEEEEeecCce-----EEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCC
Q 001310          740 ------------LTYNNGGQAIFALASNGV-----HLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  802 (1103)
Q Consensus       740 ------------~~~s~~g~~l~~~~~dg~-----i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (1103)
                                  +.|-|+|..+++.+.||.     +..+.                       ..|..--.+++.. +..
T Consensus       240 s~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfE-----------------------rNGLrHGef~lr~-~~d  295 (1243)
T COG5290         240 SASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFE-----------------------RNGLRHGEFDLRV-GCD  295 (1243)
T ss_pred             cccCCcccchhccccccCCceeeeeccCCCCCcceEEEEc-----------------------cCCcccCCccccC-Cch


Q ss_pred             CCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe
Q 001310          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL  882 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l  882 (1103)
                      ..+...+|.-....++.+..+.+++|-.....-.....-.-..+.-+.|+|.....|...+...-.++.=-.....-...
T Consensus       296 Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~f~d~~~I~~V~f~~k~~~~~s~  375 (1243)
T COG5290         296 EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLLFRDGERILRVFFSEKKTHHGSE  375 (1243)
T ss_pred             hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEEEecCCeEEEEEeehhhhcCCcc


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEE
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIY  962 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iw  962 (1103)
                      .....          |...+.   ||.-.++-.-+-...........-+...   -|..++.|-..+..++..+..+..+
T Consensus       376 ~p~d~----------g~~~Vi---DGs~~l~Tplsl~n~PPPm~~~~~~~d~---NV~dv~~s~~~~~~aa~~~drli~f  439 (1243)
T COG5290         376 YPFDN----------GTSYVI---DGSYMLYTPLSLKNLPPPMFSVRVGFDT---NVVDVFPSFAEKKGAALLRDRLIMF  439 (1243)
T ss_pred             cCccC----------CceEEE---cCceEEecchhhhcCCCCeEEEEecCCC---ceeeeccchhhhhHhhhccceeEEE


Q ss_pred             ECCCceEEEEeeCCC------CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEee
Q 001310          963 EAEELTCLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCY 1036 (1103)
Q Consensus       963 d~~~~~~~~~~~~~h------~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1036 (1103)
                      ..++-+.+.....-.      .-...++.+-.+|..++....++.-+++=++.+..-.+..                   
T Consensus       440 ~~~s~e~i~k~~ef~~sef~s~v~f~~~l~l~~~~v~ll~dtnn~s~~~i~~~~d~~e~~k-------------------  500 (1243)
T COG5290         440 RWDSEEFINKRTEFLESEFDSIVLFDGFLVLKSGHVFLLKDTNNESDTYITRNGDVDERKK-------------------  500 (1243)
T ss_pred             ecCcHHHHHHhccccHHhhhhhccccceEEecCceEEEEeccCCCcceEEeecCcccchhh-------------------


Q ss_pred             ccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1037 CSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1037 ~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      -....++..++-.+.-+.+++..+..+|.|+-+++
T Consensus       501 ~~~ve~~~~~~l~~~~c~~~l~y~t~~G~v~~yn~  535 (1243)
T COG5290         501 RGTVETRRTSTLVHQLCQTLLRYGTCVGVVKHYNF  535 (1243)
T ss_pred             ccceeeeeeehhhHHHHHHHHhhcccceeEEEecc

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	1103
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		1e-12
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		2e-04
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		8e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		9e-08
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		9e-10
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		2e-07
2gnq_A	336	Structure Of Wdr5 Length = 336		1e-09
2gnq_A	336	Structure Of Wdr5 Length = 336		9e-08
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		1e-09
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		8e-08
2g99_A	308	Structural Basis For The Specific Recognition Of Me		1e-09
2g99_A	308	Structural Basis For The Specific Recognition Of Me		2e-07
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		2e-09
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		1e-07
2h9l_A	329	Wdr5delta23 Length = 329		2e-09
2h9l_A	329	Wdr5delta23 Length = 329		1e-07
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		2e-09
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		1e-07
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		2e-09
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		8e-08
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		2e-09
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		4e-07
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		2e-09
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		9e-08
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		2e-09
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		1e-07
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		2e-09
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-07
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		2e-09
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-07
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		3e-09
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		4e-07
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		3e-09
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		4e-07
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		5e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		2e-06
2aq5_A	402	Crystal Structure Of Murine Coronin-1 Length = 402		3e-07
2b4e_A	402	Crystal Structure Of Murine Coronin-1: Monoclinic F		4e-07
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		2e-06
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		2e-06
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		7e-06
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		7e-06
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-05
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		2e-04
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		9e-05
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		1e-04
1nex_B	464	Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp		1e-04
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		7e-04
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		7e-04
3fm0_A	345	Crystal Structure Of Wd40 Protein Ciao1 Length = 34		8e-04

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 72.8 bits (177), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 131/554 (23%), Positives = 231/554 (41%), Gaps = 95/554 (17%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLE-IDAHVGNVNDLAFSAPCKQI 456
           SV  V +SPDG  +  A     V+L+  +G     Q L+ +  H  +V  +AFS P  Q 
Sbjct: 59  SVWGVAFSPDGQTIASASDDKTVKLWNRNG-----QLLQTLTGHSSSVRGVAFS-PDGQ- 111
Query: 457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC--PHAKENIHFIFSISVDGKIKAW 514
           ++ +  DDKT+K+W+   G    +  GH + V+ +   P  +     I S S D  +K W
Sbjct: 112 TIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQT----IASASDDKTVKLW 166
Query: 515 LYDS--LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ 572
             +   L     + +   G   +A+S +G+ + S    K     +  WN   G + +T  
Sbjct: 167 NRNGQLLQTLTGHSSSVWG---VAFSPDGQTIASASDDKT----VKLWNR-NGQLLQTLT 218
Query: 573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------LPEN 625
           G     +SV  V F      I +A DD  +K+W+ N  QLL T+             P+ 
Sbjct: 219 G---HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVNGVAFRPDG 274
Query: 626 PRIC----------FNKNGTLLAVIANENR--IKILETPESNSVDAAGVLSDN----LRK 669
             I           +N+NG LL  +   +     +  +P+  ++ +A   SD+    L  
Sbjct: 275 QTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASA---SDDKTVKLWN 331
Query: 670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLP 729
            +   + T+TG   +   V+ + D +      I+  +++K+     L+ R  +   LL  
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQT-----IASASDDKTV---KLWNRNGQ---LLQT 380
Query: 730 SKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP 789
               ++ +  + ++  GQ I + + +    +W                        R+G 
Sbjct: 381 LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWN-----------------------RNG- 416
Query: 790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL 849
           Q +   T  S+S   V   A S +D  + SAS            + + T+   S +   +
Sbjct: 417 QLLQTLTGHSSS---VWGVAFSPDDQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 473
Query: 850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQ 909
           AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS     + S+  D  
Sbjct: 474 AFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKT 531
Query: 910 IFVWDVDGWGIQTC 923
           + +W+ +G  +QT 
Sbjct: 532 VKLWNRNGQLLQTL 545

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 45.4 bits (106), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 836 ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFS 895
           + T+   S +   +AF+P D   IA   DD T+ ++N R+ +++  L GHS  V G+ FS
Sbjct: 50  LQTLTGHSSSVWGVAFSP-DGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFS 107
Query: 896 DALNILVSSGGDAQIFVWDVDGWGIQTC 923
                + S+  D  + +W+ +G  +QT 
Sbjct: 108 PDGQTIASASDDKTVKLWNRNGQLLQTL 135

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 63.2 bits (152), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 47  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 102
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 103 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 159
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 160 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 213
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 214 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 251

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 20   SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 74
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 75   YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 133
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950
               F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 134  CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 184
Query: 951  FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 185  -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 243
Query: 1008 S 1008
            S
Sbjct: 244  S 244

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 62.8 bits (151), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 55.5 bits (132), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 780  PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 838
            P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 12   PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 66
Query: 839  IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 898
            I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 67   ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 125
Query: 899  NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958
            N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 126  NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 175
Query: 959  ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
                 I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 176  DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 62.8 bits (151), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 49  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 104
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 105 -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 161
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 162 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 215
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 216 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 253

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/241 (23%), Positives = 111/241 (46%), Gaps = 20/241 (8%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 22   SSSATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 76
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 77   YDGKFEKTISGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 135
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR 950
               F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D + 
Sbjct: 136  CCNFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS- 186
Query: 951  FLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007
             L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + 
Sbjct: 187  -LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDY 245
Query: 1008 S 1008
            S
Sbjct: 246  S 246

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 62.4 bits (150), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 21  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 76
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 77  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 133
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 134 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 187
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 188 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 225

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 55.1 bits (131), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 55/233 (23%), Positives = 107/233 (45%), Gaps = 20/233 (8%)
Query: 780  PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILT 838
            P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   T
Sbjct: 2    PTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT 56
Query: 839  IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDAL 898
            I       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   
Sbjct: 57   ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQS 115
Query: 899  NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH 958
            N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++
Sbjct: 116  NLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSY 165
Query: 959  ---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
                 I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 218

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2    TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 42  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 97
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 98  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 154
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 155 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 208
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 209 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 246

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 19   TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 73
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 74   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 132
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 133  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 182
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 183  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 239

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 25  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 80
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 81  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 137
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 191
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 192 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 229

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 55.8 bits (133), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 109/237 (45%), Gaps = 20/237 (8%)
Query: 776  TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFK 834
            T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++     K
Sbjct: 2    TQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGK 56
Query: 835  TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
               TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F
Sbjct: 57   FEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNF 115
Query: 895  SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV 954
            +   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V
Sbjct: 116  NPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIV 165
Query: 955  HETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
              ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 166  SSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 222

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 26  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 81
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 82  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 138
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 139 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 192
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 193 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 230

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 56.6 bits (135), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
             +T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 1    GSTQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 55
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 56   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 114
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 115  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 164
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 165  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 223

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 634 -GTLLAVIANENRIKI--LETPE 653
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 54.3 bits (129), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 108/242 (44%), Gaps = 22/242 (9%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIV 830
            + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1    SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949
               F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115  CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 950  RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006
              L+V  ++     I++     CLK      + P+S   FS + + +  + +D TL + +
Sbjct: 166  --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD 223
Query: 1007 AS 1008
             S
Sbjct: 224  YS 225

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 30  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 85
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 86  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 142
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 143 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 196
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 197 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 234

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 5    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 59
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 60   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 118
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 119  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 168
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 169  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 227

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 62.0 bits (149), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 31  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 86
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 87  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 143
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 144 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 197
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 198 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 235

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 56.2 bits (134), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 110/239 (46%), Gaps = 20/239 (8%)
Query: 774  ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMT 832
            + T+  P   +P +  +F +   T     +AV     S N  +L S+S   +I ++    
Sbjct: 6    SATQSKPTPVKPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYD 60
Query: 833  FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V   
Sbjct: 61   GKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCC 119
Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
             F+   N++VS   D  + +WDV     +T + L+T   +   +   + + F++D +  L
Sbjct: 120  NFNPQSNLIVSGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--L 169
Query: 953  LVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
            +V  ++     I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 170  IVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 228

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLAASSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 53.1 bits (126), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 53/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L ++S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 61.6 bits (148), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/218 (24%), Positives = 103/218 (47%), Gaps = 13/218 (5%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 24  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 79
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 80  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 136
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 137 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 190
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           +  VS V F      ILAA  D+ +K+WD +K + L T
Sbjct: 191 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKT 228

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 9    KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 63
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 64   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 122
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 123  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 172
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 173  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 221

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 61.2 bits (147), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 56/236 (23%), Positives = 108/236 (45%), Gaps = 17/236 (7%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTG----HKNEKYCIFAN 246

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/229 (23%), Positives = 106/229 (46%), Gaps = 20/229 (8%)
Query: 784  QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPP 842
            +P +  +F +   T     +AV     S N  +L S+S   +I ++     K   TI   
Sbjct: 13   KPNYALKFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGH 67
Query: 843  SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV 902
                + +A++  D+N++    DD T+ I++  S + +  L+GHS  V    F+   N++V
Sbjct: 68   KLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIV 126
Query: 903  SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETH---L 959
            S   D  + +WDV     +T + L+T   +   +   + + F++D +  L+V  ++    
Sbjct: 127  SGSFDESVRIWDV-----KTGKCLKT---LPAHSDPVSAVHFNRDGS--LIVSSSYDGLC 176
Query: 960  AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008
             I++     CLK      + P+S   FS + + +  + +D TL + + S
Sbjct: 177  RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYS 225

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 62/263 (23%), Positives = 119/263 (45%), Gaps = 24/263 (9%)
Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +V+ V +SP+G  L  + +  +++++   G  D + +  I  H   ++D+A+S+    + 
Sbjct: 28  AVSSVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSNLL- 83
Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            ++  DDKT+K+WD  +G    + +GH    Y  C +     + I S S D  ++ W   
Sbjct: 84  -VSASDDKTLKIWDVSSGKCLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIWDVK 140
Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +        A     + + ++ +G  + S  +S +G   +  W+ + G   +T   +   
Sbjct: 141 TGMCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDGLCRI--WDTASGQCLKTL--IDDD 194
Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN---- 633
           +  VS V F      ILAA  D+ +K+WD +K + L T        +N + C   N    
Sbjct: 195 NPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTG----HKNEKYCIFANFSVT 250
Query: 634 -GTLLAVIANENRIKI--LETPE 653
            G  +   + +N + I  L+T E
Sbjct: 251 GGKWIVSGSEDNMVYIWNLQTKE 273

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 55/242 (22%), Positives = 107/242 (44%), Gaps = 22/242 (9%)
Query: 772  TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGG-VISLYIV 830
            + + T+  P   +P +   F +   T     +AV     S N  +L S+S   +I ++  
Sbjct: 1    SSSATQSKPTPVKPNYALMFTLAGHT-----KAVSSVKFSPNGEWLASSSADKLIKIWGA 55
Query: 831  MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT 890
               K   TI       + +A++  D+N++    DD T+ I++  S + +  L+GHS  V 
Sbjct: 56   YDGKFEKTISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVF 114
Query: 891  GLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT 949
               F+   N++VS   D  + +WDV  G  ++T  +   P          + + F++D +
Sbjct: 115  CCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDP---------VSAVHFNRDGS 165
Query: 950  RFLLVHETH---LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006
              L+V  ++     I++     CLK      + P+S   FS + + +  + +D  L + +
Sbjct: 166  --LIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWD 223
Query: 1007 AS 1008
             S
Sbjct: 224  YS 225

>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402

Iteration: 1
 Score = 54.7 bits (130), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 807 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 859
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALIXEASGG--GAFLVLPLGKTGRVDKNVPLVXGHTAPVLDIAWXPHNDNVI 97
Query: 860 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 910
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGXDNVI 156
Query: 911 FVWDV 915
            VWDV
Sbjct: 157 LVWDV 161

>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 40/125 (32%), Positives = 62/125 (49%), Gaps = 19/125 (15%)
Query: 807 CFALSKNDAYLFSASGGVISLYIVMTF-------KTILTIMPPSPTATSLAFNPHDNNVI 859
           C    K  A +  ASGG    ++V+         K +  +   +     +A+ PH++NVI
Sbjct: 40  CAVNPKFMALICEASGG--GAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDNVI 97
Query: 860 AIGMDDSTILIYNARSS-------EVISKLEGHSKRVTGLV--FSDALNILVSSGGDAQI 910
           A G +D T++++            E +  LEGH+KRV G+V     A N+L+S+G D  I
Sbjct: 98  ASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRV-GIVAWHPTAQNVLLSAGCDNVI 156
Query: 911 FVWDV 915
            VWDV
Sbjct: 157 LVWDV 161

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 122/624 (19%), Positives = 231/624 (37%), Gaps = 111/624 (17%)
Query: 391  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 450
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 610  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 666
Query: 451  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 509
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 667  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 723
Query: 510  KIKAWLYDSLGAR---------VDY-----------DAPGLGCTRM--AYSANGR----- 542
             +K W  +    R         V++                G  R+    SAN R     
Sbjct: 724  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 783
Query: 543  -RLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 578
             R F                C  S +G+  +V            + G +   + G    H
Sbjct: 784  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 840
Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 841  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 898
Query: 639  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 691
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 899  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 957
Query: 692  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 745
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 958  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1014
Query: 746  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1015 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1047
Query: 806  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1048 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1106
Query: 866  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 923
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1107 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1165
Query: 924  RSLQTPDGVMTLAPSETHIQFHKD 947
              +   +G  T     T + F  D
Sbjct: 1166 APISVEEGTATHGGWVTDVCFSPD 1189

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 51.6 bits (122), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 123/624 (19%), Positives = 229/624 (36%), Gaps = 111/624 (17%)
Query: 391  LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS 450
            +VR    +V    +S DG  +    +   +Q++    G    + L+I AH   V   AFS
Sbjct: 617  VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG---EKLLDIKAHEDEVLCCAFS 673
Query: 451  APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDG 509
            +    I+  TC  DK +K+WD+ TG   ++++ H   V + C    ++ H + +  S D 
Sbjct: 674  SDDSYIA--TCSADKKVKIWDSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLATGSNDF 730
Query: 510  KIKAWLY------------------------DSLGARVDYDAP-GLGCTRMA---YSANG 541
             +K W                          D L A    D    L   R A    S N 
Sbjct: 731  FLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINV 790
Query: 542  RRLF---------------SCGTSKEGESFLVEWN--------ESEGAIKRTYQGLQLQH 578
            +R F                C  S +G+  +V            + G +   + G    H
Sbjct: 791  KRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTG---HH 847
Query: 579  NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
            +++    F       + A   + +++W+++    L   D  G L     + F+ +G+   
Sbjct: 848  STIQYCDFSPYDHLAVIALSQYCVELWNID--SRLKVADCRGHLSWVHGVMFSPDGSSFL 905
Query: 639  VIANENRIKILETPESNSVDAAGVLSDNL------RKLSVNPISTVTGAG-IANGSVSVN 691
              +++  I++ ET +    ++A VL   +       +  V  +  + G   IA  +  ++
Sbjct: 906  TASDDQTIRVWETKKVCK-NSAIVLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTGQID 964
Query: 692  EDPKEDV-----KPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISR-LTYNNG 745
              P+  V      P +   A    +    +   P+   + +  S V   K  R + +   
Sbjct: 965  YLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPN---NRVFSSGVGHKKAVRHIQFTAD 1021
Query: 746  GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV 805
            G+ + + + + V  +W W   D              ++   H              QE V
Sbjct: 1022 GKTLISSSEDSVIQVWNWQTGDY-------------VFLQAH--------------QETV 1054
Query: 806  PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD 865
              F L ++   L  +  G + ++ V+T +          T  S A +  D    +    D
Sbjct: 1055 KDFRLLQDSRLLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISS-DATKFSSTSAD 1113
Query: 866  STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-AQIFVWDV-DGWGIQTC 923
             T  I++      + +L+GH+  V    FS    IL+++G D  +I +W+V DG  + +C
Sbjct: 1114 KTAKIWSFDLLSPLHELKGHNGCVRCSAFS-LDGILLATGDDNGEIRIWNVSDGQLLHSC 1172
Query: 924  RSLQTPDGVMTLAPSETHIQFHKD 947
              +   +G  T     T + F  D
Sbjct: 1173 APISVEEGTATHGGWVTDVCFSPD 1196

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 520
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 107 DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 162
Query: 521 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 163 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 218
Query: 579 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 219 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 270
Query: 637 LAVIANENRIKILE 650
           L   A    IKI +
Sbjct: 271 LCA-ATGPSIKIWD 283

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 50.1 bits (118), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 55/194 (28%), Positives = 89/194 (45%), Gaps = 24/194 (12%)
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--- 520
           D T+++WD  TG+ T  F GH   V S+   + +N   I S S D  IK W  ++LG   
Sbjct: 84  DGTLRLWDLTTGTTTRRFVGHTKDVLSV-AFSSDNRQ-IVSGSRDKTIKLW--NTLGVCK 139
Query: 521 --ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
              + +  +  + C R + +++   + SCG  K     +  WN +   +K  + G     
Sbjct: 140 YTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDK----LVKVWNLANCKLKTNHIGHTGYL 195
Query: 579 NSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL 636
           N+V+V     + D  L A  G D    +WD+N+ + L T+D G  +     +CF+ N   
Sbjct: 196 NTVTV-----SPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGGDIINA---LCFSPNRYW 247
Query: 637 LAVIANENRIKILE 650
           L   A    IKI +
Sbjct: 248 LCA-ATGPSIKIWD 260

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 72/315 (22%), Positives = 125/315 (39%), Gaps = 49/315 (15%)
Query: 322 FPKTVAQTLIEGSSSPMS-MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDI 380
            P+   +  + G  SP++ + FHPV  ++++  +      +WD  +G   F R  K    
Sbjct: 95  IPRPPEKYALSGHRSPVTRVIFHPV-FSVMVSASEDATIKVWDYETGD--FERTLK---- 147
Query: 381 GACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH 440
           G                SV  + +   G LL    +   ++L+ + G    R    +  H
Sbjct: 148 GHTD-------------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRT---MHGH 191
Query: 441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH 500
             NV+ ++       I  ++   DKTIK+W+  TG    +F GH   V  + P+  ++  
Sbjct: 192 DHNVSSVSIMPNGDHI--VSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN--QDGT 247
Query: 501 FIFSISVDGKIKAWLYDSLGARVDYDAPG--LGCTRMA----YSANGRRLFSCGTSKEGE 554
            I S S D  ++ W+  +   + +       + C   A    YS+      S  T K G+
Sbjct: 248 LIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGS-ETKKSGK 306
Query: 555 --SFLVE---------WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK 603
              FL+          W+ S G    T  G     N V  V F +    IL+  DD  ++
Sbjct: 307 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVG---HDNWVRGVLFHSGGKFILSCADDKTLR 363
Query: 604 IWDMNKVQLLTTIDA 618
           +WD    + + T++A
Sbjct: 364 VWDYKNKRCMKTLNA 378

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 48.9 bits (115), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 74/312 (23%), Positives = 125/312 (40%), Gaps = 58/312 (18%)
Query: 354 TNVGDTG-LWDVNSGQKLFI-----RNFKVW--DIGAC--SMLFKTALVRDPGVSVNRVV 403
           T VG TG +W       + I     R  KVW  + G C  ++   T+ VR   +   RVV
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVV 213
Query: 404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
                + L V   +    L+   G            HV  V  + +        V++   
Sbjct: 214 SGSRDATLRVWDIETGQCLHVLMG------------HVAAVRCVQYDGR----RVVSGAY 257
Query: 464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV 523
           D  +KVWD  T +  ++ +GH   VYSL     + IH + S S+D  I+ W         
Sbjct: 258 DFMVKVWDPETETCLHTLQGHTNRVYSL---QFDGIHVV-SGSLDTSIRVW--------- 304
Query: 524 DYDAPGLGCTRMAYSANGRRLFSCG--------TSKEGESFLVEWNESEGAIKRTYQGLQ 575
             D     C    ++  G +  + G         S   +S +  W+   G   +T QG  
Sbjct: 305 --DVETGNCI---HTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPN 359
Query: 576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICFNK 632
              ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI    
Sbjct: 360 KHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRI-RAS 416
Query: 633 NGTLLAVIANEN 644
           N  L+  + + N
Sbjct: 417 NTKLVCAVGSRN 428

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 45.1 bits (105), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 54/124 (43%), Gaps = 16/124 (12%)
Query: 833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMD---------DSTILIYNARSSEVISKLE 883
           +  ++ +  P           H N V ++  D         D++I +++  +   I  L 
Sbjct: 257 YDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Query: 884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943
           GH    +G+   D  NILVS   D+ + +WD     I+T + LQT  G      + T +Q
Sbjct: 317 GHQSLTSGMELKD--NILVSGNADSTVKIWD-----IKTGQCLQTLQGPNKHQSAVTCLQ 369
Query: 944 FHKD 947
           F+K+
Sbjct: 370 FNKN 373

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 83/205 (40%), Gaps = 23/205 (11%)
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 495 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 540
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMAS 272
Query: 541 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 598 DDHVIKIWDMNKVQLLTTIDAGGGL 622
            D  I+IWD+   +L+ T+     L
Sbjct: 330 MDTTIRIWDLENGELMYTLQGHTAL 354

>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464

Iteration: 1
 Score = 46.2 bits (108), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/205 (22%), Positives = 82/205 (40%), Gaps = 23/205 (11%)
Query: 435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH 494
           L++  H G V  L ++     +S  T   D+T++VWD   G  T+ FEGH + V  L   
Sbjct: 156 LQLSGHDGGVWALKYAHGGILVSGST---DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIV 212
Query: 495 AKENIHFIFSISVDGKIKAWLYDS------LGARVDY--------DAPGLGCTRMAYSAN 540
             +NI +I + S D  +  W           G   DY        + P        + A+
Sbjct: 213 EYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXAS 272
Query: 541 GRRLFSCG---TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG 597
            R +   G    S   ++ L+ W+ ++        G     + +    +D  + + ++A 
Sbjct: 273 VRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSG---HTDRIYSTIYDHERKRCISAS 329
Query: 598 DDHVIKIWDMNKVQLLTTIDAGGGL 622
            D  I+IWD+   +L  T+     L
Sbjct: 330 XDTTIRIWDLENGELXYTLQGHTAL 354

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 45.8 bits (107), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 3/91 (3%)
Query: 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
           S+ F+P D   +A G +D  I I++  + +++  L+GH + +  L +  + + LVS  GD
Sbjct: 128 SVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 908 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 938
             + +WD+     Q   +L   DGV T+A S
Sbjct: 187 RTVRIWDLRTG--QCSLTLSIEDGVTTVAVS 215

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 43.5 bits (101), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 61/218 (27%), Positives = 90/218 (41%), Gaps = 29/218 (13%)
Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISV 458
           V  VV S DG           ++L+    G   R+ +    H  +V  +AFS   +QI  
Sbjct: 433 VEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV---GHTKDVLSVAFSLDNRQI-- 487
Query: 459 ITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCPHAKENI--HFIFSISVDGKIKAW- 514
           ++   D+TIK+W+ +   + T S  G G   +  C     N     I S S D  +K W 
Sbjct: 488 VSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547
Query: 515 -----LYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR 569
                L  +L     Y       + +A S +G    S G  K+G   L  W+ +EG  K+
Sbjct: 548 LSNCKLRSTLAGHTGY------VSTVAVSPDGSLCASGG--KDGVVLL--WDLAEG--KK 595
Query: 570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
            Y    L+ NSV      +     L A  +H IKIWD+
Sbjct: 596 LYS---LEANSVIHALCFSPNRYWLCAATEHGIKIWDL 630

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score = 43.1 bits (100), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 6/149 (4%)
Query: 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG-GVIS 826
           L ++  ++     RL+   +G Q     + D+   +A    A S +  YL + +  G ++
Sbjct: 92  LPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAW-TLAFSPDSQYLATGTHVGKVN 147
Query: 827 LYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHS 886
           ++ V + K   ++        S+A++P D   +A G  D  I I++  + +++  LEGH+
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSP-DGKYLASGAIDGIINIFDIATGKLLHTLEGHA 206
Query: 887 KRVTGLVFSDALNILVSSGGDAQIFVWDV 915
             +  L FS    +LV++  D  I ++DV
Sbjct: 207 MPIRSLTFSPDSQLLVTASDDGYIKIYDV 235

>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1 Length = 345

Iteration: 1
 Score = 43.1 bits (100), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 32/118 (27%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 807 CFALSKNDA-YLFSASGGVISLYIVMT------FKTILTIMPPSPTATSLAFNPHDNNVI 859
           C+ L+ N A  L ++ GG   + I  T       K++L+      T   +A++P  N + 
Sbjct: 19  CWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLA 77
Query: 860 AIGMDDST-ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916
           +   D +T I   N    E ++ LEGH   V  + ++ + N+L +   D  ++VW+VD
Sbjct: 78  SASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVD 135

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	1103
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	100.0
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	100.0
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	100.0
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
3ow8_A	321	WD repeat-containing protein 61; structural genomi	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	100.0
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	100.0
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	100.0
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	100.0
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	100.0
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	100.0
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	100.0
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	100.0
1k32_A	1045	Tricorn protease; protein degradation, substrate g	100.0
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	100.0
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	100.0
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	100.0
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	100.0
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	100.0
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	100.0
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	100.0
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	100.0
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	100.0
2pm7_B	297	Protein transport protein SEC13, protein transport	100.0
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	100.0
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	100.0
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	100.0
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	100.0
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	100.0
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	100.0
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	100.0
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	100.0
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	100.0
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	100.0
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	100.0
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	100.0
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	100.0
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.98
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.98
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.98
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.98
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.97
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.97
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.97
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.97
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.97
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.97
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.97
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.97
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.97
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.96
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.96
3jro_A	753	Fusion protein of protein transport protein SEC13	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.96
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.96
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.95
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.94
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.94
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.93
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.92
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.91
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.9
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.89
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.89
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.89
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.88
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.88
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.88
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.88
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.87
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.87
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.86
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.85
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.85
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.84
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.84
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.84
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.83
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.83
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.83
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.82
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.82
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.81
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.8
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.79
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.79
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.77
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.77
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.77
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.72
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.7
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.69
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.68
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.68
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.67
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.66
4a2l_A	795	BT_4663, two-component system sensor histidine kin	99.66
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.66
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.65
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.63
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.61
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.6
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.59
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.59
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.59
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.59
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.58
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.57
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.57
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.56
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.56
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.56
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.55
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.54
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.53
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.53
3v9f_A	781	Two-component system sensor histidine kinase/RESP	99.53
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.52
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.5
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.49
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.49
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.48
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.48
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.43
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.43
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.38
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.38
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.37
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.35
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	99.34
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.33
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.31
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.3
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.29
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.28
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.28
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.27
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.27
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.25
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.25
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	99.24
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.23
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.23
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.22
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.2
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.19
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.19
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	99.17
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	99.17
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.14
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	99.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.12
2ece_A	462	462AA long hypothetical selenium-binding protein;	99.11
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.05
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	99.02
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	99.02
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.97
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.92
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	98.92
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.92
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.87
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.86
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.85
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.84
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.82
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.8
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.8
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	98.79
3ei3_A	1158	DNA damage-binding protein 1; UV-damage, DDB, nucl	98.78
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.77
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.74
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.71
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.69
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.67
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.63
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.62
3ott_A	758	Two-component system sensor histidine kinase; beta	98.59
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.57
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.54
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.53
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.49
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.46
3ott_A	758	Two-component system sensor histidine kinase; beta	98.45
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.44
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.43
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.4
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.4
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.4
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.38
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.38
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.37
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	98.35
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.34
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.33
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.32
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.31
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.28
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.26
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.25
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.23
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.2
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.15
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	98.11
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.06
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	98.03
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.01
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.96
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.94
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.93
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	97.86
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.8
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.78
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.77
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.72
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.69
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.69
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.69
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.62
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.49
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	97.41
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.33
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.28
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	97.25
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.23
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.22
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.18
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.17
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	97.16
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	97.14
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	97.11
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.1
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	97.05
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.94
2xtc_A	90	F-box-like/WD repeat-containing protein TBL1X; tra	96.83
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	96.79
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.78
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	96.72
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	96.68
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.67
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.67
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.63
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	96.45
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	96.44
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	96.42
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	96.21
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.16
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.09
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	96.05
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	95.98
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.96
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.79
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	95.79
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	95.71
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	95.6
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.48
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.41
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.32
2j4b_A	138	TAF5, transcription initiation factor TFIID subuni	95.14
2nxp_A	156	Transcription initiation factor TFIID subunit 5; t	94.66
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	94.1
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	93.96
1uuj_A	88	Platelet-activating factor acetylhydrolase IB ALP	93.92
2j49_A	148	Transcription initiation factor TFIID subunit 5; n	93.77
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	93.65
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	93.36
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.26
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	91.49
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	90.31
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	90.31
3qhy_B	282	Beta-lactamase inhibitory protein II; enyzme-inhib	89.64
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	88.82
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.69
3b7f_A	394	Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop	88.48
4hvt_A	711	Ritya.17583.B, post-proline cleaving enzyme; ssgci	88.42
3q6k_A	381	43.2 kDa salivary protein; beta propeller, binding	87.85

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=7.2e-69  Score=648.43  Aligned_cols=567  Identities=22%  Similarity=0.344  Sum_probs=486.5

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      .+.|+||++.|++++|||||+ +||+|+.|++|+|||. +++++.+                   +.+|.+.|++++|||
T Consensus         9 ~~~L~GH~~~V~~~a~spdg~-~las~~~d~~v~iWd~-~~~~~~~-------------------l~gh~~~V~~l~fsp   67 (577)
T 2ymu_A            9 RNRLEAHSSSVRGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT-------------------LTGHSSSVWGVAFSP   67 (577)
T ss_dssp             EEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEECT-TSCEEEE-------------------EECCSSCEEEEEECT
T ss_pred             eeEECCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE-------------------EeCCCCCEEEEEECC
Confidence            366999999999999999998 6899999999999995 6776654                   778999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      ||++||+++.|++|+|||.. ++.+   ..+.+|...|.+++|+||++  +|++++.|+.+++|+.. ........+|..
T Consensus        68 dg~~las~~~d~~i~vWd~~-~~~~---~~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~-~~~~~~~~~~~~  140 (577)
T 2ymu_A           68 DGQTIASASDDKTVKLWNRN-GQLL---QTLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRN-GQLLQTLTGHSS  140 (577)
T ss_dssp             TSSEEEEEETTSCEEEEETT-SCEE---EEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETT-CCEEEEECCCSS
T ss_pred             CCCEEEEEeCCCEEEEEECC-CCEE---EEEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccc-cceeeeccCCCC
Confidence            99999999999999999964 4433   37889999999999999999  89999999999999954 555667788999


Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1103)
                      .+..+.+.+  ++..+++++.++.+++|+... ........+...+.+++++|+++++++++.    ++.|++||. +++
T Consensus       141 ~v~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~  212 (577)
T 2ymu_A          141 SVWGVAFSP--DGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQ  212 (577)
T ss_dssp             CEEEEEECT--TSSCEEEEETTSEEEEECTTS-CEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSC
T ss_pred             ceeeeeeec--CCccceecccccceeccccce-eeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCc
Confidence            999998854  667899999999999998553 445566678889999999999999999986    667999995 677


Q ss_pred             eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeE
Q 001310          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI  646 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i  646 (1103)
                      .+..+.+|.   ..|.+++|+|+++++++++.|+.|++||. +++.+..+..+  ...|.+++|+|+++.+++++.|+.|
T Consensus       213 ~~~~~~~~~---~~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i  286 (577)
T 2ymu_A          213 LLQTLTGHS---SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTV  286 (577)
T ss_dssp             EEEEEECCS---SCEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEEEEecCC---CCEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEE
Confidence            888888887   89999999999999999999999999996 46777777765  4568999999999999999999999


Q ss_pred             EEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceee
Q 001310          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1103)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  726 (1103)
                      ++|+... +.+..+.                                                                 
T Consensus       287 ~~w~~~~-~~~~~~~-----------------------------------------------------------------  300 (577)
T 2ymu_A          287 KLWNRNG-QLLQTLT-----------------------------------------------------------------  300 (577)
T ss_dssp             EEEETTS-CEEEEEC-----------------------------------------------------------------
T ss_pred             EEEeCCC-cEEEEEe-----------------------------------------------------------------
Confidence            9999643 2222221                                                                 


Q ss_pred             eccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCee
Q 001310          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1103)
Q Consensus       727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  806 (1103)
                           +|...|.+++|+|+++.+++++.||.+++|+.....                       +...    .+|...+.
T Consensus       301 -----~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-----------------------~~~~----~~~~~~v~  348 (577)
T 2ymu_A          301 -----GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-----------------------LQTL----TGHSSSVW  348 (577)
T ss_dssp             -----CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-----------------------EEEE----CCCSSCEE
T ss_pred             -----cCCCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-----------------------eEEE----eCCCCCEE
Confidence                 256778889999999999999999999999864321                       1111    14888999


Q ss_pred             EEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC
Q 001310          807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH  885 (1103)
Q Consensus       807 ~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h  885 (1103)
                      +++|+|+++++++++ ++.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|
T Consensus       349 ~~~~s~~g~~l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~  425 (577)
T 2ymu_A          349 GVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGH  425 (577)
T ss_dssp             EEEECTTSSEEEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECC
T ss_pred             EEEECCCCCEEEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCC
Confidence            999999999999997 799999996 5788889999999999999999 8999999999999999995 57888999999


Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEEC
Q 001310          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEA  964 (1103)
Q Consensus       886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~  964 (1103)
                      ...|++++|+||+++|++++.|++|++||... +     .+....+|..   .|.+++|+|||++|+++ .|+.|++||.
T Consensus       426 ~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~-~-----~~~~~~~~~~---~v~~~~~spd~~~las~~~d~~i~iw~~  496 (577)
T 2ymu_A          426 SSSVWGVAFSPDDQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS---SVRGVAFSPDGQTIASASDDKTVKLWNR  496 (577)
T ss_dssp             SSCEEEEEECTTSSEEEEEETTSEEEEEETTS-C-----EEEEEECCSS---CEEEEEECTTSCEEEEEETTSEEEEEET
T ss_pred             CCCeEEEEECCCCCEEEEEcCCCEEEEEECCC-C-----EEEEEcCCCC---CEEEEEEcCCCCEEEEEeCCCEEEEEcC
Confidence            99999999999999999999999999999764 2     2333344443   79999999999999995 7899999995


Q ss_pred             CCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceee
Q 001310          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP 1044 (1103)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1044 (1103)
                       +++++.. +.+|...|++++|+|||++|++++.||+|++||. +++.+..+.                   +|...|. 
T Consensus       497 -~~~~~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~-------------------~h~~~v~-  553 (577)
T 2ymu_A          497 -NGQLLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLT-------------------GHSSSVW-  553 (577)
T ss_dssp             -TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEE-------------------CCSSCEE-
T ss_pred             -CCCEEEE-EeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEc-------------------CCCCCEE-
Confidence             5777776 5689999999999999999999999999999996 566666665                   6888886 


Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEc
Q 001310         1045 HAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus      1045 ~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
                       +++|+|+ +.+|++++.||+|++||
T Consensus       554 -~~~fs~d-g~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          554 -GVAFSPD-GQTIASASSDKTVKLWN  577 (577)
T ss_dssp             -EEEECTT-SSCEEEEETTSCEEEEC
T ss_pred             -EEEEcCC-CCEEEEEeCCCEEEEeC
Confidence             5688998 89999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=1e-66  Score=629.26  Aligned_cols=576  Identities=15%  Similarity=0.181  Sum_probs=477.3

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .+++.+.+++|||||+ +||+++ ++.|+|||+.+++....                   +.+|...|++++|||||++|
T Consensus        16 ~~~g~~~~~~~spdg~-~l~~~~-~~~v~l~~~~~~~~~~~-------------------~~~h~~~v~~~~~spdg~~l   74 (611)
T 1nr0_A           16 TARGTAVVLGNTPAGD-KIQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC   74 (611)
T ss_dssp             CCTTCCCCCEECTTSS-EEEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred             cccCceeEEeeCCCCC-EEEeCC-CCEEEEecCCCcccCeE-------------------ecCCCCceEEEEECCCCcEE
Confidence            4577889999999999 577776 57999999998876654                   77999999999999999999


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC----CceEEEeCCCCceeEEeecCCCc
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      |+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+|||+  .|++++.+    +.|++||  +++.+..+.+|...
T Consensus        75 asg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~  149 (611)
T 1nr0_A           75 ASGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARA  149 (611)
T ss_dssp             EEEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSC
T ss_pred             EEEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee--CCCCcceecCCCCC
Confidence            999999999999997655332 236789999999999999999  67777754    3566666  67788889999999


Q ss_pred             eEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310          488 VYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1103)
Q Consensus       488 v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1103)
                      |.+++|+|  ++. .|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++.    ++.|++||..+++
T Consensus       150 v~~v~f~p--~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~  223 (611)
T 1nr0_A          150 MNSVDFKP--SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGT  223 (611)
T ss_dssp             EEEEEECS--SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCC
T ss_pred             ceEEEECC--CCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCc
Confidence            99999976  443 6999999999999999888888889999999999999999999999986    6669999999999


Q ss_pred             eEEEEe-------cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC-CCCceEEEecCCCEEE
Q 001310          567 IKRTYQ-------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PENPRICFNKNGTLLA  638 (1103)
Q Consensus       567 ~~~~~~-------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~  638 (1103)
                      .+..+.       +|.   ..|.+++|+|++++|++++.|++|++||+.+++.+..+..+... ..+..+.|  +++.++
T Consensus       224 ~~~~~~~~~~~~~~h~---~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~  298 (611)
T 1nr0_A          224 KTGVFEDDSLKNVAHS---GSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALV  298 (611)
T ss_dssp             EEEECBCTTSSSCSSS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEE
T ss_pred             EeeeeccccccccccC---CCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEE
Confidence            888874       455   89999999999999999999999999999999999888654221 12334455  788999


Q ss_pred             EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccccc
Q 001310          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1103)
                      +++.|+.+++|+...+.....+.+|...|.+++++                      |||+++++++.|++|++||+..+
T Consensus       299 s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~s----------------------pdg~~l~s~s~D~~v~~Wd~~~~  356 (611)
T 1nr0_A          299 SISANGFINFVNPELGSIDQVRYGHNKAITALSSS----------------------ADGKTLFSADAEGHINSWDISTG  356 (611)
T ss_dssp             EEETTCCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETTSCEEEEETTTC
T ss_pred             EEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEe----------------------CCCCEEEEEeCCCcEEEEECCCC
Confidence            99999999999999988888889999999999997                      78999999999999999998754


Q ss_pred             CCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCC
Q 001310          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1103)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1103)
                      ...     .....+|...|.+++|++++ .+++++.|+.+++|+.........                 . .....   
T Consensus       357 ~~~-----~~~~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~-----------------~-~~~~~---  409 (611)
T 1nr0_A          357 ISN-----RVFPDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSS-----------------K-AVANK---  409 (611)
T ss_dssp             CEE-----ECSSCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTT-----------------S-CCEEE---
T ss_pred             cee-----eecccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCcccccc-----------------c-eeeee---
Confidence            321     12224588999999999876 588999999999999765321000                 0 00001   


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001310          799 SNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1103)
Q Consensus       799 ~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1103)
                        ......+++++|+|+.++++.++.+++|+  .++ +..+. +...+.+++|+| |+++||+|+.|++|++||+.++..
T Consensus       410 --~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~lwd~~~~~~  482 (611)
T 1nr0_A          410 --LSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHVYKLSGASV  482 (611)
T ss_dssp             --CSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEEEEEETTEE
T ss_pred             --cCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEEEEccCCce
Confidence              23356789999999988888889999998  344 45554 778899999999 899999999999999999987653


Q ss_pred             --EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC-CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-
Q 001310          879 --ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG-WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-  954 (1103)
Q Consensus       879 --~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~-~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-  954 (1103)
                        +.. .+|...|++++|||||++|++++.|++|++|++.+ ++...   .....+|.   ..|.+++|||||++||++ 
T Consensus       483 ~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~---~~~~~~H~---~~V~~v~fspdg~~lasgs  555 (611)
T 1nr0_A          483 SEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---TNSWTFHT---AKVACVSWSPDNVRLATGS  555 (611)
T ss_dssp             EEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC---CCCCCCCS---SCEEEEEECTTSSEEEEEE
T ss_pred             eeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceee---eeeeeecc---cceeEEEECCCCCEEEEEE
Confidence              334 67999999999999999999999999999999987 44211   00122344   389999999999999995 


Q ss_pred             eCCeEEEEECCCceEEE-EeeCCC-CcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          955 HETHLAIYEAEELTCLK-QWFPIS-SVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       955 ~d~~v~iwd~~~~~~~~-~~~~~h-~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      .|++|++||+.++.... ....+| ...|.+++|+||++ |++++.|++|++|++.
T Consensus       556 ~D~~v~lW~~~~~~~~~~~~~~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~  610 (611)
T 1nr0_A          556 LDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP  610 (611)
T ss_dssp             TTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred             CCCcEEEEECCCcccccchhhccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence            89999999999876322 446789 89999999999998 9999999999999973

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=5.6e-65  Score=671.14  Aligned_cols=619  Identities=14%  Similarity=0.181  Sum_probs=514.8

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      ...++.+|.+.|++++|||||+ ++|+|+.||+|+|||+.+++.+..                   +.+|.+.|.+++|+
T Consensus       607 ~~~~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~~-------------------~~~h~~~v~~~~~s  666 (1249)
T 3sfz_A          607 SRLVVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLLD-------------------IKAHEDEVLCCAFS  666 (1249)
T ss_dssp             CSEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred             ceEEEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------eccCCCCEEEEEEe
Confidence            4457789999999999999998 689999999999999999988765                   67899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1103)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  485 (1103)
                      |||++||+++.|++|+|||+.+++.+.   .+.+|...|.+++|+|++...++++|+.|+.|++||+.+++++..+.+|.
T Consensus       667 ~~~~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~  743 (1249)
T 3sfz_A          667 SDDSYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHT  743 (1249)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCS
T ss_pred             cCCCEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCC
Confidence            999999999999999999999987655   67899999999999997655589999999999999999999999999999


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-------------CccEEEEEEccCCCEEEEEecCCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------------GLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------------~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      ..|.+++|++  ++.++++++.||.|++||+.+......+...             ...+.+++|+|+|+.+++++    
T Consensus       744 ~~v~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~----  817 (1249)
T 3sfz_A          744 NSVNHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA----  817 (1249)
T ss_dssp             SCEEEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE----
T ss_pred             CCEEEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc----
Confidence            9999999965  6789999999999999999988766554321             23678899999999999986    


Q ss_pred             CceeEEEEeCCCCeeEEEEe-cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          553 GESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                       ++.+.+||..++.....+. +|.   ..+.+++|+|+++.+++++.||.|++||+.++..+..+..|  ...|.+++|+
T Consensus       818 -~~~v~~~d~~~~~~~~~~~~~~~---~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h--~~~v~~v~~s  891 (1249)
T 3sfz_A          818 -KNKVLLFDIHTSGLLAEIHTGHH---STIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGH--LSWVHGVMFS  891 (1249)
T ss_dssp             -TTEEEEEETTTCCEEEEEECSSS---SCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCC--SSCEEEEEEC
T ss_pred             -CCcEEEEEecCCCceeEEcCCCC---CceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCC--ccceEEEEEC
Confidence             3459999999999888776 444   89999999999999999999999999999999999988876  4569999999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1103)
Q Consensus       632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1103)
                      |+|+++++++.|+.|++|+..+.........  .......+.                      +++..++.....+.+.
T Consensus       892 pdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~--~~~~~~~~~----------------------~~~~~~~~~~~~~~~~  947 (1249)
T 3sfz_A          892 PDGSSFLTASDDQTIRVWETKKVCKNSAIVL--KQEIDVVFQ----------------------ENETMVLAVDNIRGLQ  947 (1249)
T ss_dssp             TTSSEEEEEETTSCEEEEEHHHHHSCCSSSE--EEEEEEEEE----------------------TTEEEEEEEESSSSEE
T ss_pred             CCCCEEEEEeCCCeEEEEEccccceeeeecc--cceeeEEEc----------------------CCCcEEEEecCCcceE
Confidence            9999999999999999999764322111110  001111121                      2333344444445555


Q ss_pred             cccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCce
Q 001310          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1103)
Q Consensus       712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1103)
                      ++......   ...      .+...+.+++|+|+++.+++++.+|.+++|++.....                      .
T Consensus       948 ~~~~~~~~---~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~----------------------~  996 (1249)
T 3sfz_A          948 LIAGKTGQ---IDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRV----------------------F  996 (1249)
T ss_dssp             EEEESSCC---EEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSC----------------------E
T ss_pred             EEecCcce---EEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCce----------------------e
Confidence            55433211   111      1346799999999999999999999999998765321                      2


Q ss_pred             eeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 001310          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1103)
Q Consensus       792 ~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1103)
                      ...    .+|...|.+++|+|+|+++++++ |+.|++||+.+++... +..|...+.+++|+| ++ .+++++.||.|++
T Consensus       997 ~~~----~~h~~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~v 1069 (1249)
T 3sfz_A          997 SSG----VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKV 1069 (1249)
T ss_dssp             EEC----CCCSSCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEE
T ss_pred             eec----ccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEE
Confidence            211    14889999999999999999997 7999999999988764 557889999999999 65 6788999999999


Q ss_pred             EEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCE
Q 001310          871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1103)
Q Consensus       871 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  950 (1103)
                      ||+.+++.+..+.+|.+.|.+++|+||+++|++++.||+|++||+.+++     .+....+|..   .|.+++|||||++
T Consensus      1070 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~-----~~~~l~~h~~---~v~~~~~s~dg~~ 1141 (1249)
T 3sfz_A         1070 WNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLS-----PLHELKGHNG---CVRCSAFSLDGIL 1141 (1249)
T ss_dssp             EETTTTCCCEEEECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSS-----CSBCCCCCSS---CEEEEEECSSSSE
T ss_pred             EECCCCceeEEEcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcc-----eeeeeccCCC---cEEEEEECCCCCE
Confidence            9999999999999999999999999999999999999999999999866     3445556554   8999999999999


Q ss_pred             EEEE-eCCeEEEEECCCceEEEEe--------eCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccc
Q 001310          951 FLLV-HETHLAIYEAEELTCLKQW--------FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021 (1103)
Q Consensus       951 l~~~-~d~~v~iwd~~~~~~~~~~--------~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~ 1021 (1103)
                      |+++ .||.|++||+.+++.+..+        ..+|...|++++|||||++|++++  |+|++||+.+++.+..+.    
T Consensus      1142 lat~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~---- 1215 (1249)
T 3sfz_A         1142 LATGDDNGEIRIWNVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFY---- 1215 (1249)
T ss_dssp             EEEEETTSCCCEEESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCC----
T ss_pred             EEEEeCCCEEEEEECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeee----
Confidence            9995 7899999999999887653        256899999999999999999885  899999999998776555    


Q ss_pred             cCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310         1022 LRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus      1022 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
                                     +|...|.  +++|+|+ +.+|++++.||.|++|++.+
T Consensus      1216 ---------------~~~~~i~--~~~~s~d-g~~l~~~~~dg~v~vw~l~e 1249 (1249)
T 3sfz_A         1216 ---------------TNGTNLK--KIHVSPD-FRTYVTVDNLGILYILQVLE 1249 (1249)
T ss_dssp             ---------------CSSCCCC--CCEECSS-SCCEEEECTTCCEEEECCCC
T ss_pred             ---------------ccCCccc--EEEECCC-CCEEEEecCCcEEEEEeecC
Confidence                           3455565  4678888 88999999999999999853

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=100.00  E-value=3.4e-63  Score=598.82  Aligned_cols=555  Identities=22%  Similarity=0.346  Sum_probs=470.8

Q ss_pred             CCCCCCCcchhhccccccCCccccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeee
Q 001310          297 IPDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFK  376 (1103)
Q Consensus       297 ~~~fsP~~~~~~~~~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~  376 (1103)
                      ++.|||.+..+..-- ......+.+....++++|.+|++.|++++|||||+ +||+|+.|++|+|||. +++.+..    
T Consensus        21 ~~a~spdg~~las~~-~d~~v~iWd~~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~-~~~~~~~----   93 (577)
T 2ymu_A           21 GVAFSPDGQTIASAS-DDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNR-NGQLLQT----   93 (577)
T ss_dssp             EEEECTTSSCEEEEE-TTSEEEEECTTSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEET-TSCEEEE----
T ss_pred             EEEECCCCCEEEEEe-CCCEEEEEECCCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEEC-CCCEEEE----
Confidence            577889887664331 12223344556788999999999999999999998 6899999999999996 5665554    


Q ss_pred             EeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCce
Q 001310          377 VWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQI  456 (1103)
Q Consensus       377 ~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~  456 (1103)
                                     +.+|...|.+++|+||+++|++++.|+.+++|+.....    .....+|...|.++.|+|++.  
T Consensus        94 ---------------~~~~~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~----~~~~~~~~~~v~~~~~~~~~~--  152 (577)
T 2ymu_A           94 ---------------LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL----LQTLTGHSSSVWGVAFSPDGQ--  152 (577)
T ss_dssp             ---------------ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCCE----EEEECCCSSCEEEEEECTTSS--
T ss_pred             ---------------EECCCCCEEEEEECCCCCEEEEEcCCCceeecccccce----eeeccCCCCceeeeeeecCCc--
Confidence                           77899999999999999999999999999999976542    225678999999999999999  


Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  536 (1103)
                      .+++++.++.+++|+ ...........|...|.++++.+  ++.++++++.||.|++||. +.+....+..+...+.+++
T Consensus       153 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~  228 (577)
T 2ymu_A          153 TIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVA  228 (577)
T ss_dssp             CEEEEETTSEEEEEC-TTSCEEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEE
T ss_pred             cceecccccceeccc-cceeeeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEE
Confidence            789999999999999 45566677788999999999854  6789999999999999995 4566677888999999999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE
Q 001310          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI  616 (1103)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~  616 (1103)
                      |+|++++|++++.    ++.|++||. +++.+..+.+|.   ..|.+++|+|+++.+++++.|+.|++||. +++.+..+
T Consensus       229 ~s~dg~~l~~~~~----d~~i~~w~~-~~~~~~~~~~~~---~~v~~v~~~~d~~~l~~~~~d~~i~~w~~-~~~~~~~~  299 (577)
T 2ymu_A          229 FSPDGQTIASASD----DKTVKLWNR-NGQLLQTLTGHS---SSVNGVAFRPDGQTIASASDDKTVKLWNR-NGQLLQTL  299 (577)
T ss_dssp             ECTTSSCEEEEET----TSCEEEECT-TSCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEET-TSCEEEEE
T ss_pred             ECCCCCEEEEEeC----CCEEEEEeC-CCCEEEEEecCC---CCEEEEEEcCCCCEEEEEeCCCEEEEEeC-CCcEEEEE
Confidence            9999999999876    566999995 567788888877   89999999999999999999999999996 45677777


Q ss_pred             cCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCC
Q 001310          617 DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE  696 (1103)
Q Consensus       617 ~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  696 (1103)
                      ..|  ...|.+++|+|+++++++++.|+.|++|+..... +..+                                    
T Consensus       300 ~~h--~~~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~-~~~~------------------------------------  340 (577)
T 2ymu_A          300 TGH--SSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQH-LQTL------------------------------------  340 (577)
T ss_dssp             CCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTSCE-EEEE------------------------------------
T ss_pred             ecC--CCCeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe-eEEE------------------------------------
Confidence            665  4568999999999999999999999999976432 1111                                    


Q ss_pred             CCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccccc
Q 001310          697 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT  776 (1103)
Q Consensus       697 d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  776 (1103)
                                                        .+|...+.+++|+|+++.+++++.+|.+++|+....          
T Consensus       341 ----------------------------------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~~----------  376 (577)
T 2ymu_A          341 ----------------------------------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ----------  376 (577)
T ss_dssp             ----------------------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTCC----------
T ss_pred             ----------------------------------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCCC----------
Confidence                                              125567889999999999999999999999984321          


Q ss_pred             ccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCC
Q 001310          777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD  855 (1103)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d  855 (1103)
                                   .+...  .  +|...|.+++|+||+++|++++ |+.|++||. +++.+..+.+|...|++++|+| +
T Consensus       377 -------------~~~~~--~--~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d  437 (577)
T 2ymu_A          377 -------------LLQTL--T--GHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-D  437 (577)
T ss_dssp             -------------EEEEE--E--CCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-T
T ss_pred             -------------EEEEe--c--CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-C
Confidence                         11111  1  4888999999999999999997 799999996 5788889999999999999999 8


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1103)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1103)
                      +++|++++.|++|++||. +++.+..+.+|...|.+++|+||+++|++++.|++|++||... +     .++.+.+|.. 
T Consensus       438 ~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~~-~-----~~~~~~~h~~-  509 (577)
T 2ymu_A          438 DQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-Q-----LLQTLTGHSS-  509 (577)
T ss_dssp             SSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETTS-C-----EEEEEECCSS-
T ss_pred             CCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCCC-C-----EEEEEeCCCC-
Confidence            999999999999999996 5778889999999999999999999999999999999999653 3     3334455554 


Q ss_pred             CCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001310          936 APSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus       936 ~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
                        .|.+++|+|||++|+++ .|+.|++||. +++++.. +.+|...|++++|+|||++|+|++.|++|++||
T Consensus       510 --~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~-~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd  577 (577)
T 2ymu_A          510 --SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQT-LTGHSSSVWGVAFSPDGQTIASASSDKTVKLWN  577 (577)
T ss_dssp             --CEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEE-EECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             --CEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEE-EcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence              89999999999999985 7899999996 5788777 568999999999999999999999999999997

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=100.00  E-value=7.4e-64  Score=604.34  Aligned_cols=572  Identities=11%  Similarity=0.107  Sum_probs=459.1

Q ss_pred             cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       393 ~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      ..+.+.+.+++|||||++||+++ +++|++|++.+++...   .+.+|...|++++|+|||+  +|++|+.|++|+|||+
T Consensus        15 ~~~~g~~~~~~~spdg~~l~~~~-~~~v~l~~~~~~~~~~---~~~~h~~~v~~~~~spdg~--~lasg~~d~~v~lWd~   88 (611)
T 1nr0_A           15 RTARGTAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTE---IYTEHSHQTTVAKTSPSGY--YCASGDVHGNVRIWDT   88 (611)
T ss_dssp             CCCTTCCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEES
T ss_pred             CcccCceeEEeeCCCCCEEEeCC-CCEEEEecCCCcccCe---EecCCCCceEEEEECCCCc--EEEEEeCCCCEEEeEC
Confidence            34678889999999999999997 5699999998776444   7889999999999999999  8999999999999998


Q ss_pred             CCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCC-EEE
Q 001310          473 VTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGR-RLF  545 (1103)
Q Consensus       473 ~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~-~l~  545 (1103)
                      .+++  ....+.+|.+.|.+++|+|  ++..|++++.+    +.|++||  .+.....+..|...|.+++|+|++. .|+
T Consensus        89 ~~~~~~~~~~~~~~~~~v~~v~fs~--dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~gh~~~v~~v~f~p~~~~~l~  164 (611)
T 1nr0_A           89 TQTTHILKTTIPVFSGPVKDISWDS--ESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTGQARAMNSVDFKPSRPFRII  164 (611)
T ss_dssp             SSTTCCEEEEEECSSSCEEEEEECT--TSCEEEEEECCSSCSEEEEETT--TCCBCBCCCCCSSCEEEEEECSSSSCEEE
T ss_pred             CCCcceeeEeecccCCceEEEEECC--CCCEEEEEECCCCceeEEEEee--CCCCcceecCCCCCceEEEECCCCCeEEE
Confidence            7654  4567889999999999965  67889988865    3677776  5556667788999999999999987 588


Q ss_pred             EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----C
Q 001310          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----G  620 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~  620 (1103)
                      +++.    ++.|++||..+++....+.+|.   ..|.+++|+|++++|++++.|++|++||+.+++.+..+...     .
T Consensus       165 s~s~----D~~v~lwd~~~~~~~~~l~~H~---~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~  237 (611)
T 1nr0_A          165 SGSD----DNTVAIFEGPPFKFKSTFGEHT---KFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVA  237 (611)
T ss_dssp             EEET----TSCEEEEETTTBEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCS
T ss_pred             EEeC----CCeEEEEECCCCeEeeeecccc---CceEEEEECCCCCEEEEEECCCcEEEEECCCCcEeeeeccccccccc
Confidence            8876    6679999999999999999888   89999999999999999999999999999999988887421     3


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccccc---ceeeeEEecCCceeeeeccCCceEecCCCCCC
Q 001310          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD---NLRKLSVNPISTVTGAGIANGSVSVNEDPKED  697 (1103)
Q Consensus       621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~---~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d  697 (1103)
                      +...|.+++|+|+|++|++++.|++|++||+.+++.+..+..+..   ....+.                        .+
T Consensus       238 h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~------------------------~~  293 (611)
T 1nr0_A          238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGII------------------------WT  293 (611)
T ss_dssp             SSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEE------------------------EC
T ss_pred             cCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEE------------------------Ec
Confidence            455799999999999999999999999999999887766543211   111111                        24


Q ss_pred             CccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccc
Q 001310          698 VKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTK  777 (1103)
Q Consensus       698 ~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~  777 (1103)
                      +..+++++.|+.+++|+......   .   ....+|...|.+++|+|+|++|++++.|+.|++||+.....         
T Consensus       294 ~~~l~s~s~d~~i~~~~~~~~~~---~---~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~---------  358 (611)
T 1nr0_A          294 KQALVSISANGFINFVNPELGSI---D---QVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS---------  358 (611)
T ss_dssp             SSCEEEEETTCCEEEEETTTTEE---E---EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE---------
T ss_pred             CCEEEEEeCCCcEEEEeCCCCCc---c---eEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce---------
Confidence            77899999999999999764321   1   11246899999999999999999999999999999764321         


Q ss_pred             cCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEE---ecCCCCCeeEEEEcCC
Q 001310          778 VPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILT---IMPPSPTATSLAFNPH  854 (1103)
Q Consensus       778 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~---~~~~~~~i~~l~~s~~  854 (1103)
                                   ....   ..+|...|.+++|++++.++..+.|+.+++|+..++.....   .........+++|+| 
T Consensus       359 -------------~~~~---~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-  421 (611)
T 1nr0_A          359 -------------NRVF---PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-  421 (611)
T ss_dssp             -------------EECS---SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-
T ss_pred             -------------eeec---ccCCcceEEEEEECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-
Confidence                         1111   12488999999999888766555689999999876543210   001234567899999 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc
Q 001310          855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT  934 (1103)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  934 (1103)
                      ++++++++ .++.+++|+  .++ +..+. |...+.+++|+|||++||+++.|++|++||+.++....   +.. .+|. 
T Consensus       422 dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~-  491 (611)
T 1nr0_A          422 DGDIAVAA-CYKHIAIYS--HGK-LTEVP-ISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP-  491 (611)
T ss_dssp             TSSCEEEE-ESSEEEEEE--TTE-EEEEE-CSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS-
T ss_pred             CCcEEEEE-eCceEEEEe--CCc-eeeee-cCCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC-
Confidence            78777766 467899998  344 55555 88899999999999999999999999999998765322   122 2333 


Q ss_pred             CCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC-ceEEEE-eeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310          935 LAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE-LTCLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       935 ~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~-~~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                        ..|.+++|||||++|+++ .|++|++||+.+ ++.... ...+|...|.+++|||||++|++++.|++|++||+.++.
T Consensus       492 --~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~  569 (611)
T 1nr0_A          492 --AEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPS  569 (611)
T ss_dssp             --SCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTT
T ss_pred             --CceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeeeeeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcc
Confidence              379999999999999995 889999999998 666554 344599999999999999999999999999999998765


Q ss_pred             eEE-eeccccccCCCCCCCceeeEeecc-CCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1012 VQC-RILSTAYLRPTTSHDKILCFCYCS-CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1012 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      ... ...                  .+| ...|.  +++|+|+ +. |++++.||+|++|++
T Consensus       570 ~~~~~~~------------------~~h~~~~v~--~v~fs~d-~~-l~s~~~D~~i~lW~~  609 (611)
T 1nr0_A          570 DHPIIIK------------------GAHAMSSVN--SVIWLNE-TT-IVSAGQDSNIKFWNV  609 (611)
T ss_dssp             SCCEEET------------------TSSTTSCEE--EEEEEET-TE-EEEEETTSCEEEEEC
T ss_pred             cccchhh------------------ccCcccCee--EEEEcCC-CE-EEEecCCCCEEEEec
Confidence            221 111                  146 56676  5677787 66 999999999999997

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=9.3e-61  Score=582.92  Aligned_cols=558  Identities=11%  Similarity=0.159  Sum_probs=485.0

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC----CeeeeeeeeEeeccccccceeeeeccCCCcc-EEEEEEC
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----QKLFIRNFKVWDIGACSMLFKTALVRDPGVS-VNRVVWS  405 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~~~~s  405 (1103)
                      ..|.+.|.+++|||||+ +||+++ ++.|+|||+.++    +....                   +.+|... |.+++|+
T Consensus        15 ~~~~~~v~~~~~spdg~-~l~~~~-~~~v~v~~~~~~~~~~~~~~~-------------------~~~h~~~~v~~~~~s   73 (615)
T 1pgu_A           15 STQRNFTTHLSYDPTTN-AIAYPC-GKSAFVRCLDDGDSKVPPVVQ-------------------FTGHGSSVVTTVKFS   73 (615)
T ss_dssp             CCCTTCCCCCEEETTTT-EEEEEE-TTEEEEEECCSSCCSSCSEEE-------------------ECTTTTSCEEEEEEC
T ss_pred             CCccCceeEEEECCCCC-EEEEec-CCeEEEEECCCCCCccccceE-------------------EecCCCceEEEEEEC
Confidence            36888999999999999 577776 789999999988    65544                   7789999 9999999


Q ss_pred             C--CCCEEEEEeCCCeEEEEEecCCC-----ccccceEeccccccEEEEEEecCCCceEEEEEcCC----CceEEEeCCC
Q 001310          406 P--DGSLLGVAYSKHIVQLYAYHGGS-----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVT  474 (1103)
Q Consensus       406 p--dg~~las~~~d~~i~iwd~~~~~-----~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~  474 (1103)
                      |  |+++||+++.||.|++||+.++.     .......+.+|...|.+++|+|+++  ++++++.+    +.|++||  +
T Consensus        74 p~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d--~  149 (615)
T 1pgu_A           74 PIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD--S  149 (615)
T ss_dssp             SSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT--T
T ss_pred             cCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE--C
Confidence            9  99999999999999999997651     1123336778999999999999999  78888877    6788887  7


Q ss_pred             CceeEEeecCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCeeEEecCCCc---cEEEEEEccC-CCEEEEEec
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGARVDYDAPGL---GCTRMAYSAN-GRRLFSCGT  549 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~---~i~~~~~s~d-g~~l~~~~~  549 (1103)
                      ++.+..+.+|...|.+++|++  ++. .+++++.|+.|++||+.+.+....+..+..   .|.+++|+|+ ++++++++.
T Consensus       150 ~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  227 (615)
T 1pgu_A          150 GNSLGEVSGHSQRINACHLKQ--SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS  227 (615)
T ss_dssp             CCEEEECCSCSSCEEEEEECS--SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET
T ss_pred             CCcceeeecCCccEEEEEECC--CCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC
Confidence            788999999999999999965  444 899999999999999999988889988888   9999999999 999999986


Q ss_pred             CCCCceeEEEEeCCCCeeEEEE-e---cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC--CC
Q 001310          550 SKEGESFLVEWNESEGAIKRTY-Q---GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG--LP  623 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~-~---~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~  623 (1103)
                          ++.|++||+.+++.+..+ .   .|.   ..|.+++|+ +++++++++.||.|++||+.+++.+..+..+..  ..
T Consensus       228 ----dg~i~vwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~  299 (615)
T 1pgu_A          228 ----DRKISCFDGKSGEFLKYIEDDQEPVQ---GGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGN  299 (615)
T ss_dssp             ----TCCEEEEETTTCCEEEECCBTTBCCC---SCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGG
T ss_pred             ----CCeEEEEECCCCCEeEEecccccccC---CceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccC
Confidence                566999999999999888 5   555   899999999 999999999999999999999999988876521  13


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1103)
                      .+.++.|+ +++++++++.++.|++|++.+++.+..+.+|...+.++++ |                      +   +++
T Consensus       300 ~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~~v~~~~~-~----------------------~---l~~  352 (615)
T 1pgu_A          300 QQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTISGHNKGITALTV-N----------------------P---LIS  352 (615)
T ss_dssp             CEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEECCCSSCEEEEET-T----------------------T---TEE
T ss_pred             ceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEeCCCCCEEEEEe-c----------------------C---cEE
Confidence            45677775 8999999999999999999999899999999999988887 5                      1   788


Q ss_pred             eccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeee
Q 001310          704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1103)
Q Consensus       704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  783 (1103)
                      ++.|+.+++|++.        .+.   ..|...|.+++| +++..+++++.||.+++|++....                
T Consensus       353 ~~~dg~i~~w~~~--------~~~---~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~----------------  404 (615)
T 1pgu_A          353 GSYDGRIMEWSSS--------SMH---QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE----------------  404 (615)
T ss_dssp             EETTSCEEETTTT--------EEE---CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE----------------
T ss_pred             ECCCCeEEEEEch--------hhc---CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc----------------
Confidence            9999999999987        122   458899999999 667889999999999999865421                


Q ss_pred             cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 001310          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1103)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1103)
                                       ....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+++++|+   +++|++++
T Consensus       405 -----------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~~  463 (615)
T 1pgu_A          405 -----------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVGL  463 (615)
T ss_dssp             -----------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEEE
T ss_pred             -----------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEee
Confidence                             1226788999999999999988999999999999988887 78899999998   67999999


Q ss_pred             C-CCeEEEEEcCCceeE-EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCC-cccCCCCce
Q 001310          864 D-DSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSET  940 (1103)
Q Consensus       864 ~-dg~v~iwd~~~~~~~-~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~  940 (1103)
                      . ||.|++||+.+++.. ..+.+|...|.+++|+|++++|++++.||.|++||+.+++.     +....+ |..   .|.
T Consensus       464 ~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~-----~~~~~~~h~~---~v~  535 (615)
T 1pgu_A          464 EEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KTSRWAFRTS---KIN  535 (615)
T ss_dssp             TTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EECCSCCCSS---CEE
T ss_pred             cCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcc-----eeEeecCCCC---cee
Confidence            9 999999999988766 77788999999999999999999999999999999998764     333444 443   899


Q ss_pred             EEEEcC----------CCCEEEEE-eCCeEEEEECCCc-eEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          941 HIQFHK----------DQTRFLLV-HETHLAIYEAEEL-TCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       941 ~l~fs~----------dg~~l~~~-~d~~v~iwd~~~~-~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      +++|+|          ++++|+++ .|+.|++||+.++ +++.. +.+|...|++++|+||++ |++++.||+|++|++.
T Consensus       536 ~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~-~~~h~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~  613 (615)
T 1pgu_A          536 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKA-LNAHKDGVNNLLWETPST-LVSSGADACIKRWNVV  613 (615)
T ss_dssp             EEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEE-TTSSTTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred             EEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechh-hhcCccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence            999999          99999995 7899999999998 55555 778999999999999999 9999999999999987


Q ss_pred             C
Q 001310         1009 N 1009 (1103)
Q Consensus      1009 ~ 1009 (1103)
                      +
T Consensus       614 ~  614 (615)
T 1pgu_A          614 L  614 (615)
T ss_dssp             -
T ss_pred             c
Confidence            5

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=100.00  E-value=1.9e-58  Score=608.82  Aligned_cols=589  Identities=16%  Similarity=0.177  Sum_probs=499.2

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      .+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++++.|++|++|
T Consensus       610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw  684 (1249)
T 3sfz_A          610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW  684 (1249)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence            377899999999999999999999999999999999987555   6789999999999999999  89999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      |+.+++.+..+.+|...|.+++|++..++.++++++.||.|++||+.++.....+..|...|.+++|+|+++++++++. 
T Consensus       685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~-  763 (1249)
T 3sfz_A          685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA-  763 (1249)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred             ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence            9999999999999999999999988777889999999999999999999999999999999999999999999999986 


Q ss_pred             CCCceeEEEEeCCCCeeEEEEeccc----------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  620 (1103)
                         ++.|++||+.+++....+....          .....+.+++|+|++..+++++ ++.+.+||+.++..+..+... 
T Consensus       764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~-  838 (1249)
T 3sfz_A          764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTG-  838 (1249)
T ss_dssp             ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECS-
T ss_pred             ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcCC-
Confidence               6679999999998877665321          1123688899999999999887 689999999999988877632 


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcc
Q 001310          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1103)
Q Consensus       621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1103)
                      +...+.+++|+|+++++++++.++.|++|+..++..+..+.+|...|.+++|+                      |+++.
T Consensus       839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~~~v~~v~~s----------------------pdg~~  896 (1249)
T 3sfz_A          839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVMFS----------------------PDGSS  896 (1249)
T ss_dssp             SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCccceEEEEEC----------------------CCCCE
Confidence            24579999999999999999999999999999999999999999999999997                      78889


Q ss_pred             ceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCC
Q 001310          701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP  780 (1103)
Q Consensus       701 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  780 (1103)
                      +++++.|+.+++|++.........        .......+.+.+++..++.....+.+.++.....              
T Consensus       897 l~s~s~dg~v~vw~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------  954 (1249)
T 3sfz_A          897 FLTASDDQTIRVWETKKVCKNSAI--------VLKQEIDVVFQENETMVLAVDNIRGLQLIAGKTG--------------  954 (1249)
T ss_dssp             EEEEETTSCEEEEEHHHHHSCCSS--------SEEEEEEEEEETTEEEEEEEESSSSEEEEEESSC--------------
T ss_pred             EEEEeCCCeEEEEEccccceeeee--------cccceeeEEEcCCCcEEEEecCCcceEEEecCcc--------------
Confidence            999999999999997643222211        1123345667777777777777777776653322              


Q ss_pred             eeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEE
Q 001310          781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI  859 (1103)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l  859 (1103)
                              ....       .+...+.+++++|+++++++++ +|.|++||+.+++....+.+|...|++++|+| ++++|
T Consensus       955 --------~~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l 1018 (1249)
T 3sfz_A          955 --------QIDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTA-DGKTL 1018 (1249)
T ss_dssp             --------CEEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCCCCEEECS-SSSCE
T ss_pred             --------eEEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCceEEEEECC-CCCEE
Confidence                    1111       1466799999999999999998 79999999999999999999999999999999 89999


Q ss_pred             EEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCc
Q 001310          860 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE  939 (1103)
Q Consensus       860 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  939 (1103)
                      ++++.||.|++||+.+++.. .+.+|...|.+++|+|++ .+++++.||.|++||+.+++...     ...+|..   .|
T Consensus      1019 ~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~-----~~~~~~~---~v 1088 (1249)
T 3sfz_A         1019 ISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIER-----DFTCHQG---TV 1088 (1249)
T ss_dssp             EEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCE-----EEECCSS---CC
T ss_pred             EEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeE-----EEcccCC---cE
Confidence            99999999999999998876 455799999999999975 67889999999999999977433     3334443   79


Q ss_pred             eEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeecc
Q 001310          940 THIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1103)
Q Consensus       940 ~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~ 1018 (1103)
                      .+++|+|||++++++ .|+.|++||+.+++++.. +.+|...|++++|+|||++|++++.||+|++||+.+++.+..+.+
T Consensus      1089 ~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-l~~h~~~v~~~~~s~dg~~lat~~~dg~i~vwd~~~~~~~~~~~~ 1167 (1249)
T 3sfz_A         1089 LSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-LKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAP 1167 (1249)
T ss_dssp             CCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-CCCCSSCEEEEEECSSSSEEEEEETTSCCCEEESSSSCCCCCCCC
T ss_pred             EEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-eccCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEecc
Confidence            999999999999995 889999999999998876 668999999999999999999999999999999999987765532


Q ss_pred             ccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310         1019 TAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus      1019 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
                      .....          ...+|...|.  +++|+|+ +.+|++++  |.|++||+...+.
T Consensus      1168 ~~~~~----------~~~~~~~~v~--~l~fs~d-g~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A         1168 ISVEE----------GTATHGGWVT--DVCFSPD-SKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp             CC-----------------CCSCCC--EEEECTT-SSCEEEES--SSEEEBCSSSCBC
T ss_pred             ccccc----------cccccCceEE--EEEECCC-CCEEEECC--CeEEEEECCCCce
Confidence            21111          0124666676  6788998 88888875  8999999865443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-57  Score=567.34  Aligned_cols=595  Identities=11%  Similarity=0.102  Sum_probs=451.6

Q ss_pred             ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      ...+|.+.|++++|+|||+ +||+|+.||+|+|||..+++....                    ..|...|.+++|+| |
T Consensus        12 ~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~~--------------------~~~~~~V~~l~fsp-g   69 (902)
T 2oaj_A           12 NKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVIK--------------------LEDRSAIKEMRFVK-G   69 (902)
T ss_dssp             EEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEEE--------------------CSSCCCEEEEEEET-T
T ss_pred             cccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEEE--------------------cCCCCCEEEEEEcC-C
Confidence            3459999999999999998 799999999999999887665432                    24788999999999 8


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee----------
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----------  478 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----------  478 (1103)
                      ++||+++.|++|+|||+.+++.+.   .+. |...|++++|+|+++  ++++|+.||+|++||+.++++.          
T Consensus        70 ~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~  143 (902)
T 2oaj_A           70 IYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKS  143 (902)
T ss_dssp             TEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHHHH
T ss_pred             CEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccccc
Confidence            899999999999999999987655   443 668899999999999  8999999999999999988764          


Q ss_pred             -EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC------------------CccEEEEEEcc
Q 001310          479 -YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------------------GLGCTRMAYSA  539 (1103)
Q Consensus       479 -~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------------------~~~i~~~~~s~  539 (1103)
                       ..+.+|.++|.+++|+|. ++..+++++.||.| +||+++.+....+..+                  ...|.+++|+|
T Consensus       144 ~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fsp  221 (902)
T 2oaj_A          144 SFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHP  221 (902)
T ss_dssp             HTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECT
T ss_pred             ccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcC
Confidence             234679999999999864 34689999999999 9999998877777654                  35799999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCCCeeEEE--Ee---ccc----------ccCCceEEEEEc----CCC-CEEEEEeCC
Q 001310          540 NGRRLFSCGTSKEGESFLVEWNESEGAIKRT--YQ---GLQ----------LQHNSVSVVHFD----TAK-DQILAAGDD  599 (1103)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~~----------~~~~~v~~~~~~----~~~-~~l~~~~~d  599 (1103)
                      +|++|++++.    ++.|++||+.+++.+..  +.   .|.          .+...|.+++|+    |++ ..+++|+.+
T Consensus       222 dg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~  297 (902)
T 2oaj_A          222 NSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSI  297 (902)
T ss_dssp             TSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECS
T ss_pred             CCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCC
Confidence            9999999986    56699999999987654  21   121          123579999995    443 456667665


Q ss_pred             -----CcEEEEECC------------------CCeeEEEEcCCCCCCCCceEEEec----------CCCEEEEEECCCeE
Q 001310          600 -----HVIKIWDMN------------------KVQLLTTIDAGGGLPENPRICFNK----------NGTLLAVIANENRI  646 (1103)
Q Consensus       600 -----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~g~~l~~~~~dg~i  646 (1103)
                           +.+.+|++.                  +++....+... +...+..+.+.+          ++..+++++.|+.|
T Consensus       298 ~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l  376 (902)
T 2oaj_A          298 SRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLP-TNVPIVNILPIPRQSPYFAGCHNPGLILLILGNGEI  376 (902)
T ss_dssp             TTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCS-SSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTSCE
T ss_pred             CCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEecC-CCCceEEEEECCCCCCCcCCCCCceeEEEEcCCCcE
Confidence                 378899852                  22334444321 123467777755          34578999999999


Q ss_pred             EEEEcCCCCeeEe-------ccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccC
Q 001310          647 KILETPESNSVDA-------AGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1103)
Q Consensus       647 ~iw~~~~~~~~~~-------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  719 (1103)
                      ++|++.++.....       +..+...++++++++.                                 ..++|+.....
T Consensus       377 ~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~---------------------------------~~~~w~~~~~~  423 (902)
T 2oaj_A          377 ETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASV---------------------------------PNKLWLGALSA  423 (902)
T ss_dssp             EEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEE---------------------------------EHHHHHHHHHT
T ss_pred             EEEECCCCCcccccccCCCcccccCCCeeEEEEEEc---------------------------------CHHHHHHHHhc
Confidence            9999987754322       3445566776666521                                 22345432111


Q ss_pred             CccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCC
Q 001310          720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  799 (1103)
Q Consensus       720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (1103)
                      ....   ..+..+|...+.+++|+|+++.+++++.|++|++||+.......         .+++...      .......
T Consensus       424 ~~~~---~~~l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~---------~~~~~~~------l~~~~~~  485 (902)
T 2oaj_A          424 AQNK---DYLLKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQD---------NASFEVN------LSRTLNK  485 (902)
T ss_dssp             TBCC---CCSCCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTT---------TBCEEEE------HHHHTTC
T ss_pred             ccCC---CCcccCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccC---------CceEEee------chhhcCC
Confidence            1111   11234577788889999999999999999999999987653200         0000000      0000012


Q ss_pred             CCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCce--------------------------------------------
Q 001310          800 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFK--------------------------------------------  834 (1103)
Q Consensus       800 ~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~--------------------------------------------  834 (1103)
                      +|...|.+++|+|||++||+++ ||+|++||+.+++                                            
T Consensus       486 ~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  565 (902)
T 2oaj_A          486 AKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGF  565 (902)
T ss_dssp             SSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEE
T ss_pred             CCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCcc
Confidence            5889999999999999999998 7999999998662                                            


Q ss_pred             -eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE-----Eec-cCCCCEEEEEEc-----cCC---C
Q 001310          835 -TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS-----KLE-GHSKRVTGLVFS-----DAL---N  899 (1103)
Q Consensus       835 -~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-----~l~-~h~~~V~~l~~s-----~dg---~  899 (1103)
                       ++..+.+|.+.|++++||| || +||+|+.|++|++||+.++..+.     .+. +|.+.|++++||     |||   +
T Consensus       566 ~~~~~l~~h~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~  643 (902)
T 2oaj_A          566 MPSTAVHANKGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSI  643 (902)
T ss_dssp             EEEEEECCCSCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEE
T ss_pred             ceeEEEEcCCCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcce
Confidence             4677888999999999999 88 99999999999999998877653     233 899999999999     886   8


Q ss_pred             EEEEEeCCCeEEEEEc---CCCceeeeeeeecCCCccc--CCCCceEEE-Ec----------------------CCCCEE
Q 001310          900 ILVSSGGDAQIFVWDV---DGWGIQTCRSLQTPDGVMT--LAPSETHIQ-FH----------------------KDQTRF  951 (1103)
Q Consensus       900 ~l~s~s~dg~I~iwd~---~~~~~~~~~~~~~~~~~~~--~~~~v~~l~-fs----------------------~dg~~l  951 (1103)
                      +|++++.|++|++||+   .+|+...     .+.++..  ..++|.+++ |+                      ++|.+|
T Consensus       644 ~l~sgs~D~tv~~wd~~p~~~g~~~~-----~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l  718 (902)
T 2oaj_A          644 LMVCGTDMGEVITYKILPASGGKFDV-----QLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVL  718 (902)
T ss_dssp             EEEEEETTSEEEEEEEEECGGGCEEE-----EEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEE
T ss_pred             EEEEEecCCcEEEEEEecCCCCcEEE-----EecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEE
Confidence            9999999999999999   6665332     2222221  123566666 66                      455555


Q ss_pred             EEEeCCeEEEEECCCceEEEEeeCCCCcCeEEE---E------EccCCCEEEEEecCCcEEEEeCCCceeEEeecc
Q 001310          952 LLVHETHLAIYEAEELTCLKQWFPISSVPISQA---T------FSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1103)
Q Consensus       952 ~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l---~------fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~ 1018 (1103)
                      +++ +..++||++.++++.... -.|...+.++   .      |++++..|++++.||+|++|++.+++.+..+..
T Consensus       719 ~~~-~~~ir~~~~~~~k~~~k~-~~~~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~  792 (902)
T 2oaj_A          719 ITG-FDDIRLITLGKSKSTHKG-FKYPLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI  792 (902)
T ss_dssp             EEC-SSEEEEECTTCCCEEEEE-CSSCEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEe-ccceEEEeCccccceeeE-cccceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence            554 889999999999998875 4555666666   5      789999999999999999999999999988773

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=100.00  E-value=1.5e-57  Score=554.56  Aligned_cols=554  Identities=11%  Similarity=0.111  Sum_probs=469.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC----CccccceEecccccc-EEEEEEec--CCCceEEEEEcCC
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG----SDARQQLEIDAHVGN-VNDLAFSA--PCKQISVITCGDD  464 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~----~~~~~~~~l~~h~~~-v~~~~~s~--d~~~~~l~s~~~d  464 (1103)
                      ...|.+.|.+++|||||++||+++ ++.|++||+.++    +...   .+.+|... |.+++|+|  +++  +|++++.|
T Consensus        14 ~~~~~~~v~~~~~spdg~~l~~~~-~~~v~v~~~~~~~~~~~~~~---~~~~h~~~~v~~~~~sp~~~~~--~l~s~~~d   87 (615)
T 1pgu_A           14 PSTQRNFTTHLSYDPTTNAIAYPC-GKSAFVRCLDDGDSKVPPVV---QFTGHGSSVVTTVKFSPIKGSQ--YLCSGDES   87 (615)
T ss_dssp             CCCCTTCCCCCEEETTTTEEEEEE-TTEEEEEECCSSCCSSCSEE---EECTTTTSCEEEEEECSSTTCC--EEEEEETT
T ss_pred             CCCccCceeEEEECCCCCEEEEec-CCeEEEEECCCCCCccccce---EEecCCCceEEEEEECcCCCCC--EEEEecCC
Confidence            346899999999999999999998 789999999987    4443   78899999 99999999  999  89999999


Q ss_pred             CceEEEeCCCC--------ceeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCeeEEecCCCccE
Q 001310          465 KTIKVWDAVTG--------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGC  532 (1103)
Q Consensus       465 ~~i~iwd~~~~--------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i  532 (1103)
                      |.|++||+.++        +.+..+..|...|.+++|++  ++.+|++++.+    +.|++||  ..+....+..+...|
T Consensus        88 g~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v  163 (615)
T 1pgu_A           88 GKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF--EGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRI  163 (615)
T ss_dssp             SEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT--TSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCE
T ss_pred             CEEEEEeCCCCcccccccccccchhhcccccEEEEEEeC--CCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccE
Confidence            99999999855        67788899999999999964  77899999988    6888886  667778888999999


Q ss_pred             EEEEEccCCC-EEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCC---ceEEEEEcCC-CCEEEEEeCCCcEEEEEC
Q 001310          533 TRMAYSANGR-RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVVHFDTA-KDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       533 ~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~~~~~~-~~~l~~~~~dg~i~iwd~  607 (1103)
                      .+++|+|+++ .+++++.    ++.|++||..+++.+..+.+|.   .   .|.+++|+|+ ++++++++.||.|++||+
T Consensus       164 ~~~~~~~~~~~~l~~~~~----d~~v~vwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~  236 (615)
T 1pgu_A          164 NACHLKQSRPMRSMTVGD----DGSVVFYQGPPFKFSASDRTHH---KQGSFVRDVEFSPDSGEFVITVGSDRKISCFDG  236 (615)
T ss_dssp             EEEEECSSSSCEEEEEET----TTEEEEEETTTBEEEEEECSSS---CTTCCEEEEEECSTTCCEEEEEETTCCEEEEET
T ss_pred             EEEEECCCCCcEEEEEeC----CCcEEEEeCCCcceeeeecccC---CCCceEEEEEECCCCCCEEEEEeCCCeEEEEEC
Confidence            9999999998 6888765    6679999999999999999887   6   8999999999 999999999999999999


Q ss_pred             CCCeeEEEE-c---CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccc----cceeeeEEecCCcee
Q 001310          608 NKVQLLTTI-D---AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLS----DNLRKLSVNPISTVT  679 (1103)
Q Consensus       608 ~~~~~~~~~-~---~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~----~~i~~~~~~~~~~~~  679 (1103)
                      .+++.+..+ .   .+  ...|.+++|+ +++++++++.|+.|++||+.+++.+..+..+.    ..+.++.+       
T Consensus       237 ~~~~~~~~~~~~~~~~--~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~-------  306 (615)
T 1pgu_A          237 KSGEFLKYIEDDQEPV--QGGIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVA-------  306 (615)
T ss_dssp             TTCCEEEECCBTTBCC--CSCEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEE-------
T ss_pred             CCCCEeEEeccccccc--CCceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeEEEe-------
Confidence            999999888 3   34  4568999999 99999999999999999999998887776653    33333333       


Q ss_pred             eeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEE
Q 001310          680 GAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL  759 (1103)
Q Consensus       680 ~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~  759 (1103)
                                      +++..+++++.|+.+++|++.......      ...+|...|.+++| |+   +++++.||.++
T Consensus       307 ----------------~~~~~l~~~~~~g~i~~~d~~~~~~~~------~~~~~~~~v~~~~~-~~---l~~~~~dg~i~  360 (615)
T 1pgu_A          307 ----------------TGNGRIISLSLDGTLNFYELGHDEVLK------TISGHNKGITALTV-NP---LISGSYDGRIM  360 (615)
T ss_dssp             ----------------EETTEEEEEETTSCEEEEETTEEEEEE------EECCCSSCEEEEET-TT---TEEEETTSCEE
T ss_pred             ----------------CCCCeEEEEECCCCEEEEECCCCcEEE------EEeCCCCCEEEEEe-cC---cEEECCCCeEE
Confidence                            367889999999999999987532211      11358899999999 88   99999999999


Q ss_pred             EeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEE
Q 001310          760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILT  838 (1103)
Q Consensus       760 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~  838 (1103)
                      +|++..                         +.      .+|...|.++++ +++..+++++ |+.+++||+.+++... 
T Consensus       361 ~w~~~~-------------------------~~------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-  407 (615)
T 1pgu_A          361 EWSSSS-------------------------MH------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-  407 (615)
T ss_dssp             ETTTTE-------------------------EE------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-
T ss_pred             EEEchh-------------------------hc------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-
Confidence            998540                         11      148899999999 5556666665 8999999998765433 


Q ss_pred             ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCC
Q 001310          839 IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDG  917 (1103)
Q Consensus       839 ~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~  917 (1103)
                            .+.+++++| ++.+++++ .++.+.+|++.+++.+..+. |...+.+++|+  +++|++++. |+.|++||+.+
T Consensus       408 ------~~~~~~~s~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~  476 (615)
T 1pgu_A          408 ------QPKVASANN-DGFTAVLT-NDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSD  476 (615)
T ss_dssp             ------CEEEEEECS-SSEEEEEE-TTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTE
T ss_pred             ------CceEEEEcC-CCCEEEEe-CCCceEEEeccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCC
Confidence                  678999999 88888877 88999999999999888887 88999999999  899999999 99999999998


Q ss_pred             CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEcc--------
Q 001310          918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSC--------  988 (1103)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~--------  988 (1103)
                      ++...    ....+|..   .|.+++|+|+|++|+++ .|+.|++||+.+++.+..+...|...|++++|+|        
T Consensus       477 ~~~~~----~~~~~~~~---~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~~  549 (615)
T 1pgu_A          477 LEVSF----DLKTPLRA---KPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEE  549 (615)
T ss_dssp             EEEEE----ECSSCCSS---CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEEEECCCC------
T ss_pred             ccccc----cccCCccC---ceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcceeEeecCCCCceeEEEEcCcccccccc
Confidence            65321    33444443   89999999999999996 7899999999999999874444999999999999        


Q ss_pred             --CCCEEEEEecCCcEEEEeCCCc-eeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCc
Q 001310          989 --DCRMVFTSFVDGTLSIHEASNL-EVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGE 1065 (1103)
Q Consensus       989 --dg~~l~t~~~dg~v~vWd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~ 1065 (1103)
                        |+++|++++.||+|++||+.++ +.+..+.                   +|...|.  +++|+|+ +. |++++.||.
T Consensus       550 ~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~-------------------~h~~~v~--~l~~s~~-~~-l~s~~~d~~  606 (615)
T 1pgu_A          550 EIEEDLVATGSLDTNIFIYSVKRPMKIIKALN-------------------AHKDGVN--NLLWETP-ST-LVSSGADAC  606 (615)
T ss_dssp             CCSCCEEEEEETTSCEEEEESSCTTCCEEETT-------------------SSTTCEE--EEEEEET-TE-EEEEETTSC
T ss_pred             ccCCCEEEEEcCCCcEEEEECCCCceechhhh-------------------cCccceE--EEEEcCC-CC-eEEecCCce
Confidence              9999999999999999999988 5555554                   5777786  5677787 67 999999999


Q ss_pred             EEEEccC
Q 001310         1066 VYVIEPN 1072 (1103)
Q Consensus      1066 v~vw~~~ 1072 (1103)
                      |++|++.
T Consensus       607 v~iw~~~  613 (615)
T 1pgu_A          607 IKRWNVV  613 (615)
T ss_dssp             EEEEEEC
T ss_pred             EEEEeee
Confidence            9999984

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=100.00  E-value=5.4e-56  Score=553.81  Aligned_cols=596  Identities=9%  Similarity=0.035  Sum_probs=437.2

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      ..+|...|++++|+||+++||+|+.||+|+||+..+++...    ...|...|.+++|+| |+  +|++++.|++|++||
T Consensus        13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd   85 (902)
T 2oaj_A           13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS   85 (902)
T ss_dssp             EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred             ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence            45799999999999999999999999999999988765332    235788999999999 77  799999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee-----------EEecCCCccEEEEEEccC
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-----------VDYDAPGLGCTRMAYSAN  540 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-----------~~~~~~~~~i~~~~~s~d  540 (1103)
                      +.+++++..+. |...|++++|++  ++.++++|+.||.|++||+++....           .....|...|.+++|+|+
T Consensus        86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~  162 (902)
T 2oaj_A           86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR  162 (902)
T ss_dssp             TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred             CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence            99999998886 778999999965  6789999999999999999887653           123457789999999996


Q ss_pred             C-CEEEEEecCCCCceeEEEEeCCCCeeEEEEecc---------------cccCCceEEEEEcCCCCEEEEEeCCCcEEE
Q 001310          541 G-RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL---------------QLQHNSVSVVHFDTAKDQILAAGDDHVIKI  604 (1103)
Q Consensus       541 g-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~---------------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i  604 (1103)
                      + ..+++++.    ++.| +||+++++.++.+..+               ..|...|.+++|+|++++|++++.||+|++
T Consensus       163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l  237 (902)
T 2oaj_A          163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF  237 (902)
T ss_dssp             EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred             CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence            4 67777654    6679 9999999999888766               122367999999999999999999999999


Q ss_pred             EECCCCeeEEEEcC-----CC-----------CCCCCceEEEec----CC-CEEEEEECC-----CeEEEEEcCC-----
Q 001310          605 WDMNKVQLLTTIDA-----GG-----------GLPENPRICFNK----NG-TLLAVIANE-----NRIKILETPE-----  653 (1103)
Q Consensus       605 wd~~~~~~~~~~~~-----~~-----------~~~~v~~v~~s~----~g-~~l~~~~~d-----g~i~iw~~~~-----  653 (1103)
                      ||+.+++++.....     +.           +...|.+++|++    ++ .++++|+.+     +.+.+|++..     
T Consensus       238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~  317 (902)
T 2oaj_A          238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYS  317 (902)
T ss_dssp             EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGG
T ss_pred             EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCCcc
Confidence            99999988764221     21           123588999964    43 567777665     3788888431     


Q ss_pred             -------------CCeeEecc-ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccC
Q 001310          654 -------------SNSVDAAG-VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1103)
Q Consensus       654 -------------~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  719 (1103)
                                   .+....+. .+...+..+.+.+.......+            ..++..+++++.|+.+++|++..+.
T Consensus       318 ~~s~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~sp~~~g------------~~d~~~l~~~s~dg~l~~~~~~~g~  385 (902)
T 2oaj_A          318 ITSYEGMKNYYANPKQMKIFPLPTNVPIVNILPIPRQSPYFAG------------CHNPGLILLILGNGEIETMLYPSGI  385 (902)
T ss_dssp             GCCHHHHHHHHHSCSEEEEECCSSSSCEEEEEECCSSCSHHHH------------TBSCSEEEEEETTSCEEEEETTTCC
T ss_pred             ccchhhhhhhhcCccceEEEecCCCCceEEEEECCCCCCCcCC------------CCCceeEEEEcCCCcEEEEECCCCC
Confidence                         11122221 233444444443311000000            1345578888899999999985332


Q ss_pred             Cccc-eeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCC
Q 001310          720 PSEC-QSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1103)
Q Consensus       720 ~~~~-~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1103)
                      .... .........|...|.+++|++...           .+|+.....                  . +...    ...
T Consensus       386 ~~~~~~~~~~~l~~~~~~v~~~~~s~~~~-----------~~w~~~~~~------------------~-~~~~----~~l  431 (902)
T 2oaj_A          386 FTDKASLFPQNLSWLRPLATTSMAASVPN-----------KLWLGALSA------------------A-QNKD----YLL  431 (902)
T ss_dssp             EECCGGGSCGGGTTBTTBEEEEEEEEEEH-----------HHHHHHHHT------------------T-BCCC----CSC
T ss_pred             cccccccCCCcccccCCCeeEEEEEEcCH-----------HHHHHHHhc------------------c-cCCC----Ccc
Confidence            1110 000111233567888888865322           234321000                  0 0000    011


Q ss_pred             CCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceee----EE--ec-----CCCCCeeEEEEcCCCCCEEEEEeCCC
Q 001310          799 SNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTI----LT--IM-----PPSPTATSLAFNPHDNNVIAIGMDDS  866 (1103)
Q Consensus       799 ~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~d~~~lasg~~dg  866 (1103)
                      .+|...+.+++|+||+++|++++ |++|++||+.++...    ..  +.     +|...|++++|+| |+++||+|+.||
T Consensus       432 ~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsgs~Dg  510 (902)
T 2oaj_A          432 KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVSIETG  510 (902)
T ss_dssp             CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEEETTS
T ss_pred             cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEEecCc
Confidence            25777888899999999999998 899999999877421    11  11     6888999999999 999999999999


Q ss_pred             eEEEEEcCCc---------------------------------------------eeEEEeccCCCCEEEEEEccCCCEE
Q 001310          867 TILIYNARSS---------------------------------------------EVISKLEGHSKRVTGLVFSDALNIL  901 (1103)
Q Consensus       867 ~v~iwd~~~~---------------------------------------------~~~~~l~~h~~~V~~l~~s~dg~~l  901 (1103)
                      +|+||++.++                                             +++..+.+|.+.|++|+||||| +|
T Consensus       511 tV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~l  589 (902)
T 2oaj_A          511 DVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FV  589 (902)
T ss_dssp             CEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EE
T ss_pred             EEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EE
Confidence            9999999866                                             2467888999999999999999 99


Q ss_pred             EEEeCCCeEEEEEcCCCceeeeeeeecCC-CcccCCCCceEEEEc-----CCC---CEEEEE-eCCeEEEEEC---CCce
Q 001310          902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPD-GVMTLAPSETHIQFH-----KDQ---TRFLLV-HETHLAIYEA---EELT  968 (1103)
Q Consensus       902 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~-~~~~~~~~v~~l~fs-----~dg---~~l~~~-~d~~v~iwd~---~~~~  968 (1103)
                      |+|+.|++|++||+.++.......+.... +|..   .|++++||     |||   ++|+++ .|++|++||+   .+|+
T Consensus       590 Asgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~---~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~  666 (902)
T 2oaj_A          590 GIAYAAGSLMLIDRRGPAIIYMENIREISGAQSA---CVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGK  666 (902)
T ss_dssp             EEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCC---CEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGC
T ss_pred             EEEeCCCcEEEEECCCCeEEEEeehhHhcccccc---ceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCc
Confidence            99999999999999886654322223343 5554   89999999     886   888885 8899999999   7888


Q ss_pred             EEEEeeCCC-----CcCeEEEE-Ec----------------------cCCCEEEEEecCCcEEEEeCCCceeEEeecccc
Q 001310          969 CLKQWFPIS-----SVPISQAT-FS----------------------CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTA 1020 (1103)
Q Consensus       969 ~~~~~~~~h-----~~~v~~l~-fs----------------------~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~ 1020 (1103)
                      +...+ .+|     ..+|.+++ |+                      +++..|+++  +..|+||++.+++......   
T Consensus       667 ~~~~~-~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~---  740 (902)
T 2oaj_A          667 FDVQL-MDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGF---  740 (902)
T ss_dssp             EEEEE-EEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEEC---
T ss_pred             EEEEe-cCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEc---
Confidence            87763 344     57788777 76                      455555543  7789999999988775553   


Q ss_pred             ccCCCCCCCceeeEeeccCCceeeE-EEE------ECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310         1021 YLRPTTSHDKILCFCYCSCLHVYPH-AIA------AHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus      1021 ~~~~~~~~~~~~~~~~~~~~~v~~~-~~~------~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
                                      +|...+..+ .+.      ++++ +..|++++.||+|++|+++..+.
T Consensus       741 ----------------~~~~~~~~v~~~~~~~~~~~~~~-~~~l~~~~~~g~i~~~s~p~l~~  786 (902)
T 2oaj_A          741 ----------------KYPLAATGLSYISTVEKNNDRKN-LTVIITLEINGHLRVFTIPDFKE  786 (902)
T ss_dssp             ----------------SSCEEEEEEEEEEEECSSSCEEE-EEEEEEEETTSEEEEEETTTCCE
T ss_pred             ----------------ccceeeeEEEEEEeccccccccC-ceEEEEEeCCCcEEEEECcchHH
Confidence                            122112222 123      5666 78999999999999999966665

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=8.6e-48  Score=484.69  Aligned_cols=558  Identities=14%  Similarity=0.177  Sum_probs=429.7

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ...+++.+|++.|.+++|||||+ +||+|+.||.|+|||+.+++.+..                   +.+|...|.+++|
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~~-------------------~~~~~~~v~~~~~   63 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVRS-------------------IQVTETPVRAGKF   63 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEEE-------------------EecCCCcEEEEEE
Confidence            35578899999999999999998 689999999999999999987765                   6679999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeec
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  483 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~  483 (1103)
                      +|++++||+++.||.|++||+.+++.+.   .+.+|...|++++|+|+++  .|++++.||+|++||+.++ .....+.+
T Consensus        64 s~~~~~l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~  138 (814)
T 3mkq_A           64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG  138 (814)
T ss_dssp             EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEEC
T ss_pred             eCCCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcC
Confidence            9999999999999999999999987555   6789999999999999999  7999999999999999987 67788899


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC-ccEEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW  560 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw  560 (1103)
                      |...|.+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+|  ++.++++++.    ++.|++|
T Consensus       139 ~~~~v~~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~  213 (814)
T 3mkq_A          139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW  213 (814)
T ss_dssp             CSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEE
T ss_pred             CCCcEEEEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEE
Confidence            9999999999752 55799999999999999998888777666554 7899999999  9999999875    6679999


Q ss_pred             eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC--EEE
Q 001310          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA  638 (1103)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~--~l~  638 (1103)
                      |..+++.+..+.+|.   ..|.+++|+|+++++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|++.  +++
T Consensus       214 d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~  288 (814)
T 3mkq_A          214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA  288 (814)
T ss_dssp             ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSS--SSEEEEEECTTCGGGEEE
T ss_pred             ECCCCcEEEEEcCCC---CCEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCC--CcEEEEEEccCCCceEEE
Confidence            999999999998887   899999999999999999999999999999999999887663  4689999999987  455


Q ss_pred             EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc--------
Q 001310          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS--------  710 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i--------  710 (1103)
                      +++ ++.+.+|++......            +.++                      |+|..+++++.+...        
T Consensus       289 ~~~-~~~~~~~~~~~~~~~------------~~~~----------------------~~g~~~~~~~~~~~~~~~~~~~~  333 (814)
T 3mkq_A          289 SGF-DNGFTVLSLGNDEPT------------LSLD----------------------PVGKLVWSGGKNAAASDIFTAVI  333 (814)
T ss_dssp             EEE-TTEEEEEECSCCSCC------------EEEC----------------------SSSEEEEECCTTSCTTCEEEEEC
T ss_pred             EEe-CCCEEEEEcCCCCce------------eEEC----------------------CCCCEEEECcccccceeeeeeec
Confidence            555 567889987655322            2333                      444444444333221        


Q ss_pred             -ccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCC
Q 001310          711 -EVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP  789 (1103)
Q Consensus       711 -~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1103)
                       ..|++.............  ..+...+.+++|+|+|+.+++++ +|.+.+|++.....                     
T Consensus       334 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~~~---------------------  389 (814)
T 3mkq_A          334 RGNEEVEQDEPLSLQTKEL--GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAWRN---------------------  389 (814)
T ss_dssp             CSCCCCCSSSCBCCCCEEE--CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTTEE---------------------
T ss_pred             ccccccccCccceeeeecC--CCCccCCceeEECCCCCEEEEec-CCEEEEEECccccc---------------------
Confidence             123332222221111111  22556789999999999888887 89999998643210                     


Q ss_pred             ceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCC---CEEEEEeCC
Q 001310          790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN---NVIAIGMDD  865 (1103)
Q Consensus       790 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~---~~lasg~~d  865 (1103)
                                .+...+.+++|+||++++++++ ++.|++|+.        +.+|...+.+++|+| ++   .+|++++.|
T Consensus       390 ----------~~~~~i~~~~~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d  450 (814)
T 3mkq_A          390 ----------KAFGKCQDFVWGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSD  450 (814)
T ss_dssp             ----------EEEEECSEEEECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEET
T ss_pred             ----------cCCCceEEEEEeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecC
Confidence                      1345678999999999999997 699999963        344677889999999 77   588889999


Q ss_pred             CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEE------eCCCeEEEEEcCC---------------Cceeeee
Q 001310          866 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSS------GGDAQIFVWDVDG---------------WGIQTCR  924 (1103)
Q Consensus       866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~------s~dg~I~iwd~~~---------------~~~~~~~  924 (1103)
                      +.|++||+.+++.+..+..|..   .++|+|||++|+++      +.++.+.+|--..               +......
T Consensus       451 ~~v~~~d~~~~~~~~~~~~~~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (814)
T 3mkq_A          451 GFVYFFDWDNGTLVRRIDVNAK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFD  527 (814)
T ss_dssp             TEEEEECTTTCCEEEEESSCEE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEE
T ss_pred             CEEEEEECCcCcEEEEEecCCC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhhee
Confidence            9999999999999999988765   89999999999999      6666555554210               0000001


Q ss_pred             eeecCCCcccCCCCceEEEEcCCCCEEEEEe-CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEE
Q 001310          925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003 (1103)
Q Consensus       925 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~-d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~ 1003 (1103)
                      .+....      ..+.+..|.  +..++... .+.+..+.  .++...  ......++..+.|.+++..++....++.++
T Consensus       528 ~~~~~~------~~i~s~~w~--~~~~i~~t~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~  595 (814)
T 3mkq_A          528 VLYELS------ESITSGKWV--GDVFIFTTATNRLNYFV--GGKTYN--LAHYTKEMYLLGYLARDNKVYLADREVHVY  595 (814)
T ss_dssp             EEEEEC------SCCSEEEEE--TTEEEEECTTSEEEEEE--TTEEEE--EEECSSCCEEEEEEGGGTEEEEECTTCCEE
T ss_pred             eeeEec------cEEEeeEEe--CCEEEEEcCCCeEEEEe--CCeeEE--EEECCccEEEEEEEecCCEEEEEcCCCCEE
Confidence            111101      135566664  33333332 34444432  222221  112355677777889999999999999999


Q ss_pred             EEeCCCc
Q 001310         1004 IHEASNL 1010 (1103)
Q Consensus      1004 vWd~~~~ 1010 (1103)
                      +|++...
T Consensus       596 ~~~l~~~  602 (814)
T 3mkq_A          596 GYEISLE  602 (814)
T ss_dssp             EEECCHH
T ss_pred             EEEECcH
Confidence            9998643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=100.00  E-value=3.4e-46  Score=470.16  Aligned_cols=479  Identities=15%  Similarity=0.185  Sum_probs=391.3

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.+.|.+++|||||++||+++.||.|+|||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.||.|++||
T Consensus         9 ~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (814)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             eecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence            67899999999999999999999999999999999986555   6779999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC-CeeEEecCCCccEEEEEEcc-CCCEEEEEec
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1103)
                      +.+++.+..+.+|...|.+++|++  ++.+|++++.||.|++||+++. .....+..+...+.+++|+| +++.+++++.
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~  161 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEET
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeC
Confidence            999999999999999999999965  6679999999999999999987 55567788899999999999 8889999876


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                          ++.|++||+.+++....+..+.  ...+.+++|+|  +++++++++.||.|++||+.+++.+..+..+.  ..|.+
T Consensus       162 ----dg~v~vwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~--~~v~~  233 (814)
T 3mkq_A          162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF  233 (814)
T ss_dssp             ----TSEEEEEETTCSSCSEEEECCC--TTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred             ----CCeEEEEECCCCcceeEEecCC--CCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCC--CCEEE
Confidence                6679999999888877777654  47899999999  99999999999999999999999999888664  46899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc-eeecc
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE-ISVEA  706 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~s~~~  706 (1103)
                      ++|+|+++++++++.||.|++|+..+++....+..+...+.+++++                      |++..+ ++.+.
T Consensus       234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~v~~~~~~----------------------~~~~~~~~~~~~  291 (814)
T 3mkq_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATH----------------------PTGRKNYIASGF  291 (814)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSSSEEEEEEC----------------------TTCGGGEEEEEE
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCCcEEEEEEc----------------------cCCCceEEEEEe
Confidence            9999999999999999999999999999999999999999999987                      455433 55556


Q ss_pred             ccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceE-EEeecCCCccccccccccccCCeeecC
Q 001310          707 ENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVH-LMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1103)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i-~vw~~~~~~~~~~~~~~~~~~~~~~~~  785 (1103)
                      ++.+.+|++..                  ....+.++|+|+.+++++.+... .++...              ....|+.
T Consensus       292 ~~~~~~~~~~~------------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~--------------~~~~~~~  339 (814)
T 3mkq_A          292 DNGFTVLSLGN------------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAV--------------IRGNEEV  339 (814)
T ss_dssp             TTEEEEEECSC------------------CSCCEEECSSSEEEEECCTTSCTTCEEEEE--------------CCSCCCC
T ss_pred             CCCEEEEEcCC------------------CCceeEECCCCCEEEECcccccceeeeeee--------------ccccccc
Confidence            67788887652                  12346788999988887665321 010000              0001222


Q ss_pred             CCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001310          786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1103)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1103)
                      ..+............+...+.+++|+|+|+++++++++.+.+|++.......     .+.+.+++|+| +++++|+++.+
T Consensus       340 ~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~i~~~~~~~~~~-----~~~i~~~~~sp-dg~~la~~~~~  413 (814)
T 3mkq_A          340 EQDEPLSLQTKELGSVDVFPQSLAHSPNGRFVTVVGDGEYVIYTALAWRNKA-----FGKCQDFVWGP-DSNSYALIDET  413 (814)
T ss_dssp             CSSSCBCCCCEEECCCSSCCSEEEECTTSSEEEEEETTEEEEEETTTTEEEE-----EEECSEEEECT-TSSCEEEECTT
T ss_pred             ccCccceeeeecCCCCccCCceeEECCCCCEEEEecCCEEEEEECccccccC-----CCceEEEEEeC-CCCeEEEEeCC
Confidence            2222221111111236678899999999999999999999999987554332     35688999999 89999999999


Q ss_pred             CeEEEEEcCCceeEEEeccCCCCEEEEEEccCC---CEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEE
Q 001310          866 STILIYNARSSEVISKLEGHSKRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI  942 (1103)
Q Consensus       866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg---~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l  942 (1103)
                      |.|++|+        .+.+|...+.+++|+|||   ++|++++.|+.|++||+.+++..     .....+      ...+
T Consensus       414 g~v~l~~--------~~~~~~~~v~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~-----~~~~~~------~~~v  474 (814)
T 3mkq_A          414 GQIKYYK--------NFKEVTSWSVPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLV-----RRIDVN------AKDV  474 (814)
T ss_dssp             CCEEEEE--------TTEECTTCCCCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEE-----EEESSC------EEEE
T ss_pred             CcEEEEE--------CCCCccceEEcCCcCccceecceEEEEecCCEEEEEECCcCcEE-----EEEecC------CCEE
Confidence            9999995        345688889999999998   68999999999999999987633     333333      2389


Q ss_pred             EEcCCCCEEEEE------eCCeEEEEEC
Q 001310          943 QFHKDQTRFLLV------HETHLAIYEA  964 (1103)
Q Consensus       943 ~fs~dg~~l~~~------~d~~v~iwd~  964 (1103)
                      +|||||++|+++      .++.+++|..
T Consensus       475 ~~s~dg~~la~~~~~~~~~~~~~~~~~~  502 (814)
T 3mkq_A          475 IWSDNGELVMIVNTNSNGDEASGYTLLF  502 (814)
T ss_dssp             EECTTSSEEEEEECCCSSCSCSEEEEEE
T ss_pred             EEcCCCCEEEEEEcCcccCCceEEEEEe
Confidence            999999999997      6666666643

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.9e-45  Score=420.32  Aligned_cols=288  Identities=22%  Similarity=0.368  Sum_probs=267.2

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      ..|.+|.++|++++|+|+++ ++++|+.|++|+|||+.+++....                   +.+|...|.+++|+|+
T Consensus       102 ~~l~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~~-------------------l~~h~~~V~~v~~~~~  161 (410)
T 1vyh_C          102 YALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDHS  161 (410)
T ss_dssp             CEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECTT
T ss_pred             EeecccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EeccCCcEEEEEEcCC
Confidence            45789999999999999998 799999999999999999987765                   7789999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCc
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      |++||+|+.|++|++||+.+++++.   .+.+|...|.+++|+|+++  .+++|+.|++|++||+.++.++.++.+|...
T Consensus       162 ~~~l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~  236 (410)
T 1vyh_C          162 GKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREW  236 (410)
T ss_dssp             SSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSC
T ss_pred             CCEEEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCcc
Confidence            9999999999999999999887655   6789999999999999999  8999999999999999999999999999999


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccC--------------------CCEEEEE
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN--------------------GRRLFSC  547 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d--------------------g~~l~~~  547 (1103)
                      |.+++++  +++.++++++.||+|++||+.+......+..|...|.+++|+|+                    |.+|+++
T Consensus       237 v~~~~~~--~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sg  314 (410)
T 1vyh_C          237 VRMVRPN--QDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSG  314 (410)
T ss_dssp             EEEEEEC--TTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEE
T ss_pred             EEEEEEC--CCCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEE
Confidence            9999885  47789999999999999999999999999999999999999996                    6789998


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      +.    ++.|++||+.++..+..+.+|.   ..|.+++|+|++++|++|+.||+|++||+.+++++..+..|.  ..|.+
T Consensus       315 s~----D~~i~iwd~~~~~~~~~~~~h~---~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~--~~v~~  385 (410)
T 1vyh_C          315 SR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVTS  385 (410)
T ss_dssp             ET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEEE
T ss_pred             eC----CCeEEEEECCCCceEEEEECCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCC--CcEEE
Confidence            76    6679999999999999999988   899999999999999999999999999999999999998764  46999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEc
Q 001310          628 ICFNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      ++|+|++.+|++|+.|+.|++|+.
T Consensus       386 l~~~~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          386 LDFHKTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             EEECSSSSCEEEEETTSEEEEEC-
T ss_pred             EEEcCCCCEEEEEeCCCcEEEEeC
Confidence            999999999999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=9e-40  Score=363.60  Aligned_cols=296  Identities=19%  Similarity=0.269  Sum_probs=266.5

Q ss_pred             ccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      +....++|.+|.+.|++++|+|||+ +|++|+.||+|+|||+.+++.+..                   +..|...|.++
T Consensus        44 ~~~~~~~l~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~~  103 (340)
T 1got_B           44 QMRTRRTLRGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTC  103 (340)
T ss_dssp             CCCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEEE-------------------EECSSSCEEEE
T ss_pred             cchhheeecCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcceE-------------------eecCCccEEEE
Confidence            3456789999999999999999998 799999999999999999987765                   55799999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCc-cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  481 (1103)
                      +|+|+|++||+|+.|+.|++|++.+++. ......+.+|...|.++.|++++.   +++++.|++|++||+.+++++..+
T Consensus       104 ~~s~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~  180 (340)
T 1got_B          104 AYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTF  180 (340)
T ss_dssp             EECTTSSEEEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEE
T ss_pred             EECCCCCEEEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEE
Confidence            9999999999999999999999987642 233446789999999999999875   889999999999999999999999


Q ss_pred             ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310          482 EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1103)
                      .+|...|.+++|++  ++.++++++.||.|++||+.++.....+..|...|.+++|+|++++|++++.    ++.|++||
T Consensus       181 ~~h~~~v~~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd  254 (340)
T 1got_B          181 TGHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFD  254 (340)
T ss_dssp             CCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred             cCCCCceEEEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEE
Confidence            99999999999965  6689999999999999999999999999999999999999999999999986    56699999


Q ss_pred             CCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310          562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       562 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      +.+++.+..+.... ....|.+++|+|+++++++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|+|++|++++
T Consensus       255 ~~~~~~~~~~~~~~-~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s  331 (340)
T 1got_B          255 LRADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGS  331 (340)
T ss_dssp             TTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEE
T ss_pred             CCCCcEEEEEccCC-cccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEc
Confidence            99998877765322 23579999999999999999999999999999999999888764  4699999999999999999


Q ss_pred             CCCeEEEEE
Q 001310          642 NENRIKILE  650 (1103)
Q Consensus       642 ~dg~i~iw~  650 (1103)
                      .|+.|++||
T Consensus       332 ~D~~i~iWd  340 (340)
T 1got_B          332 WDSFLKIWN  340 (340)
T ss_dssp             TTSCEEEEC
T ss_pred             CCccEEecC
Confidence            999999996

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-39  Score=363.98  Aligned_cols=299  Identities=17%  Similarity=0.238  Sum_probs=268.9

Q ss_pred             ccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      +....++|.+|.+.|++++|+||++ +||+|+.|++|+|||..+++....                   +..|...|.++
T Consensus        53 ~~~~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~~-------------------~~~~~~~v~~~  112 (354)
T 2pbi_B           53 VMKTRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEHA-------------------VTMPCTWVMAC  112 (354)
T ss_dssp             CCCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEEE-------------------EECSSSCCCEE
T ss_pred             ccEEEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcceE-------------------EecCCCCEEEE
Confidence            3466789999999999999999998 699999999999999999887654                   45688899999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCc---cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      +|+|+|.+||+|+.|+.+++|++.....   ......+.+|...|.+++|+|++.  .|++++.|++|++||+.+++++.
T Consensus       113 ~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~  190 (354)
T 2pbi_B          113 AYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQ  190 (354)
T ss_dssp             EECTTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEE
T ss_pred             EECCCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEE
Confidence            9999999999999999999999875421   223446778999999999999998  79999999999999999999999


Q ss_pred             EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      .+.+|...|.++++++.+++.+|++|+.||.|++||+++++....+..|...|.+++|+|++.+|++++.    ++.|++
T Consensus       191 ~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~l  266 (354)
T 2pbi_B          191 SFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRL  266 (354)
T ss_dssp             EEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEE
T ss_pred             EEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEE
Confidence            9999999999999998878899999999999999999999999999999999999999999999999986    567999


Q ss_pred             EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001310          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1103)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~  639 (1103)
                      ||+++++.+..+..+. ....+.+++|+|++.++++|+.|++|++||+.+++.+..+..|  ...|.+++|+|+|++|++
T Consensus       267 wd~~~~~~~~~~~~~~-~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h--~~~v~~l~~spdg~~l~s  343 (354)
T 2pbi_B          267 YDLRADREVAIYSKES-IIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGH--ENRVSTLRVSPDGTAFCS  343 (354)
T ss_dssp             EETTTTEEEEEECCTT-CCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCC--SSCEEEEEECTTSSCEEE
T ss_pred             EECCCCcEEEEEcCCC-cccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECC--CCcEEEEEECCCCCEEEE
Confidence            9999998877766433 2357899999999999999999999999999999999888766  456999999999999999


Q ss_pred             EECCCeEEEEE
Q 001310          640 IANENRIKILE  650 (1103)
Q Consensus       640 ~~~dg~i~iw~  650 (1103)
                      ++.|++|++|+
T Consensus       344 gs~D~~v~vW~  354 (354)
T 2pbi_B          344 GSWDHTLRVWA  354 (354)
T ss_dssp             EETTSEEEEEC
T ss_pred             EcCCCCEEecC
Confidence            99999999995

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=6.3e-40  Score=360.62  Aligned_cols=295  Identities=15%  Similarity=0.232  Sum_probs=266.2

Q ss_pred             cceeEecccCCcCceEEEecCC----CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPV----QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spd----g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      ..+.+.+.+|.+.|++++|+|+    ++ +|++|+.|++|+|||+.+++....                 ..+.+|...|
T Consensus        22 g~~~~~~~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v   83 (321)
T 3ow8_A           22 GILFKQEQAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGV   83 (321)
T ss_dssp             EEEEEETTSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCE
T ss_pred             hheeeecccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCE
Confidence            3455778899999999999985    44 799999999999999987654321                 1277999999


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      .+++|+|++.++++++.|++|++||+.+++.+.   .+..|...+.+++|+|+++  +|++++.|+.|++||+.+++...
T Consensus        84 ~~~~~~~~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~  158 (321)
T 3ow8_A           84 VSVDISHTLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEY  158 (321)
T ss_dssp             EEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEE
T ss_pred             EEEEECCCCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeE
Confidence            999999999999999999999999999987555   6778889999999999999  89999999999999999999999


Q ss_pred             EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      .+..|...|.+++|+|  ++.+|++++.||.|++||+.+++....+..+..+|.+++|+|++++|++++.    ++.|++
T Consensus       159 ~~~~~~~~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~i  232 (321)
T 3ow8_A          159 SLDTRGKFILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKI  232 (321)
T ss_dssp             EEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEE
T ss_pred             EecCCCceEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEE
Confidence            9999999999999954  7789999999999999999999988899999999999999999999999976    566999


Q ss_pred             EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001310          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1103)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~  639 (1103)
                      ||+.+++....+.+|.   ..|.+++|+|++++|++++.|++|++||+.+++++..+..|  ...|.+++|+|++++|++
T Consensus       233 wd~~~~~~~~~~~~h~---~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h--~~~v~~v~~s~~g~~l~s  307 (321)
T 3ow8_A          233 YDVQHANLAGTLSGHA---SWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDH--QDQVWGVKYNGNGSKIVS  307 (321)
T ss_dssp             EETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECTTSSEEEE
T ss_pred             EECCCcceeEEEcCCC---CceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCC--CCcEEEEEECCCCCEEEE
Confidence            9999999999999888   89999999999999999999999999999999999998866  346999999999999999


Q ss_pred             EECCCeEEEEEcC
Q 001310          640 IANENRIKILETP  652 (1103)
Q Consensus       640 ~~~dg~i~iw~~~  652 (1103)
                      ++.|+.|++||.+
T Consensus       308 ~~~d~~i~vwd~p  320 (321)
T 3ow8_A          308 VGDDQEIHIYDCP  320 (321)
T ss_dssp             EETTCCEEEEECC
T ss_pred             EeCCCeEEEEeCC
Confidence            9999999999964

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2.2e-39  Score=354.21  Aligned_cols=293  Identities=18%  Similarity=0.310  Sum_probs=258.1

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ...++|.+|.+.|++++|||||+ +|++|+.||+|+|||++++..+..                   +.+|...|.+++|
T Consensus         4 ~~~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~~-------------------~~~~~~~v~~~~~   63 (304)
T 2ynn_A            4 DIKKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVRS-------------------IQVTETPVRAGKF   63 (304)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             eeEEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeEE-------------------eeccCCcEEEEEE
Confidence            45678999999999999999998 689999999999999999987765                   6679999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeec
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEG  483 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~  483 (1103)
                      +|++++|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++|+.|++|++||+.++ .....+.+
T Consensus        64 ~~~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~  138 (304)
T 2ynn_A           64 IARKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEG  138 (304)
T ss_dssp             EGGGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECC
T ss_pred             eCCCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcc
Confidence            9999999999999999999999987655   6889999999999999999  8999999999999999987 45578899


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-CCCccEEEEEEcc--CCCEEEEEecCCCCceeEEEE
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSA--NGRRLFSCGTSKEGESFLVEW  560 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~--dg~~l~~~~~~~~~~~~i~iw  560 (1103)
                      |...|.+++|+|. ++.+|++|+.|++|++||+........+. .+...+..+.|+|  ++.+|++++.    ++.|++|
T Consensus       139 h~~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iW  213 (304)
T 2ynn_A          139 HEHFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIW  213 (304)
T ss_dssp             CCSCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEE
T ss_pred             cCCcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEE
Confidence            9999999999763 45799999999999999998877666554 4556888899987  7789999986    6679999


Q ss_pred             eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC--EEE
Q 001310          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT--LLA  638 (1103)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~--~l~  638 (1103)
                      |+.+++.+..+.+|.   ..|.+++|+|+++.|++|+.||+|++||..+++.+..+..+.  ..+.+++|+|++.  +++
T Consensus       214 d~~~~~~~~~~~~h~---~~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~a  288 (304)
T 2ynn_A          214 DYQTKSCVATLEGHM---SNVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIA  288 (304)
T ss_dssp             ETTTTEEEEEEECCS---SCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEE
T ss_pred             eCCCCccceeeCCCC---CCEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEE
Confidence            999999999999988   899999999999999999999999999999999999987653  4588999999875  577


Q ss_pred             EEECCCeEEEEEcCC
Q 001310          639 VIANENRIKILETPE  653 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~  653 (1103)
                      +|+.+| +.+|++..
T Consensus       289 sg~~~g-~~~~~~~~  302 (304)
T 2ynn_A          289 SGFDNG-FTVLSLGN  302 (304)
T ss_dssp             EEETTE-EEEEECC-
T ss_pred             EecCCc-eEEEEecc
Confidence            777655 77777654

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=9.2e-39  Score=351.68  Aligned_cols=301  Identities=19%  Similarity=0.238  Sum_probs=259.2

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      .+..+|.+|++.|++++|+|++..+|++|+.|++|++||+.+.......              ....+.+|...|.+++|
T Consensus         8 ~l~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~   73 (319)
T 3frx_A            8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTL   73 (319)
T ss_dssp             EEEEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEE
T ss_pred             EEEEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEE
Confidence            4567899999999999999977448999999999999998754322110              11227789999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      +|||++|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|++|++||+. ++++..+.+|
T Consensus        74 s~dg~~l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~-~~~~~~~~~h  147 (319)
T 3frx_A           74 TADGAYALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIK-GQCLATLLGH  147 (319)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETT-SCEEEEECCC
T ss_pred             CCCCCEEEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECC-CCeEEEEecc
Confidence            9999999999999999999999987554   6889999999999999999  89999999999999975 6778889999


Q ss_pred             CCceEEEEeeecC----CccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001310          485 GAPVYSLCPHAKE----NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1103)
Q Consensus       485 ~~~v~~~~~~~~~----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1103)
                      ...|.++++.+..    ++..+++++.|+.|++||+...+....+..|...|.+++|+|+|++|++++.    ++.|++|
T Consensus       148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iw  223 (319)
T 3frx_A          148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLW  223 (319)
T ss_dssp             SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEE
T ss_pred             CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEE
Confidence            9999999997643    4568999999999999999998888889999999999999999999999986    6779999


Q ss_pred             eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC------CCCCCceEEEecCC
Q 001310          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG------GLPENPRICFNKNG  634 (1103)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~g  634 (1103)
                      |+.+++.+..+..+    ..|.+++|+|++.++++++. +.+++|++..+..+..+..+.      +...+.+++|+|||
T Consensus       224 d~~~~~~~~~~~~~----~~v~~~~~sp~~~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg  298 (319)
T 3frx_A          224 NLAAKKAMYTLSAQ----DEVFSLAFSPNRYWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADG  298 (319)
T ss_dssp             ETTTTEEEEEEECC----SCEEEEEECSSSSEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTS
T ss_pred             ECCCCcEEEEecCC----CcEEEEEEcCCCCEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCC
Confidence            99999998888764    47999999999999888775 459999999888877765331      12357799999999


Q ss_pred             CEEEEEECCCeEEEEEcCCC
Q 001310          635 TLLAVIANENRIKILETPES  654 (1103)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      ++|++|+.|+.|++|++.++
T Consensus       299 ~~l~sg~~Dg~i~vWd~~t~  318 (319)
T 3frx_A          299 QTLFAGYTDNVIRVWQVMTA  318 (319)
T ss_dssp             SEEEEEETTSCEEEEEEEEC
T ss_pred             CEEEEeecCceEEEEEEeec
Confidence            99999999999999998653

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=1.9e-39  Score=367.02  Aligned_cols=306  Identities=17%  Similarity=0.256  Sum_probs=265.7

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ..+.++|.+|.+.|++++|+|+|+ +|++|+.|++|+|||+.+++....                   +.+|...|.+++
T Consensus        56 ~~~~~~l~gH~~~V~~~~~sp~~~-~l~s~s~D~~v~iWd~~~~~~~~~-------------------~~~h~~~v~~~~  115 (380)
T 3iz6_a           56 LVCCRTLQGHSGKVYSLDWTPEKN-WIVSASQDGRLIVWNALTSQKTHA-------------------IKLHCPWVMECA  115 (380)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSS-CEEEEETTSEEEEEETTTTEEEEE-------------------EECCCTTCCCCE
T ss_pred             eEEeecccccccEEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCccceE-------------------EecCCCCEEEEE
Confidence            457789999999999999999998 699999999999999999987765                   667999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCc----cccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSD----ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~----~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      |+|+|++||+|+.|+.|++||+.+...    ......+.+|.+.|.+++|+|++.. .|++|+.|++|++||+.+++.+.
T Consensus       116 ~s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~  194 (380)
T 3iz6_a          116 FAPNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRIS  194 (380)
T ss_dssp             ECTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEE
T ss_pred             ECCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEE
Confidence            999999999999999999999976421    1223357799999999999998654 69999999999999999999998


Q ss_pred             Ee-----ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          480 SF-----EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       480 ~~-----~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      .+     .+|...|.++++++. ++.++++|+.||+|++||++. ......+..|...|.+++|+|++++|++++.    
T Consensus       195 ~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----  269 (380)
T 3iz6_a          195 IFGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----  269 (380)
T ss_dssp             EECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----
T ss_pred             EeecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----
Confidence            87     679999999998643 567999999999999999984 4667788899999999999999999999986    


Q ss_pred             ceeEEEEeCCCCeeEEEEeccccc----CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC--CCCCCCCce
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA--GGGLPENPR  627 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~  627 (1103)
                      ++.|++||+.+++.+..+..+...    ...+.+++|+|+++++++|+.||.|++||...++.+..+..  ..+...|.+
T Consensus       270 D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~  349 (380)
T 3iz6_a          270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISC  349 (380)
T ss_dssp             SSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCE
T ss_pred             CCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEE
Confidence            667999999999998888765411    13488999999999999999999999999999988877732  234567999


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESN  655 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~  655 (1103)
                      ++|+|+|++|++|+.|++|++|++...+
T Consensus       350 l~~s~dg~~l~sgs~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          350 LGLSSDGSALCTGSWDKNLKIWAFSGHR  377 (380)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred             EEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence            9999999999999999999999988653

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=3.8e-39  Score=360.32  Aligned_cols=319  Identities=16%  Similarity=0.206  Sum_probs=232.7

Q ss_pred             eeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCe
Q 001310          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPR  781 (1103)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~  781 (1103)
                      +.++.+.....|++....+          ..|...|.+++|+|||++|++++.+. +++||               ..++
T Consensus        20 ~~~~g~~~~~~w~~p~~~p----------~~H~~~V~~v~fSpDG~~las~s~d~-~~~wd---------------~~v~   73 (357)
T 4g56_B           20 FQSNGSSKGSAWGRPVTAP----------ACMEVQIGAVRYRRDGALLLAASSLS-SRTWG---------------GSIW   73 (357)
T ss_dssp             ------------------------------CCCSEEEEEEECSSSCEEEEEECSS-SSSCC---------------EEEE
T ss_pred             EecCCCccccccCCCCCCc----------ccccCCEEEEEECCCCCEEEEEcCCC-Ccccc---------------CeEE
Confidence            4444456778888753222          24888999999999999999998853 23443               1234


Q ss_pred             eecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeE----EecCCCCCeeEEEEcCCCCC
Q 001310          782 LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTIL----TIMPPSPTATSLAFNPHDNN  857 (1103)
Q Consensus       782 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~l~~s~~d~~  857 (1103)
                      +|+..++...........+|...|.+++|+|++++++++.||+|++||+.+++...    ...+|...|++++|+| +++
T Consensus        74 ~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~  152 (357)
T 4g56_B           74 VFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGT  152 (357)
T ss_dssp             EESSCC---CGGGCSEEEECSSCEEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSS
T ss_pred             EEECCCCCcceeEecccCCCCCCEEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCC
Confidence            44444443222222222248889999999999998888789999999999876543    3447899999999999 899


Q ss_pred             EEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCC-EEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310          858 VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN-ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1103)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~-~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1103)
                      +|++|+.||+|++||+.+++.+..+.+|.+.|++++|+|++. ++++++.||+|++||+.+++......   ...+.   
T Consensus       153 ~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~---~~~~~---  226 (357)
T 4g56_B          153 QAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRID---FCASD---  226 (357)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCC---CTTCC---
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeee---ecccc---
Confidence            999999999999999999999999999999999999999874 78999999999999999876433211   11122   


Q ss_pred             CCceEEEEcCCC-CEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCC-CEEEEEecCCcEEEEeCCCceeE
Q 001310          937 PSETHIQFHKDQ-TRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus       937 ~~v~~l~fs~dg-~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
                      ..+.+++|+|++ .+|+++ .|+.|++||+.+++++.. +.+|...|++++|+|++ ++|++++.|++|+|||+.+++.+
T Consensus       227 ~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~  305 (357)
T 4g56_B          227 TIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQT-SAVHSQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVF  305 (357)
T ss_dssp             SCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEE-ECCCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEE
T ss_pred             ccccchhhhhcccceEEEeecccceeEEECCCCcEeEE-EeccceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEe
Confidence            368999999985 567775 789999999999998877 66899999999999998 57999999999999999999876


Q ss_pred             EeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310         1014 CRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus      1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
                      ..+                    +|...|.  +++|+|.++.+|++++.||+|++|++...+.
T Consensus       306 ~~~--------------------~H~~~V~--~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~  346 (357)
T 4g56_B          306 RDL--------------------SHRDFVT--GVAWSPLDHSKFTTVGWDHKVLHHHLPSEGR  346 (357)
T ss_dssp             EEC--------------------CCSSCEE--EEEECSSSTTEEEEEETTSCEEEEECC----
T ss_pred             EEC--------------------CCCCCEE--EEEEeCCCCCEEEEEcCCCeEEEEECCCCCc
Confidence            433                    3667776  6789996699999999999999999965443

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=100.00  E-value=1.8e-38  Score=362.61  Aligned_cols=286  Identities=18%  Similarity=0.287  Sum_probs=266.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.++|++++|+|++.+||+|+.||+|+|||+.+++...   .+.+|...|.+++|+|+++  +|++|+.|++|++||
T Consensus       104 l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iwd  178 (410)
T 1vyh_C          104 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLWD  178 (410)
T ss_dssp             EECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEEE
T ss_pred             ecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEEe
Confidence            56899999999999999999999999999999999987655   7889999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      +.+++++.++.+|...|.+++|++  ++.+|++++.|++|++||+.++.....+..|...+.+++++|+++++++++.  
T Consensus       179 ~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~--  254 (410)
T 1vyh_C          179 FQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN--  254 (410)
T ss_dssp             TTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET--
T ss_pred             CCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC--
Confidence            999999999999999999999965  6679999999999999999999999999999999999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCC--------------------CCEEEEEeCCCcEEEEECCCCe
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTA--------------------KDQILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~  611 (1103)
                        ++.|++||+.+++....+.+|.   ..|.+++|+|+                    +.++++|+.|++|++||+.++.
T Consensus       255 --D~~v~vwd~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~  329 (410)
T 1vyh_C          255 --DQTVRVWVVATKECKAELREHR---HVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM  329 (410)
T ss_dssp             --TSCEEEEETTTCCEEEEECCCS---SCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTE
T ss_pred             --CCeEEEEECCCCceeeEecCCC---ceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCc
Confidence              5669999999999999998887   89999999996                    6789999999999999999999


Q ss_pred             eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEec
Q 001310          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1103)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  691 (1103)
                      ++..+..|.  ..|.+++|+|+|++|++++.|+.|++||..+++.+..+.+|...|++++|+                  
T Consensus       330 ~~~~~~~h~--~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~~v~~l~~~------------------  389 (410)
T 1vyh_C          330 CLMTLVGHD--NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFH------------------  389 (410)
T ss_dssp             EEEEEECCS--SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEEEEC------------------
T ss_pred             eEEEEECCC--CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEc------------------
Confidence            999988764  468999999999999999999999999999999999999999999999997                  


Q ss_pred             CCCCCCCccceeeccccccccccc
Q 001310          692 EDPKEDVKPEISVEAENKSEVEKP  715 (1103)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~  715 (1103)
                          |++.++++++.|++|++|+.
T Consensus       390 ----~~~~~l~sgs~D~~i~vW~~  409 (410)
T 1vyh_C          390 ----KTAPYVVTGSVDQTVKVWEC  409 (410)
T ss_dssp             ----SSSSCEEEEETTSEEEEEC-
T ss_pred             ----CCCCEEEEEeCCCcEEEEeC
Confidence                78889999999999999985

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=100.00  E-value=8.1e-38  Score=347.82  Aligned_cols=286  Identities=14%  Similarity=0.182  Sum_probs=263.0

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.+.|.+++|+||+++|++|+.||+|+|||+.+++.+.   .+..|...|.+++|+|+++  ++++|+.|+.|++||
T Consensus        51 l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw~  125 (340)
T 1got_B           51 LRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEEE
Confidence            77899999999999999999999999999999999886554   6778999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       472 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      +.++    +....+.+|.+.|.++.|.+.  + .+++++.|++|++||+.+++....+..|...|.+++|+|++++++++
T Consensus       126 ~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg  202 (340)
T 1got_B          126 LKTREGNVRVSRELAGHTGYLSCCRFLDD--N-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             TTTCSBSCEEEEEEECCSSCEEEEEEEET--T-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEE
T ss_pred             CccCCCcceeEEEecCCCccEEEEEECCC--C-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEE
Confidence            9876    355678899999999999653  3 59999999999999999999999999999999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      +.    ++.|++||+.++..+..+.+|.   ..|.+++|+|+++++++|+.||+|++||+.+++.+..+..+.....|.+
T Consensus       203 ~~----d~~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~  275 (340)
T 1got_B          203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             ET----TSCEEEEETTTCSEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             eC----CCcEEEEECCCCeeEEEEcCCc---CCEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEE
Confidence            86    5669999999999999999888   8999999999999999999999999999999998888765554456899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      ++|+|+|++|++|+.|+.|++||..+++.+..+.+|...|.+++++                      |++.++++++.|
T Consensus       276 ~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l~s~s~D  333 (340)
T 1got_B          276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD  333 (340)
T ss_dssp             EEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             EEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEc----------------------CCCCEEEEEcCC
Confidence            9999999999999999999999999999999999999999999997                      789999999999


Q ss_pred             ccccccc
Q 001310          708 NKSEVEK  714 (1103)
Q Consensus       708 ~~i~~w~  714 (1103)
                      +.|++|+
T Consensus       334 ~~i~iWd  340 (340)
T 1got_B          334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             ccEEecC
Confidence            9999996

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.1e-38  Score=350.05  Aligned_cols=307  Identities=15%  Similarity=0.229  Sum_probs=250.6

Q ss_pred             cceeEecccCCc-CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          324 KTVAQTLIEGSS-SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       324 ~~~~~~l~~h~~-~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      ..++++|.+|.+ +|++++|||||+ +||+|+.|++|+|||+.++......                ....+|...|.++
T Consensus         5 ~~~~~~~~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~~----------------~~~~~h~~~v~~~   67 (345)
T 3fm0_A            5 LVLLGRVPAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICKS----------------VLSEGHQRTVRKV   67 (345)
T ss_dssp             EEEEEEECCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEEE----------------EECSSCSSCEEEE
T ss_pred             EEEeeeecCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceeee----------------eeccccCCcEEEE
Confidence            357788999988 999999999998 6999999999999999887543221                1246899999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc---eeE
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTY  479 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~  479 (1103)
                      +|+|||++||+|+.|++|++||+.++.. .....+.+|...|.+++|+|+++  +|++|+.|++|++||+.++.   ++.
T Consensus        68 ~~sp~g~~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~  144 (345)
T 3fm0_A           68 AWSPCGNYLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVS  144 (345)
T ss_dssp             EECTTSSEEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEE
T ss_pred             EECCCCCEEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEE
Confidence            9999999999999999999999987642 23346889999999999999999  89999999999999998764   466


Q ss_pred             EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                      .+.+|...|.+++|+|  ++.+|++++.|++|++||......  ...+..|...|.+++|+|+|++|++++.    ++.|
T Consensus       145 ~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v  218 (345)
T 3fm0_A          145 VLNSHTQDVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTV  218 (345)
T ss_dssp             EECCCCSCEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred             EecCcCCCeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeE
Confidence            7889999999999965  667999999999999999987653  4577889999999999999999999986    6679


Q ss_pred             EEEeCCCC---------------eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee----E---EE
Q 001310          558 VEWNESEG---------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL----L---TT  615 (1103)
Q Consensus       558 ~iwd~~~~---------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~---~~  615 (1103)
                      ++||....               +.+..+.+.  |...|.+++|+|++..+++++.|+.|++|+...+..    .   ..
T Consensus       219 ~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~  296 (345)
T 3fm0_A          219 RIWRQYLPGNEQGVACSGSDPSWKCICTLSGF--HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTA  296 (345)
T ss_dssp             EEEEEECTTCTTCCCCC---CEEEEEEEECSS--CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEE
T ss_pred             EEeccccCCCCccceeeccCCccceeEEecCC--CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEe
Confidence            99996321               223344442  247899999999999999999999999999875421    1   11


Q ss_pred             EcCCCCCCCCceEEEecCC-CEEEEEECCCeEEEEEcCCCCeeE
Q 001310          616 IDAGGGLPENPRICFNKNG-TLLAVIANENRIKILETPESNSVD  658 (1103)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~  658 (1103)
                      .....+...|.+++|+|++ .+|++++.||.|++|+..+++...
T Consensus       297 ~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~  340 (345)
T 3fm0_A          297 HLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLH  340 (345)
T ss_dssp             EETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-----
T ss_pred             eecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcc
Confidence            1122345679999999987 599999999999999999876543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=100.00  E-value=4.9e-38  Score=345.54  Aligned_cols=289  Identities=16%  Similarity=0.241  Sum_probs=264.0

Q ss_pred             ccCCCccEEEEEECCC----CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310          392 VRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i  467 (1103)
                      +.+|.+.|.+++|+|+    +.+||+|+.|++|+||++.+++. .....+.+|...|.+++|++++.  ++++++.|++|
T Consensus        28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~-~~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i  104 (321)
T 3ow8_A           28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERL-DLQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI  104 (321)
T ss_dssp             TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred             cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCe-eeeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence            6689999999999985    67999999999999999987643 22336889999999999999999  89999999999


Q ss_pred             EEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      ++||+.+++++..+..|...+.+++|+|  ++.+|++++.||.|++|+++++.....+..+...+.+++|+|+|++|+++
T Consensus       105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg  182 (321)
T 3ow8_A          105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG  182 (321)
T ss_dssp             EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred             EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence            9999999999999999999999999954  77899999999999999999999988888888999999999999999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      +.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++++|++++.|+.|++||+.+++....+..|  ...|.+
T Consensus       183 ~~----dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h--~~~v~~  253 (321)
T 3ow8_A          183 AI----DGIINIFDIATGKLLHTLEGHA---MPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGH--ASWVLN  253 (321)
T ss_dssp             ET----TSCEEEEETTTTEEEEEECCCS---SCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCC--SSCEEE
T ss_pred             cC----CCeEEEEECCCCcEEEEEcccC---CceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCC--CCceEE
Confidence            86    5669999999999999999887   89999999999999999999999999999999999888866  446899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      ++|+|++++|++++.|++|++||+.+++.+..+.+|...|.+++|+                      |+++.+++++.|
T Consensus       254 ~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s----------------------~~g~~l~s~~~d  311 (321)
T 3ow8_A          254 VAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYN----------------------GNGSKIVSVGDD  311 (321)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----------------------TTSSEEEEEETT
T ss_pred             EEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEEC----------------------CCCCEEEEEeCC
Confidence            9999999999999999999999999999999999999999999997                      788899999999


Q ss_pred             ccccccccc
Q 001310          708 NKSEVEKPL  716 (1103)
Q Consensus       708 ~~i~~w~~~  716 (1103)
                      +.|++||..
T Consensus       312 ~~i~vwd~p  320 (321)
T 3ow8_A          312 QEIHIYDCP  320 (321)
T ss_dssp             CCEEEEECC
T ss_pred             CeEEEEeCC
Confidence            999999963

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=4.3e-37  Score=338.24  Aligned_cols=296  Identities=18%  Similarity=0.307  Sum_probs=262.1

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      .....++.+|.+.|++++|+|+|+ +|++|+.|+.|+|||+.+++....                   +.+|...|.+++
T Consensus        13 ~~~~~~~~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~~-------------------~~~h~~~v~~~~   72 (312)
T 4ery_A           13 YALKFTLAGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEKT-------------------ISGHKLGISDVA   72 (312)
T ss_dssp             CEEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEE
T ss_pred             ceeEEEEcccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccchh-------------------hccCCCceEEEE
Confidence            345678899999999999999998 689999999999999999887654                   678999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      |+|++++|++|+.|+.|++||+.+++.+.   .+.+|...|.+++|+|+++  ++++++.|+.|++||+.+++++..+..
T Consensus        73 ~~~~~~~l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~  147 (312)
T 4ery_A           73 WSSDSNLLVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPA  147 (312)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             EcCCCCEEEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecC
Confidence            99999999999999999999999987555   6789999999999999999  899999999999999999999999999


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      |..+|.+++|++  ++.++++++.||.|++||+.+.+....+. .+...+..++|+|++++|++++.    ++.|++||+
T Consensus       148 ~~~~v~~~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~  221 (312)
T 4ery_A          148 HSDPVSAVHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDY  221 (312)
T ss_dssp             CSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEET
T ss_pred             CCCcEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEEC
Confidence            999999999965  67899999999999999999888776654 45568999999999999999876    567999999


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-  641 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-  641 (1103)
                      .+++.+..+.+|......+......+++.++++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|+++++++++ 
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~  299 (312)
T 4ery_A          222 SKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAAL  299 (312)
T ss_dssp             TTTEEEEEECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEEC
T ss_pred             CCCcEEEEEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEc
Confidence            9999999998877333334444455778899999999999999999999999998764  4689999999999999997 


Q ss_pred             -CCCeEEEEEcC
Q 001310          642 -NENRIKILETP  652 (1103)
Q Consensus       642 -~dg~i~iw~~~  652 (1103)
                       .|+.|++|+.+
T Consensus       300 ~~d~~i~~W~~d  311 (312)
T 4ery_A          300 ENDKTIKLWKSD  311 (312)
T ss_dssp             TTTCCEEEEECC
T ss_pred             cCCccEEEecCC
Confidence             69999999864

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=4.1e-38  Score=348.46  Aligned_cols=295  Identities=13%  Similarity=0.161  Sum_probs=230.5

Q ss_pred             ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310          733 KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1103)
Q Consensus       733 ~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  812 (1103)
                      +...|.+++|+|||+.|++++ |+++++|+...               .+|+................+...|.+++|+|
T Consensus        29 ~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~   92 (344)
T 4gqb_B           29 MERQLEAARYRSDGALLLGAS-SLSGRCWAGSL---------------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVG   92 (344)
T ss_dssp             CCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEE---------------EEESSGGGTTCGGGCSEEEEESSCEEEEEEET
T ss_pred             ccCCEEEEEECCCCCEEEEEe-CCceEEeecee---------------eeeccccccCCcceeeeeeccCCCEEEEEEeC
Confidence            556799999999999777665 77888887321               11211110000000000012567899999999


Q ss_pred             CCCEEEEEcCCeEEEEEcCCceeeEE----ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC
Q 001310          813 NDAYLFSASGGVISLYIVMTFKTILT----IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR  888 (1103)
Q Consensus       813 d~~~l~~~~dg~i~iwd~~~~~~~~~----~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~  888 (1103)
                      |+.+++.+.||+|+|||+.+++.+..    +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+.
T Consensus        93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~  171 (344)
T 4gqb_B           93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQ  171 (344)
T ss_dssp             TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred             CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCc
Confidence            97655555589999999998876544    447999999999999 8999999999999999999999999999999999


Q ss_pred             EEEEEEccCC-CEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC-CCEEEEE-eCCeEEEEECC
Q 001310          889 VTGLVFSDAL-NILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAE  965 (1103)
Q Consensus       889 V~~l~~s~dg-~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~l~~~-~d~~v~iwd~~  965 (1103)
                      |.+++|+|++ .+|++++.|++|++||+.+++....  +.. ..+.   ..+.+++|+|+ +++|+++ .|+.|++||+.
T Consensus       172 V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~--~~~-~~~~---~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~  245 (344)
T 4gqb_B          172 VTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQ--IGC-SAPG---YLPTSLAWHPQQSEVFVFGDENGTVSLVDTK  245 (344)
T ss_dssp             EEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEE--CC-----C---CCEEEEEECSSCTTEEEEEETTSEEEEEESC
T ss_pred             eEEEEecCCCCCceeeeccccccccccccccceeee--eec-ceee---ccceeeeecCCCCcceEEeccCCcEEEEECC
Confidence            9999999998 5789999999999999998764332  111 1111   25889999995 5677775 78999999999


Q ss_pred             CceEEEEeeCCCCcCeEEEEEccCC-CEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceee
Q 001310          966 ELTCLKQWFPISSVPISQATFSCDC-RMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP 1044 (1103)
Q Consensus       966 ~~~~~~~~~~~h~~~v~~l~fs~dg-~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 1044 (1103)
                      +++++.. +.+|...|++++|+||+ ++|++|+.|++|+|||+.++++.. +.                   +|...|. 
T Consensus       246 ~~~~~~~-~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~-------------------~H~~~V~-  303 (344)
T 4gqb_B          246 STSCVLS-SAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ-------------------AHRDFVR-  303 (344)
T ss_dssp             C--CCEE-EECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC-------------------CCSSCEE-
T ss_pred             CCcEEEE-EcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec-------------------CCCCCEE-
Confidence            9999887 56899999999999998 579999999999999999987652 22                   5777786 


Q ss_pred             EEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310         1045 HAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus      1045 ~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
                       +++|+|++..+|++++.||+|++|++..
T Consensus       304 -~v~~sp~~~~llas~s~D~~v~~w~v~~  331 (344)
T 4gqb_B          304 -DATWSPLNHSLLTTVGWDHQVVHHVVPT  331 (344)
T ss_dssp             -EEEECSSSTTEEEEEETTSCEEEEECCC
T ss_pred             -EEEEeCCCCeEEEEEcCCCeEEEEECCC
Confidence             6789999667889999999999999953

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=100.00  E-value=4.7e-38  Score=351.45  Aligned_cols=294  Identities=13%  Similarity=0.148  Sum_probs=238.8

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcC------CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ..|...|++++|||||+ +||+|+.      |+.|++|+..++........               ...+|...|.+++|
T Consensus        39 ~~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~---------------~~~~~~~~V~~~~~  102 (357)
T 4g56_B           39 ACMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCT---------------AGVQTEAGVTDVAW  102 (357)
T ss_dssp             -CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGGCS---------------EEEECSSCEEEEEE
T ss_pred             ccccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeEec---------------ccCCCCCCEEEEEE
Confidence            57999999999999998 6889887      67889998887765432111               13468899999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCcccc-ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      +|++++| +++.||+|+|||+.+++.... .....+|...|.+++|+|+++  +|++|+.|++|++||+.+++++..+.+
T Consensus       103 s~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~  179 (357)
T 4g56_B          103 VSEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNA  179 (357)
T ss_dssp             ETTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             cCCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcC
Confidence            9998655 567899999999998865432 224568999999999999999  899999999999999999999999999


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe--cCCCccEEEEEEccCC-CEEEEEecCCCCceeEEEE
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEW  560 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iw  560 (1103)
                      |...|.+++|++..+ .++++++.||+|++||+++++....+  ..+...+.+++|+|++ .+|++++.    ++.|++|
T Consensus       180 h~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~w  254 (357)
T 4g56_B          180 HSSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLV  254 (357)
T ss_dssp             CSSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEE
T ss_pred             CCCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEE
Confidence            999999999976432 47899999999999999988766544  3456679999999975 56777765    5669999


Q ss_pred             eCCCCeeEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEE
Q 001310          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLA  638 (1103)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~  638 (1103)
                      |+.+++.+..+.+|.   ..|.+++|+|++ ++|++|+.|++|+|||+.+++.+..+.   +...|.+++|+| ++++|+
T Consensus       255 d~~~~~~~~~~~~~~---~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~---H~~~V~~vafsP~d~~~l~  328 (357)
T 4g56_B          255 NIKNPDSAQTSAVHS---QNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS---HRDFVTGVAWSPLDHSKFT  328 (357)
T ss_dssp             ESSCGGGCEEECCCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC---CSSCEEEEEECSSSTTEEE
T ss_pred             ECCCCcEeEEEeccc---eeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC---CCCCEEEEEEeCCCCCEEE
Confidence            999999999999888   899999999987 578899999999999999998887652   345799999998 899999


Q ss_pred             EEECCCeEEEEEcCCC
Q 001310          639 VIANENRIKILETPES  654 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~~  654 (1103)
                      +++.|++|++|++...
T Consensus       329 s~s~Dg~v~iW~~~~~  344 (357)
T 4g56_B          329 TVGWDHKVLHHHLPSE  344 (357)
T ss_dssp             EEETTSCEEEEECC--
T ss_pred             EEcCCCeEEEEECCCC
Confidence            9999999999999764

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=100.00  E-value=1.4e-37  Score=344.08  Aligned_cols=298  Identities=14%  Similarity=0.119  Sum_probs=238.8

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccc-cceeeeeccCCCccEEEEEECCCCCE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACS-MLFKTALVRDPGVSVNRVVWSPDGSL  410 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~h~~~V~~~~~spdg~~  410 (1103)
                      .|...|.+++|||||+ +|++++ |+++++||...         .+|+..... ..........|...|.+++|+||+ +
T Consensus        28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~   95 (344)
T 4gqb_B           28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSL---------WLFKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G   95 (344)
T ss_dssp             SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEE---------EEESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred             cccCCEEEEEECCCCC-EEEEEe-CCceEEeecee---------eeeccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence            4667899999999998 677776 77888887321         111110000 000001122366789999999985 6


Q ss_pred             EEEEeCCCeEEEEEecCCCccccc-eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceE
Q 001310          411 LGVAYSKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1103)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  489 (1103)
                      |++|+.||+|+|||+.+++.+... ..+.+|...|++++|+|+|+  +|++|+.|++|++||+.+++++..+.+|...|.
T Consensus        96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~  173 (344)
T 4gqb_B           96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT  173 (344)
T ss_dssp             EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred             EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence            889999999999999998765432 24568999999999999999  899999999999999999999999999999999


Q ss_pred             EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec--CCCccEEEEEEccC-CCEEEEEecCCCCceeEEEEeCCCCe
Q 001310          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNESEGA  566 (1103)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~d-g~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1103)
                      +++|++.. ..++++++.|++|++||+++++....+.  .+...+.+++|+|+ ++++++++.    ++.|++||+++++
T Consensus       174 ~~~~~~~~-~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~  248 (344)
T 4gqb_B          174 CVAASPHK-DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS  248 (344)
T ss_dssp             EEEECSSC-TTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred             EEEecCCC-CCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence            99997643 2588999999999999999988877664  34557899999995 567777765    6679999999999


Q ss_pred             eEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCC
Q 001310          567 IKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANEN  644 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg  644 (1103)
                      .+..+.+|.   ..|.+++|+|++ ++|++|+.|++|++||+.+++... +..|  ...|.+++|+|+++ +|++++.|+
T Consensus       249 ~~~~~~~h~---~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~~H--~~~V~~v~~sp~~~~llas~s~D~  322 (344)
T 4gqb_B          249 CVLSSAVHS---QCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQAH--RDFVRDATWSPLNHSLLTTVGWDH  322 (344)
T ss_dssp             CCEEEECCS---SCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-ECCC--SSCEEEEEECSSSTTEEEEEETTS
T ss_pred             EEEEEcCCC---CCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-EcCC--CCCEEEEEEeCCCCeEEEEEcCCC
Confidence            999999988   899999999998 578899999999999999988654 4444  55799999999886 677999999


Q ss_pred             eEEEEEcCCC
Q 001310          645 RIKILETPES  654 (1103)
Q Consensus       645 ~i~iw~~~~~  654 (1103)
                      +|++|++.+.
T Consensus       323 ~v~~w~v~~~  332 (344)
T 4gqb_B          323 QVVHHVVPTE  332 (344)
T ss_dssp             CEEEEECCC-
T ss_pred             eEEEEECCCC
Confidence            9999999865

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=100.00  E-value=1.3e-36  Score=339.58  Aligned_cols=287  Identities=15%  Similarity=0.172  Sum_probs=261.1

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.+.|.+++|+||+++||+|+.||+|+|||..+++...   .+..|...|.+++|+|+|.  .+++++.|+.+++|+
T Consensus        60 l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           60 LKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVYP  134 (354)
T ss_dssp             EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEEE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEEE
Confidence            77899999999999999999999999999999998876544   5678889999999999999  899999999999999


Q ss_pred             CCCC------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc--CCCE
Q 001310          472 AVTG------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA--NGRR  543 (1103)
Q Consensus       472 ~~~~------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~--dg~~  543 (1103)
                      +...      .....+.+|...|.+++|++  ++..|++++.|++|++||+.+++....+..|...+.+++|+|  +|++
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~  212 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT  212 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCE
Confidence            8654      34567789999999999965  567999999999999999999999999999999999999987  5789


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCC
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLP  623 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~  623 (1103)
                      |++++.    ++.|++||+++++.+..+.+|.   ..|.+++|+|+++.+++++.|++|++||+..++.+..+..+....
T Consensus       213 l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~  285 (354)
T 2pbi_B          213 FVSGGC----DKKAMVWDMRSGQCVQAFETHE---SDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIF  285 (354)
T ss_dssp             EEEEET----TSCEEEEETTTCCEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCS
T ss_pred             EEEEeC----CCeEEEEECCCCcEEEEecCCC---CCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCccc
Confidence            999986    5669999999999999998887   899999999999999999999999999999998888776655445


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1103)
                      .+.+++|+|+|++|++++.|+.|++||+.++..+..+.+|...|.+++|+                      |+|+++++
T Consensus       286 ~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~~~v~~l~~s----------------------pdg~~l~s  343 (354)
T 2pbi_B          286 GASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----------------------PDGTAFCS  343 (354)
T ss_dssp             CEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEEC----------------------TTSSCEEE
T ss_pred             ceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCCCcEEEEEEC----------------------CCCCEEEE
Confidence            67899999999999999999999999999999999999999999999997                      78999999


Q ss_pred             ecccccccccc
Q 001310          704 VEAENKSEVEK  714 (1103)
Q Consensus       704 ~~~d~~i~~w~  714 (1103)
                      ++.|++|++|+
T Consensus       344 gs~D~~v~vW~  354 (354)
T 2pbi_B          344 GSWDHTLRVWA  354 (354)
T ss_dssp             EETTSEEEEEC
T ss_pred             EcCCCCEEecC
Confidence            99999999996

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.7e-37  Score=355.72  Aligned_cols=334  Identities=13%  Similarity=0.180  Sum_probs=281.6

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEEC----CCCCe------eeeeeeeEeecccccccee-eeeccCCCccEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV----NSGQK------LFIRNFKVWDIGACSMLFK-TALVRDPGVSVN  400 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~----~~~~~------~~~~~~~~~~~~~~~~~~~-~~~~~~h~~~V~  400 (1103)
                      .|.+.|++++|+|+|+.+||+|+.|+.|++||+    .+++.      ......          ++. .....+|.+.|.
T Consensus        43 ~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~v~  112 (425)
T 1r5m_A           43 VKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRH----------PFALSASSGKTTNQVT  112 (425)
T ss_dssp             EECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEEC----------CCCCC------CBCEE
T ss_pred             eccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccc----------cccccccccCCCCceE
Confidence            455899999999999845899999999999999    88873      221100          000 001223788999


Q ss_pred             EEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310          401 RVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       401 ~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  480 (1103)
                      +++|+|++++|++++.||.|++|| .+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++.+..
T Consensus       113 ~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~  186 (425)
T 1r5m_A          113 CLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGTVMQH  186 (425)
T ss_dssp             EEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTEEEEE
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCcEEEE
Confidence            999999999999999999999999 4444333   6789999999999999999  899999999999999999999999


Q ss_pred             eecCCCc---------------eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEE
Q 001310          481 FEGHGAP---------------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       481 ~~~~~~~---------------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1103)
                      +..+...               +.+++|++.   ..+++++.||.|++||+.+.+....+..+...+.+++|+|++++|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  263 (425)
T 1r5m_A          187 FELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLL  263 (425)
T ss_dssp             ECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEE
T ss_pred             eeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEE
Confidence            9888777               888888753   3699999999999999999988888889999999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1103)
                      +++.    ++.|++||+.+++.+..+..|.   ..+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+.  ..+
T Consensus       264 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~i  333 (425)
T 1r5m_A          264 SASD----DGTLRIWHGGNGNSQNCFYGHS---QSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDG--VPI  333 (425)
T ss_dssp             EEET----TSCEEEECSSSBSCSEEECCCS---SCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTT--CCE
T ss_pred             EEcC----CCEEEEEECCCCccceEecCCC---ccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCC--ccE
Confidence            9986    5569999999999988888777   899999999999 99999999999999999999998888663  468


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCCC--------------------eeEecccccc--ceeeeEEecCCceeeeec
Q 001310          626 PRICFNKNGTLLAVIANENRIKILETPESN--------------------SVDAAGVLSD--NLRKLSVNPISTVTGAGI  683 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~--------------------~~~~~~~~~~--~i~~~~~~~~~~~~~~~~  683 (1103)
                      .+++|+|++++|++++.||.|++|++.++.                    .+..+..+..  .+.+++|+          
T Consensus       334 ~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s----------  403 (425)
T 1r5m_A          334 FAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWN----------  403 (425)
T ss_dssp             EEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEEC----------
T ss_pred             EEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEcc----------
Confidence            999999999999999999999999999877                    7788888866  88888886          


Q ss_pred             cCCceEecCCCCCCCccceeecccccccccccc
Q 001310          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                                  |+++++++++.|+.|++|++.
T Consensus       404 ------------~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          404 ------------CAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             ------------TTSSEEEEEESSSCCEEEECC
T ss_pred             ------------CCCceEEEEecCceEEEEeec
Confidence                        788899999999999999975

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=9.2e-37  Score=339.96  Aligned_cols=302  Identities=17%  Similarity=0.276  Sum_probs=245.0

Q ss_pred             cceeEecccCCcCceEEEe-----cC-CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310          324 KTVAQTLIEGSSSPMSMDF-----HP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~-----sp-dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  397 (1103)
                      ..+..+|.+|++.|++++|     +| |++ +|++|+.|++|+|||+.+++.....            ......+.+|..
T Consensus        11 ~~~~~~l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~~------------~~~~~~l~~h~~   77 (343)
T 2xzm_R           11 VVKRGILEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGYF------------GIPHKALTGHNH   77 (343)
T ss_dssp             EEEEEEEECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSBS------------EEEEEEECCCSS
T ss_pred             eeeeeeeccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCccccc------------ccccchhccCCC
Confidence            4567889999999999999     77 887 7999999999999999765432100            001123789999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  477 (1103)
                      .|.+++|+|++.+|++|+.|++|++||+.+++.+.   .+.+|...|.+++|+|+++  .|++++.|++|++||+. +..
T Consensus        78 ~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~-~~~  151 (343)
T 2xzm_R           78 FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNIL-GEC  151 (343)
T ss_dssp             CEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESS-SCE
T ss_pred             ceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEecc-CCc
Confidence            99999999999999999999999999999987554   6789999999999999999  89999999999999987 444


Q ss_pred             eEEee---cCCCceEEEEeeecCC--------ccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310          478 TYSFE---GHGAPVYSLCPHAKEN--------IHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1103)
Q Consensus       478 ~~~~~---~~~~~v~~~~~~~~~~--------~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1103)
                      .....   +|...|.+++|++...        +.++++++.||.|++|| ........+..|...|.+++|+|+|++|++
T Consensus       152 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd-~~~~~~~~~~~h~~~v~~~~~s~~g~~l~s  230 (343)
T 2xzm_R          152 KFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHLSISPNGKYIAT  230 (343)
T ss_dssp             EEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEE-TTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             eeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEc-CCCceeEEEcCccccceEEEECCCCCEEEE
Confidence            44443   7889999999976532        26899999999999999 445566678889999999999999999999


Q ss_pred             EecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--EEcCC----
Q 001310          547 CGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDAG----  619 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~----  619 (1103)
                      ++.    ++.|++||+.. ......+. +.   ..|.+++|+|++.+++ ++.|+.|++||+.+++...  .+...    
T Consensus       231 gs~----dg~v~iwd~~~~~~~~~~~~-~~---~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~  301 (343)
T 2xzm_R          231 GGK----DKKLLIWDILNLTYPQREFD-AG---STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITK  301 (343)
T ss_dssp             EET----TCEEEEEESSCCSSCSEEEE-CS---SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGG
T ss_pred             EcC----CCeEEEEECCCCcccceeec-CC---CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchh
Confidence            986    66799999944 44444443 22   5699999999988765 4567889999998876543  33311    


Q ss_pred             -----CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          620 -----GGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       620 -----~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                           ++...+.+++|+|+|++|++|+.||.|++|++.++
T Consensus       302 ~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g  341 (343)
T 2xzm_R          302 AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS  341 (343)
T ss_dssp             BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred             hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence                 33456889999999999999999999999998653

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.6e-36  Score=335.64  Aligned_cols=299  Identities=16%  Similarity=0.176  Sum_probs=234.5

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ..++++|.+|++.|++++|+|+   +||+|+.|++|+|||+.++.......+               ...+|...|.+++
T Consensus         4 ~~~~~~~~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~~~~~---------------~~~~h~~~v~~v~   65 (330)
T 2hes_X            4 INLIKSLKLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTLIDVL---------------DETAHKKAIRSVA   65 (330)
T ss_dssp             CEEEEEEECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEEEEEE---------------CTTCCCSCEEEEE
T ss_pred             cccceeeccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEEEEEE---------------ecCCccCCEEEEE
Confidence            3467889999999999999998   689999999999999987642211000               0234999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCC----ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC----C
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----G  475 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~----~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~  475 (1103)
                      |+|++++||+|+.|++|+|||+....    .......+.+|...|.+++|+|+++  +|++|+.|++|++||+..    .
T Consensus        66 ~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~  143 (330)
T 2hes_X           66 WRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEY  143 (330)
T ss_dssp             ECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCC
T ss_pred             ECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCe
Confidence            99999999999999999999996432    1223446789999999999999999  899999999999999943    2


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC--CeeEEecCCCccEEEEEEccC--CCEEEEEecCC
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL--GARVDYDAPGLGCTRMAYSAN--GRRLFSCGTSK  551 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s~d--g~~l~~~~~~~  551 (1103)
                      +++..+.+|...|.+++|+|  ++.+|++++.|++|++||....  +....+..|...|.+++|+|+  +.+|++++.  
T Consensus       144 ~~~~~~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~--  219 (330)
T 2hes_X          144 ECISVLQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD--  219 (330)
T ss_dssp             EEEEEECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET--
T ss_pred             EEEEEeccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC--
Confidence            56778899999999999965  6679999999999999998766  456678889999999999998  778998876  


Q ss_pred             CCceeEEEEeCCCC--------eeEEEEec-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCee--EEEEcCCC
Q 001310          552 EGESFLVEWNESEG--------AIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL--LTTIDAGG  620 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~--------~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~  620 (1103)
                        ++.|++||+.++        .....+.+ |.   ..|.+++|++++ .+++++.||.|++||..+++.  ..... ..
T Consensus       220 --D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~~-~~  292 (330)
T 2hes_X          220 --DSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKRA-LC  292 (330)
T ss_dssp             --TSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEES-CT
T ss_pred             --CCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEeccc-cc
Confidence              667999998754        33344443 44   889999999765 899999999999999988742  32321 22


Q ss_pred             CCC-CCceEEEec--CCCEEEEEECCCeEEEEEcCC
Q 001310          621 GLP-ENPRICFNK--NGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       621 ~~~-~v~~v~~s~--~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      +.. .|.+++|+|  ++++|++++.||.|++|++..
T Consensus       293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            233 689999999  789999999999999999864

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=2.5e-36  Score=343.17  Aligned_cols=307  Identities=15%  Similarity=0.238  Sum_probs=248.9

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      .+.+ +|.+.|.+++|||||+ +||+|+ +++++||++.+|+.+.......-. ......+.......+...|.+++|+|
T Consensus        58 ~~~~-~h~~~V~~v~fspdg~-~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~  133 (393)
T 1erj_A           58 HKSL-DHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP  133 (393)
T ss_dssp             EEEE-ECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred             EEec-CCCCEEEEEEECCCCC-EEEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence            3444 6999999999999999 688876 689999999999877542110000 00000011111123445699999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      ||++||+|+.|++|+|||+.+++.+.   .+.+|...|.+++|+|+++  .|++++.|++|++||+.++++...+. +..
T Consensus       134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~  207 (393)
T 1erj_A          134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED  207 (393)
T ss_dssp             TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred             CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence            99999999999999999999886544   6889999999999999999  89999999999999999999988876 567


Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-------cCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      .+.++++++. ++.++++++.||.|++||+.++.....+       ..|...|.+++|+|+|++|++++.    ++.|++
T Consensus       208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~  282 (393)
T 1erj_A          208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL  282 (393)
T ss_dssp             CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred             CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence            7899998653 6789999999999999999988776655       467789999999999999999986    667999


Q ss_pred             EeCCCC------------eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          560 WNESEG------------AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       560 wd~~~~------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      ||+.+.            .....+.+|.   ..|.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.  ..|.+
T Consensus       283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~--~~v~~  357 (393)
T 1erj_A          283 WNLQNANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVIS  357 (393)
T ss_dssp             EEC---------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEE
T ss_pred             EECCCCCCcccccCCCCCcceEEEeccc---CcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCC--CCEEE
Confidence            999763            3445666776   889999999999999999999999999999999999988764  46899


Q ss_pred             EEEec------CCCEEEEEECCCeEEEEEcCC
Q 001310          628 ICFNK------NGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       628 v~~s~------~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      ++|++      ++++|++|+.|++|++|+...
T Consensus       358 v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          358 VAVANGSSLGPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             EEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred             EEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence            99886      688999999999999999764

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=2.1e-35  Score=378.68  Aligned_cols=523  Identities=13%  Similarity=0.054  Sum_probs=378.3

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      +.+.+.+.+|||+  + +|.++. +.|.+|++.+++...                    +.+|...|.+++|||||++||
T Consensus        13 ~~~~~~~~~~S~~--~-iaf~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la   68 (1045)
T 1k32_A           13 MPNLLLNPDIHGD--R-IIFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA   68 (1045)
T ss_dssp             CCCCCEEEEEETT--E-EEEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred             ccceEeCcEEeCC--E-EEEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence            3567899999974  3 444443 689999998886543                    567999999999999999999


Q ss_pred             EEeCC------CeEEEEEecCCCccccceEeccccccE-------EEEEEecCCCceEEEEEcCC------CceEEEeCC
Q 001310          413 VAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDD------KTIKVWDAV  473 (1103)
Q Consensus       413 s~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~  473 (1103)
                      +++.+      ..|++||+.+++.    ..+..|...+       ..++|+|||+  ++++++.+      ..|.+||+.
T Consensus        69 ~~s~~~~~~~~~~i~~~d~~~g~~----~~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~  142 (1045)
T 1k32_A           69 IRVMRGSSLNTADLYFYNGENGEI----KRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND  142 (1045)
T ss_dssp             EEEEESTTCCEEEEEEEETTTTEE----EECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred             EEEeeccCCCCCeEEEEECCCCCe----EEcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence            88643      3799999988752    2577888888       9999999998  67777754      357788887


Q ss_pred             CCceeEEeecCCCceEEEEeeecCCccEEEEEEC------------CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV------------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG  541 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg  541 (1103)
                      +++... +..+.  ...++|++   | ++++++.            +...++|..........+..+...+.++.|+++ 
T Consensus       143 ~g~~~~-l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-  214 (1045)
T 1k32_A          143 GINFVP-LNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-  214 (1045)
T ss_dssp             GTEEEE-CCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-
T ss_pred             CCCeEE-ecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-
Confidence            776543 33332  33556654   5 7887753            345677765444555566788889999999988 


Q ss_pred             CEEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310          542 RRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  620 (1103)
                      ..++++..    ++.+.+|.+.. +.....+..+.    .+...+|+|+|++++++. ++.|++|++.... +..+..+.
T Consensus       215 ~l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~----~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~  284 (1045)
T 1k32_A          215 RIYFITDI----DGFGQIYSTDLDGKDLRKHTSFT----DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGD  284 (1045)
T ss_dssp             EEEEEECT----TSSCEEEEEETTSCSCEECCCCC----SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCC
T ss_pred             EEEEEEec----cCceEEEEEeCCCCcceEecCCC----CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCc
Confidence            44444432    33355555432 33334444443    355679999999988874 8999999995443 43444321


Q ss_pred             ---------CCCCCceEEEe-cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEe
Q 001310          621 ---------GLPENPRICFN-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  690 (1103)
Q Consensus       621 ---------~~~~v~~v~~s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  690 (1103)
                               +...+..++|+ |||+++++++ ++.+.+|+..++.... +.                             
T Consensus       285 ~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~-~~-----------------------------  333 (1045)
T 1k32_A          285 LESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK-VP-----------------------------  333 (1045)
T ss_dssp             CCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE-CS-----------------------------
T ss_pred             ccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEE-cc-----------------------------
Confidence                     11247899999 9999999888 6889999877553221 10                             


Q ss_pred             cCCCCCCCccceeeccccccccccccccCCccceeeeccCccccc-cEEEEEEecCCcEEEEeecCceEE-EeecCCCcc
Q 001310          691 NEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKAN-KISRLTYNNGGQAIFALASNGVHL-MWRWPRNDL  768 (1103)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~g~~l~~~~~dg~i~-vw~~~~~~~  768 (1103)
                                                               .+.. .+..++|+ ||+.++.++.++.+. +|++...  
T Consensus       334 -----------------------------------------~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~--  369 (1045)
T 1k32_A          334 -----------------------------------------EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTG--  369 (1045)
T ss_dssp             -----------------------------------------CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTC--
T ss_pred             -----------------------------------------CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCC--
Confidence                                                     1233 57788899 999898888877666 6665432  


Q ss_pred             ccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCee
Q 001310          769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTAT  847 (1103)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~  847 (1103)
                                          . ...  +.  ++...+..++|+|||++|++++ ++.|++||+.+++....+..|...+.
T Consensus       370 --------------------~-~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~  424 (1045)
T 1k32_A          370 --------------------K-AEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMIT  424 (1045)
T ss_dssp             --------------------C-EEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCC
T ss_pred             --------------------C-ceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCcc
Confidence                                1 111  11  3677899999999999999887 68999999999988888778888999


Q ss_pred             EEEEcCCCCCEEEEEeCCC----------eEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 001310          848 SLAFNPHDNNVIAIGMDDS----------TILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       848 ~l~~s~~d~~~lasg~~dg----------~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~  917 (1103)
                      +++||| |+++|++++.++          .|++||+.+++ +..+..|...+..++|+|||++|++++.++...+|+...
T Consensus       425 ~~~~Sp-DG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~  502 (1045)
T 1k32_A          425 DFTISD-NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV  502 (1045)
T ss_dssp             CEEECT-TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred             ceEECC-CCCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence            999999 899998887644          99999999887 677888988999999999999999999988888887654


Q ss_pred             Cceeee-----eee--e---------------------cCCCc-------ccCCCCceEEEEcCCCCEEEE---------
Q 001310          918 WGIQTC-----RSL--Q---------------------TPDGV-------MTLAPSETHIQFHKDQTRFLL---------  953 (1103)
Q Consensus       918 ~~~~~~-----~~~--~---------------------~~~~~-------~~~~~~v~~l~fs~dg~~l~~---------  953 (1103)
                      ......     ..+  .                     ...+.       ....+.+..++|+|||+++++         
T Consensus       503 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~  582 (1045)
T 1k32_A          503 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAA  582 (1045)
T ss_dssp             SCEECCSCBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHH
T ss_pred             cccccccCceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccc
Confidence            322000     000  0                     00010       011236789999999998875         


Q ss_pred             ---E--eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310          954 ---V--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       954 ---~--~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                         +  ....|++||+.+++.... .    ..+.+++|||||++|++++.| .|++||+.+++
T Consensus       583 ~~~~~~~~~~l~~~d~~~~~~~~l-~----~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          583 YYQGAPEKGVLLKYDVKTRKVTEV-K----NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             HHHCCCCCEEEEEEETTTCCEEEE-E----EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred             cccccCCCceEEEEECCCCcEEEe-e----cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence               1  245799999998876433 2    568899999999999998766 89999998876

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=100.00  E-value=2e-36  Score=330.65  Aligned_cols=268  Identities=19%  Similarity=0.254  Sum_probs=241.8

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.+.|.+++|+||+++||+++.||+|++||+.++..+.   .+.+|..+|.+++|+|+++  +|++|+.|++|++||
T Consensus         9 ~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~vwd   83 (304)
T 2ynn_A            9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRVFN   83 (304)
T ss_dssp             EEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEEEE
T ss_pred             ecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEEEE
Confidence            67899999999999999999999999999999999986554   6788999999999999999  899999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEcc-CCCEEEEEec
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSA-NGRRLFSCGT  549 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~-dg~~l~~~~~  549 (1103)
                      +.+++++..+.+|...|.+++|+|  ++.+|++++.||+|++||+++... ...+..|...|.+++|+| ++..|++++.
T Consensus        84 ~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~  161 (304)
T 2ynn_A           84 YNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL  161 (304)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEET
T ss_pred             CCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeC
Confidence            999999999999999999999965  667999999999999999988744 457788999999999999 6789999986


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                          ++.|++||+.++.....+..+.  ...+..+.|+|  ++.++++++.|++|++||+.+++++..+..|.  ..|.+
T Consensus       162 ----D~~v~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~--~~v~~  233 (304)
T 2ynn_A          162 ----DRTVKVWSLGQSTPNFTLTTGQ--ERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHM--SNVSF  233 (304)
T ss_dssp             ----TSEEEEEETTCSSCSEEEECCC--TTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCS--SCEEE
T ss_pred             ----CCeEEEEECCCCCccceeccCC--cCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCC--CCEEE
Confidence                6679999998887766665433  36789999986  67899999999999999999999999998774  46899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEec
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNP  674 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~  674 (1103)
                      ++|+|++++|++++.||+|++||..+++....+..+...+.+++++|
T Consensus       234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~  280 (304)
T 2ynn_A          234 AVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLERSWCIATHP  280 (304)
T ss_dssp             EEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSSSSEEEEEECT
T ss_pred             EEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCCccEEEEEECC
Confidence            99999999999999999999999999999999999999999999884

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=100.00  E-value=2.7e-37  Score=349.34  Aligned_cols=291  Identities=15%  Similarity=0.160  Sum_probs=256.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.+.|++++|+|++++||+|+.|++|+|||+.+++...   .+.+|...|.+++|+|+|+  +|++|+.|+.|++||
T Consensus        62 l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~---~~~~h~~~v~~~~~s~~g~--~las~~~d~~v~iw~  136 (380)
T 3iz6_a           62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTH---AIKLHCPWVMECAFAPNGQ--SVACGGLDSACSIFN  136 (380)
T ss_dssp             ECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEE---EEECCCTTCCCCEECTTSS--EEEECCSSSCCEEEE
T ss_pred             ccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccce---EEecCCCCEEEEEECCCCC--EEEEeeCCCcEEEEE
Confidence            77999999999999999999999999999999999886554   6789999999999999999  899999999999999


Q ss_pred             CCCCc-------eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-----cCCCccEEEEEEcc
Q 001310          472 AVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----DAPGLGCTRMAYSA  539 (1103)
Q Consensus       472 ~~~~~-------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----~~~~~~i~~~~~s~  539 (1103)
                      +.+..       ....+.+|.+.|.++.|.+. ++..|++++.|++|++||+.++.....+     ..|...+.+++|++
T Consensus       137 ~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~-~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  215 (380)
T 3iz6_a          137 LSSQADRDGNMPVSRVLTGHKGYASSCQYVPD-QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINS  215 (380)
T ss_dssp             CCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSS-SSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECS
T ss_pred             CCCCccccCCccceeeccCCCcceEEEEEecC-CCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeec
Confidence            87542       34567899999999999764 3457999999999999999998887766     56778899999987


Q ss_pred             -CCCEEEEEecCCCCceeEEEEeCC-CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310          540 -NGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       540 -dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  617 (1103)
                       +++++++++.    ++.|++||++ .++.+..+.+|.   ..|.+++|+|++++|++|+.||+|++||+.+++.+..+.
T Consensus       216 ~~~~~l~sgs~----D~~v~~wd~~~~~~~~~~~~~h~---~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~  288 (380)
T 3iz6_a          216 LNANMFISGSC----DTTVRLWDLRITSRAVRTYHGHE---GDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYN  288 (380)
T ss_dssp             SSCCEEEEEET----TSCEEEEETTTTCCCCEEECCCS---SCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEEC
T ss_pred             CCCCEEEEEEC----CCeEEEEECCCCCcceEEECCcC---CCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEec
Confidence             8899999986    5669999998 557788888887   899999999999999999999999999999999988876


Q ss_pred             CCCC-----CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEec----cccccceeeeEEecCCceeeeeccCCce
Q 001310          618 AGGG-----LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA----GVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1103)
Q Consensus       618 ~~~~-----~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~~  688 (1103)
                      .+..     ...+.+++|+|+|+++++|+.||.|++||...++.+..+    .+|...|.+++++               
T Consensus       289 ~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s---------------  353 (380)
T 3iz6_a          289 REPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLS---------------  353 (380)
T ss_dssp             CCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEEC---------------
T ss_pred             ccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEEC---------------
Confidence            5422     234889999999999999999999999999988877666    6788899999987               


Q ss_pred             EecCCCCCCCccceeeccccccccccccc
Q 001310          689 SVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                             |+|.++++++.|++|++|++..
T Consensus       354 -------~dg~~l~sgs~D~~i~iW~~~~  375 (380)
T 3iz6_a          354 -------SDGSALCTGSWDKNLKIWAFSG  375 (380)
T ss_dssp             -------SSSSEEEEECTTSCEEEEECCS
T ss_pred             -------CCCCEEEEeeCCCCEEEEecCC
Confidence                   7899999999999999999763

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.7e-36  Score=348.43  Aligned_cols=357  Identities=10%  Similarity=0.166  Sum_probs=270.7

Q ss_pred             eEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEEC----CCCe------eEEEEcCCC----
Q 001310          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDM----NKVQ------LLTTIDAGG----  620 (1103)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~----~~~~------~~~~~~~~~----  620 (1103)
                      .+.+|+............|.   ..|.+++|+|+++ +|++++.||.|++|++    .+++      ....+....    
T Consensus        26 ~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  102 (425)
T 1r5m_A           26 IDSSDDLDGFVKILKEIVKL---DNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSA  102 (425)
T ss_dssp             --------CCCEECEEEEEC---SCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC-
T ss_pred             ccccccchhhhhheeeeecc---CceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccc
Confidence            35677776655544444444   7899999999999 9999999999999999    8887      455444311    


Q ss_pred             ----CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCC
Q 001310          621 ----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKE  696 (1103)
Q Consensus       621 ----~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  696 (1103)
                          +...|.+++|+|++++|++++.||.|++|+ .++..+..+..                                  
T Consensus       103 ~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~----------------------------------  147 (425)
T 1r5m_A          103 SSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNF----------------------------------  147 (425)
T ss_dssp             -----CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECC----------------------------------
T ss_pred             cccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccC----------------------------------
Confidence                234689999999999999999999999999 44433333322                                  


Q ss_pred             CCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccccc
Q 001310          697 DVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT  776 (1103)
Q Consensus       697 d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~  776 (1103)
                                                          |...|.+++|+|+++.+++++.+|.+++|++......       
T Consensus       148 ------------------------------------~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~-------  184 (425)
T 1r5m_A          148 ------------------------------------HRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVM-------  184 (425)
T ss_dssp             ------------------------------------CCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEE-------
T ss_pred             ------------------------------------CCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEE-------
Confidence                                                5567788888888888888888888888887554320       


Q ss_pred             ccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCC
Q 001310          777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN  856 (1103)
Q Consensus       777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~  856 (1103)
                          ..+................+....+.+++|++++.+++.+.++.|++||+.+++.+..+..|...|.+++|+| ++
T Consensus       185 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~-~~  259 (425)
T 1r5m_A          185 ----QHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFND-TN  259 (425)
T ss_dssp             ----EEECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEET-TT
T ss_pred             ----EEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECC-CC
Confidence                0111000000000000000123338899999998766666689999999999999999999999999999999 89


Q ss_pred             CEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCC
Q 001310          857 NVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA  936 (1103)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~  936 (1103)
                      ++|++++.||.|++||+.+++.+..+.+|...|.+++|+|++ ++++++.|+.|++||+.+++...     ....+.   
T Consensus       260 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~-----~~~~~~---  330 (425)
T 1r5m_A          260 KLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLA-----LSIVDG---  330 (425)
T ss_dssp             TEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEE-----EEECTT---
T ss_pred             CEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeE-----ecccCC---
Confidence            999999999999999999999999999999999999999999 99999999999999999876433     222333   


Q ss_pred             CCceEEEEcCCCCEEEEE-eCCeEEEEECCCce--------------------EEEEeeCCCCc--CeEEEEEccCCCEE
Q 001310          937 PSETHIQFHKDQTRFLLV-HETHLAIYEAEELT--------------------CLKQWFPISSV--PISQATFSCDCRMV  993 (1103)
Q Consensus       937 ~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~--------------------~~~~~~~~h~~--~v~~l~fs~dg~~l  993 (1103)
                      ..+.+++|+|++++|+++ .|+.|++||+.+++                    .+.. +.+|..  .|.+++|+||+++|
T Consensus       331 ~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l  409 (425)
T 1r5m_A          331 VPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYAS-YQSSQDNDYIFDLSWNCAGNKI  409 (425)
T ss_dssp             CCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEE-ECCTTCCCCEEEEEECTTSSEE
T ss_pred             ccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhh-hcCcccCCceEEEEccCCCceE
Confidence            279999999999999995 78999999999888                    6766 566755  99999999999999


Q ss_pred             EEEecCCcEEEEeCC
Q 001310          994 FTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       994 ~t~~~dg~v~vWd~~ 1008 (1103)
                      ++++.||.|++||++
T Consensus       410 ~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          410 SVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEESSSCCEEEECC
T ss_pred             EEEecCceEEEEeec
Confidence            999999999999986

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=100.00  E-value=8.5e-36  Score=328.02  Aligned_cols=297  Identities=21%  Similarity=0.276  Sum_probs=253.1

Q ss_pred             eccCCCccEEEEEECCCC-CEEEEEeCCCeEEEEEecCCCc--cccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310          391 LVRDPGVSVNRVVWSPDG-SLLGVAYSKHIVQLYAYHGGSD--ARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg-~~las~~~d~~i~iwd~~~~~~--~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i  467 (1103)
                      .+.+|.+.|.+++|+|++ ++|++|+.|++|++|++.+...  ......+.+|...|.+++|+|+++  +|++++.|++|
T Consensus        12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v   89 (319)
T 3frx_A           12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL   89 (319)
T ss_dssp             EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence            378999999999999965 8999999999999999976432  123446889999999999999999  89999999999


Q ss_pred             EEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccC------C
Q 001310          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSAN------G  541 (1103)
Q Consensus       468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~d------g  541 (1103)
                      ++||+.+++++..+.+|...|.+++|++  ++.+|++++.|++|++||++. .....+..|...+.+++++|.      +
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~~-~~~~~~~~h~~~v~~~~~~~~~~~~~~~  166 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIKG-QCLATLLGHNDWVSQVRVVPNEKADDDS  166 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETTS-CEEEEECCCSSCEEEEEECCC------C
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECCC-CeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence            9999999999999999999999999965  668999999999999999964 566678888999999999985      4


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC
Q 001310          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1103)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  621 (1103)
                      ..+++++.    ++.|++||+.+++....+.+|.   ..|.+++|+|++++|++++.||+|++||+.+++.+..+..+  
T Consensus       167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~---~~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--  237 (319)
T 3frx_A          167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHN---SNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ--  237 (319)
T ss_dssp             CEEEEEET----TSCEEEEETTTTEEEEEECCCC---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC--
T ss_pred             cEEEEEeC----CCEEEEEECCcchhheeecCCC---CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC--
Confidence            47888876    5669999999999999998888   89999999999999999999999999999999999888765  


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1103)
Q Consensus       622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1103)
                       ..+.+++|+|++.++++++.+ .+++|++.....+..+..+...                                   
T Consensus       238 -~~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~-----------------------------------  280 (319)
T 3frx_A          238 -DEVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAG-----------------------------------  280 (319)
T ss_dssp             -SCEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTT-----------------------------------
T ss_pred             -CcEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccc-----------------------------------
Confidence             358999999999999988865 5999998876544433211000                                   


Q ss_pred             eeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCC
Q 001310          702 ISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1103)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~  765 (1103)
                                                 ....+...+.+++|+|+|++|++++.||.|++|++.+
T Consensus       281 ---------------------------~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t  317 (319)
T 3frx_A          281 ---------------------------YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT  317 (319)
T ss_dssp             ---------------------------CCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred             ---------------------------cccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence                                       0012456788999999999999999999999999643

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=5.9e-36  Score=333.54  Aligned_cols=324  Identities=13%  Similarity=0.163  Sum_probs=273.6

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      |.++|.+++|||||+ +++++..++.+.+|+.........                   ..+|...|.+++|+|++++|+
T Consensus         8 ~~~~v~~~~~s~dg~-~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~~~~l~   67 (337)
T 1gxr_A            8 GSKPAYSFHVTADGQ-MQPVPFPPDALIGPGIPRHARQIN-------------------TLNHGEVVCAVTISNPTRHVY   67 (337)
T ss_dssp             EEEECCEEEECSSSC-EEECCCCTTSSSSTTCCSEEEEEE-------------------EECCSSCCCEEEECSSSSEEE
T ss_pred             cCCceeEEEECCCCC-EEEeecCCCcEeccccCCccccce-------------------eccCCCceEEEEEecCCcEEE
Confidence            456899999999998 577777767666665443322211                   347999999999999999999


Q ss_pred             EEeCCCeEEEEEecCCCccccceEec--cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc--eeEEeecCCCce
Q 001310          413 VAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPV  488 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~--~~~~~~~~~~~v  488 (1103)
                      +++ ||.|++||+.+++.......+.  +|...|.+++|+|+++  ++++++.|+.|++||+.+++  ....+..|...|
T Consensus        68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i  144 (337)
T 1gxr_A           68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC  144 (337)
T ss_dssp             EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred             EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence            998 9999999999887655554554  7999999999999999  89999999999999999887  667788999999


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      .+++|++  ++.++++++.||.|++||+.+.+....+..+...+.+++|+|+++++++++.    ++.|++||+.+++.+
T Consensus       145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~  218 (337)
T 1gxr_A          145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL  218 (337)
T ss_dssp             EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred             EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence            9999965  6789999999999999999999888889889999999999999999999976    667999999999988


Q ss_pred             EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1103)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i  648 (1103)
                      ..+.. .   ..+.+++|+|+++++++++.++.|++||+.+++... +..+  ...+.+++|+|+++++++++.||.|++
T Consensus       219 ~~~~~-~---~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~~  291 (337)
T 1gxr_A          219 QQHDF-T---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHLH--ESCVLSLKFAYCGKWFVSTGKDNLLNA  291 (337)
T ss_dssp             EEEEC-S---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECCC--SSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             eeecC-C---CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcCC--ccceeEEEECCCCCEEEEecCCCcEEE
Confidence            77753 3   689999999999999999999999999999887653 3333  456899999999999999999999999


Q ss_pred             EEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1103)
Q Consensus       649 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1103)
                      |++.+++.+...                                                                    
T Consensus       292 ~~~~~~~~~~~~--------------------------------------------------------------------  303 (337)
T 1gxr_A          292 WRTPYGASIFQS--------------------------------------------------------------------  303 (337)
T ss_dssp             EETTTCCEEEEE--------------------------------------------------------------------
T ss_pred             EECCCCeEEEEe--------------------------------------------------------------------
Confidence            999877544211                                                                    


Q ss_pred             cCccccccEEEEEEecCCcEEEEeecCceEEEeec
Q 001310          729 PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1103)
Q Consensus       729 ~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~  763 (1103)
                         .+...|.+++|+|+++.+++++.||.+++|++
T Consensus       304 ---~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~  335 (337)
T 1gxr_A          304 ---KESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             ---ECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             ---cCCCcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence               14466788889999998999999999999885

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=2.3e-37  Score=356.35  Aligned_cols=354  Identities=13%  Similarity=0.185  Sum_probs=274.5

Q ss_pred             CcCceEEEecCCCceEEEEE----------cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVG----------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasg----------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ...|.+++|||+|+.++++|          +.|+.|+|||+.+++....                 .....|...|.+++
T Consensus        12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~~   74 (416)
T 2pm9_A           12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDLD   74 (416)
T ss_dssp             EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEEE
T ss_pred             hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEEE
Confidence            34899999999998689999          8899999999998763211                 00235889999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCc-cccceEeccccccEEEEEEecC-CCceEEEEEcCCCceEEEeCCCCc-----
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGS-----  476 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~-----  476 (1103)
                      |+|++++||+++.||.|++||+.+... ......+.+|...|.+++|+|+ +.  +|++++.|+.|++||+.+++     
T Consensus        75 ~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~~  152 (416)
T 2pm9_A           75 WSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPSN  152 (416)
T ss_dssp             ECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTTT
T ss_pred             ECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCcccccc
Confidence            999999999999999999999987211 1233467899999999999998 66  79999999999999999887     


Q ss_pred             -eeEE---eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC------CccEEEEEEccCC-CEEE
Q 001310          477 -RTYS---FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANG-RRLF  545 (1103)
Q Consensus       477 -~~~~---~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~dg-~~l~  545 (1103)
                       ....   +.+|...|.+++|++. ++.++++++.||.|++||+++.+....+..+      ...+.+++|+|++ .+++
T Consensus       153 ~~~~~~~~~~~~~~~v~~~~~~~~-~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  231 (416)
T 2pm9_A          153 YTPLTPGQSMSSVDEVISLAWNQS-LAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVA  231 (416)
T ss_dssp             CCCBCCCCSCCSSCCCCEEEECSS-CTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEE
T ss_pred             ccccccccccCCCCCeeEEEeCCC-CCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEE
Confidence             3333   4679999999999764 2579999999999999999998888888776      6789999999997 5788


Q ss_pred             EEecCCCCceeEEEEeCCCC-eeEEEEe-cccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC
Q 001310          546 SCGTSKEGESFLVEWNESEG-AIKRTYQ-GLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL  622 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~-~~~~~~~-~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~  622 (1103)
                      +++.++ .++.|++||+.++ ..+..+. +|.   ..|.+++|+| +++++++++.||.|++||+.+++.+..+..|.  
T Consensus       232 ~~~~d~-~~~~i~~~d~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~--  305 (416)
T 2pm9_A          232 TATGSD-NDPSILIWDLRNANTPLQTLNQGHQ---KGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG--  305 (416)
T ss_dssp             EEECCS-SSCCCCEEETTSTTSCSBCCCSCCS---SCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS--
T ss_pred             EEECCC-CCceEEEEeCCCCCCCcEEeecCcc---CceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC--
Confidence            776532 1237999999986 5666666 666   8999999999 89999999999999999999999999988764  


Q ss_pred             CCCceEEEecCC-CEEEEEECCCeEEEEEcCCCCeeEeccc--cccceeeeEEecCCceee---------------eecc
Q 001310          623 PENPRICFNKNG-TLLAVIANENRIKILETPESNSVDAAGV--LSDNLRKLSVNPISTVTG---------------AGIA  684 (1103)
Q Consensus       623 ~~v~~v~~s~~g-~~l~~~~~dg~i~iw~~~~~~~~~~~~~--~~~~i~~~~~~~~~~~~~---------------~~~~  684 (1103)
                      ..|.+++|+|++ .++++++.|+.|++|++.+.........  .........+.+.+...+               ....
T Consensus       306 ~~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (416)
T 2pm9_A          306 NWCFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEP  385 (416)
T ss_dssp             SCCCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCC
T ss_pred             CceEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCC
Confidence            468999999999 8999999999999999987654332211  000000011111100000               0001


Q ss_pred             CCceEecCCCCCCCccceeeccccccccccccc
Q 001310          685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                      ...++|    +|||+++++++.|+.|++|++.+
T Consensus       386 ~~~~~~----s~dg~~la~~~~d~~v~~w~~~~  414 (416)
T 2pm9_A          386 SPAAHW----AFGGKLVQITPDGKGVSITNPKI  414 (416)
T ss_dssp             SCCCEE----ETTTEEECBCTTSSCBCCBCCCC
T ss_pred             ccceEE----eeCCeEEEEeCCCCeEEEEEecc
Confidence            113344    68999999999999999999874

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=8.5e-36  Score=332.78  Aligned_cols=303  Identities=18%  Similarity=0.261  Sum_probs=260.4

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      .+..+|+||++.|++|+|+|++..+||+|+.|++|+|||+.+++.....              ....+.+|...|.+++|
T Consensus        29 ~l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~--------------~~~~l~~h~~~V~~~~~   94 (340)
T 4aow_A           29 TLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGI--------------PQRALRGHSHFVSDVVI   94 (340)
T ss_dssp             EEEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEE--------------EEEEECCCSSCEEEEEE
T ss_pred             EEEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccce--------------eeEEEeCCCCCEEEEEE
Confidence            4556899999999999999985348999999999999999887644321              12237889999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee-EEeec
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEG  483 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~  483 (1103)
                      +|||++|++++.|+.|++|+...+....   ....+...+..+.+++++.  .+++++.|+.+++||+...... ....+
T Consensus        95 s~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~  169 (340)
T 4aow_A           95 SSDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDES  169 (340)
T ss_dssp             CTTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSS
T ss_pred             CCCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEecc
Confidence            9999999999999999999998875443   5567888899999999999  7999999999999998766544 44578


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      |...+..+++.+.....++++++.|+.|++||+.+.+....+..+...|.+++|+|++++|++++.    ++.|++||+.
T Consensus       170 ~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~  245 (340)
T 4aow_A          170 HSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLN  245 (340)
T ss_dssp             CSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETT
T ss_pred             ccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEec
Confidence            999999999988877789999999999999999999999999999999999999999999999986    6679999999


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-------CCCCCCceEEEecCCCE
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-------GGLPENPRICFNKNGTL  636 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-------~~~~~v~~v~~s~~g~~  636 (1103)
                      +++.+..+..+    ..+.++.|+|++. +++++.|+.|++||++++..+..+..+       .+...|.+++|+|+|++
T Consensus       246 ~~~~~~~~~~~----~~v~~~~~~~~~~-~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~  320 (340)
T 4aow_A          246 EGKHLYTLDGG----DIINALCFSPNRY-WLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQT  320 (340)
T ss_dssp             TTEEEEEEECS----SCEEEEEECSSSS-EEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSE
T ss_pred             cCceeeeecCC----ceEEeeecCCCCc-eeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCE
Confidence            99999888764    4799999999865 566777999999999998887766532       34557899999999999


Q ss_pred             EEEEECCCeEEEEEcCCCC
Q 001310          637 LAVIANENRIKILETPESN  655 (1103)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~  655 (1103)
                      |++|+.||.|++|++.+|.
T Consensus       321 l~sgs~Dg~v~iW~~~tGt  339 (340)
T 4aow_A          321 LFAGYTDNLVRVWQVTIGT  339 (340)
T ss_dssp             EEEEETTSCEEEEEEEC--
T ss_pred             EEEEeCCCEEEEEeCCCcC
Confidence            9999999999999998874

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=100.00  E-value=5.6e-36  Score=333.56  Aligned_cols=302  Identities=16%  Similarity=0.201  Sum_probs=241.6

Q ss_pred             cccc-cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310          732 VKAN-KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1103)
Q Consensus       732 ~~~~-~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  810 (1103)
                      +|.. .|..++|+|+|++|++++.|+.|++|++.....                      .....+ ..+|...|.+++|
T Consensus        13 ~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~----------------------~~~~~~-~~~h~~~v~~~~~   69 (345)
T 3fm0_A           13 AHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSW----------------------ICKSVL-SEGHQRTVRKVAW   69 (345)
T ss_dssp             CSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEE----------------------EEEEEE-CSSCSSCEEEEEE
T ss_pred             CCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcc----------------------eeeeee-ccccCCcEEEEEE
Confidence            3666 899999999999999999999999999754321                      000000 1258999999999


Q ss_pred             ecCCCEEEEEc-CCeEEEEEcCCc--eeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc---eeEEEecc
Q 001310          811 SKNDAYLFSAS-GGVISLYIVMTF--KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS---EVISKLEG  884 (1103)
Q Consensus       811 s~d~~~l~~~~-dg~i~iwd~~~~--~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~---~~~~~l~~  884 (1103)
                      +|++++|++++ |+++++||..++  +.+..+.+|...|.+++|+| ++++|++|+.|++|++||+.++   +++..+.+
T Consensus        70 sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp-~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~  148 (345)
T 3fm0_A           70 SPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAP-SGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS  148 (345)
T ss_dssp             CTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECT-TSSEEEEEETTSCEEEEEECTTSCEEEEEEECC
T ss_pred             CCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeC-CCCEEEEEECCCeEEEEECCCCCCeEEEEEecC
Confidence            99999999998 899999999866  46788999999999999999 8999999999999999999876   45677889


Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEE
Q 001310          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYE  963 (1103)
Q Consensus       885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd  963 (1103)
                      |...|.+++|+|++++|++++.|++|++||+..++..   +.....+|..   .|.+++|+|+|++|+++ .|++|++||
T Consensus       149 h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~---~~~~~~~h~~---~v~~l~~sp~g~~l~s~s~D~~v~iW~  222 (345)
T 3fm0_A          149 HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWV---CCATLEGHES---TVWSLAFDPSGQRLASCSDDRTVRIWR  222 (345)
T ss_dssp             CCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEE---EEEEECCCSS---CEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             cCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEE---EEEEecCCCC---ceEEEEECCCCCEEEEEeCCCeEEEec
Confidence            9999999999999999999999999999999876532   2344556654   89999999999999995 899999999


Q ss_pred             CCC---------------ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCC
Q 001310          964 AEE---------------LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSH 1028 (1103)
Q Consensus       964 ~~~---------------~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~ 1028 (1103)
                      ...               .+++..+...|...|.+++|++++..|++++.|+.|++|+..++.......   +       
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~---~-------  292 (345)
T 3fm0_A          223 QYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPT---F-------  292 (345)
T ss_dssp             EECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCC---E-------
T ss_pred             cccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceee---E-------
Confidence            632               234455444589999999999999999999999999999987653110000   0       


Q ss_pred             CceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCC
Q 001310         1029 DKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075 (1103)
Q Consensus      1029 ~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1075 (1103)
                      ........+|...|.  +++|+|+++.+|++|+.||+|++|++....
T Consensus       293 ~~~~~~~~~h~~~V~--~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~  337 (345)
T 3fm0_A          293 SLTAHLHQAHSQDVN--CVAWNPKEPGLLASCSDDGEVAFWKYQRPE  337 (345)
T ss_dssp             EEEEEETTSSSSCEE--EEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred             EEEeeecccccCcEe--EeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence            000001136777786  678999866799999999999999995443

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=100.00  E-value=2.2e-35  Score=324.50  Aligned_cols=291  Identities=20%  Similarity=0.287  Sum_probs=260.5

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      .+.+|...|.+++|+|++++||+|+.||.|++|++.+++...   .+.+|...|.+++|+|+++  +|++++.|+.|++|
T Consensus        18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw   92 (312)
T 4ery_A           18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW   92 (312)
T ss_dssp             EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred             EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence            378999999999999999999999999999999999886544   6789999999999999999  89999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      |+.+++++..+.+|...|.+++|++  ++.++++++.||.|++||+.+++....+..+..++.+++|+|+++++++++. 
T Consensus        93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-  169 (312)
T 4ery_A           93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY-  169 (312)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred             ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence            9999999999999999999999965  6689999999999999999999988899999999999999999999999986 


Q ss_pred             CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                         ++.|++||+.+++.+..+....  ...+..++|+|+++++++++.||.|++||+.+++.+..+..+..........+
T Consensus       170 ---d~~i~~wd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~  244 (312)
T 4ery_A          170 ---DGLCRIWDTASGQCLKTLIDDD--NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANF  244 (312)
T ss_dssp             ---TSCEEEEETTTCCEEEEECCSS--CCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEE
T ss_pred             ---CCcEEEEECCCCceeeEEeccC--CCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEE
Confidence               5669999999998887775443  46899999999999999999999999999999999999887754333334444


Q ss_pred             e-cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec--cc
Q 001310          631 N-KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE--AE  707 (1103)
Q Consensus       631 s-~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~--~d  707 (1103)
                      + +++.++++++.||.|++||+.+++.+..+.+|...+.+++++                      |++..+++++  .|
T Consensus       245 ~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----------------------p~~~~l~s~~~~~d  302 (312)
T 4ery_A          245 SVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACH----------------------PTENIIASAALEND  302 (312)
T ss_dssp             ECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------SSSSEEEEEECTTT
T ss_pred             EeCCCcEEEEECCCCEEEEEECCCchhhhhhhccCCcEEEEeec----------------------CcCCceEEEEccCC
Confidence            4 678999999999999999999999999999999999999997                      6777788776  68


Q ss_pred             ccccccccc
Q 001310          708 NKSEVEKPL  716 (1103)
Q Consensus       708 ~~i~~w~~~  716 (1103)
                      ++|++|+.+
T Consensus       303 ~~i~~W~~d  311 (312)
T 4ery_A          303 KTIKLWKSD  311 (312)
T ss_dssp             CCEEEEECC
T ss_pred             ccEEEecCC
Confidence            999999864

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=100.00  E-value=6.3e-35  Score=322.78  Aligned_cols=306  Identities=15%  Similarity=0.177  Sum_probs=229.7

Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC--eeEEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV--QLLTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      +.+.+..+.+|.   ..|.+++|+|+  +|++|+.|++|++||+..+  .....+....+...|.+++|+|++++|++++
T Consensus         3 ~~~~~~~~~~h~---~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s   77 (330)
T 2hes_X            3 SINLIKSLKLYK---EKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGS   77 (330)
T ss_dssp             CCEEEEEEECCS---SCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEE
T ss_pred             ccccceeeccCC---CceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEe
Confidence            455677888888   89999999987  8999999999999999875  4455553322456799999999999999999


Q ss_pred             CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCc
Q 001310          642 NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPS  721 (1103)
Q Consensus       642 ~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~  721 (1103)
                      .|++|++|+........ .                                                             
T Consensus        78 ~D~~v~iw~~~~~~~~~-~-------------------------------------------------------------   95 (330)
T 2hes_X           78 FDSTVSIWAKEESADRT-F-------------------------------------------------------------   95 (330)
T ss_dssp             TTSCEEEEEC--------C-------------------------------------------------------------
T ss_pred             CCCcEEEEEcccCcCcc-c-------------------------------------------------------------
Confidence            99999999975321000 0                                                             


Q ss_pred             cceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCC
Q 001310          722 ECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS  801 (1103)
Q Consensus       722 ~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  801 (1103)
                                             ..+ .        +..                                   +  .+|
T Consensus        96 -----------------------~~~-~--------~~~-----------------------------------~--~~h  106 (330)
T 2hes_X           96 -----------------------EMD-L--------LAI-----------------------------------I--EGH  106 (330)
T ss_dssp             -----------------------CCE-E--------EEE-----------------------------------E--C--
T ss_pred             -----------------------cce-e--------EEE-----------------------------------E--cCC
Confidence                                   000 0        000                                   0  036


Q ss_pred             CCCeeEEEEecCCCEEEEEc-CCeEEEEEcCC----ceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001310          802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1103)
                      ...|.+++|+|++++|++++ |++|++||+..    .+.+..+.+|...|++++|+| ++.+|++|+.|++|++||..++
T Consensus       107 ~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~  185 (330)
T 2hes_X          107 ENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDD  185 (330)
T ss_dssp             --CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETT
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCC
Confidence            67777777777777777776 67788888732    356677889999999999999 8999999999999999998876


Q ss_pred             --eeEEEeccCCCCEEEEEEccC--CCEEEEEeCCCeEEEEEcCCCce---eeeeeeecCCC-cccCCCCceEEEEcCCC
Q 001310          877 --EVISKLEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWDVDGWGI---QTCRSLQTPDG-VMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       877 --~~~~~l~~h~~~V~~l~~s~d--g~~l~s~s~dg~I~iwd~~~~~~---~~~~~~~~~~~-~~~~~~~v~~l~fs~dg  948 (1103)
                        +++..+.+|.+.|.+++|+|+  +.+|++++.|++|++||+..+..   ..........+ |.   ..|.+++|++++
T Consensus       186 ~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~v~~s~~~  262 (330)
T 2hes_X          186 DWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHK---RQVYNVAWGFNG  262 (330)
T ss_dssp             EEEEEEEECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCS---SCEEEEEECTTS
T ss_pred             CeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccc---cceEEEEEcCCC
Confidence              678899999999999999999  77999999999999999976421   11122333332 44   379999999877


Q ss_pred             CEEEEEeCCeEEEEECCCce--EEEEeeCCCCc-CeEEEEEcc--CCCEEEEEecCCcEEEEeCCC
Q 001310          949 TRFLLVHETHLAIYEAEELT--CLKQWFPISSV-PISQATFSC--DCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       949 ~~l~~~~d~~v~iwd~~~~~--~~~~~~~~h~~-~v~~l~fs~--dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      .++..+.|+.|++||..+++  .......+|.. .|.+++|+|  |+++|++|+.||+|++||+++
T Consensus       263 ~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~  328 (330)
T 2hes_X          263 LIASVGADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK  328 (330)
T ss_dssp             CEEEEETTSCEEEEEEETTEEEEEEEESCTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred             EEEEEeCCCEEEEEEcCCCceEEEeccccccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence            44444689999999998874  34444567876 899999999  789999999999999999865

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=100.00  E-value=7e-34  Score=364.57  Aligned_cols=529  Identities=10%  Similarity=0.026  Sum_probs=372.7

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC------CceE
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIK  468 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~  468 (1103)
                      +...+.+.+|||  +.||.++. +.|++|++.+++..    .+.+|...+.+++|||||+  .|+.++.+      ..|+
T Consensus        13 ~~~~~~~~~~S~--~~iaf~~~-~~l~~~~~~gg~~~----~lt~~~~~v~~~~~SPDG~--~la~~s~~~~~~~~~~i~   83 (1045)
T 1k32_A           13 MPNLLLNPDIHG--DRIIFVCC-DDLWEHDLKSGSTR----KIVSNLGVINNARFFPDGR--KIAIRVMRGSSLNTADLY   83 (1045)
T ss_dssp             CCCCCEEEEEET--TEEEEEET-TEEEEEETTTCCEE----EEECSSSEEEEEEECTTSS--EEEEEEEESTTCCEEEEE
T ss_pred             ccceEeCcEEeC--CEEEEEEC-CcEEEEECCCCcEE----EeeeCCCcccCeEECCCCC--EEEEEEeeccCCCCCeEE
Confidence            456789999995  58888765 68999999887532    5678999999999999999  56665432      4799


Q ss_pred             EEeCCCCceeEEeecCCCce-------EEEEeeecCCccEEEEEECC------CeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310          469 VWDAVTGSRTYSFEGHGAPV-------YSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1103)
Q Consensus       469 iwd~~~~~~~~~~~~~~~~v-------~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~  535 (1103)
                      +||+.+++ ...+..|...+       ..++|+|  ||+++++++.+      ..|..|++.++.... +...  ....+
T Consensus        84 ~~d~~~g~-~~~lt~~~~~~~~~~~~~~~~~~Sp--Dg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~-l~~~--~~~~~  157 (1045)
T 1k32_A           84 FYNGENGE-IKRITYFSGKSTGRRMFTDVAGFDP--DGNLIISTDAMQPFSSMTCLYRVENDGINFVP-LNLG--PATHI  157 (1045)
T ss_dssp             EEETTTTE-EEECCCCCEEEETTEECSEEEEECT--TCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE-CCSC--SCSEE
T ss_pred             EEECCCCC-eEEcccCCCcccccccccccccCCC--CCEEEEEECCcCCCcccceEEEEECCCCCeEE-ecCC--Cccee
Confidence            99988876 67788888888       8888865  66677777754      357777776655432 2222  23456


Q ss_pred             EEccCCCEEEEEecCCC--------CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310          536 AYSANGRRLFSCGTSKE--------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~--------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  607 (1103)
                      +|+| | ++++++.+.+        +.....+|....+.....+.+|.   ..+.++.|+++ ..+++++.++.+.+|.+
T Consensus       158 ~~sp-G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~---~~v~~~~~s~d-~l~~~~~~dg~~~l~~~  231 (1045)
T 1k32_A          158 LFAD-G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMS---THVSSPVIVGH-RIYFITDIDGFGQIYST  231 (1045)
T ss_dssp             EEET-T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCS---SCCEEEEEETT-EEEEEECTTSSCEEEEE
T ss_pred             eeCC-C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCC---CcccceEEeCC-EEEEEEeccCceEEEEE
Confidence            7999 8 7777643211        12224444332223445556666   88999999988 56667778899999976


Q ss_pred             CC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCC
Q 001310          608 NK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1103)
Q Consensus       608 ~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  686 (1103)
                      .. +.....+..+.   .+...+|+|||++++.+. ++.|.+|+..... +..+..+...                    
T Consensus       232 ~~~g~~~~~l~~~~---~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~~-l~~l~~~~~~--------------------  286 (1045)
T 1k32_A          232 DLDGKDLRKHTSFT---DYYPRHLNTDGRRILFSK-GGSIYIFNPDTEK-IEKIEIGDLE--------------------  286 (1045)
T ss_dssp             ETTSCSCEECCCCC---SSCEEEEEESSSCEEEEE-TTEEEEECTTTCC-EEECCCCCCC--------------------
T ss_pred             eCCCCcceEecCCC---CcceeeEcCCCCEEEEEe-CCEEEEecCCceE-eeeeccCccc--------------------
Confidence            53 44445554443   367789999999998885 7899999984332 2222110000                    


Q ss_pred             ceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEe-cCCcEEEEeecCceEEEeecCC
Q 001310          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN-NGGQAIFALASNGVHLMWRWPR  765 (1103)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~g~~l~~~~~dg~i~vw~~~~  765 (1103)
                                           ..             ...     ..+...+.+++|+ |||+.+++++ ++.+.+|++..
T Consensus       287 ---------------------~~-------------~~~-----~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~  326 (1045)
T 1k32_A          287 ---------------------SP-------------EDR-----IISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSG  326 (1045)
T ss_dssp             ---------------------BC-------------CSE-----EEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTS
T ss_pred             ---------------------cc-------------ccc-----cccccccceeeecCCCCCEEEEEE-cCEEEEEcCCC
Confidence                                 00             000     0144567889999 9999888887 77888887543


Q ss_pred             CccccccccccccCCeeecCCCCCceeeccCCCCCCCC-CeeEEEEecCCCEEEEEcC-CeEE-EEEcCCceeeEEecCC
Q 001310          766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQE-AVPCFALSKNDAYLFSASG-GVIS-LYIVMTFKTILTIMPP  842 (1103)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~l~~s~d~~~l~~~~d-g~i~-iwd~~~~~~~~~~~~~  842 (1103)
                      ..                       ...  +.  .+.. .+..++|+ ||+.++++++ +.+. +|++.+++.. .+..+
T Consensus       327 ~~-----------------------~~~--~~--~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~~  377 (1045)
T 1k32_A          327 TY-----------------------VLK--VP--EPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEEN  377 (1045)
T ss_dssp             SB-----------------------EEE--CS--CCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCCC
T ss_pred             Cc-----------------------eEE--cc--CCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecCC
Confidence            21                       111  11  2555 78899999 9999998875 6687 8899876654 44477


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC----------eEEE
Q 001310          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA----------QIFV  912 (1103)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg----------~I~i  912 (1103)
                      ...+..++|+| |+++|++++.++.|++||+.+++....+.+|.+.+.+++|||||++|++++.++          .|++
T Consensus       378 ~~~~~~~~~Sp-DG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l  456 (1045)
T 1k32_A          378 LGNVFAMGVDR-NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV  456 (1045)
T ss_dssp             CCSEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred             ccceeeeEECC-CCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence            78999999999 899999999999999999999998888878999999999999999999887654          8999


Q ss_pred             EEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceE----------------------
Q 001310          913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC----------------------  969 (1103)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~----------------------  969 (1103)
                      ||+.+++..      ....+..   .+..++|+|||++|+.+ .++...+|+......                      
T Consensus       457 ~d~~~g~~~------~l~~~~~---~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  527 (1045)
T 1k32_A          457 YDMEGRKIF------AATTENS---HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTK  527 (1045)
T ss_dssp             EETTTTEEE------ECSCSSS---BEEEEEECTTSCEEEEEESCCCCCEECSSSSCEECCSCBEEEEEESSTTCCCGGG
T ss_pred             EECCCCcEE------EeeCCCc---ccCCceEcCCCCEEEEEecccCCcCcchhccccccccCceeEEEEeCCCCCCccc
Confidence            999986621      1222222   57789999999999885 445555555432211                      


Q ss_pred             --------------------EEEeeCCCCcCeEEEEEccCCCEEEE-------------EecCCcEEEEeCCCceeEEee
Q 001310          970 --------------------LKQWFPISSVPISQATFSCDCRMVFT-------------SFVDGTLSIHEASNLEVQCRI 1016 (1103)
Q Consensus       970 --------------------~~~~~~~h~~~v~~l~fs~dg~~l~t-------------~~~dg~v~vWd~~~~~~~~~~ 1016 (1103)
                                          ....+..|...+..++|+|||+++++             ...+..|.+||+.+++.....
T Consensus       528 ~~~~~~~~~~~~~d~~g~~~~~~~l~~~~~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l~  607 (1045)
T 1k32_A          528 LVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVK  607 (1045)
T ss_dssp             CCCGGGSCCCCCCCCTTGGGGCEECSCCCBCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEEE
T ss_pred             cCcCccccccccccccCHhHceEEcCCCCCChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEee
Confidence                                00112346678899999999988875             123457889999888753221


Q ss_pred             ccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCC
Q 001310         1017 LSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPG 1075 (1103)
Q Consensus      1017 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~ 1075 (1103)
                      .                       .+  ..++++|| |..|++++.+ .|++|++....
T Consensus       608 ~-----------------------~v--~~~~~S~D-G~~l~~~~~~-~i~~~d~~~~~  639 (1045)
T 1k32_A          608 N-----------------------NL--TDLRLSAD-RKTVMVRKDD-GKIYTFPLEKP  639 (1045)
T ss_dssp             E-----------------------EE--EEEEECTT-SCEEEEEETT-SCEEEEESSCT
T ss_pred             c-----------------------Cc--ceEEECCC-CCEEEEEcCC-cEEEEeCccCc
Confidence            1                       13  35689999 8888888766 79999995443

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=100.00  E-value=4.3e-35  Score=332.95  Aligned_cols=293  Identities=17%  Similarity=0.214  Sum_probs=248.3

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEecccc------------------ccEEEEEEecCCCc
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV------------------GNVNDLAFSAPCKQ  455 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~------------------~~v~~~~~s~d~~~  455 (1103)
                      +|...|.+++|||||++||+|+ ++++++|++.+++.+.   .+.+|.                  ..|.+++|+|||+ 
T Consensus        62 ~h~~~V~~v~fspdg~~la~g~-~~~v~i~~~~~g~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~-  136 (393)
T 1erj_A           62 DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVA---RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK-  136 (393)
T ss_dssp             ECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEE---EECC-----------------CCCCBEEEEEECTTSS-
T ss_pred             CCCCEEEEEEECCCCCEEEEEc-CCcEEEEEecCCCEEE---EecCccccccccccccccccCCCceeEEEEEECCCCC-
Confidence            5999999999999999999986 6789999999987554   344432                  2499999999999 


Q ss_pred             eEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310          456 ISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1103)
Q Consensus       456 ~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  535 (1103)
                       +|++|+.|++|++||+.+++.+..+.+|...|.+++|++  ++.+|++++.|++|++||+.+++....+. +...+.++
T Consensus       137 -~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p--~~~~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~~v~~~  212 (393)
T 1erj_A          137 -FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP--SGDKLVSGSGDRTVRIWDLRTGQCSLTLS-IEDGVTTV  212 (393)
T ss_dssp             -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEE
T ss_pred             -EEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcC--CCCEEEEecCCCcEEEEECCCCeeEEEEE-cCCCcEEE
Confidence             899999999999999999999999999999999999965  66899999999999999999888776665 44578999


Q ss_pred             EEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecc----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001310          536 AYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1103)
Q Consensus       536 ~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  610 (1103)
                      +|+| +++++++++.    ++.|++||+.+++.+..+...    ..|...|.+++|+|++++|++++.|++|++||+.+.
T Consensus       213 ~~~~~~~~~l~~~s~----d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~  288 (393)
T 1erj_A          213 AVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNA  288 (393)
T ss_dssp             EECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---
T ss_pred             EEECCCCCEEEEEcC----CCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCC
Confidence            9999 8999999986    566999999999888776321    123389999999999999999999999999999764


Q ss_pred             e------------eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCce
Q 001310          611 Q------------LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTV  678 (1103)
Q Consensus       611 ~------------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  678 (1103)
                      .            +...+..|  ...|.+++|+|++++|++++.|+.|++||..+++.+..+.+|...|.++++++....
T Consensus       289 ~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~~v~~v~~~~~~~~  366 (393)
T 1erj_A          289 NNKSDSKTPNSGTCEVTYIGH--KDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSL  366 (393)
T ss_dssp             ------------CEEEEEECC--SSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCTT
T ss_pred             CCcccccCCCCCcceEEEecc--cCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCCCEEEEEecCCcCc
Confidence            3            33445444  456899999999999999999999999999999999999999999999999864322


Q ss_pred             eeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310          679 TGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       679 ~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                                      .|++..+++++.|++|++|++..
T Consensus       367 ----------------~p~~~~l~sgs~Dg~i~iW~~~~  389 (393)
T 1erj_A          367 ----------------GPEYNVFATGSGDCKARIWKYKK  389 (393)
T ss_dssp             ----------------CTTCEEEEEEETTSEEEEEEEEE
T ss_pred             ----------------CCCCCEEEEECCCCcEEECcccc
Confidence                            47899999999999999999763

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=1.8e-35  Score=340.79  Aligned_cols=346  Identities=12%  Similarity=0.115  Sum_probs=281.8

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  477 (1103)
                      .+++++|+|+|++|++++.|+.|++||+.+++...   .+..| ..+....|+++++  +|++++.|+.|++||+.+++.
T Consensus        58 ~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~~  131 (420)
T 3vl1_A           58 AGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNLQ  131 (420)
T ss_dssp             CCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCEE
T ss_pred             cccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcce
Confidence            45578999999999999999999999999876554   34455 4455667899999  899999999999999999999


Q ss_pred             eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                      ...+.+|...|.+++|++  ++.+|++++.||.|++||+.+++....+..|...|.+++|+|++++|++++.    ++.|
T Consensus       132 ~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~v  205 (420)
T 3vl1_A          132 REIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGTI  205 (420)
T ss_dssp             EEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSCE
T ss_pred             eeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCcE
Confidence            998899999999999965  6679999999999999999999999999999999999999999999999986    5669


Q ss_pred             EEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE
Q 001310          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL  637 (1103)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l  637 (1103)
                      ++||+.+++.+..+..+..+...+.+++|.+.+...                     ...  .+...+.+++|+|+++++
T Consensus       206 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~--~~~~~v~~~~~s~~~~~l  262 (420)
T 3vl1_A          206 RLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHE--ISTSKKNNLEFGTYGKYV  262 (420)
T ss_dssp             EEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGG--GCCCCCCTTCSSCTTEEE
T ss_pred             EEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eee--cccCcccceEEcCCCCEE
Confidence            999999999999999876666889999887764322                     011  112457889999999999


Q ss_pred             EEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310          638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       638 ~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                      ++++.||.|++||+.+++....+.                                                        
T Consensus       263 ~~~~~dg~i~i~d~~~~~~~~~~~--------------------------------------------------------  286 (420)
T 3vl1_A          263 IAGHVSGVITVHNVFSKEQTIQLP--------------------------------------------------------  286 (420)
T ss_dssp             EEEETTSCEEEEETTTCCEEEEEC--------------------------------------------------------
T ss_pred             EEEcCCCeEEEEECCCCceeEEcc--------------------------------------------------------
Confidence            999999999999987653221110                                                        


Q ss_pred             cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCC
Q 001310          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  797 (1103)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1103)
                                                                                                      
T Consensus       287 --------------------------------------------------------------------------------  286 (420)
T 3vl1_A          287 --------------------------------------------------------------------------------  286 (420)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCeeEEEEecCCC-EEEEEc-CCeEEEEEcCCcee-eEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001310          798 DSNSQEAVPCFALSKNDA-YLFSAS-GGVISLYIVMTFKT-ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1103)
Q Consensus       798 ~~~~~~~v~~l~~s~d~~-~l~~~~-dg~i~iwd~~~~~~-~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1103)
                       .+|...|.+++|+|+++ +|++++ ||.|++||+.+++. +..+.. |...+.++.+.  ++++|++++.||.|++|++
T Consensus       287 -~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~l~s~~~d~~v~iw~~  363 (420)
T 3vl1_A          287 -SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFA--AGALFVSSGFDTSIKLDII  363 (420)
T ss_dssp             -CTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEEE--TTEEEEEETTTEEEEEEEE
T ss_pred             -cccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEeC--CCCEEEEecCCccEEEEec
Confidence             01556677777777777 777766 67788888877643 566655 56678888665  5679999999999999999


Q ss_pred             CCc---------eeEEEeccCCCCEEEEEEccCCC---EEEEEeCCCeEEEEEcCC
Q 001310          874 RSS---------EVISKLEGHSKRVTGLVFSDALN---ILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       874 ~~~---------~~~~~l~~h~~~V~~l~~s~dg~---~l~s~s~dg~I~iwd~~~  917 (1103)
                      .+.         .....+.+|.+.|.+++|+|+++   .+++++.+|.+.+|+++.
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          364 SDPESERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             CCTTCCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             cCCCCCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence            873         22344667899999999999999   788888999999999875

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.6e-36  Score=345.31  Aligned_cols=383  Identities=12%  Similarity=0.139  Sum_probs=285.9

Q ss_pred             EecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEEEEEeCCCe
Q 001310          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGVAYSKHI  419 (1103)
Q Consensus       341 ~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~las~~~d~~  419 (1103)
                      .|+|+++ .+++++      .|+ .+++.+..                  +..+|.+.|++++|+| ++++||+|+.||+
T Consensus        34 ~f~~~~~-~~~~~~------~w~-~~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~   87 (437)
T 3gre_A           34 EFGPIQE-IVRSPN------MGN-LRGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV   87 (437)
T ss_dssp             GGCCCCC-CCCCCC------GGG-CCCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred             hcCCccc-cccccc------ccc-ccceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence            5889998 456544      377 44555543                  1378999999999999 9999999999999


Q ss_pred             EEEEEecC---CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC---CCceeEEeecCCCceEEEEe
Q 001310          420 VQLYAYHG---GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCP  493 (1103)
Q Consensus       420 i~iwd~~~---~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~~  493 (1103)
                      |+|||+.+   +........+ +|...|.+++|+|+++  +|++++.||+|++||+.   +++.+..+.+|  .+..+.+
T Consensus        88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~  162 (437)
T 3gre_A           88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL  162 (437)
T ss_dssp             EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred             EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence            99999987   5433333333 5999999999999999  89999999999999994   77777777766  6677766


Q ss_pred             eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE--EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA--YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~--~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      ++..                              +...+.++.  +++++.++++++.    ++.|++||+.+++.+..+
T Consensus       163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~  208 (437)
T 3gre_A          163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQII  208 (437)
T ss_dssp             GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEE
T ss_pred             cCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEE
Confidence            5421                              122334444  6789999999986    667999999999999999


Q ss_pred             ec--ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe----cCCCEEEEEECCCe
Q 001310          572 QG--LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN----KNGTLLAVIANENR  645 (1103)
Q Consensus       572 ~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~g~~l~~~~~dg~  645 (1103)
                      .+  |.   ..|.+++|+|+++++++|+.||.|++||+++++.+..+..... ..|.+++|+    |++.+|++++.|+.
T Consensus       209 ~~~~h~---~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~s~~~~~l~s~~~dg~  284 (437)
T 3gre_A          209 ENSPRH---GAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDH-APITHVEVCQFYGKNSVIVVGGSSKTF  284 (437)
T ss_dssp             ECCGGG---CCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTTC-EEEEEEEECTTTCTTEEEEEEESTTEE
T ss_pred             ccCCCC---CceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCCC-CceEEEEeccccCCCccEEEEEcCCCc
Confidence            88  55   8999999999999999999999999999999999988863322 368899655    56889999999999


Q ss_pred             EEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1103)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1103)
                      |++||+.+++.+..+.++...+..+.++                                                    
T Consensus       285 i~iwd~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------  312 (437)
T 3gre_A          285 LTIWNFVKGHCQYAFINSDEQPSMEHFL----------------------------------------------------  312 (437)
T ss_dssp             EEEEETTTTEEEEEEESSSSCCCGGGGS----------------------------------------------------
T ss_pred             EEEEEcCCCcEEEEEEcCCCCCccceec----------------------------------------------------
Confidence            9999999988877776655544333333                                                    


Q ss_pred             eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1103)
Q Consensus       726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  805 (1103)
                                        |+++.+    .+.                                      .+....|...|
T Consensus       313 ------------------~~~~~l----~~~--------------------------------------~~~~~~~~~~v  332 (437)
T 3gre_A          313 ------------------PIEKGL----EEL--------------------------------------NFCGIRSLNAL  332 (437)
T ss_dssp             ------------------CBCSSG----GGC--------------------------------------CCCCCCSGGGG
T ss_pred             ------------------cccccc----ccc--------------------------------------eecccccCCce
Confidence                              221111    000                                      00001277889


Q ss_pred             eEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCC---CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001310          806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS---PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~---~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1103)
                      .+++|+ ++++|++++ |+.|++||+.+++....+.+|.   ..+....+++ ...+++..        |+...+.....
T Consensus       333 ~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~  402 (437)
T 3gre_A          333 STISVS-NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDD  402 (437)
T ss_dssp             CCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC---------
T ss_pred             EEEEEC-CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCc
Confidence            999999 788899887 8999999999999999888754   3455666776 55444433        33344455566


Q ss_pred             eccCCCCEEEEEEccC--CCEEEEEeCCCeEEEEE
Q 001310          882 LEGHSKRVTGLVFSDA--LNILVSSGGDAQIFVWD  914 (1103)
Q Consensus       882 l~~h~~~V~~l~~s~d--g~~l~s~s~dg~I~iwd  914 (1103)
                      +..|.+.|++++|+++  +.+|++++.||.|+||+
T Consensus       403 ~~~h~~~I~~i~~~~~~~~~~l~s~~~dG~I~iw~  437 (437)
T 3gre_A          403 SLYHHDIINSISTCEVDETPLLVACDNSGLIGIFQ  437 (437)
T ss_dssp             ----CCCEEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred             ccccccceeeEeeeccCCceEEEEEcCCceEEEeC
Confidence            6779999999999998  78999999999999995

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-36  Score=349.12  Aligned_cols=337  Identities=14%  Similarity=0.223  Sum_probs=265.7

Q ss_pred             CceEEEEEcCCCC-EEEEE----------eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310          579 NSVSVVHFDTAKD-QILAA----------GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1103)
Q Consensus       579 ~~v~~~~~~~~~~-~l~~~----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~  647 (1103)
                      ..+.+++|+|+++ +++++          +.|+.|++||+.++.....+....+...|.+++|+|++++|++++.||.|+
T Consensus        13 ~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~   92 (416)
T 2pm9_A           13 SRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLE   92 (416)
T ss_dssp             EESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEE
T ss_pred             hhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEE
Confidence            3578899999987 88888          889999999999876332222222345699999999999999999999999


Q ss_pred             EEEcCCC----CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccc
Q 001310          648 ILETPES----NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC  723 (1103)
Q Consensus       648 iw~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~  723 (1103)
                      +|++...    +.+..+.                                                              
T Consensus        93 vw~~~~~~~~~~~~~~~~--------------------------------------------------------------  110 (416)
T 2pm9_A           93 LYSTNEANNAINSMARFS--------------------------------------------------------------  110 (416)
T ss_dssp             EECCSSTTSCCCEEEECC--------------------------------------------------------------
T ss_pred             Eeecccccccccchhhcc--------------------------------------------------------------
Confidence            9998862    1222222                                                              


Q ss_pred             eeeeccCccccccEEEEEEecC-CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCC
Q 001310          724 QSLLLPSKVKANKISRLTYNNG-GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQ  802 (1103)
Q Consensus       724 ~~~~~~~~~~~~~i~~~~~s~~-g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  802 (1103)
                              +|...|.+++|+|+ +..+++++.||.|++|++..........       .         .... ....+|.
T Consensus       111 --------~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-------~---------~~~~-~~~~~~~  165 (416)
T 2pm9_A          111 --------NHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNY-------T---------PLTP-GQSMSSV  165 (416)
T ss_dssp             --------CSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTC-------C---------CBCC-CCSCCSS
T ss_pred             --------CCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccc-------c---------cccc-ccccCCC
Confidence                    25667788888887 7888888888999988876543100000       0         0000 0012488


Q ss_pred             CCeeEEEEecC-CCEEEEEc-CCeEEEEEcCCceeeEEecCC------CCCeeEEEEcCCCCCEEEEEeCCC---eEEEE
Q 001310          803 EAVPCFALSKN-DAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGMDDS---TILIY  871 (1103)
Q Consensus       803 ~~v~~l~~s~d-~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~~dg---~v~iw  871 (1103)
                      ..|.+++|+|+ +.++++++ |+.|++||+.+++.+..+..+      ...|++++|+|++..++++++.|+   .|++|
T Consensus       166 ~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~  245 (416)
T 2pm9_A          166 DEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIW  245 (416)
T ss_dssp             CCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEE
T ss_pred             CCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEE
Confidence            89999999999 78899887 799999999999999988876      789999999994457999999999   99999


Q ss_pred             EcCCc-eeEEEec-cCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310          872 NARSS-EVISKLE-GHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       872 d~~~~-~~~~~l~-~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg  948 (1103)
                      |+.++ +.+..+. +|...|.+++|+| ++++|++++.|+.|++||+.+++..     ....+|..   .|.+++|+|++
T Consensus       246 d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~-----~~~~~~~~---~v~~~~~s~~~  317 (416)
T 2pm9_A          246 DLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQL-----SQFPARGN---WCFKTKFAPEA  317 (416)
T ss_dssp             ETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEE-----EEEECSSS---CCCCEEECTTC
T ss_pred             eCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccc-----eeecCCCC---ceEEEEECCCC
Confidence            99986 6777888 8999999999999 9999999999999999999987633     33334443   79999999999


Q ss_pred             -CEEEEE-eCCeEEEEECCCceEEEEe----------------------------------eCCCCcCeEEEEEccCCCE
Q 001310          949 -TRFLLV-HETHLAIYEAEELTCLKQW----------------------------------FPISSVPISQATFSCDCRM  992 (1103)
Q Consensus       949 -~~l~~~-~d~~v~iwd~~~~~~~~~~----------------------------------~~~h~~~v~~l~fs~dg~~  992 (1103)
                       .+|+++ .|+.|++||+.++......                                  ...|..++.+++|+|||++
T Consensus       318 ~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~  397 (416)
T 2pm9_A          318 PDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWAFGGKL  397 (416)
T ss_dssp             TTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEETTTEE
T ss_pred             CCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEeeCCeE
Confidence             788884 8999999999876643221                                  0115778889999999999


Q ss_pred             EEEEecCCcEEEEeCCCc
Q 001310          993 VFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       993 l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      |++++.|++|+||++.+.
T Consensus       398 la~~~~d~~v~~w~~~~~  415 (416)
T 2pm9_A          398 VQITPDGKGVSITNPKIS  415 (416)
T ss_dssp             ECBCTTSSCBCCBCCCCC
T ss_pred             EEEeCCCCeEEEEEeccC
Confidence            999999999999999875

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=100.00  E-value=9.1e-36  Score=343.36  Aligned_cols=351  Identities=12%  Similarity=0.106  Sum_probs=284.0

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ..+++++|+|+|+ +|++|+.|+.|++||+.+++....                   +..| ..+...+|+|++++||+|
T Consensus        57 ~~~~~~~~s~~g~-~l~~~~~d~~v~i~d~~~~~~~~~-------------------~~~~-~~~~~~~~~~~~~~l~~~  115 (420)
T 3vl1_A           57 DAGKGNTFEKVGS-HLYKARLDGHDFLFNTIIRDGSKM-------------------LKRA-DYTAVDTAKLQMRRFILG  115 (420)
T ss_dssp             BCCTTCEEEEEET-TEEEEEETTEEEEEECCSEETTTT-------------------SCSC-CEEEEEEECSSSCEEEEE
T ss_pred             ccccceeeeecCC-eEEEEEcCCcEEEEEecccceeeE-------------------EecC-CceEEEEEecCCCEEEEE
Confidence            3456899999999 589999999999999988765532                   3344 455566889999999999


Q ss_pred             eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1103)
                      +.||.|++||+.+++...   .+.+|...|.+++|+|+++  +|++++.|++|++||+.+++.+..+.+|...|.+++|+
T Consensus       116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~  190 (420)
T 3vl1_A          116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII  190 (420)
T ss_dssp             ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred             ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence            999999999999876543   5679999999999999999  89999999999999999999999999999999999996


Q ss_pred             ecCCccEEEEEECCCeEEEEEcCCCCeeEEecC---CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDA---PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~---~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      +  ++.+|++++.||.|++||+.+++....+..   +...+.++++.+++...                         ..
T Consensus       191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-------------------------~~  243 (420)
T 3vl1_A          191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ-------------------------LH  243 (420)
T ss_dssp             T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS-------------------------CG
T ss_pred             C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce-------------------------ee
Confidence            5  678999999999999999999888877764   44577777776653221                         01


Q ss_pred             ecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEE
Q 001310          572 QGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILE  650 (1103)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iw~  650 (1103)
                      ..+   ...+.+++|+|+++++++++.||.|++||+.+++.+..+... +...+.+++|+|+++ +|++++.||.|++||
T Consensus       244 ~~~---~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd  319 (420)
T 3vl1_A          244 EIS---TSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSK-FTCSCNSLTVDGNNANYIYAGYENGMLAQWD  319 (420)
T ss_dssp             GGC---CCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCT-TSSCEEEEEECSSCTTEEEEEETTSEEEEEE
T ss_pred             ecc---cCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccc-cCCCceeEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            112   267888899999999999999999999999999888777542 235689999999999 999999999999999


Q ss_pred             cCCCCe-eEeccc-cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceee--
Q 001310          651 TPESNS-VDAAGV-LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL--  726 (1103)
Q Consensus       651 ~~~~~~-~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~--  726 (1103)
                      +.+++. +..+.. +...+.++.+                       ++++++++++.|+.+++|++...........  
T Consensus       320 ~~~~~~~~~~~~~~~~~~v~~~~~-----------------------~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~  376 (420)
T 3vl1_A          320 LRSPECPVGEFLINEGTPINNVYF-----------------------AAGALFVSSGFDTSIKLDIISDPESERPAIEFE  376 (420)
T ss_dssp             TTCTTSCSEEEEESTTSCEEEEEE-----------------------ETTEEEEEETTTEEEEEEEECCTTCCSCEECTT
T ss_pred             cCCCcCchhhhhccCCCCceEEEe-----------------------CCCCEEEEecCCccEEEEeccCCCCCccceecc
Confidence            998743 566665 5555665543                       4577899999999999999875322211100  


Q ss_pred             -eccCccccccEEEEEEecCCc---EEEEeecCceEEEeecCC
Q 001310          727 -LLPSKVKANKISRLTYNNGGQ---AIFALASNGVHLMWRWPR  765 (1103)
Q Consensus       727 -~~~~~~~~~~i~~~~~s~~g~---~l~~~~~dg~i~vw~~~~  765 (1103)
                       ......+...|.+++|+|+++   .+++++.+|.+.+|++..
T Consensus       377 ~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~  419 (420)
T 3vl1_A          377 TPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN  419 (420)
T ss_dssp             SCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred             CccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence             001134778899999999999   899999999999998653

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=100.00  E-value=2.9e-34  Score=319.83  Aligned_cols=322  Identities=14%  Similarity=0.136  Sum_probs=264.1

Q ss_pred             cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310          439 AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1103)
Q Consensus       439 ~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  518 (1103)
                      .|..+|.+++|+|||+  .++++..++.+.+|+...........+|...|.+++|++  ++.++++++ ||.|++||+.+
T Consensus         7 ~~~~~v~~~~~s~dg~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~~~~-dg~i~iw~~~~   81 (337)
T 1gxr_A            7 MGSKPAYSFHVTADGQ--MQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISN--PTRHVYTGG-KGCVKVWDISH   81 (337)
T ss_dssp             EEEEECCEEEECSSSC--EEECCCCTTSSSSTTCCSEEEEEEEECCSSCCCEEEECS--SSSEEEEEC-BSEEEEEETTS
T ss_pred             ccCCceeEEEECCCCC--EEEeecCCCcEeccccCCccccceeccCCCceEEEEEec--CCcEEEEcC-CCeEEEEECCC
Confidence            3567899999999999  787887777777777666555555568999999999964  678999998 99999999987


Q ss_pred             CCee---EEec--CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCC
Q 001310          519 LGAR---VDYD--APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKD  591 (1103)
Q Consensus       519 ~~~~---~~~~--~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~  591 (1103)
                      ....   ..+.  .+...+.+++|+|+++++++++.    ++.|++||+.+++  ....+..+.   ..+.+++|+|+++
T Consensus        82 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~---~~i~~~~~~~~~~  154 (337)
T 1gxr_A           82 PGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGE----ASTLSIWDLAAPTPRIKAELTSSA---PACYALAISPDSK  154 (337)
T ss_dssp             TTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEES----SSEEEEEECCCC--EEEEEEECSS---SCEEEEEECTTSS
T ss_pred             CCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCCcceeeecccCC---CceEEEEECCCCC
Confidence            6532   2222  67889999999999999999876    5679999999887  555666666   8899999999999


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeE
Q 001310          592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1103)
Q Consensus       592 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~  671 (1103)
                      ++++++.||.|++||+.+++.+..+..+.  ..+.+++|+|+++++++++.|+.|++||+.+++.+..+           
T Consensus       155 ~l~~~~~dg~v~~~d~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~-----------  221 (337)
T 1gxr_A          155 VCFSCCSDGNIAVWDLHNQTLVRQFQGHT--DGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQH-----------  221 (337)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE-----------
T ss_pred             EEEEEeCCCcEEEEeCCCCceeeeeeccc--CceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeee-----------
Confidence            99999999999999999999998887653  46899999999999999999999999998765322110           


Q ss_pred             EecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEE
Q 001310          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA  751 (1103)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  751 (1103)
                                                                                                      
T Consensus       222 --------------------------------------------------------------------------------  221 (337)
T 1gxr_A          222 --------------------------------------------------------------------------------  221 (337)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEc
Q 001310          752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV  830 (1103)
Q Consensus       752 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~  830 (1103)
                                                                      .+...+.+++|+|+++++++++ ++.|++||+
T Consensus       222 ------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~  253 (337)
T 1gxr_A          222 ------------------------------------------------DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV  253 (337)
T ss_dssp             ------------------------------------------------ECSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             ------------------------------------------------cCCCceEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence                                                            0233455666667776666665 567777777


Q ss_pred             CCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeE
Q 001310          831 MTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI  910 (1103)
Q Consensus       831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I  910 (1103)
                      .+++. ..+..|...|++++|+| ++++|++++.||.|++||+.+++.+... .|...|.+++|+|++++|++++.||.|
T Consensus       254 ~~~~~-~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i  330 (337)
T 1gxr_A          254 NKPDK-YQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKA  330 (337)
T ss_dssp             TSSCE-EEECCCSSCEEEEEECT-TSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECTTSCEEEEEETTSCE
T ss_pred             CCCCe-EEEcCCccceeEEEECC-CCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECCCCCEEEEecCCCeE
Confidence            66654 35667889999999999 8999999999999999999999877554 488999999999999999999999999


Q ss_pred             EEEEcC
Q 001310          911 FVWDVD  916 (1103)
Q Consensus       911 ~iwd~~  916 (1103)
                      ++|++.
T Consensus       331 ~iw~~~  336 (337)
T 1gxr_A          331 TVYEVI  336 (337)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999973

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=6.9e-35  Score=357.96  Aligned_cols=299  Identities=18%  Similarity=0.252  Sum_probs=253.1

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      ....|++|++.|++++|+|++..+|++|+.|++|+|||+.++.....              .....+.+|...|.+++|+
T Consensus       374 ~~~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s  439 (694)
T 3dm0_A          374 LKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLS  439 (694)
T ss_dssp             EEEEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEEC
T ss_pred             hhhhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEEC
Confidence            34578999999999999998755899999999999999987543211              0112277899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe---e
Q 001310          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---E  482 (1103)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---~  482 (1103)
                      |+|++|++|+.|++|+|||+.++....   .+.+|...|.+++|+|+++  .|++++.|++|++||..........   .
T Consensus       440 ~~g~~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~  514 (694)
T 3dm0_A          440 SDGQFALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGE  514 (694)
T ss_dssp             TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTT
T ss_pred             CCCCEEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCC
Confidence            999999999999999999999986554   6789999999999999999  7999999999999997655433322   4


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      +|...|.+++|++......+++++.|++|++||+.+.+....+..|...|.+++|+|++++|++++.    ++.|++||+
T Consensus       515 ~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~  590 (694)
T 3dm0_A          515 GHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDL  590 (694)
T ss_dssp             SCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEET
T ss_pred             CCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence            6889999999987665578999999999999999999998899999999999999999999999986    667999999


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC-----------------CCCC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----------------LPEN  625 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v  625 (1103)
                      .+++.+..+..+    ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+..                 ...+
T Consensus       591 ~~~~~~~~~~~~----~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  665 (694)
T 3dm0_A          591 AEGKKLYSLEAN----SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYC  665 (694)
T ss_dssp             TTTEEEECCBCS----SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCE
T ss_pred             CCCceEEEecCC----CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEe
Confidence            999988776543    5799999999987776665 56799999999998877754311                 1125


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          626 PRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      .+++|+|+|++|++|+.||.|++|++.
T Consensus       666 ~~l~~spdg~~l~sgs~Dg~i~iW~i~  692 (694)
T 3dm0_A          666 TSLNWSADGSTLFSGYTDGVIRVWGIG  692 (694)
T ss_dssp             EEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             eeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence            689999999999999999999999975

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=5.2e-34  Score=330.84  Aligned_cols=328  Identities=16%  Similarity=0.222  Sum_probs=281.7

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      ..+.|.+|.+.|.. +++++|+ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.+++|+
T Consensus       110 ~~~~l~~h~~~v~~-~~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~  168 (445)
T 2ovr_B          110 SPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQMR  168 (445)
T ss_dssp             CCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEEEE
T ss_pred             eeEEecccCCCcEE-EEEEcCC-EEEEEECCCcEEEEECCCCcEEEE-------------------EcCCCCCEEEEEec
Confidence            34678999987643 3555687 689999999999999999987765                   77899999999997


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1103)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  485 (1103)
                        +.+|++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  ++  .+++|+.|++|++||+.+++.+..+.+|.
T Consensus       169 --~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~  239 (445)
T 2ovr_B          169 --DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHV  239 (445)
T ss_dssp             --TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCS
T ss_pred             --CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCc
Confidence              6799999999999999999986554   678999999999996  45  69999999999999999999999999999


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      ..|.++++    ++.++++++.||.|++||+.+.+....+..+...+.+++|  ++.++++++.    ++.|++||+.++
T Consensus       240 ~~v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~  309 (445)
T 2ovr_B          240 AAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETG  309 (445)
T ss_dssp             SCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTC
T ss_pred             ccEEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCC
Confidence            99999988    5678999999999999999999988899999999999999  8899999986    556999999999


Q ss_pred             eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC-CCCCCceEEEecCCCEEEEEECCC
Q 001310          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-GLPENPRICFNKNGTLLAVIANEN  644 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~dg  644 (1103)
                      +.+..+.+|.   ..+.++.+  +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+  ++++++++.||
T Consensus       310 ~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg  382 (445)
T 2ovr_B          310 NCIHTLTGHQ---SLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDG  382 (445)
T ss_dssp             CEEEEECCCC---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTS
T ss_pred             CEEEEEcCCc---ccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCC
Confidence            9999998887   78888877  46799999999999999999999999887632 34568888885  68999999999


Q ss_pred             eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccce
Q 001310          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1103)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1103)
                      .|++||+.+++.+..+...                                                             
T Consensus       383 ~v~iwd~~~~~~~~~~~~~-------------------------------------------------------------  401 (445)
T 2ovr_B          383 TVKLWDLKTGEFIRNLVTL-------------------------------------------------------------  401 (445)
T ss_dssp             EEEEEETTTCCEEEEEEEC-------------------------------------------------------------
T ss_pred             eEEEEECCCCceeeeeecc-------------------------------------------------------------
Confidence            9999999988766544210                                                             


Q ss_pred             eeeccCccccccEEEEEEecCCcEEEEeecCce----EEEeecCC
Q 001310          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR  765 (1103)
Q Consensus       725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~----i~vw~~~~  765 (1103)
                          ....+...|.+++|+|++..+++++.||.    +.+||+..
T Consensus       402 ----~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~  442 (445)
T 2ovr_B          402 ----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  442 (445)
T ss_dssp             ----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             ----ccCCCCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence                00125678899999999999999999987    88988764

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=100.00  E-value=3.7e-34  Score=318.85  Aligned_cols=288  Identities=20%  Similarity=0.225  Sum_probs=239.8

Q ss_pred             eccCCCccEEEEEE-----CC-CCCEEEEEeCCCeEEEEEecCCCcc----ccceEeccccccEEEEEEecCCCceEEEE
Q 001310          391 LVRDPGVSVNRVVW-----SP-DGSLLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVIT  460 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~-----sp-dg~~las~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~~~l~s  460 (1103)
                      .+.+|.+.|++++|     ++ |+++||+|+.|++|++||+.+++..    .....+.+|...|.+++|+|++.  ++++
T Consensus        16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s   93 (343)
T 2xzm_R           16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS   93 (343)
T ss_dssp             EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred             eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence            47899999999999     77 9999999999999999999865421    23346789999999999999999  8999


Q ss_pred             EcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCccEEEEEE
Q 001310          461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAY  537 (1103)
Q Consensus       461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~  537 (1103)
                      ++.|++|++||+.+++.+..+.+|...|.+++|+|  ++.+|++++.|++|++||+.. .......   .+...+.+++|
T Consensus        94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~~~v~~~~~  170 (343)
T 2xzm_R           94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILG-ECKFSSAEKENHSDWVSCVRY  170 (343)
T ss_dssp             EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSS-CEEEECCTTTSCSSCEEEEEE
T ss_pred             EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccC-CceeeeecccCCCceeeeeee
Confidence            99999999999999999999999999999999965  678999999999999999974 3333332   56778999999


Q ss_pred             ccCC----------CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310          538 SANG----------RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       538 s~dg----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  607 (1103)
                      +|++          .++++++.    ++.|++|| ..++....+.+|.   ..|.+++|+|++++|++|+.||.|++||+
T Consensus       171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~---~~v~~~~~s~~g~~l~sgs~dg~v~iwd~  242 (343)
T 2xzm_R          171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHE---SNVNHLSISPNGKYIATGGKDKKLLIWDI  242 (343)
T ss_dssp             CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTCEEEEEES
T ss_pred             ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCcc---ccceEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            9987          78888876    66799999 4567777888877   89999999999999999999999999999


Q ss_pred             C-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeE--ecc-----------ccccceeeeEEe
Q 001310          608 N-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVD--AAG-----------VLSDNLRKLSVN  673 (1103)
Q Consensus       608 ~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~-----------~~~~~i~~~~~~  673 (1103)
                      . .......+...   ..|.+++|+|++.+++++. |+.|++|++.+++...  .+.           +|...+.+++|+
T Consensus       243 ~~~~~~~~~~~~~---~~v~~v~~sp~~~~la~~~-d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s  318 (343)
T 2xzm_R          243 LNLTYPQREFDAG---STINQIAFNPKLQWVAVGT-DQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNPQCTSLAWN  318 (343)
T ss_dssp             SCCSSCSEEEECS---SCEEEEEECSSSCEEEEEE-SSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCCCEEEEEEC
T ss_pred             CCCcccceeecCC---CcEEEEEECCCCCEEEEEC-CCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCCceEEEEEC
Confidence            4 44444444322   3489999999998887654 6779999998765432  222           455667777775


Q ss_pred             cCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310          674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                                            |+|+++++++.|+.|++|++.+
T Consensus       319 ----------------------p~g~~l~sg~~Dg~v~~w~~~~  340 (343)
T 2xzm_R          319 ----------------------ALGKKLFAGFTDGVIRTFSFET  340 (343)
T ss_dssp             ----------------------SSSCCEEEEETTSEEEEEEEEE
T ss_pred             ----------------------CCCCeEEEecCCceEEEEEEEc
Confidence                                  7899999999999999999764

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=8.1e-34  Score=331.58  Aligned_cols=305  Identities=17%  Similarity=0.230  Sum_probs=267.0

Q ss_pred             cceeEecccCCcCc-eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          324 KTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V-~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      .....+|.+|.+.| .++.|  +++ ++++|+.||+|++||+.+++.+..                   +.+|.+.|.++
T Consensus       111 ~~~~~~l~~h~~~v~~~~~~--~~~-~l~sgs~dg~i~vwd~~~~~~~~~-------------------~~~h~~~V~~l  168 (464)
T 3v7d_B          111 VPQRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWAL  168 (464)
T ss_dssp             CCEEEEEECCSSSCEEEEEE--ETT-EEEEEETTSCEEEEETTTTEEEEE-------------------ECCCSSCEEEE
T ss_pred             CcceEEEcCCCCCcEEEEEE--CCC-EEEEEcCCCcEEEEECCCCcEEEE-------------------EeCCCcCEEEE
Confidence            34567889998886 66666  455 699999999999999999987765                   67899999999


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec--CCCceEEEEEcCCCceEEEeCCCCce---
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSR---  477 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~---  477 (1103)
                      +|+|++ +|++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  ++.  ++++++.|++|++||+.++..   
T Consensus       169 ~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~~~~~~~~  242 (464)
T 3v7d_B          169 KYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPD  242 (464)
T ss_dssp             EECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECCCCCCC--
T ss_pred             EEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCCCCccccc
Confidence            999988 99999999999999999987554   7889999999999995  556  899999999999999987763   


Q ss_pred             --------------------eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEE
Q 001310          478 --------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAY  537 (1103)
Q Consensus       478 --------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~  537 (1103)
                                          +..+.+|...|.++..    ++.++++++.||.|++||+.+.+....+..+...|.+++|
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~  318 (464)
T 3v7d_B          243 HGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIY  318 (464)
T ss_dssp             ----CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred             ccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEE
Confidence                                4567889999988843    5679999999999999999999999999999999999999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  617 (1103)
                      +|+++++++++.    ++.|++||+.+++.+..+.+|.   ..|.+++|+  ++++++++.||.|++||+.++.......
T Consensus       319 ~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~---~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~  389 (464)
T 3v7d_B          319 DHERKRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYH  389 (464)
T ss_dssp             ETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             cCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCC---CcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeec
Confidence            999999999986    5669999999999999999888   899999997  5799999999999999999988776664


Q ss_pred             CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEe-ccccccceeeeEEe
Q 001310          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDA-AGVLSDNLRKLSVN  673 (1103)
Q Consensus       618 ~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~-~~~~~~~i~~~~~~  673 (1103)
                      ..   ..+..++|+++++++++++ |+.|++||+.+++.+.. ...+...+.+++++
T Consensus       390 ~~---~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~~~~~~~~~~v~~v~~~  442 (464)
T 3v7d_B          390 HT---NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFK  442 (464)
T ss_dssp             CT---TCCCEEEEEECSSEEEEEE-TTEEEEEETTTCCEEESCTTTTCSEEEEEEEE
T ss_pred             CC---CCccEEEEEeCCCEEEEec-CCeEEEEECCCCcEEehhhccCCCcEEEEEec
Confidence            32   3478899999999999999 89999999999998875 67788888888886

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=1.8e-34  Score=327.72  Aligned_cols=298  Identities=15%  Similarity=0.138  Sum_probs=249.0

Q ss_pred             cceeEecccCCcCceEEEecCCC-ceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQ-HTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg-~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      ....+.+.+|.+.|++++|+|+| + +|++|+.|+.|+|||+.+++......                 ..+|...|.++
T Consensus        63 ~~~~~~~~~h~~~v~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~-----------------~~~h~~~v~~~  124 (383)
T 3ei3_B           63 YKLHRTASPFDRRVTSLEWHPTHPT-TVAVGSKGGDIILWDYDVQNKTSFIQ-----------------GMGPGDAITGM  124 (383)
T ss_dssp             CEEEEEECCCSSCEEEEEECSSCTT-EEEEEEBTSCEEEEETTSTTCEEEEC-----------------CCSTTCBEEEE
T ss_pred             cceEEeccCCCCCEEEEEECCCCCC-EEEEEcCCCeEEEEeCCCcccceeee-----------------cCCcCCceeEE
Confidence            45677889999999999999999 6 79999999999999999887665311                 34799999999


Q ss_pred             EECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310          403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1103)
Q Consensus       403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  481 (1103)
                      +|+| ++++|++++.|+.|++||+.+ ..+.......+|...|.+++|+|+++  +|++++.|+.|++||+ +++.+..+
T Consensus       125 ~~~~~~~~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~-~~~~~~~~  200 (383)
T 3ei3_B          125 KFNQFNTNQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGL-DGHEIFKE  200 (383)
T ss_dssp             EEETTEEEEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEET-TSCEEEEE
T ss_pred             EeCCCCCCEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEEC-CCCEEEEe
Confidence            9999 789999999999999999986 33332222334558899999999999  8999999999999998 68889999


Q ss_pred             ecCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCC----CCeeEEecCCCccEEEEEEcc-CCCEEEEEecCCCCce
Q 001310          482 EGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS----LGARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGES  555 (1103)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~----~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~  555 (1103)
                      .+|...|.+++|++  ++. ++++++.|+.|++||+.+    ......+ .+...+.+++|+| ++++|++++.    ++
T Consensus       201 ~~h~~~v~~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~  273 (383)
T 3ei3_B          201 KLHKAKVTHAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RN  273 (383)
T ss_dssp             ECSSSCEEEEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SS
T ss_pred             ccCCCcEEEEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CC
Confidence            99999999999965  556 899999999999999997    4444444 6888999999999 9999999976    66


Q ss_pred             eEEEEeCCCCeeEEEEeccccc--------------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC
Q 001310          556 FLVEWNESEGAIKRTYQGLQLQ--------------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1103)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  621 (1103)
                      .|++||+.+++....+.++...              ...+..++|+|++++  +++.||.|++||+.+++.+..+..+.+
T Consensus       274 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~  351 (383)
T 3ei3_B          274 EIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNA  351 (383)
T ss_dssp             EEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTB
T ss_pred             cEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCC
Confidence            7999999998887777654311              133445666677665  777999999999999999999987655


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          622 LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      ...+..++|+|++++|++++ |+.|++|++.+
T Consensus       352 ~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          352 AGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             CSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             CceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            55677789999999999997 89999999874

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.5e-34  Score=328.52  Aligned_cols=299  Identities=12%  Similarity=0.120  Sum_probs=257.3

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC------eeeeeeeeEeeccccccceeeeeccCCCcc
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ------KLFIRNFKVWDIGACSMLFKTALVRDPGVS  398 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~  398 (1103)
                      .+.+++.+|.+.|++++|+|  + +|++|+.||.|+|||+.+++      .+..                   +.+|...
T Consensus         7 ~~~~~~~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~-------------------~~~h~~~   64 (397)
T 1sq9_A            7 ATANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKSYS-------------------HFVHKSG   64 (397)
T ss_dssp             EEEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGEEE-------------------EECCTTC
T ss_pred             hhhhhhhhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCCcceE-------------------EecCCCc
Confidence            45678899999999999999  4 68999999999999999887      3332                   5689999


Q ss_pred             EEEEEECCC----C---CEEEEEeCCCeEEEEEecCCCccc--cceEeccc-----cccEEEEEEe----cCCCceE-EE
Q 001310          399 VNRVVWSPD----G---SLLGVAYSKHIVQLYAYHGGSDAR--QQLEIDAH-----VGNVNDLAFS----APCKQIS-VI  459 (1103)
Q Consensus       399 V~~~~~spd----g---~~las~~~d~~i~iwd~~~~~~~~--~~~~l~~h-----~~~v~~~~~s----~d~~~~~-l~  459 (1103)
                      |.+++|+|+    +   ++|++++.|+.|++||+.+++...  ....+.+|     ...|.+++|+    |+++  . |+
T Consensus        65 v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~  142 (397)
T 1sq9_A           65 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLS--HRLV  142 (397)
T ss_dssp             EEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----C--EEEE
T ss_pred             EEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCc--eEEE
Confidence            999999999    9   999999999999999999887510  02367778     5899999999    9999  7 99


Q ss_pred             EEcCCCceEEEeCCC------CceeE-----Eee-------cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe
Q 001310          460 TCGDDKTIKVWDAVT------GSRTY-----SFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA  521 (1103)
Q Consensus       460 s~~~d~~i~iwd~~~------~~~~~-----~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  521 (1103)
                      +++.|+.|++||+.+      ++.+.     .+.       .|...|.+++|++  ++ ++++++.||.|++||+.+.+.
T Consensus       143 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~  219 (397)
T 1sq9_A          143 ATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRP  219 (397)
T ss_dssp             EEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEE
T ss_pred             EEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCce
Confidence            999999999999998      77776     774       4899999999965  66 999999999999999999888


Q ss_pred             eEEecC---C---CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec-------------ccccCCceE
Q 001310          522 RVDYDA---P---GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------LQLQHNSVS  582 (1103)
Q Consensus       522 ~~~~~~---~---~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------~~~~~~~v~  582 (1103)
                      ...+..   +   ...+.+++|+|++++|++++.++ ..+.|++||+.+++.+..+.+             |.   ..|.
T Consensus       220 ~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~-~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~  295 (397)
T 1sq9_A          220 LYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHS---SWVM  295 (397)
T ss_dssp             EEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBS---SCEE
T ss_pred             eEEEeccccccccCCccceEEECCCCCEEEEEecCC-CCceEEEEECCCCcccceeccCcccccccccccccC---CcEE
Confidence            888888   7   88999999999999999988620 017899999999999999987             66   8999


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc------CC-------------CCCCCCceEEEecCC---------
Q 001310          583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID------AG-------------GGLPENPRICFNKNG---------  634 (1103)
Q Consensus       583 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~g---------  634 (1103)
                      +++|+|++++|++++.||.|++||+.+++.+..+.      .+             .+...|.+++|+|++         
T Consensus       296 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~  375 (397)
T 1sq9_A          296 SLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADL  375 (397)
T ss_dssp             EEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTT
T ss_pred             EEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccc
Confidence            99999999999999999999999999999999988      43             014569999999998         


Q ss_pred             -CEEEEEECCCeEEEEEcCCC
Q 001310          635 -TLLAVIANENRIKILETPES  654 (1103)
Q Consensus       635 -~~l~~~~~dg~i~iw~~~~~  654 (1103)
                       ++|++++.||.|++|++.++
T Consensus       376 ~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          376 NESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             SCEEEEEETTTEEEEEEEEC-
T ss_pred             cceEEEecCCCcEEEEEcCCC
Confidence             79999999999999998765

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=8.4e-36  Score=346.32  Aligned_cols=344  Identities=10%  Similarity=0.062  Sum_probs=251.6

Q ss_pred             cceeEecccCCcCceEEEecCCC---------ceEEEE-------------------EcCCCcEEEEECCCCCeeeeeee
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQ---------HTLLLV-------------------GTNVGDTGLWDVNSGQKLFIRNF  375 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg---------~~llas-------------------gs~d~~v~iwd~~~~~~~~~~~~  375 (1103)
                      ..+..++. +.+.|++|+|+|++         + +||+                   |+.|++|+|||+.+++.....  
T Consensus       124 ~r~~~~~~-~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~~--  199 (524)
T 2j04_B          124 KRRGFIYN-VGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCVK--  199 (524)
T ss_dssp             CSCEEEEE-CCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEEE--
T ss_pred             CcceEEEE-CCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCceE--
Confidence            34444444 56789999999886         4 4555                   457789999999887643210  


Q ss_pred             eEeeccccccceeeeeccCCCccEEEEEECCC------CCEEEEEeCCCeEEEEEecCCCcc--------ccceEecccc
Q 001310          376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPD------GSLLGVAYSKHIVQLYAYHGGSDA--------RQQLEIDAHV  441 (1103)
Q Consensus       376 ~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd------g~~las~~~d~~i~iwd~~~~~~~--------~~~~~l~~h~  441 (1103)
                                   ...+.+|.+.|.+++|+|+      +.+||+++.||+|+|||+.++...        .....+.+|.
T Consensus       200 -------------~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~  266 (524)
T 2j04_B          200 -------------VQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD  266 (524)
T ss_dssp             -------------EEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred             -------------EEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence                         0114568899999999997      579999999999999999876432        1234678999


Q ss_pred             ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc-eeEEeecCCCceEEEEeeecCCc-cEEEEEECCCeEEEEEcCCC
Q 001310          442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSL  519 (1103)
Q Consensus       442 ~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~  519 (1103)
                      ..|++++|++++   .|++|+.||+|++||+.++. +...+.+|...|.++++...+++ .+|++++.|++|++||+++.
T Consensus       267 ~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~  343 (524)
T 2j04_B          267 SLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI  343 (524)
T ss_dssp             TCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred             CCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence            999999999864   59999999999999999774 45678999999999954335566 79999999999999999887


Q ss_pred             CeeEEecCCC--ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe
Q 001310          520 GARVDYDAPG--LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG  597 (1103)
Q Consensus       520 ~~~~~~~~~~--~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~  597 (1103)
                      +....+..+.  ..+.+++|+|+++.+++++.    ++.|++||++++..+..+.+|.   ..|.+++|+|+++.|++|+
T Consensus       344 ~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~---~~V~sva~Sp~g~~l~Sgs  416 (524)
T 2j04_B          344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRE---TTITAIGVSRLHPMVLAGS  416 (524)
T ss_dssp             HHHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECS---SCEEEEECCSSCCBCEEEE
T ss_pred             CcccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCC---CceEEEEeCCCCCeEEEEE
Confidence            7655554443  25788999999999988865    5679999999999888888887   8999999999999999999


Q ss_pred             CCCcEEEEECCCCeeEEEEcCC---CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC-CCCeeEeccccccceeeeEEe
Q 001310          598 DDHVIKIWDMNKVQLLTTIDAG---GGLPENPRICFNKNGTLLAVIANENRIKILETP-ESNSVDAAGVLSDNLRKLSVN  673 (1103)
Q Consensus       598 ~dg~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~-~~~~~~~~~~~~~~i~~~~~~  673 (1103)
                      .||+|++||+..+ .+......   .....+..++|+|+++.+. ...  .+.+|... ++..+..+.+|...|.+++|+
T Consensus       417 ~Dgtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafs  492 (524)
T 2j04_B          417 ADGSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWN  492 (524)
T ss_dssp             TTTEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC-------------CCCSCCCEEEC
T ss_pred             CCCEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCCcceeeecCCCceEEEEECC
Confidence            9999999998654 22111100   0111356889999998553 222  23344332 456777888999999999998


Q ss_pred             cCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310          674 PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       674 ~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                      |.+                   +.+..+++|+.+|.|+||++..
T Consensus       493 p~~-------------------~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          493 ETS-------------------AGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CST-------------------TTTTEEEEECTTSEEEEEECSC
T ss_pred             CCC-------------------CccHHHHhhccCceEEEEEccc
Confidence            542                   2356899999999999999873

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.8e-33  Score=317.89  Aligned_cols=292  Identities=12%  Similarity=0.099  Sum_probs=259.3

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      ....|.+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+..                   +.+|...|.+++|+
T Consensus        24 ~~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~~-------------------~~~h~~~v~~~~~~   83 (369)
T 3zwl_B           24 KAIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLGT-------------------LDGHTGTIWSIDVD   83 (369)
T ss_dssp             EEEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEEE-------------------ECCCSSCEEEEEEC
T ss_pred             ccEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhhh-------------------hhhcCCcEEEEEEc
Confidence            3466899999999999999998 689999999999999999987765                   67899999999999


Q ss_pred             CCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-----CceEEEeCCCCc----
Q 001310          406 PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGS----  476 (1103)
Q Consensus       406 pdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~----  476 (1103)
                      |++++|++++.||.|++||+.+++.+.   .+. |...|.+++|+|+++  ++++++.+     +.|++||+.++.    
T Consensus        84 ~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~  157 (369)
T 3zwl_B           84 CFTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHE  157 (369)
T ss_dssp             TTSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCC
T ss_pred             CCCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCcccee
Confidence            999999999999999999999987655   344 888999999999999  78999888     999999988664    


Q ss_pred             -------eeEEeecCCC--ceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCeeEEecCCCccEEEEEEccCCCEEEE
Q 001310          477 -------RTYSFEGHGA--PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFS  546 (1103)
Q Consensus       477 -------~~~~~~~~~~--~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~  546 (1103)
                             .+..+..|..  .+.+++|++  ++.++++++.||.|++||+.+ ......+..+...|.+++|+|++++|++
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~  235 (369)
T 3zwl_B          158 LTKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFIT  235 (369)
T ss_dssp             EEEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ecccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEE
Confidence                   3455566666  899999965  667999999999999999998 6677788889999999999999999999


Q ss_pred             EecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC--------------cEEEEECCCCee
Q 001310          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--------------VIKIWDMNKVQL  612 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~  612 (1103)
                      ++.    ++.|++||+.+++.+..+.. .   ..+..++|+|+++++++++.++              .+++||..+++.
T Consensus       236 ~~~----d~~i~v~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~  307 (369)
T 3zwl_B          236 SSR----DTNSFLVDVSTLQVLKKYET-D---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEE  307 (369)
T ss_dssp             EET----TSEEEEEETTTCCEEEEEEC-S---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCE
T ss_pred             ecC----CceEEEEECCCCceeeeecC-C---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcc
Confidence            976    66799999999999888873 3   6899999999999999999888              899999999999


Q ss_pred             EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310          613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1103)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~  655 (1103)
                      +..+..+.  ..|.+++|+|++++|++++.||.|++|++..+.
T Consensus       308 ~~~~~~~~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~  348 (369)
T 3zwl_B          308 IGRVQGHF--GPLNTVAISPQGTSYASGGEDGFIRLHHFEKSY  348 (369)
T ss_dssp             EEEEECCS--SCEEEEEECTTSSEEEEEETTSEEEEEEECHHH
T ss_pred             hhheeccc--CcEEEEEECCCCCEEEEEcCCCeEEEEECcccc
Confidence            99988764  469999999999999999999999999998653

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.2e-33  Score=311.18  Aligned_cols=293  Identities=20%  Similarity=0.269  Sum_probs=256.7

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ....++|.+|.+.|++++| |+++ +|++|+.||.|++||+.+++....                   +..|...|.+++
T Consensus         8 ~~~~~~l~~h~~~v~~~~~-~~~~-~l~s~~~dg~v~vw~~~~~~~~~~-------------------~~~~~~~v~~~~   66 (313)
T 3odt_A            8 YQLSATLKGHDQDVRDVVA-VDDS-KVASVSRDGTVRLWSKDDQWLGTV-------------------VYTGQGFLNSVC   66 (313)
T ss_dssp             CEEEEEECCCSSCEEEEEE-EETT-EEEEEETTSEEEEEEESSSEEEEE-------------------EEECSSCEEEEE
T ss_pred             HHHHHHhhCCCCCcEEEEe-cCCC-EEEEEEcCCcEEEEECCCCEEEEE-------------------eecCCccEEEEE
Confidence            4677899999999999999 9998 689999999999999988876654                   556899999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      |+|++++|++++.|+.|++|++...........+.+|...|.+++|  ++.  .+++++.|+.|++||  .++.+..+..
T Consensus        67 ~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d--~~~~~~~~~~  140 (313)
T 3odt_A           67 YDSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK--EGSLVYNLQA  140 (313)
T ss_dssp             EETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE--TTEEEEEEEC
T ss_pred             ECCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc--CCcEEEeccc
Confidence            9999999999999999999999876555555578899999999999  456  799999999999999  7888899999


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC-CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      |...+.++++.+. ++.++++++.||.|++||  .......+.. +...+.+++|+|++. +++++.    ++.|++||+
T Consensus       141 ~~~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~  212 (313)
T 3odt_A          141 HNASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDM  212 (313)
T ss_dssp             CSSCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEET
T ss_pred             CCCceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEEC
Confidence            9999999999763 557999999999999999  4445556665 788999999999999 777765    667999999


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      .+++.+..+.+|.   ..|.+++|+|++ .+++++.||.|++||+.+++.+..+..+.  ..+.+++|+|+++ +++++.
T Consensus       213 ~~~~~~~~~~~~~---~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~--~~i~~~~~~~~~~-~~~~~~  285 (313)
T 3odt_A          213 HTGDVLRTYEGHE---SFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPA--ISIWSVDCMSNGD-IIVGSS  285 (313)
T ss_dssp             TTCCEEEEEECCS---SCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSS--SCEEEEEECTTSC-EEEEET
T ss_pred             CchhhhhhhhcCC---ceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccC--ceEEEEEEccCCC-EEEEeC
Confidence            9999999999887   899999999998 69999999999999999999999988764  4689999999998 667999


Q ss_pred             CCeEEEEEcCCCCeeE
Q 001310          643 ENRIKILETPESNSVD  658 (1103)
Q Consensus       643 dg~i~iw~~~~~~~~~  658 (1103)
                      ||.|++|++.+++...
T Consensus       286 dg~i~iw~~~~~~~~~  301 (313)
T 3odt_A          286 DNLVRIFSQEKSRWAS  301 (313)
T ss_dssp             TSCEEEEESCGGGCCC
T ss_pred             CCcEEEEeCCCCceee
Confidence            9999999999875544

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=4.2e-35  Score=340.46  Aligned_cols=350  Identities=10%  Similarity=0.044  Sum_probs=244.2

Q ss_pred             CCccEEEEEECCCC---------CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC
Q 001310          395 PGVSVNRVVWSPDG---------SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK  465 (1103)
Q Consensus       395 h~~~V~~~~~spdg---------~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~  465 (1103)
                      +.+.|.+++|+|++         ++||+|+.++..                          -..+|+++  .+++++.|+
T Consensus       132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~  183 (524)
T 2j04_B          132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS  183 (524)
T ss_dssp             CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred             CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence            56899999999987         799999866420                          01368888  799999999


Q ss_pred             ceEEEeCCCCcee----EEeecCCCceEEEEeeec----CCccEEEEEECCCeEEEEEcCCCCe-----------eEEec
Q 001310          466 TIKVWDAVTGSRT----YSFEGHGAPVYSLCPHAK----ENIHFIFSISVDGKIKAWLYDSLGA-----------RVDYD  526 (1103)
Q Consensus       466 ~i~iwd~~~~~~~----~~~~~~~~~v~~~~~~~~----~~~~~l~s~~~dg~i~iwd~~~~~~-----------~~~~~  526 (1103)
                      +|+|||+.+++..    ..+.+|.+.|.+++|+|.    +++.+|++++.||+|++||+.....           ...+.
T Consensus       184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~  263 (524)
T 2j04_B          184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS  263 (524)
T ss_dssp             EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred             eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence            9999999887753    456778899999999886    3467999999999999999986542           23567


Q ss_pred             CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe-eEEEEecccccCCceEEE--EEcCCC-CEEEEEeCCCcE
Q 001310          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRTYQGLQLQHNSVSVV--HFDTAK-DQILAAGDDHVI  602 (1103)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i  602 (1103)
                      .+...|.+++|++++ .|++++.    ++.|++||+.++. ....+.+|.   ..|.++  +|+|++ ..|++++.|++|
T Consensus       264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~---~~V~sv~~~~s~~g~~~laS~S~D~tv  335 (524)
T 2j04_B          264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHD---SYILSVSTAYSDFEDTVVSTVAVDGYF  335 (524)
T ss_dssp             CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSS---SCEEEEEEECCTTSCCEEEEEETTSEE
T ss_pred             cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeeccc---ccEEEEEEEcCCCCCeEEEEeccCCeE
Confidence            788899999999865 7888875    6779999999764 445677777   899999  578887 889999999999


Q ss_pred             EEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeee
Q 001310          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1103)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  682 (1103)
                      ++||+++++.+..+..+.....+.+++|+|+++.+++++.|++|++||+.++..+..+.+                    
T Consensus       336 klWD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~g--------------------  395 (524)
T 2j04_B          336 YIFNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVS--------------------  395 (524)
T ss_dssp             EEECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEE--------------------
T ss_pred             EEEECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeec--------------------
Confidence            999999888766665443223478999999999999999999999999987654443332                    


Q ss_pred             ccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEee
Q 001310          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  762 (1103)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~  762 (1103)
                                                                        |...|.+++|+|+|+.|++++.||+|++|+
T Consensus       396 --------------------------------------------------H~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd  425 (524)
T 2j04_B          396 --------------------------------------------------RETTITAIGVSRLHPMVLAGSADGSLIITN  425 (524)
T ss_dssp             --------------------------------------------------CSSCEEEEECCSSCCBCEEEETTTEEECCB
T ss_pred             --------------------------------------------------CCCceEEEEeCCCCCeEEEEECCCEEEEEe
Confidence                                                              556677777888888888888888888887


Q ss_pred             cCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcC-CceeeEEecC
Q 001310          763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP  841 (1103)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~-~~~~~~~~~~  841 (1103)
                      ......               ....+.       ....+...+.+++|+|+++.+...  +.+.+|+.. ++..+.++.+
T Consensus       426 ~~~~~~---------------~~~~~~-------~~~~~~~~v~~v~~sp~g~~~~~~--~~~~~~~~~~~g~~~~~l~g  481 (524)
T 2j04_B          426 AARRLL---------------HGIKNS-------SATQKSLRLWKWDYSIKDDKYRID--SSYEVYPLTVNDVSKAKIDA  481 (524)
T ss_dssp             SCSSTT---------------TCC-------------CCCCEEEECBCCSSSCEEEEC--CCCCCCC-------------
T ss_pred             chHhhc---------------cccccC-------ccceeeeEEEEeccCCCCCeEEcc--CCceecccccCCcceeeecC
Confidence            533210               000000       000022346788999999865332  233344433 5677888999


Q ss_pred             CCCCeeEEEEcCCC---CCEEEEEeCCCeEEEEEcCC
Q 001310          842 PSPTATSLAFNPHD---NNVIAIGMDDSTILIYNARS  875 (1103)
Q Consensus       842 ~~~~i~~l~~s~~d---~~~lasg~~dg~v~iwd~~~  875 (1103)
                      |...|.+++|+| +   +.++|+|+.||.|+||++.-
T Consensus       482 h~~~V~~Vafsp-~~~~~~~lAsg~~~g~vrlw~l~~  517 (524)
T 2j04_B          482 HGINITCTKWNE-TSAGGKCYAFSNSAGLLTLEYLSL  517 (524)
T ss_dssp             CCCSCCCEEECC-STTTTTEEEEECTTSEEEEEECSC
T ss_pred             CCceEEEEECCC-CCCccHHHHhhccCceEEEEEccc
Confidence            999999999999 6   45999999999999999874

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=100.00  E-value=3.9e-33  Score=323.49  Aligned_cols=319  Identities=18%  Similarity=0.280  Sum_probs=269.0

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.+.|.. +++++|++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|+  +.  ++++|+.||+|++||
T Consensus       114 l~~h~~~v~~-~~~~~g~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~~~dg~i~vwd  185 (445)
T 2ovr_B          114 LKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLR---TLVGHTGGVWSSQMR--DN--IIISGSTDRTLKVWN  185 (445)
T ss_dssp             EECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEE---ECCCCSSCEEEEEEE--TT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCcEE-EEEEcCCEEEEEECCCcEEEEECCCCcEEE---EEcCCCCCEEEEEec--CC--EEEEEeCCCeEEEEE
Confidence            6689887543 355579999999999999999999987655   678999999999998  44  799999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      +.+++.+..+.+|...|.+++++    +..+++++.||.|++||+.+++....+..+...+.++++  +++++++++.  
T Consensus       186 ~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~--  257 (445)
T 2ovr_B          186 AETGECIHTLYGHTSTVRCMHLH----EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAY--  257 (445)
T ss_dssp             TTTTEEEEEECCCSSCEEEEEEE----TTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEE--CSSCEEEEET--
T ss_pred             CCcCcEEEEECCCCCcEEEEEec----CCEEEEEeCCCEEEEEECCCCcEEEEEcCCcccEEEEEE--CCCEEEEEcC--
Confidence            99999999999999999999984    358999999999999999999999899999999999998  7889999876  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                        ++.|++||+.+++.+..+.+|.   ..|.++.|  ++.++++++.||.|++||+.+++.+..+..+..  .+.++.+ 
T Consensus       258 --dg~i~iwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~--~v~~~~~-  327 (445)
T 2ovr_B          258 --DFMVKVWDPETETCLHTLQGHT---NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS--LTSGMEL-  327 (445)
T ss_dssp             --TSCEEEEEGGGTEEEEEECCCS---SCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCS--CEEEEEE-
T ss_pred             --CCEEEEEECCCCcEeEEecCCC---CceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcc--cEEEEEE-
Confidence              5669999999999999998877   88999999  788999999999999999999999998876633  4555555 


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310          632 KNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1103)
Q Consensus       632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1103)
                       +++++++++.||.|++||+.+++.+..+..+                                                
T Consensus       328 -~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------  358 (445)
T 2ovr_B          328 -KDNILVSGNADSTVKIWDIKTGQCLQTLQGP------------------------------------------------  358 (445)
T ss_dssp             -ETTEEEEEETTSCEEEEETTTCCEEEEECST------------------------------------------------
T ss_pred             -eCCEEEEEeCCCeEEEEECCCCcEEEEEccC------------------------------------------------
Confidence             5779999999999999998766443322110                                                


Q ss_pred             cccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCce
Q 001310          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1103)
Q Consensus       712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1103)
                                                                                                      
T Consensus       359 --------------------------------------------------------------------------------  358 (445)
T 2ovr_B          359 --------------------------------------------------------------------------------  358 (445)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEe-----cCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001310          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDD  865 (1103)
Q Consensus       792 ~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1103)
                             ..|...|.+++++  ++++++++ ||.|++||+.+++.+..+     ..+...|++++|+| ++.++|+|+.|
T Consensus       359 -------~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~la~~~~d  428 (445)
T 2ovr_B          359 -------NKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASN-TKLVCAVGSRN  428 (445)
T ss_dssp             -------TSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECS-SEEEEEEECSS
T ss_pred             -------CCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecC-CEEEEEEcccC
Confidence                   0155566677764  46777776 688888888888888777     45778999999999 89999999999


Q ss_pred             Ce----EEEEEcCC
Q 001310          866 ST----ILIYNARS  875 (1103)
Q Consensus       866 g~----v~iwd~~~  875 (1103)
                      |+    |.+||+..
T Consensus       429 g~~~~~l~v~df~~  442 (445)
T 2ovr_B          429 GTEETKLLVLDFDV  442 (445)
T ss_dssp             SSSCCEEEEEECCC
T ss_pred             CCCccEEEEEECCC
Confidence            97    99999875

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=100.00  E-value=5e-33  Score=324.88  Aligned_cols=346  Identities=15%  Similarity=0.193  Sum_probs=276.7

Q ss_pred             eEEEEecccccCCc-eEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310          567 IKRTYQGLQLQHNS-VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~  645 (1103)
                      ....+.+|.   .. +.++.+  +++++++|+.||+|++||+.+++.+..+..|  ...|.+++|+|++ ++++++.||+
T Consensus       113 ~~~~l~~h~---~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h--~~~V~~l~~~~~~-~l~s~s~dg~  184 (464)
T 3v7d_B          113 QRTTLRGHM---TSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGH--DGGVWALKYAHGG-ILVSGSTDRT  184 (464)
T ss_dssp             EEEEEECCS---SSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCC--SSCEEEEEECSTT-EEEEEETTSC
T ss_pred             ceEEEcCCC---CCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCC--CcCEEEEEEcCCC-EEEEEeCCCC
Confidence            455777777   44 566666  5679999999999999999999999999866  4579999999988 9999999999


Q ss_pred             EEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1103)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1103)
                      |++||+.+++.+..+.+|...+.++++.+                    .+++.++++++.|+.+++|++..........
T Consensus       185 i~vwd~~~~~~~~~~~~h~~~v~~l~~~~--------------------~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~  244 (464)
T 3v7d_B          185 VRVWDIKKGCCTHVFEGHNSTVRCLDIVE--------------------YKNIKYIVTGSRDNTLHVWKLPKESSVPDHG  244 (464)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEE--------------------SSSCEEEEEEETTSCEEEEECCCCCCC----
T ss_pred             EEEEECCCCcEEEEECCCCCccEEEEEec--------------------CCCCCEEEEEcCCCcEEEeeCCCCccccccc
Confidence            99999999999999999999999999985                    3678899999999999999987433221111


Q ss_pred             eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1103)
Q Consensus       726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  805 (1103)
                      .       ......+.+.+++..                                          .....+  .+|...+
T Consensus       245 ~-------~~~~~~~~~~~~~~~------------------------------------------~~~~~~--~~~~~~v  273 (464)
T 3v7d_B          245 E-------EHDYPLVFHTPEENP------------------------------------------YFVGVL--RGHMASV  273 (464)
T ss_dssp             ---------CCSSEEESCGGGCT------------------------------------------TEEEEE--CCCSSCE
T ss_pred             c-------cCCcceEeeccCCCe------------------------------------------EEEEEc--cCccceE
Confidence            0       000000111111100                                          000001  1367777


Q ss_pred             eEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc
Q 001310          806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG  884 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~  884 (1103)
                      .++  +++++++++++ |+.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+.+++.+..+.+
T Consensus       274 ~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~  350 (464)
T 3v7d_B          274 RTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQG  350 (464)
T ss_dssp             EEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeC
Confidence            766  68899999997 79999999999999999999999999999999 899999999999999999999999999999


Q ss_pred             CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEEC
Q 001310          885 HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA  964 (1103)
Q Consensus       885 h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~  964 (1103)
                      |...|.+++|+  +++|++++.||.|++||+.+++....  .  ...     ..+..++|+|++++++++.|+.|++||+
T Consensus       351 h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~--~--~~~-----~~~~~~~~~~~~~~l~~~~dg~i~iwd~  419 (464)
T 3v7d_B          351 HTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFS--Y--HHT-----NLSAITTFYVSDNILVSGSENQFNIYNL  419 (464)
T ss_dssp             CSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEE--E--ECT-----TCCCEEEEEECSSEEEEEETTEEEEEET
T ss_pred             CCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeee--e--cCC-----CCccEEEEEeCCCEEEEecCCeEEEEEC
Confidence            99999999997  58999999999999999998653221  1  111     2577899999999999988999999999


Q ss_pred             CCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEe
Q 001310          965 EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus       965 ~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd 1006 (1103)
                      .+++.+.....+|...|.+++|+ ++.++++++.||.+.+|-
T Consensus       420 ~~g~~~~~~~~~~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~  460 (464)
T 3v7d_B          420 RSGKLVHANILKDADQIWSVNFK-GKTLVAAVEKDGQSFLEI  460 (464)
T ss_dssp             TTCCEEESCTTTTCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred             CCCcEEehhhccCCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence            99999987777899999999997 445556666777666554

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=4.9e-34  Score=320.89  Aligned_cols=301  Identities=12%  Similarity=0.201  Sum_probs=249.5

Q ss_pred             ccceeEecccCCcCceEEEecCCCceEEEEEcC---CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          323 PKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTN---VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       323 p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~---d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      |....+.+.+|.+.|.+++|+|++..++++|+.   |+.|+|||+.+++.....                  ..+|...|
T Consensus         7 ~~~~~~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~~------------------~~~~~~~v   68 (357)
T 3i2n_A            7 PQIIAHIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLLR------------------EIEKAKPI   68 (357)
T ss_dssp             CCEEEEEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEEE------------------EEEESSCE
T ss_pred             hHHhhhhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCccccee------------------eecccCcE
Confidence            445566778999999999999999878889987   999999999998765431                  22589999


Q ss_pred             EEEEECCC---CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEE------EecCCCceEEEEEcCCCceEEE
Q 001310          400 NRVVWSPD---GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA------FSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       400 ~~~~~spd---g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~------~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      .+++|+|+   +++|++|+.||.|++||+.+++  .....+.+|...|.+++      |+|+++  .|++++.|+.|++|
T Consensus        69 ~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vw  144 (357)
T 3i2n_A           69 KCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--MPVYSVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVW  144 (357)
T ss_dssp             EEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--SCSEEECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEE
T ss_pred             EEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--ccEEEEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEE
Confidence            99999998   7999999999999999999886  12336889999999995      467888  89999999999999


Q ss_pred             eCCCCc-eeEEeecCCC----ceEEEEee--ecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc---C
Q 001310          471 DAVTGS-RTYSFEGHGA----PVYSLCPH--AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA---N  540 (1103)
Q Consensus       471 d~~~~~-~~~~~~~~~~----~v~~~~~~--~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~---d  540 (1103)
                      |+.+++ .+..+..|.+    .+.++++.  .++++.++++++.||.|++||+++.+... ...+...+.+++|+|   +
T Consensus       145 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          145 DPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRW-ETNIKNGVCSLEFDRKDIS  223 (357)
T ss_dssp             CTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEE-EEECSSCEEEEEESCSSSS
T ss_pred             eCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceee-ecCCCCceEEEEcCCCCCC
Confidence            999987 7788876655    78888843  24577899999999999999999877644 355677999999999   9


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeeEEEEe-----cccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC----
Q 001310          541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ-----GLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV----  610 (1103)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~----  610 (1103)
                      +.++++++.    ++.|++||+.+++....+.     +|.   ..|.+++|+|+++ ++++++.||.|++||+..+    
T Consensus       224 ~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~  296 (357)
T 3i2n_A          224 MNKLVATSL----EGKFHVFDMRTQHPTKGFASVSEKAHK---STVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRS  296 (357)
T ss_dssp             CCEEEEEES----TTEEEEEEEEEEETTTEEEEEEEECCS---SCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC-
T ss_pred             CCEEEEECC----CCeEEEEeCcCCCcccceeeeccCCCc---CCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccc
Confidence            999999876    6679999998877655554     555   8999999999998 7999999999999998754    


Q ss_pred             ---------------eeEEEEcCCCCCCCCceEEEecCCCEEE-EEECCCeEEEEEcCCCC
Q 001310          611 ---------------QLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESN  655 (1103)
Q Consensus       611 ---------------~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~dg~i~iw~~~~~~  655 (1103)
                                     +.+..+..|  ...|.+++|+|++++|+ +++.|+.|++|++.+..
T Consensus       297 ~~~~~g~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          297 KKDSEGIEMGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             -CCTTSCCCCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             cccCCCCccccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence                           345556655  45699999999999998 79999999999998654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=100.00  E-value=6.8e-33  Score=309.21  Aligned_cols=299  Identities=21%  Similarity=0.303  Sum_probs=250.2

Q ss_pred             ccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCCCcc--ccceEeccccccEEEEEEecCCCceEEEEEcCCCceE
Q 001310          392 VRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIK  468 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~  468 (1103)
                      |.||.+.|++|+|+|+ +++||+|+.|++|+|||+.+++..  .....+.+|...|.+++|+|+++  +|++++.|+.|+
T Consensus        34 L~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~--~l~s~~~d~~i~  111 (340)
T 4aow_A           34 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQ--FALSGSWDGTLR  111 (340)
T ss_dssp             ECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSS--EEEEEETTSEEE
T ss_pred             ECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCC--EEEEEcccccce
Confidence            8899999999999997 689999999999999999876542  23446789999999999999999  899999999999


Q ss_pred             EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCC--CEEE
Q 001310          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANG--RRLF  545 (1103)
Q Consensus       469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg--~~l~  545 (1103)
                      +|+...+........+...+..+.+.+  ++.++++++.|+.+++||........ ....+...+..++|++++  .+++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~  189 (340)
T 4aow_A          112 LWDLTTGTTTRRFVGHTKDVLSVAFSS--DNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIV  189 (340)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEeecccceeeeecCCCCceeEEEEee--cCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEE
Confidence            999999999988888888888888754  66799999999999999987655443 445677889999999875  4566


Q ss_pred             EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1103)
                      +++.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+.+++.+..+..+   ..+
T Consensus       190 s~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v  259 (340)
T 4aow_A          190 SCGW----DKLVKVWNLANCKLKTNHIGHT---GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDGG---DII  259 (340)
T ss_dssp             EEET----TSCEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECS---SCE
T ss_pred             EEcC----CCEEEEEECCCCceeeEecCCC---CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecCC---ceE
Confidence            6654    5679999999999999999888   89999999999999999999999999999999999888765   358


Q ss_pred             ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec
Q 001310          626 PRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE  705 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~  705 (1103)
                      .+++|+|++.++ +++.|+.|++||+.++..+..+.....                                        
T Consensus       260 ~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~----------------------------------------  298 (340)
T 4aow_A          260 NALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVI----------------------------------------  298 (340)
T ss_dssp             EEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC------------------------------------------
T ss_pred             EeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccce----------------------------------------
Confidence            999999987655 555689999999988766554432110                                        


Q ss_pred             cccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCC
Q 001310          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1103)
Q Consensus       706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~  766 (1103)
                                           .....+|...|.+++|+|+|++|++++.||.|++|++..+
T Consensus       299 ---------------------~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tG  338 (340)
T 4aow_A          299 ---------------------STSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIG  338 (340)
T ss_dssp             --------------------------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC-
T ss_pred             ---------------------eeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCc
Confidence                                 0011237788999999999999999999999999997654

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.3e-33  Score=327.05  Aligned_cols=274  Identities=12%  Similarity=0.181  Sum_probs=212.1

Q ss_pred             CccceeEec-ccCCcCceEEEecC-CCceEEEEEcCCCcEEEEECCC---CCeeeeeeeeEeeccccccceeeeeccCCC
Q 001310          322 FPKTVAQTL-IEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNS---GQKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1103)
Q Consensus       322 ~p~~~~~~l-~~h~~~V~~v~~sp-dg~~llasgs~d~~v~iwd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  396 (1103)
                      .....+..+ .+|.+.|++++|+| +++ +||+|+.||+|+|||+.+   +.....                 ....+|.
T Consensus        50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~~-----------------~~~~~h~  111 (437)
T 3gre_A           50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYSS-----------------SLTYDCS  111 (437)
T ss_dssp             CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCSC-----------------SEEEECS
T ss_pred             ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccce-----------------eeeccCC
Confidence            345677788 89999999999999 998 799999999999999877   432210                 0011499


Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEec---CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYH---GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~---~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  473 (1103)
                      ..|.+++|+|++++|++|+.||+|++||+.   +++...   .+.+|  .+..+.|+|++                    
T Consensus       112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~---~~~~~--~i~~~~~~~~~--------------------  166 (437)
T 3gre_A          112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVK---FLNCE--CIRKINLKNFG--------------------  166 (437)
T ss_dssp             SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEE---EEEEE--EEEEEEGGGGS--------------------
T ss_pred             CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceee---ccccc--eeEEEEccCcc--------------------
Confidence            999999999999999999999999999995   544332   34444  67777777643                    


Q ss_pred             CCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC--CCccEEEEEEccCCCEEEEEecCC
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA--PGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                                +...+.++.+...+++.++++++.||.|++||+.+.+....+..  +...|.+++|+|++++|++++.  
T Consensus       167 ----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~--  234 (437)
T 3gre_A          167 ----------KNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTT--  234 (437)
T ss_dssp             ----------SCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEET--
T ss_pred             ----------cccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcC--
Confidence                      33344555555567888999999999999999999998888887  7789999999999999999986  


Q ss_pred             CCceeEEEEeCCCCeeEEEEe-cccccCCceEEEEEc----CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC-----
Q 001310          552 EGESFLVEWNESEGAIKRTYQ-GLQLQHNSVSVVHFD----TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-----  621 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~-~~~~~~~~v~~~~~~----~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----  621 (1103)
                        ++.|++||+++++.+..+. .+.   ..|.+++|+    +++.++++++.||.|++||+.+++.+..+..+..     
T Consensus       235 --dg~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~  309 (437)
T 3gre_A          235 --RGIIDIWDIRFNVLIRSWSFGDH---APITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSME  309 (437)
T ss_dssp             --TSCEEEEETTTTEEEEEEBCTTC---EEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGG
T ss_pred             --CCeEEEEEcCCccEEEEEecCCC---CceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccc
Confidence              5669999999999998886 555   689999665    4577999999999999999999999988876532     


Q ss_pred             -------------------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310          622 -------------------LPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1103)
Q Consensus       622 -------------------~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~  656 (1103)
                                         ...|.+++|+ ++++|++++.|+.|++||+.+++.
T Consensus       310 ~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~  362 (437)
T 3gre_A          310 HFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSS  362 (437)
T ss_dssp             GGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGG
T ss_pred             eecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCccc
Confidence                               2224555555 445555555555555555554433

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=6.2e-34  Score=321.29  Aligned_cols=295  Identities=16%  Similarity=0.217  Sum_probs=247.8

Q ss_pred             EecccCCcCceEEEecCC---CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          328 QTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spd---g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ..+.+|.+.|++++|+|+   +..++++++.++.|+|||+.+++.+....              ......|...|.+++|
T Consensus        12 ~~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~--------------~~~~~~~~~~v~~~~~   77 (366)
T 3k26_A           12 SLKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQ--------------SYVDADADENFYTCAW   77 (366)
T ss_dssp             EEECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEE--------------EEECSCTTCCEEEEEE
T ss_pred             EeecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeee--------------eccccCCCCcEEEEEe
Confidence            455699999999999984   44456666667799999999887665321              1113347889999999


Q ss_pred             CCC----CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          405 SPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       405 spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      +|+    |++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+| ++.  +|++++.||.|++||+.+++.+.
T Consensus        78 ~~~~~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~  152 (366)
T 3k26_A           78 TYDSNTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVA  152 (366)
T ss_dssp             EECTTTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEE
Confidence            999    6799999999999999999987554   6779999999999999 787  89999999999999999999999


Q ss_pred             Ee---ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE----------------------------ecCC
Q 001310          480 SF---EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----------------------------YDAP  528 (1103)
Q Consensus       480 ~~---~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----------------------------~~~~  528 (1103)
                      .+   .+|...|.+++|++  ++.+|++++.||.|++||+.+.+....                            ...+
T Consensus       153 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  230 (366)
T 3k26_A          153 IFGGVEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIH  230 (366)
T ss_dssp             EECSTTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSC
T ss_pred             EecccccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCC
Confidence            88   78999999999965  678999999999999999987654322                            2237


Q ss_pred             CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--------------EEEEecccccCCceEEEEEcCC--CCE
Q 001310          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--------------KRTYQGLQLQHNSVSVVHFDTA--KDQ  592 (1103)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~~~v~~~~~~~~--~~~  592 (1103)
                      ...|.+++|+  ++++++++.    ++.|++||+.++..              +..+..|.   ..|.+++|+|+  +++
T Consensus       231 ~~~v~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~~~  301 (366)
T 3k26_A          231 RNYVDCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQ---CDIWYMRFSMDFWQKM  301 (366)
T ss_dssp             SSCCCEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSS---CCSSCCCCEECTTSSE
T ss_pred             cceEEEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccC---CcEEEEEEcCCCCCcE
Confidence            7889999998  778988875    66799999987744              66777766   78999999999  999


Q ss_pred             EEEEeCCCcEEEEECCCCe----eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          593 ILAAGDDHVIKIWDMNKVQ----LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       593 l~~~~~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      |++++.||.|++||+.+++    ....+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus       302 l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          302 LALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             EEEECTTSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred             EEEEecCCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence            9999999999999999875    44467666545679999999999999999999999999975

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=3.3e-34  Score=330.77  Aligned_cols=304  Identities=17%  Similarity=0.191  Sum_probs=238.9

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ...+...+|...|+|++|+|.+..+||+|+.||+|+|||+.+++.....                 .+.+|.+.|++++|
T Consensus       110 ~~~~~~~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~-----------------~~~gH~~~V~~l~f  172 (435)
T 4e54_B          110 RILQKAAPFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFI-----------------KGIGAGGSITGLKF  172 (435)
T ss_dssp             TSCCEEEECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEE-----------------CCCSSSCCCCEEEE
T ss_pred             eecccCCCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEE-----------------EccCCCCCEEEEEE
Confidence            3445667899999999999965448999999999999999887654321                 15689999999999


Q ss_pred             CC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          405 SP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       405 sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      +| ++.+|++|+.||+|++||++++. .........+...+.+++|+|+++  +|++|+.||.|++||+. ++.+..+.+
T Consensus       173 ~p~~~~~l~s~s~D~~v~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~-~~~~~~~~~  248 (435)
T 4e54_B          173 NPLNTNQFYASSMEGTTRLQDFKGNI-LRVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMD-GKELWNLRM  248 (435)
T ss_dssp             CSSCTTEEEEECSSSCEEEEETTSCE-EEEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESS-SCBCCCSBC
T ss_pred             eCCCCCEEEEEeCCCEEEEeeccCCc-eeEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccC-cceeEEEec
Confidence            98 78999999999999999998753 222212223445688999999999  89999999999999975 567788899


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE---EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEE
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEW  560 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iw  560 (1103)
                      |...|.+++|+|.. ..++++++.|+.|++||+.+.....   ....|...|.+++|+|+|++|++++.    ++.|++|
T Consensus       249 h~~~v~~v~~~p~~-~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iw  323 (435)
T 4e54_B          249 HKKKVTHVALNPCC-DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVY  323 (435)
T ss_dssp             CSSCEEEEEECTTC-SSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEE
T ss_pred             ccceEEeeeecCCC-ceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEE
Confidence            99999999997643 3588999999999999998766543   33567889999999999999999986    5669999


Q ss_pred             eCCCCeeEEEEeccccc---CCceEEEEEcCCCCEEEEEe------------CCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310          561 NESEGAIKRTYQGLQLQ---HNSVSVVHFDTAKDQILAAG------------DDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1103)
Q Consensus       561 d~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1103)
                      |+.++.....+..|...   ...+....|+|++..+++++            .++.|++||..+++.+..+..+. ...|
T Consensus       324 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~-~~~v  402 (435)
T 4e54_B          324 SASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPE-SSGI  402 (435)
T ss_dssp             ESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSS-CCCC
T ss_pred             ECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCC-CCcE
Confidence            99999888777665411   11233456777777766654            34679999999999988875432 3457


Q ss_pred             ceE-EEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310          626 PRI-CFNKNGTLLAVIANENRIKILETPESNS  656 (1103)
Q Consensus       626 ~~v-~~s~~g~~l~~~~~dg~i~iw~~~~~~~  656 (1103)
                      .++ +|+|+|++|++|+ |+.|+||++.+++.
T Consensus       403 ~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~  433 (435)
T 4e54_B          403 SSLNEFNPMGDTLASAM-GYHILIWSQQEART  433 (435)
T ss_dssp             CCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred             EEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence            776 6999999999876 78999999988754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=5.9e-33  Score=314.05  Aligned_cols=291  Identities=12%  Similarity=0.066  Sum_probs=246.8

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCC--eeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ--KLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +..|.++|++++|+|||+ +|++|+.|+.|+|||+.+++  .+..                   +.+|...|.+++|+|+
T Consensus         4 ~~~~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~~-------------------~~~h~~~v~~~~~~~~   63 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVHE-------------------LKEHNGQVTGVDWAPD   63 (372)
T ss_dssp             EESCSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEEE-------------------EECCSSCEEEEEEETT
T ss_pred             ecccCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeeee-------------------ecCCCCcccEEEEeCC
Confidence            456889999999999998 78999999999999999886  4433                   6689999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce---e-EEeec
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---T-YSFEG  483 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~-~~~~~  483 (1103)
                      +++|++++.|+.|++||+.+++... ...+.+|...|.+++|+|+++  ++++++.|+.|++||+.++..   . .....
T Consensus        64 ~~~l~~~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~  140 (372)
T 1k8k_C           64 SNRIVTCGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKP  140 (372)
T ss_dssp             TTEEEEEETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTT
T ss_pred             CCEEEEEcCCCeEEEEECCCCeeee-eEEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecc
Confidence            9999999999999999998876332 224567999999999999999  899999999999999998873   3 33367


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcC------------------CCCeeEEecCCCccEEEEEEccCCCEEE
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD------------------SLGARVDYDAPGLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~------------------~~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1103)
                      |...|.+++|++  ++.++++++.||.|++||+.                  .......+..+...+.+++|+|++++|+
T Consensus       141 ~~~~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  218 (372)
T 1k8k_C          141 IRSTVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVA  218 (372)
T ss_dssp             CCSCEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEE
T ss_pred             cCCCeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEE
Confidence            899999999965  66899999999999999953                  5566777888888999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC--CeeE----------
Q 001310          546 SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK--VQLL----------  613 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~----------  613 (1103)
                      +++.    ++.|++||+.+++.+..+..+.   ..+.+++|+|++.+++++ .|+.|++|++.+  ++..          
T Consensus       219 ~~~~----d~~i~i~d~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~  290 (372)
T 1k8k_C          219 WVSH----DSTVCLADADKKMAVATLASET---LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQ  290 (372)
T ss_dssp             EEET----TTEEEEEEGGGTTEEEEEECSS---CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--
T ss_pred             EEeC----CCEEEEEECCCCceeEEEccCC---CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCcccc
Confidence            9986    6679999999999999998877   899999999999877777 899999999987  4311          


Q ss_pred             ----------------------------EEEcCCCCCCCCceEEEe-cCC---CEEEEEECCCeEEEEEcCCC
Q 001310          614 ----------------------------TTIDAGGGLPENPRICFN-KNG---TLLAVIANENRIKILETPES  654 (1103)
Q Consensus       614 ----------------------------~~~~~~~~~~~v~~v~~s-~~g---~~l~~~~~dg~i~iw~~~~~  654 (1103)
                                                  ..+. .++...|.+++|. ++|   ++|++++.||.|++|++.++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~  362 (372)
T 1k8k_C          291 SSQRGLTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSL  362 (372)
T ss_dssp             ------CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHH
T ss_pred             chhhhcchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecCh
Confidence                                        1111 1345679999866 666   99999999999999998764

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=100.00  E-value=1.9e-33  Score=324.34  Aligned_cols=302  Identities=12%  Similarity=0.120  Sum_probs=231.9

Q ss_pred             EEEecccccCCceEEEEEcCC-CCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEEECCCeE
Q 001310          569 RTYQGLQLQHNSVSVVHFDTA-KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIANENRI  646 (1103)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~dg~i  646 (1103)
                      ....+|.   ..|++++|+|. ++.|++|+.||.|+|||+.+++....+...++...|.+++|+| ++++|++++.||+|
T Consensus       113 ~~~~~~~---~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v  189 (435)
T 4e54_B          113 QKAAPFD---RRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT  189 (435)
T ss_dssp             CEEEECS---SCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred             ccCCCCC---CCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence            3444555   78999999994 5689999999999999999887766666656677899999998 78999999999999


Q ss_pred             EEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceee
Q 001310          647 KILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSL  726 (1103)
Q Consensus       647 ~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~  726 (1103)
                      ++||+.++.... +                                                                  
T Consensus       190 ~iwd~~~~~~~~-~------------------------------------------------------------------  202 (435)
T 4e54_B          190 RLQDFKGNILRV-F------------------------------------------------------------------  202 (435)
T ss_dssp             EEEETTSCEEEE-E------------------------------------------------------------------
T ss_pred             EEeeccCCceeE-E------------------------------------------------------------------
Confidence            999986431100 0                                                                  


Q ss_pred             eccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCee
Q 001310          727 LLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVP  806 (1103)
Q Consensus       727 ~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  806 (1103)
                                     ...          +                                            .+...+.
T Consensus       203 ---------------~~~----------~--------------------------------------------~~~~~~~  213 (435)
T 4e54_B          203 ---------------ASS----------D--------------------------------------------TINIWFC  213 (435)
T ss_dssp             ---------------ECC----------S--------------------------------------------SCSCCCC
T ss_pred             ---------------ecc----------C--------------------------------------------CCCccEE
Confidence                           000          0                                            1344567


Q ss_pred             EEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE---e
Q 001310          807 CFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK---L  882 (1103)
Q Consensus       807 ~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~---l  882 (1103)
                      +++|+|++++|++++ ||.|++||+. ++.+..+.+|...|++++|+|++..+|++|+.|+.|++||+.+++....   .
T Consensus       214 ~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~  292 (435)
T 4e54_B          214 SLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYS  292 (435)
T ss_dssp             CEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBC
T ss_pred             EEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEe
Confidence            788999999999987 7999999986 5667788899999999999995556899999999999999998764433   3


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--------
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--------  954 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--------  954 (1103)
                      .+|...|++++|+|||++|++++.||.|++||+.++............ .. ....+....|+|++.+++++        
T Consensus       293 ~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~d~~~~  370 (435)
T 4e54_B          293 LPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHR-HF-QHLTPIKAAWHPRYNLIVVGRYPDPNFK  370 (435)
T ss_dssp             CBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCC-CC-SSSCCCBCEECSSSSCEEEECCCCTTSC
T ss_pred             eeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccceEEeccccc-cc-ccceeEEEEEcCCCCEEEEEEcCCCCeE
Confidence            579999999999999999999999999999999987654422111111 00 00123345566666666553        


Q ss_pred             -----eCCeEEEEECCCceEEEEeeCCCCcCeEEE-EEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310          955 -----HETHLAIYEAEELTCLKQWFPISSVPISQA-TFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus       955 -----~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l-~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
                           .++.|++||..+++.+..+..+|...|.++ +|+|||++|++|+ |++|+|||+++++..
T Consensus       371 ~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~r  434 (435)
T 4e54_B          371 SCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEARTR  434 (435)
T ss_dssp             CSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC-----
T ss_pred             EEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCeee
Confidence                 235799999999999998888899999987 6999999999876 889999999988754

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=100.00  E-value=7.2e-33  Score=314.50  Aligned_cols=307  Identities=16%  Similarity=0.168  Sum_probs=241.8

Q ss_pred             EEeCCCCeeEEEEecccccCCceEEEEEcCCC-CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCE
Q 001310          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK-DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTL  636 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~  636 (1103)
                      +|+....+....+.+|.   ..|.+++|+|++ +++++|+.||.|++||+.+++....+...++...|.+++|+| ++++
T Consensus        57 ~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~  133 (383)
T 3ei3_B           57 IRSLKSYKLHRTASPFD---RRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQ  133 (383)
T ss_dssp             HHHHTTCEEEEEECCCS---SCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEE
T ss_pred             cccccccceEEeccCCC---CCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCE
Confidence            44556667777888877   899999999999 899999999999999999998888887655567799999999 7899


Q ss_pred             EEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                      |++++.|+.|++||+.+. .+..+..                                                      
T Consensus       134 l~s~~~d~~i~iwd~~~~-~~~~~~~------------------------------------------------------  158 (383)
T 3ei3_B          134 LFVSSIRGATTLRDFSGS-VIQVFAK------------------------------------------------------  158 (383)
T ss_dssp             EEEEETTTEEEEEETTSC-EEEEEEC------------------------------------------------------
T ss_pred             EEEEeCCCEEEEEECCCC-ceEEEec------------------------------------------------------
Confidence            999999999999998742 1110000                                                      


Q ss_pred             ccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccC
Q 001310          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1103)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (1103)
                                                                                                      
T Consensus       159 --------------------------------------------------------------------------------  158 (383)
T 3ei3_B          159 --------------------------------------------------------------------------------  158 (383)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC-EEEEEeCCCeEEEEEcC
Q 001310          797 TDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VIAIGMDDSTILIYNAR  874 (1103)
Q Consensus       797 ~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~lasg~~dg~v~iwd~~  874 (1103)
                       ..++...|.+++|+|++++|++++ |+.|++||+ +++.+..+..|...|.+++|+| +++ +|++|+.||.|++||+.
T Consensus       159 -~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~  235 (383)
T 3ei3_B          159 -TDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLR  235 (383)
T ss_dssp             -CCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGG
T ss_pred             -cCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCC
Confidence             001456778888888888888887 688888888 5777888889999999999999 777 99999999999999999


Q ss_pred             C----ceeEEEeccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeec--CCCccc-------CCCCce
Q 001310          875 S----SEVISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT--PDGVMT-------LAPSET  940 (1103)
Q Consensus       875 ~----~~~~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~--~~~~~~-------~~~~v~  940 (1103)
                      +    +..+..+ +|.+.|.+++|+| ++++|++++.|+.|++||+.+++.........  ...+..       ....+.
T Consensus       236 ~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  314 (383)
T 3ei3_B          236 NIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLI  314 (383)
T ss_dssp             GCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEE
T ss_pred             CCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceEEeccCCCCce
Confidence            8    5666666 6999999999999 99999999999999999999876433211111  011111       012344


Q ss_pred             EEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCC-CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          941 HIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       941 ~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      .++|+|||++ ..+.|+.|++||+.+++.+..+... |...+..++|+||+++|++++ ||.|++||+++
T Consensus       315 ~~~~s~dg~~-s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~  382 (383)
T 3ei3_B          315 VAGRYPDDQL-LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED  382 (383)
T ss_dssp             EEECBCCTTT-CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred             EEEecCCccc-ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence            4566666666 2247899999999999998885432 467788889999999999997 99999999874

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=3.8e-33  Score=320.12  Aligned_cols=347  Identities=11%  Similarity=0.121  Sum_probs=241.2

Q ss_pred             eEEEEeCCCCeeEEEEecccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCCeeEEEEcC-----------CCCCC
Q 001310          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKVQLLTTIDA-----------GGGLP  623 (1103)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~  623 (1103)
                      .+++|+...++....+.+|.   ..|.+++|+| ++++|++++.||.|++||+.+++....+..           ..+..
T Consensus        24 ~~~v~~~~~~~~~~~~~~h~---~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  100 (408)
T 4a11_B           24 TRRVLGLELNKDRDVERIHG---GGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY  100 (408)
T ss_dssp             HHHHHTEEECTTEEECCCCS---SCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred             cceeeccccCcceeeeeccC---CcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence            36778887788888888877   9999999999 999999999999999999998765443321           12445


Q ss_pred             CCceEEEec-CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce
Q 001310          624 ENPRICFNK-NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI  702 (1103)
Q Consensus       624 ~v~~v~~s~-~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~  702 (1103)
                      .|.+++|+| +++++++++.|+.|++|++.+++....+.                                         
T Consensus       101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----------------------------------------  139 (408)
T 4a11_B          101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFN-----------------------------------------  139 (408)
T ss_dssp             CEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEE-----------------------------------------
T ss_pred             cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceecc-----------------------------------------
Confidence            789999999 77899999999999999987653332211                                         


Q ss_pred             eeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCee
Q 001310          703 SVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRL  782 (1103)
Q Consensus       703 s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~  782 (1103)
                                                                                                      
T Consensus       140 --------------------------------------------------------------------------------  139 (408)
T 4a11_B          140 --------------------------------------------------------------------------------  139 (408)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCCCCCceeeccCCCCCCCCCeeEEEEec---CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC-
Q 001310          783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSK---NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-  857 (1103)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~---d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-  857 (1103)
                                        +...+.++++++   ++.++++++ ++.|++||+.+++.+..+..|...|++++|+| +++ 
T Consensus       140 ------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~  200 (408)
T 4a11_B          140 ------------------FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDY  200 (408)
T ss_dssp             ------------------CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTT
T ss_pred             ------------------CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCc
Confidence                              122233344444   444677776 68899999998988899999999999999999 666 


Q ss_pred             EEEEEeCCCeEEEEEcCCce-eEEEe---------------ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCcee
Q 001310          858 VIAIGMDDSTILIYNARSSE-VISKL---------------EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQ  921 (1103)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~-~~~~l---------------~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~  921 (1103)
                      +|++|+.||.|++||+.++. .+..+               .+|...|.+++|+|++++|++++.||.|++||+.+++..
T Consensus       201 ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~  280 (408)
T 4a11_B          201 ILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT  280 (408)
T ss_dssp             EEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC
T ss_pred             EEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc
Confidence            69999999999999998765 34444               578999999999999999999999999999999987643


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCc
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1001 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~ 1001 (1103)
                      ............  ..........+.+.+++++.++.|++||+.+++.+.. +.+|...|++++|+||+++|++++.||.
T Consensus       281 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~  357 (408)
T 4a11_B          281 LVNYGKVCNNSK--KGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITM-LKGHYKTVDCCVFQSNFQELYSGSRDCN  357 (408)
T ss_dssp             CCCCCCCCCCCS--SCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEE-ECCCSSCEEEEEEETTTTEEEEEETTSC
T ss_pred             eecccccccccc--ccceeEEecCCCceEEEEecCCEEEEEECcCCcceee-eccCCCeEEEEEEcCCCCEEEEECCCCe
Confidence            321111111111  1123334444556666668999999999999999987 5689999999999999999999999999


Q ss_pred             EEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310         1002 LSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1002 v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                      |++||+.+++.+.......                        ......|.....+.+.+.++.+++|+..
T Consensus       358 i~iw~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          358 ILAWVPSLYEPVPDDDETT------------------------TKSQLNPAFEDAWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             EEEEEECC---------------------------------------------------------------
T ss_pred             EEEEeCCCCCccCCCCceE------------------------eccccccccceeecccCccCceeecCCc
Confidence            9999999998765444111                        0111222224567778899999999863

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3e-32  Score=307.82  Aligned_cols=289  Identities=12%  Similarity=0.146  Sum_probs=259.3

Q ss_pred             eeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310          390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1103)
Q Consensus       390 ~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i  469 (1103)
                      ..+.+|.+.|++++|+|++++||+++.||.|++||+.+++.+.   .+.+|...|.+++|+|+++  +|++++.|+.|++
T Consensus        26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i  100 (369)
T 3zwl_B           26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL  100 (369)
T ss_dssp             EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred             EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence            3478999999999999999999999999999999999987554   7889999999999999999  8999999999999


Q ss_pred             EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC-----CeEEEEEcCCCCe-----------eEEecCCCc--c
Q 001310          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-----GKIKAWLYDSLGA-----------RVDYDAPGL--G  531 (1103)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-----g~i~iwd~~~~~~-----------~~~~~~~~~--~  531 (1103)
                      ||+.+++.+..+. +...|.+++|++  ++.++++++.+     |.|++||+.....           ...+..+..  .
T Consensus       101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (369)
T 3zwl_B          101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA  177 (369)
T ss_dssp             EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred             EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence            9999999999888 889999999965  67899999999     9999999976542           223344444  8


Q ss_pred             EEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001310          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1103)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  610 (1103)
                      +.+++|+|+++++++++.    ++.|++||+.+ ++.+..+..|.   ..|.+++|+|++++|++++.||.|++||+.++
T Consensus       178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~  250 (369)
T 3zwl_B          178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHE---KSISDMQFSPDLTYFITSSRDTNSFLVDVSTL  250 (369)
T ss_dssp             EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTC
T ss_pred             eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCC---CceeEEEECCCCCEEEEecCCceEEEEECCCC
Confidence            999999999999999876    66799999998 78888888877   89999999999999999999999999999999


Q ss_pred             eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC--------------eEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310          611 QLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN--------------RIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1103)
Q Consensus       611 ~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg--------------~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  676 (1103)
                      +.+..+...   ..+..++|+|+++++++++.++              .+++|+..+++.+..+.+|...|.+++++   
T Consensus       251 ~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~v~~~~~s---  324 (369)
T 3zwl_B          251 QVLKKYETD---CPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAIS---  324 (369)
T ss_dssp             CEEEEEECS---SCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEECCSSCEEEEEEC---
T ss_pred             ceeeeecCC---CCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheecccCcEEEEEEC---
Confidence            999888743   4589999999999999999988              89999999999999999999999999997   


Q ss_pred             ceeeeeccCCceEecCCCCCCCccceeecccccccccccccc
Q 001310          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1103)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1103)
                                         |+++++++++.|+.|++|++...
T Consensus       325 -------------------~~~~~l~s~~~dg~v~iw~~~~~  347 (369)
T 3zwl_B          325 -------------------PQGTSYASGGEDGFIRLHHFEKS  347 (369)
T ss_dssp             -------------------TTSSEEEEEETTSEEEEEEECHH
T ss_pred             -------------------CCCCEEEEEcCCCeEEEEECccc
Confidence                               78899999999999999998753

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=2.3e-33  Score=314.25  Aligned_cols=299  Identities=11%  Similarity=0.121  Sum_probs=232.0

Q ss_pred             cCceEEEecCCCceEEEEEcCC-------CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNV-------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d-------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      .+|++++|+|||+ +|++|+.|       +.|+||++..+.......+         .......+.+|...|.+++++  
T Consensus        15 ~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~---------~~~~~~~l~~~~~~v~s~~~~--   82 (365)
T 4h5i_A           15 YPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQF---------HILSEFALEDNDDSPTAIDAS--   82 (365)
T ss_dssp             SCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHE---------EEEEEEECCTTSCCCCEEEEE--
T ss_pred             CCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeee---------eeeeEEEccCCCCceEEEEeC--
Confidence            4899999999998 78888653       3599999987654321111         111223377899999888764  


Q ss_pred             CCEEEEE-----------eCCCeEEEEEecCCCcccc-ce-----EeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          408 GSLLGVA-----------YSKHIVQLYAYHGGSDARQ-QL-----EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       408 g~~las~-----------~~d~~i~iwd~~~~~~~~~-~~-----~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      ++.+++|           +.|+.+++|++.++..... ..     ....+...+.+++|||||+.+.+++++.|++|+||
T Consensus        83 ~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iw  162 (365)
T 4h5i_A           83 KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRII  162 (365)
T ss_dssp             TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEE
T ss_pred             CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEe
Confidence            5566665           3567899999987643211 11     12234556899999999996556677789999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE--ecCCCccEEEEEEccCCCEEEEEe
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--YDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      |+.+++++..+. |...|.+++|+|  ++.++++++.+ .+++|+..++.....  ...+...+.+++|+|+++++++++
T Consensus       163 d~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~~s  238 (365)
T 4h5i_A          163 DPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIAAS  238 (365)
T ss_dssp             ETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEEEE
T ss_pred             ECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEEEe
Confidence            999999999886 778899999954  77899998855 556666666665543  345677899999999999999998


Q ss_pred             cCCCCceeEEEEeCCCCee----EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE-cCCCCCC
Q 001310          549 TSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI-DAGGGLP  623 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~  623 (1103)
                      .++.....+++|+...+..    ...+.+|.   ..|.+++|+|++++|++|+.|++|+|||+.+++++..+ ..|  ..
T Consensus       239 ~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~---~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~  313 (365)
T 4h5i_A          239 LKKGKGIVLTKISIKSGNTSVLRSKQVTNRF---KGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF  313 (365)
T ss_dssp             ESSSCCEEEEEEEEETTEEEEEEEEEEESSC---SCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred             cCCcceeEEeecccccceecceeeeeecCCC---CCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence            8766566789999877654    23455555   88999999999999999999999999999999999876 455  45


Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      .|++++|+|||++|++++.|++|+||+++..
T Consensus       314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          314 AITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            7999999999999999999999999999754

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=100.00  E-value=1.4e-32  Score=307.96  Aligned_cols=203  Identities=12%  Similarity=0.121  Sum_probs=172.1

Q ss_pred             CCCCeeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310          801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1103)
                      +...+.+++|||||+++++++   |++|+|||+.+++.+..+. |...|.+++|+| |+++|++++.+ .+++|+..+++
T Consensus       132 ~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~-~~~~V~~v~fsp-dg~~l~s~s~~-~~~~~~~~~~~  208 (365)
T 4h5i_A          132 ADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIE-TRGEVKDLHFST-DGKVVAYITGS-SLEVISTVTGS  208 (365)
T ss_dssp             TTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSSEEEEECSS-CEEEEETTTCC
T ss_pred             cccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeC-CCCceEEEEEcc-CCceEEeccce-eEEEEEeccCc
Confidence            556789999999999987664   6899999999999998886 778899999999 89999999855 56777777776


Q ss_pred             eEE--EeccCCCCEEEEEEccCCCEEEEEeCCC----eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE
Q 001310          878 VIS--KLEGHSKRVTGLVFSDALNILVSSGGDA----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1103)
Q Consensus       878 ~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~dg----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  951 (1103)
                      .+.  ...+|...|.+++|+||++++++++.|+    .+++|++..+..... ......++..   .|.+++|||||++|
T Consensus       209 ~~~~~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~---~V~~~~~Spdg~~l  284 (365)
T 4h5i_A          209 CIARKTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVL-RSKQVTNRFK---GITSMDVDMKGELA  284 (365)
T ss_dssp             EEEEECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEE-EEEEEESSCS---CEEEEEECTTSCEE
T ss_pred             ceeeeecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecce-eeeeecCCCC---CeEeEEECCCCCce
Confidence            553  3456899999999999999999999887    688999887653322 1223334443   79999999999999


Q ss_pred             EEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310          952 LLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       952 ~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      |+| .|++|+|||+.+++++..+..+|...|++++|||||++||+||.|++|+|||+...
T Consensus       285 asgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          285 VLASNDNSIALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEcCCCEEEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            995 88999999999999999878899999999999999999999999999999999654

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.9e-32  Score=312.51  Aligned_cols=299  Identities=16%  Similarity=0.229  Sum_probs=246.3

Q ss_pred             ecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       329 ~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      ...+|.+.+.+..+++++.. +++++.|+.|++||+.+++.....                  ...|...|.+++|+|++
T Consensus        86 ~~~~~~~~~~~~~~~~s~~~-l~~~~~d~~v~lw~~~~~~~~~~~------------------~~~~~~~v~~v~~s~~~  146 (401)
T 4aez_A           86 DAPGIIDDYYLNLLDWSNLN-VVAVALERNVYVWNADSGSVSALA------------------ETDESTYVASVKWSHDG  146 (401)
T ss_dssp             ECTTCCCCTTCBCEEECTTS-EEEEEETTEEEEEETTTCCEEEEE------------------ECCTTCCEEEEEECTTS
T ss_pred             eCCCCcCCceEEEEeecCCC-EEEEECCCeEEEeeCCCCcEeEee------------------ecCCCCCEEEEEECCCC
Confidence            34577777655444444454 566778999999999999876541                  22388999999999999


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-CCceeEEeecCCCc
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSRTYSFEGHGAP  487 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~~~~~~  487 (1103)
                      ++|++|+.||.|++||+.+++.+.   .+.+|...|.+++|+  +.  .+++++.|+.|++||+. .+..+..+.+|...
T Consensus       147 ~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  219 (401)
T 4aez_A          147 SFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGHSSE  219 (401)
T ss_dssp             SEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSC
T ss_pred             CEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCCCCC
Confidence            999999999999999999987555   678999999999994  45  79999999999999998 56778889999999


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1103)
                      |.+++|++  ++.+|++++.||.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+++.
T Consensus       220 v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~~~~  296 (401)
T 4aez_A          220 VCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAATGAR  296 (401)
T ss_dssp             EEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTTCCE
T ss_pred             eeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCCCCE
Confidence            99999966  6789999999999999999999888889899999999999998765555432 12377899999999999


Q ss_pred             EEEEecccccCCceEEEEEcCCCCEEEEE--eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAA--GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1103)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~  645 (1103)
                      +..+.. .   ..+.+++|+|+++.++++  +.||.|++||+.+++.........+...|.+++|+|+|++|++++.||.
T Consensus       297 ~~~~~~-~---~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg~  372 (401)
T 4aez_A          297 VNTVDA-G---SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDEN  372 (401)
T ss_dssp             EEEEEC-S---SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTSE
T ss_pred             EEEEeC-C---CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCCc
Confidence            888864 2   589999999999999995  4899999999999777665443344567999999999999999999999


Q ss_pred             EEEEEcCCCCeeEec
Q 001310          646 IKILETPESNSVDAA  660 (1103)
Q Consensus       646 i~iw~~~~~~~~~~~  660 (1103)
                      |++|++.+++.+...
T Consensus       373 i~iw~~~~~~~~~~~  387 (401)
T 4aez_A          373 LKFWRVYDGDHVKRP  387 (401)
T ss_dssp             EEEEECCC-------
T ss_pred             EEEEECCCCcccccc
Confidence            999999988766543

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=3.4e-33  Score=312.63  Aligned_cols=317  Identities=11%  Similarity=0.026  Sum_probs=249.0

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~  410 (1103)
                      +.-...|.+++|||||+ ++|+++.|++|+  |...++.                      +.+|...|.+++|+|||  
T Consensus        12 ~~~~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~~----------------------l~gh~~~v~~V~FsPdg--   64 (588)
T 2j04_A           12 KEFEDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAKD----------------------INCNSKNLFHVKEFPLE--   64 (588)
T ss_dssp             CCCSSSSCCEEECTTSC-EEEECSSSEEEE--EECCCSC----------------------CSSBGGGTEEEEEECCC--
T ss_pred             hHhhccEEEEEECCCCC-EEEEEcCCceee--cccccce----------------------ecCCCccEEEEEECCCC--
Confidence            44567999999999998 799999999999  7554432                      45799999999999999  


Q ss_pred             EEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC----
Q 001310          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA----  486 (1103)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----  486 (1103)
                           .++.+.+|+.+....+    .+ +|...|.+++|||||+  .|++++.||+|++||.++  ++..+. |..    
T Consensus        65 -----~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~  129 (588)
T 2j04_A           65 -----FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSS  129 (588)
T ss_dssp             -----CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE--EEEECC-CSSCSTT
T ss_pred             -----CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc--eeeecc-CCCcccc
Confidence                 4555555554432211    12 5688999999999999  799999999999999544  667777 665    


Q ss_pred             -ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-------eEEe----cCCCccEEEEEEccCCCEEEEEecCCCCc
Q 001310          487 -PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-------RVDY----DAPGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1103)
Q Consensus       487 -~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-------~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1103)
                       .|.+++|+|  ||++|++|+.||+|++||+..+..       ...+    .+|...|.+++|+|||  +++++.    +
T Consensus       130 ~sv~svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D  201 (588)
T 2j04_A          130 RTYHCFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----N  201 (588)
T ss_dssp             TCEEEEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----T
T ss_pred             ccEEEEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----C
Confidence             499999955  789999999999999999998753       3444    5667799999999999  666654    6


Q ss_pred             eeEEEEeCCCCee---EEEEe-cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          555 SFLVEWNESEGAI---KRTYQ-GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       555 ~~i~iwd~~~~~~---~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                      +.+++||+.++..   .+.+. +|.   ..|.+++|+  ++.+++++ +++|++||+.+++......+|  ...+..++|
T Consensus       202 ~tVrlWd~~~~~~~~~~~tL~~~h~---~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~gh--~~~V~~va~  273 (588)
T 2j04_A          202 NSVFSMTVSASSHQPVSRMIQNASR---RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTGS--LENFHIIPL  273 (588)
T ss_dssp             CCEEEECCCSSSSCCCEEEEECCCS---SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECSC--CSCCCEEEE
T ss_pred             CeEEEEECCCCccccceeeeccccc---CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcCC--CceEEEEEe
Confidence            6799999988773   34564 554   789999999  58888887 699999999988874444343  567999999


Q ss_pred             --ecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310          631 --NKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1103)
Q Consensus       631 --s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1103)
                        +|++..+++++.+|+ ++|....                +++                      +||+..+++.  |+
T Consensus       274 ~~s~d~~~La~a~edG~-klw~~d~----------------~~~----------------------spd~~l~a~~--d~  312 (588)
T 2j04_A          274 NHEKESTILLMSNKTSY-KVLLEDE----------------LHV----------------------TADNIIAPYL--EK  312 (588)
T ss_dssp             TTCSSCEEEEECSSCEE-EEEESSS----------------EEE----------------------ECCCSSHHHH--HH
T ss_pred             eeCCCCCEEEEEcCCCC-EEEeecc----------------EEE----------------------CCCceEEEEc--CC
Confidence              999999999999999 9998771                223                      3777777775  89


Q ss_pred             ccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec
Q 001310          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS  754 (1103)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~  754 (1103)
                      ++++|+.......        ...+...|.+++|||||+.+++++.
T Consensus       313 ~v~lW~~~g~~l~--------~~~~~~~I~~va~SPdG~~lA~~~~  350 (588)
T 2j04_A          313 KFKKWSTIWNEFN--------NYETTLVIHGISLSPDGYSIAIVYD  350 (588)
T ss_dssp             HHHHTTTTTTSSS--------SSCCEEEEEEEEECTTSSEEEEEEE
T ss_pred             EEEEEECCCCcee--------eeccceEEEEEEECCCCCEEEEEEe
Confidence            9999997533211        1123567999999999998887765

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=1.8e-32  Score=298.21  Aligned_cols=254  Identities=13%  Similarity=0.156  Sum_probs=211.7

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC--CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      +.++.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++  +.+.+                   +.+|.+.|.+++|
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~~~~-------------------l~gH~~~V~~v~~   61 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVDW   61 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCCCEE-------------------ECCCSSCEEEEEE
T ss_pred             ceeccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEEEEE-------------------EccccCCeEEEEe
Confidence            356789999999999999998 6999999999999999754  33332                   7799999999999


Q ss_pred             CCC--CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCc--ee
Q 001310          405 SPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RT  478 (1103)
Q Consensus       405 spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~  478 (1103)
                      +|+  +++||+|+.|++|+|||+.+++. .....+.+|...|.+++|+|+  +.  +|++++.|++|++||+.++.  ..
T Consensus        62 s~~~~g~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~  138 (297)
T 2pm7_B           62 AHPKFGTILASCSYDGKVMIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSP  138 (297)
T ss_dssp             CCGGGCSEEEEEETTTEEEEEEBSSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCC
T ss_pred             cCCCcCCEEEEEcCCCEEEEEEcCCCce-EEEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceee
Confidence            874  89999999999999999998742 223367789999999999998  77  89999999999999998764  24


Q ss_pred             EEeecCCCceEEEEeeecC-----------CccEEEEEECCCeEEEEEcCCCC----eeEEecCCCccEEEEEEccCC--
Q 001310          479 YSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSANG--  541 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~dg--  541 (1103)
                      ..+.+|...|.+++|+|..           ++.+|++|+.|++|++||+++..    ....+..|...|.+++|+|++  
T Consensus       139 ~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~  218 (297)
T 2pm7_B          139 IIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLL  218 (297)
T ss_dssp             EEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSS
T ss_pred             eeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCC
Confidence            6778999999999998752           35799999999999999998766    445778899999999999995  


Q ss_pred             -CEEEEEecCCCCceeEEEEeCCCCe--eE-EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310          542 -RRLFSCGTSKEGESFLVEWNESEGA--IK-RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1103)
Q Consensus       542 -~~l~~~~~~~~~~~~i~iwd~~~~~--~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  608 (1103)
                       ++|++++.    ++.|++||+.++.  .. ..+. ...+...|.+++|+|++++|++++.||+|++|+..
T Consensus       219 ~~~las~s~----D~~v~iWd~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~  284 (297)
T 2pm7_B          219 RSYMASVSQ----DRTCIIWTQDNEQGPWKKTLLK-EEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN  284 (297)
T ss_dssp             SEEEEEEET----TSCEEEEEESSTTSCCEEEESS-SSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred             ceEEEEEEC----CCcEEEEEeCCCCCccceeeee-cccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence             78999876    6679999987643  11 2221 11224789999999999999999999999999976

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=100.00  E-value=5.5e-34  Score=323.05  Aligned_cols=289  Identities=12%  Similarity=0.063  Sum_probs=226.4

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC--CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +..|.+.|++++|+|||+ +||+|+.|+.|+|||+.++  +.+..                   +.+|...|.+++|+|+
T Consensus         7 ~~~~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~~s~~   66 (377)
T 3dwl_C            7 LHILPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHART-------------------FSDHDKIVTCVDWAPK   66 (377)
T ss_dssp             EEECSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECCC-------------------BCCCSSCEEEEEECTT
T ss_pred             EecCCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEEE-------------------EecCCceEEEEEEeCC
Confidence            445667999999999998 7899999999999999987  44433                   7789999999999999


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc---eeEEeec-
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS---RTYSFEG-  483 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~---~~~~~~~-  483 (1103)
                      +++|++++.|++|++||+.+++.......+.+|...|.+++|+|+++  +|++++.|+.|++||+.+++   ....+.+ 
T Consensus        67 ~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~  144 (377)
T 3dwl_C           67 SNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRP  144 (377)
T ss_dssp             TCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSS
T ss_pred             CCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecc
Confidence            99999999999999999998873344446788999999999999999  79999999999999999887   4778887 


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC------------------CCeeEEecCCCccEEEEEEccCCCEEE
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS------------------LGARVDYDAPGLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~------------------~~~~~~~~~~~~~i~~~~~s~dg~~l~  545 (1103)
                      |...|.+++|++  ++.+|++++.||.|++||+..                  .+....+ .+...|.+++|+|++++|+
T Consensus       145 h~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~  221 (377)
T 3dwl_C          145 LRSTILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALA  221 (377)
T ss_dssp             CCSCEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEE
T ss_pred             cCCCeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEE
Confidence            999999999965  678999999999999999853                  2233344 7788999999999999999


Q ss_pred             EEecCCCCceeEEEEeCCCCee----EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe----------
Q 001310          546 SCGTSKEGESFLVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ----------  611 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~----------  611 (1103)
                      +++.    ++.|++||+.+++.    +..+.+|.   ..|.+++|+|++++|++++.++.+ +|+.....          
T Consensus       222 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~  293 (377)
T 3dwl_C          222 YAGH----DSSVTIAYPSAPEQPPRALITVKLSQ---LPLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAG  293 (377)
T ss_dssp             EEET----TTEEC-CEECSTTSCEEECCCEECSS---SCEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSC
T ss_pred             EEeC----CCcEEEEECCCCCCcceeeEeecCCC---CceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeeccc
Confidence            9976    66799999999987    77777777   899999999999998888776666 66654211          


Q ss_pred             -----------------------------eEEEEcC-----------CCCCCCCceEEEecC-CC---EEEEEECCCeEE
Q 001310          612 -----------------------------LLTTIDA-----------GGGLPENPRICFNKN-GT---LLAVIANENRIK  647 (1103)
Q Consensus       612 -----------------------------~~~~~~~-----------~~~~~~v~~v~~s~~-g~---~l~~~~~dg~i~  647 (1103)
                                                   .......           ..+...|.++++.++ +.   .+++++.||.|+
T Consensus       294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~  373 (377)
T 3dwl_C          294 TSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVV  373 (377)
T ss_dssp             CCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEE
T ss_pred             ccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEE
Confidence                                         0000000           014456888886653 33   699999999999


Q ss_pred             EEEc
Q 001310          648 ILET  651 (1103)
Q Consensus       648 iw~~  651 (1103)
                      +||+
T Consensus       374 iWdl  377 (377)
T 3dwl_C          374 LWTL  377 (377)
T ss_dssp             EECC
T ss_pred             EecC
Confidence            9985

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=7.7e-32  Score=309.51  Aligned_cols=289  Identities=16%  Similarity=0.259  Sum_probs=244.4

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      ..+.|+||+++  +||+|. |++|+|||+.+|+.+....                 +.+|...|++|+|+|||++||+|+
T Consensus       107 y~~~l~wS~~n--~lAvgl-d~tV~lWd~~tg~~~~~~~-----------------~~~~~~~V~sv~fspdg~~lasgs  166 (420)
T 4gga_A          107 YLNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGT  166 (420)
T ss_dssp             TCBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEE
T ss_pred             cceeEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCcEEEEEECCCCCEEEEEE
Confidence            56889999875  678875 8999999999998775422                 567889999999999999999999


Q ss_pred             CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeecCCCceEEEEee
Q 001310          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPH  494 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~  494 (1103)
                      .||+|+|||+.+++.+.   .+.+|...+.+++++  +.  ++++|+.|+.+++||.... ..+..+.+|...+..+.+.
T Consensus       167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~  239 (420)
T 4gga_A          167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA  239 (420)
T ss_dssp             TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred             CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence            99999999999987655   788999999998875  45  7999999999999998864 4567889999999999985


Q ss_pred             ecCCccEEEEEECCCeEEEEEcCCCCe----eEEecCCCccEEEEEEccCCCE-EEEEecCCCCceeEEEEeCCCCeeEE
Q 001310          495 AKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRR-LFSCGTSKEGESFLVEWNESEGAIKR  569 (1103)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~-l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1103)
                      +  ++.++++++.|+.+++|+..+++.    ......+...|.+++|+|++.. +++++.  ..++.|++||+.+++...
T Consensus       240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~  315 (420)
T 4gga_A          240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS  315 (420)
T ss_dssp             T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred             C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence            4  678999999999999999987653    3466778889999999997654 445443  347789999999999998


Q ss_pred             EEecccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310          570 TYQGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1103)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~  647 (1103)
                      .+..+.    .+.++.|+++++.+++++  .|+.|++||+.+++++..+.+|.  ..|.+++|+|||++|++++.|++|+
T Consensus       316 ~~~~~~----~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvr  389 (420)
T 4gga_A          316 AVDAHS----QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLR  389 (420)
T ss_dssp             EEECSS----CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEE
T ss_pred             eecccc----ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEE
Confidence            887654    788999999999998865  78999999999999999998764  5799999999999999999999999


Q ss_pred             EEEcCCCCeeEecc
Q 001310          648 ILETPESNSVDAAG  661 (1103)
Q Consensus       648 iw~~~~~~~~~~~~  661 (1103)
                      +||+.+..+.....
T Consensus       390 iWdv~~~~~~~~~~  403 (420)
T 4gga_A          390 LWRCFELDPARRRE  403 (420)
T ss_dssp             EECCSCSSCC----
T ss_pred             EEECCCCCccchhh
Confidence            99998765544443

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=100.00  E-value=1e-31  Score=329.80  Aligned_cols=212  Identities=18%  Similarity=0.302  Sum_probs=185.2

Q ss_pred             EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-----ceeEEeecCCCceEEEEeeecCCccEEEEEECCCe
Q 001310          436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK  510 (1103)
Q Consensus       436 ~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~  510 (1103)
                      .+.+|.+.|++++|+|++.. +|+||+.|++|++||+.++     .....+.+|...|.+++|++  ++.+|++|+.||+
T Consensus       377 ~l~~H~~~V~~v~~~~~~~~-~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~--~g~~l~sgs~Dg~  453 (694)
T 3dm0_A          377 TMRAHTDMVTAIATPIDNAD-IIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS--DGQFALSGSWDGE  453 (694)
T ss_dssp             EEECCSSCEEEEECCTTCCS-EEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECT--TSSEEEEEETTSE
T ss_pred             hcccCCceeEEEEecCCCCC-EEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECC--CCCEEEEEeCCCc
Confidence            57899999999999998654 8999999999999998763     45678899999999999965  7789999999999


Q ss_pred             EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCC
Q 001310          511 IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAK  590 (1103)
Q Consensus       511 i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1103)
                      |++||+.++.....+..|...|.+++|+|++++|++++.    ++.|++||...............|...|.+++|+|++
T Consensus       454 v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~  529 (694)
T 3dm0_A          454 LRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASR----DRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNT  529 (694)
T ss_dssp             EEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCS
T ss_pred             EEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeC----CCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCC
Confidence            999999999988899999999999999999999999986    5669999987665544444333445889999999986


Q ss_pred             --CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCe
Q 001310          591 --DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS  656 (1103)
Q Consensus       591 --~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~  656 (1103)
                        ..+++++.|++|++||+.+++....+..|.  ..|.+++|+|++++|++++.|+.|++||+.+++.
T Consensus       530 ~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~  595 (694)
T 3dm0_A          530 LQPTIVSASWDKTVKVWNLSNCKLRSTLAGHT--GYVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKK  595 (694)
T ss_dssp             SSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSEEEEEETTSBCEEEETTTTEE
T ss_pred             CcceEEEEeCCCeEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCce
Confidence              579999999999999999999998888764  4699999999999999999999999999987643

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=100.00  E-value=2.6e-32  Score=311.85  Aligned_cols=306  Identities=9%  Similarity=0.058  Sum_probs=256.8

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc---cccceEeccccccEEEEEEecC----C---CceEEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD---ARQQLEIDAHVGNVNDLAFSAP----C---KQISVIT  460 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~---~~~~~~l~~h~~~v~~~~~s~d----~---~~~~l~s  460 (1103)
                      .+.+|.+.|.+++|+|  ++|++|+.||+|++||+.+++.   ......+.+|...|.+++|+|+    +   +  +|++
T Consensus        11 ~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~s   86 (397)
T 1sq9_A           11 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVAT   86 (397)
T ss_dssp             ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEEE
T ss_pred             hhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEEE
Confidence            4789999999999999  8999999999999999998761   1123367799999999999999    8   7  8999


Q ss_pred             EcCCCceEEEeCCCCce-----eEEeecC-----CCceEEEEeeec--CCccE-EEEEECCCeEEEEEcCC------CCe
Q 001310          461 CGDDKTIKVWDAVTGSR-----TYSFEGH-----GAPVYSLCPHAK--ENIHF-IFSISVDGKIKAWLYDS------LGA  521 (1103)
Q Consensus       461 ~~~d~~i~iwd~~~~~~-----~~~~~~~-----~~~v~~~~~~~~--~~~~~-l~s~~~dg~i~iwd~~~------~~~  521 (1103)
                      ++.|+.|++||+.+++.     +..+..|     ...|.+++|++.  +++.+ |++++.||.|++||+..      ...
T Consensus        87 ~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  166 (397)
T 1sq9_A           87 TSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLT  166 (397)
T ss_dssp             EETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTT
T ss_pred             EcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccce
Confidence            99999999999999987     8889888     599999999732  46778 99999999999999988      555


Q ss_pred             eE-----Ee-------cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec---ccccCCceEEEEE
Q 001310          522 RV-----DY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG---LQLQHNSVSVVHF  586 (1103)
Q Consensus       522 ~~-----~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~~~v~~~~~  586 (1103)
                      ..     .+       ..+...+.+++|+|++ ++++++.    ++.|++||+.+++.+..+..   |......+.+++|
T Consensus       167 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~  241 (397)
T 1sq9_A          167 LNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF  241 (397)
T ss_dssp             TCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEE
T ss_pred             eeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCCccceEEE
Confidence            44     55       4477889999999999 8888865    66799999999999999988   6111289999999


Q ss_pred             cCCCCEEEEEeCC---CcEEEEECCCCeeEEEEcCCC-----------CCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          587 DTAKDQILAAGDD---HVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       587 ~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      +|++++|++++.|   |.|++||+.+++.+..+....           +...|.+++|+|++++|++++.|+.|++||+.
T Consensus       242 ~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  321 (397)
T 1sq9_A          242 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK  321 (397)
T ss_dssp             CSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETT
T ss_pred             CCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcC
Confidence            9999999999999   999999999999998887611           24568999999999999999999999999999


Q ss_pred             CCCeeEecc------cc---------------ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310          653 ESNSVDAAG------VL---------------SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1103)
Q Consensus       653 ~~~~~~~~~------~~---------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1103)
                      +++.+..+.      .|               ...|.+++++|++..++.+            ..+++++++++.|+.|+
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~------------~~~~~~l~s~~~dg~i~  389 (397)
T 1sq9_A          322 TKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMG------------ADLNESLCCVCLDRSIR  389 (397)
T ss_dssp             TTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTT------------CTTSCEEEEEETTTEEE
T ss_pred             CCceeEEEecccCcccchhhhhccccccccccCCceeEEEecccccccccc------------ccccceEEEecCCCcEE
Confidence            999988888      77               8889999998554322111            12337899999999999


Q ss_pred             cccccc
Q 001310          712 VEKPLF  717 (1103)
Q Consensus       712 ~w~~~~  717 (1103)
                      +|++..
T Consensus       390 iw~~~~  395 (397)
T 1sq9_A          390 WFREAG  395 (397)
T ss_dssp             EEEEEC
T ss_pred             EEEcCC
Confidence            999864

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=100.00  E-value=5.2e-32  Score=294.52  Aligned_cols=252  Identities=17%  Similarity=0.296  Sum_probs=213.2

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  469 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i  469 (1103)
                      +.+|.+.|.+++|+|||++||+|+.|++|+|||+.++. ......+.+|.+.|.+++|+++  ++  +|++|+.|++|++
T Consensus         5 ~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-~~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~i   81 (297)
T 2pm7_B            5 ANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVMI   81 (297)
T ss_dssp             CCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-BCCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEEE
T ss_pred             ccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-cEEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEEE
Confidence            77899999999999999999999999999999997542 1233478899999999999864  77  8999999999999


Q ss_pred             EeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCccEEEEEEccC-----
Q 001310          470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSAN-----  540 (1103)
Q Consensus       470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~d-----  540 (1103)
                      ||+.+++  .+..+.+|...|.+++|+|..++.+|++++.||.|++||++....  ...+..|...+.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            9999874  567788999999999998875578999999999999999987642  4567788889999999997     


Q ss_pred             --------CCEEEEEecCCCCceeEEEEeCCCCe----eEEEEecccccCCceEEEEEcCCC---CEEEEEeCCCcEEEE
Q 001310          541 --------GRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIW  605 (1103)
Q Consensus       541 --------g~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iw  605 (1103)
                              +++|++++.    ++.|++||+.+++    ....+.+|.   ..|.+++|+|++   .+|++++.|++|++|
T Consensus       162 ~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~---~~V~~v~~sp~~~~~~~las~s~D~~v~iW  234 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYMASVSQDRTCIIW  234 (297)
T ss_dssp             --------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCC---CceEEEEECCCCCCceEEEEEECCCcEEEE
Confidence                    578999886    5669999998765    556777777   899999999984   789999999999999


Q ss_pred             ECCCCe---eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      |+.++.   ....+....+...|.+++|+|+|++|++++.|+.|++|+...
T Consensus       235 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~  285 (297)
T 2pm7_B          235 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL  285 (297)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred             EeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence            998643   122332233445689999999999999999999999999763

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=100.00  E-value=9.6e-32  Score=308.41  Aligned_cols=348  Identities=14%  Similarity=0.129  Sum_probs=248.0

Q ss_pred             cceeEecccCCcCceEEEecC-CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~sp-dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      ......+.+|.+.|++++|+| +++ +|++|+.||.|+|||+.+++..........      .........+|...|.++
T Consensus        33 ~~~~~~~~~h~~~v~~~~~s~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~v~~~  105 (408)
T 4a11_B           33 NKDRDVERIHGGGINTLDIEPVEGR-YMLSGGSDGVIVLYDLENSSRQSYYTCKAV------CSIGRDHPDVHRYSVETV  105 (408)
T ss_dssp             CTTEEECCCCSSCEEEEEECTTTCC-EEEEEETTSCEEEEECCCCSSSSCEEECEE------EEECTTCTTCCSSCEEEE
T ss_pred             CcceeeeeccCCcEEEEEEecCCCC-EEEEEcCCCeEEEEECCCCcccceEecccc------ccccccccccCCCcEEEE
Confidence            345677889999999999999 998 799999999999999999876654221100      000011134699999999


Q ss_pred             EECC-CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC---CCceEEEEEcCCCceEEEeCCCCcee
Q 001310          403 VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       403 ~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d---~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      +|+| ++.+|++++.||.|++||+.+++...   .+ .+...+.+++|++.   +.  ++++++.|+.|++||+.+++.+
T Consensus       106 ~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~d~~~~~~~  179 (408)
T 4a11_B          106 QWYPHDTGMFTSSSFDKTLKVWDTNTLQTAD---VF-NFEETVYSHHMSPVSTKHC--LVAVGTRGPKVQLCDLKSGSCS  179 (408)
T ss_dssp             EECTTCTTCEEEEETTSEEEEEETTTTEEEE---EE-ECSSCEEEEEECSSCSSCC--EEEEEESSSSEEEEESSSSCCC
T ss_pred             EEccCCCcEEEEEeCCCeEEEeeCCCCccce---ec-cCCCceeeeEeecCCCCCc--EEEEEcCCCeEEEEeCCCccee
Confidence            9999 88899999999999999999886554   23 37778999999884   44  7999999999999999999999


Q ss_pred             EEeecCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCe-eEEe---------------cCCCccEEEEEEccCC
Q 001310          479 YSFEGHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA-RVDY---------------DAPGLGCTRMAYSANG  541 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~-~~~~---------------~~~~~~i~~~~~s~dg  541 (1103)
                      ..+.+|...|.+++|++  ++. ++++++.||.|++||++.... ...+               ..+...|.+++|+|++
T Consensus       180 ~~~~~~~~~v~~~~~~~--~~~~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~  257 (408)
T 4a11_B          180 HILQGHRQEILAVSWSP--RYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDG  257 (408)
T ss_dssp             EEECCCCSCEEEEEECS--SCTTEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTS
T ss_pred             eeecCCCCcEEEEEECC--CCCcEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCC
Confidence            99999999999999976  444 699999999999999987652 2233               4567789999999999


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc--cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC
Q 001310          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG  619 (1103)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~  619 (1103)
                      ++|++++.    ++.|++||+.+++....+..+..  ....+........+..+++++.++.|++||+.+++.+..+..|
T Consensus       258 ~~l~~~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~  333 (408)
T 4a11_B          258 LHLLTVGT----DNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH  333 (408)
T ss_dssp             SEEEEEET----TSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC
T ss_pred             CEEEEecC----CCeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC
Confidence            99999986    55699999999887655443321  0122222223344567778888999999999999999999866


Q ss_pred             CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310          620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1103)
Q Consensus       620 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1103)
                      .  ..|.+++|+|++++|++++.||.|++|++.+.+.+.........   ..+.                     .....
T Consensus       334 ~--~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~---------------------~~~~~  387 (408)
T 4a11_B          334 Y--KTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLN---------------------PAFED  387 (408)
T ss_dssp             S--SCEEEEEEETTTTEEEEEETTSCEEEEEECC----------------------------------------------
T ss_pred             C--CeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccc---------------------cccce
Confidence            4  56999999999999999999999999999988766544322111   1111                     12334


Q ss_pred             cceeecccccccccccc
Q 001310          700 PEISVEAENKSEVEKPL  716 (1103)
Q Consensus       700 ~l~s~~~d~~i~~w~~~  716 (1103)
                      ...+.+.++.+++|+..
T Consensus       388 ~~~~~~~~~~~~~W~~~  404 (408)
T 4a11_B          388 AWSSSDEEGGTSAWSHP  404 (408)
T ss_dssp             -----------------
T ss_pred             eecccCccCceeecCCc
Confidence            45567778999999854

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=100.00  E-value=1.7e-33  Score=315.00  Aligned_cols=330  Identities=10%  Similarity=0.032  Sum_probs=248.4

Q ss_pred             CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310          528 PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       528 ~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  607 (1103)
                      -...|.+++|+|||+++|+++.    |++|+  |...++.+   .+|.   ..|.+++|+|+|       .++.+.+|+.
T Consensus        14 ~~~~v~sv~~SpDG~~iASas~----D~TV~--d~~~~~~l---~gh~---~~v~~V~FsPdg-------~~~~~~~~~~   74 (588)
T 2j04_A           14 FEDWKNNLTWARDGTLYLTTFP----DISIG--QPKYAKDI---NCNS---KNLFHVKEFPLE-------FENKLDFELA   74 (588)
T ss_dssp             CSSSSCCEEECTTSCEEEECSS----SEEEE--EECCCSCC---SSBG---GGTEEEEEECCC-------CCCTTTTSCC
T ss_pred             hhccEEEEEECCCCCEEEEEcC----Cceee--ccccccee---cCCC---ccEEEEEECCCC-------CcceEEEEeC
Confidence            3467889999999999999876    66787  76555443   5666   899999999998       4555555554


Q ss_pred             CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCc
Q 001310          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  687 (1103)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  687 (1103)
                      .   ....+.... ...|.+++|||+|.+||+++.||.+++|+...  .+..+. |...+                    
T Consensus        75 ~---~~~~~~~~~-~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~--------------------  127 (588)
T 2j04_A           75 Q---QNGLLNSQP-VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNL--------------------  127 (588)
T ss_dssp             C---SSCSSTTSC-SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCS--------------------
T ss_pred             C---CceEeecCC-CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCcc--------------------
Confidence            3   222333222 46799999999999999999999999999543  222211 11100                    


Q ss_pred             eEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310          688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1103)
Q Consensus       688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~  767 (1103)
                                                                   ....+.+++|||||++|++++.||+|++|++....
T Consensus       128 ---------------------------------------------~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~  162 (588)
T 2j04_A          128 ---------------------------------------------SSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNS  162 (588)
T ss_dssp             ---------------------------------------------TTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCT
T ss_pred             ---------------------------------------------ccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCc
Confidence                                                         12458899999999999999999999999976532


Q ss_pred             cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee---eEEe-cCCC
Q 001310          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT---ILTI-MPPS  843 (1103)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~---~~~~-~~~~  843 (1103)
                      ...         ++.      ..+..+.....+|...|.+++|+||| +++++.|++|++||+.+++.   .+++ .+|.
T Consensus       163 l~~---------~~~------i~l~ti~~~~~gh~~~V~sVawSPdg-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~  226 (588)
T 2j04_A          163 ENT---------PEF------YFESSIRLSDAGSKDWVTHIVWYEDV-LVAALSNNSVFSMTVSASSHQPVSRMIQNASR  226 (588)
T ss_dssp             TTC---------CCC------EEEEEEECSCTTCCCCEEEEEEETTE-EEEEETTCCEEEECCCSSSSCCCEEEEECCCS
T ss_pred             ccc---------ccc------eeeeeeecccccccccEEEEEEcCCc-EEEEeCCCeEEEEECCCCccccceeeeccccc
Confidence            100         000      00112111123588999999999999 66666699999999988773   3566 4788


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEE--ccCCCEEEEEeCCCeEEEEEcCCCcee
Q 001310          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF--SDALNILVSSGGDAQIFVWDVDGWGIQ  921 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~--s~dg~~l~s~s~dg~I~iwd~~~~~~~  921 (1103)
                      ..|.+++|+   ++.||+++ +++|++||+.+++......+|.+.|..++|  +||+..|+++++||+ ++|..+.    
T Consensus       227 ~~V~svaFs---g~~LASa~-~~tIkLWd~~~~~~~~~~~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d~----  297 (588)
T 2j04_A          227 RKITDLKIV---DYKVVLTC-PGYVHKIDLKNYSISSLKTGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLEDE----  297 (588)
T ss_dssp             SCCCCEEEE---TTEEEEEC-SSEEEEEETTTTEEEEEECSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESSS----
T ss_pred             CcEEEEEEE---CCEEEEEe-CCeEEEEECCCCeEEEEEcCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeecc----
Confidence            899999998   37899887 699999999988874444489999999999  999999999999999 9999872    


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                                          ++|+||+..++.. |+++++|+...+. +.. +.+ ...|.+++|||||+.+|+++
T Consensus       298 --------------------~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~-~~~-~~~I~~va~SPdG~~lA~~~  349 (588)
T 2j04_A          298 --------------------LHVTADNIIAPYL-EKKFKKWSTIWNE-FNN-YET-TLVIHGISLSPDGYSIAIVY  349 (588)
T ss_dssp             --------------------EEEECCCSSHHHH-HHHHHHTTTTTTS-SSS-SCC-EEEEEEEEECTTSSEEEEEE
T ss_pred             --------------------EEECCCceEEEEc-CCEEEEEECCCCc-eee-ecc-ceEEEEEEECCCCCEEEEEE
Confidence                                5599999988875 9999999986554 332 333 77899999999999999886

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=100.00  E-value=7.7e-32  Score=304.91  Aligned_cols=290  Identities=12%  Similarity=0.100  Sum_probs=247.3

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +..|..+|.+++|+||+++||+++.|+.|++||+.+++ ......+.+|...|.+++|+|+++  +|++++.|+.|++||
T Consensus         4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~vwd   80 (372)
T 1k8k_C            4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWT   80 (372)
T ss_dssp             EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-EEEEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCc-EEeeeeecCCCCcccEEEEeCCCC--EEEEEcCCCeEEEEE
Confidence            44599999999999999999999999999999999875 113336789999999999999999  899999999999999


Q ss_pred             CCCCceeEE--eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe----eEEecCCCccEEEEEEccCCCEEE
Q 001310          472 AVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLF  545 (1103)
Q Consensus       472 ~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~  545 (1103)
                      +.+++....  +..|...|.+++|++  ++.+|++++.||.|++||++....    ......+...+.+++|+|++++++
T Consensus        81 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~  158 (372)
T 1k8k_C           81 LKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLA  158 (372)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEE
T ss_pred             CCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEE
Confidence            998876544  467999999999965  678999999999999999998773    233356788999999999999999


Q ss_pred             EEecCCCCceeEEEEeC------------------CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310          546 SCGTSKEGESFLVEWNE------------------SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       546 ~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  607 (1103)
                      +++.    ++.|++||+                  .+++.+..+.+|.   ..+.+++|+|+++++++++.||.|++||+
T Consensus       159 ~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~d~~i~i~d~  231 (372)
T 1k8k_C          159 AGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADA  231 (372)
T ss_dssp             EEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred             EEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCC---CeEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence            9986    566999995                  4678888888776   89999999999999999999999999999


Q ss_pred             CCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC--CCe-----------------------------
Q 001310          608 NKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE--SNS-----------------------------  656 (1103)
Q Consensus       608 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~--~~~-----------------------------  656 (1103)
                      .+++.+..+..+.  ..+.+++|+|++++++++ .|+.|++|++.+  +..                             
T Consensus       232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (372)
T 1k8k_C          232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK  308 (372)
T ss_dssp             GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCC
T ss_pred             CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhhcchhhhhhhcccc
Confidence            9999999988663  468999999999988887 899999999987  321                             


Q ss_pred             ---e------Eec-cccccceeeeEEecCCceeeeeccCCceEecCCCCCCC---ccceeeccccccccccccc
Q 001310          657 ---V------DAA-GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDV---KPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       657 ---~------~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~s~~~d~~i~~w~~~~  717 (1103)
                         .      ..+ .+|...|+++++.                     +++|   .++++++.||.|++|++..
T Consensus       309 ~~~~~~~~~~~~~~~~h~~~v~~~~~~---------------------~~~g~~~~~l~s~~~Dg~i~~W~~~~  361 (372)
T 1k8k_C          309 ASSEGSAAAGAGLDSLHKNSVSQISVL---------------------SGGKAKCSQFCTTGMDGGMSIWDVRS  361 (372)
T ss_dssp             C---------CCCSSSSSSCEEEEEEE---------------------ESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             cccccCccccccccccccCCcceeEEe---------------------cCCCcceeeEEEecCCCceEEEEecC
Confidence               0      222 4788888888876                     3566   8999999999999999864

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=100.00  E-value=1.2e-30  Score=288.00  Aligned_cols=282  Identities=16%  Similarity=0.268  Sum_probs=237.1

Q ss_pred             ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1103)
Q Consensus       337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~  416 (1103)
                      .++|+||+++  +||+|. |++|+|||+++|+++....                 +.+|...|.+++|+|++++||+|+.
T Consensus        28 ~~~l~WS~~~--~lAvg~-D~tV~iWd~~tg~~~~~~~-----------------~~~~~~~V~~v~~~~~~~~l~sgs~   87 (318)
T 4ggc_A           28 LNLVDWSSGN--VLAVAL-DNSVYLWSASSGDILQLLQ-----------------MEQPGEYISSVAWIKEGNYLAVGTS   87 (318)
T ss_dssp             CBCEEECTTS--EEEEEE-TTEEEEEETTTCCEEEEEE-----------------CCSTTCCEEEEEECTTSSEEEEEET
T ss_pred             ceEEEECCCC--EEEEEe-CCEEEEEECCCCCEEEEEE-----------------ecCCCCeEEEEEECCCCCEEEEEEC
Confidence            5789999987  577774 8999999999999876522                 5678999999999999999999999


Q ss_pred             CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEeecCCCceEEEEeee
Q 001310          417 KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFEGHGAPVYSLCPHA  495 (1103)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~~~~~~v~~~~~~~  495 (1103)
                      ||+|++||+.+++.+.   .+.+|...+.++.+  ++.  .+++++.++.+++|+..++ ..+..+.+|...+..+.+.+
T Consensus        88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (318)
T 4ggc_A           88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP  160 (318)
T ss_dssp             TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred             CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence            9999999999987655   67899998887665  456  7999999999999998876 45677889999999999854


Q ss_pred             cCCccEEEEEECCCeEEEEEcCCCCe----eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          496 KENIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       496 ~~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                        ++.++++++.||.|++||+.+++.    ......+...+.+++++|++..++.... +..++.|++||..........
T Consensus       161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~  237 (318)
T 4ggc_A          161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV  237 (318)
T ss_dssp             --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred             --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence              668999999999999999987653    3455667778999999998765543322 134778999999988876665


Q ss_pred             ecccccCCceEEEEEcCCCCEEEEEe--CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310          572 QGLQLQHNSVSVVHFDTAKDQILAAG--DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1103)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw  649 (1103)
                      ...    ..+..+.|+++++.+++++  .|+.|++||+.+++++..+.+|.  ..|.+++|+|+|++|++++.||+|++|
T Consensus       238 ~~~----~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iW  311 (318)
T 4ggc_A          238 DAH----SQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW  311 (318)
T ss_dssp             ECS----SCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred             cce----eeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence            543    5799999999999988765  79999999999999999998764  579999999999999999999999999


Q ss_pred             EcCCC
Q 001310          650 ETPES  654 (1103)
Q Consensus       650 ~~~~~  654 (1103)
                      |+.+.
T Consensus       312 d~~~~  316 (318)
T 4ggc_A          312 RCFEL  316 (318)
T ss_dssp             CCSCC
T ss_pred             ECCCC
Confidence            98754

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=100.00  E-value=1e-31  Score=303.11  Aligned_cols=293  Identities=17%  Similarity=0.225  Sum_probs=244.5

Q ss_pred             eccCCCccEEEEEECCC----CCEEEEEeCCCeEEEEEecCCCccccceEec--cccccEEEEEEecC----CCceEEEE
Q 001310          391 LVRDPGVSVNRVVWSPD----GSLLGVAYSKHIVQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAP----CKQISVIT  460 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spd----g~~las~~~d~~i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d----~~~~~l~s  460 (1103)
                      +..+|.+.|.+++|+|+    ...+++++.++.|++||+.+++.+.......  .|...|.+++|+|+    ++  +|++
T Consensus        13 ~~~~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~l~~   90 (366)
T 3k26_A           13 LKEDHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHP--LLAV   90 (366)
T ss_dssp             EECTTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCE--EEEE
T ss_pred             eecCCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCC--EEEE
Confidence            46689999999999984    4566666777799999999887655333222  26678999999999    55  8999


Q ss_pred             EcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe---cCCCccEEEEEE
Q 001310          461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY---DAPGLGCTRMAY  537 (1103)
Q Consensus       461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~---~~~~~~i~~~~~  537 (1103)
                      |+.||.|++||+.+++.+..+.+|...|.+++|++. ++.+|++++.||.|++||+.+++....+   ..+...|.+++|
T Consensus        91 ~~~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  169 (366)
T 3k26_A           91 AGSRGIIRIINPITMQCIKHYVGHGNAINELKFHPR-DPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADY  169 (366)
T ss_dssp             EETTCEEEEECTTTCCEEEEEESCCSCEEEEEECSS-CTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEE
T ss_pred             ecCCCEEEEEEchhceEeeeecCCCCcEEEEEECCC-CCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEE
Confidence            999999999999999999999999999999999652 5679999999999999999998888877   678889999999


Q ss_pred             ccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec-------------------------ccccCCceEEEEEcCCCCE
Q 001310          538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG-------------------------LQLQHNSVSVVHFDTAKDQ  592 (1103)
Q Consensus       538 s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-------------------------~~~~~~~v~~~~~~~~~~~  592 (1103)
                      +|++++|++++.    ++.|++||+.+++....+..                         ...+...|.+++|+  +++
T Consensus       170 ~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~  243 (366)
T 3k26_A          170 DLLGEKIMSCGM----DHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDL  243 (366)
T ss_dssp             CTTSSEEEEEET----TSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTE
T ss_pred             CCCCCEEEEecC----CCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCE
Confidence            999999999986    55699999998765443332                         00133889999998  679


Q ss_pred             EEEEeCCCcEEEEECCCCee--------------EEEEcCCCCCCCCceEEEecC--CCEEEEEECCCeEEEEEcCCCCe
Q 001310          593 ILAAGDDHVIKIWDMNKVQL--------------LTTIDAGGGLPENPRICFNKN--GTLLAVIANENRIKILETPESNS  656 (1103)
Q Consensus       593 l~~~~~dg~i~iwd~~~~~~--------------~~~~~~~~~~~~v~~v~~s~~--g~~l~~~~~dg~i~iw~~~~~~~  656 (1103)
                      +++++.||.|++||+.++..              +..+..+  ...|.+++|+|+  +++|++++.||.|++||+.+++.
T Consensus       244 l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~  321 (366)
T 3k26_A          244 ILSKSCENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYS--QCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDP  321 (366)
T ss_dssp             EEEECSSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECS--SCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSG
T ss_pred             EEEEecCCEEEEEeCCCccccccccccCCcchheecccccc--CCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCC
Confidence            99999999999999987643              5666655  346899999999  99999999999999999998753


Q ss_pred             ----eEecccc--ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          657 ----VDAAGVL--SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       657 ----~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                          ...+..|  ...|.+++|+                      |+++++++++.|+.|++||+.
T Consensus       322 ~~~~~~~~~~~~~~~~v~~~~~s----------------------~~~~~l~s~~~dg~i~iwd~~  365 (366)
T 3k26_A          322 HKAKCTTLTHHKCGAAIRQTSFS----------------------RDSSILIAVCDDASIWRWDRL  365 (366)
T ss_dssp             GGCEEEEECCTTCCSCEEEEEEC----------------------TTSSEEEEEETTSEEEEEEC-
T ss_pred             ccccceEEcccccCCceEEEEeC----------------------CCCCeEEEEeCCCEEEEEEec
Confidence                3366666  6889888887                      788999999999999999974

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=100.00  E-value=9.8e-31  Score=287.81  Aligned_cols=281  Identities=15%  Similarity=0.169  Sum_probs=247.5

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +.+|.+.|.+++| |++++|++++.||.|++||+.+++...   .+..|...|.+++|+|+++  ++++++.|+.|++|+
T Consensus        14 l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~dg~i~~~~   87 (313)
T 3odt_A           14 LKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGT---VVYTGQGFLNSVCYDSEKE--LLLFGGKDTMINGVP   87 (313)
T ss_dssp             ECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEE---EEEECSSCEEEEEEETTTT--EEEEEETTSCEEEEE
T ss_pred             hhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEE---EeecCCccEEEEEECCCCC--EEEEecCCCeEEEEE
Confidence            7899999999999 999999999999999999998875444   6778999999999999999  899999999999999


Q ss_pred             CCCC---ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEcc-CCCEEEEE
Q 001310          472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSA-NGRRLFSC  547 (1103)
Q Consensus       472 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~-dg~~l~~~  547 (1103)
                      +...   +.+..+.+|...|.+++|    ++.++++++.||.|++||  .......+..+...+.+++++| ++++++++
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  161 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF----QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTA  161 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEE
T ss_pred             eeecCCCCcccchhhcccCEEEEEe----cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEE
Confidence            8754   667888999999999998    346999999999999999  5667778888999999999998 99999999


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEec-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCc
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQG-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1103)
                      +.    ++.|++||  .++....+.. +.   ..+.+++|+|++. +++++.||.|++||+.+++.+..+..+.  ..+.
T Consensus       162 ~~----d~~i~i~d--~~~~~~~~~~~~~---~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~--~~i~  229 (313)
T 3odt_A          162 SA----DKTIKLWQ--NDKVIKTFSGIHN---DVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHE--SFVY  229 (313)
T ss_dssp             ET----TSCEEEEE--TTEEEEEECSSCS---SCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCS--SCEE
T ss_pred             EC----CCCEEEEe--cCceEEEEeccCc---ccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCC--ceEE
Confidence            86    55699999  5666777776 44   8899999999987 9999999999999999999999988664  4699


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001310          627 RICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1103)
Q Consensus       627 ~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1103)
                      +++|+|++ .+++++.||.|++||+.+++.+..+..+...+.+++++                      |+++ +++++.
T Consensus       230 ~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~----------------------~~~~-~~~~~~  285 (313)
T 3odt_A          230 CIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCM----------------------SNGD-IIVGSS  285 (313)
T ss_dssp             EEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEEC----------------------TTSC-EEEEET
T ss_pred             EEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEc----------------------cCCC-EEEEeC
Confidence            99999999 58899999999999999999999999999999999987                      5666 667899


Q ss_pred             ccccccccccccCC
Q 001310          707 ENKSEVEKPLFARP  720 (1103)
Q Consensus       707 d~~i~~w~~~~~~~  720 (1103)
                      |+.|++|++.....
T Consensus       286 dg~i~iw~~~~~~~  299 (313)
T 3odt_A          286 DNLVRIFSQEKSRW  299 (313)
T ss_dssp             TSCEEEEESCGGGC
T ss_pred             CCcEEEEeCCCCce
Confidence            99999999885443

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=100.00  E-value=1.9e-31  Score=310.04  Aligned_cols=301  Identities=13%  Similarity=0.204  Sum_probs=233.2

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC------------ccE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG------------VSV  399 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V  399 (1103)
                      .|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++.......        ...-....+.+|.            ..|
T Consensus        26 ~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~--------~~~~~~~~~~~h~~~~~~~~~~~~~~~V   96 (447)
T 3dw8_B           26 AEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSR--------GEYNVYSTFQSHEPEFDYLKSLEIEEKI   96 (447)
T ss_dssp             CGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCC--------CCEEEEEEEECCCCEEEGGGTEEECCCC
T ss_pred             cccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccc--------cceeEecccccccccccccccccccCce
Confidence            4678999999999998 799999999999999998763110000        0000011266788            889


Q ss_pred             EEEEECCCC--CEEEEEeCCCeEEEEEecCCCccc------------------------------------cc-eEeccc
Q 001310          400 NRVVWSPDG--SLLGVAYSKHIVQLYAYHGGSDAR------------------------------------QQ-LEIDAH  440 (1103)
Q Consensus       400 ~~~~~spdg--~~las~~~d~~i~iwd~~~~~~~~------------------------------------~~-~~l~~h  440 (1103)
                      .+++|+|++  .+|++++.|++|++||+.++....                                    .. ....+|
T Consensus        97 ~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  176 (447)
T 3dw8_B           97 NKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAH  176 (447)
T ss_dssp             CEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCC
T ss_pred             EEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCC
Confidence            999999998  899999999999999998743210                                    00 113689


Q ss_pred             cccEEEEEEecCCCceEEEEEcCCCceEEEeCCC-CceeE-------EeecCCCceEEEEeeecCCc-cEEEEEECCCeE
Q 001310          441 VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT-GSRTY-------SFEGHGAPVYSLCPHAKENI-HFIFSISVDGKI  511 (1103)
Q Consensus       441 ~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~-~~~~~-------~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i  511 (1103)
                      ...|.+++|+|+++  +|++| .|+.|++||+.+ ++.+.       .+.+|...|.+++|++  ++ .+|++++.||.|
T Consensus       177 ~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~i  251 (447)
T 3dw8_B          177 TYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGTI  251 (447)
T ss_dssp             SSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSCE
T ss_pred             CcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCeE
Confidence            99999999999999  78888 799999999984 44444       2568999999999965  54 799999999999


Q ss_pred             EEEEcCCCCe----eEEecCCCc------------cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-CeeEEEEecc
Q 001310          512 KAWLYDSLGA----RVDYDAPGL------------GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAIKRTYQGL  574 (1103)
Q Consensus       512 ~iwd~~~~~~----~~~~~~~~~------------~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~  574 (1103)
                      ++||+++...    ...+..+..            .|.+++|+|+|++|++++.     +.|++||+.+ ++.+..+.+|
T Consensus       252 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-----~~v~iwd~~~~~~~~~~~~~~  326 (447)
T 3dw8_B          252 RLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-----LSVKVWDLNMENRPVETYQVH  326 (447)
T ss_dssp             EEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-----SEEEEEETTCCSSCSCCEESC
T ss_pred             EEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-----CeEEEEeCCCCccccceeecc
Confidence            9999998876    667777765            8999999999999998863     5699999997 8888888887


Q ss_pred             cccCC------------ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----------------------
Q 001310          575 QLQHN------------SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------  619 (1103)
Q Consensus       575 ~~~~~------------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------  619 (1103)
                      .....            .+..++|+|++++|++|+.||.|++||+.+++.+......                       
T Consensus       327 ~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  406 (447)
T 3dw8_B          327 EYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKD  406 (447)
T ss_dssp             GGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTT
T ss_pred             ccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCcccc
Confidence            62111            1334899999999999999999999999998876422111                       


Q ss_pred             -------CCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          620 -------GGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       620 -------~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                             .....|..++|+|++++|++++.++ +.+|...
T Consensus       407 ~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~  445 (447)
T 3dw8_B          407 EISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQDK  445 (447)
T ss_dssp             CEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred             cccccccccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence                   1123578899999999999998876 7777643

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=100.00  E-value=2.4e-31  Score=298.91  Aligned_cols=294  Identities=13%  Similarity=0.159  Sum_probs=242.1

Q ss_pred             eeccCCCccEEEEEECCCCCEEE-EEeC---CCeEEEEEecCCCccccceEeccccccEEEEEEecC---CCceEEEEEc
Q 001310          390 ALVRDPGVSVNRVVWSPDGSLLG-VAYS---KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP---CKQISVITCG  462 (1103)
Q Consensus       390 ~~~~~h~~~V~~~~~spdg~~la-s~~~---d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d---~~~~~l~s~~  462 (1103)
                      .++.+|...|.+++|+|++..++ +|+.   |+.|++||+.+++....  ...+|...|.+++|+|+   +.  +|++++
T Consensus        12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~   87 (357)
T 3i2n_A           12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD   87 (357)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred             hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence            34678999999999999996655 5555   89999999998864332  23379999999999999   57  799999


Q ss_pred             CCCceEEEeCCCCc-eeEEeecCCCceEEEEeee----cCCccEEEEEECCCeEEEEEcCCCC-eeEEecCCCc----cE
Q 001310          463 DDKTIKVWDAVTGS-RTYSFEGHGAPVYSLCPHA----KENIHFIFSISVDGKIKAWLYDSLG-ARVDYDAPGL----GC  532 (1103)
Q Consensus       463 ~d~~i~iwd~~~~~-~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~~~~----~i  532 (1103)
                      .|+.|++||+.+++ .+..+.+|...|.++++.+    ++++.+|++++.||.|++||+.+.. ....+..+..    .+
T Consensus        88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v  167 (357)
T 3i2n_A           88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC  167 (357)
T ss_dssp             TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred             CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence            99999999999998 8899999999999997743    5678899999999999999999887 5666655443    78


Q ss_pred             EEEE----EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC---CCCEEEEEeCCCcEEEE
Q 001310          533 TRMA----YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT---AKDQILAAGDDHVIKIW  605 (1103)
Q Consensus       533 ~~~~----~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iw  605 (1103)
                      .+++    |+|+++++++++.    ++.|++||+.+++.... ..+.   ..+.+++|+|   +++++++++.||.|++|
T Consensus       168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~---~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~  239 (357)
T 3i2n_A          168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIK---NGVCSLEFDRKDISMNKLVATSLEGKFHVF  239 (357)
T ss_dssp             EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECS---SCEEEEEESCSSSSCCEEEEEESTTEEEEE
T ss_pred             EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCC---CceEEEEcCCCCCCCCEEEEECCCCeEEEE
Confidence            8888    7899999999976    56799999999987544 4444   7899999999   99999999999999999


Q ss_pred             ECCCCeeEEEEc---CCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC-------------------CeeEeccc
Q 001310          606 DMNKVQLLTTID---AGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES-------------------NSVDAAGV  662 (1103)
Q Consensus       606 d~~~~~~~~~~~---~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iw~~~~~-------------------~~~~~~~~  662 (1103)
                      |+.+++....+.   ...+...|.+++|+|+++ ++++++.||.|++|++..+                   +.+..+..
T Consensus       240 d~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  319 (357)
T 3i2n_A          240 DMRTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTL  319 (357)
T ss_dssp             EEEEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEEC
T ss_pred             eCcCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeecccc
Confidence            998876554443   112345799999999998 8999999999999999754                   24566777


Q ss_pred             cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccce-eeccccccccccccc
Q 001310          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEI-SVEAENKSEVEKPLF  717 (1103)
Q Consensus       663 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-s~~~d~~i~~w~~~~  717 (1103)
                      |...|.+++|+                      |++++++ +++.|+.|++|++..
T Consensus       320 ~~~~v~~~~~s----------------------~~~~~l~~s~~~d~~i~iw~~~~  353 (357)
T 3i2n_A          320 STQPISSLDWS----------------------PDKRGLCVCSSFDQTVRVLIVTK  353 (357)
T ss_dssp             CSSCEEEEEEC----------------------SSSTTEEEEEETTSEEEEEEECC
T ss_pred             CCCCeeEEEEc----------------------CCCCeEEEEecCCCcEEEEECCC
Confidence            88888888886                      7888888 899999999999863

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=100.00  E-value=4.6e-32  Score=297.75  Aligned_cols=253  Identities=15%  Similarity=0.205  Sum_probs=205.0

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-  406 (1103)
                      .++.+|++.|++++|+|+|+ +||+|+.|++|+|||+.++.....                 ..+.+|.+.|.+++|+| 
T Consensus         7 ~~~~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~~-----------------~~l~gH~~~V~~v~~~~~   68 (316)
T 3bg1_A            7 TVDTSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQILI-----------------ADLRGHEGPVWQVAWAHP   68 (316)
T ss_dssp             -------CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEEE-----------------EEEECCSSCEEEEEECCG
T ss_pred             eecccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEEE-----------------EEEcCCCccEEEEEeCCC
Confidence            45679999999999999998 699999999999999988753211                 12678999999999987 


Q ss_pred             -CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCce---eEE
Q 001310          407 -DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR---TYS  480 (1103)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~---~~~  480 (1103)
                       ++++||+|+.|++|++||+.+++. .....+.+|...|.+++|+|+  +.  +|++|+.|++|++||+.++..   ...
T Consensus        69 ~~~~~l~s~s~D~~v~iWd~~~~~~-~~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~  145 (316)
T 3bg1_A           69 MYGNILASCSYDRKVIIWREENGTW-EKSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKI  145 (316)
T ss_dssp             GGSSCEEEEETTSCEEEECCSSSCC-CEEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCB
T ss_pred             CCCCEEEEEECCCEEEEEECCCCcc-eEEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeee
Confidence             489999999999999999988642 223367899999999999998  66  799999999999999987642   355


Q ss_pred             eecCCCceEEEEeeecC---------------CccEEEEEECCCeEEEEEcCCCC---eeEEecCCCccEEEEEEccCC-
Q 001310          481 FEGHGAPVYSLCPHAKE---------------NIHFIFSISVDGKIKAWLYDSLG---ARVDYDAPGLGCTRMAYSANG-  541 (1103)
Q Consensus       481 ~~~~~~~v~~~~~~~~~---------------~~~~l~s~~~dg~i~iwd~~~~~---~~~~~~~~~~~i~~~~~s~dg-  541 (1103)
                      +.+|...|.+++|++..               ++.+|++++.|++|++||++...   ....+..|...|.+++|+|++ 
T Consensus       146 ~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~  225 (316)
T 3bg1_A          146 NNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIG  225 (316)
T ss_dssp             TTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSS
T ss_pred             eccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCC
Confidence            67899999999997652               14689999999999999997552   445677888999999999987 


Q ss_pred             ---CEEEEEecCCCCceeEEEEeCCCC---e-eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001310          542 ---RRLFSCGTSKEGESFLVEWNESEG---A-IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN  608 (1103)
Q Consensus       542 ---~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~  608 (1103)
                         ++|++++.    ++.|++|++.+.   . ....+..|.   ..|.+++|+|++++|++++.|++|++|+..
T Consensus       226 ~~~~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~---~~v~~v~~sp~g~~las~~~D~~v~lw~~~  292 (316)
T 3bg1_A          226 LPTSTIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFN---DVVWHVSWSITANILAVSGGDNKVTLWKES  292 (316)
T ss_dssp             CSCCEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECS---SCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred             CCCceEEEEcC----CCeEEEEEccCccccchhhhhhhcCC---CcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence               78999886    677999998763   1 123344555   889999999999999999999999999976

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=100.00  E-value=1.2e-30  Score=299.65  Aligned_cols=282  Identities=19%  Similarity=0.252  Sum_probs=242.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  477 (1103)
                      ..+.|+||++ ..||+|. |++|+|||..+|+.... ..+.+|...|++++|+|||+  +|++|+.||+|++||+.++++
T Consensus       107 y~~~l~wS~~-n~lAvgl-d~tV~lWd~~tg~~~~~-~~~~~~~~~V~sv~fspdg~--~lasgs~Dg~v~iWd~~~~~~  181 (420)
T 4gga_A          107 YLNLVDWSSG-NVLAVAL-DNSVYLWSASSGDILQL-LQMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKR  181 (420)
T ss_dssp             TCBCEEECTT-SEEEEEE-TTEEEEEETTTCCEEEE-EECCSTTCCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEE
T ss_pred             cceeEEECCC-CEEEEEe-CCEEEEEECCCCCEEEE-EEecCCCCcEEEEEECCCCC--EEEEEECCCeEEEEEcCCCcE
Confidence            3567999986 4787775 89999999999976542 24567888999999999999  899999999999999999999


Q ss_pred             eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1103)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1103)
                      +..+.+|...+.++++    ++.++++|+.|+.+++||...... ...+..+...+..+.++|+++++++++.    ++.
T Consensus       182 ~~~~~~h~~~v~~~s~----~~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~~~g~~l~s~~~----D~~  253 (420)
T 4gga_A          182 LRNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNL  253 (420)
T ss_dssp             EEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSC
T ss_pred             EEEEeCCCCceEEEee----CCCEEEEEeCCCceeEeeecccceeeEEecccccceeeeeecCCCCeeeeeec----ccc
Confidence            9999999999999877    346999999999999999887554 4577889999999999999999999986    566


Q ss_pred             EEEEeCCCCee----EEEEecccccCCceEEEEEcCCCCEE-EE--EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          557 LVEWNESEGAI----KRTYQGLQLQHNSVSVVHFDTAKDQI-LA--AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       557 i~iwd~~~~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l-~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                      +++|+..+++.    +.....+.   ..|.+++|+|.+..+ ++  |+.|++|++||+.+++....+..+.   .+.++.
T Consensus       254 v~i~~~~~~~~~~~~~~~~~~~~---~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~---~v~~~~  327 (420)
T 4gga_A          254 VNVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHS---QVCSIL  327 (420)
T ss_dssp             EEEEESSCCSSCSCCSEEECCCS---SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSS---CEEEEE
T ss_pred             ceEEeeccccccceeeeeecccC---CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeecccc---ceeeee
Confidence            99999987753    34455555   899999999986554 44  3579999999999999999887663   478999


Q ss_pred             EecCCCEEEEEE--CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          630 FNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       630 ~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      |+|+++.+++++  .|+.|++||+.+++.+..+.+|...|.+++|+                      |||+++++++.|
T Consensus       328 ~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D  385 (420)
T 4gga_A          328 WSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAAD  385 (420)
T ss_dssp             EETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             ecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecC
Confidence            999999998876  68999999999999999999999999999997                      789999999999


Q ss_pred             cccccccccccCC
Q 001310          708 NKSEVEKPLFARP  720 (1103)
Q Consensus       708 ~~i~~w~~~~~~~  720 (1103)
                      ++|++|++....+
T Consensus       386 ~tvriWdv~~~~~  398 (420)
T 4gga_A          386 ETLRLWRCFELDP  398 (420)
T ss_dssp             TEEEEECCSCSSC
T ss_pred             CeEEEEECCCCCc
Confidence            9999999865433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=100.00  E-value=9.4e-31  Score=302.15  Aligned_cols=280  Identities=21%  Similarity=0.308  Sum_probs=241.8

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      ....+|...|.|++|  |++ ++++|+.||.|++||+.+++.+..                   +.+|.+.|.+++|  +
T Consensus       127 ~~~~~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~~-------------------~~~h~~~v~~l~~--~  182 (435)
T 1p22_A          127 HCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--D  182 (435)
T ss_dssp             ECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--C
T ss_pred             ecccCCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEEE-------------------EcCCCCcEEEEEE--C
Confidence            344567778999888  777 689999999999999999987765                   7789999999999  8


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee---EEeecC
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT---YSFEGH  484 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~---~~~~~~  484 (1103)
                      +++|++|+.||+|++||+.+++.+.   .+.+|...|.+++|++  .  .+++|+.||.|++||+.++..+   ..+.+|
T Consensus       183 ~~~l~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~  255 (435)
T 1p22_A          183 ERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGH  255 (435)
T ss_dssp             SSEEEEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCC
T ss_pred             CCEEEEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCC
Confidence            8999999999999999999987655   6789999999999974  4  7999999999999999988766   677899


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1103)
                      ...|.++++    ++.++++++.||.|++||+.+++....+..+...+.++++  +++++++++.    ++.|++||+.+
T Consensus       256 ~~~v~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~  325 (435)
T 1p22_A          256 RAAVNVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIEC  325 (435)
T ss_dssp             SSCEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTT
T ss_pred             CCcEEEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCC
Confidence            999999988    4579999999999999999999999999999999999988  5789999876    56699999999


Q ss_pred             CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe---------eEEEEcCCCCCCCCceEEEecCCC
Q 001310          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ---------LLTTIDAGGGLPENPRICFNKNGT  635 (1103)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~g~  635 (1103)
                      ++.+..+.+|.   ..|.+++|  ++.++++|+.||.|++||+.++.         .+..+..|  ...|.+++|  +++
T Consensus       326 ~~~~~~~~~h~---~~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~  396 (435)
T 1p22_A          326 GACLRVLEGHE---ELVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEF  396 (435)
T ss_dssp             CCEEEEECCCS---SCEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSS
T ss_pred             CCEEEEEeCCc---CcEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCC
Confidence            99999999887   89999998  67899999999999999997766         77777766  446899999  688


Q ss_pred             EEEEEECCCeEEEEEcCCCCee
Q 001310          636 LLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                      +|++++.||.|++||+.+....
T Consensus       397 ~l~s~s~Dg~i~iwd~~~~~~~  418 (435)
T 1p22_A          397 QIVSSSHDDTILIWDFLNDPAA  418 (435)
T ss_dssp             CEEECCSSSEEEEEC-------
T ss_pred             EEEEEeCCCEEEEEECCCCCCc
Confidence            9999999999999999876543

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=100.00  E-value=4.3e-31  Score=294.88  Aligned_cols=287  Identities=9%  Similarity=0.053  Sum_probs=242.1

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      ....+|.+.|++++|+|+++ +|++|+.|+.|+|||+.+++.....                ..+.+|...|.+++|+|+
T Consensus         5 ~~~~~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~~~----------------~~~~~~~~~v~~~~~~~~   67 (342)
T 1yfq_A            5 QIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDL----------------LQSLRYKHPLLCCNFIDN   67 (342)
T ss_dssp             ECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEE----------------EEEEECSSCEEEEEEEES
T ss_pred             ecccCCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccccc----------------eeeeecCCceEEEEECCC
Confidence            44568999999999999998 6899999999999999887721110                013469999999999999


Q ss_pred             CC-EEEEEeCCCeEEEEEe-cCCCccccceEecc--ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC---------
Q 001310          408 GS-LLGVAYSKHIVQLYAY-HGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---------  474 (1103)
Q Consensus       408 g~-~las~~~d~~i~iwd~-~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---------  474 (1103)
                      ++ +|++|+.||.|++||+ .+++.    ..+.+  |...|.+++|+| +.  .+++++.|+.|++||+.+         
T Consensus        68 ~~~~l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~  140 (342)
T 1yfq_A           68 TDLQIYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVK  140 (342)
T ss_dssp             SSEEEEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEE
T ss_pred             CCcEEEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEccccccccccccc
Confidence            99 9999999999999999 87653    35778  999999999999 77  899999999999999988         


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCe--eEEecCCCccEEEEEEcc-CCCEEEEEecC
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSA-NGRRLFSCGTS  550 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~  550 (1103)
                      ++++..+. |...|.+++|++  ++  +++++.|+.|++||+.. ...  ......+...+.+++|+| +++++++++. 
T Consensus       141 ~~~~~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~-  214 (342)
T 1yfq_A          141 NLNSNNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI-  214 (342)
T ss_dssp             ESCSSSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET-
T ss_pred             CCeeeEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec-
Confidence            77777776 899999999964  33  99999999999999988 443  335556777899999999 9999999986 


Q ss_pred             CCCceeEEEEeCCCC------eeEEEEecccc------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310          551 KEGESFLVEWNESEG------AIKRTYQGLQL------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~------~~~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                         ++.|++|++...      +....+..|..      +...|.+++|+|++++|++++.||.|++||+.+++.+..+..
T Consensus       215 ---dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~  291 (342)
T 1yfq_A          215 ---DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAK  291 (342)
T ss_dssp             ---TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             ---CCcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhc
Confidence               667999999887      77788887751      124899999999999999999999999999999999988876


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECCCe-EEEEE
Q 001310          619 GGGLPENPRICFNKNGTLLAVIANENR-IKILE  650 (1103)
Q Consensus       619 ~~~~~~v~~v~~s~~g~~l~~~~~dg~-i~iw~  650 (1103)
                      +. ...|.+++  |++++|++++.||. .+.+.
T Consensus       292 ~h-~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~  321 (342)
T 1yfq_A          292 FN-EDSVVKIA--CSDNILCLATSDDTFKTNAA  321 (342)
T ss_dssp             CS-SSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred             cc-CCCceEec--CCCCeEEEEecCCccccccc
Confidence            51 24578888  99999999999998 44444

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=100.00  E-value=8.5e-31  Score=295.78  Aligned_cols=294  Identities=17%  Similarity=0.203  Sum_probs=242.1

Q ss_pred             CccceeEecccCCcCceEEEecCC---CceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCCCc
Q 001310          322 FPKTVAQTLIEGSSSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDPGV  397 (1103)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spd---g~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  397 (1103)
                      .|...++.+.+|.+.|++++|+|+   |+ +|++|+.||.|+|||+.+ +..+..                  .+.+|..
T Consensus        27 ~~~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~~------------------~~~~h~~   87 (368)
T 3mmy_A           27 NPMKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIPK------------------AQQMHTG   87 (368)
T ss_dssp             CTTCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEEE------------------EEEECSS
T ss_pred             CCcceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeEE------------------EeccccC
Confidence            456778899999999999999999   56 799999999999999998 444311                  1567999


Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEE--ecCCCceEEEEEcCCCceEEEeCCCC
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF--SAPCKQISVITCGDDKTIKVWDAVTG  475 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~--s~d~~~~~l~s~~~d~~i~iwd~~~~  475 (1103)
                      .|.+++|+|++++|++++.||.|++||+.+++...    +.+|...|.+++|  +|++.  ++++++.|+.|++||+.++
T Consensus        88 ~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~  161 (368)
T 3mmy_A           88 PVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSS  161 (368)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCS
T ss_pred             CEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCC
Confidence            99999999999999999999999999999876443    5679999999999  88888  8999999999999999999


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec--CCCccEEEEEEccCCCE----EEEEec
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRR----LFSCGT  549 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~----l~~~~~  549 (1103)
                      +.+..+..+. .+.++.+.    ...+++++.++.+++|+++.........  .......++++.++...    +++++.
T Consensus       162 ~~~~~~~~~~-~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (368)
T 3mmy_A          162 NPMMVLQLPE-RCYCADVI----YPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI  236 (368)
T ss_dssp             SCSEEEECSS-CEEEEEEE----TTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET
T ss_pred             cEEEEEecCC-CceEEEec----CCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC
Confidence            9999998765 55555553    2478999999999999998876554332  23445667777666554    888775


Q ss_pred             CCCCceeEEEEeCCCC---eeEEEEeccccc---------CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310          550 SKEGESFLVEWNESEG---AIKRTYQGLQLQ---------HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~---~~~~~~~~~~~~---------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  617 (1103)
                          ++.|++||+...   ..+..+.+|...         ...|.+++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus       237 ----dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  312 (368)
T 3mmy_A          237 ----EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE  312 (368)
T ss_dssp             ----TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             ----CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence                667999999987   556677776610         1169999999999999999999999999999999999888


Q ss_pred             CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310          618 AGGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       618 ~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      .+  ...|.+++|+|+|++|++++.|+..+.|+.
T Consensus       313 ~~--~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~  344 (368)
T 3mmy_A          313 QL--DQPISACCFNHNGNIFAYASSYDWSKGHEF  344 (368)
T ss_dssp             CC--SSCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred             CC--CCCceEEEECCCCCeEEEEecccccccccc
Confidence            65  456999999999999999999875555443

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.98  E-value=2.8e-32  Score=309.07  Aligned_cols=241  Identities=13%  Similarity=0.107  Sum_probs=198.6

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCC--CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~--~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      .|.++|.+++|+|||++||+|+.|+.|++||+.++  +.+.   .+.+|...|.+++|+|+++  +|++++.|++|++||
T Consensus         9 ~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~vwd   83 (377)
T 3dwl_C            9 ILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYVYE   83 (377)
T ss_dssp             ECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEEC-
T ss_pred             cCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEEEE
Confidence            36789999999999999999999999999999987  4443   5779999999999999998  799999999999999


Q ss_pred             CCCCc---eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecC-CCccEEEEEEccCCCEE
Q 001310          472 AVTGS---RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDA-PGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       472 ~~~~~---~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~-~~~~i~~~~~s~dg~~l  544 (1103)
                      +.+++   ....+.+|...|.+++|++  ++.+|++++.|+.|++||++..+.   ...+.. +...|.+++|+|++++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l  161 (377)
T 3dwl_C           84 KRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLL  161 (377)
T ss_dssp             -----CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSEE
T ss_pred             cCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCEE
Confidence            99987   6778889999999999965  678999999999999999998773   556666 88999999999999999


Q ss_pred             EEEecCCCCceeEEEEeCC------------------CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001310          545 FSCGTSKEGESFLVEWNES------------------EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  606 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  606 (1103)
                      ++++.    ++.|++||+.                  .++.+..+ +|.   ..|.+++|+|++++|++++.||.|++||
T Consensus       162 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~v~~~~~sp~~~~l~~~~~d~~i~iwd  233 (377)
T 3dwl_C          162 AAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSG---GWVHAVGFSPSGNALAYAGHDSSVTIAY  233 (377)
T ss_dssp             EEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCS---SSEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred             EEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCC---ceEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence            99986    5669999985                  34455555 555   8999999999999999999999999999


Q ss_pred             CCCCee----EEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          607 MNKVQL----LTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       607 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      +.+++.    +..+..+  ...|.+++|+|++++|++++.++.+ +|+..
T Consensus       234 ~~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~  280 (377)
T 3dwl_C          234 PSAPEQPPRALITVKLS--QLPLRSLLWANESAIVAAGYNYSPI-LLQGN  280 (377)
T ss_dssp             ECSTTSCEEECCCEECS--SSCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred             CCCCCCcceeeEeecCC--CCceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence            999887    5666655  3468999999999999999877766 66654

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.98  E-value=1.4e-30  Score=297.38  Aligned_cols=297  Identities=13%  Similarity=0.174  Sum_probs=242.2

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-CCCEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-DGSLLGV  413 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-dg~~las  413 (1103)
                      ....+++++|+...++++|+.||.|+|||+........               ....+.+|.+.|.+++|+| ++++||+
T Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s   99 (402)
T 2aq5_A           35 WDSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIAS   99 (402)
T ss_dssp             CSSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEE
T ss_pred             cCCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEE
Confidence            35667999999876677789999999999966432210               1112678999999999999 9999999


Q ss_pred             EeCCCeEEEEEecCCCcc----ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe--ecCCCc
Q 001310          414 AYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF--EGHGAP  487 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~--~~~~~~  487 (1103)
                      |+.||+|+|||+.++...    .....+.+|...|.+++|+|++.. +|++++.|+.|++||+.+++.+..+  .+|...
T Consensus       100 ~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~  178 (402)
T 2aq5_A          100 GSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDT  178 (402)
T ss_dssp             EETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSC
T ss_pred             EeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCc
Confidence            999999999999987432    234478899999999999999843 7999999999999999999999999  889999


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-cCCCcc-EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLG-CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      |.+++|++  ++.+|++++.||.|++||+++++....+ ..+... +.+++|+|++++++++.. +..++.|++||+.++
T Consensus       179 v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~  255 (402)
T 2aq5_A          179 IYSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHL  255 (402)
T ss_dssp             EEEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBC
T ss_pred             eEEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCccc
Confidence            99999965  7789999999999999999998888877 566654 899999999999988732 123788999999987


Q ss_pred             ee-EEEEe-cccccCCceEEEEEcCCCCEEEE-EeCCCcEEEEECCCCee-EEEEcCCCCCCCCceEEEecCCCEEEEEE
Q 001310          566 AI-KRTYQ-GLQLQHNSVSVVHFDTAKDQILA-AGDDHVIKIWDMNKVQL-LTTIDAGGGLPENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       566 ~~-~~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~  641 (1103)
                      +. +.... .+.   ..+.+++|+|+++++++ ++.||.|++||+.+++. +..+..+.+...+.+++|+|++.++++  
T Consensus       256 ~~~~~~~~~~~~---~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--  330 (402)
T 2aq5_A          256 EEPLSLQELDTS---SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--  330 (402)
T ss_dssp             SSCSEEEECCCC---SSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--
T ss_pred             cCCceEEeccCC---CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--
Confidence            64 33333 233   67999999999999975 55799999999998874 545544434467999999999988774  


Q ss_pred             CCCeEEEEEcCCCC
Q 001310          642 NENRIKILETPESN  655 (1103)
Q Consensus       642 ~dg~i~iw~~~~~~  655 (1103)
                      .++.+++|++.++.
T Consensus       331 ~~~~~~~~~l~~~~  344 (402)
T 2aq5_A          331 KCEIARFYKLHERK  344 (402)
T ss_dssp             GTEEEEEEEEETTE
T ss_pred             cceeEEEEEcCCCc
Confidence            56799999998764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.98  E-value=2.8e-31  Score=291.43  Aligned_cols=251  Identities=18%  Similarity=0.320  Sum_probs=204.8

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~  468 (1103)
                      ++.+|.+.|.+++|+|+|++||+|+.|++|+|||+.++... ....+.+|...|.+++|+++  ++  +|++|+.|++|+
T Consensus         8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~   84 (316)
T 3bg1_A            8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI   84 (316)
T ss_dssp             ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred             ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence            36789999999999999999999999999999999886421 23368899999999999863  67  799999999999


Q ss_pred             EEeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe---eEEecCCCccEEEEEEccC---
Q 001310          469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA---RVDYDAPGLGCTRMAYSAN---  540 (1103)
Q Consensus       469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~~~~~i~~~~~s~d---  540 (1103)
                      +||+.+++  .+..+.+|...|.+++|+|..++.+|++++.||+|++||+.....   ...+..|...+.+++|+|+   
T Consensus        85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  164 (316)
T 3bg1_A           85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP  164 (316)
T ss_dssp             EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred             EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence            99999874  567788999999999998876688999999999999999987643   2344567778999999997   


Q ss_pred             --------------CCEEEEEecCCCCceeEEEEeCCCC---eeEEEEecccccCCceEEEEEcCCC----CEEEEEeCC
Q 001310          541 --------------GRRLFSCGTSKEGESFLVEWNESEG---AIKRTYQGLQLQHNSVSVVHFDTAK----DQILAAGDD  599 (1103)
Q Consensus       541 --------------g~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~d  599 (1103)
                                    +++|++++.    ++.|++||+..+   +.+..+.+|.   ..|.+++|+|++    .+|++++.|
T Consensus       165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~---~~V~~v~~sp~~~~~~~~las~s~D  237 (316)
T 3bg1_A          165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHS---DWVRDVAWAPSIGLPTSTIASCSQD  237 (316)
T ss_dssp             ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCS---SCEEEEECCCCSSCSCCEEEEEETT
T ss_pred             ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCC---CceEEEEecCCCCCCCceEEEEcCC
Confidence                          467888765    667999999765   4566677776   899999999986    789999999


Q ss_pred             CcEEEEECCCC---e-eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          600 HVIKIWDMNKV---Q-LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       600 g~i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      ++|++|++.+.   . ....+..+  ...|.+++|+|++++|++++.|+.|++|+...
T Consensus       238 ~~v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~  293 (316)
T 3bg1_A          238 GRVFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKESV  293 (316)
T ss_dssp             CEEEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred             CeEEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence            99999998762   1 11223323  34689999999999999999999999999763

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.98  E-value=1.7e-30  Score=290.85  Aligned_cols=306  Identities=10%  Similarity=0.100  Sum_probs=227.1

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-  406 (1103)
                      +.+.+|++.|++++|+|+|+ +||+|+.||.|+|||+.++......               ...+.+|...|.+++|+| 
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~---------------~~~~~~~~~~v~~~~~~~~   68 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWEL---------------SDSWRAHDSSIVAIDWASP   68 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEEE---------------EEEEECCSSCEEEEEECCG
T ss_pred             ccCcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCccee---------------cceeccCCCcEEEEEEcCC
Confidence            56789999999999999998 6899999999999999877533211               112668999999999999 


Q ss_pred             -CCCEEEEEeCCCeEEEEEecCCCcc------ccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCce
Q 001310          407 -DGSLLGVAYSKHIVQLYAYHGGSDA------RQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGSR  477 (1103)
Q Consensus       407 -dg~~las~~~d~~i~iwd~~~~~~~------~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~~  477 (1103)
                       |+++|++|+.||.|++||+.+++..      .....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.+++.
T Consensus        69 ~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~  146 (351)
T 3f3f_A           69 EYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSD  146 (351)
T ss_dssp             GGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTC
T ss_pred             CCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHH
Confidence             6999999999999999999887421      234467899999999999999  88  899999999999999998876


Q ss_pred             eEEee-------------cCCCceEEEEeeec-CCccEEEEEECCCeEEEEEcCCCCe--eEEecCCCccEEEEEEccCC
Q 001310          478 TYSFE-------------GHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANG  541 (1103)
Q Consensus       478 ~~~~~-------------~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~dg  541 (1103)
                      +..+.             .|...+.+++|++. .++.++++++.|+.+.+|+......  ...+..|...|.+++|+|++
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~  226 (351)
T 3f3f_A          147 LRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSI  226 (351)
T ss_dssp             TTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCS
T ss_pred             hccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCC
Confidence            65443             67888999999764 1367999999999998888777665  45677788899999999998


Q ss_pred             ----CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE----eCCCcEEEEECCCCeeE
Q 001310          542 ----RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA----GDDHVIKIWDMNKVQLL  613 (1103)
Q Consensus       542 ----~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~----~~dg~i~iwd~~~~~~~  613 (1103)
                          ++|++++.    ++.|++||+.++..........   .........+....+..+    .....+.+|+....+.+
T Consensus       227 ~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (351)
T 3f3f_A          227 GRWYQLIATGCK----DGRIRIFKITEKLSPLASEESL---TNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELL  299 (351)
T ss_dssp             SCSSEEEEEEET----TSCEEEEEEEECC------------------------------------------CCSEEEEEE
T ss_pred             CCcceEEEEEcC----CCeEEEEeCCCCcCccccCCcc---cceeccCCCcccccccccccccccceeeeecccccccEE
Confidence                78998876    5669999998775544433322   233333334433333332    34455667777777778


Q ss_pred             EEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEec
Q 001310          614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAA  660 (1103)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1103)
                      ..+..|  ...|.+++|+|++++|++++.||.|++|++.+++.+..+
T Consensus       300 ~~~~~h--~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~~~  344 (351)
T 3f3f_A          300 SEHDDH--NGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCM  344 (351)
T ss_dssp             EEECTT--SSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEEEE
T ss_pred             EEEecc--cccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchhhe
Confidence            888766  446999999999999999999999999999988665544

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.97  E-value=6.1e-30  Score=291.82  Aligned_cols=286  Identities=15%  Similarity=0.155  Sum_probs=242.2

Q ss_pred             ccCCCcc--EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEE
Q 001310          392 VRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKV  469 (1103)
Q Consensus       392 ~~~h~~~--V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~i  469 (1103)
                      ..+|...  +.+++|++  ..+++++.|+.|++||+.+++.....  ...|...|.+++|+|+++  +|++|+.||.|++
T Consensus        87 ~~~~~~~~~~~~~~~s~--~~l~~~~~d~~v~lw~~~~~~~~~~~--~~~~~~~v~~v~~s~~~~--~l~~~~~dg~i~i  160 (401)
T 4aez_A           87 APGIIDDYYLNLLDWSN--LNVVAVALERNVYVWNADSGSVSALA--ETDESTYVASVKWSHDGS--FLSVGLGNGLVDI  160 (401)
T ss_dssp             CTTCCCCTTCBCEEECT--TSEEEEEETTEEEEEETTTCCEEEEE--ECCTTCCEEEEEECTTSS--EEEEEETTSCEEE
T ss_pred             CCCCcCCceEEEEeecC--CCEEEEECCCeEEEeeCCCCcEeEee--ecCCCCCEEEEEECCCCC--EEEEECCCCeEEE
Confidence            3355554  45566664  56888889999999999998755421  224889999999999999  8999999999999


Q ss_pred             EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      ||+.+++.+..+.+|...|.+++|    ++.++++++.||.|++||++. ......+..+...|.+++|+|++++|++++
T Consensus       161 wd~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~  236 (401)
T 4aez_A          161 YDVESQTKLRTMAGHQARVGCLSW----NRHVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWRSDGLQLASGG  236 (401)
T ss_dssp             EETTTCCEEEEECCCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEE
T ss_pred             EECcCCeEEEEecCCCCceEEEEE----CCCEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence            999999999999999999999998    346999999999999999994 555668888999999999999999999998


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE-Ee--CCCcEEEEECCCCeeEEEEcCCCCCCCC
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AG--DDHVIKIWDMNKVQLLTTIDAGGGLPEN  625 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1103)
                      .    ++.|++||+.+++.+..+..|.   ..|.+++|+|++..+++ ++  .|+.|++||+.+++.+..+..+   ..+
T Consensus       237 ~----d~~v~iwd~~~~~~~~~~~~~~---~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~~~~---~~v  306 (401)
T 4aez_A          237 N----DNVVQIWDARSSIPKFTKTNHN---AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTVDAG---SQV  306 (401)
T ss_dssp             T----TSCEEEEETTCSSEEEEECCCS---SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEEECS---SCE
T ss_pred             C----CCeEEEccCCCCCccEEecCCc---ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEEeCC---CcE
Confidence            6    5569999999999999888877   89999999998755554 44  6999999999999999888654   458


Q ss_pred             ceEEEecCCCEEEEEE--CCCeEEEEEcCCCCeeE--eccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310          626 PRICFNKNGTLLAVIA--NENRIKILETPESNSVD--AAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1103)
Q Consensus       626 ~~v~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~--~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1103)
                      .+++|+|+++++++++  .||.|++|++.++....  .+.+|...+.+++++                      |++.++
T Consensus       307 ~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s----------------------~dg~~l  364 (401)
T 4aez_A          307 TSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALS----------------------PDGRIL  364 (401)
T ss_dssp             EEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEEC----------------------TTSSEE
T ss_pred             EEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEEC----------------------CCCCEE
Confidence            9999999999999954  89999999999865444  466888889888886                      788999


Q ss_pred             eeeccccccccccccccC
Q 001310          702 ISVEAENKSEVEKPLFAR  719 (1103)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~  719 (1103)
                      ++++.|+.|++|++..++
T Consensus       365 ~s~~~dg~i~iw~~~~~~  382 (401)
T 4aez_A          365 STAASDENLKFWRVYDGD  382 (401)
T ss_dssp             EEECTTSEEEEEECCC--
T ss_pred             EEEeCCCcEEEEECCCCc
Confidence            999999999999987543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.97  E-value=5.4e-30  Score=297.80  Aligned_cols=254  Identities=14%  Similarity=0.226  Sum_probs=208.5

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCc--------cccceEecccc------------ccEEEEEEecCC
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD--------ARQQLEIDAHV------------GNVNDLAFSAPC  453 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~--------~~~~~~l~~h~------------~~v~~~~~s~d~  453 (1103)
                      .|.+.|++++|+|+|++||+|+.||.|+|||+.+++.        ......+.+|.            ..|.+++|+|++
T Consensus        26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~  105 (447)
T 3dw8_B           26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK  105 (447)
T ss_dssp             CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred             cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence            3678999999999999999999999999999998752        11244678998            889999999998


Q ss_pred             --CceEEEEEcCCCceEEEeCCCCcee---------------------------------------EE-eecCCCceEEE
Q 001310          454 --KQISVITCGDDKTIKVWDAVTGSRT---------------------------------------YS-FEGHGAPVYSL  491 (1103)
Q Consensus       454 --~~~~l~s~~~d~~i~iwd~~~~~~~---------------------------------------~~-~~~~~~~v~~~  491 (1103)
                        .  .+++++.|++|++||+.++...                                       .. ..+|...|.++
T Consensus       106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  183 (447)
T 3dw8_B          106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI  183 (447)
T ss_dssp             SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred             Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence              5  7999999999999998775432                                       12 36799999999


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEE--------ecCCCccEEEEEEccCC-CEEEEEecCCCCceeEEEEeC
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVD--------YDAPGLGCTRMAYSANG-RRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~~~~~i~~~~~s~dg-~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      +|++  ++.+|+++ .||.|++||+........        +..+...|.+++|+|++ ++|++++.    ++.|++||+
T Consensus       184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~  256 (447)
T 3dw8_B          184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM  256 (447)
T ss_dssp             EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred             EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence            9966  67899998 899999999985443332        45778899999999999 99999986    566999999


Q ss_pred             CCCee----EEEEecccc---------cCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCCCC----
Q 001310          563 SEGAI----KRTYQGLQL---------QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPE----  624 (1103)
Q Consensus       563 ~~~~~----~~~~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~----  624 (1103)
                      .+++.    +..+..+..         +...|.+++|+|++++|++++. +.|++||+.. ++.+..+..+.....    
T Consensus       257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~  335 (447)
T 3dw8_B          257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS  335 (447)
T ss_dssp             TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred             cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence            99887    677877660         0128999999999999999999 9999999997 888888876643211    


Q ss_pred             ---------CceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310          625 ---------NPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       625 ---------v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                               +..++|+|++++|++++.||.|++||+.+++.+
T Consensus       336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~  377 (447)
T 3dw8_B          336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI  377 (447)
T ss_dssp             HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred             cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence                     234999999999999999999999999988765

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.97  E-value=1.6e-29  Score=278.77  Aligned_cols=278  Identities=19%  Similarity=0.248  Sum_probs=237.1

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee
Q 001310          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT  478 (1103)
Q Consensus       399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~  478 (1103)
                      .++|+||+++ +||+| .|++|+|||+.+++.++.. .+.+|...|++++|+|+++  ++++|+.|++|++||+.+++++
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~-~~~~~~~~V~~v~~~~~~~--~l~sgs~Dg~v~iw~~~~~~~~  102 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLL-QMEQPGEYISSVAWIKEGN--YLAVGTSSAEVQLWDVQQQKRL  102 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEE-ECCSTTCCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEE-EecCCCCeEEEEEECCCCC--EEEEEECCCcEEEeecCCceeE
Confidence            4679999986 77776 5899999999999866532 4567888999999999999  8999999999999999999999


Q ss_pred             EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCe-eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          479 YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       479 ~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                      ..+.+|...+.++.+    ++..+++++.++.+++|+...... ...+..+...+..+.++++++++++++.    ++.|
T Consensus       103 ~~~~~h~~~~~~~~~----~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~----d~~i  174 (318)
T 4ggc_A          103 RNMTSHSARVGSLSW----NSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGN----DNLV  174 (318)
T ss_dssp             EEEECCSSCEEEEEE----ETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEET----TSCE
T ss_pred             EEecCccceEEEeec----CCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEec----Ccce
Confidence            999999999988765    346899999999999999887654 4567888899999999999999999986    5669


Q ss_pred             EEEeCCCCeeE----EEEecccccCCceEEEEEcCCCCEEE---EEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          558 VEWNESEGAIK----RTYQGLQLQHNSVSVVHFDTAKDQIL---AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       558 ~iwd~~~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l~---~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                      ++||+.+++..    .....+.   ..|..++++|++..++   +++.+++|++||.............   ..+..+.|
T Consensus       175 ~iwd~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~~---~~v~~~~~  248 (318)
T 4ggc_A          175 NVWPSAPGEGGWVPLQTFTQHQ---GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH---SQVCSILW  248 (318)
T ss_dssp             EEEESSCBTTBSCCSEEECCCC---SCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEECS---SCEEEEEE
T ss_pred             eEEECCCCcccccceeeecccC---CceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccce---eeeeeeee
Confidence            99999887532    2333333   7899999999876543   4668899999999998887776544   34789999


Q ss_pred             ecCCCEEEEEE--CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310          631 NKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1103)
Q Consensus       631 s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1103)
                      +|+++.+++++  .|+.|++||+.+++.+..+.+|...|++++|+                      ||++++++++.|+
T Consensus       249 ~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~s----------------------pdg~~l~S~s~D~  306 (318)
T 4ggc_A          249 SPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS----------------------PDGATVASAAADE  306 (318)
T ss_dssp             ETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETTT
T ss_pred             cccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc----------------------CCCCEEEEEecCC
Confidence            99999988765  78999999999999999999999999999997                      7899999999999


Q ss_pred             ccccccccc
Q 001310          709 KSEVEKPLF  717 (1103)
Q Consensus       709 ~i~~w~~~~  717 (1103)
                      +|++||+..
T Consensus       307 ~v~iWd~~~  315 (318)
T 4ggc_A          307 TLRLWRCFE  315 (318)
T ss_dssp             EEEEECCSC
T ss_pred             eEEEEECCC
Confidence            999999863

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.2e-30  Score=289.47  Aligned_cols=256  Identities=17%  Similarity=0.298  Sum_probs=217.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKV  469 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~i  469 (1103)
                      +.+|.+.|.+++|+|++++||+|+.||.|+|||+..+. ......+.+|...|++++|+++  ++  +|++++.||.|++
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~i   83 (379)
T 3jrp_A            7 ANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVLI   83 (379)
T ss_dssp             EEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEEE
T ss_pred             ecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-ceeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEEE
Confidence            67899999999999999999999999999999998432 1233367899999999999987  77  8999999999999


Q ss_pred             EeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEcc------
Q 001310          470 WDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA------  539 (1103)
Q Consensus       470 wd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~------  539 (1103)
                      ||+.+++  .+..+.+|...|.+++|++..++.++++++.||.|++||+....  ....+..+...|.+++|+|      
T Consensus        84 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~  163 (379)
T 3jrp_A           84 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  163 (379)
T ss_dssp             EEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC----
T ss_pred             EEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCcccccc
Confidence            9999997  77888899999999999876447899999999999999998874  3446677888999999999      


Q ss_pred             -------CCCEEEEEecCCCCceeEEEEeCCCCe----eEEEEecccccCCceEEEEEcCC---CCEEEEEeCCCcEEEE
Q 001310          540 -------NGRRLFSCGTSKEGESFLVEWNESEGA----IKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKIW  605 (1103)
Q Consensus       540 -------dg~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iw  605 (1103)
                             ++.++++++.    ++.|++||+.++.    ....+.+|.   ..|.+++|+|+   ++++++++.||.|++|
T Consensus       164 ~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~---~~v~~~~~sp~~~~~~~l~s~~~dg~i~iw  236 (379)
T 3jrp_A          164 GEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCIIW  236 (379)
T ss_dssp             ------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEETTSCEEEE
T ss_pred             ccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEeccc---CcEeEEEECCCCCCCCeEEEEeCCCEEEEE
Confidence                   6999999986    5569999998764    345566666   89999999999   8999999999999999


Q ss_pred             ECCCCe---eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310          606 DMNKVQ---LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       606 d~~~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                      |+.++.   .........+...+.+++|+|++++|++++.||.|++|++......
T Consensus       237 d~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  291 (379)
T 3jrp_A          237 TQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEGKW  291 (379)
T ss_dssp             EESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETTEE
T ss_pred             eCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCCcc
Confidence            999864   3333343334567899999999999999999999999999865433

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.97  E-value=1.4e-29  Score=292.18  Aligned_cols=275  Identities=16%  Similarity=0.241  Sum_probs=239.1

Q ss_pred             cCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310          393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       393 ~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      .+|...|.+++|  |+++|++|+.||.|++||+.+++...   .+.+|...|.+++|  +++  ++++|+.||+|++||+
T Consensus       130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~  200 (435)
T 1p22_A          130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV  200 (435)
T ss_dssp             CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred             cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence            357788998887  89999999999999999999987554   68899999999999  677  8999999999999999


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee---EEecCCCccEEEEEEccCCCEEEEEec
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR---VDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      .+++.+..+.+|...|.+++++    +..+++++.||.|++||+.+....   ..+..+...|.+++|  +++++++++.
T Consensus       201 ~~~~~~~~~~~h~~~v~~l~~~----~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~  274 (435)
T 1p22_A          201 NTGEMLNTLIHHCEAVLHLRFN----NGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG  274 (435)
T ss_dssp             SSCCEEEEECCCCSCEEEEECC----TTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred             CCCcEEEEEcCCCCcEEEEEEc----CCEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence            9999999999999999999984    359999999999999999987765   567788889999998  7889999976


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                          ++.|++||+.+++.+..+.+|.   ..+.++.+  +++.+++|+.||.|++||+.+++.+..+..|.  ..|.+++
T Consensus       275 ----dg~i~vwd~~~~~~~~~~~~~~---~~v~~~~~--~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~  343 (435)
T 1p22_A          275 ----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIR  343 (435)
T ss_dssp             ----TSEEEEEETTTCCEEEEEECCS---SCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred             ----CCeEEEEECCcCcEEEEEcCCC---CcEEEEEe--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEE
Confidence                6679999999999999999887   88999998  46799999999999999999999999998664  4688888


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCC---------eeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcc
Q 001310          630 FNKNGTLLAVIANENRIKILETPESN---------SVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~~~~~---------~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1103)
                      |  +++++++|+.||.|++||+.++.         .+..+.+|...|.++++.                        +..
T Consensus       344 ~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~------------------------~~~  397 (435)
T 1p22_A          344 F--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EFQ  397 (435)
T ss_dssp             C--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SSC
T ss_pred             e--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCCCCCeEEEEeC------------------------CCE
Confidence            8  78899999999999999997665         677788888888777663                        677


Q ss_pred             ceeeccccccccccccccC
Q 001310          701 EISVEAENKSEVEKPLFAR  719 (1103)
Q Consensus       701 l~s~~~d~~i~~w~~~~~~  719 (1103)
                      +++++.||.|++|++....
T Consensus       398 l~s~s~Dg~i~iwd~~~~~  416 (435)
T 1p22_A          398 IVSSSHDDTILIWDFLNDP  416 (435)
T ss_dssp             EEECCSSSEEEEEC-----
T ss_pred             EEEEeCCCEEEEEECCCCC
Confidence            9999999999999987543

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.1e-30  Score=289.53  Aligned_cols=259  Identities=14%  Similarity=0.153  Sum_probs=215.8

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC--CeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG--QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      +++++.+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+  +.+..                   +.+|...|.+++
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~~~~-------------------~~~h~~~v~~~~   62 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLIDT-------------------LTGHEGPVWRVD   62 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEEEEE-------------------ECCCSSCEEEEE
T ss_pred             ccEEecCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCcceeeeE-------------------ecCCCCcEEEEE
Confidence            4577899999999999999998 6899999999999999843  33322                   678999999999


Q ss_pred             ECCC--CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCc--e
Q 001310          404 WSPD--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--R  477 (1103)
Q Consensus       404 ~spd--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~  477 (1103)
                      |+|+  +++|++|+.||.|++||+.+++. .....+.+|...|.+++|+|+  +.  ++++++.|+.|++||+.++.  .
T Consensus        63 ~~~~~~~~~l~s~~~dg~v~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~  139 (379)
T 3jrp_A           63 WAHPKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTS  139 (379)
T ss_dssp             ECCGGGCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCC
T ss_pred             eCCCCCCCEEEEeccCCEEEEEEcCCCce-eEeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCcee
Confidence            9987  99999999999999999998752 123367789999999999999  88  89999999999999999874  4


Q ss_pred             eEEeecCCCceEEEEeeecC-----------CccEEEEEECCCeEEEEEcCCCCe----eEEecCCCccEEEEEEccC--
Q 001310          478 TYSFEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLGA----RVDYDAPGLGCTRMAYSAN--  540 (1103)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~~~~~i~~~~~s~d--  540 (1103)
                      ...+.+|...|.+++|++..           ++.++++++.||.|++||+.....    ...+..|...|.+++|+|+  
T Consensus       140 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~  219 (379)
T 3jrp_A          140 PIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVL  219 (379)
T ss_dssp             EEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCS
T ss_pred             eEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCC
Confidence            45677899999999997742           578999999999999999987653    3466778889999999999  


Q ss_pred             -CCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310          541 -GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       541 -g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  611 (1103)
                       +++|++++.    ++.|++||+.++..  .........+...|.+++|+|++++|++++.||.|++|++..+.
T Consensus       220 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~  289 (379)
T 3jrp_A          220 LRSYLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  289 (379)
T ss_dssp             SSEEEEEEET----TSCEEEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred             CCCeEEEEeC----CCEEEEEeCCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence             899999876    56699999988742  12222222234789999999999999999999999999987543

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.97  E-value=5.6e-29  Score=280.82  Aligned_cols=290  Identities=17%  Similarity=0.152  Sum_probs=238.7

Q ss_pred             ccCCCccEEEEEECCC---CCEEEEEeCCCeEEEEEecC-CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCce
Q 001310          392 VRDPGVSVNRVVWSPD---GSLLGVAYSKHIVQLYAYHG-GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTI  467 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spd---g~~las~~~d~~i~iwd~~~-~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i  467 (1103)
                      +.+|.+.|.+++|+|+   |++||+|+.||.|++||+.+ +..+  ...+.+|...|.+++|+|+++  +|++++.||.|
T Consensus        35 ~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~--~~~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~v  110 (368)
T 3mmy_A           35 TSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTI--PKAQQMHTGPVLDVCWSDDGS--KVFTASCDKTA  110 (368)
T ss_dssp             SSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEE--EEEEEECSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred             ccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCcee--EEEeccccCCEEEEEECcCCC--EEEEEcCCCcE
Confidence            7789999999999999   69999999999999999997 4332  136778999999999999999  89999999999


Q ss_pred             EEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          468 KVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       468 ~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      ++||+.+++.+. +.+|...|.+++|.+.+++.+|++++.||.|++||+.+.+....+..+. .+.++.+.+  ..++++
T Consensus       111 ~iwd~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~~--~~~~~~  186 (368)
T 3mmy_A          111 KMWDLSSNQAIQ-IAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE-RCYCADVIY--PMAVVA  186 (368)
T ss_dssp             EEEETTTTEEEE-EEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS-CEEEEEEET--TEEEEE
T ss_pred             EEEEcCCCCcee-eccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC-CceEEEecC--CeeEEE
Confidence            999999998776 5579999999999877888999999999999999999988887777654 555555554  466666


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCE----EEEEeCCCcEEEEECCCC---eeEEEEcCCC
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ----ILAAGDDHVIKIWDMNKV---QLLTTIDAGG  620 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----l~~~~~dg~i~iwd~~~~---~~~~~~~~~~  620 (1103)
                      +.    ++.+.+|++............. ....+.++.+.++...    +++++.||.|++|++...   ..+..+..+.
T Consensus       187 ~~----~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~  261 (368)
T 3mmy_A          187 TA----ERGLIVYQLENQPSEFRRIESP-LKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHR  261 (368)
T ss_dssp             EG----GGCEEEEECSSSCEEEEECCCS-CSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSE
T ss_pred             eC----CCcEEEEEeccccchhhhcccc-ccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeee
Confidence            65    5569999998765443322211 2345666666665544    999999999999999987   4556665553


Q ss_pred             CC----------CCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEe
Q 001310          621 GL----------PENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  690 (1103)
Q Consensus       621 ~~----------~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  690 (1103)
                      ..          ..|.+++|+|++++|++++.||.|++||+.+++.+..+..|...+.+++|+                 
T Consensus       262 ~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s-----------------  324 (368)
T 3mmy_A          262 SNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFN-----------------  324 (368)
T ss_dssp             EC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEEC-----------------
T ss_pred             cccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEEC-----------------
Confidence            21          158999999999999999999999999999999999999999999999997                 


Q ss_pred             cCCCCCCCccceeecccccccccccc
Q 001310          691 NEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                           |+++++++++.|+..+.|++.
T Consensus       325 -----~~g~~l~~~s~d~~~~~~~~~  345 (368)
T 3mmy_A          325 -----HNGNIFAYASSYDWSKGHEFY  345 (368)
T ss_dssp             -----TTSSCEEEEECCCSTTCGGGC
T ss_pred             -----CCCCeEEEEeccccccccccc
Confidence                 788999999999877777754

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.97  E-value=3.1e-29  Score=279.76  Aligned_cols=285  Identities=10%  Similarity=-0.001  Sum_probs=239.3

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      ..+|.+.|.+++|+|++++|++++.|+.|++||+.+++.......+.+|...|.+++|+|+++. +|++++.||.|++||
T Consensus         7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd   85 (342)
T 1yfq_A            7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD   85 (342)
T ss_dssp             SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred             ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence            5579999999999999999999999999999999987632223356689999999999999872 388899999999999


Q ss_pred             C-CCCceeEEeec--CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC---------CCeeEEecCCCccEEEEEEcc
Q 001310          472 A-VTGSRTYSFEG--HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS---------LGARVDYDAPGLGCTRMAYSA  539 (1103)
Q Consensus       472 ~-~~~~~~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~---------~~~~~~~~~~~~~i~~~~~s~  539 (1103)
                      + .+++. ..+.+  |...|.+++|++   +.++++++.|+.|++||+.+         .+....+. +...+.+++|+|
T Consensus        86 ~~~~~~~-~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~  160 (342)
T 1yfq_A           86 LIGSPSF-QALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNS  160 (342)
T ss_dssp             SSSSSSE-EECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECS
T ss_pred             eccCCce-EeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecC
Confidence            9 77754 77888  999999999976   57999999999999999987         55444444 777899999999


Q ss_pred             CCCEEEEEecCCCCceeEEEEeCCC-Cee--EEEEecccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCCC-----
Q 001310          540 NGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNKV-----  610 (1103)
Q Consensus       540 dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~-----  610 (1103)
                      ++  +++++.    ++.|++||+.+ +..  ......+.   ..+.+++|+| +++++++++.||.|++|++...     
T Consensus       161 ~~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~---~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~  231 (342)
T 1yfq_A          161 SR--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK---YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             SE--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS---SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             Cc--EEEEeC----CCeEEEEECCccccccceeeecCCC---CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccc
Confidence            88  777765    56799999988 543  22333344   7899999999 9999999999999999999887     


Q ss_pred             -eeEEEEcCCCC-------CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccc-ccceeeeEEecCCceeee
Q 001310          611 -QLLTTIDAGGG-------LPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVL-SDNLRKLSVNPISTVTGA  681 (1103)
Q Consensus       611 -~~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~~~~~~~~~  681 (1103)
                       +....+..+..       ...|.+++|+|++++|++++.||.|++||+.+++.+..+..| ...|.+++  |       
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h~~~v~~~~--~-------  302 (342)
T 1yfq_A          232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIA--C-------  302 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEE--E-------
T ss_pred             cccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcccCCCceEec--C-------
Confidence             77777776643       337899999999999999999999999999999999999888 88887766  3       


Q ss_pred             eccCCceEecCCCCCCCccceeeccccc-cccccc
Q 001310          682 GIANGSVSVNEDPKEDVKPEISVEAENK-SEVEKP  715 (1103)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~-i~~w~~  715 (1103)
                                     +++++++++.|+. .+.+..
T Consensus       303 ---------------~~~~l~s~s~Dg~~~~~~~~  322 (342)
T 1yfq_A          303 ---------------SDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---------------CSSEEEEEEECTHHHHCSSS
T ss_pred             ---------------CCCeEEEEecCCcccccccc
Confidence                           5778899999998 777764

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.97  E-value=2.5e-29  Score=281.37  Aligned_cols=296  Identities=11%  Similarity=0.122  Sum_probs=222.3

Q ss_pred             eeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc-ccceEeccccccEEEEEEec--CCCceEEEEEcCCCc
Q 001310          390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKT  466 (1103)
Q Consensus       390 ~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~  466 (1103)
                      .++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|.+++|+|  |++  +|++++.|+.
T Consensus         5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~   82 (351)
T 3f3f_A            5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT   82 (351)
T ss_dssp             CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred             ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence            347899999999999999999999999999999999976432 33446779999999999999  577  8999999999


Q ss_pred             eEEEeCCCC---------ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe------------
Q 001310          467 IKVWDAVTG---------SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY------------  525 (1103)
Q Consensus       467 i~iwd~~~~---------~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~------------  525 (1103)
                      |++||+.++         +.+..+.+|...|.+++|++..++.++++++.||.|++||+.+.+....+            
T Consensus        83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~  162 (351)
T 3f3f_A           83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP  162 (351)
T ss_dssp             EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred             EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence            999999987         56788899999999999987643789999999999999999887644322            


Q ss_pred             -cCCCccEEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCC----CEEEE
Q 001310          526 -DAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAK----DQILA  595 (1103)
Q Consensus       526 -~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~----~~l~~  595 (1103)
                       ..+...+.+++|+|+   +.++++++.    ++.+.+|+...++.  +..+.+|.   ..|.+++|+|++    ++|++
T Consensus       163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~---~~i~~~~~~p~~~~~~~~l~s  235 (351)
T 3f3f_A          163 PANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHK---SLIRSISWAPSIGRWYQLIAT  235 (351)
T ss_dssp             CSSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCC---SCEEEEEECCCSSCSSEEEEE
T ss_pred             cCCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCC---cceeEEEECCCCCCcceEEEE
Confidence             145668999999997   899999876    56688888777765  55666666   899999999998    79999


Q ss_pred             EeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE----ECCCeEEEEEcCCCCeeEeccccccceeeeE
Q 001310          596 AGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI----ANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1103)
Q Consensus       596 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~----~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~  671 (1103)
                      ++.||.|++||+..+.........  .........++....+..+    .....+.+|+....+.+..+.+|...|++++
T Consensus       236 ~~~dg~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~  313 (351)
T 3f3f_A          236 GCKDGRIRIFKITEKLSPLASEES--LTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHDDHNGEVWSVS  313 (351)
T ss_dssp             EETTSCEEEEEEEECC-----------------------------------------CCSEEEEEEEEECTTSSCEEEEE
T ss_pred             EcCCCeEEEEeCCCCcCccccCCc--ccceeccCCCcccccccccccccccceeeeecccccccEEEEEecccccEEEEE
Confidence            999999999999876554433222  1123333344444333333    2344556666666677888889999999999


Q ss_pred             EecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccccc
Q 001310          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1103)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1103)
                      |+                      |+++++++++.|+.|++|++...
T Consensus       314 ~s----------------------~~~~~l~s~~~dg~v~iw~~~~~  338 (351)
T 3f3f_A          314 WN----------------------LTGTILSSAGDDGKVRLWKATYS  338 (351)
T ss_dssp             EC----------------------SSSCCEEEEETTSCEEEEEECTT
T ss_pred             Ec----------------------CCCCEEEEecCCCcEEEEecCcC
Confidence            97                      78899999999999999998753

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2e-28  Score=283.95  Aligned_cols=301  Identities=12%  Similarity=0.010  Sum_probs=234.6

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCC---eeeeeeeeEeecccc----------------------------
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQ---KLFIRNFKVWDIGAC----------------------------  383 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~---~~~~~~~~~~~~~~~----------------------------  383 (1103)
                      .++.+++|+|||+ +|+++ .++.|++||+.+|+   .+..     |.....                            
T Consensus         5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   77 (450)
T 2vdu_B            5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK   77 (450)
T ss_dssp             CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred             ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence            3899999999999 56655 46899999999998   4432     221100                            


Q ss_pred             ------------ccceeeeeccCCCccEEEEEECCCCCEE-EEEeCCCeEEEEEec--CCCccccceEeccccccEEEEE
Q 001310          384 ------------SMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH--GGSDARQQLEIDAHVGNVNDLA  448 (1103)
Q Consensus       384 ------------~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~iwd~~--~~~~~~~~~~l~~h~~~v~~~~  448 (1103)
                                  ..........+|.+.|.+++|+|||++| |+++.||.|+|||+.  +++.+.... ...|...|.+++
T Consensus        78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~  156 (450)
T 2vdu_B           78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS  156 (450)
T ss_dssp             ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred             cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence                        0000111234677789999999999996 889999999999999  776555221 125678999999


Q ss_pred             EecCCCceEEEEEcCCCceEEEeCCCCceeE----EeecCCCceEEEEeeec-CCccEEEEEECCCeEEEEEcCCCCeeE
Q 001310          449 FSAPCKQISVITCGDDKTIKVWDAVTGSRTY----SFEGHGAPVYSLCPHAK-ENIHFIFSISVDGKIKAWLYDSLGARV  523 (1103)
Q Consensus       449 ~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~----~~~~~~~~v~~~~~~~~-~~~~~l~s~~~dg~i~iwd~~~~~~~~  523 (1103)
                      |+|+++  +|++++.|+.|++|++.+++...    .+.+|...|.+++|++. ..+.+|++++.|+.|++||+.++....
T Consensus       157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~  234 (450)
T 2vdu_B          157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD  234 (450)
T ss_dssp             ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred             EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence            999999  89999999999999998887554    78899999999999774 226899999999999999999888777


Q ss_pred             E-ecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc----------------------ccCCc
Q 001310          524 D-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ----------------------LQHNS  580 (1103)
Q Consensus       524 ~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------------------~~~~~  580 (1103)
                      . +..|...|.+++|+ ++++|++++.    ++.|++||+.+++.+..+..+.                      .....
T Consensus       235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  309 (450)
T 2vdu_B          235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA  309 (450)
T ss_dssp             EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred             eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence            6 55788999999999 9999999985    6679999999999888886431                      12357


Q ss_pred             eEEEEEcCCCCEEEEEe-CCCcEEEEEC--CCC---eeEEEEcCCCCCCCCceEEEecCCCEEEEEEC------CCeEEE
Q 001310          581 VSVVHFDTAKDQILAAG-DDHVIKIWDM--NKV---QLLTTIDAGGGLPENPRICFNKNGTLLAVIAN------ENRIKI  648 (1103)
Q Consensus       581 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------dg~i~i  648 (1103)
                      +..++|+|+++++++++ .++.|++|++  ..+   +.+..+..+   ..+.+++|+|++.++++++.      +..|.+
T Consensus       310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v  386 (450)
T 2vdu_B          310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF  386 (450)
T ss_dssp             EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred             EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence            89999999999999998 8999999999  555   666777665   45899999996533333332      455788


Q ss_pred             EEcCC
Q 001310          649 LETPE  653 (1103)
Q Consensus       649 w~~~~  653 (1103)
                      |.+..
T Consensus       387 ~~~~~  391 (450)
T 2vdu_B          387 IEYNL  391 (450)
T ss_dssp             EEEET
T ss_pred             EEEEc
Confidence            87653

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.97  E-value=2.4e-27  Score=269.81  Aligned_cols=279  Identities=11%  Similarity=0.103  Sum_probs=228.5

Q ss_pred             eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE-EEEeCCCeEEEEEec
Q 001310          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL-GVAYSKHIVQLYAYH  426 (1103)
Q Consensus       348 ~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l-as~~~d~~i~iwd~~  426 (1103)
                      +++++++.|+.|++||+.+++.+..                   +.+| ..+.+++|+|||++| ++++.|+.|++||+.
T Consensus         3 ~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~   62 (391)
T 1l0q_A            3 FAYIANSESDNISVIDVTSNKVTAT-------------------IPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (391)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEE-------------------EECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEcCCCCEEEEEECCCCeEEEE-------------------eecC-CCcceEEECCCCCEEEEECCCCCeEEEEECC
Confidence            5889999999999999999987754                   3344 458999999999987 566789999999999


Q ss_pred             CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEE-EEE
Q 001310          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI  505 (1103)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~  505 (1103)
                      +++.+.   .+..+. .+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+ ..+.+++|++  ++..+ +++
T Consensus        63 ~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~~  134 (391)
T 1l0q_A           63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVTN  134 (391)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEEE
T ss_pred             CCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEEe
Confidence            987554   444444 8999999999994 3456777899999999999998888754 4678888855  56666 788


Q ss_pred             ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEE
Q 001310          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1103)
Q Consensus       506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1103)
                      +.++.|++||+.+++....+..+ ..+.+++|+|+++++++++.   .++.|++||+.+++.+..+..+    ..+.+++
T Consensus       135 ~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~----~~~~~~~  206 (391)
T 1l0q_A          135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVE----AAPSGIA  206 (391)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECS----SEEEEEE
T ss_pred             CCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecC----CCccceE
Confidence            88999999999988877776654 45689999999999865542   2567999999999888777643    4789999


Q ss_pred             EcCCCCEEEEEe---CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeEecc
Q 001310          586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       586 ~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                      |+|+++++++++   .++.|++||+.+++.+..+..+.   .+.+++|+|+|+++ ++++.|+.|++||+.+++.+..+.
T Consensus       207 ~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~  283 (391)
T 1l0q_A          207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATNTITATMA  283 (391)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCCcEEEEEE
Confidence            999999999987   68999999999999988887653   36889999999987 566789999999999998877766


Q ss_pred             cccc
Q 001310          662 VLSD  665 (1103)
Q Consensus       662 ~~~~  665 (1103)
                      .+..
T Consensus       284 ~~~~  287 (391)
T 1l0q_A          284 VGKN  287 (391)
T ss_dssp             CSSS
T ss_pred             CCcC
Confidence            5544

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.97  E-value=1.1e-28  Score=275.31  Aligned_cols=284  Identities=13%  Similarity=0.122  Sum_probs=216.1

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ..++++.+|.+.|++++|||||+ +||+|+.++ ++|||+.+++.....                     +...+..+++
T Consensus        10 ~~~~~~~~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~~---------------------~~~~~~~~~~   66 (355)
T 3vu4_A           10 NPIVPENHVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMSQ---------------------EMRHLSKVRM   66 (355)
T ss_dssp             ---------CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEEE---------------------ECSCCCEEEE
T ss_pred             CCccccccCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeeee---------------------ecCCeEEEEE
Confidence            34456789999999999999998 688988765 789999887655431                     1125788999


Q ss_pred             CCCCCEEE-EEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC-ceeEEee
Q 001310          405 SPDGSLLG-VAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG-SRTYSFE  482 (1103)
Q Consensus       405 spdg~~la-s~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~-~~~~~~~  482 (1103)
                      ++++++++ +++.|++|++||+.+++.+.   .+. |...|.+++|+++.    ++.+ .|+.|++||+.++ +.+..+.
T Consensus        67 ~~~~~~~~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~-~~~~i~i~d~~~~~~~~~~~~  137 (355)
T 3vu4_A           67 LHRTNYVAFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVS-YGDVISVFKFGNPWKRITDDI  137 (355)
T ss_dssp             CTTSSEEEEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEE-ETTEEEEEESSTTCCBSSCCE
T ss_pred             cCCCCEEEEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEE-EcCEEEEEECCCCceeeEEec
Confidence            99998885 56778999999999987655   443 66789999998864    3333 3789999999998 7776665


Q ss_pred             cCCCceEEEEeeecCCccEEEE--EECCCeEEEEEcCCCC----------------eeEEecCCCccEEEEEEccCCCEE
Q 001310          483 GHGAPVYSLCPHAKENIHFIFS--ISVDGKIKAWLYDSLG----------------ARVDYDAPGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s--~~~dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~~~~s~dg~~l  544 (1103)
                      .   +...+++++    .+++.  |+.||.|++||+.+..                ....+..|...|.+++|+|+|++|
T Consensus       138 ~---~~~~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l  210 (355)
T 3vu4_A          138 R---FGGVCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMV  210 (355)
T ss_dssp             E---EEEEEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEE
T ss_pred             c---CCceEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEE
Confidence            5   333444543    35555  6899999999998765                256788999999999999999999


Q ss_pred             EEEecCCCCcee-EEEEeCCCCeeEEEEe-c-ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEE---
Q 001310          545 FSCGTSKEGESF-LVEWNESEGAIKRTYQ-G-LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTI---  616 (1103)
Q Consensus       545 ~~~~~~~~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~---  616 (1103)
                      ++++.    ++. |++||+.+++.+..+. + |.   ..|.+++|+|++++|++++.|++|++||+..+...  ..+   
T Consensus       211 ~s~s~----d~~~v~iwd~~~~~~~~~~~~g~h~---~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~  283 (355)
T 3vu4_A          211 ATCSQ----DGTIIRVFKTEDGVLVREFRRGLDR---ADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGW  283 (355)
T ss_dssp             EEEET----TCSEEEEEETTTCCEEEEEECTTCC---SCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTT
T ss_pred             EEEeC----CCCEEEEEECCCCcEEEEEEcCCCC---CcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccce
Confidence            99986    776 9999999999999998 5 66   89999999999999999999999999999765321  111   


Q ss_pred             ---------------cCC-CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC
Q 001310          617 ---------------DAG-GGLPENPRICFNKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       617 ---------------~~~-~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                                     ... ........++|+++++++++++.||.+++|++..+
T Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          284 INMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             EECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             eeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                           000 11122467999999999999999999999987643

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=2e-27  Score=249.41  Aligned_cols=294  Identities=14%  Similarity=0.135  Sum_probs=206.3

Q ss_pred             cEEEEEE-ecCCCceEEEEEcCCCceEEEeCCCC---ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC
Q 001310          443 NVNDLAF-SAPCKQISVITCGDDKTIKVWDAVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS  518 (1103)
Q Consensus       443 ~v~~~~~-s~d~~~~~l~s~~~d~~i~iwd~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~  518 (1103)
                      .+.++-| .++.+.+.+++++ ...|++|+..++   ++++++.+|..+|..+.+.|+.-+-..++-+            
T Consensus        41 ~~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~------------  107 (356)
T 2w18_A           41 DVSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALG------------  107 (356)
T ss_dssp             EEEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEEC------------
T ss_pred             EEeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeec------------
Confidence            3556656 3455666778887 558999999999   8999999999999999997654332222211            


Q ss_pred             CCeeEEecCCCccEEEEEEccC----CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEE
Q 001310          519 LGARVDYDAPGLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQIL  594 (1103)
Q Consensus       519 ~~~~~~~~~~~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~  594 (1103)
                             ..+...|.+++++||    ++.+++++.      .+.+|++.+++                         .+.
T Consensus       108 -------~~~~~~v~sla~spd~~~~~~~l~s~g~------~~~v~~l~~g~-------------------------lv~  149 (356)
T 2w18_A          108 -------NLEIREIRALFCSSDDESEKQVLLKSGN------IKAVLGLTKRR-------------------------LVS  149 (356)
T ss_dssp             -------SSSEEEEEEECC------CCEEEEEEEE------EEEEEEETTTE-------------------------EEE
T ss_pred             -------cccccceEEEEECCCccccccEEEeCCC------eEEEEecCCCc-------------------------EEE
Confidence                   123457889999999    999998753      26667543333                         333


Q ss_pred             EEe--CCCcEEEEEC-CCCeeEEEEcCCCCCCCCceEEEec---CCCEEEEEECCCeEEEEEcCCCCeeEecccccccee
Q 001310          595 AAG--DDHVIKIWDM-NKVQLLTTIDAGGGLPENPRICFNK---NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLR  668 (1103)
Q Consensus       595 ~~~--~dg~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~~s~---~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~  668 (1103)
                      +++  .|+.|++|++ .+|+.+..+..+.  ..+..++|++   ++.+|++++.|++|+|||+.+++.+..+.++..   
T Consensus       150 ss~~g~d~~V~~~~~s~dG~~~~s~~~~~--~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~---  224 (356)
T 2w18_A          150 SSGTLSDQQVEVMTFAEDGGGKENQFLMP--PEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDS---  224 (356)
T ss_dssp             EESSSTTCEEEEEEECTTSCEEEEEEECC--CSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC----
T ss_pred             ecccCCCCcEEEEEECCCCceeeeeccCC--CceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCc---
Confidence            322  4777777777 4466666666664  4578899999   789999999999999999999988877653221   


Q ss_pred             eeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcE
Q 001310          669 KLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQA  748 (1103)
Q Consensus       669 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~  748 (1103)
                                                                                      +...+.+++|+|+|..
T Consensus       225 ----------------------------------------------------------------~v~~v~~vafSpdG~~  240 (356)
T 2w18_A          225 ----------------------------------------------------------------YQASVCHKAYSEMGLL  240 (356)
T ss_dssp             ------------------------------------------------------------------CCCEEEEEEETTEE
T ss_pred             ----------------------------------------------------------------ceeeeEEEEECCCCCE
Confidence                                                                            1235677889999987


Q ss_pred             EEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEE
Q 001310          749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISL  827 (1103)
Q Consensus       749 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~i  827 (1103)
                      +++++.+..  +|                                                      .+++++ |++|++
T Consensus       241 lvs~s~~~~--~w------------------------------------------------------~laSGs~D~tIkl  264 (356)
T 2w18_A          241 FIVLSHPCA--KE------------------------------------------------------SESLRSPVFQLIV  264 (356)
T ss_dssp             EEEEC--------------------------------------------------------------------CCEEEEE
T ss_pred             EEEeccCCC--cc------------------------------------------------------eeeccCCCcEEEE
Confidence            777664311  11                                                      345665 788999


Q ss_pred             EEcCCceeeEEe-----cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEE-EEEEccCCCEE
Q 001310          828 YIVMTFKTILTI-----MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVT-GLVFSDALNIL  901 (1103)
Q Consensus       828 wd~~~~~~~~~~-----~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~-~l~~s~dg~~l  901 (1103)
                      ||..+++.+..+     .+|...+.+..+   ++.++|+|+.||+|+|||+.+++++.++.+|.+.+. .++|||||++|
T Consensus       265 Wd~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~L  341 (356)
T 2w18_A          265 INPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHL  341 (356)
T ss_dssp             EETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCEEEECSSSSEE
T ss_pred             EECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEEEEECCCCCEE
Confidence            999999887665     355555444444   467999999999999999999999999999988665 58999999999


Q ss_pred             EEEeCCCeEEEEEc
Q 001310          902 VSSGGDAQIFVWDV  915 (1103)
Q Consensus       902 ~s~s~dg~I~iwd~  915 (1103)
                      ++|+.|++|+|||+
T Consensus       342 aSGS~D~TIklWd~  355 (356)
T 2w18_A          342 LAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECTTSCEEEEEE
T ss_pred             EEEECCCcEEEecC
Confidence            99999999999996

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.97  E-value=5.9e-28  Score=253.40  Aligned_cols=270  Identities=10%  Similarity=0.048  Sum_probs=202.1

Q ss_pred             EEEEEECCCeEEEEEcCCC---CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310          636 LLAVIANENRIKILETPES---NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1103)
Q Consensus       636 ~l~~~~~dg~i~iw~~~~~---~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1103)
                      .++++++ ..|++|+..++   +.+.+..++..+|..+.+.|+...                      |+...-      
T Consensus        56 ~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~----------------------~~~~~~------  106 (356)
T 2w18_A           56 CIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYN----------------------LVCVAL------  106 (356)
T ss_dssp             EEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCS----------------------CEEEEE------
T ss_pred             EEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccc----------------------eeeeee------
Confidence            5666665 68999999998   788899999999998888754322                      221111      


Q ss_pred             ccccccCCccceeeeccCccccccEEEEEEecC----CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNG----GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1103)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~----g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1103)
                                       ..-+...|++++++|+    ++.++.++.+  +.+|++                         
T Consensus       107 -----------------~~~~~~~v~sla~spd~~~~~~~l~s~g~~--~~v~~l-------------------------  142 (356)
T 2w18_A          107 -----------------GNLEIREIRALFCSSDDESEKQVLLKSGNI--KAVLGL-------------------------  142 (356)
T ss_dssp             -----------------CSSSEEEEEEECC------CCEEEEEEEEE--EEEEEE-------------------------
T ss_pred             -----------------ccccccceEEEEECCCccccccEEEeCCCe--EEEEec-------------------------
Confidence                             0125578999999999    9988887744  555542                         


Q ss_pred             CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc---CCeEEEEEc-CCceeeEEecCCCCCeeEEEEcC--CCCCEEEEE
Q 001310          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS---GGVISLYIV-MTFKTILTIMPPSPTATSLAFNP--HDNNVIAIG  862 (1103)
Q Consensus       789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~-~~~~~~~~~~~~~~~i~~l~~s~--~d~~~lasg  862 (1103)
                                             ++++++.++.   |+.|++|++ .+++.+..+..|...++.++|++  +++.+||+|
T Consensus       143 -----------------------~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSg  199 (356)
T 2w18_A          143 -----------------------TKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGT  199 (356)
T ss_dssp             -----------------------TTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEE
T ss_pred             -----------------------CCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEe
Confidence                                   3566666654   788999998 45888888888888888888887  467899999


Q ss_pred             eCCCeEEEEEcCCceeEEEeccCC---CCEEEEEEccCCCEE------------EEEeCCCeEEEEEcCCCceeeeeeee
Q 001310          863 MDDSTILIYNARSSEVISKLEGHS---KRVTGLVFSDALNIL------------VSSGGDAQIFVWDVDGWGIQTCRSLQ  927 (1103)
Q Consensus       863 ~~dg~v~iwd~~~~~~~~~l~~h~---~~V~~l~~s~dg~~l------------~s~s~dg~I~iwd~~~~~~~~~~~~~  927 (1103)
                      +.|++|+|||+.+|+++.++.+|.   ..+.+++|||||+++            ++|+.|++|++||..+++......+.
T Consensus       200 S~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~  279 (356)
T 2w18_A          200 TIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYC  279 (356)
T ss_dssp             ETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEEC
T ss_pred             cCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEee
Confidence            999999999999999999998754   467788999999886            66888999999999998765533333


Q ss_pred             cCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeE-EEEEccCCCEEEEEecCCcEEEE
Q 001310          928 TPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPIS-QATFSCDCRMVFTSFVDGTLSIH 1005 (1103)
Q Consensus       928 ~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~-~l~fs~dg~~l~t~~~dg~v~vW 1005 (1103)
                      .+.+|..   .+.  ..+.++.++|++ .|++|+|||+.+++++.+ +.+|...+. .++|||||++|++|+.|++|+||
T Consensus       280 ~p~Gh~~---~~l--sg~~sg~~lASgS~DgTIkIWDl~tGk~l~t-L~gH~~~vvs~vafSPDG~~LaSGS~D~TIklW  353 (356)
T 2w18_A          280 LPPGQAG---RFL--EGDVKDHCAAAILTSGTIAIWDLLLGQCTAL-LPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVY  353 (356)
T ss_dssp             CCTTCCC---CEE--EEEEETTEEEEEETTSCEEEEETTTCSEEEE-ECCC--CCCCEEEECSSSSEEEEECTTSCEEEE
T ss_pred             ccCCCcc---eeE--ccccCCCEEEEEcCCCcEEEEECCCCcEEEE-ecCCCCCeEEEEEECCCCCEEEEEECCCcEEEe
Confidence            3455543   333  333348888885 799999999999999988 567766554 68999999999999999999999


Q ss_pred             eC
Q 001310         1006 EA 1007 (1103)
Q Consensus      1006 d~ 1007 (1103)
                      |+
T Consensus       354 d~  355 (356)
T 2w18_A          354 HY  355 (356)
T ss_dssp             EE
T ss_pred             cC
Confidence            96

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.96  E-value=1.2e-26  Score=264.20  Aligned_cols=328  Identities=11%  Similarity=0.131  Sum_probs=252.8

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEE-EEEECCCeEEEEEcCCCCeeEEecCCCccEEEE
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRM  535 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~  535 (1103)
                      ++++++.|+.|++||+.+++.+..+..|.. +.+++|++  ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus         4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~~-~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~   79 (391)
T 1l0q_A            4 AYIANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV   79 (391)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred             EEEEcCCCCEEEEEECCCCeEEEEeecCCC-cceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence            789999999999999999999999987754 78888855  66665 677799999999999888877776555 89999


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEE
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLT  614 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~  614 (1103)
                      +|+|+++++++++.   .++.|++||+.+++.+..+..+.    .+.+++|+|+++.+ ++++.++.|++||+.+++.+.
T Consensus        80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~  152 (391)
T 1l0q_A           80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK----SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVIN  152 (391)
T ss_dssp             EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS----SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC----CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEE
Confidence            99999999877653   25679999999999888877543    68999999999988 677889999999999999988


Q ss_pred             EEcCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCC
Q 001310          615 TIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1103)
Q Consensus       615 ~~~~~~~~~~v~~v~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1103)
                      .+..+.   .+..++|+|+++++ ++++.++.|++||+.+++....+.                                
T Consensus       153 ~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~--------------------------------  197 (391)
T 1l0q_A          153 TVSVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK--------------------------------  197 (391)
T ss_dssp             EEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE--------------------------------
T ss_pred             EEecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEEEEe--------------------------------
Confidence            887653   36899999999887 566778999999987653221110                                


Q ss_pred             CCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccc
Q 001310          694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  773 (1103)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~  773 (1103)
                                                                                                      
T Consensus       198 --------------------------------------------------------------------------------  197 (391)
T 1l0q_A          198 --------------------------------------------------------------------------------  197 (391)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             cccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc----CCeEEEEEcCCceeeEEecCCCCCeeEE
Q 001310          774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----GGVISLYIVMTFKTILTIMPPSPTATSL  849 (1103)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~----dg~i~iwd~~~~~~~~~~~~~~~~i~~l  849 (1103)
                                                 +...+.+++|+|+++++++++    ++.|++||+.+++.+..+..+. .+.++
T Consensus       198 ---------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~  249 (391)
T 1l0q_A          198 ---------------------------VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGI  249 (391)
T ss_dssp             ---------------------------CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEE
T ss_pred             ---------------------------cCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEE
Confidence                                       122345566677776666654    5788999998888888887654 57899


Q ss_pred             EEcCCCCCEE-EEEeCCCeEEEEEcCCceeEEEeccCCCCEE---EEE------------EccCC----------CEEEE
Q 001310          850 AFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVT---GLV------------FSDAL----------NILVS  903 (1103)
Q Consensus       850 ~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~---~l~------------~s~dg----------~~l~s  903 (1103)
                      +|+| ++++| ++++.|+.|++||+.+++.+..+..|..+..   .+.            |+.+.          ..+..
T Consensus       250 ~~s~-dg~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~  328 (391)
T 1l0q_A          250 AVTP-DGKKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTD  328 (391)
T ss_dssp             EECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEE
T ss_pred             EEcc-CCCEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEe
Confidence            9999 77766 6778899999999999999988877655421   122            32221          34566


Q ss_pred             EeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE
Q 001310          904 SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1103)
Q Consensus       904 ~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  953 (1103)
                      .+.|..+++|++.+|....      .        .-....|+++|.+.+.
T Consensus       329 ~~~~~~~~~W~~~~g~~~~------~--------~~~~~~~~~~g~y~~~  364 (391)
T 1l0q_A          329 LSKDATEWKWDFGDGSSSK------K--------QNPTHTYSETGIYTVR  364 (391)
T ss_dssp             CCBSCSEEEEECSSSCEEC------S--------SSCEECCSSCEEEEEE
T ss_pred             CCCCceEEEEECCCCcccC------c--------CCCeEEeCCCceEEEE
Confidence            6778899999998866211      1        1224689999998875

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3.1e-29  Score=308.85  Aligned_cols=260  Identities=13%  Similarity=0.152  Sum_probs=212.3

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      ..++.+|.+.|++++|+|+|+ ++++|+.||+|+|||+.++.....                 ..+.+|.+.|.+++|+|
T Consensus         2 ~~~l~gH~~~V~~l~~s~dg~-~latg~~dg~I~vwd~~~~~~~~~-----------------~~l~~h~~~V~~l~~s~   63 (753)
T 3jro_A            2 VVIANAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKLI-----------------DTLTGHEGPVWRVDWAH   63 (753)
T ss_dssp             ------CCCCEEEECCCSSSC-CEEEEETTTEEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECC
T ss_pred             eeecccCcceeEEEEECCCCC-eEEEEECCCcEEEEecCCCCCccc-----------------eeccCCcCceEEEEecC
Confidence            467899999999999999998 689999999999999984432211                 12678999999999999


Q ss_pred             C--CCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceEEEeCCCCc--eeEE
Q 001310          407 D--GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIKVWDAVTGS--RTYS  480 (1103)
Q Consensus       407 d--g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~iwd~~~~~--~~~~  480 (1103)
                      +  +++|++|+.||+|++||+.+++. .....+.+|...|.+++|+|+  +.  .+++|+.||.|++||+.++.  ....
T Consensus        64 ~~~~~~l~s~s~Dg~I~vwd~~~~~~-~~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~  140 (753)
T 3jro_A           64 PKFGTILASCSYDGKVLIWKEENGRW-SQIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPII  140 (753)
T ss_dssp             TTSCSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEE
T ss_pred             CCCCCEEEEEeCCCeEEEEECCCCcc-cccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeE
Confidence            8  99999999999999999998752 233367789999999999999  88  89999999999999998873  4566


Q ss_pred             eecCCCceEEEEeeecC-----------CccEEEEEECCCeEEEEEcCCCC----eeEEecCCCccEEEEEEccC---CC
Q 001310          481 FEGHGAPVYSLCPHAKE-----------NIHFIFSISVDGKIKAWLYDSLG----ARVDYDAPGLGCTRMAYSAN---GR  542 (1103)
Q Consensus       481 ~~~~~~~v~~~~~~~~~-----------~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~~~~~~i~~~~~s~d---g~  542 (1103)
                      +.+|...|.+++|++..           ++.++++|+.||.|++||+.+..    ....+..|...|.+++|+|+   ++
T Consensus       141 ~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~  220 (753)
T 3jro_A          141 IDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRS  220 (753)
T ss_dssp             EECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSE
T ss_pred             eecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCC
Confidence            78899999999998742           56799999999999999998774    34467788999999999999   89


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeeE--EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310          543 RLFSCGTSKEGESFLVEWNESEGAIK--RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~--~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  611 (1103)
                      ++++++.    ++.|++||+.+++..  ........+...|.+++|+|+++++++++.||.|++|++..+.
T Consensus       221 ~l~s~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          221 YLASVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEEEEES----SSCEEEEEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             EEEEEec----CCEEEEecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            9999986    566999999886421  1122222234789999999999999999999999999998643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.96  E-value=2.5e-28  Score=278.81  Aligned_cols=285  Identities=13%  Similarity=0.146  Sum_probs=233.1

Q ss_pred             cEEEEEECCCCCEEE-EEeCCCeEEEEEecCCCc-cccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCC
Q 001310          398 SVNRVVWSPDGSLLG-VAYSKHIVQLYAYHGGSD-ARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       398 ~V~~~~~spdg~~la-s~~~d~~i~iwd~~~~~~-~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      ....++++|+...++ +++.||.|+||++..... ......+.+|...|.+++|+| ++.  +|++|+.||+|++||+.+
T Consensus        36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~  113 (402)
T 2aq5_A           36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD  113 (402)
T ss_dssp             SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred             CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence            445688998876554 578899999999965432 233445779999999999999 787  899999999999999998


Q ss_pred             C-------ceeEEeecCCCceEEEEeeecCCc-cEEEEEECCCeEEEEEcCCCCeeEEe--cCCCccEEEEEEccCCCEE
Q 001310          475 G-------SRTYSFEGHGAPVYSLCPHAKENI-HFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       475 ~-------~~~~~~~~~~~~v~~~~~~~~~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~dg~~l  544 (1103)
                      +       +++..+.+|...|.+++|++  ++ .+|++++.||.|++||+.+++....+  ..+...|.+++|+|++++|
T Consensus       114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p--~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  191 (402)
T 2aq5_A          114 GGLVLPLREPVITLEGHTKRVGIVAWHP--TAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALI  191 (402)
T ss_dssp             TCCSSCBCSCSEEEECCSSCEEEEEECS--SBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCE
T ss_pred             CCCccccCCceEEecCCCCeEEEEEECc--CCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEE
Confidence            8       67889999999999999976  44 59999999999999999999888888  7889999999999999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEE-ecccccCCceEEEEEcCCCCEEEEE---eCCCcEEEEECCCCee-EEEEcCC
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTY-QGLQLQHNSVSVVHFDTAKDQILAA---GDDHVIKIWDMNKVQL-LTTIDAG  619 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~  619 (1103)
                      ++++.    ++.|++||+++++.+..+ .+|.  ...+..+.|+|++.++++|   +.|+.|++||+.+++. +......
T Consensus       192 ~~~~~----d~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~  265 (402)
T 2aq5_A          192 CTSCR----DKRVRVIEPRKGTVVAEKDRPHE--GTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELD  265 (402)
T ss_dssp             EEEET----TSEEEEEETTTTEEEEEEECSSC--SSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECC
T ss_pred             EEEec----CCcEEEEeCCCCceeeeeccCCC--CCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEecc
Confidence            99986    667999999999999888 6666  2348999999999999998   7999999999998764 3333322


Q ss_pred             CCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCe-eEeccc--cccceeeeEEecCCceeeeeccCCceEecCCCC
Q 001310          620 GGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNS-VDAAGV--LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1103)
Q Consensus       620 ~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~-~~~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1103)
                       +...+.+++|+|+++++++++ .|+.|++|++.+++. +..+..  +...+.+++|+                      
T Consensus       266 -~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~s----------------------  322 (402)
T 2aq5_A          266 -TSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYM----------------------  322 (402)
T ss_dssp             -CCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEEC----------------------
T ss_pred             -CCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEe----------------------
Confidence             234589999999999997554 799999999998874 444444  34778888887                      


Q ss_pred             CCCccceeeccccccccccccc
Q 001310          696 EDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       696 ~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                      |++.++++  .++.+++|++..
T Consensus       323 p~~~~~~s--~~~~~~~~~l~~  342 (402)
T 2aq5_A          323 PKRGLEVN--KCEIARFYKLHE  342 (402)
T ss_dssp             CGGGSCGG--GTEEEEEEEEET
T ss_pred             ccccccee--cceeEEEEEcCC
Confidence            56666664  456899999863

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.96  E-value=2.2e-27  Score=264.82  Aligned_cols=291  Identities=10%  Similarity=0.112  Sum_probs=208.7

Q ss_pred             EEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~  638 (1103)
                      +|++.+.+.+.....|.   ..|.+++|+|++++|++|+.++ +++|+..+++.......+    .+..+++.++++.++
T Consensus         3 i~s~~~~~~~~~~~~h~---~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~   74 (355)
T 3vu4_A            3 LGSMITRNPIVPENHVS---NPVTDYEFNQDQSCLILSTLKS-FEIYNVHPVAHIMSQEMR----HLSKVRMLHRTNYVA   74 (355)
T ss_dssp             ----------------C---CCCCEEEECTTSSEEEEECSSE-EEEEEETTEEEEEEEECS----CCCEEEECTTSSEEE
T ss_pred             cccccccCCccccccCC---CceEEEEECCCCCEEEEEcCCE-EEEEecCCcceeeeeecC----CeEEEEEcCCCCEEE
Confidence            45566666666666666   8999999999999999888765 789999988777665433    367889999888874


Q ss_pred             -EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310          639 -VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       639 -~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                       +++.|+.|++||..+++.+..+.                                                        
T Consensus        75 ~~~~~d~~v~iWd~~~~~~~~~~~--------------------------------------------------------   98 (355)
T 3vu4_A           75 FVTGVKEVVHIWDDVKKQDVSRIK--------------------------------------------------------   98 (355)
T ss_dssp             EECSSTTEEEEEETTTTEEEEEEE--------------------------------------------------------
T ss_pred             EEECCccEEEEEECCCCcEEEEEE--------------------------------------------------------
Confidence             56778999999998876554432                                                        


Q ss_pred             cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCC-ccccccccccccCCeeecCCCCCceeeccC
Q 001310          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN-DLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1103)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (1103)
                                     +...|.++.++++.  +++ ..++.+++|++... ..                      +.... 
T Consensus        99 ---------------~~~~v~~v~~~~~~--~~~-~~~~~i~i~d~~~~~~~----------------------~~~~~-  137 (355)
T 3vu4_A           99 ---------------VDAPVKDLFLSREF--IVV-SYGDVISVFKFGNPWKR----------------------ITDDI-  137 (355)
T ss_dssp             ---------------CSSCEEEEEECSSE--EEE-EETTEEEEEESSTTCCB----------------------SSCCE-
T ss_pred             ---------------CCCceEEEEEcCCE--EEE-EEcCEEEEEECCCCcee----------------------eEEec-
Confidence                           22356677777664  222 34678888887653 11                      11100 


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEE--c-CCeEEEEEcCCce----------------eeEEecCCCCCeeEEEEcCCCCC
Q 001310          797 TDSNSQEAVPCFALSKNDAYLFSA--S-GGVISLYIVMTFK----------------TILTIMPPSPTATSLAFNPHDNN  857 (1103)
Q Consensus       797 ~~~~~~~~v~~l~~s~d~~~l~~~--~-dg~i~iwd~~~~~----------------~~~~~~~~~~~i~~l~~s~~d~~  857 (1103)
                          .  +...+++++  .+++++  + +|.|++||+.+++                .+..+.+|...|++++|+| +++
T Consensus       138 ----~--~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~  208 (355)
T 3vu4_A          138 ----R--FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSD  208 (355)
T ss_dssp             ----E--EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECT-TSS
T ss_pred             ----c--CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECC-CCC
Confidence                1  334566777  666664  3 7999999998765                2678899999999999999 899


Q ss_pred             EEEEEeCCCe-EEEEEcCCceeEEEec-c-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeec------
Q 001310          858 VIAIGMDDST-ILIYNARSSEVISKLE-G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT------  928 (1103)
Q Consensus       858 ~lasg~~dg~-v~iwd~~~~~~~~~l~-~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~------  928 (1103)
                      +||+|+.||+ |++||+.+++++..+. + |.+.|.+++|+|||++|++++.|++|++||+..+.......+..      
T Consensus       209 ~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~  288 (355)
T 3vu4_A          209 MVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKY  288 (355)
T ss_dssp             EEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCC
T ss_pred             EEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccc
Confidence            9999999998 9999999999999998 6 99999999999999999999999999999998754322111110      


Q ss_pred             ------------CCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC
Q 001310          929 ------------PDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE  966 (1103)
Q Consensus       929 ------------~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~  966 (1103)
                                  ....   ......++|++||++|+++ .||.+++|++..
T Consensus       289 ~~~~~~~~~~~~~~~~---~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~  336 (355)
T 3vu4_A          289 FQSEWSLCNFKLSVDK---HVRGCKIAWISESSLVVVWPHTRMIETFKVVF  336 (355)
T ss_dssp             CCCSSCSEEEECCCCT---TCCCCEEEESSSSEEEEEETTTTEEEEEEEEE
T ss_pred             cccccceeEEEeccCC---CCCceEEEEeCCCCEEEEEeCCCeEEEEEEEc
Confidence                        1110   1134779999999999996 899999998754

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.96  E-value=1.2e-28  Score=303.74  Aligned_cols=255  Identities=17%  Similarity=0.300  Sum_probs=215.1

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecC--CCceEEEEEcCCCceE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP--CKQISVITCGDDKTIK  468 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d--~~~~~l~s~~~d~~i~  468 (1103)
                      ++.+|.+.|++++|+|+|++|++|+.||+|+|||+.++. ......+.+|.+.|.+++|+|+  ++  ++++|+.||.|+
T Consensus         4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-~~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~   80 (753)
T 3jro_A            4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-HKLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL   80 (753)
T ss_dssp             ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-EEEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred             ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-CccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence            377899999999999999999999999999999998532 2333478899999999999988  77  899999999999


Q ss_pred             EEeCCCCc--eeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEcc-----
Q 001310          469 VWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSA-----  539 (1103)
Q Consensus       469 iwd~~~~~--~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~-----  539 (1103)
                      +||+.+++  .+..+.+|...|.+++|++..++..+++++.||.|++||+....  ....+..+...|.+++|+|     
T Consensus        81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~  160 (753)
T 3jro_A           81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  160 (753)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred             EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence            99999987  77888899999999999876447899999999999999998873  4456677888999999999     


Q ss_pred             --------CCCEEEEEecCCCCceeEEEEeCCCC----eeEEEEecccccCCceEEEEEcCC---CCEEEEEeCCCcEEE
Q 001310          540 --------NGRRLFSCGTSKEGESFLVEWNESEG----AIKRTYQGLQLQHNSVSVVHFDTA---KDQILAAGDDHVIKI  604 (1103)
Q Consensus       540 --------dg~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~i  604 (1103)
                              ++.++++++.    ++.|++||+.++    .....+.+|.   ..|.+++|+|+   ++++++++.||.|++
T Consensus       161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~---~~V~~l~~sp~~~~~~~l~s~s~Dg~I~i  233 (753)
T 3jro_A          161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHS---DWVRDVAWSPTVLLRSYLASVSQDRTCII  233 (753)
T ss_dssp             ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCS---SCEEEEEECCCCSSSEEEEEEESSSCEEE
T ss_pred             ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCC---CcEEEEEeccCCCCCCEEEEEecCCEEEE
Confidence                    5899999986    566999999877    4556667766   89999999999   899999999999999


Q ss_pred             EECCCCeeE---EEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310          605 WDMNKVQLL---TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1103)
Q Consensus       605 wd~~~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~  655 (1103)
                      ||+.+++..   .......+...|.+++|+|+|+++++++.||.|++|++..+.
T Consensus       234 wd~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~  287 (753)
T 3jro_A          234 WTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG  287 (753)
T ss_dssp             EEESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred             ecCCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence            999886421   112222344578999999999999999999999999998653

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=1.1e-26  Score=268.42  Aligned_cols=300  Identities=12%  Similarity=0.041  Sum_probs=231.6

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccce--EeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      ..+.+++|+|++.++++++.++.|++||+.+++......  .+.+|...|.+++|+++++  ++++++.|+.|++||+.+
T Consensus       123 ~~~~~~~~s~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~~~s~~~d~~v~~~d~~~  200 (433)
T 3bws_A          123 FQPKSVRFIDNTRLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNE--LWVSQMQANAVHVFDLKT  200 (433)
T ss_dssp             SCBCCCEESSSSEEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTE--EEEEEGGGTEEEEEETTT
T ss_pred             CCceEEEEeCCCeEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCE--EEEEECCCCEEEEEECCC
Confidence            456699999988888888888999999999887553211  2457888999999999998  899999999999999999


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEE-EEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC-
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE-  552 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~-  552 (1103)
                      ++.+..+..|...+.+++|++  ++..+ ++++.|+.|++||+.+++....+.. ...+.+++|+|+|+++++++.... 
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~~g~~l~~~~~~~~~  277 (433)
T 3bws_A          201 LAYKATVDLTGKWSKILLYDP--IRDLVYCSNWISEDISVIDRKTKLEIRKTDK-IGLPRGLLLSKDGKELYIAQFSASN  277 (433)
T ss_dssp             CCEEEEEECSSSSEEEEEEET--TTTEEEEEETTTTEEEEEETTTTEEEEECCC-CSEEEEEEECTTSSEEEEEEEESCT
T ss_pred             ceEEEEEcCCCCCeeEEEEcC--CCCEEEEEecCCCcEEEEECCCCcEEEEecC-CCCceEEEEcCCCCEEEEEECCCCc
Confidence            999999999999999999965  55666 4555899999999998877666655 346899999999999998874321 


Q ss_pred             ---CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310          553 ---GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1103)
Q Consensus       553 ---~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1103)
                         .++.|++||+.+++.+..+. +.   ..+..++|+|+++.+ ++++.++.|++||+.+++.+..+...   ..+.++
T Consensus       278 ~~~~dg~i~~~d~~~~~~~~~~~-~~---~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~---~~~~~~  350 (433)
T 3bws_A          278 QESGGGRLGIYSMDKEKLIDTIG-PP---GNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVF---DKPNTI  350 (433)
T ss_dssp             TCSCCEEEEEEETTTTEEEEEEE-EE---ECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECS---SSEEEE
T ss_pred             cccCCCeEEEEECCCCcEEeecc-CC---CCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCC---CCCCeE
Confidence               36789999999998877653 23   478899999999866 45689999999999999988888643   347899


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1103)
Q Consensus       629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1103)
                      +|+|+|+++++++.+..                                                 .....++++++.||
T Consensus       351 ~~s~dg~~l~~~~~~~~-------------------------------------------------~~~~~~~~~g~~dg  381 (433)
T 3bws_A          351 ALSPDGKYLYVSCRGPN-------------------------------------------------HPTEGYLKKGLVLG  381 (433)
T ss_dssp             EECTTSSEEEEEECCCC-------------------------------------------------CTTTCTTSCCSSCC
T ss_pred             EEcCCCCEEEEEecCCC-------------------------------------------------ccccccccccccce
Confidence            99999999988876421                                                 01123445555556


Q ss_pred             ccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec-CceEEEeecC
Q 001310          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGVHLMWRWP  764 (1103)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~i~vw~~~  764 (1103)
                      .+++||....+.....    .   ....+.+++|+|+|+.+++++. ++.+++|+++
T Consensus       382 ~v~~~d~~~~~~~~~~----~---~~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~  431 (433)
T 3bws_A          382 KVYVIDTTTDTVKEFW----E---AGNQPTGLDVSPDNRYLVISDFLDHQIRVYRRD  431 (433)
T ss_dssp             EEEEEETTTTEEEEEE----E---CSSSEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred             EEEEEECCCCcEEEEe----c---CCCCCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence            6666655432211110    0   2346788999999999888875 8999999864

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.96  E-value=5.5e-27  Score=271.01  Aligned_cols=295  Identities=10%  Similarity=0.066  Sum_probs=240.9

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ..+..+..+. .+.+++|+|+++ ++++++.|+.|++||+.+++.+....              ...+.+|.+.|.+++|
T Consensus       114 ~~~~~~~~~~-~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~~~~~v~~~~~  177 (433)
T 3bws_A          114 RFISRFKTGF-QPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKKKLGFVETISI  177 (433)
T ss_dssp             EEEEEEECSS-CBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHTTCCEEEEEEE
T ss_pred             eEEEEEcCCC-CceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccccCCceeEEEE
Confidence            4455555554 677999999665 88999999999999999998765311              1125689999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      +|+++++++++.|+.|++||+.+++.+.   .+..|...+.+++|+|+++. ++++++.|+.|++||+.+++.+..+..+
T Consensus       178 ~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~  253 (433)
T 3bws_A          178 PEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKTKLEIRKTDKI  253 (433)
T ss_dssp             GGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTTTEEEEECCCC
T ss_pred             cCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCCCcEEEEecCC
Confidence            9999999999999999999999886554   56688999999999999984 3466778999999999999998888754


Q ss_pred             CCceEEEEeeecCCccEEEEEE--------CCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310          485 GAPVYSLCPHAKENIHFIFSIS--------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~--------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1103)
                       ..+.++++++  ++..+++++        .||.|++||+.+++..... .+...+.+++|+|+++.+++++.   .++.
T Consensus       254 -~~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~~~~---~~~~  326 (433)
T 3bws_A          254 -GLPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYVSDM---CCSK  326 (433)
T ss_dssp             -SEEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEEEET---TTTE
T ss_pred             -CCceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEEEec---CCCE
Confidence             4588888854  667888887        5899999999987665544 33447889999999987766542   2667


Q ss_pred             EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCeeEEEEcCCCC
Q 001310          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------------DHVIKIWDMNKVQLLTTIDAGGG  621 (1103)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~~~~~~~~~  621 (1103)
                      |++||+.+++.+..+.. .   ..+.+++|+|+++++++++.               ||.|++||..+++.+..+..+  
T Consensus       327 v~v~d~~~~~~~~~~~~-~---~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~~--  400 (433)
T 3bws_A          327 IEVYDLKEKKVQKSIPV-F---DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEAG--  400 (433)
T ss_dssp             EEEEETTTTEEEEEEEC-S---SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEECS--
T ss_pred             EEEEECCCCcEEEEecC-C---CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEecCC--
Confidence            99999999998887763 3   57899999999999988876               579999999999999888764  


Q ss_pred             CCCCceEEEecCCCEEEEEEC-CCeEEEEEcCC
Q 001310          622 LPENPRICFNKNGTLLAVIAN-ENRIKILETPE  653 (1103)
Q Consensus       622 ~~~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~~  653 (1103)
                       ..+.+++|+|+|++|++++. |+.|++|++..
T Consensus       401 -~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~  432 (433)
T 3bws_A          401 -NQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG  432 (433)
T ss_dssp             -SSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred             -CCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence             34789999999999998875 99999999763

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=1e-27  Score=275.80  Aligned_cols=256  Identities=16%  Similarity=0.251  Sum_probs=214.0

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCC----------CeeeeeeeeEeeccccccceeeeeccCCC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSG----------QKLFIRNFKVWDIGACSMLFKTALVRDPG  396 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~h~  396 (1103)
                      ...+.+|.+.|++++|+|++..++|+|+.||.|+|||+.+.          ..+.                   .+.+|.
T Consensus       121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~-------------------~~~~h~  181 (430)
T 2xyi_A          121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDL-------------------RLRGHQ  181 (430)
T ss_dssp             EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSE-------------------EEECCS
T ss_pred             EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcE-------------------EecCCC
Confidence            34567899999999999985458999999999999999862          2222                   266899


Q ss_pred             ccEEEEEECCCCC-EEEEEeCCCeEEEEEecCCCcc----ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDA----RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       397 ~~V~~~~~spdg~-~las~~~d~~i~iwd~~~~~~~----~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      ..|.+++|+|++. +|++|+.||.|++||+.++...    .....+.+|...|.+++|+|++.. ++++++.|+.|++||
T Consensus       182 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d  260 (430)
T 2xyi_A          182 KEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWD  260 (430)
T ss_dssp             SCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEE
T ss_pred             CCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEE
Confidence            9999999999998 9999999999999999884321    223467789999999999995443 899999999999999


Q ss_pred             CCCC---ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-CCeeEEecCCCccEEEEEEccCCC-EEEE
Q 001310          472 AVTG---SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-LGARVDYDAPGLGCTRMAYSANGR-RLFS  546 (1103)
Q Consensus       472 ~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~~~~~i~~~~~s~dg~-~l~~  546 (1103)
                      +.++   +.+..+..|...|.+++|++.. ..++++|+.||.|++||++. ......+..+...|.+++|+|+++ ++++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s  339 (430)
T 2xyi_A          261 TRNNNTSKPSHTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILAS  339 (430)
T ss_dssp             TTCSCSSSCSEEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEE
T ss_pred             CCCCCCCcceeEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEE
Confidence            9987   5778888999999999997642 24799999999999999998 455678888999999999999996 5777


Q ss_pred             EecCCCCceeEEEEeCCC--------------CeeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEECCCC
Q 001310          547 CGTSKEGESFLVEWNESE--------------GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWDMNKV  610 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~--------------~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~  610 (1103)
                      ++.    ++.|++||+..              .+.+..+.+|.   ..|.+++|+|+++ .+++++.||.|++|++...
T Consensus       340 ~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          340 SGT----DRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHT---AKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EET----TSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCS---SCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EeC----CCcEEEEeCCCCccccCccccccCCcceEEEcCCCC---CCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            765    56799999987              25556666665   8899999999999 8899999999999998754

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.96  E-value=9.9e-27  Score=267.52  Aligned_cols=256  Identities=16%  Similarity=0.311  Sum_probs=214.6

Q ss_pred             eeeeccCCCccEEEEEECCC-CCEEEEEeCCCeEEEEEecCC-------CccccceEeccccccEEEEEEecCCCceEEE
Q 001310          388 KTALVRDPGVSVNRVVWSPD-GSLLGVAYSKHIVQLYAYHGG-------SDARQQLEIDAHVGNVNDLAFSAPCKQISVI  459 (1103)
Q Consensus       388 ~~~~~~~h~~~V~~~~~spd-g~~las~~~d~~i~iwd~~~~-------~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~  459 (1103)
                      ......+|.+.|++++|+|+ +.+||+++.+|.|++||+.+.       ........+.+|...|.+++|+|++.. +|+
T Consensus       120 ~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~  198 (430)
T 2xyi_A          120 EIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLL  198 (430)
T ss_dssp             EEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEE
T ss_pred             EEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEE
Confidence            33346679999999999997 789999999999999999872       112344578899999999999999876 699


Q ss_pred             EEcCCCceEEEeCCCCce-------eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCC---CeeEEecCCC
Q 001310          460 TCGDDKTIKVWDAVTGSR-------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSL---GARVDYDAPG  529 (1103)
Q Consensus       460 s~~~d~~i~iwd~~~~~~-------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~~~  529 (1103)
                      +|+.||.|++||+.++..       ...+.+|...|.+++|++. ++.++++++.||.|++||+++.   .....+..+.
T Consensus       199 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~  277 (430)
T 2xyi_A          199 SASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHT  277 (430)
T ss_dssp             EECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCS
T ss_pred             EEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCC
Confidence            999999999999987432       4667789999999999764 4579999999999999999987   4566777888


Q ss_pred             ccEEEEEEccCCC-EEEEEecCCCCceeEEEEeCCC-CeeEEEEecccccCCceEEEEEcCCCC-EEEEEeCCCcEEEEE
Q 001310          530 LGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNESE-GAIKRTYQGLQLQHNSVSVVHFDTAKD-QILAAGDDHVIKIWD  606 (1103)
Q Consensus       530 ~~i~~~~~s~dg~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd  606 (1103)
                      ..|.+++|+|++. .+++++.    ++.|++||+++ +..+..+..|.   ..|.+++|+|+++ .+++++.||.|++||
T Consensus       278 ~~v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~---~~v~~i~~sp~~~~~l~s~~~d~~i~iwd  350 (430)
T 2xyi_A          278 AEVNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHK---DEIFQVQWSPHNETILASSGTDRRLHVWD  350 (430)
T ss_dssp             SCEEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCS---SCEEEEEECSSCTTEEEEEETTSCCEEEE
T ss_pred             CCeEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCC---CCEEEEEECCCCCCEEEEEeCCCcEEEEe
Confidence            9999999999998 5667765    66799999998 56778888877   8999999999985 588899999999999


Q ss_pred             CCC--------------CeeEEEEcCCCCCCCCceEEEecCCC-EEEEEECCCeEEEEEcCCC
Q 001310          607 MNK--------------VQLLTTIDAGGGLPENPRICFNKNGT-LLAVIANENRIKILETPES  654 (1103)
Q Consensus       607 ~~~--------------~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~dg~i~iw~~~~~  654 (1103)
                      +..              .+.+..+..|  ...|.+++|+|+++ ++++++.||.|++|++...
T Consensus       351 ~~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          351 LSKIGEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             GGGTTCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             CCCCccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            987              2455555544  45699999999999 9999999999999998754

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.96  E-value=7.7e-27  Score=270.51  Aligned_cols=265  Identities=15%  Similarity=0.091  Sum_probs=219.5

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEec--------------------------------------
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID--------------------------------------  438 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~--------------------------------------  438 (1103)
                      .++.+++|+|||++|+++ .++.|++||+.+|+.......+.                                      
T Consensus         5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (450)
T 2vdu_B            5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS   83 (450)
T ss_dssp             CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred             ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence            478899999999977666 57789999999987211111222                                      


Q ss_pred             ----------------cccccEEEEEEecCCCceE-EEEEcCCCceEEEeCC--CCceeEEee--cCCCceEEEEeeecC
Q 001310          439 ----------------AHVGNVNDLAFSAPCKQIS-VITCGDDKTIKVWDAV--TGSRTYSFE--GHGAPVYSLCPHAKE  497 (1103)
Q Consensus       439 ----------------~h~~~v~~~~~s~d~~~~~-l~s~~~d~~i~iwd~~--~~~~~~~~~--~~~~~v~~~~~~~~~  497 (1103)
                                      +|...|.+++|+|+++  + +++++.|+.|++||+.  +++.+..+.  .|...|.+++|++  
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--  159 (450)
T 2vdu_B           84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDES--RLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--  159 (450)
T ss_dssp             ----------------CCCCCEEEEEECTTSS--EEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--
T ss_pred             ccccCccccCCCCCCCccCCceEEEEEcCCCC--EEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--
Confidence                            3444799999999999  5 4899999999999999  888888886  5678999999965  


Q ss_pred             CccEEEEEECCCeEEEEEcCCCCeeE----EecCCCccEEEEEEccC---CCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310          498 NIHFIFSISVDGKIKAWLYDSLGARV----DYDAPGLGCTRMAYSAN---GRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1103)
Q Consensus       498 ~~~~l~s~~~dg~i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~d---g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1103)
                      ++.+|++++.+|.+++|++.+.....    .+..+...|.+++|+|+   +++|++++.    ++.|++||+.+++.+..
T Consensus       160 ~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~  235 (450)
T 2vdu_B          160 DDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDK  235 (450)
T ss_dssp             TSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEE
T ss_pred             CCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeee
Confidence            67899999999999999998776543    56678889999999999   999999986    55699999999988877


Q ss_pred             -EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-----------------------CCCCCCc
Q 001310          571 -YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-----------------------GGLPENP  626 (1103)
Q Consensus       571 -~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~  626 (1103)
                       +.+|.   ..|.+++|+ ++++|++++.|+.|++||+.+++.+..+..+                       .....+.
T Consensus       236 ~~~~h~---~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  311 (450)
T 2vdu_B          236 WLFGHK---HFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVS  311 (450)
T ss_dssp             ECCCCS---SCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEE
T ss_pred             eecCCC---CceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEE
Confidence             44666   899999999 9999999999999999999999988887632                       1123578


Q ss_pred             eEEEecCCCEEEEEE-CCCeEEEEEc--CCC---CeeEeccccccceeeeEEecC
Q 001310          627 RICFNKNGTLLAVIA-NENRIKILET--PES---NSVDAAGVLSDNLRKLSVNPI  675 (1103)
Q Consensus       627 ~v~~s~~g~~l~~~~-~dg~i~iw~~--~~~---~~~~~~~~~~~~i~~~~~~~~  675 (1103)
                      .++|+|+++++++++ .++.|++|++  ..+   ..+..+..+ ..+.+++++|.
T Consensus       312 ~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~-~~v~~~~~~~~  365 (450)
T 2vdu_B          312 KIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP-YNVISLSAHND  365 (450)
T ss_dssp             EEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS-SCEEEEEEETT
T ss_pred             EEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC-CceEEEEecCC
Confidence            999999999999999 8999999999  555   556666666 78889999863

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.96  E-value=3.3e-26  Score=268.38  Aligned_cols=343  Identities=9%  Similarity=0.087  Sum_probs=257.4

Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC--CCCeeE
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM--NKVQLL  613 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~--~~~~~~  613 (1103)
                      +++|++..++++..    ++.|.+||..+++.+..+....    .+..++|+|+++++++++.|++|++||+  .+++.+
T Consensus       144 ~~~p~~~~~vs~~~----d~~V~v~D~~t~~~~~~i~~g~----~~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~  215 (543)
T 1nir_A          144 DLDLPNLFSVTLRD----AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKV  215 (543)
T ss_dssp             CCCGGGEEEEEEGG----GTEEEEEETTTCCEEEEEECST----TEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEE
T ss_pred             ccCCCCEEEEEEcC----CCeEEEEECCCceEEEEEecCc----ccceEEECCCCCEEEEECCCCeEEEEECcCCCCcEE
Confidence            37888877777654    6679999999999999988544    3889999999999999999999999999  889988


Q ss_pred             EEEcCCCCCCCCceEEEec----CCCEEEEEEC-CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCce
Q 001310          614 TTIDAGGGLPENPRICFNK----NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSV  688 (1103)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~----~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~  688 (1103)
                      ..+...   ..+..++|+|    ||+++++++. +++|.+||..+++.+..+..+...+....+.               
T Consensus       216 ~~i~~g---~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~---------------  277 (543)
T 1nir_A          216 AEIKIG---IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH---------------  277 (543)
T ss_dssp             EEEECC---SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE---------------
T ss_pred             EEEecC---CCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccc---------------
Confidence            888743   2368999999    9999999885 8999999999887776554211100000000               


Q ss_pred             EecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEE-eecCceEEEeecCCCc
Q 001310          689 SVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA-LASNGVHLMWRWPRND  767 (1103)
Q Consensus       689 ~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~-~~~dg~i~vw~~~~~~  767 (1103)
                                                                  ....+.++.++|++..+++ ...++.|.+||+....
T Consensus       278 --------------------------------------------~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~  313 (543)
T 1nir_A          278 --------------------------------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID  313 (543)
T ss_dssp             --------------------------------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSS
T ss_pred             --------------------------------------------cCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCC
Confidence                                                        1236788999998776554 4557999999875432


Q ss_pred             cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecC----
Q 001310          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP----  841 (1103)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~----  841 (1103)
                      .                      +....+   .+...+..++|+|||+++++++  +++|.+||..+++++..+..    
T Consensus       314 ~----------------------l~~~~i---~~~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p  368 (543)
T 1nir_A          314 N----------------------LTVTSI---GAAPFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP  368 (543)
T ss_dssp             S----------------------CEEEEE---ECCSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred             c----------------------ceeEEe---ccCcCccCceECCCCCEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence            1                      110001   1345577899999999877664  68999999999999888764    


Q ss_pred             CCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEEcCC-------ceeEEEeccCCCCEEEEEEccCCCEEEEEe-------C
Q 001310          842 PSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSG-------G  906 (1103)
Q Consensus       842 ~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-------~  906 (1103)
                      |.+....+ ++|+++.+++++. .|++|.+||+.+       +++++++.+|.+.+..++|+|||++|++++       .
T Consensus       369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~  447 (543)
T 1nir_A          369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARI  447 (543)
T ss_dssp             CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCCEEEECCTTCSSHHH
T ss_pred             CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCCCceEEEcCCCCCcEEEecCCCCCccc
Confidence            44433333 5774577788775 689999999998       899999999998899999999999999987       2


Q ss_pred             CCeEEEEEcCCCcee-eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE------eCCeEEEEECCCceEEEEee
Q 001310          907 DAQIFVWDVDGWGIQ-TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWF  974 (1103)
Q Consensus       907 dg~I~iwd~~~~~~~-~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~------~d~~v~iwd~~~~~~~~~~~  974 (1103)
                      +++|.+||+.+++.. ....+....+.......+..+.|+|||+.|.++      .++.|.|||..+++++..+.
T Consensus       448 ~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          448 SQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             HTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence            779999999998754 211121100111112368999999999999975      26899999999999998744

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=3e-27  Score=263.12  Aligned_cols=235  Identities=13%  Similarity=0.083  Sum_probs=180.7

Q ss_pred             EEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec--CCCEEEEEc-CCeE
Q 001310          749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK--NDAYLFSAS-GGVI  825 (1103)
Q Consensus       749 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~--d~~~l~~~~-dg~i  825 (1103)
                      +++++.|+.+++|+...             .+.+|+..++..+.....   +|...|.+++++|  +++++++++ |++|
T Consensus        88 ~~s~s~D~~i~~w~~~~-------------~~~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~l~s~s~dg~i  151 (343)
T 3lrv_A           88 IISRGPCNRLLLLYPGN-------------QITILDSKTNKVLREIEV---DSANEIIYMYGHNEVNTEYFIWADNRGTI  151 (343)
T ss_dssp             EEEECSTTEEEEEETTT-------------EEEEEETTTCCEEEEEEC---CCSSCEEEEECCC---CCEEEEEETTCCE
T ss_pred             eEEecCCCeEEEEEccC-------------ceEEeecCCcceeEEeec---CCCCCEEEEEcCCCCCCCEEEEEeCCCcE
Confidence            66667777777776543             244566666664444333   3778999999999  999999887 8999


Q ss_pred             EEEEcCCceeeEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE-EEecc-CCCCEEEEEEccCCCEEE
Q 001310          826 SLYIVMTFKTILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI-SKLEG-HSKRVTGLVFSDALNILV  902 (1103)
Q Consensus       826 ~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~-~~l~~-h~~~V~~l~~s~dg~~l~  902 (1103)
                      ++||+.+++....... +...+++++|+| ++.+|++|+.||.|++||+.+++.+ ..+.+ |.+.|.+++|+|+|.+|+
T Consensus       152 ~~wd~~~~~~~~~~~~~~~~~i~~~~~~p-dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~  230 (343)
T 3lrv_A          152 GFQSYEDDSQYIVHSAKSDVEYSSGVLHK-DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMV  230 (343)
T ss_dssp             EEEESSSSCEEEEECCCSSCCCCEEEECT-TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEE
T ss_pred             EEEECCCCcEEEEEecCCCCceEEEEECC-CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEE
Confidence            9999999998777644 455899999999 8999999999999999999999887 88888 999999999999999999


Q ss_pred             EEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCc--eEEEEcCCCCEEEEE-e-CCeEEEEECCCceEEEEeeCCCC
Q 001310          903 SSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE--THIQFHKDQTRFLLV-H-ETHLAIYEAEELTCLKQWFPISS  978 (1103)
Q Consensus       903 s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v--~~l~fs~dg~~l~~~-~-d~~v~iwd~~~~~~~~~~~~~h~  978 (1103)
                      +++ |+.|++||+..++...  .+.....+..   .+  .+++|+|+|++|+++ . |+.+++|++.++......     
T Consensus       231 s~~-~~~v~iwd~~~~~~~~--~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~-----  299 (343)
T 3lrv_A          231 VEC-DQTVVCFDLRKDVGTL--AYPTYTIPEF---KTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK-----  299 (343)
T ss_dssp             EEE-SSBEEEEETTSSTTCB--SSCCCBC--------CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE-----
T ss_pred             EEe-CCeEEEEEcCCCCcce--eecccccccc---cccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe-----
Confidence            999 5599999999865322  1221111111   23  469999999999995 4 899999999766544332     


Q ss_pred             cCeEEEEEcc---CCCEEEEEecCCcEEEEeCCCce
Q 001310          979 VPISQATFSC---DCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       979 ~~v~~l~fs~---dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      .++..++|++   +++.+++++.||.+.++-.....
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~~~  335 (343)
T 3lrv_A          300 DEESALCLQSDTADFTDMDVVCGDGGIAAILKTNDS  335 (343)
T ss_dssp             EEEEECCC----CCCCEEEEEEETTEEEEEEECSSE
T ss_pred             cCceeEecCccccccceeEEEecCCceEEEEecCCe
Confidence            4677888998   89999999999999988655443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.96  E-value=9.1e-28  Score=267.31  Aligned_cols=271  Identities=10%  Similarity=0.057  Sum_probs=212.6

Q ss_pred             EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCe
Q 001310          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1103)
Q Consensus       340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~  419 (1103)
                      ..+.+|+. ++++|+.||+|++||+.+++.+....                     ...|.+++|+|+   +++++.|++
T Consensus        42 ~~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~~~---------------------~~~v~~~~~~~~---~~s~s~D~~   96 (343)
T 3lrv_A           42 KSMYYDKW-VCMCRCEDGALHFTQLKDSKTITTIT---------------------TPNPRTGGEHPA---IISRGPCNR   96 (343)
T ss_dssp             SSSSEEEE-EEEEEEETTEEEEEEESSSSCEEEEE---------------------EECCCTTCCCCS---EEEECSTTE
T ss_pred             hhhcCCCC-EEEEECCCCcEEEEECCCCcEEEEEe---------------------cCCceeeeeCCc---eEEecCCCe
Confidence            34556776 79999999999999999998776421                     356778889988   999999999


Q ss_pred             EEEEEec---------CCCccccceEeccccccEEEEEEec--CCCceEEEEEcCCCceEEEeCCCCceeEEeec-CCCc
Q 001310          420 VQLYAYH---------GGSDARQQLEIDAHVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAP  487 (1103)
Q Consensus       420 i~iwd~~---------~~~~~~~~~~l~~h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~  487 (1103)
                      |++|+..         +++.+..  ...+|...|.+++|+|  +++  ++++++.|++|++||+.+++++..... |...
T Consensus        97 i~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~  172 (343)
T 3lrv_A           97 LLLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVE  172 (343)
T ss_dssp             EEEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCC
T ss_pred             EEEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCc
Confidence            9999765         3322221  1236778999999999  998  899999999999999999999776644 5568


Q ss_pred             eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee-EEecC-CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          488 VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDA-PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~-~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      |.+++|+|  ++.+|++|+.||.|++||+++++.. ..+.. |..+|.+++|+|+|.+|++++.    + .|++||++++
T Consensus       173 i~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~~----~-~v~iwd~~~~  245 (343)
T 3lrv_A          173 YSSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVECD----Q-TVVCFDLRKD  245 (343)
T ss_dssp             CCEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEES----S-BEEEEETTSS
T ss_pred             eEEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEeC----C-eEEEEEcCCC
Confidence            99999965  7789999999999999999998877 67777 8899999999999999999973    2 6999999998


Q ss_pred             eeEEEEecccccCCce--EEEEEcCCCCEEEEEeC-CCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec---CCCEEEE
Q 001310          566 AIKRTYQGLQLQHNSV--SVVHFDTAKDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK---NGTLLAV  639 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~g~~l~~  639 (1103)
                      +.+..+..+..+...+  .+++|+|+++++++++. |+.|++|++.........      ..+..++|++   +.+.+++
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~  319 (343)
T 3lrv_A          246 VGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDV  319 (343)
T ss_dssp             TTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEE
T ss_pred             CcceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEE
Confidence            7766555422112333  46999999999999988 999999999765433222      1245677777   8889999


Q ss_pred             EECCCeEEEEEcC
Q 001310          640 IANENRIKILETP  652 (1103)
Q Consensus       640 ~~~dg~i~iw~~~  652 (1103)
                      ++.|+.+.++-..
T Consensus       320 ~~~d~~~~~~~~~  332 (343)
T 3lrv_A          320 VCGDGGIAAILKT  332 (343)
T ss_dssp             EEETTEEEEEEEC
T ss_pred             EecCCceEEEEec
Confidence            9999999887543

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.95  E-value=7.7e-26  Score=265.29  Aligned_cols=330  Identities=13%  Similarity=0.148  Sum_probs=247.7

Q ss_pred             EcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEc--CCCCeeEecccc
Q 001310          586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILET--PESNSVDAAGVL  663 (1103)
Q Consensus       586 ~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~--~~~~~~~~~~~~  663 (1103)
                      ++|++..+++++.|++|.+||..+++.+.++.....   +..++|+|||++|++++.|+.|.+||+  .+++.+..+.  
T Consensus       145 ~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~---~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~--  219 (543)
T 1nir_A          145 LDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA---VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIK--  219 (543)
T ss_dssp             CCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT---EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEE--
T ss_pred             cCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc---cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEe--
Confidence            788888888899999999999999999999874322   678999999999999999999999999  5554333221  


Q ss_pred             ccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEe
Q 001310          664 SDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN  743 (1103)
Q Consensus       664 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s  743 (1103)
                                                                                           +...+..++|+
T Consensus       220 ---------------------------------------------------------------------~g~~p~~va~s  230 (543)
T 1nir_A          220 ---------------------------------------------------------------------IGIEARSVESS  230 (543)
T ss_dssp             ---------------------------------------------------------------------CCSEEEEEEEC
T ss_pred             ---------------------------------------------------------------------cCCCcceEEeC
Confidence                                                                                 12346788999


Q ss_pred             c----CCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCC-------CCCCCCeeEEEEe
Q 001310          744 N----GGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD-------SNSQEAVPCFALS  811 (1103)
Q Consensus       744 ~----~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~l~~s  811 (1103)
                      |    ||+++++++. ++.+.+||....+.                      +.......       ......+.+++++
T Consensus       231 p~~~~dg~~l~v~~~~~~~v~v~D~~t~~~----------------------~~~i~~~g~~~~~~~~~~~~~v~~i~~s  288 (543)
T 1nir_A          231 KFKGYEDRYTIAGAYWPPQFAIMDGETLEP----------------------KQIVSTRGMTVDTQTYHPEPRVAAIIAS  288 (543)
T ss_dssp             CSTTCTTTEEEEEEEESSEEEEEETTTCCE----------------------EEEEECCEECSSSCCEESCCCEEEEEEC
T ss_pred             CCcCCCCCEEEEEEccCCeEEEEecccccc----------------------ceeecccCcccCccccccCCceEEEEEC
Confidence            9    9999988875 78999988654321                      11111100       0023478899999


Q ss_pred             cCCCEEEEEc--CCeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEE-EeCCCeEEEEEcCCceeEEEecc--
Q 001310          812 KNDAYLFSAS--GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEG--  884 (1103)
Q Consensus       812 ~d~~~l~~~~--dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~~~~~~~~l~~--  884 (1103)
                      |++..+++..  +++|.+||+.+.+.+.  .+. +...+..++|+| +++++++ +..+++|.+||+.+++++..+..  
T Consensus       289 ~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~-~~~~~~~~~~sp-dg~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~  366 (543)
T 1nir_A          289 HEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG-AAPFLHDGGWDS-SHRYFMTAANNSNKVAVIDSKDRRLSALVDVGK  366 (543)
T ss_dssp             SSSSEEEEEETTTTEEEEEECTTSSSCEEEEEE-CCSSCCCEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSS
T ss_pred             CCCCEEEEEECCCCeEEEEEecCCCcceeEEec-cCcCccCceECC-CCCEEEEEecCCCeEEEEECCCCeEEEeeccCC
Confidence            9887666554  6899999998866544  443 556788999999 7886655 45688999999999999888874  


Q ss_pred             --CCCCEEEEEEccC-CCEEEEEe-CCCeEEEEEcCCCce--eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe---
Q 001310          885 --HSKRVTGLVFSDA-LNILVSSG-GDAQIFVWDVDGWGI--QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH---  955 (1103)
Q Consensus       885 --h~~~V~~l~~s~d-g~~l~s~s-~dg~I~iwd~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~---  955 (1103)
                        |.+....+ ++|+ |..++++. .|++|.+||+++..-  ...++++...++..   .+..++|+|||++|.++.   
T Consensus       367 ~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~---~~~~v~~~pdg~~l~v~~~~~  442 (543)
T 1nir_A          367 TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG---GSLFIKTHPKSSHLYVDTTFN  442 (543)
T ss_dssp             SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS---CCCCEECCTTCCEEEECCTTC
T ss_pred             CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC---CceEEEcCCCCCcEEEecCCC
Confidence              65544443 4677 66777775 689999999988210  00123344443332   577899999999999964   


Q ss_pred             -----CCeEEEEECCCceEEEEee--------CCCCcCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCceeEEeec
Q 001310          956 -----ETHLAIYEAEELTCLKQWF--------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       956 -----d~~v~iwd~~~~~~~~~~~--------~~h~~~v~~l~fs~dg~~l~t~~-----~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                           +++|.+||+.+++.....+        ..+...+..+.|++||+.|+++.     .|++|.|||..|++++.++.
T Consensus       443 ~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  522 (543)
T 1nir_A          443 PDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVK  522 (543)
T ss_dssp             SSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCEEEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             CCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCceEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEeec
Confidence                 6799999999998773322        35678999999999999988763     47999999999999998887

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.95  E-value=1.5e-27  Score=270.39  Aligned_cols=276  Identities=7%  Similarity=-0.022  Sum_probs=180.2

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC-
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-  406 (1103)
                      .....|...+....+++++. ++|+|+.|++|+|||+.+++......              ...+.||.+.|.+++|+| 
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~~--------------~~~~~gH~~~v~~v~~~p~  147 (393)
T 4gq1_A           83 YSENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQHV--------------LGGKSGHHNFVNDIDIADV  147 (393)
T ss_dssp             EECC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEEE--------------ECTTTSCSSCEEEEEEEEE
T ss_pred             ccccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceeee--------------ecccCCCCCceEEEEEccc
Confidence            44456666677777777876 79999999999999999887654311              123789999999999998 


Q ss_pred             -------CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          407 -------DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       407 -------dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                             ||++||+|+.|++|+|||+.++..+.   .+.+|...|.+++|+|++.. +|++++.|++|++||+.+++...
T Consensus       148 ~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~  223 (393)
T 4gq1_A          148 YSADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAE  223 (393)
T ss_dssp             ECTTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC---
T ss_pred             cccccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccc
Confidence                   89999999999999999998876444   56689999999999998864 79999999999999999998876


Q ss_pred             EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEc-cCCCEEEEEecCCCCceeEE
Q 001310          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYS-ANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      ....+.......++.....                   ..........+...+.++.|+ +|++.+++++.    ++.++
T Consensus       224 ~~~~~~~~~~~~~~s~~~~-------------------~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~  280 (393)
T 4gq1_A          224 ENSQTELVKNPWLLTLNTL-------------------PLVNTCHSSGIASSLANVRWIGSDGSGILAMCK----SGAWL  280 (393)
T ss_dssp             -------CSCCCSEEEESG-------------------GGC------CCSSSCSEEEEETTTTCEEEEECT----TSEEE
T ss_pred             cccccCCcccceEEecccc-------------------cceeeeecccccccceeeeeecCCCCEEEEEeC----CCCEE
Confidence            6654433322222211111                   011111223456677888886 79999999875    66799


Q ss_pred             EEeCCCCeeEEEEecccccCCceEEE------------------EEcC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310          559 EWNESEGAIKRTYQGLQLQHNSVSVV------------------HFDT--AKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~------------------~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                      +||+.++.....+..+.   ..+..+                  .++|  ++.++++|+.||+|++||..+++....+..
T Consensus       281 vwd~~~~~~~~~l~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~  357 (393)
T 4gq1_A          281 RWNLFANNDYNEISDST---MKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQ  357 (393)
T ss_dssp             EEEC----------------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEE
T ss_pred             EEECccCCCCceEeeec---CccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecC
Confidence            99999887766655443   222222                  2333  233556688999999999999988877765


Q ss_pred             CCCCCCCceEEEecCCCEEEEEECCCeEEEEEc
Q 001310          619 GGGLPENPRICFNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       619 ~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      +.  ..|.+++|+|||++||+++.+| +.+|.+
T Consensus       358 ~~--~~V~svafspdG~~LA~as~~G-v~lvrL  387 (393)
T 4gq1_A          358 LG--MPIVDFCWHQDGSHLAIATEGS-VLLTRL  387 (393)
T ss_dssp             CS--SCEEEEEECTTSSEEEEEESSE-EEEEEE
T ss_pred             CC--CcEEEEEEcCCCCEEEEEeCCC-eEEEEE
Confidence            53  4699999999999999999876 666654

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.94  E-value=5.1e-27  Score=265.99  Aligned_cols=322  Identities=13%  Similarity=0.073  Sum_probs=201.7

Q ss_pred             cCCCceEEEEEcCCCcEEEEECCCCCee-----eeeeeeEeeccccc-----cceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          343 HPVQHTLLLVGTNVGDTGLWDVNSGQKL-----FIRNFKVWDIGACS-----MLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       343 spdg~~llasgs~d~~v~iwd~~~~~~~-----~~~~~~~~~~~~~~-----~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      +|++..+++.| .|+.|.+|+.......     .......|+.....     ..........|...+....+++++.+||
T Consensus        27 ~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la  105 (393)
T 4gq1_A           27 SPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNVNSSPVYSLFLA  105 (393)
T ss_dssp             SGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC----------CCEEEEEEE
T ss_pred             CCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcceeecCCCCCEEE
Confidence            56665566666 4678999986432111     11111222211100     0011112334555666667777889999


Q ss_pred             EEeCCCeEEEEEecCCCccc--cceEeccccccEEEEEEec--------CCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310          413 VAYSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSA--------PCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       413 s~~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~v~~~~~s~--------d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  482 (1103)
                      +++.|++|+|||..+++...  ....+.+|.+.|++++|+|        |++  +|++++.|++|+|||+.++.++..+.
T Consensus       106 s~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd~~~~~~~~~~~  183 (393)
T 4gq1_A          106 CVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWRLTDEGPILAGY  183 (393)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEEEETTEEEEEEE
T ss_pred             EEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEECCCCceeeeec
Confidence            99999999999999886432  2224679999999999998        777  89999999999999999999998888


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      +|..+|.+++|+|. +..+|++++.||+|++||+.+++.......+.......+++++                     .
T Consensus       184 ~~~~~v~~v~~~p~-~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~---------------------~  241 (393)
T 4gq1_A          184 PLSSPGISVQFRPS-NPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLN---------------------T  241 (393)
T ss_dssp             ECSSCEEEEEEETT-EEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEE---------------------S
T ss_pred             CCCCCcEEEEECCC-CCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecc---------------------c
Confidence            99999999999764 3358999999999999999887665443322211111111110                     0


Q ss_pred             CCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC----------------CCCC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----------------LPEN  625 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----------------~~~v  625 (1103)
                      ..........+|.   ..+.++.|+ ++++.+++++.|+++++||+..++....+..+..                ....
T Consensus       242 ~~~~~~~~~~~~~---~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  318 (393)
T 4gq1_A          242 LPLVNTCHSSGIA---SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSL  318 (393)
T ss_dssp             GGGC------CCS---SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------------------CCSCSEEEECSSCCS
T ss_pred             ccceeeeeccccc---ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcc
Confidence            0000111223344   678888886 8999999999999999999988766555433211                0112


Q ss_pred             ceEEEec--CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310          626 PRICFNK--NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1103)
Q Consensus       626 ~~v~~s~--~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1103)
                      ....|+|  ++.++++|+.||.|++||..+++.......+...|.+++|+                      |||++|++
T Consensus       319 ~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~~V~svafs----------------------pdG~~LA~  376 (393)
T 4gq1_A          319 LGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGMPIVDFCWH----------------------QDGSHLAI  376 (393)
T ss_dssp             SCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEEECSSCEEEEEEC----------------------TTSSEEEE
T ss_pred             eeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEecCCCCcEEEEEEc----------------------CCCCEEEE
Confidence            2334444  44466778889999999999998888888899999999997                      78888888


Q ss_pred             eccccccccccc
Q 001310          704 VEAENKSEVEKP  715 (1103)
Q Consensus       704 ~~~d~~i~~w~~  715 (1103)
                      ++.+| +.+|.+
T Consensus       377 as~~G-v~lvrL  387 (393)
T 4gq1_A          377 ATEGS-VLLTRL  387 (393)
T ss_dssp             EESSE-EEEEEE
T ss_pred             EeCCC-eEEEEE
Confidence            87765 444443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.94  E-value=3.7e-25  Score=252.02  Aligned_cols=307  Identities=9%  Similarity=0.033  Sum_probs=240.9

Q ss_pred             CCcCceEEEecCCCceEEEEEc----CCC----cEEEEEC--CCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGT----NVG----DTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs----~d~----~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      +...|...+|++.|..++++|+    .||    +|+|||+  .+++++....                 +.+|...+..+
T Consensus        61 ~~~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~-----------------~~~~~~~~~~~  123 (415)
T 2hqs_A           61 SAQEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNS-----------------YKVNKQWLRYA  123 (415)
T ss_dssp             SGGGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEE-----------------EEECGGGHHHH
T ss_pred             cccCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeE-----------------EEcChhHHHHH
Confidence            3458889999999987888886    467    8999999  9998764322                 44677777777


Q ss_pred             EECC--------------CCCEEEEEeCC------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc
Q 001310          403 VWSP--------------DGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG  462 (1103)
Q Consensus       403 ~~sp--------------dg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~  462 (1103)
                      ++++              .+..+++++.+      +.|++||+.++. .+   .+.+|...|.+++|+|||+  .|++++
T Consensus       124 ~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s  197 (415)
T 2hqs_A          124 GHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVT  197 (415)
T ss_dssp             HHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEE
T ss_pred             HHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEE
Confidence            7664              26677777654      799999998543 33   5778999999999999999  788888


Q ss_pred             CCC---ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEE-EEECCCe--EEEEEcCCCCeeEEecCCCccEEEEE
Q 001310          463 DDK---TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMA  536 (1103)
Q Consensus       463 ~d~---~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~  536 (1103)
                      .|+   .|++||+.+++.. .+..|...+.+++|+|  +|..|+ +++.++.  |++||+.+++. ..+..+...+.+++
T Consensus       198 ~~~~~~~i~~~d~~tg~~~-~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~  273 (415)
T 2hqs_A          198 FESGRSALVIQTLANGAVR-QVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPT  273 (415)
T ss_dssp             CTTSSCEEEEEETTTCCEE-EEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEE
T ss_pred             ecCCCcEEEEEECCCCcEE-EeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceE
Confidence            775   9999999999875 5667888999999965  677777 6666655  99999988665 45666777899999


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---CcEEEEECCCCeeE
Q 001310          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---HVIKIWDMNKVQLL  613 (1103)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~  613 (1103)
                      |+|||++|++++.. ++...|++||+.+++.. .+..+.   ..+..++|+|+|++|++++.+   ..|++||+.+++..
T Consensus       274 ~spdg~~l~~~s~~-~g~~~i~~~d~~~~~~~-~l~~~~---~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~  348 (415)
T 2hqs_A          274 WFPDSQNLAFTSDQ-AGRPQVYKVNINGGAPQ-RITWEG---SQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ  348 (415)
T ss_dssp             ECTTSSEEEEEECT-TSSCEEEEEETTSSCCE-ECCCSS---SEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEE
T ss_pred             ECCCCCEEEEEECC-CCCcEEEEEECCCCCEE-EEecCC---CcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEE
Confidence            99999999988742 23457999999888743 333333   678899999999999987754   58999999988774


Q ss_pred             EEEcCCCCCCCCceEEEecCCCEEEEEECCC---eEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310          614 TTIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1103)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  676 (1103)
                       .+..+   ..+.+++|+|+|++|++++.++   .|++|++. +.....+..+...+.+++|+|..
T Consensus       349 -~l~~~---~~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~-g~~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          349 -VLSST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             -ECCCS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETT-SCCEEECCCSSSEEEEEEECCCC
T ss_pred             -EecCC---CCcCCeEEcCCCCEEEEEEcCCCccEEEEEECC-CCcEEEeeCCCCCCcCCcccccc
Confidence             34333   2588999999999999988877   79999987 45677788899999999999754

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.93  E-value=1.8e-23  Score=259.51  Aligned_cols=303  Identities=13%  Similarity=0.079  Sum_probs=213.3

Q ss_pred             CcCceEEEecCCCceEEEEEcC-CC-----cEEEEECCCCCeeeeeeeeEee-----ccccccceeeeeccCCCccEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTN-VG-----DTGLWDVNSGQKLFIRNFKVWD-----IGACSMLFKTALVRDPGVSVNRV  402 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~-d~-----~v~iwd~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~h~~~V~~~  402 (1103)
                      ...|.+++|||||++ |++++. |+     .|.+||+.+++...........     ++......+...-......|.++
T Consensus        36 ~~~~~~~~~SpdG~~-la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  114 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSR-VTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY  114 (741)
T ss_dssp             CCCCEEEEECTTSSE-EEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred             CCCCCCceEecCCCE-EEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence            347999999999994 677666 87     8999999998865432110000     00000000000000001348899


Q ss_pred             EECCCCCEEEEEeCCCeEEEEEecCCC--ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310          403 VWSPDGSLLGVAYSKHIVQLYAYHGGS--DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       403 ~~spdg~~las~~~d~~i~iwd~~~~~--~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  480 (1103)
                      +|||||++|++++. +.|++||+.++.  ...   .+..|...+.+++|||||+  .|+.++ ++.|++||+.+++....
T Consensus       115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~  187 (741)
T 2ecf_A          115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL  187 (741)
T ss_dssp             EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred             EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence            99999999999986 899999999872  222   3567888899999999999  677776 56899999999887665


Q ss_pred             eecCCCc----------------eEEEEeeecCCccEEEEEECCC---------------------------------eE
Q 001310          481 FEGHGAP----------------VYSLCPHAKENIHFIFSISVDG---------------------------------KI  511 (1103)
Q Consensus       481 ~~~~~~~----------------v~~~~~~~~~~~~~l~s~~~dg---------------------------------~i  511 (1103)
                      ...+...                +.+++|  ++||++|++++.|+                                 .|
T Consensus       188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~--SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          188 TADGSTTIGNGIAEFVADEEMDRHTGYWW--APDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             CCCCCSSEEESCCCHHHHHHSCCCCSEEE--CTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             ccCCccceeccccceeeeeccccccceEE--CCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            5444432                356677  55788898887765                                 78


Q ss_pred             EEEEcCC-CCeeEEec--CCCccEEEEEEccCCCEEEEEec-CCCCceeEEEEeCCCCeeEEEEecccccCC---ceEEE
Q 001310          512 KAWLYDS-LGARVDYD--APGLGCTRMAYSANGRRLFSCGT-SKEGESFLVEWNESEGAIKRTYQGLQLQHN---SVSVV  584 (1103)
Q Consensus       512 ~iwd~~~-~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~---~v~~~  584 (1103)
                      .+||+.+ ++......  .+...+..++| |||++|+++.. ....+..|++||+.+++....+..+.  ..   .+..+
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~~~  342 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETS--PTWVPLHNSL  342 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEEC--SSCCCCCSCC
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCC--CCcCCcCCce
Confidence            8899887 76554433  35568899999 99999997764 23346789999999998877776554  12   34678


Q ss_pred             EEcCCCCEEEEEeCCCcEEEEECC-CCeeEEEEcCCCCCCCCceE-EEecCCCEEEEEEC-CC--eEEEEEcC
Q 001310          585 HFDTAKDQILAAGDDHVIKIWDMN-KVQLLTTIDAGGGLPENPRI-CFNKNGTLLAVIAN-EN--RIKILETP  652 (1103)
Q Consensus       585 ~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~g~~l~~~~~-dg--~i~iw~~~  652 (1103)
                      +|+|||+.+++++.+|.+++|.+. ++. ...+..+  ...+..+ .|+|+|+.++..+. ++  .+++|++.
T Consensus       343 ~~spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~  412 (741)
T 2ecf_A          343 RFLDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVP  412 (741)
T ss_dssp             EECTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEE
T ss_pred             EECCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEE
Confidence            999999988888999988888765 344 5555443  2346666 59999998765544 44  78888875

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.92  E-value=1.2e-23  Score=239.61  Aligned_cols=305  Identities=13%  Similarity=0.111  Sum_probs=226.0

Q ss_pred             cccEEEEEEecCCCceEEEEEc----CCC----ceEEEeC--CCCcee--EEeecCCCceEEEEeeec------------
Q 001310          441 VGNVNDLAFSAPCKQISVITCG----DDK----TIKVWDA--VTGSRT--YSFEGHGAPVYSLCPHAK------------  496 (1103)
Q Consensus       441 ~~~v~~~~~s~d~~~~~l~s~~----~d~----~i~iwd~--~~~~~~--~~~~~~~~~v~~~~~~~~------------  496 (1103)
                      ...+...+|.+.|.. ++++|+    .||    +|++||+  .+++++  ..+.+|...+..+++.+.            
T Consensus        62 ~~~~~~~~w~~~g~~-~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~  140 (415)
T 2hqs_A           62 AQEVQPAAWSALGID-AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKG  140 (415)
T ss_dssp             GGGCCHHHHHTTTCC-EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCC
T ss_pred             ccCcCHHHHHhcCCC-EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCC
Confidence            356778889999886 666775    567    8999999  999988  458889888887776532            


Q ss_pred             CCccEEEEEECC------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310          497 ENIHFIFSISVD------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1103)
Q Consensus       497 ~~~~~l~s~~~d------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1103)
                      ..+..++.++.+      +.|++||++. .....+..+...+.+++|+|||++|++++.++ +...|++||+.+++.. .
T Consensus       141 ~~~~~l~~~s~~~~~~~~~~i~i~d~~g-~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~-~~~~i~~~d~~tg~~~-~  217 (415)
T 2hqs_A          141 AFRTRIAYVVQTNGGQFPYELRVSDYDG-YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFES-GRSALVIQTLANGAVR-Q  217 (415)
T ss_dssp             CTTCEEEEEEECSSSSCCEEEEEEETTS-CSCEEEEEESSCEEEEEECTTSSEEEEEECTT-SSCEEEEEETTTCCEE-E
T ss_pred             cCCCEEEEEEecCCCCccceEEEEcCCC-CCCEEEeCCCCcceeeEEcCCCCEEEEEEecC-CCcEEEEEECCCCcEE-E
Confidence            013466666654      7999999985 44556666778999999999999999988643 2468999999998875 4


Q ss_pred             EecccccCCceEEEEEcCCCCEEE-EEeCCCc--EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-CC--
Q 001310          571 YQGLQLQHNSVSVVHFDTAKDQIL-AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-EN--  644 (1103)
Q Consensus       571 ~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-dg--  644 (1103)
                      +..+.   ..+.+++|+|+|+.|+ +++.++.  |++||+.+++. ..+..+  ...+.+++|+|||++|++++. ++  
T Consensus       218 l~~~~---~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~--~~~~~~~~~spdg~~l~~~s~~~g~~  291 (415)
T 2hqs_A          218 VASFP---RHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDG--RSNNTEPTWFPDSQNLAFTSDQAGRP  291 (415)
T ss_dssp             EECCS---SCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCCC--SSCEEEEEECTTSSEEEEEECTTSSC
T ss_pred             eecCC---CcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcCC--CCcccceEECCCCCEEEEEECCCCCc
Confidence            55555   6899999999999888 5665554  99999998876 344433  345789999999999988876 34  


Q ss_pred             eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccce
Q 001310          645 RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQ  724 (1103)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~  724 (1103)
                      .|.+|++.+++... +.                                                               
T Consensus       292 ~i~~~d~~~~~~~~-l~---------------------------------------------------------------  307 (415)
T 2hqs_A          292 QVYKVNINGGAPQR-IT---------------------------------------------------------------  307 (415)
T ss_dssp             EEEEEETTSSCCEE-CC---------------------------------------------------------------
T ss_pred             EEEEEECCCCCEEE-Ee---------------------------------------------------------------
Confidence            45555655432100 00                                                               


Q ss_pred             eeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCC
Q 001310          725 SLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEA  804 (1103)
Q Consensus       725 ~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  804 (1103)
                                                                                                 .+...
T Consensus       308 ---------------------------------------------------------------------------~~~~~  312 (415)
T 2hqs_A          308 ---------------------------------------------------------------------------WEGSQ  312 (415)
T ss_dssp             ---------------------------------------------------------------------------CSSSE
T ss_pred             ---------------------------------------------------------------------------cCCCc
Confidence                                                                                       02234


Q ss_pred             eeEEEEecCCCEEEEEc-C---CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC---eEEEEEcCCce
Q 001310          805 VPCFALSKNDAYLFSAS-G---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS---TILIYNARSSE  877 (1103)
Q Consensus       805 v~~l~~s~d~~~l~~~~-d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg---~v~iwd~~~~~  877 (1103)
                      +.+++|+|||++|++++ +   ..|.+||+.+++. ..+..+. .+.+++|+| ++++|++++.++   .|++||+. +.
T Consensus       313 ~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~-~~l~~~~-~~~~~~~sp-dg~~l~~~s~~~~~~~l~~~d~~-g~  388 (415)
T 2hqs_A          313 NQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV-QVLSSTF-LDETPSLAP-NGTMVIYSSSQGMGSVLNLVSTD-GR  388 (415)
T ss_dssp             EEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE-EECCCSS-SCEEEEECT-TSSEEEEEEEETTEEEEEEEETT-SC
T ss_pred             ccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE-EEecCCC-CcCCeEEcC-CCCEEEEEEcCCCccEEEEEECC-CC
Confidence            45566677777666654 2   4688999988776 3455454 899999999 899998888777   89999987 56


Q ss_pred             eEEEeccCCCCEEEEEEccCC
Q 001310          878 VISKLEGHSKRVTGLVFSDAL  898 (1103)
Q Consensus       878 ~~~~l~~h~~~V~~l~~s~dg  898 (1103)
                      ....+.+|.+.|.+++|+|.-
T Consensus       389 ~~~~l~~~~~~v~~~~~~~~~  409 (415)
T 2hqs_A          389 FKARLPATDGQVKFPAWSPYL  409 (415)
T ss_dssp             CEEECCCSSSEEEEEEECCCC
T ss_pred             cEEEeeCCCCCCcCCcccccc
Confidence            678889999999999999964

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.91  E-value=1.4e-22  Score=251.46  Aligned_cols=331  Identities=11%  Similarity=0.014  Sum_probs=235.5

Q ss_pred             cccEEEEEEecCCCceEEEEEcC-CC-----ceEEEeCCCCceeEEeecCCC------------------------ceEE
Q 001310          441 VGNVNDLAFSAPCKQISVITCGD-DK-----TIKVWDAVTGSRTYSFEGHGA------------------------PVYS  490 (1103)
Q Consensus       441 ~~~v~~~~~s~d~~~~~l~s~~~-d~-----~i~iwd~~~~~~~~~~~~~~~------------------------~v~~  490 (1103)
                      ...+.+++|||||+  .|++++. |+     .|++||+.+++....+..+..                        .+.+
T Consensus        36 ~~~~~~~~~SpdG~--~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  113 (741)
T 2ecf_A           36 GPTLMKPKVAPDGS--RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVD  113 (741)
T ss_dssp             CCCCEEEEECTTSS--EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCC
T ss_pred             CCCCCCceEecCCC--EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcce
Confidence            44689999999999  7888887 88     899999999988777765433                        2677


Q ss_pred             EEeeecCCccEEEEEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      ++|  ++||++|++++. +.|.+||+.++.  ....+..+...+..++|||||++|++++.     +.|++||+.+++..
T Consensus       114 ~~~--SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~~-----~~i~~~d~~~g~~~  185 (741)
T 2ecf_A          114 YQW--SPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIRG-----RNLWVIDLASGRQM  185 (741)
T ss_dssp             CEE--CTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEET-----TEEEEEETTTTEEE
T ss_pred             eEE--CCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEeC-----CcEEEEecCCCCEE
Confidence            777  457889998886 999999998873  34445566678999999999999998863     36999999998876


Q ss_pred             EEEeccccc-------------CCceEEEEEcCCCCEEEEEeCCC---------------------------------cE
Q 001310          569 RTYQGLQLQ-------------HNSVSVVHFDTAKDQILAAGDDH---------------------------------VI  602 (1103)
Q Consensus       569 ~~~~~~~~~-------------~~~v~~~~~~~~~~~l~~~~~dg---------------------------------~i  602 (1103)
                      +....+...             ...+..++|+|||++|++++.|+                                 .|
T Consensus       186 ~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l  265 (741)
T 2ecf_A          186 QLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL  265 (741)
T ss_dssp             ECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred             EeccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence            554433200             01147799999999999987665                                 78


Q ss_pred             EEEECCC-CeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-----CCeEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310          603 KIWDMNK-VQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-----ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1103)
Q Consensus       603 ~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-----dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  676 (1103)
                      ++||+.+ ++.........+...+..++| |||++|++++.     +..|.+||..+++....+..+             
T Consensus       266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~-------------  331 (741)
T 2ecf_A          266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHET-------------  331 (741)
T ss_dssp             EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEE-------------
T ss_pred             EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcC-------------
Confidence            9999988 876554432123345788999 99999987764     455777776655322111100             


Q ss_pred             ceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCc
Q 001310          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG  756 (1103)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg  756 (1103)
                                                                                                   .+ 
T Consensus       332 -----------------------------------------------------------------------------~~-  333 (741)
T 2ecf_A          332 -----------------------------------------------------------------------------SP-  333 (741)
T ss_dssp             -----------------------------------------------------------------------------CS-
T ss_pred             -----------------------------------------------------------------------------CC-
Confidence                                                                                         00 


Q ss_pred             eEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcC-Cce
Q 001310          757 VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVM-TFK  834 (1103)
Q Consensus       757 ~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~-~~~  834 (1103)
                                                                 .....+..++|+|||+++++++ ++.++||.+. +++
T Consensus       334 -------------------------------------------~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~~~~~  370 (741)
T 2ecf_A          334 -------------------------------------------TWVPLHNSLRFLDDGSILWSSERTGFQHLYRIDSKGK  370 (741)
T ss_dssp             -------------------------------------------SCCCCCSCCEECTTSCEEEEECTTSSCEEEEECSSSC
T ss_pred             -------------------------------------------CcCCcCCceEECCCCeEEEEecCCCccEEEEEcCCCC
Confidence                                                       0001233456777777666665 4666666654 344


Q ss_pred             eeEEecCCCCCeeEE-EEcCCCCCEEE-EEeCCC--eEEEEEcCC-ceeEEEeccCCCCEEEEEEccCCCEEEEEeCC--
Q 001310          835 TILTIMPPSPTATSL-AFNPHDNNVIA-IGMDDS--TILIYNARS-SEVISKLEGHSKRVTGLVFSDALNILVSSGGD--  907 (1103)
Q Consensus       835 ~~~~~~~~~~~i~~l-~~s~~d~~~la-sg~~dg--~v~iwd~~~-~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d--  907 (1103)
                       ...+..+...+..+ +|+| +++.|+ +++.++  .++||++.. +.....+.. ...+..++|||||++|+....+  
T Consensus       371 -~~~l~~~~~~v~~~~~~s~-dg~~l~~~~~~~~~~~~~l~~~~~~g~~~~~l~~-~~~~~~~~~spdg~~l~~~~~~~~  447 (741)
T 2ecf_A          371 -AAALTHGNWSVDELLAVDE-KAGLAYFRAGIESARESQIYAVPLQGGQPQRLSK-APGMHSASFARNASVYVDSWSNNS  447 (741)
T ss_dssp             -EEESCCSSSCEEEEEEEET-TTTEEEEEECSSCTTCBEEEEEETTCCCCEECCC-SCSEEEEEECTTSSEEEEEEEETT
T ss_pred             -eeeeeecceEEEeEeEEeC-CCCEEEEEEeCCCCceEEEEEEEcCCCCeeeccc-CCCceEEEECCCCCEEEEEecCCC
Confidence             67777777788887 5999 776654 555555  899999874 555667765 6678999999999998876543  


Q ss_pred             --CeEEEEEcCCCc
Q 001310          908 --AQIFVWDVDGWG  919 (1103)
Q Consensus       908 --g~I~iwd~~~~~  919 (1103)
                        ..+.+|+...+.
T Consensus       448 ~p~~~~l~~~~~~~  461 (741)
T 2ecf_A          448 TPPQIELFRANGEK  461 (741)
T ss_dssp             EEEEEEEEETTSCE
T ss_pred             CCCeEEEEEcCCCe
Confidence              468999987643

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=2.6e-23  Score=257.35  Aligned_cols=312  Identities=9%  Similarity=0.084  Sum_probs=223.7

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc---cEEEEEECCCCCEEE
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLG  412 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~la  412 (1103)
                      .+.+++|||||+ ++++ +.||+|++||+.+++....                   +.+|..   .|.+++|||||++||
T Consensus        18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~~-------------------~~~~~~~~~~v~~~~~SpDg~~l~   76 (723)
T 1xfd_A           18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTVL-------------------IEGKKIESLRAIRYEISPDREYAL   76 (723)
T ss_dssp             CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEEE-------------------ECTTTTTTTTCSEEEECTTSSEEE
T ss_pred             cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEEE-------------------eccccccccccceEEECCCCCEEE
Confidence            578899999999 5666 6889999999999986543                   444554   499999999999999


Q ss_pred             EEeCC---------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          413 VAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       413 s~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      +++.+         +.|.+||+.+++. .......+|...+..++|||||+  .|+.++. +.|++||+.+++.......
T Consensus        77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~  152 (723)
T 1xfd_A           77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST  152 (723)
T ss_dssp             EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred             EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence            99764         7889999999874 22222335555689999999999  5777664 7999999999988776655


Q ss_pred             CCCce------------------EEEEeeecCCccEEEEEECCC----------------------------------eE
Q 001310          484 HGAPV------------------YSLCPHAKENIHFIFSISVDG----------------------------------KI  511 (1103)
Q Consensus       484 ~~~~v------------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i  511 (1103)
                      +...+                  .+++|  ++||+.|++++.|+                                  .|
T Consensus       153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~--SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l  230 (723)
T 1xfd_A          153 GKEGVIYNGLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL  230 (723)
T ss_dssp             CBTTTEEEEECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred             CCCCceECcccceeEEEEeccCcceEEE--CCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence            44333                  66777  55788898887553                                  79


Q ss_pred             EEEEcCCCCeeEEecCC------CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCce----
Q 001310          512 KAWLYDSLGARVDYDAP------GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----  581 (1103)
Q Consensus       512 ~iwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----  581 (1103)
                      ++||+.+++....+..+      ...+..++|+|||+++++.......+..|++||+.+++....+..+.  ...+    
T Consensus       231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~--~~~~~~~~  308 (723)
T 1xfd_A          231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQN  308 (723)
T ss_dssp             EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCC
T ss_pred             EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEecc--CCEEeccC
Confidence            99999888765555543      55789999999999987776554456789999999998877665432  1233    


Q ss_pred             EEEEEcCCCCEEEEE--eCCC------cEEEEE-CCCCee--EEEEcCCCCCCCCce-EEEecCCCEEEEEECC---CeE
Q 001310          582 SVVHFDTAKDQILAA--GDDH------VIKIWD-MNKVQL--LTTIDAGGGLPENPR-ICFNKNGTLLAVIANE---NRI  646 (1103)
Q Consensus       582 ~~~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~g~~l~~~~~d---g~i  646 (1103)
                      ..++|+|||+.|+..  ..++      .|++|| ..++..  ...+... . ..+.. ++|+|||+.|+..+.+   +.+
T Consensus       309 ~~~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~  386 (723)
T 1xfd_A          309 EEPVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG-D-WDVTKILAYDEKGNKIYFLSTEDLPRRR  386 (723)
T ss_dssp             CCCEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS-S-SCEEEEEEEETTTTEEEEEESSSCTTCC
T ss_pred             CCceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC-C-eEEEeeeEEcCCCCEEEEEEcCCCCcce
Confidence            378999999987764  4566      577778 344441  3333321 1 22333 6899999999877665   789


Q ss_pred             EEEEcCCCC--eeEeccc---cccceeeeEEecCCce
Q 001310          647 KILETPESN--SVDAAGV---LSDNLRKLSVNPISTV  678 (1103)
Q Consensus       647 ~iw~~~~~~--~~~~~~~---~~~~i~~~~~~~~~~~  678 (1103)
                      ++|++....  ....+..   +...+..++++|++..
T Consensus       387 ~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~spdg~~  423 (723)
T 1xfd_A          387 QLYSANTVGNFNRQCLSCDLVENCTYFSASFSHSMDF  423 (723)
T ss_dssp             EEEEECSSTTCCCBCSSTTSSSSCCCCEEEECTTSSE
T ss_pred             EEEEEeCCCCCCcceecccccCCCCeEEEEECCCCCE
Confidence            999986432  2333332   3455666777754443

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.91  E-value=6.5e-23  Score=253.74  Aligned_cols=386  Identities=11%  Similarity=0.077  Sum_probs=254.2

Q ss_pred             cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---------Cc
Q 001310          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------HV  601 (1103)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~  601 (1103)
                      ...+++|+|||+++++ +.    ++.|++||..+++....+..+......+.+++|+|||++|++++.+         +.
T Consensus        18 ~~~~~~~spdg~~~~~-~~----dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~   92 (723)
T 1xfd_A           18 HDPEAKWISDTEFIYR-EQ----KGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY   92 (723)
T ss_dssp             CCCCCCBSSSSCBCCC-CS----SSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred             cccccEEcCCCcEEEE-eC----CCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence            3567899999997754 32    5579999999999888777665211248999999999999998764         78


Q ss_pred             EEEEECCCCeeEEEEcC-CCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceee
Q 001310          602 IKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTG  680 (1103)
Q Consensus       602 i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  680 (1103)
                      +++||+.+++. ..+.. ..+...+..++|||||+.|+.++. +.|++|+..+++.......+...+             
T Consensus        93 i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~-------------  157 (723)
T 1xfd_A           93 YVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGV-------------  157 (723)
T ss_dssp             EEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTT-------------
T ss_pred             EEEEECCCCce-EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCc-------------
Confidence            88999999876 33332 222334788999999999999987 789999998876544332211110             


Q ss_pred             eeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ceEE
Q 001310          681 AGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHL  759 (1103)
Q Consensus       681 ~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~  759 (1103)
                                          +..+..     -|-..              ..-...+.+++|||||+.|++++.+ +.+.
T Consensus       158 --------------------~~~g~~-----~~v~~--------------ee~~~~~~~~~~SpDg~~la~~~~~~~~~~  198 (723)
T 1xfd_A          158 --------------------IYNGLS-----DWLYE--------------EEILKTHIAHWWSPDGTRLAYAAINDSRVP  198 (723)
T ss_dssp             --------------------EEEEEC-----CHHHH--------------HTTSSSSEEEEECTTSSEEEEEEEECTTSC
T ss_pred             --------------------eECccc-----ceeEE--------------EEeccCcceEEECCCCCEEEEEEECCCccc
Confidence                                000000     00000              0011245789999999999988765 4566


Q ss_pred             EeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEe
Q 001310          760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI  839 (1103)
Q Consensus       760 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~  839 (1103)
                      +|++....                    +           .+...+..+.|+++|..   ..+..|++||+.+++....+
T Consensus       199 ~~~~~~~~--------------------~-----------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l  244 (723)
T 1xfd_A          199 IMELPTYT--------------------G-----------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEM  244 (723)
T ss_dssp             EEEECCCS--------------------S-----------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEEC
T ss_pred             eEEeeccC--------------------C-----------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEe
Confidence            66543211                    0           12234678888888763   12357999999998876666


Q ss_pred             cCC------CCCeeEEEEcCCCCCEEEEEeC----CCeEEEEEcCCceeEEEecc-CCCCEE----EEEEccCCCEEEE-
Q 001310          840 MPP------SPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSEVISKLEG-HSKRVT----GLVFSDALNILVS-  903 (1103)
Q Consensus       840 ~~~------~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~~~~~l~~-h~~~V~----~l~~s~dg~~l~s-  903 (1103)
                      ..+      ...+..++||| |+++|++...    +..|++||+.+++....+.. |.+.+.    .++|||||+.|+. 
T Consensus       245 ~~~~~~~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~  323 (723)
T 1xfd_A          245 MPPDDPRMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFI  323 (723)
T ss_dssp             CCCCCGGGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEE
T ss_pred             eCCccCCCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEE
Confidence            654      56789999999 8888877653    36899999999987766654 344443    7899999997775 


Q ss_pred             -EeCCC------eEEEEE-cCCCceeeeeeeecCCCcccCCCCceE-EEEcCCCCEEEE-EeC---CeEEEEECCCce--
Q 001310          904 -SGGDA------QIFVWD-VDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQTRFLL-VHE---THLAIYEAEELT--  968 (1103)
Q Consensus       904 -~s~dg------~I~iwd-~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~fs~dg~~l~~-~~d---~~v~iwd~~~~~--  968 (1103)
                       +..++      .|.+|| ..+++...  ......++.    .+.. ++|||||+.|+. +.+   +.+.+|++....  
T Consensus       324 ~~~~~~~~~~~~~l~~~d~~~~~~~~~--~~~l~~~~~----~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~  397 (723)
T 1xfd_A          324 RAIPQGGRGKFYHITVSSSQPNSSNDN--IQSITSGDW----DVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNF  397 (723)
T ss_dssp             EEECCSSSSCEEEEEEECSSCCSSSCC--CCBSCCSSS----CEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTC
T ss_pred             EecccCCCcceeEEEEEeccCCCCccc--eeEeecCCe----EEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCC
Confidence             45677      566677 34433000  011111222    2444 699999999986 443   678999986432  


Q ss_pred             EEEEeeCC--CCcCeEEEEEccCCCEEEEEecC-C--cEEEEeCCCceeEEee
Q 001310          969 CLKQWFPI--SSVPISQATFSCDCRMVFTSFVD-G--TLSIHEASNLEVQCRI 1016 (1103)
Q Consensus       969 ~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~d-g--~v~vWd~~~~~~~~~~ 1016 (1103)
                      ....+...  |...+..++|||||++|+..... +  .+.+++..++..+..+
T Consensus       398 ~~~~l~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~  450 (723)
T 1xfd_A          398 NRQCLSCDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL  450 (723)
T ss_dssp             CCBCSSTTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred             CcceecccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence            23322221  56778999999999988865432 2  3455676666544433

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.90  E-value=2.8e-21  Score=214.00  Aligned_cols=281  Identities=10%  Similarity=0.069  Sum_probs=205.8

Q ss_pred             EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC-CC
Q 001310          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-KH  418 (1103)
Q Consensus       340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-d~  418 (1103)
                      ..|++++++++++++.++.|.+||..+++.+..                   ...+...+ +++|+|||++|++++. ++
T Consensus         3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~   62 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ   62 (331)
T ss_dssp             ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred             eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence            457777777889999999999999999987754                   22345566 9999999997777665 88


Q ss_pred             eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-C--ceEEEeCCCCceeEEeecCCCceEEEEeee
Q 001310          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-K--TIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1103)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-~--~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1103)
                      .|.+||+.+++..  ...+..+..+..+++|+|||+  +++++..+ +  .|.+||+.+++.+..+..+ ....+++|+|
T Consensus        63 ~i~~~d~~~~~~~--~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~sp  137 (331)
T 3u4y_A           63 TLVQIETQLEPPK--VVAIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAISP  137 (331)
T ss_dssp             EEEEEECSSSSCE--EEEEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEECT
T ss_pred             eEEEEECCCCcee--EEecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEECC
Confidence            9999999998751  224555655655599999999  56655544 3  8999999999998887654 4457888865


Q ss_pred             cCCcc-EEEEEECCCe-EEEEEcCCCCeeE----EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--
Q 001310          496 KENIH-FIFSISVDGK-IKAWLYDSLGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--  567 (1103)
Q Consensus       496 ~~~~~-~l~s~~~dg~-i~iwd~~~~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--  567 (1103)
                        +++ ++++...++. |.+|+++......    ...........++|+|+|++++++..   .++.|.+||+.+++.  
T Consensus       138 --dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~~  212 (331)
T 3u4y_A          138 --NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENIT  212 (331)
T ss_dssp             --TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSCE
T ss_pred             --CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCcccc
Confidence              555 4455566688 9999998654432    22233456789999999998777653   256799999999987  


Q ss_pred             -EEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCee--EEEEcCC----CC-CCCCceEEEecCCCEEE
Q 001310          568 -KRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL--LTTIDAG----GG-LPENPRICFNKNGTLLA  638 (1103)
Q Consensus       568 -~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~g~~l~  638 (1103)
                       +..+...    ..+..++|+|+++++++++ .++.|.+||..+++.  +..+...    .. ......++|+|||++|+
T Consensus       213 ~~~~~~~~----~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~  288 (331)
T 3u4y_A          213 LLNAVGTN----NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLF  288 (331)
T ss_dssp             EEEEEECS----SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEE
T ss_pred             eeeeccCC----CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEE
Confidence             6666643    4677899999999877655 578899999999887  4444322    11 11124589999999887


Q ss_pred             EEEC-CCeEEEEEcCCC
Q 001310          639 VIAN-ENRIKILETPES  654 (1103)
Q Consensus       639 ~~~~-dg~i~iw~~~~~  654 (1103)
                      +++. ++.|.+|++...
T Consensus       289 v~~~~~~~v~v~d~~~~  305 (331)
T 3u4y_A          289 ISANISRELKVFTISGK  305 (331)
T ss_dssp             EEETTTTEEEEEETTSC
T ss_pred             EecCCCCcEEEEEecCC
Confidence            6665 569999999865

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=2e-21  Score=239.38  Aligned_cols=242  Identities=10%  Similarity=0.070  Sum_probs=168.0

Q ss_pred             CeeEEEEecCCCEEEEEcCCeEEEEEcCC-----ceeeEEecCCCCC--------------eeEEEEcCCCCCEEEEEe-
Q 001310          804 AVPCFALSKNDAYLFSASGGVISLYIVMT-----FKTILTIMPPSPT--------------ATSLAFNPHDNNVIAIGM-  863 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~d~~~lasg~-  863 (1103)
                      .+.+++|||||++|+++.++.|++||+.+     ++..+....+...              +.+++||| |+++|++++ 
T Consensus       122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~  200 (706)
T 2z3z_A          122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM  200 (706)
T ss_dssp             CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred             cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence            34556777777777777677788888776     6555443333332              58999999 899999987 


Q ss_pred             --------------------------------CCCeEEEEEcCCceeEEEec--cCCCCEEEEEEccCCCEEEEEeCCC-
Q 001310          864 --------------------------------DDSTILIYNARSSEVISKLE--GHSKRVTGLVFSDALNILVSSGGDA-  908 (1103)
Q Consensus       864 --------------------------------~dg~v~iwd~~~~~~~~~l~--~h~~~V~~l~~s~dg~~l~s~s~dg-  908 (1103)
                                                      .+..|++||+.+++......  .|...+.+++|||||++|++++.++ 
T Consensus       201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~  280 (706)
T 2z3z_A          201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA  280 (706)
T ss_dssp             ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred             CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence                                            45789999999988654442  4777899999999999999988775 


Q ss_pred             ----eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC--CCCEEEEE-eCCeEEEEECC-CceEEEEeeCCCCcC
Q 001310          909 ----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK--DQTRFLLV-HETHLAIYEAE-ELTCLKQWFPISSVP  980 (1103)
Q Consensus       909 ----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~--dg~~l~~~-~d~~v~iwd~~-~~~~~~~~~~~h~~~  980 (1103)
                          .|++||+.+++..............   ..+.+++|||  ||++++++ .++.+.+|+++ ++..+.. +..|...
T Consensus       281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~~~---~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~-l~~~~~~  356 (706)
T 2z3z_A          281 QNECKVNAYDAETGRFVRTLFVETDKHYV---EPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQ-VTKGEWE  356 (706)
T ss_dssp             SCEEEEEEEETTTCCEEEEEEEEECSSCC---CCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEE-CCCSSSC
T ss_pred             CCeeEEEEEECCCCceeeEEEEccCCCeE---CccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEe-cCCCCeE
Confidence                8999999998322211111111111   1346789999  99988886 66778888775 5666655 4556777


Q ss_pred             eEE-EEEccCCCEEEEEecC-C----cEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCC
Q 001310          981 ISQ-ATFSCDCRMVFTSFVD-G----TLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKP 1054 (1103)
Q Consensus       981 v~~-l~fs~dg~~l~t~~~d-g----~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~ 1054 (1103)
                      +.. ++|+|||+.|+.++.+ +    .|..||+.+++.. .+.                    +...+.  .++|+|+ +
T Consensus       357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~~-~l~--------------------~~~~~~--~~~~spd-g  412 (706)
T 2z3z_A          357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKTK-DLT--------------------PESGMH--RTQLSPD-G  412 (706)
T ss_dssp             EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCCE-ESC--------------------CSSSEE--EEEECTT-S
T ss_pred             EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCce-ecc--------------------CCCceE--EEEECCC-C
Confidence            876 7999999988766544 3    6777777776532 222                    122243  5789998 7


Q ss_pred             cEEEEEecC----CcEEEEccCCC
Q 001310         1055 TQFAVGLTN----GEVYVIEPNEP 1074 (1103)
Q Consensus      1055 ~~l~~~~~d----g~v~vw~~~~~ 1074 (1103)
                      ..++.+..+    +.|.+|++...
T Consensus       413 ~~l~~~~~~~~~p~~i~l~d~~~~  436 (706)
T 2z3z_A          413 SAIIDIFQSPTVPRKVTVTNIGKG  436 (706)
T ss_dssp             SEEEEEEECSSCSCEEEEEESSSC
T ss_pred             CEEEEEecCCCCCcEEEEEECCCC
Confidence            777766544    46999998443

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.89  E-value=7.5e-21  Score=212.70  Aligned_cols=275  Identities=11%  Similarity=0.085  Sum_probs=213.6

Q ss_pred             CcCceEEEecCCCceEEEEEcC------CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTN------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      ...+..++|+|||++++++...      ++.|.+||..+++.+....                    ....+..++|+||
T Consensus        40 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~--------------------~~~~~~~~~~s~d   99 (353)
T 3vgz_A           40 GKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIH--------------------NDLKPFGATINNT   99 (353)
T ss_dssp             ESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEE--------------------ESSCCCSEEEETT
T ss_pred             ccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEe--------------------cCCCcceEEECCC
Confidence            3478899999999865555433      6789999999998776422                    2234678999999


Q ss_pred             CCEEEEE-eCCCeEEEEEecCCCccccceEeccccc---------cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310          408 GSLLGVA-YSKHIVQLYAYHGGSDARQQLEIDAHVG---------NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1103)
Q Consensus       408 g~~las~-~~d~~i~iwd~~~~~~~~~~~~l~~h~~---------~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  477 (1103)
                      |++++++ ..++.|.+||..+++.+.   .+..+..         .+.+++|+|+|+.+++...+.++.|.+||+.+++.
T Consensus       100 g~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~  176 (353)
T 3vgz_A          100 TQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKL  176 (353)
T ss_dssp             TTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEE
T ss_pred             CCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCce
Confidence            9966655 557899999999987554   3333321         27889999999953222224688999999999999


Q ss_pred             eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC----CCccEEEEEEccCCCEEEEEecCCCC
Q 001310          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      +..+..+...+..++++  +++.++++++.++.|.+||..+++....+..    +...+..++|+|+|++++++..   .
T Consensus       177 ~~~~~~~~~~~~~~~~s--~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~  251 (353)
T 3vgz_A          177 KTAIQNTGKMSTGLALD--SEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS---K  251 (353)
T ss_dssp             EEEECCCCTTCCCCEEE--TTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES---S
T ss_pred             EEEecCCCCccceEEEC--CCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC---C
Confidence            98887666667888885  4778899999999999999998887766554    3446788999999998887763   2


Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      ++.|.+||..+++.+..+....     ...++|+|+++++++++ .++.|.+||..+++.+..+....   .+..++|+|
T Consensus       252 ~~~v~~~d~~~~~~~~~~~~~~-----~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~  323 (353)
T 3vgz_A          252 AAEVLVVDTRNGNILAKVAAPE-----SLAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSA  323 (353)
T ss_dssp             SSEEEEEETTTCCEEEEEECSS-----CCCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECT
T ss_pred             CCEEEEEECCCCcEEEEEEcCC-----CceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcC
Confidence            5679999999999888877543     25689999999776655 68999999999999988887653   368999999


Q ss_pred             CCCEEEEEECCC
Q 001310          633 NGTLLAVIANEN  644 (1103)
Q Consensus       633 ~g~~l~~~~~dg  644 (1103)
                      +|++++++..++
T Consensus       324 dg~~l~v~~~~~  335 (353)
T 3vgz_A          324 DGKTLYVSVKQK  335 (353)
T ss_dssp             TSCEEEEEEECC
T ss_pred             CCCEEEEEEccc
Confidence            999887776654

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.89  E-value=6e-21  Score=235.16  Aligned_cols=238  Identities=9%  Similarity=-0.005  Sum_probs=166.4

Q ss_pred             EEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc-ccceEecccc-----------------ccEEEEEEecCCCceEEEE
Q 001310          399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHV-----------------GNVNDLAFSAPCKQISVIT  460 (1103)
Q Consensus       399 V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~-----------------~~v~~~~~s~d~~~~~l~s  460 (1103)
                      +..+.|+  |..+++++.++ | +||+.+++.+ .   .+..|.                 ..|.+++|+|| +  .++.
T Consensus        28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~---~l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~--~~~~   97 (706)
T 2z3z_A           28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQT---TRFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-G--LVVL   97 (706)
T ss_dssp             CTTCEEE--TTEEEEEETTE-E-EEEC-------C---EEEEHHHHHTTC-----------CCCEEEEETTT-T--EEEE
T ss_pred             CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeE---EeechhHhhhhccchhccccccccCceeEEECCC-C--eEEE
Confidence            4457788  66777777888 8 9999998752 3   233333                 46999999999 5  3433


Q ss_pred             EcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-----CCeeEEecCCCcc----
Q 001310          461 CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARVDYDAPGLG----  531 (1103)
Q Consensus       461 ~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~~~~~~~~~----  531 (1103)
                      + .++.|++||+.+++... +..+...+.+++|+  +||+.|+++ .++.|++|++.+     ++...........    
T Consensus        98 ~-~~~~i~~~d~~~~~~~~-l~~~~~~~~~~~~S--pdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g  172 (706)
T 2z3z_A           98 F-TQGGLVGFDMLARKVTY-LFDTNEETASLDFS--PVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYG  172 (706)
T ss_dssp             E-ETTEEEEEETTTTEEEE-EECCTTCCTTCEEC--TTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEES
T ss_pred             E-ECCEEEEEECCCCceEE-ccCCcccccCCcCC--CCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcc
Confidence            3 35999999999887654 44566778888885  477888884 789999999988     6554433333222    


Q ss_pred             ----------EEEEEEccCCCEEEEEecC-----------------------------CCCceeEEEEeCCCCeeEEEEe
Q 001310          532 ----------CTRMAYSANGRRLFSCGTS-----------------------------KEGESFLVEWNESEGAIKRTYQ  572 (1103)
Q Consensus       532 ----------i~~~~~s~dg~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~  572 (1103)
                                +.+++|||||++|++++.+                             ...+..|++||+.+++......
T Consensus       173 ~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~  252 (706)
T 2z3z_A          173 QAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQT  252 (706)
T ss_dssp             SCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCC
T ss_pred             cchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeecc
Confidence                      4789999999999988732                             1245789999999988655443


Q ss_pred             cccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEc-CCC--CCCCCceEEEec--CCCEEEEEEC
Q 001310          573 GLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTID-AGG--GLPENPRICFNK--NGTLLAVIAN  642 (1103)
Q Consensus       573 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~-~~~--~~~~v~~v~~s~--~g~~l~~~~~  642 (1103)
                      .. .+...+..++|+|||++|++++.++     .|++||+.+++....+. ...  ....+..++|+|  ||++++++..
T Consensus       253 ~~-~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~  331 (706)
T 2z3z_A          253 GE-PKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRR  331 (706)
T ss_dssp             CS-CTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECT
T ss_pred             CC-CCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEcc
Confidence            21 1236789999999999999987765     89999999984333332 111  111246789999  9998888888


Q ss_pred             CCeEEEEEcC
Q 001310          643 ENRIKILETP  652 (1103)
Q Consensus       643 dg~i~iw~~~  652 (1103)
                      ++.+++|...
T Consensus       332 ~g~~~l~~~~  341 (706)
T 2z3z_A          332 DGWNHLYLYD  341 (706)
T ss_dssp             TSSCEEEEEE
T ss_pred             CCccEEEEEE
Confidence            8888888654

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.89  E-value=2.2e-20  Score=207.89  Aligned_cols=277  Identities=14%  Similarity=0.157  Sum_probs=193.7

Q ss_pred             CceEEEEEcCCCcEEEEECC-CCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC-CeEEEE
Q 001310          346 QHTLLLVGTNVGDTGLWDVN-SGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK-HIVQLY  423 (1103)
Q Consensus       346 g~~llasgs~d~~v~iwd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d-~~i~iw  423 (1103)
                      +++++++++.|+.|.+||+. +++.....                  ...|...+.+++|+|||++|++++.+ +.|.+|
T Consensus         4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~   65 (343)
T 1ri6_A            4 KQTVYIASPESQQIHVWNLNHEGALTLTQ------------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY   65 (343)
T ss_dssp             EEEEEEEEGGGTEEEEEEECTTSCEEEEE------------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eEEEEEeCCCCCeEEEEEECCCCcEEEee------------------eEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence            34466676889999999995 34322111                  12367789999999999999998876 899999


Q ss_pred             Eec--CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC---CCceeEEeecCCCceEEEEeeecCC
Q 001310          424 AYH--GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRTYSFEGHGAPVYSLCPHAKEN  498 (1103)
Q Consensus       424 d~~--~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~~~~~~~~~~v~~~~~~~~~~  498 (1103)
                      ++.  +++. .....+..+. .+.+++|+|+|+. +++++..++.|.+||+.   +++.+..+..+ ..+.+++|+  ++
T Consensus        66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~~~s--~d  139 (343)
T 1ri6_A           66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGL-DGCHSANIS--PD  139 (343)
T ss_dssp             EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECCC-TTBCCCEEC--TT
T ss_pred             EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccCC-CCceEEEEC--CC
Confidence            998  5442 2222343333 7899999999994 33444558899999994   44455555543 457778885  46


Q ss_pred             ccEEEEEE-CCCeEEEEEcCC-CCeeE----Eec-CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Cee--
Q 001310          499 IHFIFSIS-VDGKIKAWLYDS-LGARV----DYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI--  567 (1103)
Q Consensus       499 ~~~l~s~~-~dg~i~iwd~~~-~~~~~----~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~~--  567 (1103)
                      +.++++++ .++.|.+||+.+ ++...    ... .....+..++|+|+|+++++++.   .++.|.+|++..  ++.  
T Consensus       140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~  216 (343)
T 1ri6_A          140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC  216 (343)
T ss_dssp             SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred             CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence            67777777 899999999987 44322    222 23457888999999998877653   256799999953  433  


Q ss_pred             EEEEeccc---ccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECC--C--CeeEEEEcCCCCCCCCceEEEecCCCEEEE
Q 001310          568 KRTYQGLQ---LQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMN--K--VQLLTTIDAGGGLPENPRICFNKNGTLLAV  639 (1103)
Q Consensus       568 ~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~  639 (1103)
                      ...+....   .....+..++|+|++++++++ ..++.|++||+.  +  .+.+..+....   .+..++|+|+|++|++
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~  293 (343)
T 1ri6_A          217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA  293 (343)
T ss_dssp             EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred             EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence            22232111   112357789999999988754 478999999998  3  34445554432   2789999999999888


Q ss_pred             EE-CCCeEEEEEcC
Q 001310          640 IA-NENRIKILETP  652 (1103)
Q Consensus       640 ~~-~dg~i~iw~~~  652 (1103)
                      ++ .++.+.+|++.
T Consensus       294 ~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          294 AGQKSHHISVYEIV  307 (343)
T ss_dssp             ECTTTCEEEEEEEE
T ss_pred             ecCCCCeEEEEEEc
Confidence            88 57999999554

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.88  E-value=2.2e-20  Score=207.37  Aligned_cols=292  Identities=12%  Similarity=0.103  Sum_probs=203.8

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE-EECCCeEEEEEcCCCCeeEeccccccceee
Q 001310          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRK  669 (1103)
Q Consensus       591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~-~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~  669 (1103)
                      +++++++.++.|++||..+++.+..+........+..++|+|+|+.+++ ...++.|.+||..+++.+..+......   
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~---   78 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPE---   78 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTT---
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCcc---
Confidence            4688899999999999999999888875431113688999999987655 455789999998877544322100000   


Q ss_pred             eEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEE
Q 001310          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1103)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  749 (1103)
                                                                                    .+...+..++|+|+|+.+
T Consensus        79 --------------------------------------------------------------~~~~~~~~~~~s~dg~~l   96 (337)
T 1pby_B           79 --------------------------------------------------------------ERVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             --------------------------------------------------------------EEEECTTCEEECTTSSEE
T ss_pred             --------------------------------------------------------------cccccccceEECCCCCEE
Confidence                                                                          000111223444444433


Q ss_pred             EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEE
Q 001310          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI  829 (1103)
Q Consensus       750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd  829 (1103)
                      +++......                                                    .++. +  -..++.|.+||
T Consensus        97 ~~~~~~~~~----------------------------------------------------~~~~-~--~~~~~~i~v~d  121 (337)
T 1pby_B           97 AIYESPVRL----------------------------------------------------ELTH-F--EVQPTRVALYD  121 (337)
T ss_dssp             EEEEEEEEE----------------------------------------------------CSSC-E--EECCCEEEEEE
T ss_pred             EEEeccccc----------------------------------------------------cccc-c--cccCceEEEEE
Confidence            333211000                                                    0000 0  00358899999


Q ss_pred             cCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC-C
Q 001310          830 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-A  908 (1103)
Q Consensus       830 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-g  908 (1103)
                      +.+++.+..+.. ...+.+++|+| ++++|+++  ++.|++||+.+++.+..+..+... ..++|+|||+.++..+.+ +
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~  196 (337)
T 1pby_B          122 AETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSG  196 (337)
T ss_dssp             TTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTT
T ss_pred             CCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCC
Confidence            999988877764 45678899999 88878777  689999999999988777654311 123789999877654433 2


Q ss_pred             -----------------------eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECC
Q 001310          909 -----------------------QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAE  965 (1103)
Q Consensus       909 -----------------------~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~  965 (1103)
                                             .|.+||+.+++... ..+....      ..+.+++|+|||++++++ ++.|.+||+.
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~-~~~~~~~------~~~~~~~~s~dg~~l~~~-~~~v~~~d~~  268 (337)
T 1pby_B          197 VMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAM-REVRIMD------VFYFSTAVNPAKTRAFGA-YNVLESFDLE  268 (337)
T ss_dssp             EEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEE-EEEEECS------SCEEEEEECTTSSEEEEE-ESEEEEEETT
T ss_pred             ceeeeeeccccccccccccccccceEEEeCCCCCceE-eecCCCC------CceeeEEECCCCCEEEEe-CCeEEEEECC
Confidence                                   46899999987542 1221111      257789999999999988 7999999999


Q ss_pred             CceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          966 ELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       966 ~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      +++.+..+..  ...+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus       269 ~~~~~~~~~~--~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~  318 (337)
T 1pby_B          269 KNASIKRVPL--PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVD  318 (337)
T ss_dssp             TTEEEEEEEC--SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEE
T ss_pred             CCcCcceecC--CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEE
Confidence            9988876543  3467899999999999999999999999999999888776

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.88  E-value=3e-20  Score=206.83  Aligned_cols=282  Identities=9%  Similarity=0.128  Sum_probs=193.8

Q ss_pred             cceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ceEEEeecCCCcccccccccccc
Q 001310          700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKV  778 (1103)
Q Consensus       700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~  778 (1103)
                      .+++++.++.|++|++.....  ...+..  ..+...+..++|+|+|+.+++++.+ +.+.+|++...            
T Consensus         7 l~~~~~~~~~v~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~------------   70 (343)
T 1ri6_A            7 VYIASPESQQIHVWNLNHEGA--LTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD------------   70 (343)
T ss_dssp             EEEEEGGGTEEEEEEECTTSC--EEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTT------------
T ss_pred             EEEeCCCCCeEEEEEECCCCc--EEEeee--EecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCC------------
Confidence            344557899999999863111  111111  1255678889999999999888886 99999997621            


Q ss_pred             CCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEc---CCceeeEEecCCCCCeeEEEEcC
Q 001310          779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV---MTFKTILTIMPPSPTATSLAFNP  853 (1103)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~---~~~~~~~~~~~~~~~i~~l~~s~  853 (1103)
                              ++.......+.   ....+..++|+|+|+++++++  ++.|.+||+   .+.+....+.. ...+.+++|+|
T Consensus        71 --------~~~~~~~~~~~---~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~  138 (343)
T 1ri6_A           71 --------DGALTFAAESA---LPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP  138 (343)
T ss_dssp             --------TCCEEEEEEEE---CSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT
T ss_pred             --------CCceeeccccc---cCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC
Confidence                    11101111111   123778999999999887765  688999999   44555555553 34688999999


Q ss_pred             CCCCEEEEEe-CCCeEEEEEcCC-ceeEE----Eecc-CCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcCC--Cceeee
Q 001310          854 HDNNVIAIGM-DDSTILIYNARS-SEVIS----KLEG-HSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDG--WGIQTC  923 (1103)
Q Consensus       854 ~d~~~lasg~-~dg~v~iwd~~~-~~~~~----~l~~-h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~~--~~~~~~  923 (1103)
                       ++++|++++ .++.|++||+.+ ++...    .+.. ....+.+++|+|+|++|++++ .++.|.+|++..  ++....
T Consensus       139 -dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~~~g~~~~~  217 (343)
T 1ri6_A          139 -DNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECV  217 (343)
T ss_dssp             -TSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEE
T ss_pred             -CCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEE
Confidence             888777777 899999999987 65432    2332 344788999999999776554 789999999954  444333


Q ss_pred             eeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECC--C--ceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310          924 RSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAE--E--LTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       924 ~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~--~--~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      ..+............+..++|+|||++|+++  .++.|.+||+.  +  .+.+..+ ..+. .+..++|+|||++|++++
T Consensus       218 ~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~-~~~~~~~s~dg~~l~~~~  295 (343)
T 1ri6_A          218 QTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQ-PTET-QPRGFNVDHSGKYLIAAG  295 (343)
T ss_dssp             EEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEE-ECSS-SCCCEEECTTSSEEEEEC
T ss_pred             eeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeee-cCCC-ccceEEECCCCCEEEEec
Confidence            3333222211112256789999999988864  57899999998  3  3344432 2233 388999999999988887


Q ss_pred             -cCCcEEEEeC--CCcee
Q 001310          998 -VDGTLSIHEA--SNLEV 1012 (1103)
Q Consensus       998 -~dg~v~vWd~--~~~~~ 1012 (1103)
                       .++.|.+|++  .++++
T Consensus       296 ~~~~~v~v~~~d~~~g~~  313 (343)
T 1ri6_A          296 QKSHHISVYEIVGEQGLL  313 (343)
T ss_dssp             TTTCEEEEEEEETTTTEE
T ss_pred             CCCCeEEEEEEcCCCcee
Confidence             6899999954  46654

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.88  E-value=1.2e-19  Score=200.87  Aligned_cols=290  Identities=8%  Similarity=0.070  Sum_probs=190.4

Q ss_pred             EEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC-CCcEEEEECCCCee-
Q 001310          535 MAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD-DHVIKIWDMNKVQL-  612 (1103)
Q Consensus       535 ~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~-  612 (1103)
                      ..|.++++++++...   .++.|.+||..+++.+..+..+.   ..+ .++|+|+++++++++. ++.|++||..+++. 
T Consensus         3 ~~~~~~~~~~~v~~~---~~~~v~~~d~~~~~~~~~~~~~~---~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~   75 (331)
T 3u4y_A            3 AMFQTTSNFGIVVEQ---HLRRISFFSTDTLEILNQITLGY---DFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPK   75 (331)
T ss_dssp             ----CCCCEEEEEEG---GGTEEEEEETTTCCEEEEEECCC---CEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCE
T ss_pred             eeEcCCCCEEEEEec---CCCeEEEEeCcccceeeeEEccC---Ccc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCcee
Confidence            356677777665543   25679999999999988877544   556 9999999998777665 89999999999887 


Q ss_pred             EEEEcCCCCCCCCceEEEecCCCEEEEEECCC---eEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceE
Q 001310          613 LTTIDAGGGLPENPRICFNKNGTLLAVIANEN---RIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  689 (1103)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg---~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  689 (1103)
                      ...+..+.  ....+++|+|+|++++++..++   .|.+||..+++.+..+.                            
T Consensus        76 ~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~----------------------------  125 (331)
T 3u4y_A           76 VVAIQEGQ--SSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIP----------------------------  125 (331)
T ss_dssp             EEEEEECS--SCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEE----------------------------
T ss_pred             EEecccCC--CCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEE----------------------------
Confidence            66665443  2334499999999999555553   89999988764433211                            


Q ss_pred             ecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec-Cce-EEEeecCCCc
Q 001310          690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS-NGV-HLMWRWPRND  767 (1103)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~-dg~-i~vw~~~~~~  767 (1103)
                                                                 .......++|+|+|+++++++. ++. +.+|++..  
T Consensus       126 -------------------------------------------~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~--  160 (331)
T 3u4y_A          126 -------------------------------------------IPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDA--  160 (331)
T ss_dssp             -------------------------------------------CCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECT--
T ss_pred             -------------------------------------------CCCCccceEECCCCCEEEEEecCCCceEEEEEECC--
Confidence                                                       0112345666666664444433 244 55555321  


Q ss_pred             cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCee
Q 001310          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTAT  847 (1103)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~  847 (1103)
                                                                   ++..           .+..    ...+ .......
T Consensus       161 ---------------------------------------------~g~~-----------~~~~----~~~~-~~~~~~~  179 (331)
T 3u4y_A          161 ---------------------------------------------DGVL-----------FDTG----QEFI-SGGTRPF  179 (331)
T ss_dssp             ---------------------------------------------TCCE-----------EEEE----EEEE-CSSSSEE
T ss_pred             ---------------------------------------------CCcE-----------eecC----Cccc-cCCCCcc
Confidence                                                         0000           0000    1111 2345578


Q ss_pred             EEEEcCCCCCEE-EEEeCCCeEEEEEcCCcee---EEEeccCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCceee
Q 001310          848 SLAFNPHDNNVI-AIGMDDSTILIYNARSSEV---ISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQT  922 (1103)
Q Consensus       848 ~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~---~~~l~~h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~~~~~~~  922 (1103)
                      .++|+| +++++ +++..++.|.+||+.+++.   +..+..+ ..+..++|+|||++|+.++ .++.|.+||+.+++...
T Consensus       180 ~~~~sp-dg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~-~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~  257 (331)
T 3u4y_A          180 NITFTP-DGNFAFVANLIGNSIGILETQNPENITLLNAVGTN-NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSF  257 (331)
T ss_dssp             EEEECT-TSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECS-SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEE
T ss_pred             ceEECC-CCCEEEEEeCCCCeEEEEECCCCcccceeeeccCC-CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceee
Confidence            999999 78755 5555689999999999887   7777744 5678999999999776554 57889999999987633


Q ss_pred             eeeeecC-CCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceE
Q 001310          923 CRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC  969 (1103)
Q Consensus       923 ~~~~~~~-~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~  969 (1103)
                      ...+... ............++|+|||++|+++  .++.|.+||+.+...
T Consensus       258 ~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~  307 (331)
T 3u4y_A          258 VKSFGHGLLIDPRPLFGANQMALNKTETKLFISANISRELKVFTISGKVV  307 (331)
T ss_dssp             EEEEECCCCCCCGGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCEE
T ss_pred             ecccccccccCCCCcccccceEECCCCCEEEEecCCCCcEEEEEecCCcc
Confidence            2222211 0000100123568999999998774  456999999986654

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.88  E-value=1.9e-19  Score=201.24  Aligned_cols=277  Identities=10%  Similarity=0.115  Sum_probs=211.6

Q ss_pred             CceEEEEEcCCCCEEEEEeC-------CCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEE
Q 001310          579 NSVSVVHFDTAKDQILAAGD-------DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILE  650 (1103)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~  650 (1103)
                      ..+..++|+|+++++++++.       ++.|.+||..+++.+..+....   .+..++|+|+|++++++. .++.|.+||
T Consensus        41 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d  117 (353)
T 3vgz_A           41 KGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---KPFGATINNTTQTLWFGNTVNSAVTAID  117 (353)
T ss_dssp             SSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---CCCSEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---CcceEEECCCCCEEEEEecCCCEEEEEe
Confidence            46788999999999988774       5689999999999888887542   367899999999666554 478999999


Q ss_pred             cCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccC
Q 001310          651 TPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPS  730 (1103)
Q Consensus       651 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~  730 (1103)
                      ..+++.+..+..+..                                                                 
T Consensus       118 ~~~~~~~~~~~~~~~-----------------------------------------------------------------  132 (353)
T 3vgz_A          118 AKTGEVKGRLVLDDR-----------------------------------------------------------------  132 (353)
T ss_dssp             TTTCCEEEEEESCCC-----------------------------------------------------------------
T ss_pred             CCCCeeEEEEecCCC-----------------------------------------------------------------
Confidence            887654432211000                                                                 


Q ss_pred             ccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE
Q 001310          731 KVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL  810 (1103)
Q Consensus       731 ~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~  810 (1103)
                                      .                                    ++.            ......+.++++
T Consensus       133 ----------------~------------------------------------~~~------------~~~~~~~~~~~~  148 (353)
T 3vgz_A          133 ----------------K------------------------------------RTE------------EVRPLQPRELVA  148 (353)
T ss_dssp             ----------------C------------------------------------CCS------------SCCCCEEEEEEE
T ss_pred             ----------------c------------------------------------ccc------------ccCCCCCceEEE
Confidence                            0                                    000            001223567788


Q ss_pred             ecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc---
Q 001310          811 SKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG---  884 (1103)
Q Consensus       811 s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~---  884 (1103)
                      +|+|++++++.   ++.|.+||..+++.+..+..+...+.+++|+| ++++|++++.++.|.+||+.+++.+..+..   
T Consensus       149 s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~  227 (353)
T 3vgz_A          149 DDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDD  227 (353)
T ss_dssp             ETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCS
T ss_pred             CCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCC
Confidence            88888776664   57899999999999988876666788999999 889999999999999999999998877764   


Q ss_pred             -CCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEE
Q 001310          885 -HSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLA  960 (1103)
Q Consensus       885 -h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~  960 (1103)
                       +...+.+++|+|||+++++++. ++.|.+||+.+++....  +...        ....++|+|||++++++  .++.|.
T Consensus       228 ~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~--~~~~--------~~~~~~~s~dg~~l~v~~~~~~~v~  297 (353)
T 3vgz_A          228 GKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAK--VAAP--------ESLAVLFNPARNEAYVTHRQAGKVS  297 (353)
T ss_dssp             SSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEE--EECS--------SCCCEEEETTTTEEEEEETTTTEEE
T ss_pred             CCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEE--EEcC--------CCceEEECCCCCEEEEEECCCCeEE
Confidence             5567889999999997776665 59999999998875442  2221        12469999999977764  578999


Q ss_pred             EEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310          961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus       961 iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
                      +||..+++.+..+..  ...+.+++|+|||++|+++..++
T Consensus       298 ~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~  335 (353)
T 3vgz_A          298 VIDAKSYKVVKTFDT--PTHPNSLALSADGKTLYVSVKQK  335 (353)
T ss_dssp             EEETTTTEEEEEEEC--CSEEEEEEECTTSCEEEEEEECC
T ss_pred             EEECCCCeEEEEEec--CCCCCeEEEcCCCCEEEEEEccc
Confidence            999999998877543  34789999999999888777664

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.87  E-value=3.7e-20  Score=205.52  Aligned_cols=280  Identities=10%  Similarity=0.050  Sum_probs=207.6

Q ss_pred             EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc-cEEEEEECCCCCEEEE-EeCCCeEEEEEec
Q 001310          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-SVNRVVWSPDGSLLGV-AYSKHIVQLYAYH  426 (1103)
Q Consensus       349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~spdg~~las-~~~d~~i~iwd~~  426 (1103)
                      ++++++.++.|.+||+.+++.+....                  .++.. .+..++|+|||+++++ +..++.|.+||+.
T Consensus         3 ~~v~~~~~~~v~~~d~~~~~~~~~~~------------------~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~   64 (337)
T 1pby_B            3 YILAPARPDKLVVIDTEKMAVDKVIT------------------IADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLV   64 (337)
T ss_dssp             EEEEEETTTEEEEEETTTTEEEEEEE------------------CTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEEEcCCCCeEEEEECCCCcEEEEEE------------------cCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECC
Confidence            68889999999999999988765421                  12222 4788999999987654 4567899999999


Q ss_pred             CCCccccceEecc---ccccEEEEEEecCCCceEEEEEc------------CCCceEEEeCCCCceeEEeecCCCceEEE
Q 001310          427 GGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       427 ~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~~~~~~~~~~v~~~  491 (1103)
                      +++.+... ....   |...+.+++|+|||+  .+++++            .++.|.+||+.+++.+..+.. ...+.++
T Consensus        65 ~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~-~~~~~~~  140 (337)
T 1pby_B           65 TGETLGRI-DLSTPEERVKSLFGAALSPDGK--TLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA-PRQITML  140 (337)
T ss_dssp             TCCEEEEE-ECCBTTEEEECTTCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC-CSSCCCE
T ss_pred             CCCeEeeE-EcCCcccccccccceEECCCCC--EEEEEecccccccccccccCceEEEEECCCCcEEEEEeC-CCCccee
Confidence            88755422 1111   233677899999999  566554            579999999999998887764 4456777


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC------------------
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------------------  553 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------------------  553 (1103)
                      +|+  +++.+++++  ++.|.+||+.+++....+...... ..+.|+|+|+.++..+.....                  
T Consensus       141 ~~s--~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (337)
T 1pby_B          141 AWA--RDGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPT  215 (337)
T ss_dssp             EEC--TTSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGG
T ss_pred             EEC--CCCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEEeeeccCCCceeeeeecccccccccccc
Confidence            775  466777777  689999999988776665544311 123789999877655421110                  


Q ss_pred             --ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          554 --ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       554 --~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                        ...|.+||..+++.. .+.... +...+..++|+|++++++++  ++.|++||+.+++.+..+....   .+.+++|+
T Consensus       216 ~~~~~v~~~d~~~~~~~-~~~~~~-~~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s  288 (337)
T 1pby_B          216 AYRTGLLTMDLETGEMA-MREVRI-MDVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPH---SYYSVNVS  288 (337)
T ss_dssp             GEEEEEEEEETTTCCEE-EEEEEE-CSSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSS---CCCEEEEC
T ss_pred             ccccceEEEeCCCCCce-EeecCC-CCCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCC---ceeeEEEC
Confidence              014789999998875 322211 22578899999999999888  6999999999999888876542   46899999


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCCCeeEeccc
Q 001310          632 KNGTLLAVIANENRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       632 ~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1103)
                      |+|+++++++.++.|.+||+.+++.+..+..
T Consensus       289 ~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~  319 (337)
T 1pby_B          289 TDGSTVWLGGALGDLAAYDAETLEKKGQVDL  319 (337)
T ss_dssp             TTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred             CCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence            9999999998999999999999887766653

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.87  E-value=1.2e-20  Score=205.06  Aligned_cols=257  Identities=14%  Similarity=0.114  Sum_probs=187.6

Q ss_pred             EEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecC-CCc
Q 001310          352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG-GSD  430 (1103)
Q Consensus       352 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~-~~~  430 (1103)
                      .++.|++|++||+.+++...                    +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus        17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~   75 (297)
T 2ojh_A           17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP   75 (297)
T ss_dssp             -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred             CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence            44678999999999887553                    334788999999999999999986 78999999998 764


Q ss_pred             cccceEeccc-cccEEEEEEecCCCceEEEEEc--CCCceEEEeC--CCCceeEEeecCCCceEEEEeeecCCccEEE-E
Q 001310          431 ARQQLEIDAH-VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDA--VTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-S  504 (1103)
Q Consensus       431 ~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~--~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s  504 (1103)
                      ..   ...+| ...+.+++|+|||+  .+++++  .++.+.||.+  .+++ ...+..+. .+..++|++  ++..|+ +
T Consensus        76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~-~~~~~~~sp--dg~~l~~~  146 (297)
T 2ojh_A           76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGT-PRLMTKNL-PSYWHGWSP--DGKSFTYC  146 (297)
T ss_dssp             EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCC-CEECCSSS-SEEEEEECT--TSSEEEEE
T ss_pred             eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCc-eEEeecCC-CccceEECC--CCCEEEEE
Confidence            43   23344 46789999999999  677777  4455666654  4444 44554443 477788854  666666 7


Q ss_pred             EECCCeEEEEEcCCC-CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCeeEEEEecccccCCceE
Q 001310          505 ISVDGKIKAWLYDSL-GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAIKRTYQGLQLQHNSVS  582 (1103)
Q Consensus       505 ~~~dg~i~iwd~~~~-~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~~~v~  582 (1103)
                      ++.++.+++|+++.. .....+..+...+.+++|+|+|+++++++..   ++.+.+|++. .+.....+..+.   ..+.
T Consensus       147 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~---~~~~  220 (297)
T 2ojh_A          147 GIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSR---TGQMQIWRVRVDGSSVERITDSA---YGDW  220 (297)
T ss_dssp             EEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECT---TSSCEEEEEETTSSCEEECCCCS---EEEE
T ss_pred             ECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecC---CCCccEEEECCCCCCcEEEecCC---cccC
Confidence            889999999997543 3344556667789999999999998877631   2346666654 344556666555   6788


Q ss_pred             EEEEcCCCCEEEEEeCC-----------CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310          583 VVHFDTAKDQILAAGDD-----------HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1103)
Q Consensus       583 ~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg  644 (1103)
                      .++|+|++++|++++.+           +.|++||+.+++.........+...+..++|+|+|++|++++.+.
T Consensus       221 ~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          221 FPHPSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             EEEECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred             CeEECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence            99999999999988765           569999999887644433222234588899999999998887654

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.86  E-value=8.5e-21  Score=234.24  Aligned_cols=378  Identities=12%  Similarity=0.036  Sum_probs=242.8

Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---------CCcEEE
Q 001310          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---------DHVIKI  604 (1103)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~i  604 (1103)
                      .++|+|||++++++ .    ++.|++||+.+++....+.++......+.+++|+|||++|++++.         ++.|++
T Consensus        20 ~~~~s~dg~~~~~~-~----d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~   94 (719)
T 1z68_A           20 FPNWISGQEYLHQS-A----DNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYI   94 (719)
T ss_dssp             CCEESSSSEEEEEC-T----TSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccEECCCCeEEEEc-C----CCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEE
Confidence            57899999655543 2    556999999999988777765411124889999999999998876         789999


Q ss_pred             EECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeecc
Q 001310          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA  684 (1103)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  684 (1103)
                      ||+.+++.+......   ..+..++|||||+.|+.+. ++.|++|++.+++.........                    
T Consensus        95 ~d~~~g~~~~~~~l~---~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~--------------------  150 (719)
T 1z68_A           95 YDLSNGEFVRGNELP---RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR--------------------  150 (719)
T ss_dssp             EETTTTEECCSSCCC---SSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB--------------------
T ss_pred             EECCCCccccceecC---cccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC--------------------
Confidence            999998773111111   3478899999999999986 6799999998775543211000                    


Q ss_pred             CCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ceEEEeec
Q 001310          685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRW  763 (1103)
Q Consensus       685 ~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~  763 (1103)
                                   ...+..|..+   .++.-                .......+++|||||+.|++++.+ +.+.+|.+
T Consensus       151 -------------~~~v~~g~~~---~v~~e----------------e~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~  198 (719)
T 1z68_A          151 -------------ENKIFNGIPD---WVYEE----------------EMLATKYALWWSPNGKFLAYAEFNDTDIPVIAY  198 (719)
T ss_dssp             -------------TTTEEESSCC---HHHHH----------------HTTCSSCCEEECTTSSEEEEEEEECTTSCEEEE
T ss_pred             -------------cCCeEccccc---ceeee----------------ecccCcccEEECCCCCEEEEEEECCCCCceEEe
Confidence                         0000000000   00000                000123578999999999988765 44555543


Q ss_pred             CCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceee-------
Q 001310          764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTI-------  836 (1103)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~-------  836 (1103)
                      ....                    .           .+...+..+.+...|..   .....|++||+.+++..       
T Consensus       199 ~~~~--------------------~-----------~~~~~~~~~~yp~~g~~---~~~~~l~~~d~~~~~~~~~~~~~~  244 (719)
T 1z68_A          199 SYYG--------------------D-----------EQYPRTINIPYPKAGAK---NPVVRIFIIDTTYPAYVGPQEVPV  244 (719)
T ss_dssp             EECC--------------------S-----------SSSCEEEEEECCBTTSC---CCEEEEEEEESSCHHHHCCEECCC
T ss_pred             eccC--------------------C-----------CCCccceeecCCCCCCC---CCeeEEEEEECCCCCccceeEccC
Confidence            2110                    0           12233444555444431   11247999999988753       


Q ss_pred             -EEecCCCCCeeEEEEcCCCCCEEEEEeCC----CeEEEEE----cCCceeEEEe----ccCCCCEE-----EEEEccCC
Q 001310          837 -LTIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYN----ARSSEVISKL----EGHSKRVT-----GLVFSDAL  898 (1103)
Q Consensus       837 -~~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd----~~~~~~~~~l----~~h~~~V~-----~l~~s~dg  898 (1103)
                       ..+..+...+.+++||| |++++++....    ..|++||    +.+++....+    .+|.+.+.     .++|||||
T Consensus       245 ~~~~~~~~~~~~~~~~Sp-D~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg  323 (719)
T 1z68_A          245 PAMIASSDYYFSWLTWVT-DERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDA  323 (719)
T ss_dssp             CHHHHTSCEEEEEEEESS-SSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTS
T ss_pred             CccCCCCcceEEEeEEeC-CCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCC
Confidence             12335777899999999 78777774432    3588999    8888766555    46777776     88999999


Q ss_pred             CEEEE--EeCCC--eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeC-----CeEEEEECCC--
Q 001310          899 NILVS--SGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-----THLAIYEAEE--  966 (1103)
Q Consensus       899 ~~l~s--~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d-----~~v~iwd~~~--  966 (1103)
                      +.|+.  ...+|  .|.+||+.+++..   .+.  .+.    ..+..+.++ +++.|+. +.+     +...+|.+..  
T Consensus       324 ~~l~~~~~~~~g~~~l~~~~~~~~~~~---~lt--~~~----~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~  393 (719)
T 1z68_A          324 ISYYKIFSDKDGYKHIHYIKDTVENAI---QIT--SGK----WEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGS  393 (719)
T ss_dssp             SCEEEEEECTTSCEEEEEESSCSTTCE---ECS--CSS----SCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSS
T ss_pred             CeEEEEEEccCCceEEEEEECCCCceE---ecc--cCc----eEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCC
Confidence            96654  44555  5777787776521   111  111    146777788 8888877 443     6677887653  


Q ss_pred             ceE-EEEee---CCCCcCeEEEEEccCCCEEEEE-ecC--CcEEEEeCCCceeEEeec
Q 001310          967 LTC-LKQWF---PISSVPISQATFSCDCRMVFTS-FVD--GTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       967 ~~~-~~~~~---~~h~~~v~~l~fs~dg~~l~t~-~~d--g~v~vWd~~~~~~~~~~~ 1017 (1103)
                      +.. ...+.   .+|...+..+.||+|+++++.. +.+  ..+.+||+.+++....+.
T Consensus       394 g~~~~~~l~~~~~~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~  451 (719)
T 1z68_A          394 YPPSKKCVTCHLRKERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE  451 (719)
T ss_dssp             SSCCEEESSTTTTTTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred             CCCCceeccCccCCCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence            421 12211   2266778899999999887743 333  468999999888655444

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=4.4e-19  Score=197.66  Aligned_cols=278  Identities=12%  Similarity=0.100  Sum_probs=184.9

Q ss_pred             cccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeec---CceEEEeecCCCccccccccccccCCee
Q 001310          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALAS---NGVHLMWRWPRNDLTLSTEATTKVPPRL  782 (1103)
Q Consensus       706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~---dg~i~vw~~~~~~~~~~~~~~~~~~~~~  782 (1103)
                      .++.+.+|.++..... ...+..  ..+...+..++|+|+|+ +++++.   ++.|.+|++......            .
T Consensus        14 ~~~~i~v~~~d~~tg~-~~~~~~--~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~------------~   77 (347)
T 3hfq_A           14 TSQGIYQGTLDTTAKT-LTNDGL--LAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAH------------K   77 (347)
T ss_dssp             SCCEEEEEEEETTTTE-EEEEEE--EEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEE------------E
T ss_pred             CCCCEEEEEEcCCCCe-EEEeee--eeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEE------------E
Confidence            3456777777642211 111111  12345667899999999 666654   588999987443210            0


Q ss_pred             ecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcC---CceeeEEecCC---------CCCeeE
Q 001310          783 YQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVM---TFKTILTIMPP---------SPTATS  848 (1103)
Q Consensus       783 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~---~~~~~~~~~~~---------~~~i~~  848 (1103)
                              +..  +.  .+...+..++|+|||++|++++  ++.|.+|++.   ..+.+..+...         ...+.+
T Consensus        78 --------~~~--~~--~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~  145 (347)
T 3hfq_A           78 --------LNT--VV--APGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHY  145 (347)
T ss_dssp             --------EEE--EE--EESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEE
T ss_pred             --------eee--ee--cCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceE
Confidence                    000  00  1456778999999999888886  5889999996   23333333221         224889


Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEEcC-CceeE--EEeccC-CCCEEEEEEccCCCEEEE-EeCCCeEEEEEcCC--Ccee
Q 001310          849 LAFNPHDNNVIAIGMDDSTILIYNAR-SSEVI--SKLEGH-SKRVTGLVFSDALNILVS-SGGDAQIFVWDVDG--WGIQ  921 (1103)
Q Consensus       849 l~~s~~d~~~lasg~~dg~v~iwd~~-~~~~~--~~l~~h-~~~V~~l~~s~dg~~l~s-~s~dg~I~iwd~~~--~~~~  921 (1103)
                      ++|+| +++++++...++.|++|++. +++..  ..+..+ ...+..++|+|||++|++ ...++.|.+|+++.  ++..
T Consensus       146 ~~~sp-dg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~  224 (347)
T 3hfq_A          146 TDLTP-DNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFT  224 (347)
T ss_dssp             EEECT-TSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred             EEECC-CCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceE
Confidence            99999 77777777778999999998 55432  222322 236788999999996665 55688999999885  5543


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCC-c--eEEEEeeCCCCcCeEEEEEccCCCEEEEE
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEE-L--TCLKQWFPISSVPISQATFSCDCRMVFTS  996 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~-~--~~~~~~~~~h~~~v~~l~fs~dg~~l~t~  996 (1103)
                      ....+............+..++|+|||++|+++  .++.|.+|++.. +  +.+.. ...+...+..++|+|||++|+++
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~-~~~~~~~~~~~~~spdg~~l~v~  303 (347)
T 3hfq_A          225 QLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQ-ISTEGDFPRDFDLDPTEAFVVVV  303 (347)
T ss_dssp             EEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEE-EECSSSCCCEEEECTTSSEEEEE
T ss_pred             EeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEE-EecCCCCcCeEEECCCCCEEEEE
Confidence            333333322211111247889999999988663  578999999972 2  44444 33456678899999999999888


Q ss_pred             ecC-CcEEEE--eCCCceeE
Q 001310          997 FVD-GTLSIH--EASNLEVQ 1013 (1103)
Q Consensus       997 ~~d-g~v~vW--d~~~~~~~ 1013 (1103)
                      +.+ +.|.+|  |..+|++.
T Consensus       304 ~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          304 NQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             ETTTTEEEEEEECTTTCCEE
T ss_pred             EcCCCcEEEEEEeCCCCeEE
Confidence            765 899999  55677665

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.85  E-value=4.7e-20  Score=221.22  Aligned_cols=272  Identities=12%  Similarity=0.072  Sum_probs=197.8

Q ss_pred             CcCceEEEecCCCceEEEEEcC-CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC-ccEEEEEECCCCCEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLL  411 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~spdg~~l  411 (1103)
                      ..+|++++|||||++ ||+++. ||++.||++.+++...                    +..|. ..|..++|||| +.+
T Consensus        21 ~~~~~~~~~~~DG~~-la~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l   78 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDK-LLVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI   78 (582)
T ss_dssp             HSCEEEEEEEETTTE-EEEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred             ccchheeecCCCCCe-EEEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence            457999999999995 566555 9999999997665443                    33454 68999999999 777


Q ss_pred             EEEeC---CCeEEEEEecC--CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          412 GVAYS---KHIVQLYAYHG--GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       412 as~~~---d~~i~iwd~~~--~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      ++++.   +....+|.+..  .....   .+..+. .+...+|+|||+.+++++++.++ +.+||+.+++.......+. 
T Consensus        79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~-~~l~d~~~g~~~~l~~~~~-  152 (582)
T 3o4h_A           79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDR-VALYALDGGGLRELARLPG-  152 (582)
T ss_dssp             EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSC-EEEEEEETTEEEEEEEESS-
T ss_pred             EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCC-ceEEEccCCcEEEeecCCC-
Confidence            77765   45567766654  22111   222222 34467899999875666666655 4599999988765554333 


Q ss_pred             ceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          487 PVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                        .+++|+  +||++|++++.+    +.|++||+.+++.. .+..+...+..++|||||+.|+++..  ++...|++||+
T Consensus       153 --~~~~~s--pDG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~  225 (582)
T 3o4h_A          153 --FGFVSD--IRGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP  225 (582)
T ss_dssp             --CEEEEE--EETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred             --ceEEEC--CCCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence              666675  477899988877    78999999887755 55667778899999999999995443  33458999999


Q ss_pred             CCCeeEEEEecccccCCceEEEE--------EcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVH--------FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNG  634 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g  634 (1103)
                      .+++.. .+.++.   ..+..++        |+|||..+++++.++.+++|++  ++.....     ...+.+++|+ ++
T Consensus       226 ~~~~~~-~~~~~~---~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg  293 (582)
T 3o4h_A          226 RDGSVE-DLELPS---KDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RG  293 (582)
T ss_dssp             TTCCEE-ECCCSC---SHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TT
T ss_pred             CCCcEE-EccCCC---cChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CC
Confidence            999877 666554   4555556        9999988888999999999999  6655421     1347789999 99


Q ss_pred             CEEEEEECCCe---EEEEEcC
Q 001310          635 TLLAVIANENR---IKILETP  652 (1103)
Q Consensus       635 ~~l~~~~~dg~---i~iw~~~  652 (1103)
                      +++++++.+..   +.+|+..
T Consensus       294 ~~l~~~s~~~~p~~l~~~d~~  314 (582)
T 3o4h_A          294 KLVTSHTSLSTPPRIVSLPSG  314 (582)
T ss_dssp             EEEEEEEETTEEEEEEEETTC
T ss_pred             EEEEEEcCCCCCCeEEEEcCC
Confidence            99988877644   5555544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.85  E-value=1.4e-18  Score=193.58  Aligned_cols=249  Identities=12%  Similarity=0.135  Sum_probs=171.0

Q ss_pred             CCCCeeEEEEecCCCEEEEEc---CCeEEEEEcCCce--eeEEecCCCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEEcC
Q 001310          801 SQEAVPCFALSKNDAYLFSAS---GGVISLYIVMTFK--TILTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNAR  874 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~--~~~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~  874 (1103)
                      +...+..++|+|||+++++..   ++.|.+|++.+++  .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus        38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~  116 (347)
T 3hfq_A           38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA  116 (347)
T ss_dssp             ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred             ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence            345677899999999444443   3789999998765  4444455677889999999 888888877 78999999996


Q ss_pred             -Cc--eeEEEecc---------CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcC-CCceeeeeeeecCCCcccCCCCceE
Q 001310          875 -SS--EVISKLEG---------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSETH  941 (1103)
Q Consensus       875 -~~--~~~~~l~~---------h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~~  941 (1103)
                       ++  +.+..+..         +...+.+++|+|||+++++...++.|.+|++. +++......+....+     ..+..
T Consensus       117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g-----~~p~~  191 (347)
T 3hfq_A          117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG-----FGPRH  191 (347)
T ss_dssp             TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT-----CCEEE
T ss_pred             CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC-----CCCce
Confidence             33  33333321         12348899999999977777778999999998 555433222222222     24678


Q ss_pred             EEEcCCCCEEEEE--eCCeEEEEECCC--ceEE--EEeeCCC-----CcCeEEEEEccCCCEEE-EEecCCcEEEEeCCC
Q 001310          942 IQFHKDQTRFLLV--HETHLAIYEAEE--LTCL--KQWFPIS-----SVPISQATFSCDCRMVF-TSFVDGTLSIHEASN 1009 (1103)
Q Consensus       942 l~fs~dg~~l~~~--~d~~v~iwd~~~--~~~~--~~~~~~h-----~~~v~~l~fs~dg~~l~-t~~~dg~v~vWd~~~ 1009 (1103)
                      ++|+|||++++++  .++.+.+|+++.  ++..  .......     ...+..++|+|||++|+ +...++.|.+|++..
T Consensus       192 ~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          192 LVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            9999999987774  567899999874  5532  2211111     14588899999999875 455689999999973


Q ss_pred             -c--eeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEec-CCcEEEEccCCCCCC
Q 001310         1010 -L--EVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLT-NGEVYVIEPNEPGDT 1077 (1103)
Q Consensus      1010 -~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~-dg~v~vw~~~~~~~~ 1077 (1103)
                       +  +.+..+.                   .++..  +..++|+|+ +++|++++. ++.|.+|++....++
T Consensus       272 ~g~~~~~~~~~-------------------~~~~~--~~~~~~spd-g~~l~v~~~~~~~v~v~~~d~~tg~  321 (347)
T 3hfq_A          272 DGHLTLIQQIS-------------------TEGDF--PRDFDLDPT-EAFVVVVNQNTDNATLYARDLTSGK  321 (347)
T ss_dssp             GGCEEEEEEEE-------------------CSSSC--CCEEEECTT-SSEEEEEETTTTEEEEEEECTTTCC
T ss_pred             CCcEEEeEEEe-------------------cCCCC--cCeEEECCC-CCEEEEEEcCCCcEEEEEEeCCCCe
Confidence             3  3333332                   11221  246789999 777777665 589999977544444

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.84  E-value=1.9e-19  Score=195.49  Aligned_cols=244  Identities=11%  Similarity=0.068  Sum_probs=181.2

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCC-CCeeeeeeeeEeeccccccceeeeeccCC-CccEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNS-GQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRV  402 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~  402 (1103)
                      .....+..|...|.+++|||||+ +|++++ ++.|.+||+.+ ++....                   ..+| ...|.++
T Consensus        32 ~~~~~~~~~~~~v~~~~~spdg~-~l~~~~-~~~i~~~d~~~~~~~~~~-------------------~~~~~~~~~~~~   90 (297)
T 2ojh_A           32 RKMRVVWQTPELFEAPNWSPDGK-YLLLNS-EGLLYRLSLAGDPSPEKV-------------------DTGFATICNNDH   90 (297)
T ss_dssp             TEEEEEEEESSCCEEEEECTTSS-EEEEEE-TTEEEEEESSSCCSCEEC-------------------CCTTCCCBCSCC
T ss_pred             CceeeeccCCcceEeeEECCCCC-EEEEEc-CCeEEEEeCCCCCCceEe-------------------ccccccccccce
Confidence            33455667888999999999999 466665 78999999998 765532                   3334 4788999


Q ss_pred             EECCCCCEEEEEe--CCCeEEEEEe--cCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC-CCce
Q 001310          403 VWSPDGSLLGVAY--SKHIVQLYAY--HGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV-TGSR  477 (1103)
Q Consensus       403 ~~spdg~~las~~--~d~~i~iwd~--~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~-~~~~  477 (1103)
                      +|+|||++|++++  .++.+.||.+  .++. ..   .+..+ ..+.+++|+||++. ++++++.|+.+++|++. .+..
T Consensus        91 ~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~-~~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~~  164 (297)
T 2ojh_A           91 GISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKN-LPSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSGV  164 (297)
T ss_dssp             EECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSS-SSEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTCC
T ss_pred             EECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecC-CCccceEECCCCCE-EEEEECCCCceEEEEEECCCCc
Confidence            9999999999998  3345556655  4443 21   33333 34899999999994 34478889999999864 2334


Q ss_pred             eEEeecCCCceEEEEeeecCCccEEEEEE-CCCeEEEEEcC-CCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC---
Q 001310          478 TYSFEGHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE---  552 (1103)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~---  552 (1103)
                      ...+..+...+.+++|++  ++..++.++ .++.+++|+++ .......+..+...+..++|+|+|++|++++.++.   
T Consensus       165 ~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          165 ETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD  242 (297)
T ss_dssp             EEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred             ceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence            566777888899999855  667777665 59999999987 44555666667778999999999999998876432   


Q ss_pred             ----CceeEEEEeCCCCeeEEEE--ecccccCCceEEEEEcCCCCEEEEEeCCC
Q 001310          553 ----GESFLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1103)
Q Consensus       553 ----~~~~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  600 (1103)
                          ....|++||+.+++.....  .++.   ..+..++|+|++++|++++.+.
T Consensus       243 ~~~~~~~~l~~~d~~~~~~~~~~~~~~~~---~~~~~~~~spdg~~l~~~~~~~  293 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDGGNVETLFDLFGGQ---GTMNSPNWSPDGDEFAYVRYFP  293 (297)
T ss_dssp             CCSSEEEEEEEEETTSCSCEEEEEEEEST---TTSCSCCBCTTSSEEEEEEECC
T ss_pred             ccccCceEEEEEecCCCCceeeeccCCCC---cccccceECCCCCEEEEEEecc
Confidence                2367999999988764433  3544   6788899999999999877553

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.84  E-value=4.6e-20  Score=227.67  Aligned_cols=279  Identities=14%  Similarity=0.078  Sum_probs=196.9

Q ss_pred             eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc---cEEEEEECCCCCEEEEE
Q 001310          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV---SVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~---~V~~~~~spdg~~las~  414 (1103)
                      ..++|+|||+ +++++ .|++|++||+.+++....                   +.+|..   .|.+++|||||++||++
T Consensus        19 ~~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~~-------------------~~~~~~~~~~~~~~~~SpDg~~la~~   77 (719)
T 1z68_A           19 FFPNWISGQE-YLHQS-ADNNIVLYNIETGQSYTI-------------------LSNRTMKSVNASNYGLSPDRQFVYLE   77 (719)
T ss_dssp             CCCEESSSSE-EEEEC-TTSCEEEEESSSCCEEEE-------------------ECHHHHHTTTCSEEEECTTSSEEEEE
T ss_pred             CccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEEE-------------------EccccccccceeeEEECCCCCeEEEE
Confidence            3789999996 66665 589999999999986543                   222332   48899999999999998


Q ss_pred             eC---------CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecC
Q 001310          415 YS---------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGH  484 (1103)
Q Consensus       415 ~~---------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~  484 (1103)
                      +.         ++.|++||+.+++.+... .+   ...+..++|||||+  .|+.+. |+.|++||+.+++..+.. .++
T Consensus        78 ~~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~  150 (719)
T 1z68_A           78 SDYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGR  150 (719)
T ss_dssp             EEEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCB
T ss_pred             ecCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCC
Confidence            76         689999999998652101 12   24688999999999  566665 789999999988775432 233


Q ss_pred             CCce-----------------EEEEeeecCCccEEEEEECCC----------------------------------eEEE
Q 001310          485 GAPV-----------------YSLCPHAKENIHFIFSISVDG----------------------------------KIKA  513 (1103)
Q Consensus       485 ~~~v-----------------~~~~~~~~~~~~~l~s~~~dg----------------------------------~i~i  513 (1103)
                      ...|                 .+++|  ++||+.|++++.|.                                  .|++
T Consensus       151 ~~~v~~g~~~~v~~ee~~~~~~~~~w--SPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~  228 (719)
T 1z68_A          151 ENKIFNGIPDWVYEEEMLATKYALWW--SPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFI  228 (719)
T ss_dssp             TTTEEESSCCHHHHHHTTCSSCCEEE--CTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred             cCCeEcccccceeeeecccCcccEEE--CCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEE
Confidence            3222                 36777  55888999887652                                  7889


Q ss_pred             EEcCCCCee--EE------ecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe----CCCCeeEEEE----eccccc
Q 001310          514 WLYDSLGAR--VD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN----ESEGAIKRTY----QGLQLQ  577 (1103)
Q Consensus       514 wd~~~~~~~--~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~  577 (1103)
                      ||+.+++..  ..      +..+...+..++|+||++.+++..........|++||    ..+++....+    .++.  
T Consensus       229 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~--  306 (719)
T 1z68_A          229 IDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRT--  306 (719)
T ss_dssp             EESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSS--
T ss_pred             EECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCC--
Confidence            999876642  12      2246667899999999887776544334456799999    8887765554    2333  


Q ss_pred             CCceE-----EEEEcCCCCEEEE--EeCCC--cEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC-----
Q 001310          578 HNSVS-----VVHFDTAKDQILA--AGDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-----  643 (1103)
Q Consensus       578 ~~~v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----  643 (1103)
                       ..+.     .+.|+|||+.++.  ...+|  .|++||+.+++ ...+..+  ...+..+.++ +++.++..+.+     
T Consensus       307 -~~~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~-~~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~  381 (719)
T 1z68_A          307 -GWAGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVEN-AIQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYP  381 (719)
T ss_dssp             -SCSSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTT-CEECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCT
T ss_pred             -ceEccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCc-eEecccC--ceEEEEEEEE-eCCEEEEEEecCCCCC
Confidence             4454     7889999997655  33444  57777887766 3344322  2335667777 88888777765     


Q ss_pred             CeEEEEEcCC
Q 001310          644 NRIKILETPE  653 (1103)
Q Consensus       644 g~i~iw~~~~  653 (1103)
                      +..++|.+..
T Consensus       382 ~~~~l~~~~~  391 (719)
T 1z68_A          382 GRRNIYRISI  391 (719)
T ss_dssp             TCBEEEEEEC
T ss_pred             ceEEEEEEeC
Confidence            7888888754

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.84  E-value=4e-19  Score=201.50  Aligned_cols=309  Identities=10%  Similarity=0.011  Sum_probs=202.8

Q ss_pred             cccCCccceeEecccCCcCceE-----EEecCCCceEEEEEcCCC--cEEEEECCCCCeeeeeeeeEeeccccccceeee
Q 001310          318 SFSDFPKTVAQTLIEGSSSPMS-----MDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA  390 (1103)
Q Consensus       318 ~~~~~p~~~~~~l~~h~~~V~~-----v~~spdg~~llasgs~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (1103)
                      +++.........|..|...+..     .+|||||+++++++..++  .|.+||+.+++....                  
T Consensus        14 ~~~~~~g~~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~l------------------   75 (388)
T 3pe7_A           14 YQDASTGAQVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQL------------------   75 (388)
T ss_dssp             EECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEEC------------------
T ss_pred             EecCCCCcceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEe------------------
Confidence            4445556677788888766665     899999996555554467  488889988876542                  


Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEE--EecCCCceEEEE--------
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLA--FSAPCKQISVIT--------  460 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~--~s~d~~~~~l~s--------  460 (1103)
                       ..+|...+..++|||||++|++++.++.|++||+.+++...   ....+...+....  ++||++  .++.        
T Consensus        76 -t~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~  149 (388)
T 3pe7_A           76 -TEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDW  149 (388)
T ss_dssp             -CCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGC
T ss_pred             -eeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCccc
Confidence             34455555577899999999999999999999999986443   2334444444333  489998  4543        


Q ss_pred             --------------EcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC------CeEEEEEcCCCC
Q 001310          461 --------------CGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLG  520 (1103)
Q Consensus       461 --------------~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~  520 (1103)
                                    .+.+..|.+||+.+++.. .+..+...+..++|+|. ++..|+..+.+      ..|.++|.+...
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~-~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~  227 (388)
T 3pe7_A          150 VPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST-VILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTN  227 (388)
T ss_dssp             CCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCC
T ss_pred             ccccccchhhhhhccCCcceEEEEECCCCceE-EeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCc
Confidence                          224468999999998754 44456677888888541 56777777653      367777776554


Q ss_pred             eeEEecCCC-ccEEEEEEccCCCEEEEEecC-CCCceeEEEEeCCCCeeEEE--EecccccCCceEEEEEcCCCCEEEEE
Q 001310          521 ARVDYDAPG-LGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRT--YQGLQLQHNSVSVVHFDTAKDQILAA  596 (1103)
Q Consensus       521 ~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~  596 (1103)
                      ......... ..+..++|+|||+.|+..+.. +.....|++||+.+++....  +.++...........|+|+|+.|+..
T Consensus       228 ~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~  307 (388)
T 3pe7_A          228 MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVD  307 (388)
T ss_dssp             CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC---
T ss_pred             eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeE
Confidence            433222222 357789999999988765543 22234599999999875332  22210000001123689999988764


Q ss_pred             ---------eCCCcEEEEECCCCeeEEEEcCCCCC--------CCCceEEEecCCCEEEEEEC-CCeEEEEEcC
Q 001310          597 ---------GDDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKILETP  652 (1103)
Q Consensus       597 ---------~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~  652 (1103)
                               ..+..|++||+.+++...........        ..+..++|+|||+.|+..+. ++...+|.+.
T Consensus       308 ~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          308 VQDDSGYKIENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             ---------CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred             eeeccccccCCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence                     45678999999988765443332210        03678899999998887764 6666666543

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.6e-17  Score=186.12  Aligned_cols=310  Identities=11%  Similarity=0.113  Sum_probs=196.0

Q ss_pred             cCCCEEEEEecCCCCceeEEEEeC--CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCC--C
Q 001310          539 ANGRRLFSCGTSKEGESFLVEWNE--SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNK--V  610 (1103)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~  610 (1103)
                      +...++++++.....++.|++|.+  .+++.......+   ...+..++|+|++++|++++.+    +.|.+|++..  +
T Consensus        11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~---~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g   87 (361)
T 3scy_A           11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE---VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKG   87 (361)
T ss_dssp             GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE---CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTT
T ss_pred             CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc---CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCC
Confidence            444566666654444556777754  566654433332   3667889999999999998875    7999998765  4


Q ss_pred             eeE--EEEcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCc
Q 001310          611 QLL--TTIDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGS  687 (1103)
Q Consensus       611 ~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  687 (1103)
                      +..  .....+  ......+++  +++++++++ .++.+.+|++.....+.....                         
T Consensus        88 ~~~~~~~~~~~--~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~-------------------------  138 (361)
T 3scy_A           88 TLHLLNTQKTM--GADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASD-------------------------  138 (361)
T ss_dssp             EEEEEEEEECS--SSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSE-------------------------
T ss_pred             cEEEeeEeccC--CCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccce-------------------------
Confidence            432  333322  223456666  788777776 578899999864422111100                         


Q ss_pred             eEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310          688 VSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1103)
Q Consensus       688 ~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~  767 (1103)
                                                                         .+  ...+.        +           
T Consensus       139 ---------------------------------------------------~~--~~~g~--------~-----------  146 (361)
T 3scy_A          139 ---------------------------------------------------VI--EFKGS--------G-----------  146 (361)
T ss_dssp             ---------------------------------------------------EE--ECCCC--------C-----------
T ss_pred             ---------------------------------------------------eE--EccCC--------C-----------
Confidence                                                               00  00000        0           


Q ss_pred             cccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCcee------e---
Q 001310          768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------I---  836 (1103)
Q Consensus       768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~------~---  836 (1103)
                                       +.          ....+...+.+++|+|||+++++++  ++.|.+|++.....      +   
T Consensus       147 -----------------~~----------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~  199 (361)
T 3scy_A          147 -----------------PD----------KERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTK  199 (361)
T ss_dssp             -----------------SC----------TTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEE
T ss_pred             -----------------CC----------ccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeec
Confidence                             00          0001334466788888888666554  57788888764331      1   


Q ss_pred             ----EEecCCCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEEcCCcee--EEEe---ccCCCCEEEEEEccCCCEEEEEeC
Q 001310          837 ----LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEV--ISKL---EGHSKRVTGLVFSDALNILVSSGG  906 (1103)
Q Consensus       837 ----~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~--~~~l---~~h~~~V~~l~~s~dg~~l~s~s~  906 (1103)
                          .....+......++|+| |++++++++ .++.|.+|++.+++.  +..+   ..+......++|+|||++|+++..
T Consensus       200 ~~~~~~~~~~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~  278 (361)
T 3scy_A          200 GTPEAFKVAPGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR  278 (361)
T ss_dssp             EEEEEEECCTTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC
T ss_pred             ccccceecCCCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC
Confidence                11223455678999999 888777776 689999999997754  2333   234456789999999999876665


Q ss_pred             C--CeEEEEEcC--CCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEE--ECCCceEEEEeeCCCC
Q 001310          907 D--AQIFVWDVD--GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIY--EAEELTCLKQWFPISS  978 (1103)
Q Consensus       907 d--g~I~iwd~~--~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iw--d~~~~~~~~~~~~~h~  978 (1103)
                      +  +.|.+|+++  +++......+..  +     ..+..++|+|||++|+++  .++.|.+|  |..+|+........+.
T Consensus       279 ~~~~~i~v~~~~~~~g~~~~~~~~~~--g-----~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~  351 (361)
T 3scy_A          279 LKADGVAIFKVDETNGTLTKVGYQLT--G-----IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKV  351 (361)
T ss_dssp             SSSCEEEEEEECTTTCCEEEEEEEEC--S-----SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEEC
T ss_pred             CCCCEEEEEEEcCCCCcEEEeeEecC--C-----CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeC
Confidence            4  899999996  445333222322  2     257899999999999886  46789996  5557776544222345


Q ss_pred             cCeEEEEEc
Q 001310          979 VPISQATFS  987 (1103)
Q Consensus       979 ~~v~~l~fs  987 (1103)
                      ..+.++.|.
T Consensus       352 ~~p~~v~~~  360 (361)
T 3scy_A          352 DKPVCLKFV  360 (361)
T ss_dssp             SSEEEEEEE
T ss_pred             CCCeEEEEc
Confidence            678888886

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.83  E-value=1.4e-17  Score=186.52  Aligned_cols=300  Identities=13%  Similarity=0.123  Sum_probs=197.0

Q ss_pred             cCCCceEEEEEc----CCCcEEEEEC--CCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310          343 HPVQHTLLLVGT----NVGDTGLWDV--NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1103)
Q Consensus       343 spdg~~llasgs----~d~~v~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~  416 (1103)
                      .+... .+.+|+    .++.|.+|++  .+|+.....                  .. +...+..++|+|||++|++++.
T Consensus        10 ~~~~~-~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~------------------~~-~~~~p~~l~~spdg~~l~~~~~   69 (361)
T 3scy_A           10 TDSEL-TMLVGTYTSGNSKGIYTFRFNEETGESLPLS------------------DA-EVANPSYLIPSADGKFVYSVNE   69 (361)
T ss_dssp             GGGEE-EEEEEECCSSSCCEEEEEEEETTTCCEEEEE------------------EE-ECSCCCSEEECTTSSEEEEEEC
T ss_pred             CCCce-EEEEEeccCCCCCCEEEEEEeCCCCCEEEee------------------cc-cCCCCceEEECCCCCEEEEEEc
Confidence            34443 456664    3567888876  455543221                  11 5667888999999999999987


Q ss_pred             C----CeEEEEEecCC-CccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe------ec--
Q 001310          417 K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF------EG--  483 (1103)
Q Consensus       417 d----~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~------~~--  483 (1103)
                      +    +.|.+|++... ..+........+......+++  +++. ++++...++.|.+|++.+...+..+      .+  
T Consensus        70 ~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~  146 (361)
T 3scy_A           70 FSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSG  146 (361)
T ss_dssp             CSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCC
T ss_pred             cCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCC
Confidence            5    79999999863 223333334445556778888  7773 3444457889999999754433211      11  


Q ss_pred             ------CCCceEEEEeeecCCccEEEEEE-CCCeEEEEEcCCCCe------e-------EEecCCCccEEEEEEccCCCE
Q 001310          484 ------HGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYDSLGA------R-------VDYDAPGLGCTRMAYSANGRR  543 (1103)
Q Consensus       484 ------~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~~~~~------~-------~~~~~~~~~i~~~~~s~dg~~  543 (1103)
                            +...+.+++|+  ++++++++++ .++.|.+|+++....      .       ............++|+|||++
T Consensus       147 ~~~~~~~~~~~~~~~~s--pdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~  224 (361)
T 3scy_A          147 PDKERQTMPHLHCVRIT--PDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKF  224 (361)
T ss_dssp             SCTTTCSSCCEEEEEEC--TTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSE
T ss_pred             CCccccCCCcceEEEEC--CCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCE
Confidence                  12234678885  4777665554 589999999886542      1       222334456789999999999


Q ss_pred             EEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECC--CCe--eEEE
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMN--KVQ--LLTT  615 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~  615 (1103)
                      ++++..   .++.|.+|++.+++.  +..+.....+......++|+|++++|+++..  ++.|.+|++.  +++  .+..
T Consensus       225 l~v~~~---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~  301 (361)
T 3scy_A          225 AYLINE---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGY  301 (361)
T ss_dssp             EEEEET---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEE
T ss_pred             EEEEcC---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeE
Confidence            887763   256799999987755  3333333322345789999999999977665  4899999985  444  3444


Q ss_pred             EcCCCCCCCCceEEEecCCCEEEEEE-CCCeEEEEEcC--CCCeeEec-cccccceeeeEEe
Q 001310          616 IDAGGGLPENPRICFNKNGTLLAVIA-NENRIKILETP--ESNSVDAA-GVLSDNLRKLSVN  673 (1103)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~--~~~~~~~~-~~~~~~i~~~~~~  673 (1103)
                      +..   ...+..++|+|||++|++++ .++.|.+|++.  +++..... ..+...+.|+.|.
T Consensus       302 ~~~---g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~~~~~~p~~v~~~  360 (361)
T 3scy_A          302 QLT---GIHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKDIKVDKPVCLKFV  360 (361)
T ss_dssp             EEC---SSCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCCEECSSEEEEEEE
T ss_pred             ecC---CCCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeecceeeeCCCCeEEEEc
Confidence            443   13468999999999998888 57899996554  55544433 2233455555553

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.83  E-value=4.6e-18  Score=189.58  Aligned_cols=299  Identities=9%  Similarity=0.008  Sum_probs=195.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeEeccc
Q 001310          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       584 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~  662 (1103)
                      +++++++..+++++.++.|++||..+++.+..+..+.. ..+..++|+|+|++++++ ..++.|.+||..+++....+..
T Consensus         5 ~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            5 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCC-CCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45778888899999999999999999999888876531 136889999999876554 4688999999987754432211


Q ss_pred             cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEE
Q 001310          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  742 (1103)
Q Consensus       663 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  742 (1103)
                      ...                              +                                  ......+..++|
T Consensus        84 ~~~------------------------------~----------------------------------~~~~~~~~~~~~   99 (349)
T 1jmx_B           84 SSV------------------------------P----------------------------------GEVGRSMYSFAI   99 (349)
T ss_dssp             CCS------------------------------T----------------------------------TEEEECSSCEEE
T ss_pred             ccc------------------------------c----------------------------------ccccccccceEE
Confidence            000                              0                                  000112334556


Q ss_pred             ecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC
Q 001310          743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG  822 (1103)
Q Consensus       743 s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d  822 (1103)
                      +|+|+++++++.+....                                                     ...+  ...+
T Consensus       100 spdg~~l~~~~~~~~~~-----------------------------------------------------~~~~--~~~~  124 (349)
T 1jmx_B          100 SPDGKEVYATVNPTQRL-----------------------------------------------------NDHY--VVKP  124 (349)
T ss_dssp             CTTSSEEEEEEEEEEEC-----------------------------------------------------SSCE--EECC
T ss_pred             CCCCCEEEEEccccccc-----------------------------------------------------cccc--ccCC
Confidence            66666555554331000                                                     0000  0114


Q ss_pred             CeEEEEEcCCcee---eEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC------------
Q 001310          823 GVISLYIVMTFKT---ILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK------------  887 (1103)
Q Consensus       823 g~i~iwd~~~~~~---~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~------------  887 (1103)
                      +.|.+||+.+++.   +..+. +...+.+++|+| +++ +++++  +.|++||+.+++.+..+..+..            
T Consensus       125 ~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~~~s~-dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (349)
T 1jmx_B          125 PRLEVFSTADGLEAKPVRTFP-MPRQVYLMRAAD-DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLY  199 (349)
T ss_dssp             CEEEEEEGGGGGGBCCSEEEE-CCSSCCCEEECT-TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCC
T ss_pred             CeEEEEECCCccccceeeecc-CCCcccceeECC-CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCcccee
Confidence            7899999988543   33343 334688999999 787 55554  3499999999988877754320            


Q ss_pred             ------------CEEEEEEccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcC-CCCEEEE
Q 001310          888 ------------RVTGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHK-DQTRFLL  953 (1103)
Q Consensus       888 ------------~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~  953 (1103)
                                  ....+++++|+........ ...+..++..+++......- ..      ...+..++|+| ||+++++
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~------~~~~~~~~~sp~dg~~l~~  272 (349)
T 1jmx_B          200 FWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA-DL------TELYFTGLRSPKDPNQIYG  272 (349)
T ss_dssp             CCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE-EC------SSCEEEEEECSSCTTEEEE
T ss_pred             eecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc-cC------CCcceeeEecCCCCCEEEE
Confidence                        3455777766532211111 11122355555543322111 11      12578999999 9999998


Q ss_pred             EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          954 VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       954 ~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      + ++.|.+||+.+++.+..+..+  ..+.+++|+|||++|++++.++.|++||+.+++.+..+.
T Consensus       273 ~-~~~v~~~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          273 V-LNRLAKYDLKQRKLIKAANLD--HTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             E-ESEEEEEETTTTEEEEEEECS--SCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             E-cCeEEEEECccCeEEEEEcCC--CCccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            8 899999999999988775433  357789999999999988889999999999999888776

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.83  E-value=1.2e-18  Score=214.72  Aligned_cols=279  Identities=14%  Similarity=0.119  Sum_probs=186.9

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCc-----cEEEEEECCCCC
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGV-----SVNRVVWSPDGS  409 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-----~V~~~~~spdg~  409 (1103)
                      .....++|+|||+ +++++  |++|++||+.+++....                   +.+|..     ....++|||||+
T Consensus        17 ~~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~Spdg~   74 (740)
T 4a5s_A           17 LKLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSVF-------------------LENSTFDEFGHSINDYSISPDGQ   74 (740)
T ss_dssp             CCCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEEE-------------------ECTTTTTTCCSCCCEEEECTTSS
T ss_pred             ccccccEECCCCc-EEEEc--CCcEEEEECCCCceEEE-------------------EechhhhhhcccccceEECCCCC
Confidence            3567899999997 67776  89999999999986543                   334432     234589999999


Q ss_pred             EEEEEeCC---------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310          410 LLGVAYSK---------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       410 ~las~~~d---------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  480 (1103)
                      +||+++.+         +.+.+||+.+++...    +..|...+...+|||||+  .|+.+. |+.|++||+.+++..+.
T Consensus        75 ~l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~l  147 (740)
T 4a5s_A           75 FILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRI  147 (740)
T ss_dssp             EEEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEEC
T ss_pred             EEEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEE
Confidence            99999876         556799999987443    557788899999999999  466664 78999999988875542


Q ss_pred             -eecCCCce-----------------EEEEeeecCCccEEEEEECCCe-EEEEEcCCCCeeEEecCCCccEEEEEEccCC
Q 001310          481 -FEGHGAPV-----------------YSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANG  541 (1103)
Q Consensus       481 -~~~~~~~v-----------------~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg  541 (1103)
                       ..++...+                 .++.|  ++||+.|+.++.|.+ +.+|++.......   .+...+..+.+.+.|
T Consensus       148 t~~g~~~~~~~g~~~~v~~ee~~~~~~~~~w--SpDg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G  222 (740)
T 4a5s_A          148 TWTGKEDIIYNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAG  222 (740)
T ss_dssp             CSCCBTTTEEESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTT
T ss_pred             cCCCCccceecCcccccccchhcCCCcceEE--CCCCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCc
Confidence             22333222                 23556  568889998876655 8888754221110   123456667777766


Q ss_pred             CEEEEEecCCCCceeEEEEeCCC---Ce--eEEEEeccc---ccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCC
Q 001310          542 RRLFSCGTSKEGESFLVEWNESE---GA--IKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK  609 (1103)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~  609 (1103)
                      ..        .....|++||+.+   ++  ....+....   .+...+..++|+|||+.++...    .+..|++||+.+
T Consensus       223 ~~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~t  294 (740)
T 4a5s_A          223 AV--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDE  294 (740)
T ss_dssp             SC--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEET
T ss_pred             Cc--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCC
Confidence            43        1244599999998   73  222333210   1236789999999998766643    234799999998


Q ss_pred             Ce----eE--EEE--cCCCCCCC---CceEEEecCCCEEE-EEEC-C--CeEEEEEcCCCC
Q 001310          610 VQ----LL--TTI--DAGGGLPE---NPRICFNKNGTLLA-VIAN-E--NRIKILETPESN  655 (1103)
Q Consensus       610 ~~----~~--~~~--~~~~~~~~---v~~v~~s~~g~~l~-~~~~-d--g~i~iw~~~~~~  655 (1103)
                      ++    +.  ..+  ..+.....   ...++|+|||+.++ ..+. +  ..|.+|+..++.
T Consensus       295 g~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~~  355 (740)
T 4a5s_A          295 SSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD  355 (740)
T ss_dssp             TTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSS
T ss_pred             CccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCCc
Confidence            87    21  111  22221111   23789999999887 6654 3  457777776553

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.83  E-value=5.4e-19  Score=211.94  Aligned_cols=236  Identities=16%  Similarity=0.172  Sum_probs=176.0

Q ss_pred             CccEEEEEECCCCCEEEEEeC-CCeEEEEEecCCCccccceEecccc-ccEEEEEEecCCCceEEEEEcC---CCceEEE
Q 001310          396 GVSVNRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---DKTIKVW  470 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~~---d~~i~iw  470 (1103)
                      ..+|.+++|||||++||+++. ||++.||++.+++..    .+..|. ..+..++|+|| +  ++++++.   +...++|
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~----~lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~   93 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETV----KLNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF   93 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEE----ECCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcE----eeecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence            457999999999999999887 999999999776532    344555 68999999999 5  6776664   4555665


Q ss_pred             eCCC---CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          471 DAVT---GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       471 d~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      .+..   +... .+.... .+...+|++++++..+++++.++.. +||+.+++.......+.   .+++|||||++++++
T Consensus        94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~  167 (582)
T 3o4h_A           94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELARLPG---FGFVSDIRGDLIAGL  167 (582)
T ss_dssp             EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred             EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence            5433   3322 443222 3445677777665566666555554 99998876655443333   788999999999988


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCeeEEEEcCCCCCCCC
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGLPEN  625 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v  625 (1103)
                      +.+..+...|++||+.+++.. .+..+.   ..+..++|+|||+.|+++..++  .|++||+.+++.. .+..+.  ..+
T Consensus       168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~---~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~--~~~  240 (582)
T 3o4h_A          168 GFFGGGRVSLFTSNLSSGGLR-VFDSGE---GSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPS--KDF  240 (582)
T ss_dssp             EEEETTEEEEEEEETTTCCCE-EECCSS---CEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSC--SHH
T ss_pred             EEcCCCCeEEEEEcCCCCCce-EeecCC---CccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCC--cCh
Confidence            765444477999999988765 555555   6789999999999999888888  8999999998877 554332  235


Q ss_pred             ceEE--------EecCCCEEEEEECCCeEEEEEc
Q 001310          626 PRIC--------FNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       626 ~~v~--------~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      ..++        |+|||.++++++.++.+++|++
T Consensus       241 ~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~  274 (582)
T 3o4h_A          241 SSYRPTAITWLGYLPDGRLAVVARREGRSAVFID  274 (582)
T ss_dssp             HHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred             hhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence            5666        9999999999999999999998

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.82  E-value=1.2e-17  Score=205.82  Aligned_cols=364  Identities=9%  Similarity=0.004  Sum_probs=239.0

Q ss_pred             ceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCC-CCC--ceEEEecCCCEEEEEECC---------CeEE
Q 001310          580 SVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL-PEN--PRICFNKNGTLLAVIANE---------NRIK  647 (1103)
Q Consensus       580 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v--~~v~~s~~g~~l~~~~~d---------g~i~  647 (1103)
                      ....+.|+|++.+++++  |++|++||+.+++....+..+... ..+  ..++|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35578999999888776  899999999999988777765421 122  348999999999998876         5667


Q ss_pred             EEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeee
Q 001310          648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL  727 (1103)
Q Consensus       648 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  727 (1103)
                      +||+.+++.. .+..+...+...+|+                      |||+.++.+ .++.|.+|+...+...   .+.
T Consensus        96 ~~d~~~~~~~-~l~~~~~~~~~~~~S----------------------PdG~~la~~-~~~~i~~~~~~~~~~~---~lt  148 (740)
T 4a5s_A           96 IYDLNKRQLI-TEERIPNNTQWVTWS----------------------PVGHKLAYV-WNNDIYVKIEPNLPSY---RIT  148 (740)
T ss_dssp             EEETTTTEEC-CSSCCCTTEEEEEEC----------------------SSTTCEEEE-ETTEEEEESSTTSCCE---ECC
T ss_pred             EEECCCCcEE-EcccCCCcceeeEEC----------------------CCCCEEEEE-ECCeEEEEECCCCceE---EEc
Confidence            9999988654 355555666666775                      788888777 4578999998754322   111


Q ss_pred             ccCccccc-----------------cEEEEEEecCCcEEEEeecC-ceEEEeecCCCccccccccccccCCeeecCCCCC
Q 001310          728 LPSKVKAN-----------------KISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGP  789 (1103)
Q Consensus       728 ~~~~~~~~-----------------~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~  789 (1103)
                      .  .++..                 ....+.|||||+.|+....| +.+.+|++.....                   +.
T Consensus       149 ~--~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~-------------------~~  207 (740)
T 4a5s_A          149 W--TGKEDIIYNGITDWVYEEEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEYSFYSD-------------------ES  207 (740)
T ss_dssp             S--CCBTTTEEESBCCHHHHHHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEEEECCS-------------------TT
T ss_pred             C--CCCccceecCcccccccchhcCCCcceEECCCCCEEEEEEEcccCCceEEEEeecC-------------------CC
Confidence            1  11211                 22358999999999988765 4477776532110                   00


Q ss_pred             ceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCC---ce--eeEEec------CCCCCeeEEEEcCCCCCE
Q 001310          790 QFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT---FK--TILTIM------PPSPTATSLAFNPHDNNV  858 (1103)
Q Consensus       790 ~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~---~~--~~~~~~------~~~~~i~~l~~s~~d~~~  858 (1103)
                                .+...+..+.+.+.|...   ...+|.+||+.+   ++  ....+.      ++...+..++|+| |+++
T Consensus       208 ----------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wsp-dg~~  273 (740)
T 4a5s_A          208 ----------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWAT-QERI  273 (740)
T ss_dssp             ----------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEE-TTEE
T ss_pred             ----------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeC-CCeE
Confidence                      133455666776666421   123689999998   73  233343      2677899999999 7886


Q ss_pred             EEEEeC----CCeEEEEEcCCce----eE--EEe--ccCCCCEE-----EEEEccCCCEEE-EEeC-C--CeEEEEEcCC
Q 001310          859 IAIGMD----DSTILIYNARSSE----VI--SKL--EGHSKRVT-----GLVFSDALNILV-SSGG-D--AQIFVWDVDG  917 (1103)
Q Consensus       859 lasg~~----dg~v~iwd~~~~~----~~--~~l--~~h~~~V~-----~l~~s~dg~~l~-s~s~-d--g~I~iwd~~~  917 (1103)
                      ++....    +..|++||+.+++    +.  ..+  .+|.+.|.     .++|||||+.|+ ..+. +  ..|++||+.+
T Consensus       274 ~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~  353 (740)
T 4a5s_A          274 SLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDK  353 (740)
T ss_dssp             EEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTC
T ss_pred             EEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCC
Confidence            665532    3489999999887    22  222  44665554     789999999887 6654 3  4688899987


Q ss_pred             CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE-EeC-------CeEEEEECCCceEEEEeeC---CCCcCeEEEEE
Q 001310          918 WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL-VHE-------THLAIYEAEELTCLKQWFP---ISSVPISQATF  986 (1103)
Q Consensus       918 ~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~-~~d-------~~v~iwd~~~~~~~~~~~~---~h~~~v~~l~f  986 (1103)
                      ++..     +...+..    .+..+. ++|++.|+. +..       ..|+..++..+.....+..   +....+..+.|
T Consensus       354 ~~~~-----~lT~g~~----~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g~~~~~~lt~~~~~~~~~~~~~~~  423 (740)
T 4a5s_A          354 KDCT-----FITKGTW----EVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLIDYTKVTCLSCELNPERCQYYSVSF  423 (740)
T ss_dssp             SSCE-----ESCCSSS----CEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTEEEEEEESSTTTSTTTBCBEEEEE
T ss_pred             CceE-----ecccCCE----EEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCCCCcceeeccccCCCCCceEEEEE
Confidence            6532     2233322    344443 355777765 432       2566666665544322221   23467889999


Q ss_pred             ccCCCEEEEEecC---CcEEEEeCCCceeEEeec
Q 001310          987 SCDCRMVFTSFVD---GTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       987 s~dg~~l~t~~~d---g~v~vWd~~~~~~~~~~~ 1017 (1103)
                      |||+++++.....   ..+.+++..+++....+.
T Consensus       424 S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~  457 (740)
T 4a5s_A          424 SKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (740)
T ss_dssp             CTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence            9999987755433   468889998887654443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.82  E-value=4.5e-18  Score=189.68  Aligned_cols=283  Identities=11%  Similarity=0.059  Sum_probs=195.0

Q ss_pred             eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE-EeC
Q 001310          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV-AYS  416 (1103)
Q Consensus       338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las-~~~  416 (1103)
                      +.++++++++ ++++++.+++|.+||+.+++.+.....                  +....+..++|+|||+++++ +..
T Consensus         3 ~g~~~~~~~~-~~v~~~~~~~v~~~d~~~~~~~~~~~~------------------~~~~~~~~~~~s~dg~~~~v~~~~   63 (349)
T 1jmx_B            3 TGPALKAGHE-YMIVTNYPNNLHVVDVASDTVYKSCVM------------------PDKFGPGTAMMAPDNRTAYVLNNH   63 (349)
T ss_dssp             -CCCCCTTCE-EEEEEETTTEEEEEETTTTEEEEEEEC------------------SSCCSSCEEEECTTSSEEEEEETT
T ss_pred             ccccccCCCE-EEEEeCCCCeEEEEECCCCcEEEEEec------------------CCCCCCceeEECCCCCEEEEEeCC
Confidence            3567888887 788999999999999999987654211                  12225778999999997654 456


Q ss_pred             CCeEEEEEecCCCccccceEec-cc-----cccEEEEEEecCCCceEEEEEcCC------------CceEEEeCCCCce-
Q 001310          417 KHIVQLYAYHGGSDARQQLEID-AH-----VGNVNDLAFSAPCKQISVITCGDD------------KTIKVWDAVTGSR-  477 (1103)
Q Consensus       417 d~~i~iwd~~~~~~~~~~~~l~-~h-----~~~v~~~~~s~d~~~~~l~s~~~d------------~~i~iwd~~~~~~-  477 (1103)
                      ++.|.+||+.+++...   .+. ++     ...+.+++|+|||+  .+++++.+            +.|.+||+.+++. 
T Consensus        64 ~~~i~~~d~~t~~~~~---~~~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~  138 (349)
T 1jmx_B           64 YGDIYGIDLDTCKNTF---HANLSSVPGEVGRSMYSFAISPDGK--EVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA  138 (349)
T ss_dssp             TTEEEEEETTTTEEEE---EEESCCSTTEEEECSSCEEECTTSS--EEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGB
T ss_pred             CCcEEEEeCCCCcEEE---EEEcccccccccccccceEECCCCC--EEEEEcccccccccccccCCCeEEEEECCCcccc
Confidence            8899999999886543   222 22     33478999999999  56666654            8999999988543 


Q ss_pred             --eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC---------------------c---c
Q 001310          478 --TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------------------L---G  531 (1103)
Q Consensus       478 --~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------------------~---~  531 (1103)
                        +..+. +...+.+++|++  ++. +++++  +.|.+||..+++....+....                     .   .
T Consensus       139 ~~~~~~~-~~~~~~~~~~s~--dg~-l~~~~--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  212 (349)
T 1jmx_B          139 KPVRTFP-MPRQVYLMRAAD--DGS-LYVAG--PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSM  212 (349)
T ss_dssp             CCSEEEE-CCSSCCCEEECT--TSC-EEEES--SSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEE
T ss_pred             ceeeecc-CCCcccceeECC--CCc-EEEcc--CcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEe
Confidence              34444 334577788854  666 55544  349999998887766554332                     0   2


Q ss_pred             EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE-EecccccCCceEEEEEcC-CCCEEEEEeCCCcEEEEECCC
Q 001310          532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQLQHNSVSVVHFDT-AKDQILAAGDDHVIKIWDMNK  609 (1103)
Q Consensus       532 i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~  609 (1103)
                      ...+++++++........   ....+..+|..+++.... +...   ...+..++|+| ++++++++  ++.|++||+.+
T Consensus       213 ~~~~~~~~d~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~  284 (349)
T 1jmx_B          213 LYTIARFKDDKQDPATAD---LLYGYLSVDLKTGKTHTQEFADL---TELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQ  284 (349)
T ss_dssp             EEEEEEC-------CCCE---EEEEEEEEETTTCCEEEEEEEEC---SSCEEEEEECSSCTTEEEEE--ESEEEEEETTT
T ss_pred             eeeeeecCCCcCCccccc---cceeEEEEeccCCcEEecccccC---CCcceeeEecCCCCCEEEEE--cCeEEEEECcc
Confidence            345666665532211100   011233466666653221 1122   35788999999 99999888  88999999999


Q ss_pred             CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecc
Q 001310          610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       610 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                      ++.+..+....   .+.+++|+|+|++|++++.++.|.+||..+++.+..+.
T Consensus       285 ~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~~~~~~~  333 (349)
T 1jmx_B          285 RKLIKAANLDH---TYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  333 (349)
T ss_dssp             TEEEEEEECSS---CCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEEcCCC---CccceEECCCCCEEEEecCCCeEEEEeccccceeeeee
Confidence            99888876542   36799999999999888889999999999887776654

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.81  E-value=1.5e-18  Score=197.85  Aligned_cols=221  Identities=12%  Similarity=0.038  Sum_probs=160.4

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE-
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-  412 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la-  412 (1103)
                      ...+..+++++++. ++++|+.++ ++||+...-......   ..+.. ....+.......|...|.+++|+|||++|| 
T Consensus        36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav  109 (434)
T 2oit_A           36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKP---GDDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA  109 (434)
T ss_dssp             CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCT---TCCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred             CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhccc---ccCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence            34689999999998 678888777 899886421110000   00000 000000011124677899999999999999 


Q ss_pred             ---EEeCCCeEEEEEecCC--------CccccceEeccccccEEEEEEecC-CCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310          413 ---VAYSKHIVQLYAYHGG--------SDARQQLEIDAHVGNVNDLAFSAP-CKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       413 ---s~~~d~~i~iwd~~~~--------~~~~~~~~l~~h~~~v~~~~~s~d-~~~~~l~s~~~d~~i~iwd~~~~~~~~~  480 (1103)
                         +|+.|++|+|||+.++        +.+.....+.+|...|.+++|+|+ +.  +|++++.||+|++||+.++..+..
T Consensus       110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~  187 (434)
T 2oit_A          110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA  187 (434)
T ss_dssp             EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred             EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence               7788999999999875        222223456789999999999998 56  899999999999999999988777


Q ss_pred             eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-------CccEEEEEEccCCCEEEEEecCC--
Q 001310          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-------GLGCTRMAYSANGRRLFSCGTSK--  551 (1103)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-------~~~i~~~~~s~dg~~l~~~~~~~--  551 (1103)
                      ..+|...|.+++|++  ++.+|++|+.||.|++||.+ +.....+..+       ...+.+++|++++.++++.....  
T Consensus       188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~  264 (434)
T 2oit_A          188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT  264 (434)
T ss_dssp             EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred             ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence            788999999999965  67899999999999999998 4444444332       23799999999988887654321  


Q ss_pred             -CCceeEEEEeCCCC
Q 001310          552 -EGESFLVEWNESEG  565 (1103)
Q Consensus       552 -~~~~~i~iwd~~~~  565 (1103)
                       +....+++|++...
T Consensus       265 ~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          265 LETSPDVVMALLPKK  279 (434)
T ss_dssp             SSSCCEEEEEECCCT
T ss_pred             cCCCCceEEEEeccC
Confidence             11234889998764

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.80  E-value=1.3e-18  Score=198.20  Aligned_cols=199  Identities=13%  Similarity=0.114  Sum_probs=151.7

Q ss_pred             CCCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee----------eEE-----ecCCCCCeeEEEEcCCCCCEEE----EE
Q 001310          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKT----------ILT-----IMPPSPTATSLAFNPHDNNVIA----IG  862 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~----------~~~-----~~~~~~~i~~l~~s~~d~~~la----sg  862 (1103)
                      ...+..+++++++.++++++.+.+++|+......          +..     ...+...|++++|+| ++++||    +|
T Consensus        36 ~~~~n~lavs~~~~~l~~~~~dgv~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp-dg~~lav~~~sg  114 (434)
T 2oit_A           36 KERSSLLAVSNKYGLVFAGGASGLQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSC-DNLTLSACMMSS  114 (434)
T ss_dssp             CSCCBCEEEETTTTEEEEEETTEEEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECT-TSCEEEEEEEET
T ss_pred             CCCccEEEEecCCCEEEEECCCEEEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcC-CCCEEEEEEecc
Confidence            4467899999999999999865599988642111          111     112456799999999 889999    78


Q ss_pred             eCCCeEEEEEcCCc--------e---eEEEeccCCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC
Q 001310          863 MDDSTILIYNARSS--------E---VISKLEGHSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD  930 (1103)
Q Consensus       863 ~~dg~v~iwd~~~~--------~---~~~~l~~h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~  930 (1103)
                      +.|+.|+|||+.++        +   .+..+.+|.+.|.+++|+|+ +.+|++++.||+|++||+.++...     ....
T Consensus       115 s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~-----~~~~  189 (434)
T 2oit_A          115 EYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKV-----CATL  189 (434)
T ss_dssp             TTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEE-----EEEE
T ss_pred             CCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcce-----eecc
Confidence            89999999998765        2   24566789999999999998 899999999999999999986422     1122


Q ss_pred             CcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeC------CCCcCeEEEEEccCCCEEEEEe-cCC--
Q 001310          931 GVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFP------ISSVPISQATFSCDCRMVFTSF-VDG-- 1000 (1103)
Q Consensus       931 ~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~------~h~~~v~~l~fs~dg~~l~t~~-~dg-- 1000 (1103)
                      +|..   .|.+++|+|+|++|+++ .|+.|++||++ ++....+..      .|...|.+++|++++.++++.+ .||  
T Consensus       190 ~~~~---~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~~  265 (434)
T 2oit_A          190 PSTV---AVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGTL  265 (434)
T ss_dssp             CGGG---CEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCCS
T ss_pred             CCCC---ceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCcc
Confidence            2333   79999999999999995 78999999998 555444221      1234899999999998876543 443  


Q ss_pred             ----cEEEEeCCCc
Q 001310         1001 ----TLSIHEASNL 1010 (1103)
Q Consensus      1001 ----~v~vWd~~~~ 1010 (1103)
                          .+++|++...
T Consensus       266 ~~~~~v~i~~l~~~  279 (434)
T 2oit_A          266 ETSPDVVMALLPKK  279 (434)
T ss_dssp             SSCCEEEEEECCCT
T ss_pred             CCCCceEEEEeccC
Confidence                3899999865

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.79  E-value=8e-18  Score=190.76  Aligned_cols=294  Identities=11%  Similarity=0.017  Sum_probs=198.6

Q ss_pred             ccCCCccEEE-----EEECCCCCEEEEEeC-CC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC
Q 001310          392 VRDPGVSVNR-----VVWSPDGSLLGVAYS-KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD  463 (1103)
Q Consensus       392 ~~~h~~~V~~-----~~~spdg~~las~~~-d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~  463 (1103)
                      +..|...+..     .+|||||++||+++. ++  .|.+||+.+++...   ...++...+..++|+|||+  .|+.++.
T Consensus        26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~  100 (388)
T 3pe7_A           26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD  100 (388)
T ss_dssp             CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred             ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence            5567666666     899999999999987 66  48888998876443   2345555555778999999  7888888


Q ss_pred             CCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEE----------------------CCCeEEEEEcCCCCe
Q 001310          464 DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS----------------------VDGKIKAWLYDSLGA  521 (1103)
Q Consensus       464 d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~----------------------~dg~i~iwd~~~~~~  521 (1103)
                      ++.|++||+.+++....+..+...+....+..++++.+++...                      .+..|.+||+.+++.
T Consensus       101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~  180 (388)
T 3pe7_A          101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES  180 (388)
T ss_dssp             TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred             CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence            8999999999999887777777766666665567888877432                      346799999988765


Q ss_pred             eEEecCCCccEEEEEEcc-CCCEEEEEecCCC--CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC
Q 001310          522 RVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKE--GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD  598 (1103)
Q Consensus       522 ~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~  598 (1103)
                      .... .+...+..++|+| ||+.|+.+.....  ....|+++|...++.........  ...+...+|+|||+.|+..+.
T Consensus       181 ~~l~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~  257 (388)
T 3pe7_A          181 TVIL-QENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE--GESCTHEFWVPDGSALVYVSY  257 (388)
T ss_dssp             EEEE-EESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT--TEEEEEEEECTTSSCEEEEEE
T ss_pred             EEee-cCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC--CcccccceECCCCCEEEEEec
Confidence            4433 3455688999999 9999988775321  14468899987665443333221  125778899999998866443


Q ss_pred             -CC----cEEEEECCCCeeEEEEcCCCC--C-CCCceEEEecCCCEEEEE---------ECCCeEEEEEcCCCCeeEecc
Q 001310          599 -DH----VIKIWDMNKVQLLTTIDAGGG--L-PENPRICFNKNGTLLAVI---------ANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       599 -dg----~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~g~~l~~~---------~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                       ++    .|++||+.+++..........  . ......+|+|||+.|+..         ..+..|.+||+.+++.. .+.
T Consensus       258 ~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~-~l~  336 (388)
T 3pe7_A          258 LKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQH-RVA  336 (388)
T ss_dssp             ETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEEE-EEE
T ss_pred             CCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCceE-Eec
Confidence             22    399999999875433222210  0 012345899999988864         44668999999887543 333


Q ss_pred             cccc-----------ceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeec-ccccccccccc
Q 001310          662 VLSD-----------NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVE-AENKSEVEKPL  716 (1103)
Q Consensus       662 ~~~~-----------~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~-~d~~i~~w~~~  716 (1103)
                      .+..           .+..++|                      +|||+.++..+ .++...+|.+.
T Consensus       337 ~~~~~~~~~~~~~~~~~~~~~~----------------------spDg~~l~~~s~~~g~~~l~~~~  381 (388)
T 3pe7_A          337 RHDTSWKVFEGDRQVTHPHPSF----------------------TPDDKQILFTSDVHGKPALYLAT  381 (388)
T ss_dssp             ECCCCCCCBTTBSSTTCCCCEE----------------------CTTSSEEEEEECTTSSCEEEEEE
T ss_pred             cccCcccccccccccCCCCccC----------------------CCCCCEEEEEecCCCceeEEEEE
Confidence            3322           2333344                      47787776544 46666677654

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.79  E-value=4.6e-17  Score=182.20  Aligned_cols=248  Identities=8%  Similarity=0.099  Sum_probs=168.4

Q ss_pred             CCCeeEEEEecCCCEEEEEcCCeEEEEEcC-CceeeEEecC-CCCCeeEEEEcCCCCC--EEEEEe-------------C
Q 001310          802 QEAVPCFALSKNDAYLFSASGGVISLYIVM-TFKTILTIMP-PSPTATSLAFNPHDNN--VIAIGM-------------D  864 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~-~~~~~~~~~~-~~~~i~~l~~s~~d~~--~lasg~-------------~  864 (1103)
                      ...+..++++|||++|++++.+.|.+|++. +++....... ..+...+++|+| +++  ++++++             .
T Consensus        39 ~~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~  117 (365)
T 1jof_A           39 DEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKF  117 (365)
T ss_dssp             TCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSS
T ss_pred             CCCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecC
Confidence            346788999999999988875599999997 7776543321 112356789999 787  455553             6


Q ss_pred             CCeEEEEEcC-CceeEEEec----cCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcC-CCceeeeeeeecCCCcccCCC
Q 001310          865 DSTILIYNAR-SSEVISKLE----GHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAP  937 (1103)
Q Consensus       865 dg~v~iwd~~-~~~~~~~l~----~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~  937 (1103)
                      +|.+.+|++. +++....+.    .+...+.+++|+|||++|++++. ++.|++|+++ +++......+.... +   ..
T Consensus       118 ~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~-~---g~  193 (365)
T 1jof_A          118 AGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD-P---GD  193 (365)
T ss_dssp             CCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS-T---TC
T ss_pred             CceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC-C---CC
Confidence            8999999997 466544443    25567999999999998887764 6799999998 67643322222211 0   12


Q ss_pred             CceEEEEcCCCCEEEEE--eCCeEEEEECC--CceEEE---Ee--eC----CCCc------CeEEEE-EccCCCEEEEEe
Q 001310          938 SETHIQFHKDQTRFLLV--HETHLAIYEAE--ELTCLK---QW--FP----ISSV------PISQAT-FSCDCRMVFTSF  997 (1103)
Q Consensus       938 ~v~~l~fs~dg~~l~~~--~d~~v~iwd~~--~~~~~~---~~--~~----~h~~------~v~~l~-fs~dg~~l~t~~  997 (1103)
                      .+..++|+|||++|+++  .++.|.+|+++  +|+...   .+  ..    +|..      .+..++ |||||++|++++
T Consensus       194 ~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~  273 (365)
T 1jof_A          194 HPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASS  273 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEE
T ss_pred             CCCEeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEEC
Confidence            58899999999999885  36789999865  565421   11  21    1222      588999 999999988776


Q ss_pred             cCC------cEEEEeCC-CceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCC--CCcEEEEEec-CCcEE
Q 001310          998 VDG------TLSIHEAS-NLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPL--KPTQFAVGLT-NGEVY 1067 (1103)
Q Consensus       998 ~dg------~v~vWd~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~-dg~v~ 1067 (1103)
                      .+.      +|.+|++. ++++........                .+.....  .++++|.  ++++|++++. ++.|.
T Consensus       274 ~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~----------------~~~~~~~--~~a~sp~~~dg~~l~v~~~~~~~v~  335 (365)
T 1jof_A          274 RANKFELQGYIAGFKLRDCGSIEKQLFLSP----------------TPTSGGH--SNAVSPCPWSDEWMAITDDQEGWLE  335 (365)
T ss_dssp             EESSTTSCCEEEEEEECTTSCEEEEEEEEE----------------CSSCCTT--CCCEEECTTCTTEEEEECSSSCEEE
T ss_pred             CCCCCCCCCeEEEEEECCCCCEEEeeeeee----------------cCCCCcc--cceecCCCcCCCEEEEEEcCCCeEE
Confidence            432      89999996 666543111000                0111111  3466772  3788888876 48999


Q ss_pred             EEccC
Q 001310         1068 VIEPN 1072 (1103)
Q Consensus      1068 vw~~~ 1072 (1103)
                      +|++.
T Consensus       336 v~~~~  340 (365)
T 1jof_A          336 IYRWK  340 (365)
T ss_dssp             EEEEE
T ss_pred             EEEEc
Confidence            99984

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=1.7e-16  Score=176.26  Aligned_cols=296  Identities=11%  Similarity=0.118  Sum_probs=200.8

Q ss_pred             CCCceEEEEE-----cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe---
Q 001310          344 PVQHTLLLVG-----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY---  415 (1103)
Q Consensus       344 pdg~~llasg-----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~---  415 (1103)
                      +++++++++.     ..|+.|.+||..+++.+..                   +..+..+  .++|||||++|+++.   
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spdg~~lyv~~~~~   71 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGM-------------------VPTAFNG--HVQVSNDGKKIYTMTTYH   71 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEE-------------------EECCEEE--EEEECTTSSEEEEEEEEE
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEE-------------------ecCCCCC--ceEECCCCCEEEEEEecc
Confidence            3566544443     2378999999999987654                   2234444  899999999999986   


Q ss_pred             -------CCCeEEEEEecCCCccccceEecc---ccccEEEEEEecCCCceEEEEEc--CCCceEEEeCCCCceeEE-ee
Q 001310          416 -------SKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYS-FE  482 (1103)
Q Consensus       416 -------~d~~i~iwd~~~~~~~~~~~~l~~---h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~-~~  482 (1103)
                             .+++|.+||..+++.+..+.....   +......++|+|||+  +|+++.  .+++|.+||+.+++.+.. +.
T Consensus        72 ~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~--~l~v~n~~~~~~v~v~d~~~~~~~~~~i~  149 (361)
T 2oiz_A           72 ERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGK--FIVLQNASPATSIGIVDVAKGDYVEDVTA  149 (361)
T ss_dssp             TTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSS--EEEEEEESSSEEEEEEETTTTEEEEEEGG
T ss_pred             cccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCC--EEEEECCCCCCeEEEEECCCCcEEEEEec
Confidence                   357899999998776553322111   223466899999999  455554  368999999999998887 54


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-E------ecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-D------YDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1103)
                      ... . ..+.+.|.. ...+++.+.||.+.+|+++...... .      +.....+ ..+.+++++..++..+.    ++
T Consensus       150 ~~~-~-~~v~~~p~~-~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~----~~  221 (361)
T 2oiz_A          150 AAG-C-WSVIPQPNR-PRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDP-IFIAPALDKDKAHFVSY----YG  221 (361)
T ss_dssp             GTT-E-EEEEECTTS-SSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSC-BCSCCEECSSEEEEEBT----TS
T ss_pred             CCC-c-ceeEEcCCC-CeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCc-eEEEecccCCEEEEEeC----CC
Confidence            322 1 223444432 3678889999999999986533222 1      1111222 23345677877776654    45


Q ss_pred             eEEEEeCCCCee--EEEEeccc---cc----CCceEEEEEcCCCCEEEEEeC-----------CCcEEEEECCCCeeEEE
Q 001310          556 FLVEWNESEGAI--KRTYQGLQ---LQ----HNSVSVVHFDTAKDQILAAGD-----------DHVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       556 ~i~iwd~~~~~~--~~~~~~~~---~~----~~~v~~~~~~~~~~~l~~~~~-----------dg~i~iwd~~~~~~~~~  615 (1103)
                      .++++|+..+..  ...+....   ..    ......++|+|++++++++..           .+.|.+||+.+++.+..
T Consensus       222 ~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~  301 (361)
T 2oiz_A          222 NVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVAR  301 (361)
T ss_dssp             EEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEE
T ss_pred             eEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEE
Confidence            699999875532  22221100   00    011123689999988887643           35899999999999999


Q ss_pred             EcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCC--CeeEeccccccceeeeEEecC
Q 001310          616 IDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPI  675 (1103)
Q Consensus       616 ~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~  675 (1103)
                      +..+.    +.+++|+|||++|+++.. +.|.+||..++  +.+..+.........++++|+
T Consensus       302 i~~~~----p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~  358 (361)
T 2oiz_A          302 IPGRD----ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPV  358 (361)
T ss_dssp             EECTT----CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCC
T ss_pred             EecCC----eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEeccCCCCcEEEEecCC
Confidence            98763    789999999999998887 99999999999  888776555566666777654

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.77  E-value=4.5e-17  Score=185.19  Aligned_cols=299  Identities=10%  Similarity=-0.007  Sum_probs=193.5

Q ss_pred             ccceeEecccCCcC-----ceEEEecCCCceEEEEEcCC--CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCC
Q 001310          323 PKTVAQTLIEGSSS-----PMSMDFHPVQHTLLLVGTNV--GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP  395 (1103)
Q Consensus       323 p~~~~~~l~~h~~~-----V~~v~~spdg~~llasgs~d--~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h  395 (1103)
                      ....++.|..+...     +..++|||||++++++...+  ..|.+||+.+++...                    +..+
T Consensus        19 ~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~--------------------l~~~   78 (396)
T 3c5m_A           19 TQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ--------------------LTEG   78 (396)
T ss_dssp             TCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE--------------------CCCS
T ss_pred             CCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE--------------------eecC
Confidence            34455666655433     88999999999755555443  368888998876543                    2223


Q ss_pred             Ccc-EEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEE-------------------EEEecCCCc
Q 001310          396 GVS-VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND-------------------LAFSAPCKQ  455 (1103)
Q Consensus       396 ~~~-V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~-------------------~~~s~d~~~  455 (1103)
                      ... ...+.|||||++|++++.++.|++||+.+++...   ....+......                   ++|+|+++.
T Consensus        79 ~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~  155 (396)
T 3c5m_A           79 KGDNTFGGFISTDERAFFYVKNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW  155 (396)
T ss_dssp             SCBCTTTCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH
T ss_pred             CCCccccceECCCCCEEEEEEcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc
Confidence            333 3337899999999999999999999999876432   22223222222                   356778773


Q ss_pred             eEEEEE-----cCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC------CeEEEEEcCCCCeeEE
Q 001310          456 ISVITC-----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGARVD  524 (1103)
Q Consensus       456 ~~l~s~-----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~~~~  524 (1103)
                        ++..     ..+..|.+||+.+++..... .+...+..+.|++. ++..|+..+.+      ..|.+||++.......
T Consensus       156 --~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l  231 (396)
T 3c5m_A          156 --EKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKI  231 (396)
T ss_dssp             --HHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEES
T ss_pred             --eeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEe
Confidence              3332     45678999999988765544 46677888888652 45556665543      3588888876543332


Q ss_pred             ecCC-CccEEEEEEccCCCEEEEEecC-CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcC-CCCEEEEEe----
Q 001310          525 YDAP-GLGCTRMAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT-AKDQILAAG----  597 (1103)
Q Consensus       525 ~~~~-~~~i~~~~~s~dg~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----  597 (1103)
                      .... ...+..++|+|||++|+.++.. +...+.|++||+.+++....... .    ... +.|+| +++.+++++    
T Consensus       232 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~-~----~~~-~~~s~~dg~~l~~~~~~~p  305 (396)
T 3c5m_A          232 KEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEVMVM-P----PCS-HLMSNFDGSLMVGDGCDAP  305 (396)
T ss_dssp             SCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEEEEC-C----SEE-EEEECSSSSEEEEEECCC-
T ss_pred             eccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEeeeC-C----CCC-CCccCCCCceEEEecCCcc
Confidence            2221 3357889999999988776543 21225599999998876543322 1    123 88999 999888754    


Q ss_pred             ------------CCCcEEEEECCCCeeEEEEcCCCCC--------CCCceEEEecCCCEEEEEEC-CCeEEEE--EcCCC
Q 001310          598 ------------DDHVIKIWDMNKVQLLTTIDAGGGL--------PENPRICFNKNGTLLAVIAN-ENRIKIL--ETPES  654 (1103)
Q Consensus       598 ------------~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~~~~~-dg~i~iw--~~~~~  654 (1103)
                                  .++.|++||+.+++...........        ..+..++|+|||+.|+.++. ++...+|  ++.++
T Consensus       306 ~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~  385 (396)
T 3c5m_A          306 VDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPES  385 (396)
T ss_dssp             ---------CCCCCCEEEEEETTTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTT
T ss_pred             eeeccccccccCCCCcEEEEecccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccc
Confidence                        3478999999888754333222100        02466899999999887775 4554555  44444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.77  E-value=6.6e-16  Score=171.54  Aligned_cols=313  Identities=10%  Similarity=0.097  Sum_probs=211.6

Q ss_pred             CccEEEEEE------CCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec------CCCCceeEEEEeCCCC
Q 001310          498 NIHFIFSIS------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT------SKEGESFLVEWNESEG  565 (1103)
Q Consensus       498 ~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~------~~~~~~~i~iwd~~~~  565 (1103)
                      ++.+++...      .|+.|.+||..+++....+.....+  .++|+|||++++++..      .++.++.|.+||..++
T Consensus        14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~   91 (361)
T 2oiz_A           14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL   91 (361)
T ss_dssp             GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred             CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence            445555543      3789999999988877776665444  8999999999998863      1223567999999999


Q ss_pred             eeEEEEecccc---cCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCCeeEEE-EcCCCCCCCCceEEEecCC-CEEE
Q 001310          566 AIKRTYQGLQL---QHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKVQLLTT-IDAGGGLPENPRICFNKNG-TLLA  638 (1103)
Q Consensus       566 ~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~g-~~l~  638 (1103)
                      +.+..+.....   .......++++|+|++++++..  +++|.+||+.+++.+.. +...+    ...+.+.|++ ..++
T Consensus        92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~  167 (361)
T 2oiz_A           92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM  167 (361)
T ss_dssp             CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred             cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence            98888764320   1234667899999999998863  68999999999998887 65432    2335677765 6778


Q ss_pred             EEECCCeEEEEEcCC-CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccc
Q 001310          639 VIANENRIKILETPE-SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLF  717 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~-~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~  717 (1103)
                      +.+.||.+.+|+... ++......                                               ...+|+...
T Consensus       168 ~~~~dg~~~~v~~~~~g~~~~~~~-----------------------------------------------~~~~~~~~~  200 (361)
T 2oiz_A          168 TICGDGGLLTINLGEDGKVASQSR-----------------------------------------------SKQMFSVKD  200 (361)
T ss_dssp             EEETTSSEEEEEECTTSSEEEEEE-----------------------------------------------CCCCSCTTT
T ss_pred             EECCCCcEEEEEECCCCcEeeecc-----------------------------------------------ccceEcCCC
Confidence            888999999998764 33221100                                               001111110


Q ss_pred             cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCC
Q 001310          718 ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT  797 (1103)
Q Consensus       718 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  797 (1103)
                                       .. ..+.+++++..++..+.++.+.++|+.......         +..|........   ...
T Consensus       201 -----------------~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~---~~~  250 (361)
T 2oiz_A          201 -----------------DP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDK---AKN  250 (361)
T ss_dssp             -----------------SC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHH---HTT
T ss_pred             -----------------Cc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccc---ccc
Confidence                             00 011224556666666667778888765332100         001111100000   000


Q ss_pred             CCCCCCCeeEEEEecCCCEEEEEc------------CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC
Q 001310          798 DSNSQEAVPCFALSKNDAYLFSAS------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD  865 (1103)
Q Consensus       798 ~~~~~~~v~~l~~s~d~~~l~~~~------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d  865 (1103)
                      .  .......++|+||++.+.++.            .+.|.+||+.+++.+.++..+.  +.+++|+| |+++|++++. 
T Consensus       251 ~--~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-  324 (361)
T 2oiz_A          251 W--VPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-  324 (361)
T ss_dssp             C--EECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-
T ss_pred             c--ccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-
Confidence            0  011122378999988777653            2479999999999999998776  99999999 8889998887 


Q ss_pred             CeEEEEEcCCc--eeEEEeccCCCCEEEEEEccCCC
Q 001310          866 STILIYNARSS--EVISKLEGHSKRVTGLVFSDALN  899 (1103)
Q Consensus       866 g~v~iwd~~~~--~~~~~l~~h~~~V~~l~~s~dg~  899 (1103)
                      ++|.+||..++  +.+..+..+......++++|||+
T Consensus       325 ~~v~v~D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~  360 (361)
T 2oiz_A          325 GNVNVYDISQPEPKLLRTIEGAAEASLQVQFHPVGG  360 (361)
T ss_dssp             SCEEEEECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred             CeEEEEECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence            99999999999  99999877778889999999986

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.77  E-value=1.4e-16  Score=178.13  Aligned_cols=250  Identities=9%  Similarity=0.056  Sum_probs=172.5

Q ss_pred             CCccEEEEEECCCCCEEEEEeCCCeEEEEEec-CCCccccceEeccccccEEEEEEecCCCceEEEEEc-----------
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYH-GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-----------  462 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d~~i~iwd~~-~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-----------  462 (1103)
                      +...+..++|+|||++|++++.+ .|.+|++. +++... ......+ +.+.+++|+|||+.+++++++           
T Consensus        38 ~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~-~~~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~  114 (365)
T 1jof_A           38 QDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVH-EASHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPF  114 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEE-EEEEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEE
T ss_pred             CCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEE-eeEeecC-CCCccEEECCCCCEEEEEEecCCcceecccee
Confidence            33467889999999999998887 89999997 665332 1111111 235568999999853455553           


Q ss_pred             --CCCceEEEeCC-CCceeEEee----cCCCceEEEEeeecCCccEEEEEE-CCCeEEEEEcC-CCCeeE--Eec--CCC
Q 001310          463 --DDKTIKVWDAV-TGSRTYSFE----GHGAPVYSLCPHAKENIHFIFSIS-VDGKIKAWLYD-SLGARV--DYD--APG  529 (1103)
Q Consensus       463 --~d~~i~iwd~~-~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~~-~dg~i~iwd~~-~~~~~~--~~~--~~~  529 (1103)
                        .++++.+|++. +|+....+.    .+...+.+++|+|  +|+++++++ .++.|++|+++ +++...  .+.  .+.
T Consensus       115 ~~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g  192 (365)
T 1jof_A          115 YKFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPG  192 (365)
T ss_dssp             SSSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTT
T ss_pred             ecCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCC
Confidence              68999999997 466554443    2456788888854  677777765 46899999998 555432  232  235


Q ss_pred             ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC--CCeeEE---EEeccc----ccCC------ceEEEE-EcCCCCEE
Q 001310          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES--EGAIKR---TYQGLQ----LQHN------SVSVVH-FDTAKDQI  593 (1103)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~----~~~~------~v~~~~-~~~~~~~l  593 (1103)
                      ..+..++|+|||++++++..   .++.|.+|+..  +++...   .+....    .+..      .+..++ |+|||++|
T Consensus       193 ~~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l  269 (365)
T 1jof_A          193 DHPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYM  269 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEE
T ss_pred             CCCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEE
Confidence            67889999999999988763   24568887654  565432   222211    0111      488999 99999998


Q ss_pred             EEEeCC-C-----cEEEEECC-CCeeEEE---EcCCCCCCCCceEEEec---CCCEEEEEECC-CeEEEEEcCCC
Q 001310          594 LAAGDD-H-----VIKIWDMN-KVQLLTT---IDAGGGLPENPRICFNK---NGTLLAVIANE-NRIKILETPES  654 (1103)
Q Consensus       594 ~~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~g~~l~~~~~d-g~i~iw~~~~~  654 (1103)
                      +++..+ +     .|.+|++. +++....   ...+  ......++|+|   ||++|++++.+ +.|.+|+....
T Consensus       270 ~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~--~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          270 FASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP--TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             EEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS--SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecC--CCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            876532 2     89999996 5665432   2222  22357899999   89999999864 89999998765

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=1.9e-14  Score=167.52  Aligned_cols=328  Identities=11%  Similarity=0.109  Sum_probs=223.9

Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECC--CCeeEEEEcCCCCCCCCceEEEe
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMN--KVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~--~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                      ++.|.++|..+++.+..+...    ..+..+.|+||++++++++.|+.|.+||+.  +++.+..+....   ....++|+
T Consensus       176 ~~~V~viD~~t~~v~~~i~~g----~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~---~P~~ia~s  248 (567)
T 1qks_A          176 AGQIALIDGSTYEIKTVLDTG----YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS---EARSIETS  248 (567)
T ss_dssp             TTEEEEEETTTCCEEEEEECS----SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS---EEEEEEEC
T ss_pred             CCeEEEEECCCCeEEEEEeCC----CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC---CCceeEEc
Confidence            667999999999999888753    356789999999999999999999999996  788888776532   24789999


Q ss_pred             ----cCCCEEEEEEC-CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecc
Q 001310          632 ----KNGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEA  706 (1103)
Q Consensus       632 ----~~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~  706 (1103)
                          |||++++++.. ++++.++|..+.+.+..+......+                             ++.       
T Consensus       249 ~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~-----------------------------~~~-------  292 (567)
T 1qks_A          249 KMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTY-----------------------------DEQ-------  292 (567)
T ss_dssp             CSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECT-----------------------------TTC-------
T ss_pred             cccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEecccccc-----------------------------ccc-------
Confidence                69999887765 5899999998887766543111000                             000       


Q ss_pred             ccccccccccccCCccceeeeccCccc-cccEEEEEEecCCcEEEEe-ecCceEEEeecCCCccccccccccccCCeeec
Q 001310          707 ENKSEVEKPLFARPSECQSLLLPSKVK-ANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQ  784 (1103)
Q Consensus       707 d~~i~~w~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~  784 (1103)
                                              ..| ...+..+.+++++..++.. ...|.|.++|......           +.+..
T Consensus       293 ------------------------~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~-----------~~v~~  337 (567)
T 1qks_A          293 ------------------------EYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------LKTTE  337 (567)
T ss_dssp             ------------------------CEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------EEEEE
T ss_pred             ------------------------cccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCcc-----------ceeee
Confidence                                    001 1246667778876655444 3458888887654211           00100


Q ss_pred             CCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecC-----CCCCeeEEEEcCCCCC
Q 001310          785 PRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNN  857 (1103)
Q Consensus       785 ~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~  857 (1103)
                                 +   ........+.|+|||++++++.  +++|.++|+.+++.+..+..     |.+.-.. -++|+.+.
T Consensus       338 -----------i---~~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~~~p~~g~  402 (567)
T 1qks_A          338 -----------I---SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-FVHPTFGP  402 (567)
T ss_dssp             -----------E---ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-EEETTTEE
T ss_pred             -----------e---eccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCcccee-eECCCCCc
Confidence                       0   1233456789999999988876  58899999999998777653     2221112 25783355


Q ss_pred             EEEEEe-CCCeEEEEEcCC-------ceeEEEeccCCCCEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCce--
Q 001310          858 VIAIGM-DDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGI--  920 (1103)
Q Consensus       858 ~lasg~-~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-------dg~I~iwd~~~~~~--  920 (1103)
                      +.+++. .+++|.++|..+       .+.++++......-..+.++||+++|.+...       .+.|.++|+.+.+.  
T Consensus       403 v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g  482 (567)
T 1qks_A          403 VWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDG  482 (567)
T ss_dssp             EEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSS
T ss_pred             EEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccc
Confidence            555553 568999999988       6677888765443345778999999887663       35899999987521  


Q ss_pred             -e-eeeeeecC--CCcccCCCCceEEEEcCCCCEEEEE--e----CCeEEEEECCCceEEEEee
Q 001310          921 -Q-TCRSLQTP--DGVMTLAPSETHIQFHKDQTRFLLV--H----ETHLAIYEAEELTCLKQWF  974 (1103)
Q Consensus       921 -~-~~~~~~~~--~~~~~~~~~v~~l~fs~dg~~l~~~--~----d~~v~iwd~~~~~~~~~~~  974 (1103)
                       . ....+...  .+.......+..+.|+|||+.+.++  .    ++.|.|+|..+++....+.
T Consensus       483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~  546 (567)
T 1qks_A          483 SDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIK  546 (567)
T ss_dssp             SCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEEC
T ss_pred             cCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeC
Confidence             1 11222210  0000011258899999999998875  2    6899999999999887643

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.72  E-value=4.7e-14  Score=164.22  Aligned_cols=325  Identities=13%  Similarity=0.140  Sum_probs=221.5

Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC--CCCeeEecccccc
Q 001310          588 TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP--ESNSVDAAGVLSD  665 (1103)
Q Consensus       588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~--~~~~~~~~~~~~~  665 (1103)
                      +.+..+++...++.|.++|..+++.+..+....   .+..+.|+|||+++++++.++.|.+||+.  +.+.+..+.    
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~---~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~----  237 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY---AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIK----  237 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS---CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEE----
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC---CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEe----
Confidence            334456667789999999999999998887542   35689999999999999999999999985  544333221    


Q ss_pred             ceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEe--
Q 001310          666 NLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYN--  743 (1103)
Q Consensus       666 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--  743 (1103)
                                                                                         .......++|+  
T Consensus       238 -------------------------------------------------------------------~G~~P~~ia~s~~  250 (567)
T 1qks_A          238 -------------------------------------------------------------------IGSEARSIETSKM  250 (567)
T ss_dssp             -------------------------------------------------------------------CCSEEEEEEECCS
T ss_pred             -------------------------------------------------------------------cCCCCceeEEccc
Confidence                                                                               01224578899  


Q ss_pred             --cCCcEEEEeecC-ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCC------CC-CCCeeEEEEecC
Q 001310          744 --NGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS------NS-QEAVPCFALSKN  813 (1103)
Q Consensus       744 --~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~-~~~v~~l~~s~d  813 (1103)
                        |||++++++... +.+.++|....+.                      +........      .| ...+..+..+++
T Consensus       251 ~~pDGk~l~v~n~~~~~v~ViD~~t~~~----------------------~~~i~~~~~~~~~~~~~p~~rva~i~~s~~  308 (567)
T 1qks_A          251 EGWEDKYAIAGAYWPPQYVIMDGETLEP----------------------KKIQSTRGMTYDEQEYHPEPRVAAILASHY  308 (567)
T ss_dssp             TTCTTTEEEEEEEETTEEEEEETTTCCE----------------------EEEEECCEECTTTCCEESCCCEEEEEECSS
T ss_pred             cCCCCCEEEEEEccCCeEEEEECCCCcE----------------------EEEEeccccccccccccCCCceEEEEEcCC
Confidence              699988877764 8888887544321                      111111000      01 236778999998


Q ss_pred             CCEEEEEc--CCeEEEEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEEcCCceeEEEecc----
Q 001310          814 DAYLFSAS--GGVISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYNARSSEVISKLEG----  884 (1103)
Q Consensus       814 ~~~l~~~~--dg~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd~~~~~~~~~l~~----  884 (1103)
                      +..++...  .|.|.++|..+.+.+  ..+. .......+.|+| ++++++++. .+++|.++|+.+++.+..+.-    
T Consensus       309 ~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~-~~~~~~d~~~~p-dgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~  386 (567)
T 1qks_A          309 RPEFIVNVKETGKILLVDYTDLNNLKTTEIS-AERFLHDGGLDG-SHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQT  386 (567)
T ss_dssp             SSEEEEEETTTTEEEEEETTCSSEEEEEEEE-CCSSEEEEEECT-TSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred             CCEEEEEecCCCeEEEEecCCCccceeeeee-ccccccCceECC-CCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence            77666553  589999998865432  2222 334667889999 788776654 678999999999988766643    


Q ss_pred             -CCCCEEEEEEccCCCE-EEEEe-CCCeEEEEEcCCCc-----eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe-
Q 001310          885 -HSKRVTGLVFSDALNI-LVSSG-GDAQIFVWDVDGWG-----IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH-  955 (1103)
Q Consensus       885 -h~~~V~~l~~s~dg~~-l~s~s-~dg~I~iwd~~~~~-----~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~-  955 (1103)
                       |.+.-..+ ++|++.. ++++. .+++|.++|.++++     ......+....+      .-..+.++|++++|.+.. 
T Consensus       387 Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~------g~~~i~~~p~~~~l~v~~~  459 (567)
T 1qks_A          387 PHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG------GSLFIKTHPNSQYLYVDAT  459 (567)
T ss_dssp             BCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS------CCCCEECCTTCSEEEEECT
T ss_pred             CCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC------CCEEEEeCCCCCeEEEecC
Confidence             43322222 6787544 44443 46899999998732     112223333211      234578999999999853 


Q ss_pred             -------CCeEEEEECCCc-----eEE-EEee-------CCCCcCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCc
Q 001310          956 -------ETHLAIYEAEEL-----TCL-KQWF-------PISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNL 1010 (1103)
Q Consensus       956 -------d~~v~iwd~~~~-----~~~-~~~~-------~~h~~~v~~l~fs~dg~~l~t~~-----~dg~v~vWd~~~~ 1010 (1103)
                             .+.|.++|+.+.     ... ..+.       ......+..+.|++||+.+.++.     .++.|.|+|..++
T Consensus       460 ~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~  539 (567)
T 1qks_A          460 LNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTL  539 (567)
T ss_dssp             TCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTT
T ss_pred             CCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCcceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCc
Confidence                   358999999877     211 1111       11245789999999999887763     3799999999999


Q ss_pred             eeEEeec
Q 001310         1011 EVQCRIL 1017 (1103)
Q Consensus      1011 ~~~~~~~ 1017 (1103)
                      ++..++.
T Consensus       540 ~~~~~i~  546 (567)
T 1qks_A          540 ELKHVIK  546 (567)
T ss_dssp             EEEEEEC
T ss_pred             eEEEEeC
Confidence            9988877

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.70  E-value=1.4e-15  Score=185.64  Aligned_cols=294  Identities=10%  Similarity=0.002  Sum_probs=194.8

Q ss_pred             EecccCCcCceEEEecCCCceEEEEE--cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEE-----
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVG--TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVN-----  400 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasg--s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-----  400 (1103)
                      ..+.+|...|..++||+++- +++++  +.++...||....+.....                   +..|...+.     
T Consensus        17 ~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------l~~~~~~~~~~~~~   76 (662)
T 3azo_A           17 ALVASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEES-------------------ALPAPWNVRNRVFE   76 (662)
T ss_dssp             HHHHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEEE-------------------SSCTTCCBCCCGGG
T ss_pred             HHHhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcce-------------------eCCCCccccccccc
Confidence            45678999999999999875 56666  5678899999644433322                   444555555     


Q ss_pred             ----EEEEC--CCCCE-EEEEeC-CCeEEEEEec--C-CCccccceEecc-----ccccEEEEEEecCCCceEEEEEcCC
Q 001310          401 ----RVVWS--PDGSL-LGVAYS-KHIVQLYAYH--G-GSDARQQLEIDA-----HVGNVNDLAFSAPCKQISVITCGDD  464 (1103)
Q Consensus       401 ----~~~~s--pdg~~-las~~~-d~~i~iwd~~--~-~~~~~~~~~l~~-----h~~~v~~~~~s~d~~~~~l~s~~~d  464 (1103)
                          ..+|+  |||++ ||.++. +..|.+|++.  + ++ ..   .+..     |...+.+++|+|||+  .|++++.|
T Consensus        77 ~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~  150 (662)
T 3azo_A           77 YSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEE  150 (662)
T ss_dssp             TCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEE
T ss_pred             cCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEec
Confidence                55565  99999 887654 4556666655  2 33 22   3444     677899999999999  67777666


Q ss_pred             ----------CceEEEeCCC------CceeEEee-cCCCceEEEEeeecCCccEEEEEECC--------CeEEEEEcC-C
Q 001310          465 ----------KTIKVWDAVT------GSRTYSFE-GHGAPVYSLCPHAKENIHFIFSISVD--------GKIKAWLYD-S  518 (1103)
Q Consensus       465 ----------~~i~iwd~~~------~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~-~  518 (1103)
                                ..|++||+.+      ++ ...+. .+...+..++|  ++||++|+.++.+        ..|.+||++ +
T Consensus       151 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~--SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~  227 (662)
T 3azo_A          151 FTGEGPSDVRRFLAAVPLDGSAAADRSA-VRELSDDAHRFVTGPRL--SPDGRQAVWLAWDHPRMPWEGTELKTARVTED  227 (662)
T ss_dssp             ECSSSTTCEEEEEEEEETTSTTTTCGGG-SEESSCSCSSEECCCEE--CTTSSEEEEEEECTTCCTTTCEEEEEEEECTT
T ss_pred             ccCCCCCCceeEEEEEECCCCccccCCc-eeEEEecCCCcccCceE--CCCCCEEEEEECCCCCCCCCCcEEEEEEECCC
Confidence                      5899999988      44 44555 55666777777  5588899887755        379999998 4


Q ss_pred             C---CeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCC-----ceEEEEEcCCC
Q 001310          519 L---GARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHN-----SVSVVHFDTAK  590 (1103)
Q Consensus       519 ~---~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~  590 (1103)
                      +   ........+...+..++|+|||++++++..  ++...|++||..+++.......+.....     .+..++|++++
T Consensus       228 g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~  305 (662)
T 3azo_A          228 GRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANG  305 (662)
T ss_dssp             SCEEEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTS
T ss_pred             CcccccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCC
Confidence            5   333333444678899999999995555533  3344788999878776554443321000     15678899999


Q ss_pred             CEEEEEeCCCcEEEE--ECCCCeeEEEEcCCCCCCCCceEEEecCCCE--EEEEECCC--eEEEEEcCCCCee
Q 001310          591 DQILAAGDDHVIKIW--DMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANEN--RIKILETPESNSV  657 (1103)
Q Consensus       591 ~~l~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~--l~~~~~dg--~i~iw~~~~~~~~  657 (1103)
                      ..+++++. +.+++|  |..+++ +..+..+.  ..+..+ +++++..  ++.++.+.  .|.++++.+++..
T Consensus       306 ~~~~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~  373 (662)
T 3azo_A          306 LIAVVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTGRAR  373 (662)
T ss_dssp             CEEEEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTCCEE
T ss_pred             EEEEEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCCceE
Confidence            99999988 999999  665565 55555442  234444 1444443  34445554  4555566666543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.69  E-value=4.3e-15  Score=165.26  Aligned_cols=262  Identities=9%  Similarity=0.104  Sum_probs=177.7

Q ss_pred             CceEEEecCCCceEEEEE--------cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          336 SPMSMDFHPVQHTLLLVG--------TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasg--------s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      .+..+++  ||++++.+.        ..++.|.+||+.+++...                    +    ..+..++||||
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~SpD   69 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISPD   69 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECTT
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECCC
Confidence            5677778  888655442        125779999998876432                    2    46788999999


Q ss_pred             CCEEEEEeCC---C--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-------------------
Q 001310          408 GSLLGVAYSK---H--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-------------------  463 (1103)
Q Consensus       408 g~~las~~~d---~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-------------------  463 (1103)
                      |++||+++.+   +  .|.+|++.+++...    +..+.. +..++|+|||+.  |+.++.                   
T Consensus        70 g~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~  142 (347)
T 2gop_A           70 GKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWFD  142 (347)
T ss_dssp             SSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC--
T ss_pred             CCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceeec
Confidence            9999988654   3  47788888765332    333334 999999999994  555442                   


Q ss_pred             --------CCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCC-------eEEEEEcCCCCeeEEecCC
Q 001310          464 --------DKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG-------KIKAWLYDSLGARVDYDAP  528 (1103)
Q Consensus       464 --------d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-------~i~iwd~~~~~~~~~~~~~  528 (1103)
                              ...|.+||+.+++.+..+.. . .+..++|+  +++ +++++..++       ...+|.++++ ....+..+
T Consensus       143 g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~s--pdg-~~~~~~~~~~~~~~~~~~~l~~~d~~-~~~~l~~~  216 (347)
T 2gop_A          143 DLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWH--RDK-IVVNVPHREIIPQYFKFWDIYIWEDG-KEEKMFEK  216 (347)
T ss_dssp             -------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEE--TTE-EEEEEECCCSSCCSSCCEEEEEEETT-EEEEEEEE
T ss_pred             CcccccCccceEEEEECCCCeEEeeecC-C-CcccccCC--CCe-EEEEEecccccccccccccEEEeCCC-ceEEeccC
Confidence                    25799999999887555554 3 67777885  466 777776542       4455555533 33333323


Q ss_pred             CccEEEEEEccCCCEEEEEecCCC----CceeEEEEeCCCCeeEEEEecccccCCceEE-EEEcCCCCEEEEEeCCCcEE
Q 001310          529 GLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNESEGAIKRTYQGLQLQHNSVSV-VHFDTAKDQILAAGDDHVIK  603 (1103)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~  603 (1103)
                       ..+..+  +|||++|+.++....    ....|++||  +++.......+.   ..+.. +.|+ ++ .+++++.++.++
T Consensus       217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~---~~~~~~~~~s-dg-~~~~~~~~~~~~  286 (347)
T 2gop_A          217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVD---RGVGQAKIKD-GK-VYFTLFEEGSVN  286 (347)
T ss_dssp             -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCC---SEEEEEEEET-TE-EEEEEEETTEEE
T ss_pred             -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCC---cccCCccEEc-Cc-EEEEEecCCcEE
Confidence             444444  999999988775331    245789999  665544444434   56775 8999 88 888899999999


Q ss_pred             EEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeE-EEEEcC
Q 001310          604 IWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETP  652 (1103)
Q Consensus       604 iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i-~iw~~~  652 (1103)
                      +| +.+++.......   ...+.+++|+|  .++++++.++.. .+|.+.
T Consensus       287 l~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~  330 (347)
T 2gop_A          287 LY-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD  330 (347)
T ss_dssp             EE-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred             EE-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence            99 876665444433   23578899999  677777777654 777766

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.68  E-value=6.8e-16  Score=175.39  Aligned_cols=244  Identities=9%  Similarity=-0.010  Sum_probs=165.6

Q ss_pred             EEEEEECCCCCEEEEEeCC---CeEEEEEecCCCccccceEecccccc-EEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          399 VNRVVWSPDGSLLGVAYSK---HIVQLYAYHGGSDARQQLEIDAHVGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       399 V~~~~~spdg~~las~~~d---~~i~iwd~~~~~~~~~~~~l~~h~~~-v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      +..++|||||++||.+...   ..|.+||+.+++...    +..+... ...+.|+|||+  .|+.++.++.|++||+.+
T Consensus        38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~----l~~~~~~~~~~~~~spdg~--~l~~~~~~~~l~~~d~~~  111 (396)
T 3c5m_A           38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ----LTEGKGDNTFGGFISTDER--AFFYVKNELNLMKVDLET  111 (396)
T ss_dssp             TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE----CCCSSCBCTTTCEECTTSS--EEEEEETTTEEEEEETTT
T ss_pred             eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE----eecCCCCccccceECCCCC--EEEEEEcCCcEEEEECCC
Confidence            6778999999999887543   368889998875332    2333333 33478999999  788888888999999999


Q ss_pred             CceeEEeecCCCceEE---EEe--------------eecCCccEEEEE-----ECCCeEEEEEcCCCCeeEEecCCCccE
Q 001310          475 GSRTYSFEGHGAPVYS---LCP--------------HAKENIHFIFSI-----SVDGKIKAWLYDSLGARVDYDAPGLGC  532 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~---~~~--------------~~~~~~~~l~s~-----~~dg~i~iwd~~~~~~~~~~~~~~~~i  532 (1103)
                      ++.......+......   +++              ..++++..++..     ..+..|.+||+.+++..... .....+
T Consensus       112 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~  190 (396)
T 3c5m_A          112 LEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWL  190 (396)
T ss_dssp             CCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCE
T ss_pred             CCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCccc
Confidence            8876666555443222   111              123344444433     35668999999887655444 345578


Q ss_pred             EEEEEcc-CCCEEEEEecCCCC--ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-----CcEEE
Q 001310          533 TRMAYSA-NGRRLFSCGTSKEG--ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKI  604 (1103)
Q Consensus       533 ~~~~~s~-dg~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~i  604 (1103)
                      ..+.|+| +++.++.++.....  ...|++||+.+++.........  ...+..++|+|++++|+.++.+     +.|++
T Consensus       191 ~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~  268 (396)
T 3c5m_A          191 GHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAE--GESCTHEFWIPDGSAMAYVSYFKGQTDRVIYK  268 (396)
T ss_dssp             EEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCT--TEEEEEEEECTTSSCEEEEEEETTTCCEEEEE
T ss_pred             ccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCC--CccccceEECCCCCEEEEEecCCCCccceEEE
Confidence            8999999 88888777642210  1569999987765433333111  2357889999999988876543     44999


Q ss_pred             EECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEEE----------------CCCeEEEEEcCCCCe
Q 001310          605 WDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVIA----------------NENRIKILETPESNS  656 (1103)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~----------------~dg~i~iw~~~~~~~  656 (1103)
                      ||+.+++.........    .. ++|+| ||+++++++                .++.|.+||..+++.
T Consensus       269 ~d~~~g~~~~l~~~~~----~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~  332 (396)
T 3c5m_A          269 ANPETLENEEVMVMPP----CS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA  332 (396)
T ss_dssp             ECTTTCCEEEEEECCS----EE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred             EECCCCCeEEeeeCCC----CC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence            9999887654433221    22 89999 999888765                347899999987753

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.68  E-value=4.2e-14  Score=152.19  Aligned_cols=241  Identities=10%  Similarity=0.105  Sum_probs=174.7

Q ss_pred             CCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecC------CCCCeeEEEEc-CCCCCEEEEEeC-CCeEEE
Q 001310          800 NSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMP------PSPTATSLAFN-PHDNNVIAIGMD-DSTILI  870 (1103)
Q Consensus       800 ~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s-~~d~~~lasg~~-dg~v~i  870 (1103)
                      ++-..+.+++++++++++++.. ++.|.+||.. ++.+..+..      +...+..++++ + +++++++... ++.|++
T Consensus        27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~-~g~l~v~~~~~~~~i~~  104 (286)
T 1q7f_A           27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRN-SGDIIVTERSPTHQIQI  104 (286)
T ss_dssp             TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETT-TTEEEEEECGGGCEEEE
T ss_pred             CccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcC-CCeEEEEcCCCCCEEEE
Confidence            3556788999999999888865 6899999987 666666542      33578899994 5 7777666643 889999


Q ss_pred             EEcCCceeEEEecc-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310          871 YNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1103)
Q Consensus       871 wd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  949 (1103)
                      || .+++.+..+.. +...+.+++++|+|+++++...++.|.+||... +...  .+... +..   ..+..++++++|+
T Consensus       105 ~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~--~~~~~-~~~---~~p~~i~~~~~g~  176 (286)
T 1q7f_A          105 YN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLH--KFGCS-KHL---EFPNGVVVNDKQE  176 (286)
T ss_dssp             EC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEE--EEECT-TTC---SSEEEEEECSSSE
T ss_pred             EC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEE--EeCCC-Ccc---CCcEEEEECCCCC
Confidence            99 66777766643 456789999999999888888889999999754 3221  12111 111   2578999999999


Q ss_pred             EEEEE-eCCeEEEEECCCceEEEEeeC-CCCcCeEEEEEccCCCEEEEEecCC-cEEEEeCCCceeEEeeccccccCCCC
Q 001310          950 RFLLV-HETHLAIYEAEELTCLKQWFP-ISSVPISQATFSCDCRMVFTSFVDG-TLSIHEASNLEVQCRILSTAYLRPTT 1026 (1103)
Q Consensus       950 ~l~~~-~d~~v~iwd~~~~~~~~~~~~-~h~~~v~~l~fs~dg~~l~t~~~dg-~v~vWd~~~~~~~~~~~~~~~~~~~~ 1026 (1103)
                      ++++. .++.|++||.. ++.+..+.. ++...+..++++++|+++++...++ .|.+||. +++.+..+..        
T Consensus       177 l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~--------  246 (286)
T 1q7f_A          177 IFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES--------  246 (286)
T ss_dssp             EEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE--------
T ss_pred             EEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc--------
Confidence            77775 58899999975 555555322 2346789999999999888887775 9999995 4665555541        


Q ss_pred             CCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310         1027 SHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus      1027 ~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
                                 +.....+..++++|+ ++++++ +.|++|++|++..
T Consensus       247 -----------~~~~~~~~~i~~~~~-g~l~vs-~~~~~v~v~~~~~  280 (286)
T 1q7f_A          247 -----------KVKHAQCFDVALMDD-GSVVLA-SKDYRLYIYRYVQ  280 (286)
T ss_dssp             -----------SSCCSCEEEEEEETT-TEEEEE-ETTTEEEEEECSC
T ss_pred             -----------cCCCCcceeEEECCC-CcEEEE-CCCCeEEEEEccc
Confidence                       111123457788887 777766 6799999999843

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.68  E-value=1.6e-14  Score=158.68  Aligned_cols=248  Identities=11%  Similarity=0.085  Sum_probs=184.7

Q ss_pred             cCceEEEecCCCceEEEEEcCC------------------------CcEEEEECCCCCeeeeeeeeEeeccccccceeee
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNV------------------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA  390 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d------------------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~  390 (1103)
                      +.|.+++++|+|+ ++++.+.+                        ++|.+||..+|+.+...                 
T Consensus        24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~-----------------   85 (329)
T 3fvz_A           24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSS-----------------   85 (329)
T ss_dssp             SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEE-----------------
T ss_pred             CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEecc-----------------
Confidence            5899999999998 67777766                        47999999888865420                 


Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCC-ccccceEe---------ccccccEEEEEEec-CCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS-DARQQLEI---------DAHVGNVNDLAFSA-PCKQISVI  459 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~-~~~~~~~l---------~~h~~~v~~~~~s~-d~~~~~l~  459 (1103)
                       -.++-..+..++++|+|+++++...++.|++||..+.. .+.   .+         .++......++|+| ++.  +++
T Consensus        86 -~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv  159 (329)
T 3fvz_A           86 -GKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV  159 (329)
T ss_dssp             -CTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred             -CCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence             22455678999999999988888889999999986542 222   33         24455789999999 677  677


Q ss_pred             EEc-CCCceEEEeCCCCceeEEeecCC----------CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec--
Q 001310          460 TCG-DDKTIKVWDAVTGSRTYSFEGHG----------APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--  526 (1103)
Q Consensus       460 s~~-~d~~i~iwd~~~~~~~~~~~~~~----------~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--  526 (1103)
                      +.+ .++.|++|| .+|+.+..+....          .....+++.+. .+.++++...++.|++|+.++++....+.  
T Consensus       160 ~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~  237 (329)
T 3fvz_A          160 SDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHA  237 (329)
T ss_dssp             EECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCT
T ss_pred             EeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEecc
Confidence            775 689999999 7788777774322          33788888642 26788888889999999998777776663  


Q ss_pred             CCCccEEEEEEccCCCEEEEEecC---CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310          527 APGLGCTRMAYSANGRRLFSCGTS---KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1103)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~---~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  603 (1103)
                      .....+..++++| +..+...+..   ......|++||..+++.+..+.....+...+..++++|+|..+++...++.|+
T Consensus       238 ~~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~dG~lyvad~~~~~I~  316 (329)
T 3fvz_A          238 SFGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASEDGTVYIGDAHTNTVW  316 (329)
T ss_dssp             TTTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTTSEEEEEESSSCCEE
T ss_pred             ccCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCCCCEEEEECCCCEEE
Confidence            3455788999999 4444433210   12245799999999999988853222336789999999997777788899999


Q ss_pred             EEECCC
Q 001310          604 IWDMNK  609 (1103)
Q Consensus       604 iwd~~~  609 (1103)
                      +|++..
T Consensus       317 ~~~~~~  322 (329)
T 3fvz_A          317 KFTLTE  322 (329)
T ss_dssp             EEEEEE
T ss_pred             EEeCCc
Confidence            999753

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.67  E-value=2.6e-14  Score=157.00  Aligned_cols=248  Identities=11%  Similarity=0.068  Sum_probs=181.9

Q ss_pred             CCCCeeEEEEecCCCEEEEEcCC-------------------------eEEEEEcCCceeeEEec-CCCCCeeEEEEcCC
Q 001310          801 SQEAVPCFALSKNDAYLFSASGG-------------------------VISLYIVMTFKTILTIM-PPSPTATSLAFNPH  854 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~dg-------------------------~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~  854 (1103)
                      .-..+.+++++|+|+++++...+                         .|.+||..+++.+..+. .+-.....++++| 
T Consensus        22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~-  100 (329)
T 3fvz_A           22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT-  100 (329)
T ss_dssp             CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-
T ss_pred             ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-
Confidence            34678999999999999887643                         69999999898877665 3446789999999 


Q ss_pred             CCCEEEEEeCCCeEEEEEcCCce-eEEEe---------ccCCCCEEEEEEcc-CCCEEEEEe-CCCeEEEEEcCCCceee
Q 001310          855 DNNVIAIGMDDSTILIYNARSSE-VISKL---------EGHSKRVTGLVFSD-ALNILVSSG-GDAQIFVWDVDGWGIQT  922 (1103)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~-~~~~l---------~~h~~~V~~l~~s~-dg~~l~s~s-~dg~I~iwd~~~~~~~~  922 (1103)
                      +++++++...++.|++|+..... .+..+         .++......++++| +|.++++.+ .++.|++|+.+ ++...
T Consensus       101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~~-g~~~~  179 (329)
T 3fvz_A          101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSPS-GKFVT  179 (329)
T ss_dssp             TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECTT-SCEEE
T ss_pred             CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcCC-CCEEE
Confidence            88888888889999999976542 45555         34555789999999 888888886 69999999954 44322


Q ss_pred             eeeeecC-----CCcccCCCCceEEEEcCC-CCEEEEE-eCCeEEEEECCCceEEEEee-CCCCcCeEEEEEcc------
Q 001310          923 CRSLQTP-----DGVMTLAPSETHIQFHKD-QTRFLLV-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSC------  988 (1103)
Q Consensus       923 ~~~~~~~-----~~~~~~~~~v~~l~fs~d-g~~l~~~-~d~~v~iwd~~~~~~~~~~~-~~h~~~v~~l~fs~------  988 (1103)
                      .......     .+..   ..+..++|+|+ |.++++. .++.|++||..+|+.+..+. ..+...+..++|+|      
T Consensus       180 ~~~~~g~~~~~~~~~~---~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~  256 (329)
T 3fvz_A          180 QWGEESSGSSPRPGQF---SVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHASFGRNVFAISYIPGFLFAV  256 (329)
T ss_dssp             EECEECCSSSCCTTEE---SCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEETTEEEEE
T ss_pred             EeccCCCCCCCCCccc---CCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEeccccCCCcceeeecCCEEEEe
Confidence            1111100     0111   24789999999 5555554 67899999999899887753 34567889999999      


Q ss_pred             CCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEE
Q 001310          989 DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1068 (1103)
Q Consensus       989 dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~v 1068 (1103)
                      +|+.+++...+.+|++||+.+++.+..+....                ++.  -.+..++++|+ |+++++...++.|++
T Consensus       257 ~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~----------------~~~--~~p~~ia~~~d-G~lyvad~~~~~I~~  317 (329)
T 3fvz_A          257 NGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVR----------------KHF--DMPHDIVASED-GTVYIGDAHTNTVWK  317 (329)
T ss_dssp             ECCCCTTCSCCCCEEEEETTTCCEEEEECCSS----------------SCC--SSEEEEEECTT-SEEEEEESSSCCEEE
T ss_pred             CCCEEeccCCCcEEEEEEcCCCeEEEEEcCCC----------------Ccc--CCeeEEEECCC-CCEEEEECCCCEEEE
Confidence            33333333344589999999999887765210                111  22457888998 789999999999999


Q ss_pred             EccC
Q 001310         1069 IEPN 1072 (1103)
Q Consensus      1069 w~~~ 1072 (1103)
                      |++.
T Consensus       318 ~~~~  321 (329)
T 3fvz_A          318 FTLT  321 (329)
T ss_dssp             EEEE
T ss_pred             EeCC
Confidence            9984

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.66  E-value=8.6e-10  Score=136.78  Aligned_cols=586  Identities=9%  Similarity=0.032  Sum_probs=339.4

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ..|+++.-.++|..+  .|+.+| +..||-   .....     +....    ...  -.-....|.++...++|.+.+ |
T Consensus        43 n~v~~I~qD~~G~lW--igT~~G-L~ryDG---~~f~~-----~~~~~----~~~--~~l~~n~I~~i~~d~~g~lWi-g  104 (795)
T 4a2l_A           43 STVFSIDQDKRGNMW--FATYDG-VNKYDG---YAFTV-----YQHNE----DDP--NSIANDISRIVKTDSQGRVWI-G  104 (795)
T ss_dssp             SCEEEEEECTTSCEE--EEETTE-EEEECS---SCEEE-----ECCCT----TCT--TSCSCSCEEEEEECTTSCEEE-E
T ss_pred             ceeEEEEEcCCCCEE--EeecCc-CcccCC---CceEE-----EeCCC----CCC--CcccccceeEEEECCCCCEEE-E
Confidence            479999999999744  444555 566663   22211     11000    000  000246799999999987665 4


Q ss_pred             eCCCeEEEEEecCCCccccceEeccccc----cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC-CCc-e
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH-GAP-V  488 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~----~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~-v  488 (1103)
                      +.+| +..||..+++. .   .+.....    .|.++...++|.  +.+ ++. +.|..||..+++.......+ ... |
T Consensus       105 T~~G-l~~yd~~~~~f-~---~~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i  175 (795)
T 4a2l_A          105 TRDG-LSRYDEEKDIF-Q---NFFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTI  175 (795)
T ss_dssp             ESSC-EEEEETTTTEE-E---EECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEEECSSSCHHHHTCC
T ss_pred             eCCc-hheeCCCCCeE-E---eccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEEEeccCCCCCCcce
Confidence            4555 89999876542 1   2222111    288898888887  344 443 45899997776543211111 112 7


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1103)
                      .++....  ++. +..++.++.+..|+..+.+..... ......|.++...++|.+.+.....     -+..||..+++.
T Consensus       176 ~~i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~~~-----Gl~~~~~~~~~~  247 (795)
T 4a2l_A          176 ASTLYRQ--GDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATEGA-----GLFLINPKTKEI  247 (795)
T ss_dssp             EEEEEEE--TTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEBSS-----CEEEEETTTTEE
T ss_pred             EEEEECC--CCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEECCC-----CeEEEeCCCCeE
Confidence            7776643  444 445666656888887765543321 1234568888888888766654221     189999887765


Q ss_pred             EEEEecc----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC-----CCCCCceEEEecCCCEEE
Q 001310          568 KRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       568 ~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~g~~l~  638 (1103)
                      .......    ......|.++...++|.. ..|+.+ -|.+||..++..........     ....|.++...++|.+ .
T Consensus       248 ~~~~~~~~~~~~l~~~~i~~i~~d~~g~l-Wigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l-W  324 (795)
T 4a2l_A          248 KNYLHSPSNPKSISSNYIRSLAMDSQNRL-WIGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM-W  324 (795)
T ss_dssp             EEECCCTTCTTSCSCSBEEEEEECTTSCE-EEEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE-E
T ss_pred             EEeecCCCCccccCCCeEEEEEEcCCCCE-EEEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE-E
Confidence            4332211    112357999999888764 445555 58899988776544322110     1235778888888864 4


Q ss_pred             EEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccccc
Q 001310          639 VIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFA  718 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~  718 (1103)
                      +|+.++-|..|+..+.... .+..          .                      +.                     
T Consensus       325 igt~~~Gl~~~~~~~~~~~-~~~~----------~----------------------~~---------------------  350 (795)
T 4a2l_A          325 LGTYFGGLNYYHPIRNRFK-NIRN----------I----------------------PY---------------------  350 (795)
T ss_dssp             EEESSSCEEEECGGGGSSE-EECC----------C----------------------TT---------------------
T ss_pred             EEECCCCeEEeCCCcccce-EEcC----------C----------------------CC---------------------
Confidence            5666666777765433211 0000          0                      00                     


Q ss_pred             CCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCC
Q 001310          719 RPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTD  798 (1103)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  798 (1103)
                                +.......|.++...++|. +-.++.++-+..|+......            ..+....+. .. ..   
T Consensus       351 ----------~~~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-~~-~~---  402 (795)
T 4a2l_A          351 ----------KNSLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-SA-RG---  402 (795)
T ss_dssp             ----------SSSCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC--------C---
T ss_pred             ----------CCCCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-cc-cC---
Confidence                      0001235688888888887 55566665666666433211            111100000 00 00   


Q ss_pred             CCCCCCeeEEEEecCCC-EEEEEcCCeEEEEEcCCceeeEEec----CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEc
Q 001310          799 SNSQEAVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILTIM----PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNA  873 (1103)
Q Consensus       799 ~~~~~~v~~l~~s~d~~-~l~~~~dg~i~iwd~~~~~~~~~~~----~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~  873 (1103)
                       -....|.+++..++|+ +.+...++.+.++|..+++...-..    .+...|.++...+ ++++.+ |+.+ -+.+||.
T Consensus       403 -l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~~-Gl~~~~~  478 (795)
T 4a2l_A          403 -IGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTLS-ALVRFNP  478 (795)
T ss_dssp             -CSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EESS-CEEEEET
T ss_pred             -CCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-EecC-ceeEEeC
Confidence             0346789999999999 6655556789999998776443322    1345789999988 676555 4444 5889998


Q ss_pred             CCceeEEEecc------CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310          874 RSSEVISKLEG------HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       874 ~~~~~~~~l~~------h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  947 (1103)
                      .+++.......      ....|.++...++|++.+... . -|..||..+++. .........+.  ....|.++...++
T Consensus       479 ~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~-~~~~~~~~~~l--~~~~i~~i~~d~~  553 (795)
T 4a2l_A          479 EQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI-QKASILPVSNV--TKLFTNCIYEASN  553 (795)
T ss_dssp             TTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE-EECCCSCSCGG--GGSCEEEEEECTT
T ss_pred             CCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE-EEecCCCCCCC--CCCeeEEEEECCC
Confidence            87754332211      236799999999998776544 4 488999887654 11000011111  1236889999999


Q ss_pred             CCEEEEEeCCeEEEEECCCceEEEEeeCC---CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCC
Q 001310          948 QTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024 (1103)
Q Consensus       948 g~~l~~~~d~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~ 1024 (1103)
                      |++.+.+.. .+..||..+++...- ...   ....|.++...++|.+.+++ . +-|..||..+++.. .+....-++ 
T Consensus       554 g~lWigT~~-Gl~~~d~~~~~~~~~-~~~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~~~~-~~~~~dGl~-  627 (795)
T 4a2l_A          554 GIIWVGTRE-GFYCFNEKDKQIKRY-NTTNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETEKFR-NFTESDGLQ-  627 (795)
T ss_dssp             SCEEEEESS-CEEEEETTTTEEEEE-CGGGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTTEEE-EECGGGTCS-
T ss_pred             CCEEEEeCC-CceeECCCCCcEEEe-CCCCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCCcEE-EcCCcCCCc-
Confidence            997776654 789999887765431 111   14568889988888876644 3 45888998877643 333111111 


Q ss_pred             CCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310         1025 TTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1025 ~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                                    ...+..-++...++ |. |..|+.+| +..+++.
T Consensus       628 --------------~~~f~~~~~~~~~~-G~-l~~g~~~G-l~~~~p~  658 (795)
T 4a2l_A          628 --------------SNQFNTASYCRTSV-GQ-MYFGGING-ITTFRPE  658 (795)
T ss_dssp             --------------CSCEEEEEEEECTT-SC-EEEEETTE-EEEECGG
T ss_pred             --------------cccCccCceeECCC-Ce-EEEecCCc-eEEEcHH
Confidence                          11122234555655 44 55567777 5566653

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=99.66  E-value=1.7e-10  Score=143.00  Aligned_cols=535  Identities=8%  Similarity=0.038  Sum_probs=321.9

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ..|.++...++|.. .+ |+. +.+..||..+++...- ...               .......|.++...++|.+.+..
T Consensus        88 n~I~~i~~d~~g~l-Wi-gT~-~Gl~~yd~~~~~f~~~-~~~---------------~~~~~~~i~~i~~d~~g~lwi~t  148 (795)
T 4a2l_A           88 DISRIVKTDSQGRV-WI-GTR-DGLSRYDEEKDIFQNF-FYE---------------KNGKHLQVNGIEEISPEQLLIST  148 (795)
T ss_dssp             SCEEEEEECTTSCE-EE-EES-SCEEEEETTTTEEEEE-CCE---------------ETTEECCCCEEEEEETTEEEEEE
T ss_pred             cceeEEEECCCCCE-EE-EeC-CchheeCCCCCeEEec-ccc---------------ccCCCceEEEEEECCCCCEEEEE
Confidence            47999999999983 33 334 4589999877653221 000               00000118888888888766654


Q ss_pred             eCCCeEEEEEecCCCccccceEeccc-ccc-EEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEE
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDAH-VGN-VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSL  491 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~-v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~  491 (1103)
                       .. .|..||..+++.....   .++ ... |.++...+++.   +..+..++.|..||..+++..... ..+...|.++
T Consensus       149 -~~-gl~~~~~~~~~~~~~~---~~~~~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i  220 (795)
T 4a2l_A          149 -PE-GLIMFDIKESKFIDDS---FSTAMHKTIASTLYRQGDQ---IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAI  220 (795)
T ss_dssp             -TT-EEEEEETTTTEEECSS---SCHHHHTCCEEEEEEETTE---EEEEESSSCEEEEETTTCCEEECC----CCCEEEE
T ss_pred             -CC-ceEEEECCCCEEEecc---CCCCCCcceEEEEECCCCC---EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEE
Confidence             44 4889998765422110   111 123 88898888886   444555556999998777654321 1234567777


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC-------CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA-------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1103)
                      ....  ++. +..++.++-+..||..+.+.......       ....|.++...++|...+... .     -|.+||..+
T Consensus       221 ~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~-~-----Gl~~~~~~~  291 (795)
T 4a2l_A          221 LQQS--PTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSISSNYIRSLAMDSQNRLWIGTF-N-----DLNIYHEGT  291 (795)
T ss_dssp             EEEE--TTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCSCSBEEEEEECTTSCEEEEES-S-----CEEEEETTT
T ss_pred             EEcC--CCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccCCCeEEEEEEcCCCCEEEEeC-C-----hhheEcCCC
Confidence            6643  444 55555554588888776544332221       235699999999988766542 1     289999887


Q ss_pred             CeeEEEEecc----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC--C--CCCCCceEEEecCCCE
Q 001310          565 GAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG--G--GLPENPRICFNKNGTL  636 (1103)
Q Consensus       565 ~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--~--~~~~v~~v~~s~~g~~  636 (1103)
                      ++........    ......|.++...++|. +..|+.++-|..|+..++.........  .  ....|.++...++|++
T Consensus       292 ~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d~~g~l  370 (795)
T 4a2l_A          292 DSFASYSSNPVENGSLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRFKNIRNIPYKNSLSDNVVSCIVEDKDKNL  370 (795)
T ss_dssp             TEEEEECCCTTSTTSCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSSEEECCCTTSSSCSCSSEEEEEECTTSCE
T ss_pred             CeEEEEecCCCCCCCCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccceEEcCCCCCCCCCCCeeEEEEECCCCCE
Confidence            7654332211    11236799999988876 566777788999987665433221111  0  1234778888887764


Q ss_pred             EEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          637 LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                       .+|+.++-|..|+..++........                                 +.+.                 
T Consensus       371 -WiGt~~~Gl~~~~~~~~~~~~~~~~---------------------------------~~~~-----------------  399 (795)
T 4a2l_A          371 -WIGTNDGGLNLYNPITQRFTSYTLQ---------------------------------EDES-----------------  399 (795)
T ss_dssp             -EEEESSSCEEEECTTTCCEEEECCC------------------------------------------------------
T ss_pred             -EEEECCCCeEEEcCCCCcEEEEecC---------------------------------CCCc-----------------
Confidence             4577776788888765532211000                                 0000                 


Q ss_pred             ccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccC
Q 001310          717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDT  796 (1103)
Q Consensus       717 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  796 (1103)
                             .     .......|.++...++|..|.+++.++-+..|+......            ..+.....        
T Consensus       400 -------~-----~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~------------~~~~~~~~--------  447 (795)
T 4a2l_A          400 -------A-----RGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQV------------ENFNQRNS--------  447 (795)
T ss_dssp             --------------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCE------------EEECTTTS--------
T ss_pred             -------c-----cCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcE------------EEeecCCC--------
Confidence                   0     000235678888888888556666655677776443211            11110000        


Q ss_pred             CCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecC------CCCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 001310          797 TDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1103)
Q Consensus       797 ~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1103)
                        ......|.++...++|.+.+... +.+.+||..+++.......      ....|.++...+ ++++.+ |+. +-+..
T Consensus       448 --~l~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~-~g~lWi-gt~-~Gl~~  521 (795)
T 4a2l_A          448 --QLVNENVYAILPDGEGNLWLGTL-SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDS-HKRLWI-GGE-EGLSV  521 (795)
T ss_dssp             --CCSCSCEEEEEECSSSCEEEEES-SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECT-TCCEEE-EES-SCEEE
T ss_pred             --CcCCCeeEEEEECCCCCEEEEec-CceeEEeCCCCeEEEccccccccccCCceEEEEEECC-CCCEEE-EeC-CceEE
Confidence              01356789999999998877766 5688999887655332211      235789999988 676555 444 45888


Q ss_pred             EEcCCceeEEEec-------cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310          871 YNARSSEVISKLE-------GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       871 wd~~~~~~~~~l~-------~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1103)
                      ||..+++.  .+.       .....|.++...++|.+.+... .| |..||..+++...   .....+..  ...|.++.
T Consensus       522 ~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~G-l~~~d~~~~~~~~---~~~~~gl~--~~~i~~i~  592 (795)
T 4a2l_A          522 FKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-EG-FYCFNEKDKQIKR---YNTTNGLP--NNVVYGIL  592 (795)
T ss_dssp             EEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-SC-EEEEETTTTEEEE---ECGGGTCS--CSCEEEEE
T ss_pred             EeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-CC-ceeECCCCCcEEE---eCCCCCCc--hhheEEEE
Confidence            99887765  322       1345799999999998766543 44 8899988765332   22222221  13588899


Q ss_pred             EcCCCCEEEEEeCCeEEEEECCCceEEEEeeC--CC-CcCe--EEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          944 FHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--IS-SVPI--SQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       944 fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~--~h-~~~v--~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      ..++|++.+++ ++.|..|+..+++... +..  +- ...+  .++...+||++++ |+.+| +..++..
T Consensus       593 ~d~~g~lWi~t-~~Gl~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~G-l~~~~p~  658 (795)
T 4a2l_A          593 EDSFGRLWLST-NRGISCFNPETEKFRN-FTESDGLQSNQFNTASYCRTSVGQMYF-GGING-ITTFRPE  658 (795)
T ss_dssp             ECTTSCEEEEE-TTEEEEEETTTTEEEE-ECGGGTCSCSCEEEEEEEECTTSCEEE-EETTE-EEEECGG
T ss_pred             ECCCCCEEEEc-CCceEEEcCCCCcEEE-cCCcCCCccccCccCceeECCCCeEEE-ecCCc-eEEEcHH
Confidence            99999877766 5668889988776532 211  11 1222  4667778887666 56677 5556654

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.66  E-value=7.8e-15  Score=179.00  Aligned_cols=268  Identities=10%  Similarity=-0.002  Sum_probs=185.4

Q ss_pred             ccCCCccEEEEEECCCCCEEEEE--eCCCeEEEEEecCCCccccceEeccccccEE---------EEEEe--cCCCceEE
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQQLEIDAHVGNVN---------DLAFS--APCKQISV  458 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~--~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~---------~~~~s--~d~~~~~l  458 (1103)
                      +.+|...|..++|++++.++++.  +.++...||....+...+   .+..|...+.         ...|+  |||+.+ |
T Consensus        19 ~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~-l   94 (662)
T 3azo_A           19 VASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL-L   94 (662)
T ss_dssp             HHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE-E
T ss_pred             HhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE-E
Confidence            66789999999999887777777  557889999975443332   4556666665         66666  999941 4


Q ss_pred             EEEc-CCCceEEEeCC--CCceeEEeec-----CCCceEEEEeeecCCccEEEEEECC----------CeEEEEEcCCC-
Q 001310          459 ITCG-DDKTIKVWDAV--TGSRTYSFEG-----HGAPVYSLCPHAKENIHFIFSISVD----------GKIKAWLYDSL-  519 (1103)
Q Consensus       459 ~s~~-~d~~i~iwd~~--~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~s~~~d----------g~i~iwd~~~~-  519 (1103)
                      +..+ .+..|.+|++.  ++.....+..     |...+.+++|+  +||+.|++++.+          ..|.+||+.+. 
T Consensus        95 a~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~s--pDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~  172 (662)
T 3azo_A           95 VFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLL--PERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSA  172 (662)
T ss_dssp             EEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEE--TTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTT
T ss_pred             EEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEEC--CCCCEEEEEEecccCCCCCCceeEEEEEECCCCc
Confidence            4433 35667777765  2044555655     56678888885  577899988877          57999999872 


Q ss_pred             ----CeeEEec-CCCccEEEEEEccCCCEEEEEecCCC----CceeEEEEeCC-CC---eeEEEEecccccCCceEEEEE
Q 001310          520 ----GARVDYD-APGLGCTRMAYSANGRRLFSCGTSKE----GESFLVEWNES-EG---AIKRTYQGLQLQHNSVSVVHF  586 (1103)
Q Consensus       520 ----~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~~~v~~~~~  586 (1103)
                          .....+. .+...+..++|||||++|+.++.+..    ....|++||+. ++   +......++.   ..+..++|
T Consensus       173 ~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~---~~~~~~~~  249 (662)
T 3azo_A          173 AADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPE---EAIAQAEW  249 (662)
T ss_dssp             TTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETT---BCEEEEEE
T ss_pred             cccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCC---ceEcceEE
Confidence                2334444 45567788999999999998875432    13579999999 57   4444444434   67899999


Q ss_pred             cCCCCEEEEEeCCC--cEEEEECCCCeeEEEEcCCCCC------CCCceEEEecCCCEEEEEECCCeEEEE--EcCCCCe
Q 001310          587 DTAKDQILAAGDDH--VIKIWDMNKVQLLTTIDAGGGL------PENPRICFNKNGTLLAVIANENRIKIL--ETPESNS  656 (1103)
Q Consensus       587 ~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~g~~l~~~~~dg~i~iw--~~~~~~~  656 (1103)
                      +|||+.+++++.++  .|++||..+++.......+...      ..+..++|+|++++++++.. +.++||  +..+++ 
T Consensus       250 spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~-  327 (662)
T 3azo_A          250 APDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE-  327 (662)
T ss_dssp             CTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE-
T ss_pred             CCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc-
Confidence            99999777777777  6777777677655443332211      11567999999999999998 999999  544443 


Q ss_pred             eEeccccccceeee
Q 001310          657 VDAAGVLSDNLRKL  670 (1103)
Q Consensus       657 ~~~~~~~~~~i~~~  670 (1103)
                      +..+..+...+..+
T Consensus       328 ~~~l~~~~~~~~~~  341 (662)
T 3azo_A          328 LVDAAGPWTEWAAT  341 (662)
T ss_dssp             EEECCSSCCEEEEE
T ss_pred             EEEecCCCCeEEEE
Confidence            55666555555444

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.65  E-value=1.5e-13  Score=147.93  Aligned_cols=248  Identities=14%  Similarity=0.157  Sum_probs=178.3

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE-CCCCC
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW-SPDGS  409 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~-spdg~  409 (1103)
                      .+|-..+.+++++|+|+ ++++.+.++.|.+||.. ++.+.....             .....+|...+..+++ .++++
T Consensus        26 ~g~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~~-------------~~~~~~~~~~p~~i~~~~~~g~   90 (286)
T 1q7f_A           26 EGQFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFGE-------------CGKRDSQLLYPNRVAVVRNSGD   90 (286)
T ss_dssp             TTCBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEECC-------------BSSSTTCBSSEEEEEEETTTTE
T ss_pred             CCccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEecc-------------cCCCcccccCceEEEEEcCCCe
Confidence            35556899999999998 78888888999999987 554432110             0001235567899999 57787


Q ss_pred             EEEEEeC-CCeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee--cCC
Q 001310          410 LLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GHG  485 (1103)
Q Consensus       410 ~las~~~-d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~~  485 (1103)
                      ++++... ++.|.+|| .+++.+.   .+. .+...+.+++++++|+  ++++...++.|.+||. .++.+..+.  .+.
T Consensus        91 l~v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~  163 (286)
T 1q7f_A           91 IIVTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQ-NGNVLHKFGCSKHL  163 (286)
T ss_dssp             EEEEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECT-TSCEEEEEECTTTC
T ss_pred             EEEEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcC-CCCEEEEeCCCCcc
Confidence            7777643 78999999 4554333   232 3445789999999998  7788788899999994 566666664  345


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC--CccEEEEEEccCCCEEEEEecCCCCce-eEEEEeC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP--GLGCTRMAYSANGRRLFSCGTSKEGES-FLVEWNE  562 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~--~~~i~~~~~s~dg~~l~~~~~~~~~~~-~i~iwd~  562 (1103)
                      ..+..+++++  ++.++++...++.|++||... +....+...  ...+..++++++|+++++...    ++ .|.+||.
T Consensus       164 ~~p~~i~~~~--~g~l~v~~~~~~~i~~~~~~g-~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~  236 (286)
T 1q7f_A          164 EFPNGVVVND--KQEIFISDNRAHCVKVFNYEG-QYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ  236 (286)
T ss_dssp             SSEEEEEECS--SSEEEEEEGGGTEEEEEETTC-CEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT
T ss_pred             CCcEEEEECC--CCCEEEEECCCCEEEEEcCCC-CEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC
Confidence            5688888854  667778778899999999743 444445433  256889999999988877643    33 7999995


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKV  610 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~  610 (1103)
                       +++.+..+..+. ....+..++++|+++.+++ +.++.|++|++...
T Consensus       237 -~g~~~~~~~~~~-~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~  281 (286)
T 1q7f_A          237 -DGQLISALESKV-KHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL  281 (286)
T ss_dssp             -TSCEEEEEEESS-CCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred             -CCCEEEEEcccC-CCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence             566777776543 1234789999999976655 67999999998653

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.63  E-value=1e-13  Score=153.09  Aligned_cols=274  Identities=10%  Similarity=0.024  Sum_probs=188.6

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ..|.+++|+|++. .++..+.++.++.|.   ++....                   +.++...+.+++|+|+|++++++
T Consensus         6 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~---~~~~~~-------------------~~~~~~~~~~~~~~~~g~l~~~~   62 (333)
T 2dg1_A            6 QDLPTLFYSGKSN-SAVPIISESELQTIT---AEPWLE-------------------ISKKGLQLEGLNFDRQGQLFLLD   62 (333)
T ss_dssp             CCCCBCCSCGGGG-CSSCCCCGGGSCEEE---CEEEEE-------------------EESSCCCEEEEEECTTSCEEEEE
T ss_pred             cccceeeecCCcc-ceeEEeecccCcccc---cceeEE-------------------EeccCccccCcEECCCCCEEEEE
Confidence            4688999999997 466667788999993   333222                   44566778999999999988888


Q ss_pred             eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC----CceEEEeCCCCceeEEee--cCCCce
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD----KTIKVWDAVTGSRTYSFE--GHGAPV  488 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~~--~~~~~v  488 (1103)
                      ..++.|.+||..+++...   ....+...+.+++|+++|+  ++++...+    +.|.+||..++.....+.  .+...+
T Consensus        63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~  137 (333)
T 2dg1_A           63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI  137 (333)
T ss_dssp             TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred             CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence            888999999998875332   1224567899999999998  66666655    689999988877654443  244568


Q ss_pred             EEEEeeecCCccEEEEEEC------CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          489 YSLCPHAKENIHFIFSISV------DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~------dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      .++++.+  ++.++++...      .+.|..++.++.+... +......+..++|+|+|+.++.+..   .++.|++||.
T Consensus       138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~  211 (333)
T 2dg1_A          138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL  211 (333)
T ss_dssp             EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred             cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence            8888854  6666666553      2456556555433332 2222235788999999997766542   2456999998


Q ss_pred             CC-CeeEEEEe-----cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC----CCCCceEEEec
Q 001310          563 SE-GAIKRTYQ-----GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG----LPENPRICFNK  632 (1103)
Q Consensus       563 ~~-~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~  632 (1103)
                      .+ +.....+.     ... ....+..++++++++.+++...++.|.+||. +++.+..+..+..    ...+.+++|+|
T Consensus       212 ~~~g~~~~~~~~~~~~~~~-~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~  289 (333)
T 2dg1_A          212 EDDGVTIQPFGATIPYYFT-GHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIP  289 (333)
T ss_dssp             CTTSSSEEEEEEEEEEECC-SSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECT
T ss_pred             cCCCcCcccccceEEEecC-CCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECC
Confidence            64 33332211     111 0136788999999988777778899999998 5666666654421    11478999999


Q ss_pred             CCCEEEEEECCC
Q 001310          633 NGTLLAVIANEN  644 (1103)
Q Consensus       633 ~g~~l~~~~~dg  644 (1103)
                      |++.|++++.++
T Consensus       290 dg~~L~v~~~~g  301 (333)
T 2dg1_A          290 GTNQLIICSNDI  301 (333)
T ss_dssp             TSCEEEEEEECG
T ss_pred             CCCEEEEEeCcc
Confidence            988777666653

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.61  E-value=1.9e-13  Score=167.43  Aligned_cols=250  Identities=10%  Similarity=-0.002  Sum_probs=175.7

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCC-----eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKH-----IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~-----~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--  466 (1103)
                      +|...+..++|||||++||.+..++     .|++||+.+++....  .+  ....+..++|+|||+  .|+.++.++.  
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~--~~~~~~~~~wspDg~--~l~~~~~~~~~~  195 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VL--ERVKFSCMAWTHDGK--GMFYNAYPQQDG  195 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EE--EEECSCCEEECTTSS--EEEEEECCCCSS
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--cc--cCcccceEEEEeCCC--EEEEEEECCccc
Confidence            4556789999999999999876543     899999999875431  12  222367899999999  5776666655  


Q ss_pred             --------------eEEEeCCCCcee--EEee--cCCCceEEEEeeecCCccEEEEEEC-----CCeEEEEEcCC-----
Q 001310          467 --------------IKVWDAVTGSRT--YSFE--GHGAPVYSLCPHAKENIHFIFSISV-----DGKIKAWLYDS-----  518 (1103)
Q Consensus       467 --------------i~iwd~~~~~~~--~~~~--~~~~~v~~~~~~~~~~~~~l~s~~~-----dg~i~iwd~~~-----  518 (1103)
                                    |++|++.+++..  ..+.  .|...+..+.|  ++||++|+..+.     +..|.+||+.+     
T Consensus       196 ~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~  273 (710)
T 2xdw_A          196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGI  273 (710)
T ss_dssp             CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSS
T ss_pred             cccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEE--cCCCCEEEEEEEccCCCccEEEEEECccccccc
Confidence                          999999887632  2223  24555677777  557788887765     56899999986     


Q ss_pred             -CC-eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEE
Q 001310          519 -LG-ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQIL  594 (1103)
Q Consensus       519 -~~-~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~  594 (1103)
                       +. ....+..+...+.. .|+++|+.|+..+........|++||+.++..  .+.+..+. ....+..++|++++..++
T Consensus       274 ~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~lv~  351 (710)
T 2xdw_A          274 TGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH-EKDVLEWVACVRSNFLVL  351 (710)
T ss_dssp             CSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC-SSCEEEEEEEETTTEEEE
T ss_pred             CCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCC-CCCeEEEEEEEcCCEEEE
Confidence             42 34444444444443 58899999888775443467899999988742  34444443 113678889987777777


Q ss_pred             EEeCCCc--EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001310          595 AAGDDHV--IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1103)
Q Consensus       595 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~  655 (1103)
                      +...++.  |++|++.+++.+..+..+  ...+..++++|+++.++....    .+++..||+.+++
T Consensus       352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  416 (710)
T 2xdw_A          352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (710)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence            7888874  666787778877777765  334678889999887664432    4789999998775

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.60  E-value=2.6e-13  Score=146.78  Aligned_cols=249  Identities=12%  Similarity=0.049  Sum_probs=176.2

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ..+..+..+.....+++|+|+|+.+++++..++.|..||..++  ...                   +..+...+.++++
T Consensus        18 ~~~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~-------------------~~~~~~~~~~l~~   76 (296)
T 3e5z_A           18 AEARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSP-------------------EMHPSHHQNGHCL   76 (296)
T ss_dssp             CCCEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEE-------------------EESSCSSEEEEEE
T ss_pred             CcEEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEE-------------------EECCCCCcceeeE
Confidence            3445566666688999999999877889999999999999877  322                   3346678999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccc-cccEEEEEEecCCCceEEEE----Ec-------------CCCc
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CG-------------DDKT  466 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s----~~-------------~d~~  466 (1103)
                      +|+|+++++...++.|.+||..+++.........+. ...+..++++|+|+  ++++    |+             ..+.
T Consensus        77 ~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~  154 (296)
T 3e5z_A           77 NKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRW  154 (296)
T ss_dssp             CTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCE
T ss_pred             CCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcE
Confidence            999998888777789999999887633211111111 23467899999998  6776    32             1234


Q ss_pred             eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-CCCe---eEEecCCCccEEEEEEccCCC
Q 001310          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-SLGA---RVDYDAPGLGCTRMAYSANGR  542 (1103)
Q Consensus       467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-~~~~---~~~~~~~~~~i~~~~~s~dg~  542 (1103)
                      |..++.. ++ +..+..+......++|+  +++..+++.+.++.|.+|+++ ++..   ...+......+..++++++|+
T Consensus       155 l~~~~~~-g~-~~~~~~~~~~~~gi~~s--~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~  230 (296)
T 3e5z_A          155 VFRLAPD-GT-LSAPIRDRVKPNGLAFL--PSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGL  230 (296)
T ss_dssp             EEEECTT-SC-EEEEECCCSSEEEEEEC--TTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSC
T ss_pred             EEEECCC-CC-EEEeecCCCCCccEEEC--CCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCC
Confidence            5555544 44 44555666777888885  466777777888999999987 3333   223333344567899999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEE-cCCCCEEEEEeCCCcEEEEECCCCee
Q 001310          543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-DTAKDQILAAGDDHVIKIWDMNKVQL  612 (1103)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~  612 (1103)
                      +.++.      .+.|.+||.. ++.+..+..+.   . +.+++| +|+++.|++++.+ .+..++..+.+.
T Consensus       231 l~v~~------~~~v~~~~~~-g~~~~~~~~~~---~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~  289 (296)
T 3e5z_A          231 IWASA------GDGVHVLTPD-GDELGRVLTPQ---T-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL  289 (296)
T ss_dssp             EEEEE------TTEEEEECTT-SCEEEEEECSS---C-CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred             EEEEc------CCeEEEECCC-CCEEEEEECCC---C-ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence            77665      2349999986 77777777766   4 888999 5888889888875 455566665543

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.59  E-value=4.2e-13  Score=149.08  Aligned_cols=285  Identities=11%  Similarity=0.041  Sum_probs=174.7

Q ss_pred             ceEEEEEcCCCCEEEEEe---------CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC---Ce--
Q 001310          580 SVSVVHFDTAKDQILAAG---------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE---NR--  645 (1103)
Q Consensus       580 ~v~~~~~~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d---g~--  645 (1103)
                      .+...++  ||++++...         .++.|++||+.+++....       ..+..++|+|||++|+..+.+   +.  
T Consensus        16 ~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~l-------~~~~~~~~SpDg~~la~~~~~~~~~~~~   86 (347)
T 2gop_A           16 YLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRFI-------ENATMPRISPDGKKIAFMRANEEKKVSE   86 (347)
T ss_dssp             EEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEEE-------ESCEEEEECTTSSEEEEEEEETTTTEEE
T ss_pred             EcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEEc-------ccCCCeEECCCCCEEEEEEeccCCCcce
Confidence            4566667  788777642         256799999998875433       236789999999999987754   23  


Q ss_pred             EEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1103)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1103)
                      |.+|++.+++......                                                                
T Consensus        87 l~~~~~~~g~~~~l~~----------------------------------------------------------------  102 (347)
T 2gop_A           87 IWVADLETLSSKKILE----------------------------------------------------------------  102 (347)
T ss_dssp             EEEEETTTTEEEEEEE----------------------------------------------------------------
T ss_pred             EEEEECCCCceEEEEc----------------------------------------------------------------
Confidence            6666666543221110                                                                


Q ss_pred             eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1103)
Q Consensus       726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  805 (1103)
                             ... +..++|+|||+.|+.++.+..       ..                                 .....+
T Consensus       103 -------~~~-~~~~~wspdg~~l~~~~~~~~-------~~---------------------------------~~~~~~  134 (347)
T 2gop_A          103 -------AKN-IRSLEWNEDSRKLLIVGFKRR-------ED---------------------------------EDFIFE  134 (347)
T ss_dssp             -------ESE-EEEEEECTTSSEEEEEEECCC-------C----------------------------------------
T ss_pred             -------CCC-ccceeECCCCCEEEEEEccCC-------Cc---------------------------------CCcEEE
Confidence                   112 677889999988887765410       00                                 000011


Q ss_pred             eEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC-------eEEEEEcCCcee
Q 001310          806 PCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-------TILIYNARSSEV  878 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-------~v~iwd~~~~~~  878 (1103)
                      ..+.+..+|.-+.......|.+||+.+++.+..+.. . .+..++|+| |+ +++++..++       ...||.+.+++.
T Consensus       135 ~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp-dg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~  210 (347)
T 2gop_A          135 DDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR-DK-IVVNVPHREIIPQYFKFWDIYIWEDGKE  210 (347)
T ss_dssp             --CCCC---------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET-TE-EEEEEECCCSSCCSSCCEEEEEEETTEE
T ss_pred             cccceeecCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC-Ce-EEEEEecccccccccccccEEEeCCCce
Confidence            122233344332222235689999998877455544 3 788999999 78 777776542       334444435554


Q ss_pred             EEEeccCCCCEEEEEEccCCCEEEEEeCC--------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceE-EEEcCCCC
Q 001310          879 ISKLEGHSKRVTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH-IQFHKDQT  949 (1103)
Q Consensus       879 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~fs~dg~  949 (1103)
                       ..+..+ ..+..+  ||||++|+.++.+        ..|.+||  +++.     .....++.   ..+.. +.|+ || 
T Consensus       211 -~~l~~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~-----~~l~~~~~---~~~~~~~~~s-dg-  274 (347)
T 2gop_A          211 -EKMFEK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEV-----MGILDEVD---RGVGQAKIKD-GK-  274 (347)
T ss_dssp             -EEEEEE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCE-----EESSTTCC---SEEEEEEEET-TE-
T ss_pred             -EEeccC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCce-----EeccccCC---cccCCccEEc-Cc-
Confidence             344444 555554  9999999888754        3677887  4442     12222222   24665 8999 88 


Q ss_pred             EEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcE-EEEeCCCce
Q 001310          950 RFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL-SIHEASNLE 1011 (1103)
Q Consensus       950 ~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v-~vWd~~~~~ 1011 (1103)
                      ++++ ..++.+++| +.+++.... . .+...|.+++|++  .++++++.++.. .+|.+. ++
T Consensus       275 ~~~~~~~~~~~~l~-~~~g~~~~~-~-~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~-g~  332 (347)
T 2gop_A          275 VYFTLFEEGSVNLY-IWDGEIKPI-A-KGRHWIMGFDVDE--IVVYLKETATRLRELFTWD-GE  332 (347)
T ss_dssp             EEEEEEETTEEEEE-EESSSEEEE-E-CSSSEEEEEEESS--SEEEEEECSSSCCEEEEES-SS
T ss_pred             EEEEEecCCcEEEE-EcCCceEEE-e-cCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC-Cc
Confidence            6666 478899999 876665332 3 3477899999999  677777777665 788776 54

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.59  E-value=1.6e-13  Score=168.00  Aligned_cols=250  Identities=10%  Similarity=-0.008  Sum_probs=172.9

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +|+..+..++|||||++++.+.+.+|    +|++||+.+|+.+.. .                 +  +...+..++||||
T Consensus       122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~-~-----------------~--~~~~~~~~~wspD  181 (710)
T 2xdw_A          122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-V-----------------L--ERVKFSCMAWTHD  181 (710)
T ss_dssp             TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-E-----------------E--EEECSCCEEECTT
T ss_pred             CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc-c-----------------c--cCcccceEEEEeC
Confidence            45557889999999996444433333    899999999986642 1                 1  1123667999999


Q ss_pred             CCEEEEEeCCCe----------------EEEEEecCCCccccc-eEeccccccEEEEEEecCCCceEEEEEcC-----CC
Q 001310          408 GSLLGVAYSKHI----------------VQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGD-----DK  465 (1103)
Q Consensus       408 g~~las~~~d~~----------------i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-----d~  465 (1103)
                      |+.|+.++.++.                |++|++.++...... .....|...+..+.|+|||+.  |+..+.     +.
T Consensus       182 g~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~  259 (710)
T 2xdw_A          182 GKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVN  259 (710)
T ss_dssp             SSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCC
T ss_pred             CCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCcc
Confidence            999999987765                999999887532111 112235566889999999995  444332     56


Q ss_pred             ceEEEeCCC------Cc-eeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCe--eEEecCCC--c
Q 001310          466 TIKVWDAVT------GS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGA--RVDYDAPG--L  530 (1103)
Q Consensus       466 ~i~iwd~~~------~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~--~~~~~~~~--~  530 (1103)
                      .|++||+.+      +. ....+..+...+... +++  +|..|+..+..    +.|.+||+.+...  ...+..+.  .
T Consensus       260 ~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~  336 (710)
T 2xdw_A          260 RLWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKD  336 (710)
T ss_dssp             EEEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSC
T ss_pred             EEEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCC
Confidence            899999987      53 466676676666553 443  45556555543    3699999987642  23333333  3


Q ss_pred             cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEE
Q 001310          531 GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWD  606 (1103)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd  606 (1103)
                      .+..++|++++.++++...  ++...|++|++.+|+.++.+..+.   ..+..+.++|+++.++...    ..++|+.||
T Consensus       337 ~~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~---~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d  411 (710)
T 2xdw_A          337 VLEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCD  411 (710)
T ss_dssp             EEEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEE
T ss_pred             eEEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCC---ceEEEEecCCCCCEEEEEEeCCCCCCEEEEEE
Confidence            6788999877776766654  335678999987888777777655   7788999999988776532    457899999


Q ss_pred             CCCCe
Q 001310          607 MNKVQ  611 (1103)
Q Consensus       607 ~~~~~  611 (1103)
                      +.+++
T Consensus       412 ~~tg~  416 (710)
T 2xdw_A          412 LTKEE  416 (710)
T ss_dssp             TTSSS
T ss_pred             CCCCc
Confidence            98877

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.59  E-value=3.4e-13  Score=147.70  Aligned_cols=278  Identities=10%  Similarity=-0.019  Sum_probs=191.2

Q ss_pred             CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccc
Q 001310          355 NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQ  434 (1103)
Q Consensus       355 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~  434 (1103)
                      .+++|.+||.++++.......          ...   -.........+++. +++..++...++.|.+||..+++.+.  
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~----------~~n---~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~--   78 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFY----------RAN---GFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVG--   78 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHH----------HHH---SSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEE--
T ss_pred             CCceEEEEECCCCEEhhhhHh----------hhc---CcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEE--
Confidence            378999999999886543100          000   01122456778774 45555666667899999999987655  


Q ss_pred             eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC-----CceEEEEeeecCCccEEEEEE-CC
Q 001310          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG-----APVYSLCPHAKENIHFIFSIS-VD  508 (1103)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~~~l~s~~-~d  508 (1103)
                       .+. .......++++++++  ++++...++.|.+||..+++....+....     .....+++  . ++.++++.. .+
T Consensus        79 -~i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~  151 (328)
T 3dsm_A           79 -RIT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ  151 (328)
T ss_dssp             -EEE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred             -EcC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence             333 345688999999985  56666578999999999999887776433     14456666  2 444444444 48


Q ss_pred             CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC------ceeEEEEeCCCCeeEEEEecccccCCceE
Q 001310          509 GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG------ESFLVEWNESEGAIKRTYQGLQLQHNSVS  582 (1103)
Q Consensus       509 g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~  582 (1103)
                      +.|.++|..+.+....+... .....++++|+|++++++..+...      .+.|.++|..+++....+....  .....
T Consensus       152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~  228 (328)
T 3dsm_A          152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPS  228 (328)
T ss_dssp             CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCE
T ss_pred             CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCC--CCCce
Confidence            99999999988776666543 344678999999977665432100      2679999999999887775432  23688


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec-CCCEEEEE----ECCCeEEEEEcCCCCee
Q 001310          583 VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK-NGTLLAVI----ANENRIKILETPESNSV  657 (1103)
Q Consensus       583 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~----~~dg~i~iw~~~~~~~~  657 (1103)
                      .++|+|++++++++..  .|.+||..+++................++++| ++.++++.    ..++.|.+|+.. ++.+
T Consensus       229 ~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~  305 (328)
T 3dsm_A          229 EVQLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLI  305 (328)
T ss_dssp             EEEECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEE
T ss_pred             eEEEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEE
Confidence            9999999999988765  89999999887642111111123467899999 55555555    567899999998 7777


Q ss_pred             Eecc
Q 001310          658 DAAG  661 (1103)
Q Consensus       658 ~~~~  661 (1103)
                      ..+.
T Consensus       306 ~~i~  309 (328)
T 3dsm_A          306 DEFY  309 (328)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6654

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=9.9e-09  Score=126.92  Aligned_cols=592  Identities=13%  Similarity=0.099  Sum_probs=336.6

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ..|.+|.-.++|..++  |+.+| +..||-.+   ...     +.......  ..  ..-....|.++...++|..|-.|
T Consensus        19 n~V~~I~qD~~G~lWi--gT~~G-L~ryDG~~---f~~-----~~~~~~~~--~~--~~l~~n~I~~i~~d~~g~~lWig   83 (781)
T 3v9f_A           19 NYVLSITQDKQGFLWF--ATEEG-LNKFDGTR---FIT-----YYKEEQSS--SV--QSITGNELNEVYTDPVQPVIWIA   83 (781)
T ss_dssp             SBEEEEEECTTSCEEE--EESSC-EEEECSSS---EEE-----ECCCSSCS--SS--CCCSCSCEEEEEECSSSSEEEEE
T ss_pred             CEeEEEEECCCCCEEE--ccCCc-CccccCCc---eEE-----EEcCCCCC--cc--ccccccccceEEEcCCCCEEEEE
Confidence            4789999999997444  44555 66677332   211     11000000  00  00123569999999888845567


Q ss_pred             eCCCeEEEEEecCCCccccceE-ecc---ccccEEEEEEec--CCCceEEEEEcCCCceEEEeCCCCceeEEeec-----
Q 001310          415 YSKHIVQLYAYHGGSDARQQLE-IDA---HVGNVNDLAFSA--PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-----  483 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~-l~~---h~~~v~~~~~s~--d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-----  483 (1103)
                      +.++-+..||..+++....... ...   ....|.++....  +|.   +..++.++.|..+|..+++... +..     
T Consensus        84 t~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~-~~~~~~~~  159 (781)
T 3v9f_A           84 TQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTH-YNKSTVPA  159 (781)
T ss_dssp             ESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEE-ESTTTCTT
T ss_pred             eCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEe-eccCcccC
Confidence            6774599999887542110000 000   123688888877  665   4445545568899987765433 321     


Q ss_pred             -CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-------CCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310          484 -HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1103)
Q Consensus       484 -~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1103)
                       ....|.++...  .++ .|..++.++-+..||..+.+......       .....|.++...++|.+.+...     . 
T Consensus       160 l~~~~i~~i~~d--~~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~-  230 (781)
T 3v9f_A          160 LPSEQTWTATEA--EDG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K-  230 (781)
T ss_dssp             CSCCCEEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred             CCccceEEEEEC--CCC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence             13457776653  244 45556666568888877654332211       1234688999988888776542     1 


Q ss_pred             eEEEEeCCCCeeEEEEecc----cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc-------CC-----
Q 001310          556 FLVEWNESEGAIKRTYQGL----QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID-------AG-----  619 (1103)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~-----  619 (1103)
                      -+.+||..+++........    ......|.++...++|. +..|+..+-|.++|..++.......       ..     
T Consensus       231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~  309 (781)
T 3v9f_A          231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS  309 (781)
T ss_dssp             EEEEEETTTTEEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred             cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence            2899998877654322111    11235799998887764 6667765678899987765432211       00     


Q ss_pred             CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310          620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1103)
Q Consensus       620 ~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1103)
                      -....|.++...++|. |-+|+.++-|..++........ +..          .                      +.. 
T Consensus       310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~-~~~----------~----------------------~~~-  354 (781)
T 3v9f_A          310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHT-WSY----------S----------------------PTQ-  354 (781)
T ss_dssp             BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEE-EC------------------------------------C-
T ss_pred             CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCccee-ecc----------C----------------------ccc-
Confidence            0123467788888776 4456655667777765432111 000          0                      000 


Q ss_pred             cceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccC
Q 001310          700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVP  779 (1103)
Q Consensus       700 ~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~  779 (1103)
                                                 ..+.......|.++...++|. +..++.++-+..|+......           
T Consensus       355 ---------------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-----------  395 (781)
T 3v9f_A          355 ---------------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA-----------  395 (781)
T ss_dssp             ---------------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE-----------
T ss_pred             ---------------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE-----------
Confidence                                       000001234578888888877 44555555566666432110           


Q ss_pred             CeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEec--CCCCCeeEEEEcCCCCC
Q 001310          780 PRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM--PPSPTATSLAFNPHDNN  857 (1103)
Q Consensus       780 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~--~~~~~i~~l~~s~~d~~  857 (1103)
                       ..+...           .......|.+++..++|.+.+...++.+..++..+++......  .....|.++...+ +++
T Consensus       396 -~~~~~~-----------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~  462 (781)
T 3v9f_A          396 -IYNKEN-----------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKK  462 (781)
T ss_dssp             -ECC----------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSE
T ss_pred             -EEccCC-----------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCC
Confidence             000000           0014567899999999988886656778899987765433221  2346789999887 665


Q ss_pred             EEEEEeCCCeEEEEEcCCceeEEEeccC-----CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCc
Q 001310          858 VIAIGMDDSTILIYNARSSEVISKLEGH-----SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1103)
Q Consensus       858 ~lasg~~dg~v~iwd~~~~~~~~~l~~h-----~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~  932 (1103)
                      + ..|+. +-|..||..+++........     ...|.++...++|.+.+.....| |..+|..+++...   +....+.
T Consensus       463 l-wigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~~---~~~~~~l  536 (781)
T 3v9f_A          463 I-WIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVRK---FNQYEGF  536 (781)
T ss_dssp             E-EEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEEE---ECTTTTC
T ss_pred             E-EEEEC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEEE---ccCCCCC
Confidence            4 44555 55889998876543322212     46799999999988766443345 7888887755332   2212221


Q ss_pred             ccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCC---CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          933 MTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       933 ~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                        ....|.++...++|.+.+.+.+|-+..||..+++... +...   ....|.++...++|.+.++ +.+| |..|+..+
T Consensus       537 --~~~~i~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lW~~-t~~G-l~~~~~~~  611 (781)
T 3v9f_A          537 --CSNTINQIYRSSKGQMWLATGEGLVCFPSARNFDYQV-FQRKEGLPNTHIRAISEDKNGNIWAS-TNTG-ISCYITSK  611 (781)
T ss_dssp             --SCSCEEEEEECTTSCEEEEETTEEEEESCTTTCCCEE-ECGGGTCSCCCCCEEEECSSSCEEEE-CSSC-EEEEETTT
T ss_pred             --CCCeeEEEEECCCCCEEEEECCCceEEECCCCCcEEE-ccccCCCCCceEEEEEECCCCCEEEE-cCCc-eEEEECCC
Confidence              1246899999999998777665544889987765332 1111   1346788888888876654 4555 78889887


Q ss_pred             ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccC
Q 001310         1010 LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPN 1072 (1103)
Q Consensus      1010 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~ 1072 (1103)
                      ++.. .+....-++               ......-++...++ |. |..|+.+| +..+++.
T Consensus       612 ~~~~-~~~~~dGl~---------------~~~f~~~~~~~~~~-G~-l~~g~~~G-l~~f~p~  655 (781)
T 3v9f_A          612 KCFY-TYDHSNNIP---------------QGSFISGCVTKDHN-GL-IYFGSING-LCFFNPD  655 (781)
T ss_dssp             TEEE-EECGGGTCC---------------SSCEEEEEEEECTT-SC-EEEEETTE-EEEECSC
T ss_pred             CceE-EecccCCcc---------------ccccccCceEECCC-CE-EEEECCCc-eEEEChh
Confidence            6543 333111111               11122224455555 44 66677777 5666763

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.58  E-value=1.1e-11  Score=137.40  Aligned_cols=204  Identities=10%  Similarity=0.014  Sum_probs=141.3

Q ss_pred             eEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEE-ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001310          806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1103)
                      ..++++|||++|++++   ++.|.++| .+++.+.+ +....    ++.+.|++.+.+++.+.||.+.++|. +++....
T Consensus       128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~  201 (373)
T 2mad_H          128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA  201 (373)
T ss_pred             cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence            4678888988888775   36799999 99988877 65322    24455645567777888999999999 8876633


Q ss_pred             ec-----cCCCC-EEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCc----ccCCCCceEEEEcCCCCEE
Q 001310          882 LE-----GHSKR-VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV----MTLAPSETHIQFHKDQTRF  951 (1103)
Q Consensus       882 l~-----~h~~~-V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~----~~~~~~v~~l~fs~dg~~l  951 (1103)
                      ..     ....+ .....+++++..++..+..+.+.+.|+.++.......+......    .-.......++|+||++.+
T Consensus       202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l  281 (373)
T 2mad_H          202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI  281 (373)
T ss_pred             EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence            22     11122 23356777776655556788999999976543222222211110    0001234458899999988


Q ss_pred             EEEe-----------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCceeEEeec
Q 001310          952 LLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       952 ~~~~-----------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      .++.           .+.|.++|+.+++.+..+..+  ....+++|+|||+ .++++. .++.|.+||+.+++.++++.
T Consensus       282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~g--~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i~  358 (373)
T 2mad_H          282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLG--HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTV  358 (373)
T ss_pred             EEEeccCCcccccCCCCeEEEEECCCCEEEEEEECC--CCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeeec
Confidence            8742           257999999999998886543  3688999999999 777776 58999999999999998853

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.57  E-value=1.5e-11  Score=133.11  Aligned_cols=285  Identities=11%  Similarity=0.057  Sum_probs=195.4

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~  409 (1103)
                      +..+...+.+++++|+|+ +.++...++.|.+||.. ++.... .                 ...+...+.+++++++|.
T Consensus        10 ~~~~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~   69 (299)
T 2z2n_A           10 LTNQDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY-P-----------------LPTPDAKVMCLTISSDGE   69 (299)
T ss_dssp             CCSSSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE-E-----------------CSSTTCCEEEEEECTTSC
T ss_pred             CCCcCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe-c-----------------CCcccCceeeEEECCCCC
Confidence            445556899999999998 66666667899999988 543221 0                 223457899999999999


Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE-eecCCCce
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPV  488 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~~~~~~~v  488 (1103)
                      ++++...++.|..||.. ++ +.. ..+......+.++++.++|.  ++++...++.|.+||. +++.... ...+...+
T Consensus        70 l~v~~~~~~~i~~~~~~-g~-~~~-~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~  143 (299)
T 2z2n_A           70 VWFTENAANKIGRITKK-GI-IKE-YTLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITD-DGKIREYELPNKGSYP  143 (299)
T ss_dssp             EEEEETTTTEEEEECTT-SC-EEE-EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECT-TCCEEEEECSSTTCCE
T ss_pred             EEEeCCCCCeEEEECCC-Cc-EEE-EeCCCcCCCceeeEECCCCC--EEEEecCCceEEEECC-CCCEEEecCCCCCCCC
Confidence            88887778889999976 32 221 12223455789999999998  6777777889999998 6554432 23345567


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE-ecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI  567 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~  567 (1103)
                      ..+++.  +++.++++...++.|..||. +++.... .......+..++++++|+..++...    .+.|..||. +++.
T Consensus       144 ~~i~~~--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~----~~~i~~~~~-~g~~  215 (299)
T 2z2n_A          144 SFITLG--SDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEII----GNKIGRITT-SGEI  215 (299)
T ss_dssp             EEEEEC--TTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCE
T ss_pred             ceEEEc--CCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccC----CceEEEECC-CCcE
Confidence            888874  46667777767789999998 4444332 3334456889999999997665432    456999998 6664


Q ss_pred             EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310          568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1103)
Q Consensus       568 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~  647 (1103)
                      .. +.... ....+..++++++++..++...++.|.+||. +++ +..+........+.++++ ++|++.++.. .+.+.
T Consensus       216 ~~-~~~~~-~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~-~~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~  289 (299)
T 2z2n_A          216 TE-FKIPT-PNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNI-IEEYPIQIKSAEPHGICF-DGETIWFAME-CDKIG  289 (299)
T ss_dssp             EE-EECSS-TTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTE-EEEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEE
T ss_pred             EE-EECCC-CCCCceeEEECCCCCEEEeccCCceEEEECC-CCc-eEEEeCCCCCCccceEEe-cCCCEEEEec-CCcEE
Confidence            43 32211 1357899999999986666557889999998 454 334433333345788999 8887666654 56677


Q ss_pred             EEEcCCC
Q 001310          648 ILETPES  654 (1103)
Q Consensus       648 iw~~~~~  654 (1103)
                      .++..++
T Consensus       290 ~~~~~~~  296 (299)
T 2z2n_A          290 KLTLIKD  296 (299)
T ss_dssp             EEEEC--
T ss_pred             EEEcCcc
Confidence            7776654

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.57  E-value=5.4e-13  Score=146.08  Aligned_cols=272  Identities=8%  Similarity=0.032  Sum_probs=184.1

Q ss_pred             cccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecC
Q 001310          706 AENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQP  785 (1103)
Q Consensus       706 ~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~  785 (1103)
                      .+++|.++|..+.+....................+.+. +++.+++...++.+.+||...                    
T Consensus        15 ~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t--------------------   73 (328)
T 3dsm_A           15 SNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINT--------------------   73 (328)
T ss_dssp             CCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTT--------------------
T ss_pred             CCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcc--------------------
Confidence            46788888876543222110000011122345667774 344455555568888877543                    


Q ss_pred             CCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE-cCCeEEEEEcCCceeeEEecCCC-----CCeeEEEEcCCCCCEE
Q 001310          786 RHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPS-----PTATSLAFNPHDNNVI  859 (1103)
Q Consensus       786 ~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~-~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~l~~s~~d~~~l  859 (1103)
                        ++.+....     .......++++++++.+++. .++.|.+||..+++....+....     .....+++ . +++++
T Consensus        74 --~~~~~~i~-----~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~-~-~~~ly  144 (328)
T 3dsm_A           74 --FKEVGRIT-----GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ-Y-GKYVY  144 (328)
T ss_dssp             --CCEEEEEE-----CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE-E-TTEEE
T ss_pred             --cEEEEEcC-----CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE-E-CCEEE
Confidence              33222221     33567889999999666665 37999999999999887776433     14566777 3 56666


Q ss_pred             EEEe-CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC----------CeEEEEEcCCCceeeeeeeec
Q 001310          860 AIGM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD----------AQIFVWDVDGWGIQTCRSLQT  928 (1103)
Q Consensus       860 asg~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d----------g~I~iwd~~~~~~~~~~~~~~  928 (1103)
                      ++.. .++.|.++|..+++.+..+... .....++++|+|++++++..+          +.|.++|..+++...  .+..
T Consensus       145 v~~~~~~~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~--~~~~  221 (328)
T 3dsm_A          145 VNCWSYQNRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEK--QFKF  221 (328)
T ss_dssp             EEECTTCCEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEE--EEEC
T ss_pred             EEcCCCCCEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEE--EEec
Confidence            6554 4889999999999988877643 345689999999988877655          789999999877543  2332


Q ss_pred             CCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEE-eeCCCCcCeEEEEEccC-CCEEEEE----ecCCcE
Q 001310          929 PDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQ-WFPISSVPISQATFSCD-CRMVFTS----FVDGTL 1002 (1103)
Q Consensus       929 ~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~-~~~~h~~~v~~l~fs~d-g~~l~t~----~~dg~v 1002 (1103)
                      ..+     ..+..++|+||+++|.++.. .|.+||..+++.... +...+......++++|+ +..+++.    ..++.|
T Consensus       222 ~~g-----~~p~~la~~~d~~~lyv~~~-~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V  295 (328)
T 3dsm_A          222 KLG-----DWPSEVQLNGTRDTLYWINN-DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIV  295 (328)
T ss_dssp             CTT-----CCCEEEEECTTSCEEEEESS-SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEE
T ss_pred             CCC-----CCceeEEEecCCCEEEEEcc-EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEE
Confidence            222     14789999999999988754 999999998876432 12222467889999995 4555554    467899


Q ss_pred             EEEeCCCceeEEeec
Q 001310         1003 SIHEASNLEVQCRIL 1017 (1103)
Q Consensus      1003 ~vWd~~~~~~~~~~~ 1017 (1103)
                      .+||.. |+++.++.
T Consensus       296 ~v~d~~-g~~~~~i~  309 (328)
T 3dsm_A          296 YRYSPQ-GKLIDEFY  309 (328)
T ss_dssp             EEECTT-CCEEEEEE
T ss_pred             EEECCC-CCEEEEEE
Confidence            999998 88887776

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.56  E-value=3.2e-13  Score=164.89  Aligned_cols=249  Identities=11%  Similarity=-0.003  Sum_probs=166.5

Q ss_pred             cCCCccEEEEEECCCCCEEEEE-----eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc-
Q 001310          393 RDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT-  466 (1103)
Q Consensus       393 ~~h~~~V~~~~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~-  466 (1103)
                      .+|...+..++|||||++||.+     +.+.+|++||+.+++.+... .+...  ....++|+|||+  .|+.++.|.. 
T Consensus       117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~~~~~--~~~~~~wspDg~--~l~~~~~d~~~  191 (695)
T 2bkl_A          117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-VIEGG--KYATPKWTPDSK--GFYYEWLPTDP  191 (695)
T ss_dssp             SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-CBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred             cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-ccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence            3567789999999999999954     33468999999998754110 11111  126899999999  6777777766 


Q ss_pred             ------------eEEEeCCCCc----eeEEeecCCCceEEEEeeecCCccEEEEEECCC----eEEEEEcCCCCeeEEec
Q 001310          467 ------------IKVWDAVTGS----RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG----KIKAWLYDSLGARVDYD  526 (1103)
Q Consensus       467 ------------i~iwd~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg----~i~iwd~~~~~~~~~~~  526 (1103)
                                  |++|++.++.    .+.....|...+.++.++  +||++|+..+.++    .|.+|+..++.. ..+.
T Consensus       192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S--pDG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~  268 (695)
T 2bkl_A          192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS--RDGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV  268 (695)
T ss_dssp             TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC--TTSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred             CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC--CCCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence                        9999999886    333333455677777774  5777887777665    566665544433 3333


Q ss_pred             CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee---EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1103)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  603 (1103)
                      .+...+....+ ++|. ++..+.....+..|++||+.++..   ...+..+.  ...+..++|+ ++..+++...|+..+
T Consensus       269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~--~~~l~~~~~~-~~~lv~~~~~dg~~~  343 (695)
T 2bkl_A          269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDS--SASLLSVSIV-GGHLSLEYLKDATSE  343 (695)
T ss_dssp             ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCS--SCEEEEEEEE-TTEEEEEEEETTEEE
T ss_pred             cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCC--CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence            34444455555 6777 655554333467899999987753   33333332  2467888888 666777888899888


Q ss_pred             EEECC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001310          604 IWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1103)
Q Consensus       604 iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~  655 (1103)
                      +|.+. +++....+..+. ...+..++++|+++.++....    .++|++||+.+++
T Consensus       344 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~  399 (695)
T 2bkl_A          344 VRVATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK  399 (695)
T ss_dssp             EEEEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred             EEEEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            88654 455556555432 234667888999987774433    4789999998775

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.56  E-value=2.6e-12  Score=139.33  Aligned_cols=204  Identities=13%  Similarity=0.069  Sum_probs=143.1

Q ss_pred             eeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEE
Q 001310          805 VPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVIS  880 (1103)
Q Consensus       805 v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~  880 (1103)
                      ...++|+|||+++.++.   ++.|.++|+.+++.+.++.....   ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~---~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~  214 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC---YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI  214 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE---EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc---ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence            44678899999888774   47899999999999999864331   233433 667777888899999999876 55432


Q ss_pred             EeccC----CCCEE-EEEEc-cCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecC------CCcccCCCCceEEEEcCCC
Q 001310          881 KLEGH----SKRVT-GLVFS-DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       881 ~l~~h----~~~V~-~l~~s-~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~fs~dg  948 (1103)
                      ....+    ..++. ..+|. ++|+++. .+.+|.|.+.|+.++.......+...      .+...  +....+++++++
T Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p--~g~q~~a~~~~~  291 (386)
T 3sjl_D          215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRP--GGWQQVAYHRAL  291 (386)
T ss_dssp             EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEE--CSSSCEEEETTT
T ss_pred             eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccC--CCcceeeECCCC
Confidence            22111    12222 24664 6775554 56689999999987653222222211      11111  235568889999


Q ss_pred             CEEEEEe-----------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCceeEEe
Q 001310          949 TRFLLVH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCR 1015 (1103)
Q Consensus       949 ~~l~~~~-----------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vWd~~~~~~~~~ 1015 (1103)
                      +.+.+..           .+.|.++|+.+++.+..+..+  ..+.+++|++|++ +|+++. .++.|.++|..+++.+.+
T Consensus       292 ~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~  369 (386)
T 3sjl_D          292 DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS  369 (386)
T ss_dssp             TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred             CeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence            9998852           147999999999999987664  3788999999997 666654 589999999999999988


Q ss_pred             ec
Q 001310         1016 IL 1017 (1103)
Q Consensus      1016 ~~ 1017 (1103)
                      +.
T Consensus       370 i~  371 (386)
T 3sjl_D          370 VN  371 (386)
T ss_dssp             EC
T ss_pred             ec
Confidence            87

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.56  E-value=6.5e-13  Score=146.53  Aligned_cols=261  Identities=10%  Similarity=0.048  Sum_probs=183.2

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS  476 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~  476 (1103)
                      ..|.+++|++++..++..+.++.++.|.   ++..   ..+..+...+.+++|+++|+  +++++..++.|.+||..+++
T Consensus         6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~---~~~~~~~~~~~~~~~~~~g~--l~~~~~~~~~i~~~d~~~~~   77 (333)
T 2dg1_A            6 QDLPTLFYSGKSNSAVPIISESELQTIT---AEPW---LEISKKGLQLEGLNFDRQGQ--LFLLDVFEGNIFKINPETKE   77 (333)
T ss_dssp             CCCCBCCSCGGGGCSSCCCCGGGSCEEE---CEEE---EEEESSCCCEEEEEECTTSC--EEEEETTTCEEEEECTTTCC
T ss_pred             cccceeeecCCccceeEEeecccCcccc---ccee---EEEeccCccccCcEECCCCC--EEEEECCCCEEEEEeCCCCc
Confidence            4577789999998888878888899992   2222   24556777789999999998  77788889999999998888


Q ss_pred             eeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCCCeeEEec--CCCccEEEEEEccCCCEEEEEecC
Q 001310          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSLGARVDYD--APGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~~~~~~~~--~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      .......+...+.+++++  +++.++++...+    +.|.+||.++......+.  .....+..++++|+|+.+++....
T Consensus        78 ~~~~~~~~~~~~~~i~~~--~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~  155 (333)
T 2dg1_A           78 IKRPFVSHKANPAAIKIH--KDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRG  155 (333)
T ss_dssp             EEEEEECSSSSEEEEEEC--TTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCC
T ss_pred             EEEEeeCCCCCcceEEEC--CCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccc
Confidence            765554567789999985  466777777666    689999988776553332  234578999999999887765421


Q ss_pred             --CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC-CeeEEEE------cCCC
Q 001310          551 --KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK-VQLLTTI------DAGG  620 (1103)
Q Consensus       551 --~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~-~~~~~~~------~~~~  620 (1103)
                        .+..+.|+.+|..+++...... ..   ..+..++|+|+++.++.+ +.++.|++||+.+ +..+..+      ....
T Consensus       156 ~~~~~~~~l~~~~~~~~~~~~~~~-~~---~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~  231 (333)
T 2dg1_A          156 YSTNPLGGVYYVSPDFRTVTPIIQ-NI---SVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTG  231 (333)
T ss_dssp             BTTBCCEEEEEECTTSCCEEEEEE-EE---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCS
T ss_pred             cccCCCceEEEEeCCCCEEEEeec-CC---CcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCC
Confidence              1124568888877665543332 22   457889999999866554 5678999999963 3322211      1111


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEecccccc------ceeeeEEe
Q 001310          621 GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD------NLRKLSVN  673 (1103)
Q Consensus       621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~------~i~~~~~~  673 (1103)
                      . ..+..++++++|+++++...++.|.+|+.. ++.+..+..+..      .+.+++++
T Consensus       232 ~-~~~~~i~~d~~G~l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~g~~~~~~~~~~~  288 (333)
T 2dg1_A          232 H-EGPDSCCIDSDDNLYVAMYGQGRVLVFNKR-GYPIGQILIPGRDEGHMLRSTHPQFI  288 (333)
T ss_dssp             S-SEEEEEEEBTTCCEEEEEETTTEEEEECTT-SCEEEEEECTTGGGTCSCBCCEEEEC
T ss_pred             C-CCCCceEECCCCCEEEEEcCCCEEEEECCC-CCEEEEEEcCCCccccccCcceEEEC
Confidence            1 245789999999988888888999999984 555555443322      45555555

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.55  E-value=1.4e-11  Score=136.41  Aligned_cols=281  Identities=12%  Similarity=0.008  Sum_probs=186.2

Q ss_pred             EecCCCceEEEEEc-CCC---cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-
Q 001310          341 DFHPVQHTLLLVGT-NVG---DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-  415 (1103)
Q Consensus       341 ~~spdg~~llasgs-~d~---~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-  415 (1103)
                      ...|++++++++-. ...   +|.++|..+++.+.+                   +.....+  .++|||||++|+++. 
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~-------------------i~~g~~p--~i~~spDg~~lyv~n~   85 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFLP--NPVAAHSGSEFALAST   85 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEE-------------------ecCCCCC--CeEECCCCCEEEEEec
Confidence            44578875444432 233   889999999987653                   1112223  899999999999885 


Q ss_pred             ---------CCCeEEEEEecCCCccccceEec--cc---cccEEEEEEecCCCceEEEEEc--CCCceEEEeCCCCceeE
Q 001310          416 ---------SKHIVQLYAYHGGSDARQQLEID--AH---VGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       416 ---------~d~~i~iwd~~~~~~~~~~~~l~--~h---~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~  479 (1103)
                               .++.|.+||..+.+.+.... +.  .+   ...-..++|+|||+  +|+.+.  .++.|.++| .+++.+.
T Consensus        86 ~~~~~~rg~~~~~v~viD~~t~~~~~~i~-~~~~~~~~~g~~p~~~~~spDG~--~l~v~n~~~~~~v~viD-~t~~~~~  161 (373)
T 2mad_H           86 SFSRIAKGKRTDYVEVFDPVTFLPIADIE-LPDAPRFDVGPYSWMNANTPNNA--DLLFFQFAAGPAVGLVV-QGGSSDD  161 (373)
T ss_pred             cccccccCCCCCeEEEEECCCCcEEEEEE-CCCccccccCCCccceEECCCCC--EEEEEecCCCCeEEEEE-CCCCEEe
Confidence                     36789999998876554321 11  00   12345889999999  455554  257899999 9999887


Q ss_pred             E-eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-----CCCcc-EEEEEEccCCCEEEEEecCCC
Q 001310          480 S-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-----APGLG-CTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       480 ~-~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-----~~~~~-i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      . +.... .   +.+.+... ..+++.+.||.+.++|. +++......     ....+ .....+.+++..++..+.   
T Consensus       162 ~~i~~~~-~---~~~~~~~~-~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---  232 (373)
T 2mad_H          162 QLLSSPT-C---YHIHPGAP-STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVY---  232 (373)
T ss_pred             EEcCCCc-e---EEEEeCCC-ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcC---
Confidence            7 64322 1   33333322 45677788999999999 665542221     11112 233566777666555443   


Q ss_pred             CceeEEEEeCCCCe--eEEEEeccc-------ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeE
Q 001310          553 GESFLVEWNESEGA--IKRTYQGLQ-------LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLL  613 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~--~~~~~~~~~-------~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~  613 (1103)
                       .+.+.+.|+.++.  .+..+....       ........+.++|++++++++..          .+.|.++|..+++.+
T Consensus       233 -~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv  311 (373)
T 2mad_H          233 -SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTS  311 (373)
T ss_pred             -CceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCCEEE
Confidence             3468889987553  222222110       00123445789999998888653          357999999999999


Q ss_pred             EEEcCCCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCCeeEe
Q 001310          614 TTIDAGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDA  659 (1103)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~  659 (1103)
                      ..+....   ...+++|+|||+ +++++. .++.|.++|..+++.+..
T Consensus       312 ~~i~~g~---~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          312 SQISLGH---DVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEECCC---CcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            9987543   368999999999 777776 489999999999988766

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=2e-12  Score=136.81  Aligned_cols=245  Identities=12%  Similarity=0.104  Sum_probs=178.7

Q ss_pred             EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCC-ccEEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 001310          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG-VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  427 (1103)
Q Consensus       349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~~~~spdg~~las~~~d~~i~iwd~~~  427 (1103)
                      ++++++.++.|.+||.++|+.+.+                   +..+. ..+.+++++|+|++|+  +.++.|..||. +
T Consensus         7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~   64 (276)
T 3no2_A            7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D   64 (276)
T ss_dssp             EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred             EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence            789999999999999999998765                   22343 4688999999999998  35777999999 6


Q ss_pred             CCccccceEeccc-cccEEEEEEecCCCceEEEEEcC-CCceEEEeCCCCceeEEeecC------CCceEEEEeeecCCc
Q 001310          428 GSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGD-DKTIKVWDAVTGSRTYSFEGH------GAPVYSLCPHAKENI  499 (1103)
Q Consensus       428 ~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s~~~-d~~i~iwd~~~~~~~~~~~~~------~~~v~~~~~~~~~~~  499 (1103)
                      |+.+.   .+..+ ...+.++.+.+||+  ++++.+. ++.|..+|. +|+.+..+...      ......+++  .+++
T Consensus        65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G  136 (276)
T 3no2_A           65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINK--NKKG  136 (276)
T ss_dssp             SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEE--CTTS
T ss_pred             CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceE--CCCC
Confidence            76554   34433 34688999999999  7777776 778888884 78887776521      122333333  5678


Q ss_pred             cEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccccc--
Q 001310          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ--  577 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--  577 (1103)
                      .++++...++.|..||.+ ++....+.... ...++.+.++|+.++++..    .+.|..+|..+|+.+..+......  
T Consensus       137 ~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~  210 (276)
T 3no2_A          137 NYLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGV  210 (276)
T ss_dssp             CEEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSC
T ss_pred             CEEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCc
Confidence            899999999999999988 88877776643 4456778899999988654    456999999999999988754311  


Q ss_pred             -CCceEEEEEcCCCCEEEEEeCC--------CcEEEEEC-CCCeeEEEEcCCCCCCCCceEE
Q 001310          578 -HNSVSVVHFDTAKDQILAAGDD--------HVIKIWDM-NKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       578 -~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                       -..+..+...++|+.+++....        +..+++.+ .+|+.+..+........+..++
T Consensus       211 ~l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~~  272 (276)
T 3no2_A          211 QLFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTIC  272 (276)
T ss_dssp             CCSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEEE
T ss_pred             cccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeeee
Confidence             1337888889999888876421        23345555 4777777776665555555554

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.55  E-value=1.5e-12  Score=137.81  Aligned_cols=194  Identities=9%  Similarity=-0.021  Sum_probs=154.2

Q ss_pred             CCCEEEEEc-CCeEEEEEcCCceeeEEecCCC-CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccC-CCCE
Q 001310          813 NDAYLFSAS-GGVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGH-SKRV  889 (1103)
Q Consensus       813 d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V  889 (1103)
                      .+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| +|++++  +.++.|+.||. +|+.+..+..+ ...+
T Consensus         4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~   79 (276)
T 3no2_A            4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM   79 (276)
T ss_dssp             CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred             CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence            456777776 7999999999999999998766 5789999999 888888  45788999998 89999998875 3578


Q ss_pred             EEEEEccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecC-CCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCC
Q 001310          890 TGLVFSDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTP-DGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEE  966 (1103)
Q Consensus       890 ~~l~~s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~  966 (1103)
                      .++.+.+||+++++.+. ++.|..+|. +|+......+... .++.   .....+++.++|+++++. .++.|..||.+ 
T Consensus        80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~---~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-  154 (276)
T 3no2_A           80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPH---AQFRQINKNKKGNYLVPLFATSEVREIAPN-  154 (276)
T ss_dssp             EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGG---GSCSCCEECTTSCEEEEETTTTEEEEECTT-
T ss_pred             cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCccc---ccccCceECCCCCEEEEecCCCEEEEECCC-
Confidence            89999999999999887 777888876 4554333222211 1111   135567889999999986 68899999998 


Q ss_pred             ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      |+.+.++..  ...+.++.+.++|..+++++.++.|..+|..+|+.+.++.
T Consensus       155 G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~  203 (276)
T 3no2_A          155 GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN  203 (276)
T ss_dssp             SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred             CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence            999888554  2456678889999999988888899999999999998876

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.54  E-value=6.3e-11  Score=128.14  Aligned_cols=237  Identities=11%  Similarity=-0.011  Sum_probs=164.4

Q ss_pred             ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~  814 (1103)
                      ..+.+++++++|...++...++.+..|+....                        .....++  .....+..++++++|
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~------------------------~~~~~~~--~~~~~~~~i~~~~~g  110 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKKGI------------------------IKEYTLP--NPDSAPYGITEGPNG  110 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTSC------------------------EEEEECS--STTCCEEEEEECTTS
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCCCc------------------------EEEEeCC--CcCCCceeeEECCCC
Confidence            45677888899987777666777877764310                        1111111  134568899999999


Q ss_pred             CEEEEEc-CCeEEEEEcCCceeeEE-ecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE-eccCCCCEEE
Q 001310          815 AYLFSAS-GGVISLYIVMTFKTILT-IMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEGHSKRVTG  891 (1103)
Q Consensus       815 ~~l~~~~-dg~i~iwd~~~~~~~~~-~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~h~~~V~~  891 (1103)
                      +++++.. ++.|..||. +++.... .......+..+++++ +++++++...++.|..||. +++.... +..+...+.+
T Consensus       111 ~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~  187 (299)
T 2z2n_A          111 DIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGS-DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVG  187 (299)
T ss_dssp             CEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEE
T ss_pred             CEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcC-CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCccee
Confidence            9888775 688999998 5544332 233456789999999 7888877777889999998 6665432 3344567889


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEE
Q 001310          892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCL  970 (1103)
Q Consensus       892 l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~  970 (1103)
                      ++++++|+++++...++.|.+||. +++...   ..... ..   ..+.+++++++|++.++. .++.|..||. +++..
T Consensus       188 i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~~-~~---~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~  258 (299)
T 2z2n_A          188 ITKGNDDALWFVEIIGNKIGRITT-SGEITE---FKIPT-PN---ARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE  258 (299)
T ss_dssp             EEECTTSSEEEEETTTTEEEEECT-TCCEEE---EECSS-TT---CCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE
T ss_pred             EEECCCCCEEEEccCCceEEEECC-CCcEEE---EECCC-CC---CCceeEEECCCCCEEEeccCCceEEEECC-CCceE
Confidence            999999998887777889999999 655332   21111 11   258899999999977765 6789999998 46543


Q ss_pred             EEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310          971 KQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       971 ~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      ......+...+.++++ ++|++.++.+ .+.+..++..+++
T Consensus       259 ~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~~~  297 (299)
T 2z2n_A          259 EYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIKDN  297 (299)
T ss_dssp             EEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC---
T ss_pred             EEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCccc
Confidence            3223445678899999 8888777654 5678888877654

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.53  E-value=2e-12  Score=139.80  Aligned_cols=238  Identities=11%  Similarity=0.057  Sum_probs=168.3

Q ss_pred             ccCCCccEEEEEECCCCC-EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          392 VRDPGVSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      +..+.....+++|+|+|+ +++++..++.|..||..++  ..   .+..+...+.+++++++|+  ++++...++.|.+|
T Consensus        23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~   95 (296)
T 3e5z_A           23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ   95 (296)
T ss_dssp             EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred             EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence            334566788999999998 7778888899999999886  33   4556777899999999998  67777777899999


Q ss_pred             eCCCCceeEEeecC----CCceEEEEeeecCCccEEEEEEC-----------------CCeEEEEEcCCCCeeEEecCCC
Q 001310          471 DAVTGSRTYSFEGH----GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKAWLYDSLGARVDYDAPG  529 (1103)
Q Consensus       471 d~~~~~~~~~~~~~----~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~iwd~~~~~~~~~~~~~~  529 (1103)
                      |..+++........    ...+..+++.  ++|.++++.+.                 .+.|..++..  .....+....
T Consensus        96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d--~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~  171 (296)
T 3e5z_A           96 REPGGEWESIADSFEGKKLNSPNDVCLA--PDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR  171 (296)
T ss_dssp             CSTTCCEEEEECEETTEECCCCCCEEEC--TTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred             cCCCCcEEEEeeccCCCCCCCCCCEEEC--CCCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence            99888765443221    1235567774  57777777321                 2345555443  3334444455


Q ss_pred             ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC-CCee---EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001310          530 LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES-EGAI---KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1103)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  605 (1103)
                      .....++|+|+|+.+++...    ++.|++|++. +++.   ...+..   ....+..++++++|+..++.  ++.|.+|
T Consensus       172 ~~~~gi~~s~dg~~lv~~~~----~~~i~~~~~~~~g~~~~~~~~~~~---~~~~p~~i~~d~~G~l~v~~--~~~v~~~  242 (296)
T 3e5z_A          172 VKPNGLAFLPSGNLLVSDTG----DNATHRYCLNARGETEYQGVHFTV---EPGKTDGLRVDAGGLIWASA--GDGVHVL  242 (296)
T ss_dssp             SSEEEEEECTTSCEEEEETT----TTEEEEEEECSSSCEEEEEEEECC---SSSCCCSEEEBTTSCEEEEE--TTEEEEE
T ss_pred             CCCccEEECCCCCEEEEeCC----CCeEEEEEECCCCcCcCCCeEeeC---CCCCCCeEEECCCCCEEEEc--CCeEEEE
Confidence            56789999999999944432    5579999986 5554   333422   23566789999999865555  7899999


Q ss_pred             ECCCCeeEEEEcCCCCCCCCceEEE-ecCCCEEEEEECCCeEEEEEcCCC
Q 001310          606 DMNKVQLLTTIDAGGGLPENPRICF-NKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       606 d~~~~~~~~~~~~~~~~~~v~~v~~-s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      |.. ++.+..+..+..   +.+++| +|+++.|++++.++ +.-++..+.
T Consensus       243 ~~~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~~~  287 (296)
T 3e5z_A          243 TPD-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETNVR  287 (296)
T ss_dssp             CTT-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECSCC
T ss_pred             CCC-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcccc
Confidence            986 777777776533   789999 58999999988864 444555544

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.53  E-value=1.6e-11  Score=133.25  Aligned_cols=302  Identities=12%  Similarity=0.112  Sum_probs=194.5

Q ss_pred             EEEccCCCEEEEEecC-CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----------CCCcEE
Q 001310          535 MAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIK  603 (1103)
Q Consensus       535 ~~~s~dg~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~  603 (1103)
                      ....|+++.+++.... ....+.|.++|..+++.+..+....   .+ . ++++||+++++++.          .++.|.
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~---~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~Vs  112 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---LP-N-PVVADDGSFIAHASTVFSRIARGERTDYVE  112 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---SC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCC---CC-c-EEECCCCCEEEEEcccccccccCCCCCEEE
Confidence            3457899999887642 1124689999999999999887644   34 4 99999999998875          367899


Q ss_pred             EEECCCCeeEEEEcCCCC-----CCCCceEEEecCCCEEEEEEC--CCeEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310          604 IWDMNKVQLLTTIDAGGG-----LPENPRICFNKNGTLLAVIAN--ENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1103)
Q Consensus       604 iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~--dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  676 (1103)
                      +||..+++.+..+....+     ......++|+|||++++++..  ++.|.++|+.+++.+..+.....    ..+.|  
T Consensus       113 viD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~----~~~~P--  186 (386)
T 3sjl_D          113 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC----YHIFP--  186 (386)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEE--
T ss_pred             EEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc----ceeec--
Confidence            999999999988865321     123578999999999998874  68999999999877765532100    00000  


Q ss_pred             ceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-
Q 001310          677 TVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-  755 (1103)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-  755 (1103)
                                          .                                     +.-.-++.++||+.++..... 
T Consensus       187 --------------------~-------------------------------------g~~~~~~~~~DG~~~~v~~~~~  209 (386)
T 3sjl_D          187 --------------------T-------------------------------------APDTFFMHCRDGSLAKVAFGTE  209 (386)
T ss_dssp             --------------------E-------------------------------------ETTEEEEEETTSCEEEEECCSS
T ss_pred             --------------------C-------------------------------------CCceeEEECCCCCEEEEECCCC
Confidence                                0                                     000012344444444333322 


Q ss_pred             ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe-eEEEEe-cCCCEEEEEcCCeEEEEEcCCc
Q 001310          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV-PCFALS-KNDAYLFSASGGVISLYIVMTF  833 (1103)
Q Consensus       756 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~l~~s-~d~~~l~~~~dg~i~iwd~~~~  833 (1103)
                      +.+.. .               .+ ..+++..               .++ ...+|. ++|+++.+..+|.|.+.|..+.
T Consensus       210 g~v~~-~---------------~~-~~~~~~~---------------~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~  257 (386)
T 3sjl_D          210 GTPEI-T---------------HT-EVFHPED---------------EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSG  257 (386)
T ss_dssp             SCCEE-E---------------EC-CCCSCTT---------------SCBCSCCEEETTTTEEEEEBTTSEEEEEECTTS
T ss_pred             CeEEE-e---------------ec-ceecccc---------------ccccccceeEcCCCcEEEEeCCCEEEEEECCCC
Confidence            22210 0               00 1111111               111 122554 7887777667899999999755


Q ss_pred             e--eeEEec---------C-CCCCeeEEEEcCCCCCEEEEEeC----------CCeEEEEEcCCceeEEEeccCCCCEEE
Q 001310          834 K--TILTIM---------P-PSPTATSLAFNPHDNNVIAIGMD----------DSTILIYNARSSEVISKLEGHSKRVTG  891 (1103)
Q Consensus       834 ~--~~~~~~---------~-~~~~i~~l~~s~~d~~~lasg~~----------dg~v~iwd~~~~~~~~~l~~h~~~V~~  891 (1103)
                      .  .+..+.         + .......+++++ +++.+++...          .+.|.+.|+.+++.+..+.-- ..+..
T Consensus       258 ~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~  335 (386)
T 3sjl_D          258 DAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDS  335 (386)
T ss_dssp             SCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECE
T ss_pred             cceeecceeccccccccccccCCCcceeeECC-CCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEEECC-CCcce
Confidence            3  332221         0 123445688899 6777766542          258999999999998887632 36789


Q ss_pred             EEEccCCC-EEEEE-eCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310          892 LVFSDALN-ILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       892 l~~s~dg~-~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  947 (1103)
                      |+|++|++ +|+++ ..++.|.++|..+++...  .+....       ....|.+++|
T Consensus       336 lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~--~i~~~~-------~p~~l~~s~d  384 (386)
T 3sjl_D          336 INVSQDEKPLLYALSTGDKTLYIHDAESGEELR--SVNQLG-------HGPQVITTAD  384 (386)
T ss_dssp             EEECSSSSCEEEEEETTTTEEEEEETTTCCEEE--EECCCC-------SSCCEEEECC
T ss_pred             EEECCCCCeEEEEEcCCCCeEEEEECCCCcEEE--EecCCC-------CCceeEECCc
Confidence            99999997 66554 558999999999988544  333332       2346777776

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=99.53  E-value=9.3e-09  Score=127.17  Aligned_cols=536  Identities=11%  Similarity=0.042  Sum_probs=312.4

Q ss_pred             cCceEEEecCCCc-eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC--CCCEE
Q 001310          335 SSPMSMDFHPVQH-TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP--DGSLL  411 (1103)
Q Consensus       335 ~~V~~v~~spdg~-~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp--dg~~l  411 (1103)
                      ..|.++...++|. .+  .|+.++.+..||..+++...- ..   ..     . ..  ..-....|.++....  +|...
T Consensus        66 n~I~~i~~d~~g~~lW--igt~~~Gl~~~d~~~~~f~~~-~~---~~-----~-~~--~~l~~~~i~~i~~d~~~~g~lw  131 (781)
T 3v9f_A           66 NELNEVYTDPVQPVIW--IATQRAGLNAYNYETQSFSVY-QY---NP-----E-DP--QSLITNDVTHITSSVQAGKGLW  131 (781)
T ss_dssp             SCEEEEEECSSSSEEE--EEESSSCEEEEETTTTEEEEE-CC---CT-----T-CS--SSCSCSCEEEEEECSSTTSEEE
T ss_pred             cccceEEEcCCCCEEE--EEeCCCCcceECCCCCeEEee-cc---cc-----C-CC--CCcccCcceEEEecCccCCCEE
Confidence            3689999999887 43  355655799999887653321 00   00     0 00  000124688998887  66544


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEec------cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee---
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE---  482 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~---  482 (1103)
                       .++.++.|..||..+++..    .+.      -....|.++...++|.   +..+..++-|..||..+++...-..   
T Consensus       132 -i~t~~~gl~~~~~~~~~~~----~~~~~~~~~l~~~~i~~i~~d~~g~---lwigt~~~Gl~~~~~~~~~~~~~~~~~~  203 (781)
T 3v9f_A          132 -VCTYYRGIEYLDIATGKFT----HYNKSTVPALPSEQTWTATEAEDGK---LYIGHVEGGLSILSLNDKSVKHFVHDPQ  203 (781)
T ss_dssp             -EEESSSCEEEEETTTTEEE----EESTTTCTTCSCCCEEEEEEEETTE---EEEEETTTEEEEEETTTTEEEEECC---
T ss_pred             -EEECCCCeeEEECCCCeEE----eeccCcccCCCccceEEEEECCCCC---EEEEecCCCeEEEcCCCCceEeeecCCC
Confidence             4553444888998765321    121      1124588888888876   4445556568899987765432211   


Q ss_pred             ----cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec-------CCCccEEEEEEccCCCEEEEEecCC
Q 001310          483 ----GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------APGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       483 ----~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-------~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                          .....|.++..  +.++.+. .++.+ -+.+||..+........       .....|.++...++|...+..... 
T Consensus       204 ~~~~l~~~~i~~i~~--d~~g~lw-igt~~-Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt~~~-  278 (781)
T 3v9f_A          204 NPNSLPGNDVRCIYK--DTNGNIW-IGTSK-GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDNKLWIATELN-  278 (781)
T ss_dssp             -----CCSSEEEEEE--CTTCCEE-EEETT-EEEEEETTTTEEEC-----------CCCCEEEEEECTTSEEEEEESSS-
T ss_pred             CcccCCCCceeEEEE--cCCCCEE-EEeCC-cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCCCEEEEeCCC-
Confidence                11345777765  3454444 44555 68888876554332111       224568999998888766544212 


Q ss_pred             CCceeEEEEeCCCCeeEEEEe-----------cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc---
Q 001310          552 EGESFLVEWNESEGAIKRTYQ-----------GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID---  617 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---  617 (1103)
                          -|.++|..++.......           ........|.++...++|. |..|+.++-|..++..++.......   
T Consensus       279 ----Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~  353 (781)
T 3v9f_A          279 ----GIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPT  353 (781)
T ss_dssp             ----CEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----
T ss_pred             ----CeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCcc
Confidence                28899988765432221           1112246799999888775 6667777788999887654332211   


Q ss_pred             ----CCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCC
Q 001310          618 ----AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNED  693 (1103)
Q Consensus       618 ----~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~  693 (1103)
                          ..-....|.+++..++|.+ .+|+.++-|..|+..++... .+..                               
T Consensus       354 ~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~-~~~~-------------------------------  400 (781)
T 3v9f_A          354 QMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAI-YNKE-------------------------------  400 (781)
T ss_dssp             CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEE-CC---------------------------------
T ss_pred             ccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEE-EccC-------------------------------
Confidence                0111234777887777764 45665556788876533110 0000                               


Q ss_pred             CCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccc
Q 001310          694 PKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTE  773 (1103)
Q Consensus       694 ~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~  773 (1103)
                        +                                 .......|.++...++|. |.+++.++-+..++......     
T Consensus       401 --~---------------------------------~~~~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~-----  439 (781)
T 3v9f_A          401 --N---------------------------------RELLSNSVLCSLKDSEGN-LWFGTYLGNISYYNTRLKKF-----  439 (781)
T ss_dssp             --------------------------------------CCCSBEEEEEECTTSC-EEEEETTEEEEEECSSSCEE-----
T ss_pred             --C---------------------------------CCCCCcceEEEEECCCCC-EEEEeccCCEEEEcCCCCcE-----
Confidence              0                                 001235677888777777 44455555566665332211     


Q ss_pred             cccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCC-----CCCeeE
Q 001310          774 ATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP-----SPTATS  848 (1103)
Q Consensus       774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~  848 (1103)
                                        ...... ......|.++...++|.+.+... +.+..+|..+++........     ...|.+
T Consensus       440 ------------------~~~~~~-~~~~~~v~~i~~d~~g~lwigt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~  499 (781)
T 3v9f_A          440 ------------------QIIELE-KNELLDVRVFYEDKNKKIWIGTH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRS  499 (781)
T ss_dssp             ------------------EECCST-TTCCCCEEEEEECTTSEEEEEET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEE
T ss_pred             ------------------EEeccC-CCCCCeEEEEEECCCCCEEEEEC-CceEEEeCCCCeEEecccCcccccccceeEE
Confidence                              000000 01456789999999888777665 67899998876554332222     467899


Q ss_pred             EEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc----CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeee
Q 001310          849 LAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG----HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCR  924 (1103)
Q Consensus       849 l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~----h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~  924 (1103)
                      ++..+ ++++.+ |+.++-+..||..+++.. .+..    ....|.++...++|.+.+.. .+|.|..||..+++...  
T Consensus       500 i~~d~-~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~l~~~~i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~~~~~--  573 (781)
T 3v9f_A          500 IAQDS-EGRFWI-GTFGGGVGIYTPDMQLVR-KFNQYEGFCSNTINQIYRSSKGQMWLAT-GEGLVCFPSARNFDYQV--  573 (781)
T ss_dssp             EEECT-TCCEEE-EESSSCEEEECTTCCEEE-EECTTTTCSCSCEEEEEECTTSCEEEEE-TTEEEEESCTTTCCCEE--
T ss_pred             EEEcC-CCCEEE-EEcCCCEEEEeCCCCeEE-EccCCCCCCCCeeEEEEECCCCCEEEEE-CCCceEEECCCCCcEEE--
Confidence            99988 676554 555444778888766533 3321    24578999999998876654 47755889888765332  


Q ss_pred             eeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeC--CC---CcCeEEEEEccCCCEEEEEecC
Q 001310          925 SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFP--IS---SVPISQATFSCDCRMVFTSFVD  999 (1103)
Q Consensus       925 ~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~--~h---~~~v~~l~fs~dg~~l~t~~~d  999 (1103)
                       .....+..  ...|.++...++|++.+++.+| |..++..+++... +..  +-   .-...++...+||++++ |+.+
T Consensus       574 -~~~~~gl~--~~~i~~i~~d~~g~lW~~t~~G-l~~~~~~~~~~~~-~~~~dGl~~~~f~~~~~~~~~~G~l~~-g~~~  647 (781)
T 3v9f_A          574 -FQRKEGLP--NTHIRAISEDKNGNIWASTNTG-ISCYITSKKCFYT-YDHSNNIPQGSFISGCVTKDHNGLIYF-GSIN  647 (781)
T ss_dssp             -ECGGGTCS--CCCCCEEEECSSSCEEEECSSC-EEEEETTTTEEEE-ECGGGTCCSSCEEEEEEEECTTSCEEE-EETT
T ss_pred             -ccccCCCC--CceEEEEEECCCCCEEEEcCCc-eEEEECCCCceEE-ecccCCccccccccCceEECCCCEEEE-ECCC
Confidence             22222221  1357899999999887776444 8888887665432 111  11   11234677778888666 5667


Q ss_pred             CcEEEEeCCC
Q 001310         1000 GTLSIHEASN 1009 (1103)
Q Consensus      1000 g~v~vWd~~~ 1009 (1103)
                      | +..++...
T Consensus       648 G-l~~f~p~~  656 (781)
T 3v9f_A          648 G-LCFFNPDI  656 (781)
T ss_dssp             E-EEEECSCC
T ss_pred             c-eEEEChhh
Confidence            7 55667654

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.52  E-value=3.1e-13  Score=164.99  Aligned_cols=249  Identities=9%  Similarity=-0.067  Sum_probs=163.4

Q ss_pred             cCCcCceEEEecCCCceEEEE----EcCCCcEEEEECCCCCee-eeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          332 EGSSSPMSMDFHPVQHTLLLV----GTNVGDTGLWDVNSGQKL-FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llas----gs~d~~v~iwd~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      +|...+..++|||||++++++    |+.+.+|++||+.+|+.+ .. .                 +.+.  ....++|||
T Consensus       118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~-~-----------------~~~~--~~~~~~wsp  177 (695)
T 2bkl_A          118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD-V-----------------IEGG--KYATPKWTP  177 (695)
T ss_dssp             SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC-C-----------------BSCC--TTCCCEECT
T ss_pred             CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc-c-----------------cCcc--cccceEEec
Confidence            566679999999999964443    333468999999999865 21 0                 1111  125789999


Q ss_pred             CCCEEEEEeCCCe-------------EEEEEecCCCccc-cceEeccccccEEEEEEecCCCceEEEEEcCCC----ceE
Q 001310          407 DGSLLGVAYSKHI-------------VQLYAYHGGSDAR-QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK----TIK  468 (1103)
Q Consensus       407 dg~~las~~~d~~-------------i~iwd~~~~~~~~-~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~----~i~  468 (1103)
                      ||+.|+.++.+..             |++|++.++.... .......|...+..+.|+|||+.  |+..+.++    .|.
T Consensus       178 Dg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~  255 (695)
T 2bkl_A          178 DSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVY  255 (695)
T ss_dssp             TSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEE
T ss_pred             CCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEE
Confidence            9999999988765             9999998875321 11122345567899999999995  44444444    677


Q ss_pred             EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEE---CCCeEEEEEcCCCCe---eEEecCC-CccEEEEEEccCC
Q 001310          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAP-GLGCTRMAYSANG  541 (1103)
Q Consensus       469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~-~~~i~~~~~s~dg  541 (1103)
                      +||..+++ ...+..+...+....+ +  ++.+++...   .++.|.+||++++..   ...+... ...+..++++ ++
T Consensus       256 ~~~~~~~~-~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~  330 (695)
T 2bkl_A          256 WKRPGEKD-FRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GG  330 (695)
T ss_dssp             EECTTCSS-CEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TT
T ss_pred             EEcCCCCc-eEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CC
Confidence            77765554 4455555555555554 2  444444444   257899999987653   3333332 4467888888 66


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCee
Q 001310          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL  612 (1103)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~  612 (1103)
                      ..+++...  ++...|++++.. ++..+.+..+.  ...+..++++|+++.++...    ..++|++||+.+++.
T Consensus       331 ~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~  400 (695)
T 2bkl_A          331 HLSLEYLK--DATSEVRVATLK-GKPVRTVQLPG--VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS  400 (695)
T ss_dssp             EEEEEEEE--TTEEEEEEEETT-CCEEEECCCSS--SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred             EEEEEEEE--CCEEEEEEEeCC-CCeeEEecCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence            66666554  334456666654 55555555442  25677788899988777433    347899999998774

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.50  E-value=2.3e-12  Score=137.22  Aligned_cols=240  Identities=8%  Similarity=-0.044  Sum_probs=166.4

Q ss_pred             CceEEEecCCCceEEE-EEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          336 SPMSMDFHPVQHTLLL-VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       336 ~V~~v~~spdg~~lla-sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ...+++++|+|+ +++ +.+.++.|.+||..++.....                   ...+...+.+++++++|+++++.
T Consensus        25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~~i~~~~~g~l~v~~   84 (270)
T 1rwi_B           25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYVTD   84 (270)
T ss_dssp             CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EEC-------------------CCCSCCSCCCEEECTTCCEEEEE
T ss_pred             CccceEECCCCC-EEEEccCCCCcEEEecCCCcccceE-------------------eeCCcCCcceeEECCCCCEEEEc
Confidence            778999999998 666 556789999999766543211                   11233567889999999966665


Q ss_pred             eCCCeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  493 (1103)
                      . ++.|.+||..++...    .+. .....+.+++++++|+  ++++...++.|.+|+..+.............+..+++
T Consensus        85 ~-~~~i~~~d~~~~~~~----~~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~  157 (270)
T 1rwi_B           85 F-NNRVVTLAAGSNNQT----VLPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV  157 (270)
T ss_dssp             T-TTEEEEECTTCSCCE----ECCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred             C-CCEEEEEeCCCceEe----eeecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence            5 889999998765322    122 2335689999999998  6777777889999986655443322233345677787


Q ss_pred             eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec
Q 001310          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1103)
                      .+  ++.++++...++.|.+||................+..++++++|..+++...    ++.|.+|+............
T Consensus       158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~----~~~v~~~~~~~~~~~~~~~~  231 (270)
T 1rwi_B          158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTSTVLPFT  231 (270)
T ss_dssp             CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TSCEEEECTTCSCCEECCCC
T ss_pred             eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECC----CCcEEEEcCCCCcceeeccC
Confidence            54  6677777777889999998776544333333356889999999976666533    45599999876544332212


Q ss_pred             ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310          574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       574 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  611 (1103)
                      .   ...+.+++++++|+.+++...++.|+++++...+
T Consensus       232 ~---~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~  266 (270)
T 1rwi_B          232 G---LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHH  266 (270)
T ss_dssp             S---CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGG
T ss_pred             C---CCCceeEEECCCCCEEEEECCCCEEEEEcCCCcc
Confidence            1   2568999999999988888889999999987654

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.49  E-value=7.3e-12  Score=133.29  Aligned_cols=237  Identities=11%  Similarity=0.038  Sum_probs=164.8

Q ss_pred             CeeEEEEecCCCEEE-EEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE
Q 001310          804 AVPCFALSKNDAYLF-SAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK  881 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~-~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~  881 (1103)
                      ...+++++++|++++ +.. ++.|.+|+..+.........+...+.++++++ +++++++.. ++.|.+||..+... ..
T Consensus        25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~-~~  101 (270)
T 1rwi_B           25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQ-TV  101 (270)
T ss_dssp             CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCC-EE
T ss_pred             CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceE-ee
Confidence            678999999999777 433 68899999765543322223335778999999 777666555 88999999876543 33


Q ss_pred             ec-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeE
Q 001310          882 LE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL  959 (1103)
Q Consensus       882 l~-~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v  959 (1103)
                      +. .....+.+++++++|+++++...++.|.+|+..+.....     ......   ..+.+++++++|+++++. .++.|
T Consensus       102 ~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~~---~~p~~i~~~~~g~l~v~~~~~~~i  173 (270)
T 1rwi_B          102 LPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTGL---NDPDGVAVDNSGNVYVTDTDNNRV  173 (270)
T ss_dssp             CCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCSC---CSCCCEEECTTCCEEEEEGGGTEE
T ss_pred             eecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----eccccC---CCceeEEEeCCCCEEEEECCCCEE
Confidence            33 233578999999999988887788899999765533211     111111   246789999999977665 56899


Q ss_pred             EEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccC
Q 001310          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSC 1039 (1103)
Q Consensus       960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1039 (1103)
                      .+||...+..... ...+...+.+++++++|..+++...++.|.+||..+..... ..      .            .+.
T Consensus       174 ~~~~~~~~~~~~~-~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~------~------------~~~  233 (270)
T 1rwi_B          174 VKLEAESNNQVVL-PFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP------F------------TGL  233 (270)
T ss_dssp             EEECTTTCCEEEC-CCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC------C------------CSC
T ss_pred             EEEecCCCceEee-cccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec------c------------CCC
Confidence            9999987765443 22333678899999999777777678899999987654322 11      0            011


Q ss_pred             CceeeEEEEECCCCCcEEEEEecCCcEEEEccCCC
Q 001310         1040 LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1074 (1103)
Q Consensus      1040 ~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1074 (1103)
                        -.+..++++|+ ++++++...++.|+++++.+.
T Consensus       234 --~~p~~i~~~~~-g~l~v~~~~~~~v~~~~~~~~  265 (270)
T 1rwi_B          234 --NTPLAVAVDSD-RTVYVADRGNDRVVKLTSLEH  265 (270)
T ss_dssp             --SCEEEEEECTT-CCEEEEEGGGTEEEEECCCGG
T ss_pred             --CCceeEEECCC-CCEEEEECCCCEEEEEcCCCc
Confidence              12357788888 788899899999999998543

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.49  E-value=1.7e-12  Score=159.57  Aligned_cols=247  Identities=9%  Similarity=0.044  Sum_probs=163.5

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCC-----CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSK-----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--  466 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d-----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--  466 (1103)
                      +|...+..++|||||++||.++.+     ..|++||+.+++.+.    ...+...+..++|+|| +  .|+.++.|+.  
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~----~~~~~~~~~~~~wspD-~--~l~~~~~~~~~~  232 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLA----DELKWVKFSGLAWLGN-D--ALLYSRFAEPKE  232 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEE----EEEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCC----ccCCCceeccEEEECC-C--EEEEEEecCccc
Confidence            355578899999999999988654     469999999987543    1112222367899999 8  4555555443  


Q ss_pred             ------------eEEEeCCCCce--eEEeec--CCCceEEEEeeecCCccEEEEEECCC-----eEEEEEcCCC--CeeE
Q 001310          467 ------------IKVWDAVTGSR--TYSFEG--HGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSL--GARV  523 (1103)
Q Consensus       467 ------------i~iwd~~~~~~--~~~~~~--~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~--~~~~  523 (1103)
                                  |++|++.++..  ...+..  +...+..+.+  ++||++|+..+.++     .|.+||+.++  ....
T Consensus       233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~--SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~  310 (741)
T 1yr2_A          233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASV--SSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT  310 (741)
T ss_dssp             ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred             ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEE--CCCCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence                        89999987763  223332  3335677777  56888888777554     7999999876  3133


Q ss_pred             EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC--eeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001310          524 DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG--AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1103)
Q Consensus       524 ~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  601 (1103)
                      .+..+....... ++|+|+.|+..+........|++||+.++  +....+..+.   ..+..+.++ ++..+++...|+.
T Consensus       311 ~l~~~~~~~~~~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~---~~l~~~~~~-~~~lv~~~~~dg~  385 (741)
T 1yr2_A          311 ALIPDLKAQWDF-VDGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESK---DNLESVGIA-GNRLFASYIHDAK  385 (741)
T ss_dssp             EEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCS---SEEEEEEEE-BTEEEEEEEETTE
T ss_pred             EecCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCC---CeEEEEEEE-CCEEEEEEEECCE
Confidence            343333334444 35999999888765444678999999875  3333443333   457777777 4556777888888


Q ss_pred             EEEEECC-CCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001310          602 IKIWDMN-KVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1103)
Q Consensus       602 i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~  655 (1103)
                      .++|.+. ++.....+..+. ...+..++++|+++.++....    .++|.+||+.+++
T Consensus       386 ~~l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~  443 (741)
T 1yr2_A          386 SQVLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK  443 (741)
T ss_dssp             EEEEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred             EEEEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence            7777554 455666665432 234678889999886664322    4789999998775

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.48  E-value=1.4e-11  Score=136.49  Aligned_cols=206  Identities=14%  Similarity=0.079  Sum_probs=143.6

Q ss_pred             eEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE-
Q 001310          806 PCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-  881 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-  881 (1103)
                      ..++|+|||+++.++.   ++.|.+.|+.+++.+.++.....    ....|++.+.+++.+.||++.+.++.+++.... 
T Consensus       180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~  255 (426)
T 3c75_H          180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN  255 (426)
T ss_dssp             GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred             ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence            4567888888888775   36799999999999988874321    233442446667777888888888866654422 


Q ss_pred             ---eccCCCCE-EEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcc-c---CCCCceEEEEcCCCCEEEE
Q 001310          882 ---LEGHSKRV-TGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVM-T---LAPSETHIQFHKDQTRFLL  953 (1103)
Q Consensus       882 ---l~~h~~~V-~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~-~---~~~~v~~l~fs~dg~~l~~  953 (1103)
                         +.....++ ..+.|+++++.++..+..+.|.+.|+..+............... .   .......++|+||++.+.+
T Consensus       256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV  335 (426)
T 3c75_H          256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL  335 (426)
T ss_dssp             CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred             eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence               21112221 23578999988888888899999999765533222222110000 0   0012334799999998887


Q ss_pred             Ee-----------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCC-EEEEEe-cCCcEEEEeCCCceeEEeec
Q 001310          954 VH-----------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCR-MVFTSF-VDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       954 ~~-----------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~-~l~t~~-~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ..           ++.|.++|+.+++.+..+..+  ....++.|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus       336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~  410 (426)
T 3c75_H          336 LVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD  410 (426)
T ss_dssp             EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             EecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence            52           247999999999999886543  3588999999999 888887 58999999999999998873

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.48  E-value=2.1e-10  Score=124.08  Aligned_cols=280  Identities=10%  Similarity=0.027  Sum_probs=191.4

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .....+.+++++++|+ +.++...++.|.+||.. ++.... .                 +..+...+.++++.++|++.
T Consensus        17 ~~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~~-~-----------------~~~~~~~~~~i~~~~~g~l~   76 (300)
T 2qc5_A           17 IPDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKEF-E-----------------VPTPDAKVMCLIVSSLGDIW   76 (300)
T ss_dssp             STTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEEE-E-----------------CSSTTCCEEEEEECTTSCEE
T ss_pred             CCCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEEE-E-----------------CCCCCCcceeEEECCCCCEE
Confidence            3445889999999998 66776678999999987 553321 0                 22344678999999999988


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE-EeecCCCceEE
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY-SFEGHGAPVYS  490 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~-~~~~~~~~v~~  490 (1103)
                      ++...++.|..||.. ++. . ...+......+.++++.++|+  ++++...++.|..+|.. ++... .+......+..
T Consensus        77 v~~~~~~~v~~~d~~-g~~-~-~~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~  150 (300)
T 2qc5_A           77 FTENGANKIGKLSKK-GGF-T-EYPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAF  150 (300)
T ss_dssp             EEETTTTEEEEECTT-SCE-E-EEECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEE
T ss_pred             EEecCCCeEEEECCC-CCe-E-EecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCC-CCEEEccCCCCCCCcee
Confidence            877768889999987 442 2 112233446789999999998  67777668899999977 65542 23334556788


Q ss_pred             EEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1103)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1103)
                      +++.  +++.+.++...++.|..++. +++... ........+..++++++|+..++...    .+.|.+||. +++...
T Consensus       151 i~~d--~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~----~~~i~~~~~-~g~~~~  222 (300)
T 2qc5_A          151 ITLG--SDNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEIM----GNKIGRITT-TGEISE  222 (300)
T ss_dssp             EEEC--TTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETT----TTEEEEECT-TCCEEE
T ss_pred             EEEC--CCCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEccC----CCEEEEEcC-CCcEEE
Confidence            8875  46666666666788999988 433332 22234456889999999987666532    446999998 555443


Q ss_pred             EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1103)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw  649 (1103)
                      .....  ....+.+++++++++..++...++.|..||. +++.. .+........+.+++++++|++.++.. . .|..+
T Consensus       223 ~~~~~--~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~  296 (300)
T 2qc5_A          223 YDIPT--PNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKL  296 (300)
T ss_dssp             EECSS--TTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEE
T ss_pred             EECCC--CCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEe
Confidence            22111  1356889999999986666656789999998 45433 333332234578999999998666544 4 66666


Q ss_pred             Ec
Q 001310          650 ET  651 (1103)
Q Consensus       650 ~~  651 (1103)
                      +.
T Consensus       297 ~p  298 (300)
T 2qc5_A          297 NL  298 (300)
T ss_dssp             EE
T ss_pred             CC
Confidence            54

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.43  E-value=1.2e-11  Score=137.01  Aligned_cols=281  Identities=11%  Similarity=0.095  Sum_probs=191.1

Q ss_pred             CCCceEEEEEcCC----CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe----
Q 001310          344 PVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY----  415 (1103)
Q Consensus       344 pdg~~llasgs~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~----  415 (1103)
                      |+++++.++...+    +.|.+.|..+++.+.+...                  + ..+  .+++||||++|+++.    
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~v------------------G-~~P--gia~SpDgk~lyVan~~~~  140 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDG------------------G-FLP--HPVAAEDGSFFAQASTVFE  140 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------C-SSC--EEEECTTSSCEEEEEEEEE
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEEC------------------C-CCC--ceEECCCCCEEEEEecccc
Confidence            5666556665544    7999999999998875332                  1 233  799999999998876    


Q ss_pred             ------CCCeEEEEEecCCCccccceEec--c---ccccEEEEEEecCCCceEEEEEc--CCCceEEEeCCCCceeEEee
Q 001310          416 ------SKHIVQLYAYHGGSDARQQLEID--A---HVGNVNDLAFSAPCKQISVITCG--DDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       416 ------~d~~i~iwd~~~~~~~~~~~~l~--~---h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iwd~~~~~~~~~~~  482 (1103)
                            .++.|.++|..+++.+..+. +.  .   .......++|+|||++  ++.+.  .++.|.+.|+.+++.+.++.
T Consensus       141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~  217 (426)
T 3c75_H          141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD  217 (426)
T ss_dssp             ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence                  36789999999987655332 21  0   0123457899999994  55544  36789999999999998886


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE----ecCCCcc-EEEEEEccCCCEEEEEecCCCCceeE
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDAPGLG-CTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~~~~~-i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                      ....    ....+... ..+++.+.||.+.+.+..+++....    +.....+ ...+.+++++..++....    .+.+
T Consensus       218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V  288 (426)
T 3c75_H          218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI  288 (426)
T ss_dssp             CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred             cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence            4221    22223322 5667778889888888854443321    1111112 123568999988877754    3569


Q ss_pred             EEEeCCCCeeE--EEEecc--c-----ccCCceEEEEEcCCCCEEEEEeC----------CCcEEEEECCCCeeEEEEcC
Q 001310          558 VEWNESEGAIK--RTYQGL--Q-----LQHNSVSVVHFDTAKDQILAAGD----------DHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       558 ~iwd~~~~~~~--~~~~~~--~-----~~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~  618 (1103)
                      ++.|...+...  ..+...  .     ........++++|+++++++...          ++.|.++|..+.+.+..+..
T Consensus       289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v  368 (426)
T 3c75_H          289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL  368 (426)
T ss_dssp             EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred             EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence            99998655422  111100  0     00011223689999998887642          35799999999999999875


Q ss_pred             CCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCCeeEec
Q 001310          619 GGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAA  660 (1103)
Q Consensus       619 ~~~~~~v~~v~~s~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1103)
                      ..   ....++|+|||+ ++++.. .++.|.++|..+.+.+..+
T Consensus       369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            43   268999999999 888888 5899999999999888775

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.43  E-value=7.9e-12  Score=153.64  Aligned_cols=248  Identities=12%  Similarity=0.015  Sum_probs=159.0

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +|...+..++|||||++++.+.+.+|    +|++||+.+|+.+.. .+                   +...+..++||||
T Consensus       160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~-~~-------------------~~~~~~~~~wspD  219 (741)
T 1yr2_A          160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD-EL-------------------KWVKFSGLAWLGN  219 (741)
T ss_dssp             ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE-EE-------------------EEEESCCCEESTT
T ss_pred             CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc-cC-------------------CCceeccEEEECC
Confidence            34457889999999996544443333    599999999987542 10                   1122357899999


Q ss_pred             CCEEEEEeCCCe--------------EEEEEecCCCccccceEec--cccccEEEEEEecCCCceEEEEEcC-----CCc
Q 001310          408 GSLLGVAYSKHI--------------VQLYAYHGGSDARQQLEID--AHVGNVNDLAFSAPCKQISVITCGD-----DKT  466 (1103)
Q Consensus       408 g~~las~~~d~~--------------i~iwd~~~~~~~~~~~~l~--~h~~~v~~~~~s~d~~~~~l~s~~~-----d~~  466 (1103)
                       +.|+.++.++.              |++|++.++..... ..+.  .+...+..+.|||||+.  |+..+.     ...
T Consensus       220 -~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~  295 (741)
T 1yr2_A          220 -DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQ-PVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNT  295 (741)
T ss_dssp             -SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCE-EEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCE
T ss_pred             -CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCE-EEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcce
Confidence             99998876543              88999877652211 1222  33345889999999994  444443     348


Q ss_pred             eEEEeCCCC--ceeEEeecCCCceEEEEeeecCCccEEEEEECC----CeEEEEEcCCC--CeeEEecCCCccEEEEEEc
Q 001310          467 IKVWDAVTG--SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD----GKIKAWLYDSL--GARVDYDAPGLGCTRMAYS  538 (1103)
Q Consensus       467 i~iwd~~~~--~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d----g~i~iwd~~~~--~~~~~~~~~~~~i~~~~~s  538 (1103)
                      |++||+.++  ++...+..+...+....+   +++..|+..+.+    +.|.+||+++.  .....+..+...+..++++
T Consensus       296 l~~~d~~~~~~~~~~~l~~~~~~~~~~~~---~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~  372 (741)
T 1yr2_A          296 VHVARVTNGKIGPVTALIPDLKAQWDFVD---GVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA  372 (741)
T ss_dssp             EEEEEEETTEECCCEEEECSSSSCEEEEE---EETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE
T ss_pred             EEEEECCCCCCcccEEecCCCCceEEEEe---ccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE
Confidence            999999887  425566555555544432   355677766653    45999998874  2333344444456677776


Q ss_pred             cCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCCCee
Q 001310          539 ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNKVQL  612 (1103)
Q Consensus       539 ~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~  612 (1103)
                       ++..+++...  ++...|++++.. +...+.+..+.  ...+..+.++|+++.++...    ..++|++||+.+++.
T Consensus       373 -~~~lv~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~  444 (741)
T 1yr2_A          373 -GNRLFASYIH--DAKSQVLAFDLD-GKPAGAVSLPG--IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT  444 (741)
T ss_dssp             -BTEEEEEEEE--TTEEEEEEEETT-SCEEEECBCSS--SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             -CCEEEEEEEE--CCEEEEEEEeCC-CCceeeccCCC--CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence             4555555544  335556777764 55555555432  36788899999988666432    457899999998873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.38  E-value=1.3e-10  Score=126.74  Aligned_cols=246  Identities=8%  Similarity=0.064  Sum_probs=165.5

Q ss_pred             ccEEEEEEecCCcEEEE-------eecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeE
Q 001310          735 NKISRLTYNNGGQAIFA-------LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  807 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l~~-------~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  807 (1103)
                      ....+++|+++|..+++       ...++.|.+|+......            ..+...          ...++...+.+
T Consensus        18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~------------~~~~~~----------~~~~~~~~~~~   75 (314)
T 1pjx_A           18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK------------TVICKP----------EVNGYGGIPAG   75 (314)
T ss_dssp             TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE------------EEEECC----------EETTEECCEEE
T ss_pred             CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcE------------EEEEec----------ccCCCCCCCce
Confidence            34578899999987777       56678888887543321            000000          00013356889


Q ss_pred             EEEecC-CCEEEEEcCCeEEEEEcCCceeeEE-ecC----CCCCeeEEEEcCCCCCEEEEEeCC---------------C
Q 001310          808 FALSKN-DAYLFSASGGVISLYIVMTFKTILT-IMP----PSPTATSLAFNPHDNNVIAIGMDD---------------S  866 (1103)
Q Consensus       808 l~~s~d-~~~l~~~~dg~i~iwd~~~~~~~~~-~~~----~~~~i~~l~~s~~d~~~lasg~~d---------------g  866 (1103)
                      ++++++ |+++++...+.|.+||.. ++.... ...    ....+.++++++ +++++++...+               +
T Consensus        76 i~~~~~~g~l~v~~~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~-~g~l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           76 CQCDRDANQLFVADMRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDY-EGNLWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             EEECSSSSEEEEEETTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECT-TSCEEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EEEecCCCcEEEEECCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECC-CCCEEEEecCcccccccccccccCCCC
Confidence            999999 887777666689999998 665433 221    123588999999 78877776655               5


Q ss_pred             eEEEEEcCCceeEEEeccCCCCEEEEEEc----cCCCEEEEE-eCCCeEEEEEcC-CCceeeeeeeecCCCcccCCCCce
Q 001310          867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSS-GGDAQIFVWDVD-GWGIQTCRSLQTPDGVMTLAPSET  940 (1103)
Q Consensus       867 ~v~iwd~~~~~~~~~l~~h~~~V~~l~~s----~dg~~l~s~-s~dg~I~iwd~~-~~~~~~~~~~~~~~~~~~~~~~v~  940 (1103)
                      .|..|+.. ++... +..+......++|+    |+++.|..+ ..++.|.+|+++ +++......+....++..  ..+.
T Consensus       154 ~l~~~~~~-g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~--~~p~  229 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHE--GGAD  229 (314)
T ss_dssp             EEEEECTT-SCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSS--CEEE
T ss_pred             eEEEECCC-CCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCC--CCCC
Confidence            77777765 55433 33344557889999    999765544 567899999987 454333223333322210  1467


Q ss_pred             EEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEE-ecCCcEEEEeCCC
Q 001310          941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASN 1009 (1103)
Q Consensus       941 ~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~dg~v~vWd~~~ 1009 (1103)
                      .++++++|+++++. .++.|.+||..+++.+..+ ..+...+.+++|++||+.|+++ ..++.|..|++..
T Consensus       230 ~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~-~~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          230 GMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRI-RCPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEE-ECSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             ceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEE-eCCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            89999999988875 6789999999877766553 3445789999999999955544 4567899999874

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.38  E-value=1.4e-09  Score=117.46  Aligned_cols=243  Identities=12%  Similarity=0.027  Sum_probs=168.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +......+.++++.++|+..++...++.|.+||.. ++...  ..+..+...+.++++.++|.  ++++...++.|..||
T Consensus        15 ~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~v~~~d   89 (300)
T 2qc5_A           15 LSIPDSGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKE--FEVPTPDAKVMCLIVSSLGD--IWFTENGANKIGKLS   89 (300)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred             cCCCCCCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEE--EECCCCCCcceeEEECCCCC--EEEEecCCCeEEEEC
Confidence            33455688999999999988877778899999987 44221  12333446789999999998  667666678899999


Q ss_pred             CCCCceeE-EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCee-EEecCCCccEEEEEEccCCCEEEEEec
Q 001310          472 AVTGSRTY-SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGAR-VDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       472 ~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      .. ++... .+......+.++++.  +++.++++...++.|..++.+ ++.. .........+..+++.++|+..++...
T Consensus        90 ~~-g~~~~~~~~~~~~~~~~i~~~--~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~  165 (300)
T 2qc5_A           90 KK-GGFTEYPLPQPDSGPYGITEG--LNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQ  165 (300)
T ss_dssp             TT-SCEEEEECSSTTCCEEEEEEC--STTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETT
T ss_pred             CC-CCeEEecCCCCCCCCccceEC--CCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecC
Confidence            77 65432 222244667888875  466777777668899999887 4433 223334557889999999996655432


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                          .+.|..+|. +++... +.... ....+..++++++++..++....+.|.+|+. +++.... ........+.+++
T Consensus       166 ----~~~i~~~~~-~g~~~~-~~~~~-~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~-~~~~~~~~~~~i~  236 (300)
T 2qc5_A          166 ----NNSIGRITN-TGKLEE-YPLPT-NAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEY-DIPTPNARPHAIT  236 (300)
T ss_dssp             ----TTEEEEECT-TCCEEE-EECSS-TTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEE-ECSSTTCCEEEEE
T ss_pred             ----CCeEEEECC-CCcEEE-eeCCC-CCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEE-ECCCCCCCceEEE
Confidence                445999998 565543 32211 1256889999999876666666778999998 5554432 2222234568899


Q ss_pred             EecCCCEEEEEECCCeEEEEEcC
Q 001310          630 FNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      ++++|++.++...++.|..|+..
T Consensus       237 ~d~~g~l~v~~~~~~~i~~~~~~  259 (300)
T 2qc5_A          237 AGKNSEIWFTEWGANQIGRITND  259 (300)
T ss_dssp             ECSTTCEEEEETTTTEEEEECTT
T ss_pred             ECCCCCEEEeccCCCeEEEECCC
Confidence            99999877666667899999873

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.37  E-value=1.6e-10  Score=126.07  Aligned_cols=250  Identities=13%  Similarity=0.098  Sum_probs=164.8

Q ss_pred             ccCCcCceEEEecCCCceEEEE-------EcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLV-------GTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llas-------gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ...-....+++|+++|+ ++++       +..++.|.+||..+++.... ..              ....++...+.+++
T Consensus        14 ~~~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~-~~--------------~~~~~~~~~~~~i~   77 (314)
T 1pjx_A           14 TEDIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI-CK--------------PEVNGYGGIPAGCQ   77 (314)
T ss_dssp             ECCCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE-EC--------------CEETTEECCEEEEE
T ss_pred             hccCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE-Ee--------------cccCCCCCCCceEE
Confidence            34444788999999997 6666       56678999999888875421 00              00123456789999


Q ss_pred             ECCC-CCEEEEEeCCCeEEEEEecCCCcccc-ceEecc-ccccEEEEEEecCCCceEEEEEcCC---------------C
Q 001310          404 WSPD-GSLLGVAYSKHIVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCGDD---------------K  465 (1103)
Q Consensus       404 ~spd-g~~las~~~d~~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d---------------~  465 (1103)
                      ++++ |+++++.. .+.|.+||.. ++.... .....+ ....+.+++++++|+  ++++...+               +
T Consensus        78 ~~~~~g~l~v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~  153 (314)
T 1pjx_A           78 CDRDANQLFVADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFG  153 (314)
T ss_dssp             ECSSSSEEEEEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCE
T ss_pred             EecCCCcEEEEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCC
Confidence            9999 76555544 4469999988 553211 100011 224588999999998  56665544               5


Q ss_pred             ceEEEeCCCCceeEEeecCCCceEEEEee--ecCCccEEE-EEECCCeEEEEEcC-CCCe-----eEEecCCC-ccEEEE
Q 001310          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPH--AKENIHFIF-SISVDGKIKAWLYD-SLGA-----RVDYDAPG-LGCTRM  535 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~--~~~~~~~l~-s~~~dg~i~iwd~~-~~~~-----~~~~~~~~-~~i~~~  535 (1103)
                      .|..||.. ++..... .+......++++  .++++..++ +...++.|.+|+.+ .+..     ...+..+. .....+
T Consensus       154 ~l~~~~~~-g~~~~~~-~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i  231 (314)
T 1pjx_A          154 SIYCFTTD-GQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGM  231 (314)
T ss_dssp             EEEEECTT-SCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEE
T ss_pred             eEEEECCC-CCEEEec-cCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCce
Confidence            67777765 5543332 233445777775  114665554 44568899999986 3321     11223232 567889


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCC
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNK  609 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~  609 (1103)
                      +++++|+..++...    ++.|.+||..+++.+..+..+.   ..+.+++|+++++.|+++ ..++.|..|++..
T Consensus       232 ~~d~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~---~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          232 DFDEDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             EEBTTCCEEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred             EECCCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCC---CCceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99999988877643    4469999998787777666554   678999999999966554 4568899999864

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.35  E-value=4.4e-10  Score=126.36  Aligned_cols=242  Identities=12%  Similarity=0.011  Sum_probs=163.3

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ...+.|+|+|+|+ ++++...++.|++||..++.....                   ... ..... ++|+|+++.|+++
T Consensus       131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~  188 (409)
T 3hrp_A          131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI  188 (409)
T ss_dssp             CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred             CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence            4688999999998 788888889999999988765432                   111 22233 9999999999988


Q ss_pred             eCCC--eEEEEEecCCCccccceEecc-ccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE----eecCCCc
Q 001310          415 YSKH--IVQLYAYHGGSDARQQLEIDA-HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS----FEGHGAP  487 (1103)
Q Consensus       415 ~~d~--~i~iwd~~~~~~~~~~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~----~~~~~~~  487 (1103)
                      ..++  .|.+|+..++........+.. +...+.+++++|++..  |+.+..++.|+.||..++.....    ..++...
T Consensus       189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~  266 (409)
T 3hrp_A          189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQEVTLIKQLELSGSLGT  266 (409)
T ss_dssp             BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCCEEEEEECCCCSCCCC
T ss_pred             ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCCEEEEecccccCCCCC
Confidence            8765  788898877643221111112 4456789999995553  44466788999999887764332    2222222


Q ss_pred             e-E-EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC---------------CccEEEEEEccCCCEEEEEecC
Q 001310          488 V-Y-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP---------------GLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       488 v-~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---------------~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                      - . .+++++. ++.++++...++.|+.|+.+..  ...+...               -.....++++++|+++++-.  
T Consensus       267 ~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~--  341 (409)
T 3hrp_A          267 NPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG--  341 (409)
T ss_dssp             SSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET--
T ss_pred             CccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC--
Confidence            2 2 8888653 3567777778899999987654  2222221               13478899999999665543  


Q ss_pred             CCCceeEEEEeCCCCeeEEEEeccc------------ccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQ------------LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  607 (1103)
                       .++..|+.|+..++.. ..+.++.            ..-.....+++++++..+++-..++.|+.+++
T Consensus       342 -~~~~~I~~~~~~~G~v-~~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          342 -FKGYCLRKLDILDGYV-STVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             -TTTCEEEEEETTTTEE-EEEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred             -CCCCEEEEEECCCCEE-EEEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence             0266799999888864 3444331            01245889999999877777778888887765

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=99.34  E-value=4.6e-06  Score=98.31  Aligned_cols=521  Identities=9%  Similarity=-0.006  Sum_probs=291.3

Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceE
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~  489 (1103)
                      +|+.+ ..+.|+..++.+..... ...+ ..-..+..++|.+.+.. ++++-..++.|..+++........+........
T Consensus         8 ~Ll~s-~~~~I~~i~l~~~~~~~-~~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~   83 (628)
T 4a0p_A            8 FLLFS-RRADIRRISLETNNNNV-AIPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE   83 (628)
T ss_dssp             EEEEE-ETTEEEEEESSCTTCEE-ECCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred             EEEEE-eCCcEEEEECCCCCcce-EEEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence            45554 55678999998654211 1112 22346789999997764 455666778999999776544444433334566


Q ss_pred             EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1103)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1103)
                      .+++.+. ++.+.++-...+.|.+.+++.................+++.|....|+..-..  ....|...++.......
T Consensus        84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g--~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWG--GKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEE
T ss_pred             eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCC--CCCEEEEEeCCCCceEE
Confidence            7887543 34566666677889999987665444443444567899999976666665321  14568888876544333


Q ss_pred             EEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEE
Q 001310          570 TYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI  648 (1103)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~i  648 (1103)
                      ....    ......+++++++..|+.+. ..+.|...|+..... ..+...  ......+++.. +.++++-...+.|..
T Consensus       161 l~~~----~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~~ly~tD~~~~~I~~  232 (628)
T 4a0p_A          161 LVPN----VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-DYIYWTDWSRRSIER  232 (628)
T ss_dssp             EECS----CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-TEEEEEETTTTEEEE
T ss_pred             EECC----CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-CEEEEecCCCCEEEE
Confidence            3322    25788999999877777765 567899999876444 233221  22345777765 444444445788888


Q ss_pred             EEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeec
Q 001310          649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLL  728 (1103)
Q Consensus       649 w~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~  728 (1103)
                      .|..+++....+.........+.+.......         ..+....                       ....|..+.+
T Consensus       233 ~dk~tg~~~~~l~~~~~~p~~i~v~~~~~q~---------~~n~C~~-----------------------~ng~C~~~C~  280 (628)
T 4a0p_A          233 ANKTSGQNRTIIQGHLDYVMDILVFHSSRQS---------GWNECAS-----------------------SNGHCSHLCL  280 (628)
T ss_dssp             EETTTCCSCEEEECSCCSCCEEEEECGGGSC---------CCCTTTT-----------------------TGGGCSSEEE
T ss_pred             EECCCCCceEEEecCCCCcceeeeeeecccc---------cceEecc-----------------------CCCCcchhhh
Confidence            8877776555544333333333332111000         0000000                       0000111110


Q ss_pred             cCc-c------------ccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeecc
Q 001310          729 PSK-V------------KANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND  795 (1103)
Q Consensus       729 ~~~-~------------~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  795 (1103)
                      ... +            ......|.   +...+++.+. ...|+-..+....                    .. .....
T Consensus       281 ~~~~~~~~C~C~~g~~l~~d~~~C~---~~~~~Ll~s~-~~~i~~i~l~~~~--------------------~~-~~~l~  335 (628)
T 4a0p_A          281 AVPVGGFVCGCPAHYSLNADNRTCS---APTTFLLFSQ-KSAINRMVIDEQQ--------------------SP-DIILP  335 (628)
T ss_dssp             EETTTEEEEECSTTCEECTTSSCEE---CCSSEEEEEE-TTEEEEECCCTTC--------------------CC-CEECC
T ss_pred             cCCCCCeeEEcCCCcEecccCCcCc---cccceeeeec-cceEEEEeccccc--------------------Cc-eEEEE
Confidence            000 0            00001111   1122233322 2223222211100                    00 00111


Q ss_pred             CCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecC------CCCCeeEEEEcCCCCCEEEEEeCCCe
Q 001310          796 TTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP------PSPTATSLAFNPHDNNVIAIGMDDST  867 (1103)
Q Consensus       796 ~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~------~~~~i~~l~~s~~d~~~lasg~~dg~  867 (1103)
                      +   ..-..+..++|.+.+..|..+.  .+.|..++.........+..      ....+..+|+....+++..+-+..+.
T Consensus       336 ~---~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~  412 (628)
T 4a0p_A          336 I---HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNV  412 (628)
T ss_dssp             C---TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTE
T ss_pred             e---hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCE
Confidence            1   1234577899999877777765  47788888764332222322      23467899999834555566667889


Q ss_pred             EEEEEcCCceeEEEe-ccCCCCEEEEEEcc-CCCEEEEEeCCC--eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310          868 ILIYNARSSEVISKL-EGHSKRVTGLVFSD-ALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       868 v~iwd~~~~~~~~~l-~~h~~~V~~l~~s~-dg~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1103)
                      |.+.++. |+....+ ........+|++.| .|.++.+-....  .|...+++......  .+.   ...   .....++
T Consensus       413 I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~--l~~---~~l---~~P~gla  483 (628)
T 4a0p_A          413 INVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREV--LFF---SGL---SKPIALA  483 (628)
T ss_dssp             EEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEE--EEC---SSC---SCEEEEE
T ss_pred             EEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEE--EEe---ccC---CCccEEE
Confidence            9999986 5544444 33456789999999 555555543333  56666666533211  111   111   2578999


Q ss_pred             EcCCCCEEEEE--eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEee
Q 001310          944 FHKDQTRFLLV--HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1103)
Q Consensus       944 fs~dg~~l~~~--~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~ 1016 (1103)
                      ++++++.|..+  ..+.|...+++ |.....+.........++++.. +..+++=.....|...|-.+|+....+
T Consensus       484 ~D~~~~~LYw~D~~~~~I~~~~~d-G~~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i  556 (628)
T 4a0p_A          484 LDSRLGKLFWADSDLRRIESSDLS-GANRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKV  556 (628)
T ss_dssp             EETTTTEEEEEETTTTEEEEEETT-SCSCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEE
T ss_pred             EeCCCCEEEEEeCCCCEEEEEeCC-CCceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEE
Confidence            99998888776  45789999986 4444444433344567777654 455555556677888888877654433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.33  E-value=6.5e-10  Score=119.69  Aligned_cols=228  Identities=10%  Similarity=0.044  Sum_probs=151.0

Q ss_pred             cEEEEEEecCCcEEEE-eecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310          736 KISRLTYNNGGQAIFA-LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1103)
Q Consensus       736 ~i~~~~~s~~g~~l~~-~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~  814 (1103)
                      -..+..|++++..++. ...++.|..|+....                      . .....     ....+.+++++++|
T Consensus        14 ~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~~~~i~~~~dG   65 (297)
T 3g4e_A           14 CGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK----------------------Q-VQRVT-----MDAPVSSVALRQSG   65 (297)
T ss_dssp             BEEEEEEETTTTEEEEEETTTTEEEEEETTTC----------------------C-EEEEE-----CSSCEEEEEEBTTS
T ss_pred             cccCCeEECCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEe-----CCCceEEEEECCCC
Confidence            3457889986555544 445678887775432                      1 11111     34578899999999


Q ss_pred             CEEEEEcCCeEEEEEcCCceeeEEecC----CCCCeeEEEEcCCCCCEEEEEeCC---------CeEEEEEcCC-ceeEE
Q 001310          815 AYLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMDD---------STILIYNARS-SEVIS  880 (1103)
Q Consensus       815 ~~l~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~d---------g~v~iwd~~~-~~~~~  880 (1103)
                      +++++ .++.|.+||..+++.......    ....+..++++| +|+++++...+         ..-.+|.+.. ++. .
T Consensus        66 ~l~v~-~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~-dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~-~  142 (297)
T 3g4e_A           66 GYVAT-IGTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDP-AGRYFAGTMAEETAPAVLERHQGALYSLFPDHHV-K  142 (297)
T ss_dssp             SEEEE-ETTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECT-TSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCE-E
T ss_pred             CEEEE-ECCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECC-CCCEEEecCCcccccccccCCCcEEEEEECCCCE-E
Confidence            96655 467899999988765433221    123578899999 78876654321         2334555443 333 3


Q ss_pred             EeccCCCCEEEEEEccCCCEEE-EEeCCCeEEEEEc--CCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eC
Q 001310          881 KLEGHSKRVTGLVFSDALNILV-SSGGDAQIFVWDV--DGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  956 (1103)
Q Consensus       881 ~l~~h~~~V~~l~~s~dg~~l~-s~s~dg~I~iwd~--~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d  956 (1103)
                      .+..+......++|+||++.|. +.+.++.|.+|++  .++.....+.+.......   ..+..++++++|++.++. ..
T Consensus       143 ~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~---~~p~g~~~d~~G~lwva~~~~  219 (297)
T 3g4e_A          143 KYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEE---QIPDGMCIDAEGKLWVACYNG  219 (297)
T ss_dssp             EEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGG---CEEEEEEEBTTSCEEEEEETT
T ss_pred             EEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCC---CCCCeeEECCCCCEEEEEcCC
Confidence            3333445578899999998664 5556789999998  456544333333332211   246789999999887775 56


Q ss_pred             CeEEEEECCCceEEEEeeCCCCcCeEEEEEc-cCCCEEEEEec
Q 001310          957 THLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFV  998 (1103)
Q Consensus       957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~  998 (1103)
                      +.|..||.++|+.+..+. .+...+++++|. ||++.|++++.
T Consensus       220 ~~v~~~d~~tG~~~~~i~-~p~~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          220 GRVIRLDPVTGKRLQTVK-LPVDKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             TEEEEECTTTCCEEEEEE-CSSSBEEEEEEESGGGCEEEEEEB
T ss_pred             CEEEEEcCCCceEEEEEE-CCCCCceEEEEeCCCCCEEEEEcC
Confidence            789999999999887744 345689999999 89887766654

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.31  E-value=1.8e-10  Score=139.94  Aligned_cols=253  Identities=11%  Similarity=0.043  Sum_probs=165.4

Q ss_pred             cCCcCceEEEecCCCceEEEEEc----CCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGT----NVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs----~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +|...+..++|||||++++.+.+    ...+|++||+++|+.+.. .+                   +......++|+ |
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~-~~-------------------~~~k~~~~~Ws-D  184 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET-PL-------------------KDVKFSGISWL-G  184 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE-EE-------------------EEEESCCCEEE-T
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc-cc-------------------CCceeccEEEe-C
Confidence            46667889999999996554433    335799999999986542 11                   11113567999 9


Q ss_pred             CCEEEEEeCCC-------------eEEEEEecCCCcccc-ceEecc-ccccEEEEEEecCCCceEEEEEc--CCCceEEE
Q 001310          408 GSLLGVAYSKH-------------IVQLYAYHGGSDARQ-QLEIDA-HVGNVNDLAFSAPCKQISVITCG--DDKTIKVW  470 (1103)
Q Consensus       408 g~~las~~~d~-------------~i~iwd~~~~~~~~~-~~~l~~-h~~~v~~~~~s~d~~~~~l~s~~--~d~~i~iw  470 (1103)
                      |+.|+.++.+.             .|++|++.++..-.. ...... |...+..+.|+|||+.+++.+..  .+..|++|
T Consensus       185 g~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~  264 (693)
T 3iuj_A          185 NEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVK  264 (693)
T ss_dssp             TTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEE
T ss_pred             CCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEE
Confidence            99999998774             399999987643211 111223 44567889999999963333222  23589999


Q ss_pred             eCCCCc-eeEEeecCCCceEEEEeeecCCccEEEEEECC---CeEEEEEcCCCCe--eEEecCCCccEEEEEEccCCCEE
Q 001310          471 DAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVD---GKIKAWLYDSLGA--RVDYDAPGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       471 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~~~~~i~~~~~s~dg~~l  544 (1103)
                      |+.++. ....+..+....... +.+. ++.+++....+   +.|..+++.+...  ...+..+...+.  .|+++++.|
T Consensus       265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l  340 (693)
T 3iuj_A          265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL  340 (693)
T ss_dssp             ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred             ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence            998774 456666666665554 3332 33444454443   5799999987654  234444444444  899999998


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC----CcEEEEECCCCeeE
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD----HVIKIWDMNKVQLL  613 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~  613 (1103)
                      +..... ++...|++||+..+. .+.+....  ...+..+.++++++.++....+    ++++.||+.+++..
T Consensus       341 v~~~~~-~g~~~l~~~d~~g~~-~~~l~~p~--~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~  409 (693)
T 3iuj_A          341 FAEYMV-DATARVEQFDYEGKR-VREVALPG--LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS  409 (693)
T ss_dssp             EEEEEE-TTEEEEEEECTTSCE-EEEECCSS--SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred             EEEEEE-CCeeEEEEEECCCCe-eEEeecCC--CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence            877643 335679999988554 34443322  2467777888888877765544    88999999887643

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.30  E-value=1.3e-09  Score=122.55  Aligned_cols=253  Identities=10%  Similarity=-0.012  Sum_probs=166.0

Q ss_pred             CCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCcee
Q 001310          802 QEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEV  878 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~  878 (1103)
                      -.....++++++++++++.. ++.|++||..++......... .... ++|++ +++.|++++.++  .|.+|+..++..
T Consensus       130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~-~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~  206 (409)
T 3hrp_A          130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGF-KGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWA  206 (409)
T ss_dssp             CCCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETC-CBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTC
T ss_pred             cCCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccC-CCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCce
Confidence            34677899999999777765 588999999987776555443 2233 99999 788888888766  899999876654


Q ss_pred             EEEe----ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCce-EEEEcCCCCEEEE
Q 001310          879 ISKL----EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET-HIQFHKDQTRFLL  953 (1103)
Q Consensus       879 ~~~l----~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~-~l~fs~dg~~l~~  953 (1103)
                      ...+    ..+...+.+++++|++..|..+..++.|+.||..++......... ..+...  .... .++|+|++..|.+
T Consensus       207 ~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~-~~g~~~--~~P~~~ia~~p~~g~lyv  283 (409)
T 3hrp_A          207 PTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLE-LSGSLG--TNPGPYLIYYFVDSNFYM  283 (409)
T ss_dssp             EEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECC-CCSCCC--CSSCCEEEEETTTTEEEE
T ss_pred             eEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEeccc-ccCCCC--CCccccEEEeCCCCEEEE
Confidence            4444    224566788999995555555777899999999886632211111 111111  0113 9999996555554


Q ss_pred             E--eCCeEEEEECCCceEEEEeeCCC---------------CcCeEEEEEccCCCEEEEEe-cCCcEEEEeCCCceeEEe
Q 001310          954 V--HETHLAIYEAEELTCLKQWFPIS---------------SVPISQATFSCDCRMVFTSF-VDGTLSIHEASNLEVQCR 1015 (1103)
Q Consensus       954 ~--~d~~v~iwd~~~~~~~~~~~~~h---------------~~~v~~l~fs~dg~~l~t~~-~dg~v~vWd~~~~~~~~~ 1015 (1103)
                      +  .++.|+.|+.+..  +..+. ++               -.....++|+++|+++++-+ .+++|+.|++.++.....
T Consensus       284 ~d~~~~~I~~~~~~g~--~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~  360 (409)
T 3hrp_A          284 SDQNLSSVYKITPDGE--CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTV  360 (409)
T ss_dssp             EETTTTEEEEECTTCC--EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred             EeCCCCEEEEEecCCC--EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEE
Confidence            3  5678999997743  22211 22               13478899999999777777 789999999888875433


Q ss_pred             eccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      ............. .      ....--.+..++++|+ +.++++-..++.|+.+++
T Consensus       361 ~g~~~~~g~~~g~-~------~~~~~~~P~giavd~~-g~lyVad~~n~~Ir~i~~  408 (409)
T 3hrp_A          361 AGQVDVASQIDGT-P------LEATFNYPYDICYDGE-GGYWIAEAWGKAIRKYAV  408 (409)
T ss_dssp             EECTTCBSCCCBS-T------TTCCBSSEEEEEECSS-SEEEEEESTTCEEEEEEE
T ss_pred             eCCCCCCCcCCCC-h------hceEeCCceEEEEcCC-CCEEEEECCCCeEEEEEe
Confidence            2210000000000 0      0001124678899998 888888888888988765

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.29  E-value=1.2e-09  Score=117.74  Aligned_cols=232  Identities=12%  Similarity=0.097  Sum_probs=155.4

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .+..-..+..|+|++..++++...++.|..||..+++....                     .....+.+++++++|+++
T Consensus        10 ~~~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~~---------------------~~~~~~~~i~~~~dG~l~   68 (297)
T 3g4e_A           10 ENCRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQRV---------------------TMDAPVSSVALRQSGGYV   68 (297)
T ss_dssp             CCCSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEE---------------------ECSSCEEEEEEBTTSSEE
T ss_pred             cCCccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEEE---------------------eCCCceEEEEECCCCCEE
Confidence            33345568899997666888888899999999988764311                     134679999999999965


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEecc--ccccEEEEEEecCCCceEEEEEcC---------CCceEEEeCCCCceeEE
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD---------DKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~~~l~s~~~---------d~~i~iwd~~~~~~~~~  480 (1103)
                      ++.  ++.|.+||..+++... ......  ....+..++++|+|+  ++++...         .....+|.+.....+..
T Consensus        69 v~~--~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~  143 (297)
T 3g4e_A           69 ATI--GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK  143 (297)
T ss_dssp             EEE--TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE
T ss_pred             EEE--CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE
Confidence            553  5679999998775321 111111  224588999999998  4444322         12335555443222333


Q ss_pred             eecCCCceEEEEeeecCCccEE-EEEECCCeEEEEEcC--CCCee-----EEecCCCccEEEEEEccCCCEEEEEecCCC
Q 001310          481 FEGHGAPVYSLCPHAKENIHFI-FSISVDGKIKAWLYD--SLGAR-----VDYDAPGLGCTRMAYSANGRRLFSCGTSKE  552 (1103)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l-~s~~~dg~i~iwd~~--~~~~~-----~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~  552 (1103)
                      +..+......++|++  ++..+ ++.+.++.|.+|+++  ++...     ..+.........++++++|++.++...   
T Consensus       144 ~~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---  218 (297)
T 3g4e_A          144 YFDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---  218 (297)
T ss_dssp             EEEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET---
T ss_pred             EeeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC---
Confidence            333444567788854  55555 556668899999974  33321     122223346788999999987776643   


Q ss_pred             CceeEEEEeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeC
Q 001310          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGD  598 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~  598 (1103)
                       .+.|..||..+++.+..+..+.   ..+.+++|. |+++.|++++.
T Consensus       219 -~~~v~~~d~~tG~~~~~i~~p~---~~~t~~~f~g~d~~~L~vt~~  261 (297)
T 3g4e_A          219 -GGRVIRLDPVTGKRLQTVKLPV---DKTTSCCFGGKNYSEMYVTCA  261 (297)
T ss_dssp             -TTEEEEECTTTCCEEEEEECSS---SBEEEEEEESGGGCEEEEEEB
T ss_pred             -CCEEEEEcCCCceEEEEEECCC---CCceEEEEeCCCCCEEEEEcC
Confidence             4469999999999988887765   679999998 88888777654

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.28  E-value=1.1e-10  Score=127.28  Aligned_cols=174  Identities=9%  Similarity=0.065  Sum_probs=136.0

Q ss_pred             CCeeEEEEecCCCEEEEEcCCeEEEEEcCCce-----------eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-----------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1103)
                      ..+..+++++...++++++...+.+|++.+..           ..... .+.. |++++|   |+++|+++ .++.|++|
T Consensus        38 ~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v~  111 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYSL  111 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEEE
T ss_pred             ccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEEE
Confidence            36889999999999999998888889986544           11222 2445 999999   57789988 88999999


Q ss_pred             EcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEE
Q 001310          872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRF  951 (1103)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l  951 (1103)
                      |+.+.........|...+.++.+.+..  +++++.||.|.+||++++....   +      .   ..|++++|||+| ..
T Consensus       112 dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~------~---~~Vs~v~WSpkG-~~  176 (388)
T 1xip_A          112 DLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---L------A---QNVTSFDVTNSQ-LA  176 (388)
T ss_dssp             ESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---E------E---ESEEEEEECSSE-EE
T ss_pred             EchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---c------c---CCceEEEEcCCc-eE
Confidence            998876666667788889988877653  8889999999999999866432   1      1   169999999999 44


Q ss_pred             EEEeCCeEEEEECCCceE--EEEee-----C---CCCcCeEEEEEccCCCEEEEEe
Q 001310          952 LLVHETHLAIYEAEELTC--LKQWF-----P---ISSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       952 ~~~~d~~v~iwd~~~~~~--~~~~~-----~---~h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      +...||++++|+.+.++.  ...+.     .   +|...|.++.|.+++.++++=+
T Consensus       177 vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          177 VLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            445899999999988775  44431     1   4788999999999999988643

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.28  E-value=1.2e-10  Score=127.09  Aligned_cols=196  Identities=11%  Similarity=0.000  Sum_probs=126.2

Q ss_pred             eEEEEecCCCEEEEEc---CCeEEE--EEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-----
Q 001310          806 PCFALSKNDAYLFSAS---GGVISL--YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-----  875 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~---dg~i~i--wd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-----  875 (1103)
                      ..++++|||++++++.   .+.+.+  +|..+   +.++.....    ..+.|++.+.+++.+.||.+.+.++.+     
T Consensus       127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~----~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~  199 (368)
T 1mda_H          127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC----FHIHPGAAATHYLGSCPASLAASDLAAAPAAA  199 (368)
T ss_dssp             TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC----CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred             ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc----eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence            3567788888777775   245777  88876   344432111    123343455666777888888888886     


Q ss_pred             ceeEEE----eccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecC------CCcccCCCCceEEEEc
Q 001310          876 SEVISK----LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTP------DGVMTLAPSETHIQFH  945 (1103)
Q Consensus       876 ~~~~~~----l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~------~~~~~~~~~v~~l~fs  945 (1103)
                      ++....    +.-...+.   + ++++..++..+. +.|.+.|+.++.......+...      .+..+  .....++|+
T Consensus       200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p--~g~~~v~~s  272 (368)
T 1mda_H          200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRS--AGFQMVAKL  272 (368)
T ss_dssp             EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEE--CSSSCEEEE
T ss_pred             CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEecccccccccccc--CcceeeEEc
Confidence            443311    11122333   3 666776666666 8999999976432211111111      11110  122337899


Q ss_pred             CCCCEEEEE-e-C--------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCE-EEEEe-cCCcEEEEeCCCceeE
Q 001310          946 KDQTRFLLV-H-E--------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRM-VFTSF-VDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus       946 ~dg~~l~~~-~-d--------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~-l~t~~-~dg~v~vWd~~~~~~~ 1013 (1103)
                      |||+.+.++ . .        +.+.++|+.+++.+..+..+  ....+++|++||++ +++.. .+++|.|+|+.+++.+
T Consensus       273 ~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv  350 (368)
T 1mda_H          273 KNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ  350 (368)
T ss_dssp             TTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred             CCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence            999998875 3 2        36779999999998876543  36889999999985 55555 4899999999999999


Q ss_pred             Eeec
Q 001310         1014 CRIL 1017 (1103)
Q Consensus      1014 ~~~~ 1017 (1103)
                      .++.
T Consensus       351 ~~I~  354 (368)
T 1mda_H          351 SSVE  354 (368)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            8887

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.27  E-value=7.4e-11  Score=130.06  Aligned_cols=273  Identities=11%  Similarity=0.023  Sum_probs=174.9

Q ss_pred             cCceEEEecCCCceEEEEEcC--CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTN--VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG  412 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~--d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la  412 (1103)
                      ..+..++++|+|+ ++++...  ++.++||.+.+++..   .++-|.          ....+|-..+..++|+++|++++
T Consensus        17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v   82 (343)
T 2qe8_A           17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM   82 (343)
T ss_dssp             SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred             CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence            5899999999998 6666532  343666666555422   121111          01234667899999999998776


Q ss_pred             EEeC-----CCeEEEEEecCCCccccceEec----cccccEEEEEEecCCCceEEEEEc---CCCceEEEeCCCCceeEE
Q 001310          413 VAYS-----KHIVQLYAYHGGSDARQQLEID----AHVGNVNDLAFSAPCKQISVITCG---DDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       413 s~~~-----d~~i~iwd~~~~~~~~~~~~l~----~h~~~v~~~~~s~d~~~~~l~s~~---~d~~i~iwd~~~~~~~~~  480 (1103)
                      +-..     ++.|.+||+.+++.++.. .+.    .+...+..+++++++.. ++++..   .++.|.+||+.+++..+.
T Consensus        83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~  160 (343)
T 2qe8_A           83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV  160 (343)
T ss_dssp             EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred             EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence            6544     578999999988644322 221    12345689999987553 455555   678999999999988777


Q ss_pred             eecCCCceE-EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          481 FEGHGAPVY-SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       481 ~~~~~~~v~-~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      +.+|..... ...+.  .++..+.+.+.+|.++.|.              ..+..++++|||+.|+.+...   ...++.
T Consensus       161 ~~~~~~~~~~~~~~~--~~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~~---~~~l~~  221 (343)
T 2qe8_A          161 LQGYPGIAPEDIDLV--IDGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPMH---STSMYR  221 (343)
T ss_dssp             CTTCTTTSCCSCCCE--ETTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEESS---CSEEEE
T ss_pred             ecCCCccccccccee--ECCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeCC---CCeEEE
Confidence            765532211 02222  2556667777788876663              235789999999999887642   224655


Q ss_pred             EeCC---CCe-----eEE--EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          560 WNES---EGA-----IKR--TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       560 wd~~---~~~-----~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                      ++..   .+.     ...  ...++.   .....++++++|+.+++...++.|.+||..+++........ ......+++
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~g~~---g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va  297 (343)
T 2qe8_A          222 IKSADLSNLQLTDAELGSKIERYSEK---PICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFN  297 (343)
T ss_dssp             EEHHHHTCTTCCHHHHHTTCEEEEEC---CSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEE
T ss_pred             EEHHHhcCCCCChhhhhcceEecccC---CCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeE
Confidence            5532   111     000  111222   34567889999998888888999999998666654333322 233467899


Q ss_pred             EecCCCEEEEEECCCeE
Q 001310          630 FNKNGTLLAVIANENRI  646 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i  646 (1103)
                      |.++++++++....+.+
T Consensus       298 ~~~~g~l~v~~~~~~~~  314 (343)
T 2qe8_A          298 FGSDGYLYFDCNQLHHS  314 (343)
T ss_dssp             ECTTSCEEEEECCGGGS
T ss_pred             ECCCCcEEEEeCccccc
Confidence            99998887777655443

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.27  E-value=6.1e-10  Score=120.49  Aligned_cols=238  Identities=12%  Similarity=0.042  Sum_probs=159.8

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ...+..|..+.......+|+|+|+.+++++..++.|..|+. +++.. .                   +..+...+..++
T Consensus        34 ~~~~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~-------------------~~~~~~~~~gl~   92 (305)
T 3dr2_A           34 DARLLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-V-------------------LLDATAFTNGNA   92 (305)
T ss_dssp             TCCCEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-E-------------------EEESCSCEEEEE
T ss_pred             CCceEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-E-------------------EeCCCCccceee
Confidence            34455566566688899999999978889888999999997 45422 1                   222556789999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccc-cccEEEEEEecCCCceEEEE----EcC-------------CC
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVIT----CGD-------------DK  465 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s----~~~-------------d~  465 (1103)
                      ++++|+++++...++.|.+|+.. ++.........+. ...+.+++++++|+  +.++    |..             .+
T Consensus        93 ~d~dG~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~  169 (305)
T 3dr2_A           93 VDAQQRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHH  169 (305)
T ss_dssp             ECTTSCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCE
T ss_pred             ECCCCCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCC
Confidence            99999977766666789999986 4421111111111 13467899999998  6665    332             24


Q ss_pred             ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC------CeEEEEEcCCCCe---eEEecCCCccEEEEE
Q 001310          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD------GKIKAWLYDSLGA---RVDYDAPGLGCTRMA  536 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~~~---~~~~~~~~~~i~~~~  536 (1103)
                      .|..||..+++.....  .......++|+  +++..|+.+...      +.|.+|++.....   .............++
T Consensus       170 ~v~~~d~~~g~~~~~~--~~~~p~gl~~s--pdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~  245 (305)
T 3dr2_A          170 SVYRLPPDGSPLQRMA--DLDHPNGLAFS--PDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFC  245 (305)
T ss_dssp             EEEEECSSSCCCEEEE--EESSEEEEEEC--TTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEE
T ss_pred             eEEEEcCCCCcEEEEe--cCCCCcceEEc--CCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEE
Confidence            6788887777654433  33456778885  466777766655      7899999875431   111122233445789


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC
Q 001310          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH  600 (1103)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg  600 (1103)
                      ++++|++.++. .    + .|.+|+. +++.+..+....    .+..++|+++++.|+.++.++
T Consensus       246 ~d~~G~lwv~~-~----~-gv~~~~~-~g~~~~~~~~~~----~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          246 VDRGGWLWSSS-G----T-GVCVFDS-DGQLLGHIPTPG----TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             ECTTSCEEECC-S----S-EEEEECT-TSCEEEEEECSS----CCCEEEECTTSCEEEEEETTE
T ss_pred             ECCCCCEEEec-C----C-cEEEECC-CCCEEEEEECCC----ceeEEEEeCCCCEEEEEcCCe
Confidence            99999955443 2    2 2999998 577777776543    478899999998888888754

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.25  E-value=3.4e-09  Score=127.16  Aligned_cols=193  Identities=14%  Similarity=0.136  Sum_probs=135.9

Q ss_pred             CCeEEEEEcCCceeeEEecCCCC--------------------------------CeeEEEEcCCCCCEEEEEeCCC---
Q 001310          822 GGVISLYIVMTFKTILTIMPPSP--------------------------------TATSLAFNPHDNNVIAIGMDDS---  866 (1103)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~~~--------------------------------~i~~l~~s~~d~~~lasg~~dg---  866 (1103)
                      ++.|..+|..+|+.+.++.....                                ....++++| ++.+++.+..++   
T Consensus       189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w  267 (677)
T 1kb0_A          189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW  267 (677)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred             CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence            46788888888887776643211                                113578898 677888887664   


Q ss_pred             ----------------eEEEEEcCCceeEEEecc--CC-------CCEEEEEEccCC---CEEEEEeCCCeEEEEEcCCC
Q 001310          867 ----------------TILIYNARSSEVISKLEG--HS-------KRVTGLVFSDAL---NILVSSGGDAQIFVWDVDGW  918 (1103)
Q Consensus       867 ----------------~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg---~~l~s~s~dg~I~iwd~~~~  918 (1103)
                                      .|..+|..+|+.+..+..  |.       ....-+....+|   +.++.++.+|.|+++|..+|
T Consensus       268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG  347 (677)
T 1kb0_A          268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG  347 (677)
T ss_dssp             CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred             cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence                            599999999999877654  31       122223444577   68999999999999999999


Q ss_pred             ceeeeeeeecC--------CCc------------c--cC-----CCCceEEEEcCCCCEEEEE-eC--------------
Q 001310          919 GIQTCRSLQTP--------DGV------------M--TL-----APSETHIQFHKDQTRFLLV-HE--------------  956 (1103)
Q Consensus       919 ~~~~~~~~~~~--------~~~------------~--~~-----~~~v~~l~fs~dg~~l~~~-~d--------------  956 (1103)
                      +......+...        .+.            .  ..     ...-..++|+|++.++.+. .+              
T Consensus       348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g  427 (677)
T 1kb0_A          348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN  427 (677)
T ss_dssp             CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred             CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence            87543221100        000            0  00     0001367899999888773 21              


Q ss_pred             -----------------------------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          957 -----------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       957 -----------------------------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                                                   +.|..||+.+|+.+.+..  +..++.+..++.++..+++++.||.+++||+
T Consensus       428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~  505 (677)
T 1kb0_A          428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHA  505 (677)
T ss_dssp             CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEEC
Confidence                                         679999999999987744  3445566677888889999999999999999


Q ss_pred             CCceeEEeec
Q 001310         1008 SNLEVQCRIL 1017 (1103)
Q Consensus      1008 ~~~~~~~~~~ 1017 (1103)
                      .+|+.+.++.
T Consensus       506 ~tG~~lw~~~  515 (677)
T 1kb0_A          506 ATGEKLWEAP  515 (677)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCceeeeee
Confidence            9999998887

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.25  E-value=4e-10  Score=136.97  Aligned_cols=245  Identities=9%  Similarity=0.057  Sum_probs=159.5

Q ss_pred             CCCccEEEEEECCCCCEEEEEe-----CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCC---
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAY-----SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDK---  465 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~-----~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~---  465 (1103)
                      +|...+..++|||||++||.+.     ...+|++||+.+|+.+..  .+.+  .....++|+ ||+  .|+.++.+.   
T Consensus       126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~~  198 (693)
T 3iuj_A          126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPDG  198 (693)
T ss_dssp             TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC-
T ss_pred             CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCccc
Confidence            4666888999999999999653     225799999999874431  1111  113578999 999  566666553   


Q ss_pred             ----------ceEEEeCCCCce----eEEeec-CCCceEEEEeeecCCccEEEEEEC----CCeEEEEEcCCCC-eeEEe
Q 001310          466 ----------TIKVWDAVTGSR----TYSFEG-HGAPVYSLCPHAKENIHFIFSISV----DGKIKAWLYDSLG-ARVDY  525 (1103)
Q Consensus       466 ----------~i~iwd~~~~~~----~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~-~~~~~  525 (1103)
                                .|++|++.++..    +..... |...+.++.+  ++|+++|+....    ++.|.++|++++. ....+
T Consensus       199 ~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l  276 (693)
T 3iuj_A          199 SELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATV--TEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTV  276 (693)
T ss_dssp             ------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEE--CTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEE
T ss_pred             ccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEE--cCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEE
Confidence                      399999987753    222233 4445666776  557777754432    2479999988764 33444


Q ss_pred             cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCC---
Q 001310          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH---  600 (1103)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---  600 (1103)
                      ..+....... ++++|..|+..+........|..+|+.++..  .+.+..+.   ..+.  .|++++++|+....++   
T Consensus       277 ~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~---~~~~--~~s~~g~~lv~~~~~~g~~  350 (693)
T 3iuj_A          277 QGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPER---QQVL--TVHSGSGYLFAEYMVDATA  350 (693)
T ss_dssp             ECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCC---SSCE--EEEEETTEEEEEEEETTEE
T ss_pred             eCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCC---CCEE--EEEEECCEEEEEEEECCee
Confidence            4444444444 6788887776665433367899999988754  34455444   3333  7888999888766443   


Q ss_pred             cEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC----CeEEEEEcCCCC
Q 001310          601 VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE----NRIKILETPESN  655 (1103)
Q Consensus       601 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----g~i~iw~~~~~~  655 (1103)
                      .|++|++..+ ....+..... ..+..+.++++++.++....+    +++..||+.+++
T Consensus       351 ~l~~~d~~g~-~~~~l~~p~~-~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~  407 (693)
T 3iuj_A          351 RVEQFDYEGK-RVREVALPGL-GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA  407 (693)
T ss_dssp             EEEEECTTSC-EEEEECCSSS-SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred             EEEEEECCCC-eeEEeecCCC-ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence            6889998754 4455543321 234566677888877666554    789999987764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=99.24  E-value=6.9e-06  Score=96.79  Aligned_cols=521  Identities=7%  Similarity=-0.024  Sum_probs=273.9

Q ss_pred             CCCeEEEEEecCCC-ccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce-eEEeecCCCceEEEEe
Q 001310          416 SKHIVQLYAYHGGS-DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYSFEGHGAPVYSLCP  493 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~-~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~v~~~~~  493 (1103)
                      ....|+..++.+.. ...   .+.........++|++.+.. ++++-...+.|..+++..... ...+...-.....+++
T Consensus        16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv   91 (619)
T 3s94_A           16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC   91 (619)
T ss_dssp             CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred             ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence            34567888877542 111   12223445789999997774 444555567899999776532 2233333356788888


Q ss_pred             eecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec
Q 001310          494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1103)
                      .+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-..  ....|...++...........
T Consensus        92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g--~~~~I~r~~~dG~~~~~l~~~  168 (619)
T 3s94_A           92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRFIIINS  168 (619)
T ss_dssp             ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECS--SSCEEEEEETTSCSCEEEECS
T ss_pred             Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccC--CCCEEEEEECCCCceEEEEeC
Confidence            653 34566666678899999988765544443444556789999987666665321  134577777654333222222


Q ss_pred             ccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          574 LQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       574 ~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      .   ......+++++++..|+.+. ..+.|...|+............  ......+++..+ .++++-...+.|...|..
T Consensus       169 ~---~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          169 E---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED-ILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             S---CSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred             C---CCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence            2   25678999999877777654 5678888988764443333211  223467787765 344444456789999988


Q ss_pred             CCCeeEeccccccceeeeEEe-cCCceeee-ec-----cCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310          653 ESNSVDAAGVLSDNLRKLSVN-PISTVTGA-GI-----ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1103)
Q Consensus       653 ~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~-~~-----~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1103)
                      +++....+.........+.+. |.....+. .+     .-..+.+.   +|......+...+|....             
T Consensus       243 tg~~~~~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~---~~~~~~~~C~C~~g~~l~-------------  306 (619)
T 3s94_A          243 TGEGLREIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLM---SPVKPFYQCACPTGVKLL-------------  306 (619)
T ss_dssp             SCCCCEECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEE---CSSTTSEEEECCTTCCBC-------------
T ss_pred             CCcccEEEecCCCCCcEEEEEccccCCCccccccCCCCcccceEEC---CCCCCCceEeCCchheec-------------
Confidence            776655544333333333332 11100000 00     00000000   000000000000000000             


Q ss_pred             eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1103)
Q Consensus       726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  805 (1103)
                              .....|.  .....+|+. +..+.|+..++.....                    . .....+   ..-..+
T Consensus       307 --------~d~~~C~--~~~~~~Ll~-~~~~~i~~i~l~~~~~--------------------~-~~~~~~---~~l~~~  351 (619)
T 3s94_A          307 --------ENGKTCK--DGATELLLL-ARRTDLRRISLDTPDF--------------------T-DIVLQL---EDIRHA  351 (619)
T ss_dssp             --------TTSSCBC--SSCSEEEEE-EESSCEEEEESSSTTC--------------------C-CEECCC---SCCSSE
T ss_pred             --------ccCcccC--CCCceEEEE-EcccceEEEecCCCcc--------------------c-eeEEec---cccCcc
Confidence                    0000000  001122333 3334455444432211                    0 000111   123456


Q ss_pred             eEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEe-
Q 001310          806 PCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-  882 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l-  882 (1103)
                      .+++|.+.+..|..+.  .+.|..++.........+...-.....+|+.+.++++..+-+..+.|.+.++.... ...+ 
T Consensus       352 ~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~  430 (619)
T 3s94_A          352 IAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILI  430 (619)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEE
T ss_pred             EEEEEEcCCCeEEEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEE
Confidence            7899998666666654  57899998875433333333335677899986355566666667899999987543 3333 


Q ss_pred             ccCCCCEEEEEEccCCCEEEEEeC--CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCe
Q 001310          883 EGHSKRVTGLVFSDALNILVSSGG--DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETH  958 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg~~l~s~s~--dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~  958 (1103)
                      ...-....+|++.|....|..+..  ...|...+++......  .+   ....   .....+++++++..|..+  ..+.
T Consensus       431 ~~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~--l~---~~~l---~~P~GlalD~~~~~LY~aD~~~~~  502 (619)
T 3s94_A          431 SEDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVV--LV---NTSL---GWPNGLALDYDEGKIYWGDAKTDK  502 (619)
T ss_dssp             CTTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE--EE---CSSC---SCEEEEEEETTTTEEEEEETTTTE
T ss_pred             ECCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEE--EE---eCCC---CCCeeeEEcccCCEEEEEECCCCE
Confidence            334456899999997444444432  3567777776533211  11   1111   257899999988888775  5568


Q ss_pred             EEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCce
Q 001310          959 LAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       959 v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      |..++++... ...+....-....+++...+ ...++-...+.|..-|..+|.
T Consensus       503 I~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g~  553 (619)
T 3s94_A          503 IEVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSAE  553 (619)
T ss_dssp             EEEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSCC
T ss_pred             EEEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCCc
Confidence            9999986432 23322222223345665443 333443455678888887773

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.23  E-value=3e-09  Score=127.98  Aligned_cols=193  Identities=15%  Similarity=0.171  Sum_probs=132.7

Q ss_pred             CCeEEEEEcCCceeeEEecCCC-------------------------------CCeeEEEEcCCCCCEEEEEeCCCe---
Q 001310          822 GGVISLYIVMTFKTILTIMPPS-------------------------------PTATSLAFNPHDNNVIAIGMDDST---  867 (1103)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~d~~~lasg~~dg~---  867 (1103)
                      ++.|..||..+|+.+.++....                               .....++++| ++.+++++..++.   
T Consensus       182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~  260 (689)
T 1yiq_A          182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD  260 (689)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence            4677778888888776654210                               0113578998 6778888888764   


Q ss_pred             ----------------EEEEEcCCceeEEEecc--CC-------CCEEEEEEccCCC---EEEEEeCCCeEEEEEcCCCc
Q 001310          868 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG  919 (1103)
Q Consensus       868 ----------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~l~s~s~dg~I~iwd~~~~~  919 (1103)
                                      |..+|..+|+.+..+..  |.       .++.......+|+   .++.++.+|.++++|..+|+
T Consensus       261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  340 (689)
T 1yiq_A          261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE  340 (689)
T ss_dssp             HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence                            99999999999887764  32       1222222333665   78899999999999999998


Q ss_pred             eeeeeeeec------------------------CCCcc--cCC-----CCceEEEEcCCCCEEEEE-e------------
Q 001310          920 IQTCRSLQT------------------------PDGVM--TLA-----PSETHIQFHKDQTRFLLV-H------------  955 (1103)
Q Consensus       920 ~~~~~~~~~------------------------~~~~~--~~~-----~~v~~l~fs~dg~~l~~~-~------------  955 (1103)
                      ......+..                        ..+..  ...     ..-..++|+|+..++.+. .            
T Consensus       341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~  420 (689)
T 1yiq_A          341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA  420 (689)
T ss_dssp             EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred             EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence            753221110                        00000  000     012347899998888763 1            


Q ss_pred             ---------------------------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcE
Q 001310          956 ---------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTL 1002 (1103)
Q Consensus       956 ---------------------------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v 1002 (1103)
                                                       ++.|..||+.+|+.+.+...  ..++..-.++..+..+++++.||.|
T Consensus       421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l  498 (689)
T 1yiq_A          421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRV  498 (689)
T ss_dssp             CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEE
T ss_pred             ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcE
Confidence                                             36799999999999877432  2344445677788899999999999


Q ss_pred             EEEeCCCceeEEeec
Q 001310         1003 SIHEASNLEVQCRIL 1017 (1103)
Q Consensus      1003 ~vWd~~~~~~~~~~~ 1017 (1103)
                      +.||.++|+.+.++.
T Consensus       499 ~a~D~~tG~~lw~~~  513 (689)
T 1yiq_A          499 IAYAADTGEKLWEQP  513 (689)
T ss_dssp             EEEETTTCCEEEEEE
T ss_pred             EEEECCCCccceeee
Confidence            999999999998877

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.23  E-value=2.5e-10  Score=124.46  Aligned_cols=272  Identities=10%  Similarity=-0.039  Sum_probs=173.9

Q ss_pred             eEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe--------
Q 001310          348 TLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY--------  415 (1103)
Q Consensus       348 ~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~--------  415 (1103)
                      ++.++...++    +|.+.|..+++.+.+...                  +. .+  .+++||||+++.++.        
T Consensus        33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~v------------------G~-~P--~i~~spDg~~lyVan~~~~r~~~   91 (368)
T 1mda_H           33 RSHITLPAYFAGTTENWVSCAGCGVTLGHSLG------------------AF-LS--LAVAGHSGSDFALASTSFARSAK   91 (368)
T ss_dssp             EEEEEECTTTCSSEEEEEEETTTTEEEEEEEE------------------CT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred             eEEEECCccCCccceEEEEECCCCeEEEEEeC------------------CC-CC--ceEECCCCCEEEEEccccccccc
Confidence            4555555555    888999999998876332                  22 34  699999999999886        


Q ss_pred             --CCCeEEEEEecCCCccccceEecc-c----cccEEEEEEecCCCceEEEEEc--CCCceEE--EeCCCCceeEEeecC
Q 001310          416 --SKHIVQLYAYHGGSDARQQLEIDA-H----VGNVNDLAFSAPCKQISVITCG--DDKTIKV--WDAVTGSRTYSFEGH  484 (1103)
Q Consensus       416 --~d~~i~iwd~~~~~~~~~~~~l~~-h----~~~v~~~~~s~d~~~~~l~s~~--~d~~i~i--wd~~~~~~~~~~~~~  484 (1103)
                        .++.|.+||..+++.+..+. +.+ .    ......++|+|||++  ++.+.  .+..|.+  +|+.+   +..+...
T Consensus        92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~  165 (368)
T 1mda_H           92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA  165 (368)
T ss_dssp             SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred             CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence              36789999999988766432 210 0    123457899999995  44443  3567888  99877   4444321


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCC-----CCeeE----EecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDS-----LGARV----DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1103)
                      . .   ..+.+... ..+++.+.||.+.+.++++     ++...    .+.....+.   + ++++..++..+.     +
T Consensus       166 ~-~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~  231 (368)
T 1mda_H          166 S-C---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S  231 (368)
T ss_dssp             S-C---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred             C-c---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence            1 1   12233322 3456667788888888876     22111    011122233   3 666666655543     3


Q ss_pred             eEEEEeCCCCe--eEEEEecc-------cccCCceEEEEEcCCCCEEEEEeC---------CCcEEEEECCCCeeEEEEc
Q 001310          556 FLVEWNESEGA--IKRTYQGL-------QLQHNSVSVVHFDTAKDQILAAGD---------DHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       556 ~i~iwd~~~~~--~~~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~  617 (1103)
                      .+.+.|..++.  .+..+...       .........++++|++++++.+..         ++.+.++|+.+++.+..+.
T Consensus       232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~  311 (368)
T 1mda_H          232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS  311 (368)
T ss_dssp             CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred             EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence            48888886532  22222110       000011122679999999887543         2356699999999988887


Q ss_pred             CCCCCCCCceEEEecCCC-EEEEEE-CCCeEEEEEcCCCCeeEecccc
Q 001310          618 AGGGLPENPRICFNKNGT-LLAVIA-NENRIKILETPESNSVDAAGVL  663 (1103)
Q Consensus       618 ~~~~~~~v~~v~~s~~g~-~l~~~~-~dg~i~iw~~~~~~~~~~~~~~  663 (1103)
                      ...   ....++|+|||+ ++++.. .++.|.++|+.+.+.+..+...
T Consensus       312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            543   368999999998 455666 5899999999999888877643

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.22  E-value=2.7e-10  Score=125.45  Aligned_cols=273  Identities=8%  Similarity=-0.004  Sum_probs=175.4

Q ss_pred             ccEEEEEEecCCcEEEEeec--CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEec
Q 001310          735 NKISRLTYNNGGQAIFALAS--NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSK  812 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l~~~~~--dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~  812 (1103)
                      .....++++++|+.+++...  ++.++||.+.....            .-|-  ...      ....++...+..+++++
T Consensus        17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g~~------------~~~p--~~~------~~~~~~~~~p~gv~~d~   76 (343)
T 2qe8_A           17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQDGL------------IPFP--PQS------GNAIITFDTVLGIKSDG   76 (343)
T ss_dssp             SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETTEE------------EESC--CCC------SSCCCCCSCEEEEEECS
T ss_pred             CCcceEEECCCCCEEEEeCCCCCCceEEEEECCCCe------------ecCC--Ccc------cCcccceeEeeEEEEcC
Confidence            46789999999998777532  34356666541110            0000  000      00113567889999999


Q ss_pred             CCCEEEEEc------CCeEEEEEcCCceeeEEecCC------CCCeeEEEEcCCCCCEEEEEe---CCCeEEEEEcCCce
Q 001310          813 NDAYLFSAS------GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIGM---DDSTILIYNARSSE  877 (1103)
Q Consensus       813 d~~~l~~~~------dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg~---~dg~v~iwd~~~~~  877 (1103)
                      +|+++++-.      ++.|.+||+.+++.+..+..+      ...+..++++++++..+++..   .++.|.+||+.+++
T Consensus        77 ~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~  156 (343)
T 2qe8_A           77 NGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGL  156 (343)
T ss_dssp             SSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCC
T ss_pred             CCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCC
Confidence            998777653      478999999999877766432      235689999984455555554   67899999999988


Q ss_pred             eEEEeccCCCCEE-EEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e
Q 001310          878 VISKLEGHSKRVT-GLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H  955 (1103)
Q Consensus       878 ~~~~l~~h~~~V~-~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~  955 (1103)
                      ....+.+|..... ...++++|..+.+.+.++.++.|..                      .+..++|||||+.|.++ .
T Consensus       157 ~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~----------------------~~~gia~s~dg~~ly~~~~  214 (343)
T 2qe8_A          157 AARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHL----------------------GVNGIVLDAENEWLYLSPM  214 (343)
T ss_dssp             EEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCC----------------------CEEEEEECTTSCEEEEEES
T ss_pred             EEEEecCCCcccccccceeECCEEEEeccCCCceeceec----------------------ccceeEeccCCCEEEEEeC
Confidence            7777766533211 1455667888888888887765531                      25689999999988885 3


Q ss_pred             C-CeEEEEECC---Cce-----EEEE-eeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCC
Q 001310          956 E-THLAIYEAE---ELT-----CLKQ-WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPT 1025 (1103)
Q Consensus       956 d-~~v~iwd~~---~~~-----~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~ 1025 (1103)
                      . +.++.++..   .+.     .... ...++......++++++|.++++...++.|.+||..+|+...... .      
T Consensus       215 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~-~------  287 (343)
T 2qe8_A          215 HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT-D------  287 (343)
T ss_dssp             SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-C------
T ss_pred             CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-C------
Confidence            3 356555532   110     0000 011233456789999999999988889999999996676432222 0      


Q ss_pred             CCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEc
Q 001310         1026 TSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIE 1070 (1103)
Q Consensus      1026 ~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~ 1070 (1103)
                                   ....++..+++.|+ +.++++....+.+.+|.
T Consensus       288 -------------~~~~~p~~va~~~~-g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          288 -------------EKLSWTDSFNFGSD-GYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             -------------GGGSCEEEEEECTT-SCEEEEECCGGGSGGGB
T ss_pred             -------------CceecCCeeEECCC-CcEEEEeCccccccccc
Confidence                         01134567888887 78888877665554443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.21  E-value=5.8e-09  Score=113.76  Aligned_cols=225  Identities=10%  Similarity=0.009  Sum_probs=146.9

Q ss_pred             EEEEEEecCCcEEE-EeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310          737 ISRLTYNNGGQAIF-ALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1103)
Q Consensus       737 i~~~~~s~~g~~l~-~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  815 (1103)
                      ..+.+|+|++..++ +...++.|..|+....                      . .....     ....+.+++++++|+
T Consensus        51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~----------------------~-~~~~~-----~~~~v~~i~~~~dg~  102 (326)
T 2ghs_A           51 GEGPTFDPASGTAWWFNILERELHELHLASG----------------------R-KTVHA-----LPFMGSALAKISDSK  102 (326)
T ss_dssp             EEEEEEETTTTEEEEEEGGGTEEEEEETTTT----------------------E-EEEEE-----CSSCEEEEEEEETTE
T ss_pred             CcCCeEeCCCCEEEEEECCCCEEEEEECCCC----------------------c-EEEEE-----CCCcceEEEEeCCCe
Confidence            45678999855554 4445677877775432                      1 11111     234688999999999


Q ss_pred             EEEEEcCCeEEEEEcCCceeeEEecC----CCCCeeEEEEcCCCCCEEEEEeC------CCeEEEEEcCCceeEEEeccC
Q 001310          816 YLFSASGGVISLYIVMTFKTILTIMP----PSPTATSLAFNPHDNNVIAIGMD------DSTILIYNARSSEVISKLEGH  885 (1103)
Q Consensus       816 ~l~~~~dg~i~iwd~~~~~~~~~~~~----~~~~i~~l~~s~~d~~~lasg~~------dg~v~iwd~~~~~~~~~l~~h  885 (1103)
                      ++++. ++.|.+||..+++.......    ....+..++++| +|+++++...      .+.|+.++  +++.. .+..+
T Consensus       103 l~v~~-~~gl~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~-~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~  177 (326)
T 2ghs_A          103 QLIAS-DDGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHP-SGALWIGTMGRKAETGAGSIYHVA--KGKVT-KLFAD  177 (326)
T ss_dssp             EEEEE-TTEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECT-TSCEEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEE
T ss_pred             EEEEE-CCCEEEEECCCCcEEEEeeCCCCCCCCCCCCEEECC-CCCEEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCC
Confidence            88876 44599999988775433221    123688999999 7877665432      25666666  55543 33334


Q ss_pred             CCCEEEEEEccCCCEEEEE-eCCCeEEEEEcC--CC-ceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEE
Q 001310          886 SKRVTGLVFSDALNILVSS-GGDAQIFVWDVD--GW-GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLA  960 (1103)
Q Consensus       886 ~~~V~~l~~s~dg~~l~s~-s~dg~I~iwd~~--~~-~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~  960 (1103)
                      ......++|+|||+.|..+ +.++.|.+|+++  ++ +......+.......   ..+..++++++|.+.++. .++.|.
T Consensus       178 ~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~---~~p~gi~~d~~G~lwva~~~~~~v~  254 (326)
T 2ghs_A          178 ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIK---GGMDGSVCDAEGHIWNARWGEGAVD  254 (326)
T ss_dssp             ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSS---SEEEEEEECTTSCEEEEEETTTEEE
T ss_pred             CcccCCeEEcCCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCC---CCCCeeEECCCCCEEEEEeCCCEEE
Confidence            4457889999999876554 457899999986  55 432222222221111   246789999999987775 468899


Q ss_pred             EEECCCceEEEEeeCCCCcCeEEEEEc-cCCCEEEEEecC
Q 001310          961 IYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVD  999 (1103)
Q Consensus       961 iwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~d  999 (1103)
                      +||. +++.+..+ ..+...+++++|+ +|++.|++++..
T Consensus       255 ~~d~-~g~~~~~i-~~~~~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARY-EVPGKQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEE-ECSCSBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEE-ECCCCCcEEEEEecCCCCEEEEEecC
Confidence            9998 57766553 3345679999998 898877655543

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.20  E-value=3.8e-08  Score=110.06  Aligned_cols=211  Identities=10%  Similarity=0.057  Sum_probs=128.5

Q ss_pred             cCCeEEEEEcCCceeeEEecCCCCCe-----eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC----EEE
Q 001310          821 SGGVISLYIVMTFKTILTIMPPSPTA-----TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR----VTG  891 (1103)
Q Consensus       821 ~dg~i~iwd~~~~~~~~~~~~~~~~i-----~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~----V~~  891 (1103)
                      .++.+..+|..+++.+..........     ......  + ..+++++.+|.+..+|..+|+.+.........    +..
T Consensus       151 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~-~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~  227 (376)
T 3q7m_A          151 SNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--F-GAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGSTEIDR  227 (376)
T ss_dssp             TTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--T-TEEEECCTTTEEEEEETTTCCEEEEEECCC---------
T ss_pred             CCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--C-CEEEEEcCCCEEEEEECCCCcEEEEEecccCCCCccccc
Confidence            35667777777776666554322111     222232  2 36777888999999999999988766532110    000


Q ss_pred             ---EEEcc--CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC
Q 001310          892 ---LVFSD--ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE  966 (1103)
Q Consensus       892 ---l~~s~--dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~  966 (1103)
                         +.-+|  .+..+..++.++.+..+|..+|+.......    +      ....+... ++..++...++.|..+|..+
T Consensus       228 ~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~----~------~~~~~~~~-~~~l~~~~~~g~l~~~d~~t  296 (376)
T 3q7m_A          228 LSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKREL----G------SVNDFIVD-GNRIYLVDQNDRVMALTIDG  296 (376)
T ss_dssp             --CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECC----C------CEEEEEEE-TTEEEEEETTCCEEEEETTT
T ss_pred             ccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccC----C------CCCCceEE-CCEEEEEcCCCeEEEEECCC
Confidence               00111  245677778899999999999885432211    1      22333332 44444445788999999999


Q ss_pred             ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceee-E
Q 001310          967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYP-H 1045 (1103)
Q Consensus       967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~ 1045 (1103)
                      |+.+..........+.....  .+..|++++.+|.|.++|..+|+.+.+.....                   ..+.+ .
T Consensus       297 G~~~w~~~~~~~~~~~~~~~--~~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~-------------------~~~~~~~  355 (376)
T 3q7m_A          297 GVTLWTQSDLLHRLLTSPVL--YNGNLVVGDSEGYLHWINVEDGRFVAQQKVDS-------------------SGFQTEP  355 (376)
T ss_dssp             CCEEEEECTTTTSCCCCCEE--ETTEEEEECTTSEEEEEETTTCCEEEEEECCT-------------------TCBCSCC
T ss_pred             CcEEEeecccCCCcccCCEE--ECCEEEEEeCCCeEEEEECCCCcEEEEEecCC-------------------CcceeCC
Confidence            99887643222223333333  24678888899999999999999887765211                   01111 1


Q ss_pred             EEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1046 AIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1046 ~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      .+.     +..|+.++.+|.|+.|+.
T Consensus       356 ~~~-----~~~l~v~~~~G~l~~~~~  376 (376)
T 3q7m_A          356 VAA-----DGKLLIQAKDGTVYSITR  376 (376)
T ss_dssp             EEE-----TTEEEEEBTTSCEEEEEC
T ss_pred             EEE-----CCEEEEEeCCCEEEEEeC
Confidence            111     467888999999999863

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.19  E-value=2.9e-10  Score=124.08  Aligned_cols=190  Identities=8%  Similarity=0.045  Sum_probs=135.2

Q ss_pred             ccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310          735 NKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~  814 (1103)
                      ..+..+++++....+++++.++ +.+|++..........   ...   +.     .....     .+.. |+.++|  |+
T Consensus        38 ~~~nlLais~~~gll~a~~~~~-l~v~~~~~l~~~~~~~---~~~---~~-----~~~~~-----~lp~-V~~l~f--d~   97 (388)
T 1xip_A           38 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSD---STP---LT-----FKWEK-----EIPD-VIFVCF--HG   97 (388)
T ss_dssp             SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSS---SCC---CC-----CSEEE-----ECTT-EEEEEE--ET
T ss_pred             ccccEEEEcCCCCEEEEeCCCE-EEEEEhhHhhhhhccc---ccc---cc-----ceEEe-----eCCC-eeEEEE--CC
Confidence            3678899999999999999885 4458865422100000   000   00     00111     1445 999999  99


Q ss_pred             CEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEE
Q 001310          815 AYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF  894 (1103)
Q Consensus       815 ~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~  894 (1103)
                      ++|+++.++.|++||+.+.........+...+.++.+.+ .  -+++++.||.|.+||+.++....    +...|+|++|
T Consensus        98 ~~L~v~~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~-p--~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~W  170 (388)
T 1xip_A           98 DQVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDV  170 (388)
T ss_dssp             TEEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEE
T ss_pred             CEEEEEcCCcEEEEEchhhhccCccceeecceeeEEecC-C--CEEEEECCCCEEEEEccCCcccc----ccCCceEEEE
Confidence            999999889999999987766666666777788888776 3  38889999999999999887643    4568999999


Q ss_pred             ccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC---CcccCCCCceEEEEcCCCCEEEE
Q 001310          895 SDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD---GVMTLAPSETHIQFHKDQTRFLL  953 (1103)
Q Consensus       895 s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~---~~~~~~~~v~~l~fs~dg~~l~~  953 (1103)
                      ||+|  ++.|..||++++|+.+.++......+..+.   .+..+...|.++.|.+++.++++
T Consensus       171 SpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~  230 (388)
T 1xip_A          171 TNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV  230 (388)
T ss_dssp             CSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred             cCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence            9999  778999999999999887742222232111   00112237999999999999998

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.19  E-value=1e-08  Score=111.89  Aligned_cols=225  Identities=13%  Similarity=0.022  Sum_probs=149.3

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      -..+.+|+|+++.+++++..++.|..||..+++...                    +. ....|.+++|+|+|+++++. 
T Consensus        50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~-  107 (326)
T 2ghs_A           50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS-  107 (326)
T ss_dssp             BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred             CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence            456789999876688888888999999998875331                    10 23579999999999987765 


Q ss_pred             CCCeEEEEEecCCCccccceEec-c-ccccEEEEEEecCCCceEEEEEcC------CCceEEEeCCCCceeEEeecCCCc
Q 001310          416 SKHIVQLYAYHGGSDARQQLEID-A-HVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGHGAP  487 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~-~-h~~~v~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~~~~  487 (1103)
                      .+ .|.+||..+++... ..... + ....+.+++++|+|+  ++++...      .+.|..+|  +++.. .+..+...
T Consensus       108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~--~g~~~-~~~~~~~~  180 (326)
T 2ghs_A          108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA--KGKVT-KLFADISI  180 (326)
T ss_dssp             TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE--TTEEE-EEEEEESS
T ss_pred             CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe--CCcEE-EeeCCCcc
Confidence            44 49999998876321 11111 1 124689999999998  4444332      24455555  45443 33233345


Q ss_pred             eEEEEeeecCCccEEE-EEECCCeEEEEEcC--CC-Ce-----eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEE
Q 001310          488 VYSLCPHAKENIHFIF-SISVDGKIKAWLYD--SL-GA-----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLV  558 (1103)
Q Consensus       488 v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~--~~-~~-----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~  558 (1103)
                      ...++|+  +++..++ +.+.++.|.+|+++  ++ ..     ...+.........++++++|++.++...    .+.|.
T Consensus       181 ~~~i~~s--~dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~  254 (326)
T 2ghs_A          181 PNSICFS--PDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVD  254 (326)
T ss_dssp             EEEEEEC--TTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEE
T ss_pred             cCCeEEc--CCCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEE
Confidence            6677875  4666554 44567899999986  44 21     1122223446778999999987776543    34599


Q ss_pred             EEeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeCC
Q 001310          559 EWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDD  599 (1103)
Q Consensus       559 iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~d  599 (1103)
                      .||. +++.+..+..+.   ..+.+++|+ ++++.|++++..
T Consensus       255 ~~d~-~g~~~~~i~~~~---~~~~~~af~g~d~~~L~vt~~~  292 (326)
T 2ghs_A          255 RYDT-DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTSAR  292 (326)
T ss_dssp             EECT-TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEEBC
T ss_pred             EECC-CCCEEEEEECCC---CCcEEEEEecCCCCEEEEEecC
Confidence            9998 677777776554   579999998 888877665543

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=99.17  E-value=9.8e-09  Score=123.22  Aligned_cols=332  Identities=10%  Similarity=0.045  Sum_probs=192.3

Q ss_pred             cEEEEEECCCeEEEEEcCCCCeeEEecCCCcc-----------EEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG-----------CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~-----------i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      ..++.++.++.|..+|..+++.+..+......           ...+++  ++..+++++.    ++.|+.+|..+|+.+
T Consensus        78 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~--~~~~v~v~~~----dg~l~alD~~tG~~~  151 (677)
T 1kb0_A           78 GIMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVAL--WKGKVYVGAW----DGRLIALDAATGKEV  151 (677)
T ss_dssp             TEEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceE--ECCEEEEEcC----CCEEEEEECCCCCEE
Confidence            36677777888888999888888776554321           112233  4566776654    567999999999998


Q ss_pred             EEEecc-cccC-CceEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEEcCCCCC-----------------
Q 001310          569 RTYQGL-QLQH-NSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL-----------------  622 (1103)
Q Consensus       569 ~~~~~~-~~~~-~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~-----------------  622 (1103)
                      -.+... .... ..+.. ...  .+..+++++.      +|.|+.||..+|+.+..+......                 
T Consensus       152 W~~~~~~~~~~~~~~~~~p~v--~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w  229 (677)
T 1kb0_A          152 WHQNTFEGQKGSLTITGAPRV--FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTW  229 (677)
T ss_dssp             EEEETTTTCCSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTS
T ss_pred             eeecCCcCcCcCcccccCcEE--ECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCccccccccccccccccc
Confidence            888764 1000 11111 111  2345666543      799999999999999877643221                 


Q ss_pred             -------------CCCceEEEecCCCEEEEEECCC-------------------eEEEEEcCCCCeeEeccccccceeee
Q 001310          623 -------------PENPRICFNKNGTLLAVIANEN-------------------RIKILETPESNSVDAAGVLSDNLRKL  670 (1103)
Q Consensus       623 -------------~~v~~v~~s~~g~~l~~~~~dg-------------------~i~iw~~~~~~~~~~~~~~~~~i~~~  670 (1103)
                                   .....++++|++.++++++.++                   .|..+|..+++.+..++....     
T Consensus       230 ~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~-----  304 (677)
T 1kb0_A          230 DPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPG-----  304 (677)
T ss_dssp             CGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-----
T ss_pred             cccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCC-----
Confidence                         0113578899988988887764                   355555555544433321100     


Q ss_pred             EEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCC---c
Q 001310          671 SVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGG---Q  747 (1103)
Q Consensus       671 ~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g---~  747 (1103)
                                                              ..|+...                .....-+....+|   .
T Consensus       305 ----------------------------------------d~wd~~~----------------~~~p~l~~~~~dG~~~~  328 (677)
T 1kb0_A          305 ----------------------------------------DNWDYTS----------------TQPMILADIKIAGKPRK  328 (677)
T ss_dssp             ----------------------------------------CCSCCCC----------------CSCCEEEEEEETTEEEE
T ss_pred             ----------------------------------------ccccccc----------------CCCcEEEecccCCcEee
Confidence                                                    0111110                0111112223356   5


Q ss_pred             EEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceee----------ccCCCCCCCCCeeEEEEecCCCEE
Q 001310          748 AIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV----------NDTTDSNSQEAVPCFALSKNDAYL  817 (1103)
Q Consensus       748 ~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~v~~l~~s~d~~~l  817 (1103)
                      .++.++.+|.+.++|..+.+....-......-..-+| .++.....          ...+...-...-..++++|++.++
T Consensus       329 ~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d-~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~  407 (677)
T 1kb0_A          329 VILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYD-KHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV  407 (677)
T ss_dssp             EEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEC-TTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred             EEEEECCCCEEEEEECCCCCEeccccccccCcccccC-CCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEE
Confidence            6777777888888887665441111100000000111 22221110          000000000111367889988877


Q ss_pred             EEEc--------------------------------------------CCeEEEEEcCCceeeEEecCCCCCeeEEEEcC
Q 001310          818 FSAS--------------------------------------------GGVISLYIVMTFKTILTIMPPSPTATSLAFNP  853 (1103)
Q Consensus       818 ~~~~--------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~  853 (1103)
                      .+..                                            .+.|..||+.+++.+.++.. ...+....++.
T Consensus       408 yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~-~~~~~~g~~~~  486 (677)
T 1kb0_A          408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH-VSPWNGGTLTT  486 (677)
T ss_dssp             EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE-SSSCCCCEEEE
T ss_pred             EEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC-CCCCcCcceEe
Confidence            7642                                            16799999999999888763 33344455666


Q ss_pred             CCCCEEEEEeCCCeEEEEEcCCceeEEEeccCC-CCEEEEEEccCCCEEEE
Q 001310          854 HDNNVIAIGMDDSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVS  903 (1103)
Q Consensus       854 ~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s  903 (1103)
                       ++.++++++.||.+++||..+|+.+..+.... ....-+.++.+|+.++.
T Consensus       487 -~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~  536 (677)
T 1kb0_A          487 -AGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVS  536 (677)
T ss_dssp             -TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             -CCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEE
Confidence             56688889999999999999999999887433 23344667788875554

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=99.17  E-value=8e-08  Score=107.43  Aligned_cols=150  Identities=15%  Similarity=0.071  Sum_probs=99.3

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCC---------CceEE-EEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG---------APVYS-LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD  526 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~---------~~v~~-~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~  526 (1103)
                      .++.++.++.|..+|..+|+.+.......         ..+.+ ...    ++..++.++.++.|..+|..+++......
T Consensus        55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            47778889999999999999987765432         22222 222    33578888999999999999998877665


Q ss_pred             CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccC--CceEEEEEcCCCCEEEEEeCCCcEEE
Q 001310          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH--NSVSVVHFDTAKDQILAAGDDHVIKI  604 (1103)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~~~dg~i~i  604 (1103)
                      ........... .+ ..+++++.    ++.|+.+|..+|+.+..+.......  .........  +..+++++.++.+..
T Consensus       131 ~~~~~~~~p~~-~~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~  202 (376)
T 3q7m_A          131 VAGEALSRPVV-SD-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA  202 (376)
T ss_dssp             CSSCCCSCCEE-ET-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred             CCCceEcCCEE-EC-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence            44322111222 23 45666543    5579999999999887766533000  000111122  457888888999999


Q ss_pred             EECCCCeeEEEEcC
Q 001310          605 WDMNKVQLLTTIDA  618 (1103)
Q Consensus       605 wd~~~~~~~~~~~~  618 (1103)
                      +|..+|+.+.....
T Consensus       203 ~d~~tG~~~w~~~~  216 (376)
T 3q7m_A          203 VLMEQGQMIWQQRI  216 (376)
T ss_dssp             EETTTCCEEEEEEC
T ss_pred             EECCCCcEEEEEec
Confidence            99999998877654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.14  E-value=1.5e-08  Score=109.57  Aligned_cols=225  Identities=11%  Similarity=0.045  Sum_probs=150.4

Q ss_pred             ccEEEEEEecCCcEE-EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC
Q 001310          735 NKISRLTYNNGGQAI-FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  813 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l-~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  813 (1103)
                      ......+|+++|+.| ++...++.+..|+...                       . .....    .....+..++++++
T Consensus        45 ~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~g-----------------------~-~~~~~----~~~~~~~gl~~d~d   96 (305)
T 3dr2_A           45 TWSEGPAWWEAQRTLVWSDLVGRRVLGWREDG-----------------------T-VDVLL----DATAFTNGNAVDAQ   96 (305)
T ss_dssp             SSEEEEEEEGGGTEEEEEETTTTEEEEEETTS-----------------------C-EEEEE----ESCSCEEEEEECTT
T ss_pred             cCccCCeEeCCCCEEEEEECCCCEEEEEeCCC-----------------------C-EEEEe----CCCCccceeeECCC
Confidence            456788999999954 4555568888776421                       1 11110    13456789999999


Q ss_pred             CCEEEEEc-CCeEEEEEcCCceeeEEec---C-CCCCeeEEEEcCCCCCEEEE----EeC-------------CCeEEEE
Q 001310          814 DAYLFSAS-GGVISLYIVMTFKTILTIM---P-PSPTATSLAFNPHDNNVIAI----GMD-------------DSTILIY  871 (1103)
Q Consensus       814 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~---~-~~~~i~~l~~s~~d~~~las----g~~-------------dg~v~iw  871 (1103)
                      |+++++.. ++.|.+|+.. ++......   + ....+..++++| +|+++++    |..             .+.|+.|
T Consensus        97 G~l~v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~-dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~  174 (305)
T 3dr2_A           97 QRLVHCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVAR-DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRL  174 (305)
T ss_dssp             SCEEEEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECT-TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEE
T ss_pred             CCEEEEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECC-CCCEEEeCcCCCccccccccccccccCCCeEEEE
Confidence            99777665 4789999986 54322211   1 123567899999 8888886    432             3568888


Q ss_pred             EcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEc
Q 001310          872 NARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH  945 (1103)
Q Consensus       872 d~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs  945 (1103)
                      |..+++.....  .......++|+||++.|..+...      +.|.+|++..+.......+.....     +.+..++++
T Consensus       175 d~~~g~~~~~~--~~~~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~-----~~pdgi~~d  247 (305)
T 3dr2_A          175 PPDGSPLQRMA--DLDHPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPD-----GLPDGFCVD  247 (305)
T ss_dssp             CSSSCCCEEEE--EESSEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSS-----SCCCSEEEC
T ss_pred             cCCCCcEEEEe--cCCCCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCC-----CCCCeEEEC
Confidence            87777654433  34557889999999988777665      789999998755322222222111     235679999


Q ss_pred             CCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310          946 KDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus       946 ~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
                      ++|++.++. .+.|.+|+.+ ++.+..+... . .+.+++|++|++.|+.++.++
T Consensus       248 ~~G~lwv~~-~~gv~~~~~~-g~~~~~~~~~-~-~~~~~~f~~d~~~L~it~~~~  298 (305)
T 3dr2_A          248 RGGWLWSSS-GTGVCVFDSD-GQLLGHIPTP-G-TASNCTFDQAQQRLFITGGPC  298 (305)
T ss_dssp             TTSCEEECC-SSEEEEECTT-SCEEEEEECS-S-CCCEEEECTTSCEEEEEETTE
T ss_pred             CCCCEEEec-CCcEEEECCC-CCEEEEEECC-C-ceeEEEEeCCCCEEEEEcCCe
Confidence            999965555 4569999984 6666654432 2 588999999999888887664

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=99.12  E-value=1.9e-08  Score=120.94  Aligned_cols=333  Identities=8%  Similarity=0.035  Sum_probs=188.6

Q ss_pred             cEEEEEECCCeEEEEEcCCCCeeEEecCCCcc----------E-EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      ..++.++.++.|..+|..+++.+..+......          + ..+++  ++..+++++.    ++.|+.+|..+|+.+
T Consensus        71 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~g~v~v~~~----dg~l~AlDa~TG~~~  144 (689)
T 1yiq_A           71 GVMYTTGPFSVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAV--WKGKVYVGVL----DGRLEAIDAKTGQRA  144 (689)
T ss_dssp             TEEEEECGGGCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCCEE
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEE--ECCEEEEEcc----CCEEEEEECCCCCEe
Confidence            46777778888999999998888877543221          0 11222  3556666654    667999999999998


Q ss_pred             EEEecc-cccCCceEEEEEcC--CCCEEEEEe------CCCcEEEEECCCCeeEEEEcCCCC------------------
Q 001310          569 RTYQGL-QLQHNSVSVVHFDT--AKDQILAAG------DDHVIKIWDMNKVQLLTTIDAGGG------------------  621 (1103)
Q Consensus       569 ~~~~~~-~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~~~------------------  621 (1103)
                      -.+... ..  .....+..+|  .+..+++++      .+|.|+.||..+|+.+-.+.....                  
T Consensus       145 W~~~~~~~~--~~~~~~~~sP~v~~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~  222 (689)
T 1yiq_A          145 WSVDTRADH--KRSYTITGAPRVVNGKVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTW  222 (689)
T ss_dssp             EEEECCSCT--TSCCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTC
T ss_pred             eeecCcCCC--CCCccccCCcEEECCEEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCccccccccccccccccc
Confidence            777653 10  0001111111  133555543      378999999999999877653110                  


Q ss_pred             -----------CCCCceEEEecCCCEEEEEECCCe-------------------EEEEEcCCCCeeEeccccccceeeeE
Q 001310          622 -----------LPENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKLS  671 (1103)
Q Consensus       622 -----------~~~v~~v~~s~~g~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~i~~~~  671 (1103)
                                 ......++++|++.++++++.++.                   |..+|..+++.+...+....      
T Consensus       223 ~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~------  296 (689)
T 1yiq_A          223 FGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPG------  296 (689)
T ss_dssp             CSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTT------
T ss_pred             CCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCc------
Confidence                       011136789998899999887764                   66666666655544332100      


Q ss_pred             EecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc---E
Q 001310          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---A  748 (1103)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~  748 (1103)
                                                             ..|+..                ....+.......+|+   .
T Consensus       297 ---------------------------------------d~wd~~----------------~~~~~~l~d~~~~G~~~~~  321 (689)
T 1yiq_A          297 ---------------------------------------DAWDYT----------------ATQHMILAELPIDGKPRKV  321 (689)
T ss_dssp             ---------------------------------------CCSCCC----------------CCSCEEEEEEEETTEEEEE
T ss_pred             ---------------------------------------cccccc----------------CCCCcEEEeeccCCcEEEE
Confidence                                                   011111                001111111122443   5


Q ss_pred             EEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceee-------------ccCCCCCCCCCeeEEEEecCCC
Q 001310          749 IFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMV-------------NDTTDSNSQEAVPCFALSKNDA  815 (1103)
Q Consensus       749 l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~l~~s~d~~  815 (1103)
                      ++.++.+|.++++|..+.+...........-..-.+..++..+..             ...+...-...-..++++|+..
T Consensus       322 v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~  401 (689)
T 1yiq_A          322 LMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTG  401 (689)
T ss_dssp             EEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             EEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCC
Confidence            677777788888877665432100000000000000011110000             0000000011123478888877


Q ss_pred             EEEEEc----------------------------------------------CCeEEEEEcCCceeeEEecCCCCCeeEE
Q 001310          816 YLFSAS----------------------------------------------GGVISLYIVMTFKTILTIMPPSPTATSL  849 (1103)
Q Consensus       816 ~l~~~~----------------------------------------------dg~i~iwd~~~~~~~~~~~~~~~~i~~l  849 (1103)
                      ++.+..                                              +|.|..||+.+++.+.++..+.. ...-
T Consensus       402 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~-~~~g  480 (689)
T 1yiq_A          402 LVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTI-FNGG  480 (689)
T ss_dssp             EEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSS-CCCC
T ss_pred             EEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCC-ccCc
Confidence            776541                                              26799999999999888764432 3333


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC-EEEEEEccCCCEEEE
Q 001310          850 AFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS  903 (1103)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s  903 (1103)
                      .++. .+.++++|+.||.++.||..+|+.+.+++...+. ..-+.|+.||+..+.
T Consensus       481 ~~~t-agglvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~  534 (689)
T 1yiq_A          481 TLST-AGNLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVT  534 (689)
T ss_dssp             EEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             cceE-CCCEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEE
Confidence            4555 5668999999999999999999999888754332 244677888875443

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.12  E-value=4.6e-08  Score=106.31  Aligned_cols=237  Identities=12%  Similarity=0.061  Sum_probs=154.0

Q ss_pred             cCCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-
Q 001310          744 NGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-  821 (1103)
Q Consensus       744 ~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-  821 (1103)
                      .+++++++.+. ++.|.++|+......          +++-.......+.. +    ........+.++|+| +++++. 
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~----------p~~~k~ie~~~~~~-~----~g~s~Ph~~~~~pdG-i~Vs~~g  156 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPRE----------PKIIKVIEPEEVKK-V----SGYSRLHTVHCGPDA-IYISALG  156 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTS----------CEEEEEECHHHHHH-H----HCEEEEEEEEECSSC-EEEEEEE
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCC----------ceeeeeechhhccc-c----cCCCcccceeECCCe-EEEEcCC
Confidence            77888777655 588999997543211          11111000000000 0    011134567888999 555543 


Q ss_pred             C------CeEEEEEcCCceeeEEecCCCC---CeeEEEEcCCCCCEEEEEe-------------------CCCeEEEEEc
Q 001310          822 G------GVISLYIVMTFKTILTIMPPSP---TATSLAFNPHDNNVIAIGM-------------------DDSTILIYNA  873 (1103)
Q Consensus       822 d------g~i~iwd~~~~~~~~~~~~~~~---~i~~l~~s~~d~~~lasg~-------------------~dg~v~iwd~  873 (1103)
                      +      |.|.++|..+++.+.++.....   .-..+-|+| +++.+++..                   .+.+|.+||+
T Consensus       157 ~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~  235 (462)
T 2ece_A          157 NEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDL  235 (462)
T ss_dssp             ETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEET
T ss_pred             CcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccchhhhhhccCCEEEEEEC
Confidence            3      6799999999999998863322   234588899 888888874                   3689999999


Q ss_pred             CCceeEEEeccC-C-CCEEEEEE--ccCCCEEEEEe------CCCeEEEEEcCCCceeeeeeeecCCCccc---------
Q 001310          874 RSSEVISKLEGH-S-KRVTGLVF--SDALNILVSSG------GDAQIFVWDVDGWGIQTCRSLQTPDGVMT---------  934 (1103)
Q Consensus       874 ~~~~~~~~l~~h-~-~~V~~l~~--s~dg~~l~s~s------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~---------  934 (1103)
                      .+++.+.++.-- . .....+.|  +|+++++..+.      .+++|.+|..+.++......+........         
T Consensus       236 ~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~  315 (462)
T 2ece_A          236 RKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKP  315 (462)
T ss_dssp             TTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGG
T ss_pred             CCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccc
Confidence            999888877642 1 23455656  99999888776      46689888877665444443322221000         


Q ss_pred             ---CCCCceEEEEcCCCCEEEEE--eCCeEEEEECC---CceEEEEeeCC-------C------CcCeEEEEEccCCCEE
Q 001310          935 ---LAPSETHIQFHKDQTRFLLV--HETHLAIYEAE---ELTCLKQWFPI-------S------SVPISQATFSCDCRMV  993 (1103)
Q Consensus       935 ---~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~---~~~~~~~~~~~-------h------~~~v~~l~fs~dg~~l  993 (1103)
                         .......+.+|+||++|.++  ..+.|.+||+.   +.+.+..+..+       |      .+.-..+++||||++|
T Consensus       316 f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~L  395 (462)
T 2ece_A          316 FKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRV  395 (462)
T ss_dssp             GTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEE
T ss_pred             cccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEE
Confidence               01357899999999999997  56789999986   34555554443       1      0135789999999999


Q ss_pred             EEEe
Q 001310          994 FTSF  997 (1103)
Q Consensus       994 ~t~~  997 (1103)
                      +++.
T Consensus       396 yVaN  399 (462)
T 2ece_A          396 YVTN  399 (462)
T ss_dssp             EEEC
T ss_pred             EEEc
Confidence            9887

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=99.11  E-value=4.4e-08  Score=106.51  Aligned_cols=237  Identities=14%  Similarity=0.106  Sum_probs=151.7

Q ss_pred             EEe--cCCCEEEEEc--CCeEEEEEcCCc----eeeEEec-------CCCCCeeEEEEcCCCCCEEEEEeCC------Ce
Q 001310          809 ALS--KNDAYLFSAS--GGVISLYIVMTF----KTILTIM-------PPSPTATSLAFNPHDNNVIAIGMDD------ST  867 (1103)
Q Consensus       809 ~~s--~d~~~l~~~~--dg~i~iwd~~~~----~~~~~~~-------~~~~~i~~l~~s~~d~~~lasg~~d------g~  867 (1103)
                      .++  +++++|++.+  +++|.++|+.+.    +..+++.       .....-..+.++| ++ +++++..+      |.
T Consensus        88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~p-dG-i~Vs~~g~~~g~~~g~  165 (462)
T 2ece_A           88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGP-DA-IYISALGNEEGEGPGG  165 (462)
T ss_dssp             TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECS-SC-EEEEEEEETTSCSCCE
T ss_pred             ccCCCccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECC-Ce-EEEEcCCCcCCCCCCe
Confidence            346  8889998887  588999999765    5666662       1112456688899 77 77766555      78


Q ss_pred             EEEEEcCCceeEEEeccCC---CCEEEEEEccCCCEEEEEe-------------------CCCeEEEEEcCCCceeeeee
Q 001310          868 ILIYNARSSEVISKLEGHS---KRVTGLVFSDALNILVSSG-------------------GDAQIFVWDVDGWGIQTCRS  925 (1103)
Q Consensus       868 v~iwd~~~~~~~~~l~~h~---~~V~~l~~s~dg~~l~s~s-------------------~dg~I~iwd~~~~~~~~~~~  925 (1103)
                      |.++|..+++.+.++..-.   .--..+.|+|+++.+++..                   .+.+|.+||+.+++...  .
T Consensus       166 v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~--t  243 (462)
T 2ece_A          166 ILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIH--S  243 (462)
T ss_dssp             EEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEE--E
T ss_pred             EEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEee--E
Confidence            9999999999998887322   2234588899999999875                   36889999999875443  3


Q ss_pred             eecCCCcccCCCCceEEEE--cCCCCEEEEE-------eCCeEEEEECCCceEEEEe---eCCC----------------
Q 001310          926 LQTPDGVMTLAPSETHIQF--HKDQTRFLLV-------HETHLAIYEAEELTCLKQW---FPIS----------------  977 (1103)
Q Consensus       926 ~~~~~~~~~~~~~v~~l~f--s~dg~~l~~~-------~d~~v~iwd~~~~~~~~~~---~~~h----------------  977 (1103)
                      +.......    ....+.|  +|+|+++.++       .+++|.+|..+.|+.....   ....                
T Consensus       244 I~vg~~g~----~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~  319 (462)
T 2ece_A          244 LTLGEENR----MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAV  319 (462)
T ss_dssp             EESCTTEE----EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEE
T ss_pred             EecCCCCC----ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccC
Confidence            33321111    2455656  9999998874       3457877666554321110   0000                


Q ss_pred             CcCeEEEEEccCCCEEEEEe-cCCcEEEEeCCC---ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCC
Q 001310          978 SVPISQATFSCDCRMVFTSF-VDGTLSIHEASN---LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLK 1053 (1103)
Q Consensus       978 ~~~v~~l~fs~dg~~l~t~~-~dg~v~vWd~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~ 1053 (1103)
                      ......+.+|+||++|.++. ..+.|.+||+..   .+++..+....-.. .+.+.      .|......+..+..+|+ 
T Consensus       320 ~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~-~~~~~------~G~~~~ggPr~~~lSpD-  391 (462)
T 2ece_A          320 PPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFH-RADHP------AGHKLTGAPQMLEISRD-  391 (462)
T ss_dssp             CCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTT-CBCCT------TSCCCCSCCCCEEECTT-
T ss_pred             CCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeec-ccccc------ccccCCCCCCEEEEcCC-
Confidence            23578899999999998876 468999999862   35555554221100 00000      00101123456788998 


Q ss_pred             CcEEEEEe
Q 001310         1054 PTQFAVGL 1061 (1103)
Q Consensus      1054 ~~~l~~~~ 1061 (1103)
                      |.+|+++.
T Consensus       392 Gk~LyVaN  399 (462)
T 2ece_A          392 GRRVYVTN  399 (462)
T ss_dssp             SSEEEEEC
T ss_pred             CCEEEEEc
Confidence            77777777

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.05  E-value=7.6e-09  Score=113.49  Aligned_cols=301  Identities=11%  Similarity=0.049  Sum_probs=175.3

Q ss_pred             EEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe
Q 001310          446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1103)
Q Consensus       446 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  525 (1103)
                      +..+..++.   +..++.++.|..|| .+++.+.....+...+.++..  ..++ .+..++.+  +..+|. +++.....
T Consensus        24 ~~~~d~~g~---l~v~t~~~~l~~~d-~~g~~~~~~~~~~~~~~~~~~--~~~g-~l~v~t~~--l~~~d~-~g~~~~~~   93 (330)
T 3hxj_A           24 SPILAKNGT---IYLGSSNKNLYAIN-TDGSVKWFFKSGEIIECRPSI--GKDG-TIYFGSDK--VYAINP-DGTEKWRF   93 (330)
T ss_dssp             CCEECTTSC---EECSSTTTTTEEEC-TTSCEEESSCGGGEEEECCEE--TTTT-EECCSSCE--EEEECC-CGGGGGGS
T ss_pred             CceEccCCe---EEEEcCCCEEEEEC-CCCcEEEEEecCCCcccceEE--ecCC-cEEEecCc--EEEECC-CCcEEEEE
Confidence            445556676   67777889999999 888887665544444455544  3344 44444444  777775 33333322


Q ss_pred             cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEE
Q 001310          526 DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIW  605 (1103)
Q Consensus       526 ~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw  605 (1103)
                      ...........+.  +..+.+++.    ++.|+.+|.. ++.........   ..+.++...+++. ++.++.++.|..+
T Consensus        94 ~~~~~~~~~~~~~--~~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~---~~~~~~~~~~~g~-l~vgt~~~~l~~~  162 (330)
T 3hxj_A           94 DTKKAIVSDFTIF--EDILYVTSM----DGHLYAINTD-GTEKWRFKTKK---AIYATPIVSEDGT-IYVGSNDNYLYAI  162 (330)
T ss_dssp             CC-----CCEEEE--TTEEEEECT----TSEEEEECTT-SCEEEEEECSS---CCCSCCEECTTSC-EEEECTTSEEEEE
T ss_pred             ECCCCcccCceEE--CCEEEEEec----CCEEEEEcCC-CCEEEEEcCCC---ceeeeeEEcCCCE-EEEEcCCCEEEEE
Confidence            2222222223333  445555543    4459999988 77666655433   4455566666665 6677788999999


Q ss_pred             ECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccC
Q 001310          606 DMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIAN  685 (1103)
Q Consensus       606 d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~  685 (1103)
                      |.. ++.........  ..+.++...+++.+++. +  +.+..++ .+++.......                       
T Consensus       163 d~~-g~~~~~~~~~~--~~~~~~~~d~~g~l~v~-t--~~l~~~d-~~g~~~~~~~~-----------------------  212 (330)
T 3hxj_A          163 NPD-GTEKWRFKTND--AITSAASIGKDGTIYFG-S--DKVYAIN-PDGTEKWNFYA-----------------------  212 (330)
T ss_dssp             CTT-SCEEEEEECSS--CCCSCCEECTTCCEEEE-S--SSEEEEC-TTSCEEEEECC-----------------------
T ss_pred             CCC-CCEeEEEecCC--CceeeeEEcCCCEEEEE-e--CEEEEEC-CCCcEEEEEcc-----------------------
Confidence            998 77776665432  34566677677764443 3  5566666 33322111100                       


Q ss_pred             CceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCC
Q 001310          686 GSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPR  765 (1103)
Q Consensus       686 ~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~  765 (1103)
                                                                                                      
T Consensus       213 --------------------------------------------------------------------------------  212 (330)
T 3hxj_A          213 --------------------------------------------------------------------------------  212 (330)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             CccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCC
Q 001310          766 NDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPT  845 (1103)
Q Consensus       766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~  845 (1103)
                                                         ....+.+++..++|.+.+...++.+..+|. +++.+..+......
T Consensus       213 -----------------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~  256 (330)
T 3hxj_A          213 -----------------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRI  256 (330)
T ss_dssp             -----------------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCC
T ss_pred             -----------------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCc
Confidence                                               111233344455555544444555555553 34444444433333


Q ss_pred             eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCC
Q 001310          846 ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       846 i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~  917 (1103)
                      +.++.+.+ ++ .|.+++.+|.|..+|. +++.+..+......+.++...++|++. .++.+|.+++.....
T Consensus       257 ~~~~~~~~-~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~l~-~gt~~G~~~~~~~~~  324 (330)
T 3hxj_A          257 ESSPVIGN-TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGTIY-FGTRNGKFYALFNLE  324 (330)
T ss_dssp             CSCCEECT-TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCCEE-EECTTSCEEEEEC--
T ss_pred             cccceEcC-CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCEEE-EEcCCCeEEEEeccc
Confidence            44456655 45 5667888888999995 677777666555667778887787655 488899998887665

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=99.02  E-value=2.6e-08  Score=112.35  Aligned_cols=279  Identities=11%  Similarity=0.027  Sum_probs=175.3

Q ss_pred             EEEcc-----CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEE-c-CCCCEEEEEe----------
Q 001310          535 MAYSA-----NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF-D-TAKDQILAAG----------  597 (1103)
Q Consensus       535 ~~~s~-----dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~----------  597 (1103)
                      ...|.     ||++++.+..   .+..|.+.|+.+.+..+.+.-..  ......+++ + |+++++++++          
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~--g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg  164 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPN--AKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  164 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSS--CCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             cccCCCCCCcCCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCC--CCCCcceeeeecCCCcEEEEecccccccCCCC
Confidence            45555     8999998653   36679999999999888664332  245788887 5 9999999985          


Q ss_pred             --------CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceee
Q 001310          598 --------DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRK  669 (1103)
Q Consensus       598 --------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~  669 (1103)
                              .++.+.+.|.++.+...++...+.   ...++++|+|+++++.+.+...       +..+.....  .    
T Consensus       165 ~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~-------~~~i~~~~~--~----  228 (595)
T 1fwx_A          165 TNMEDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEK-------GMTLPEMTA--A----  228 (595)
T ss_dssp             SSTTCGGGEEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTC-------CSSHHHHTC--C----
T ss_pred             cccccccccCceEEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCccc-------Ccchhhccc--c----
Confidence                    345799999999999988876432   4678999999999998876421       000000000  0    


Q ss_pred             eEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEE
Q 001310          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1103)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  749 (1103)
                                                          .-..+.+.+....                     ..+.++|+..
T Consensus       229 ------------------------------------~~d~v~V~~~~~~---------------------~~~v~~Gk~~  251 (595)
T 1fwx_A          229 ------------------------------------EMDHIVVFNIAEI---------------------EKAIAAGDYQ  251 (595)
T ss_dssp             ------------------------------------SEEEEEEEEHHHH---------------------HHHHHHTCSE
T ss_pred             ------------------------------------ccceEEEeeccce---------------------eEeccCCCee
Confidence                                                0001111111100                     0011223222


Q ss_pred             EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCc-eeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEE
Q 001310          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ-FMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVIS  826 (1103)
Q Consensus       750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~  826 (1103)
                      ..    +.+.+.|....+                    +.. .....     -.....++.++|||+++++++  +++|.
T Consensus       252 ~i----~~V~VID~~~~~--------------------~~~~~~~Ip-----vg~~PhGv~~sPDGk~v~V~~~~s~~Vs  302 (595)
T 1fwx_A          252 EL----NGVKVVDGRKEA--------------------SSLFTRYIP-----IANNPHGCNMAPDKKHLCVAGKLSPTVT  302 (595)
T ss_dssp             EE----TTEEEEECSGGG--------------------CCSSEEEEE-----EESSCCCEEECTTSSEEEEECTTSSBEE
T ss_pred             EE----CcEEEEeCcccC--------------------CceeEEEEe-----cCCCceEEEEcCCCCEEEEeCCCCCeEE
Confidence            21    235555433210                    111 11111     123456899999999999987  58899


Q ss_pred             EEEcCCce------------eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC----------ceeEEEecc
Q 001310          827 LYIVMTFK------------TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS----------SEVISKLEG  884 (1103)
Q Consensus       827 iwd~~~~~------------~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~----------~~~~~~l~~  884 (1103)
                      ++|+.+.+            ...++. -......++|+| +|...++..-|++|.+||+.+          .+.+.++..
T Consensus       303 Vid~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV  380 (595)
T 1fwx_A          303 VLDVTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV  380 (595)
T ss_dssp             EEEGGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC
T ss_pred             EEECcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec
Confidence            99999763            223332 345678999999 776666777899999999987          456777766


Q ss_pred             CCCCE-----EEEEEccCCCEEEEEeC---CCe----------EEEEEcCCCceee
Q 001310          885 HSKRV-----TGLVFSDALNILVSSGG---DAQ----------IFVWDVDGWGIQT  922 (1103)
Q Consensus       885 h~~~V-----~~l~~s~dg~~l~s~s~---dg~----------I~iwd~~~~~~~~  922 (1103)
                      |-.+-     .++.++|||++|+++..   |+.          -.++|+++++...
T Consensus       381 ~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l  436 (595)
T 1fwx_A          381 HYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL  436 (595)
T ss_dssp             SSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred             ccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence            64421     12355899999998753   542          2889997766544

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=99.02  E-value=8.2e-09  Score=113.23  Aligned_cols=269  Identities=12%  Similarity=0.063  Sum_probs=173.6

Q ss_pred             eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC
Q 001310          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1103)
Q Consensus       338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d  417 (1103)
                      ....+..+|.  +..|+.++.|..|| .+++.+..                   ...+...+.++...++|...+ ++.+
T Consensus        23 ~~~~~d~~g~--l~v~t~~~~l~~~d-~~g~~~~~-------------------~~~~~~~~~~~~~~~~g~l~v-~t~~   79 (330)
T 3hxj_A           23 SSPILAKNGT--IYLGSSNKNLYAIN-TDGSVKWF-------------------FKSGEIIECRPSIGKDGTIYF-GSDK   79 (330)
T ss_dssp             CCCEECTTSC--EECSSTTTTTEEEC-TTSCEEES-------------------SCGGGEEEECCEETTTTEECC-SSCE
T ss_pred             cCceEccCCe--EEEEcCCCEEEEEC-CCCcEEEE-------------------EecCCCcccceEEecCCcEEE-ecCc
Confidence            4556667776  45677788999999 88876543                   111334567778877776444 4333


Q ss_pred             CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecC
Q 001310          418 HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKE  497 (1103)
Q Consensus       418 ~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~  497 (1103)
                        |..+|. +++.+...   ...........+. ++   .+..++.++.|..+|.. ++.......+...+.++..  .+
T Consensus        80 --l~~~d~-~g~~~~~~---~~~~~~~~~~~~~-~~---~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~--~~  146 (330)
T 3hxj_A           80 --VYAINP-DGTEKWRF---DTKKAIVSDFTIF-ED---ILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIV--SE  146 (330)
T ss_dssp             --EEEECC-CGGGGGGS---CC-----CCEEEE-TT---EEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEE--CT
T ss_pred             --EEEECC-CCcEEEEE---ECCCCcccCceEE-CC---EEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEE--cC
Confidence              888886 55443321   1222222333333 44   47778888999999988 8877776655555555554  32


Q ss_pred             CccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccccc
Q 001310          498 NIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ  577 (1103)
Q Consensus       498 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~  577 (1103)
                      ++ .+..++.++.|..+|.. ++...........+.++.+.+++...+..       +.|+.+| .+++....+....  
T Consensus       147 ~g-~l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t-------~~l~~~d-~~g~~~~~~~~~~--  214 (330)
T 3hxj_A          147 DG-TIYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS-------DKVYAIN-PDGTEKWNFYAGY--  214 (330)
T ss_dssp             TS-CEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES-------SSEEEEC-TTSCEEEEECCSS--
T ss_pred             CC-EEEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe-------CEEEEEC-CCCcEEEEEccCC--
Confidence            44 46677888999999988 66666666555566777787888765543       2299999 7777766655433  


Q ss_pred             CCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310          578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       578 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                       ..+.++...+++ .+..++.++.|..+|. +++.+..+.....  .+..+.+.+++ .|.+++.++.|..+|. +++.+
T Consensus       215 -~~~~~~~~~~~g-~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~--~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~  287 (330)
T 3hxj_A          215 -WTVTRPAISEDG-TIYVTSLDGHLYAINP-DGTEKWRFKTGKR--IESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK  287 (330)
T ss_dssp             -CCCSCCEECTTS-CEEEEETTTEEEEECT-TSCEEEEEECSSC--CCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred             -cceeceEECCCC-eEEEEcCCCeEEEECC-CCCEeEEeeCCCC--ccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence             567777888776 4666777888988884 5666666554322  24456666556 5667788888999985 56555


Q ss_pred             Eecc
Q 001310          658 DAAG  661 (1103)
Q Consensus       658 ~~~~  661 (1103)
                      ....
T Consensus       288 ~~~~  291 (330)
T 3hxj_A          288 WNFE  291 (330)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5443

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.97  E-value=1.9e-08  Score=113.43  Aligned_cols=190  Identities=10%  Similarity=0.049  Sum_probs=137.0

Q ss_pred             EEEec-----CCCEEEEEc--CCeEEEEEcCCceeeEEecCC-CCCeeEEEE-c-CCCCCEEEEEe--------------
Q 001310          808 FALSK-----NDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAF-N-PHDNNVIAIGM--------------  863 (1103)
Q Consensus       808 l~~s~-----d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~d~~~lasg~--------------  863 (1103)
                      .++|.     ||+++.+..  ++.|.+.|+.+.++...+.-+ ......+++ + | +++++++++              
T Consensus        90 ~~~s~t~g~~DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~  168 (595)
T 1fwx_A           90 VHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNME  168 (595)
T ss_dssp             EEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTT
T ss_pred             cccCCCCCCcCCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccc
Confidence            55555     899998876  477999999999988855433 246788888 5 8 788888774              


Q ss_pred             ----CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC-------------------------------
Q 001310          864 ----DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA-------------------------------  908 (1103)
Q Consensus       864 ----~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-------------------------------  908 (1103)
                          .++.+.+.|..+.+.+.++.--. .-..++++|||+++++.+.+.                               
T Consensus       169 ~~~~~~~~vtvID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~  247 (595)
T 1fwx_A          169 DVANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA  247 (595)
T ss_dssp             CGGGEEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred             cccccCceEEEEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence                34689999999999888876322 346688999999999988653                               


Q ss_pred             -------eEEEEEcCC--CceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCce---------
Q 001310          909 -------QIFVWDVDG--WGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELT---------  968 (1103)
Q Consensus       909 -------~I~iwd~~~--~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~---------  968 (1103)
                             .|.|.|..+  ++.. ...+...       ....++.|||||++++++  .+.+|.++|+++.+         
T Consensus       248 Gk~~~i~~V~VID~~~~~~~~~-~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~  319 (595)
T 1fwx_A          248 GDYQELNGVKVVDGRKEASSLF-TRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADP  319 (595)
T ss_dssp             TCSEEETTEEEEECSGGGCCSS-EEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCG
T ss_pred             CCeeEECcEEEEeCcccCCcee-EEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCc
Confidence                   255555554  2210 1112221       135679999999999986  67799999999763         


Q ss_pred             ---EEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          969 ---CLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       969 ---~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                         .+.....  ......++|++||...++.-.|+.|.+||+++
T Consensus       320 ~~~v~~~v~v--G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          320 RSAVVAEPEL--GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             GGGEEECCBC--CSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             ccceEEEcCC--CCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence               3333222  46788999999994445566899999999987

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.92  E-value=8e-10  Score=122.65  Aligned_cols=191  Identities=8%  Similarity=-0.023  Sum_probs=111.3

Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      ++..+++++.|+.|+.||..+|+.+.   .+..  +.+.+..+..++.  ++++++.|+.|+.||..+|+.+..+..+..
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W---~~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~   80 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKW---TLKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP   80 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEE---EEEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEE---EecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence            67899999999999999999998654   3333  4455555667776  677788999999999999998877654422


Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1103)
                      .......... ++..+++++.|+.++.||..+++....+..+.    ...++|++..+++++.    ++.|+.||..+|+
T Consensus        81 ~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG~  151 (369)
T 2hz6_A           81 ELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTRE  151 (369)
T ss_dssp             HHHTTCSCC------CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSSS
T ss_pred             cccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCCC
Confidence            1110010001 23477888899999999999988877665443    2345678888888765    6679999999998


Q ss_pred             eEEEEecccccCCceEEEEEcCCC---CEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310          567 IKRTYQGLQLQHNSVSVVHFDTAK---DQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                      .+..+....     .....+..+.   ..+++++.+|.|+.||..+|+.+.....
T Consensus       152 ~~W~~~~~~-----~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~  201 (369)
T 2hz6_A          152 LRWNATYFD-----YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY  201 (369)
T ss_dssp             CCCEEEEEE-----ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred             EEEeEeccc-----ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence            766654322     1122233332   5678889999999999999998877764

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=98.92  E-value=0.00034  Score=82.38  Aligned_cols=530  Identities=9%  Similarity=-0.013  Sum_probs=276.7

Q ss_pred             EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE-eCCCeEEEEEecC
Q 001310          349 LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHG  427 (1103)
Q Consensus       349 llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~-~~d~~i~iwd~~~  427 (1103)
                      |+++  ....|+..++++........                 + ..-..+..++|++++..|..+ ..++.|..+++.+
T Consensus         9 Ll~s--~~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g   68 (628)
T 4a0p_A            9 LLFS--RRADIRRISLETNNNNVAIP-----------------L-TGVKEASALDFDVTDNRIYWTDISLKTISRAFMNG   68 (628)
T ss_dssp             EEEE--ETTEEEEEESSCTTCEEECC-----------------C-CSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EEEE--eCCcEEEEECCCCCcceEEE-----------------c-CCCCceEEEEEECCCCEEEEEECCCCeEEEEECCC
Confidence            4444  34678888887654322100                 1 123467899999976666655 4568899998876


Q ss_pred             CCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE-E
Q 001310          428 GSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-S  506 (1103)
Q Consensus       428 ~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~  506 (1103)
                      .....   .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++.|. +|.+.++- +
T Consensus        69 ~~~~~---v~~~g~~~P~GlAvD~~~~~-LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~-~G~lY~tD~g  143 (628)
T 4a0p_A           69 SALEH---VVEFGLDYPEGMAVDWLGKN-LYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPA-EGFMYWTEWG  143 (628)
T ss_dssp             CSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETT-TTEEEEEECS
T ss_pred             CCcEE---EEeCCCCCcceEEEEeCCCE-EEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccC-CCeEEEeCCC
Confidence            53211   22222245678999877665 4455566788999997655433333344456788888654 33444443 2


Q ss_pred             CCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEE
Q 001310          507 VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF  586 (1103)
Q Consensus       507 ~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~  586 (1103)
                      ..+.|...+++......... .......++++++++.|+.+-.   +...|...|+..... ..+....   .....+++
T Consensus       144 ~~~~I~r~~~dG~~~~~l~~-~~~~P~GlalD~~~~~LY~aD~---~~~~I~~~d~dG~~~-~v~~~~l---~~P~glav  215 (628)
T 4a0p_A          144 GKPKIDRAAMDGSERTTLVP-NVGRANGLTIDYAKRRLYWTDL---DTNLIESSNMLGLNR-EVIADDL---PHPFGLTQ  215 (628)
T ss_dssp             SSCEEEEEETTSCSCEEEEC-SCSSEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECC---SCEEEEEE
T ss_pred             CCCEEEEEeCCCCceEEEEC-CCCCcceEEEccccCEEEEEEC---CCCEEEEEcCCCCce-EEeeccC---CCceEEEE
Confidence            35678888877655444333 4456789999999888887753   355799999875444 3333322   34567777


Q ss_pred             cCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE-EecCCCEEEEEECCCeEEEEEcCCCCeeEecccccc
Q 001310          587 DTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC-FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSD  665 (1103)
Q Consensus       587 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~-~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  665 (1103)
                      .. +..+++-...+.|...|..+++....+.....  ....+. +++..+.   + .           ..+.    ....
T Consensus       216 ~~-~~ly~tD~~~~~I~~~dk~tg~~~~~l~~~~~--~p~~i~v~~~~~q~---~-~-----------n~C~----~~ng  273 (628)
T 4a0p_A          216 YQ-DYIYWTDWSRRSIERANKTSGQNRTIIQGHLD--YVMDILVFHSSRQS---G-W-----------NECA----SSNG  273 (628)
T ss_dssp             ET-TEEEEEETTTTEEEEEETTTCCSCEEEECSCC--SCCEEEEECGGGSC---C-C-----------CTTT----TTGG
T ss_pred             EC-CEEEEecCCCCEEEEEECCCCCceEEEecCCC--Ccceeeeeeecccc---c-c-----------eEec----cCCC
Confidence            54 33334444578899999888776665543211  122332 2221110   0 0           0000    0000


Q ss_pred             ceeeeEEecC-CceeeeeccCCceEe-cCCC-CCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEE
Q 001310          666 NLRKLSVNPI-STVTGAGIANGSVSV-NEDP-KEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  742 (1103)
Q Consensus       666 ~i~~~~~~~~-~~~~~~~~~~~~~~~-~~~~-s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  742 (1103)
                      ....+++... +... ..+..+.... .+.. .+...+++.+. ...|+-..+.....   ....++. .....+.+++|
T Consensus       274 ~C~~~C~~~~~~~~~-C~C~~g~~l~~d~~~C~~~~~~Ll~s~-~~~i~~i~l~~~~~---~~~~l~~-~~~~~~~~ld~  347 (628)
T 4a0p_A          274 HCSHLCLAVPVGGFV-CGCPAHYSLNADNRTCSAPTTFLLFSQ-KSAINRMVIDEQQS---PDIILPI-HSLRNVRAIDY  347 (628)
T ss_dssp             GCSSEEEEETTTEEE-EECSTTCEECTTSSCEECCSSEEEEEE-TTEEEEECCCTTCC---CCEECCC-TTCSCEEEEEE
T ss_pred             CcchhhhcCCCCCee-EEcCCCcEecccCCcCccccceeeeec-cceEEEEecccccC---ceEEEEe-hhcCCceEEEE
Confidence            1111111111 1110 0111111000 0000 01112222222 23344333321111   0111111 12345778999


Q ss_pred             ecCCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc
Q 001310          743 NNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS  821 (1103)
Q Consensus       743 s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~  821 (1103)
                      .+....|+.+.. .+.|+.++.+....           ..         +.............+..+|+...++.|..+.
T Consensus       348 d~~~~~iy~sD~~~~~I~r~~~~g~~~-----------~~---------v~~~~~~~~~~~~~p~glAvD~~~~nLY~td  407 (628)
T 4a0p_A          348 DPLDKQLYWIDSRQNMIRKAQEDGSQG-----------FT---------VVVSSVPSQNLEIQPYDLSIDIYSRYIYWTC  407 (628)
T ss_dssp             ETTTTEEEEEETTTTEEEEEETTSCSC-----------EE---------EEC--------CCCEEEEEEETTTTEEEEEE
T ss_pred             ecCCCeEEEEecCcceEEEEEcCCCCc-----------eE---------EEEcccccccccCCcceEEeeccCCeEEEEc
Confidence            987766666544 46666655432110           00         0000000001234678999999877766554


Q ss_pred             --CCeEEEEEcCCceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeCCC--eEEEEEcCCceeEEEe-ccCCCCEEEEEEc
Q 001310          822 --GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMDDS--TILIYNARSSEVISKL-EGHSKRVTGLVFS  895 (1103)
Q Consensus       822 --dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~dg--~v~iwd~~~~~~~~~l-~~h~~~V~~l~~s  895 (1103)
                        .+.|.+.++. |+....+. ..-....++++.|..+.++.+-....  .|...++. |.....+ ...-.....|++.
T Consensus       408 ~~~~~I~v~~~~-G~~~~~l~~~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~d-G~~~~~l~~~~l~~P~gla~D  485 (628)
T 4a0p_A          408 EATNVINVTRLD-GRSVGVVLKGEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALD-GTEREVLFFSGLSKPIALALD  485 (628)
T ss_dssp             TTTTEEEEEETT-SCEEEEEEECTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETT-SCSCEEEECSSCSCEEEEEEE
T ss_pred             CCCCEEEEEECC-CCeEEEEEeCCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCC-CCCcEEEEeccCCCccEEEEe
Confidence              4789999986 44444433 34467899999995555555433332  56666665 4433333 3234467899999


Q ss_pred             cCCCEEEEEe-CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEEE
Q 001310          896 DALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCLK  971 (1103)
Q Consensus       896 ~dg~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~~  971 (1103)
                      ++++.|..+. ..+.|...+++.....   .+..  +..   ....++++.. + .|..+  ..+.|...|..+|+...
T Consensus       486 ~~~~~LYw~D~~~~~I~~~~~dG~~r~---~~~~--~~~---~~P~glav~~-~-~ly~tD~~~~~i~~~~k~~G~~~~  554 (628)
T 4a0p_A          486 SRLGKLFWADSDLRRIESSDLSGANRI---VLED--SNI---LQPVGLTVFE-N-WLYWIDKQQQMIEKIDMTGREGRT  554 (628)
T ss_dssp             TTTTEEEEEETTTTEEEEEETTSCSCE---EEEC--SSC---SCEEEEEEET-T-EEEEEETTTTEEEEEETTSSSCCE
T ss_pred             CCCCEEEEEeCCCCEEEEEeCCCCceE---EEEc--CCC---CCcEEEEEEC-C-EEEEEECCCCeEEEEECcCCCCcE
Confidence            9876666554 4678999999764321   1211  111   1345666644 3 33332  45567777766665443

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.92  E-value=8.4e-07  Score=106.36  Aligned_cols=193  Identities=13%  Similarity=0.142  Sum_probs=132.8

Q ss_pred             CCeEEEEEcCCceeeEEecCCC---C----------------------------CeeEEEEcCCCCCEEEEEeCCCe---
Q 001310          822 GGVISLYIVMTFKTILTIMPPS---P----------------------------TATSLAFNPHDNNVIAIGMDDST---  867 (1103)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~~---~----------------------------~i~~l~~s~~d~~~lasg~~dg~---  867 (1103)
                      ++.|..+|..+|+.+.++....   .                            ....++++| +..+++.++.++.   
T Consensus       177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~  255 (668)
T 1kv9_A          177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN  255 (668)
T ss_dssp             BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred             CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence            3789999999999988775311   0                            112478888 6678888887764   


Q ss_pred             ----------------EEEEEcCCceeEEEecc--CC-------CCEEEEEEccCCC---EEEEEeCCCeEEEEEcCCCc
Q 001310          868 ----------------ILIYNARSSEVISKLEG--HS-------KRVTGLVFSDALN---ILVSSGGDAQIFVWDVDGWG  919 (1103)
Q Consensus       868 ----------------v~iwd~~~~~~~~~l~~--h~-------~~V~~l~~s~dg~---~l~s~s~dg~I~iwd~~~~~  919 (1103)
                                      |..+|..+|+.+..+..  |.       .+.....+..+|+   .++.++.+|.++++|..+|+
T Consensus       256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~  335 (668)
T 1kv9_A          256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK  335 (668)
T ss_dssp             HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred             cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence                            99999999999887764  32       2333333344775   68889999999999999998


Q ss_pred             eeeeeeeec---------CCCcc--------c------CC-----CCceEEEEcCCCCEEEEE-----------------
Q 001310          920 IQTCRSLQT---------PDGVM--------T------LA-----PSETHIQFHKDQTRFLLV-----------------  954 (1103)
Q Consensus       920 ~~~~~~~~~---------~~~~~--------~------~~-----~~v~~l~fs~dg~~l~~~-----------------  954 (1103)
                      ......+..         ..+..        .      ..     ..-..++++|+..++.+.                 
T Consensus       336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~  415 (668)
T 1kv9_A          336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT  415 (668)
T ss_dssp             EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred             EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence            763211100         00000        0      00     001237888987776651                 


Q ss_pred             --------------------eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEE
Q 001310          955 --------------------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus       955 --------------------~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~ 1014 (1103)
                                          .++.|..||..+|+.+.+...  ..+.....+...+.++++++.|+.+++||..+|+.+.
T Consensus       416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhhe
Confidence                                127799999999999876443  2334444556678889999999999999999999998


Q ss_pred             eec
Q 001310         1015 RIL 1017 (1103)
Q Consensus      1015 ~~~ 1017 (1103)
                      ++.
T Consensus       494 ~~~  496 (668)
T 1kv9_A          494 QFE  496 (668)
T ss_dssp             EEE
T ss_pred             Eec
Confidence            887

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.87  E-value=7.6e-06  Score=86.07  Aligned_cols=256  Identities=11%  Similarity=0.024  Sum_probs=156.9

Q ss_pred             CCEEEEEeCCCeEEEEEecCCCcccc--ceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQ--QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~--~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  485 (1103)
                      |.+|..+.. +.|+.+++.+......  ...+......+..++|++++.. ++++....+.|.++|+..+.....+....
T Consensus         1 ~~~l~~~~~-~~I~~~~~~g~~~~~~~~~~~~~~~~~~~~gi~~d~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~   78 (267)
T 1npe_A            1 GTHLLFAQT-GKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (267)
T ss_dssp             CEEEEEEEE-EEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CcEEEEEcC-CeEEEEEecCcccccccceeeecCCCCcEEEEEEecCCCE-EEEEECCCCEEEEEecCCCCcEEEEECCC
Confidence            345555543 4789999876542110  1112222345789999997764 45556667899999987665443333333


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      .....+++.+. ++.+.++....+.|.+++++.................++++|++..|+.+.... ..+.|..+++...
T Consensus        79 ~~p~~ia~d~~-~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~-~~~~I~~~~~dg~  156 (267)
T 1npe_A           79 GSPEGIALDHL-GRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT  156 (267)
T ss_dssp             CCEEEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred             CCccEEEEEec-CCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCC-CCcEEEEEecCCC
Confidence            56788888543 334555656678999999876544333333334678999999877766654321 1356888887543


Q ss_pred             eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CC
Q 001310          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE  643 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d  643 (1103)
                      . ...+....  ......+++++++..|+.+. ..+.|.++|.........+...   .....++..  +..++++. ..
T Consensus       157 ~-~~~~~~~~--~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~---~~P~gi~~d--~~~lyva~~~~  228 (267)
T 1npe_A          157 N-RRILAQDN--LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT  228 (267)
T ss_dssp             C-CEEEECTT--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred             C-cEEEEECC--CCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCC---CCceEEEEe--CCEEEEEECCC
Confidence            2 23332111  24678999999877776654 5688999999765544443321   123456654  44555554 56


Q ss_pred             CeEEEEEcCCCCeeEeccccc-cceeeeEEecC
Q 001310          644 NRIKILETPESNSVDAAGVLS-DNLRKLSVNPI  675 (1103)
Q Consensus       644 g~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~  675 (1103)
                      +.|..++..+++.+..+.... .....+++.|+
T Consensus       229 ~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~  261 (267)
T 1npe_A          229 NSVIAMDLAISKEMDTFHPHKQTRLYGITIALS  261 (267)
T ss_dssp             TEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred             CeEEEEeCCCCCceEEEccccccccceeeecCc
Confidence            899999999888777665332 23455555543

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.86  E-value=9.2e-10  Score=122.15  Aligned_cols=189  Identities=9%  Similarity=0.061  Sum_probs=106.7

Q ss_pred             CCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCccc
Q 001310          855 DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMT  934 (1103)
Q Consensus       855 d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~  934 (1103)
                      ++..+++++.||.|+.||..+|+.+..+..  +.+.+..+.++++.+++++.|+.|+.||..+|+.............. 
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~-   84 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ-   84 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT-
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc-
Confidence            456889999999999999999999988876  55666666778888888889999999999888754322111100000 


Q ss_pred             CCCCceEEEEcCCCCEEEE-EeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310          935 LAPSETHIQFHKDQTRFLL-VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus       935 ~~~~v~~l~fs~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
                           .+..++.++ .+++ +.++.++.||..+|+.+..+.. +.    ...++|++..+++++.|+.|+.||..+|+.+
T Consensus        85 -----~sp~~~~~~-~v~~g~~dg~v~a~D~~tG~~~w~~~~-~~----~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~  153 (369)
T 2hz6_A           85 -----ASPCRSSDG-ILYMGKKQDIWYVIDLLTGEKQQTLSS-AF----ADSLSPSTSLLYLGRTEYTITMYDTKTRELR  153 (369)
T ss_dssp             -----TCSCC------CCCCEEEEEEEEECCC---------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred             -----cCceEecCC-EEEEEeCCCEEEEEECCCCcEEEEecC-CC----cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence                 011112344 4444 5789999999999999876432 22    2456778889999999999999999999877


Q ss_pred             EeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCC--CCcEEEEEecCCcEEEEccCCCCCCCcc
Q 001310         1014 CRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPL--KPTQFAVGLTNGEVYVIEPNEPGDTWAV 1080 (1103)
Q Consensus      1014 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~--~~~~l~~~~~dg~v~vw~~~~~~~~w~~ 1080 (1103)
                      .++....+..                       ...+++  ....+++++.||.|+.||....+..|..
T Consensus       154 W~~~~~~~~~-----------------------~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~  199 (369)
T 2hz6_A          154 WNATYFDYAA-----------------------SLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ  199 (369)
T ss_dssp             CEEEEEEECC-----------------------BCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred             EeEecccccC-----------------------ccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence            6654211100                       011111  0156777889999999999777777864

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.85  E-value=2.5e-06  Score=99.60  Aligned_cols=166  Identities=14%  Similarity=0.181  Sum_probs=107.8

Q ss_pred             EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCceeEEEecc--CC--------CCEEEEEEc-cCC--
Q 001310          848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DAL--  898 (1103)
Q Consensus       848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg--  898 (1103)
                      .+++.+ +..+++.+..+                +.|..+|..+|+.+..++.  |.        .++. +... .+|  
T Consensus       245 ~~a~d~-~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~  322 (599)
T 1w6s_A          245 WYAYDP-GTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKA  322 (599)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCE
T ss_pred             ceeEeC-CCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcE
Confidence            456667 55577777655                3899999999999877764  21        1121 2222 567  


Q ss_pred             -CEEEEEeCCCeEEEEEcCCCceeeeeeeec----------CCCccc----------------C-----CCCceEEEEcC
Q 001310          899 -NILVSSGGDAQIFVWDVDGWGIQTCRSLQT----------PDGVMT----------------L-----APSETHIQFHK  946 (1103)
Q Consensus       899 -~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~----------~~~~~~----------------~-----~~~v~~l~fs~  946 (1103)
                       +.++.++.+|.+.+.|..+|+......+..          ..+...                .     ...-..++|+|
T Consensus       323 ~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp  402 (599)
T 1w6s_A          323 RKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDP  402 (599)
T ss_dssp             EEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEET
T ss_pred             EEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCC
Confidence             567788999999999999998765332211          000000                0     00113567888


Q ss_pred             CCCEEEEE----------------------------------------eCCeEEEEECCCceEEEEeeCCCCcCeEEEEE
Q 001310          947 DQTRFLLV----------------------------------------HETHLAIYEAEELTCLKQWFPISSVPISQATF  986 (1103)
Q Consensus       947 dg~~l~~~----------------------------------------~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~f  986 (1103)
                      +..++.+.                                        ..+.|.-||+.+|+.+.+...+  .++.+-.+
T Consensus       403 ~~~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~  480 (599)
T 1w6s_A          403 KRELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTM  480 (599)
T ss_dssp             TTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCE
T ss_pred             CCCEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcce
Confidence            77766542                                        2357899999999988764322  22222223


Q ss_pred             ccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          987 SCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       987 s~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ...+..++.++.|+.++.||.++|+++.++.
T Consensus       481 ~tagg~vf~gt~dg~l~A~D~~tG~~lW~~~  511 (599)
T 1w6s_A          481 ATAGDLVFYGTLDGYLKARDSDTGDLLWKFK  511 (599)
T ss_dssp             EETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             EecCCEEEEECCCCeEEEEECCCCCEEEEee
Confidence            4456777789999999999999999998876

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.84  E-value=8e-06  Score=85.89  Aligned_cols=224  Identities=12%  Similarity=0.043  Sum_probs=143.6

Q ss_pred             ccEEEEEECCCCCEEEEEe-CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310          397 VSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  475 (1103)
                      ..+..++|++++..|..+. ..+.|.+++..++....   .+.........+++++++.. ++++....+.|.++++...
T Consensus        36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~  111 (267)
T 1npe_A           36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT  111 (267)
T ss_dssp             EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred             CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence            4678999999776666554 56789999998654211   22222346789999998664 4555566788999997654


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEEC--CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISV--DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      ...............+++++. ++.+.++...  .+.|..++++.................+++++++..|+.+..   +
T Consensus       112 ~~~~~~~~~~~~P~~i~vd~~-~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~---~  187 (267)
T 1npe_A          112 QRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---G  187 (267)
T ss_dssp             SCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---T
T ss_pred             CEEEEEECCCCCccEEEEeeC-CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---C
Confidence            332222222245678888653 2333344333  468888888754433333233346789999999888877653   2


Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      .+.|..+|.........+.+.    .....++..  +..++.+. ..+.|.++|..+++.+..+.... ......+++.|
T Consensus       188 ~~~I~~~~~~g~~~~~~~~~~----~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~  260 (267)
T 1npe_A          188 THRAECLNPAQPGRRKVLEGL----QYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIAL  260 (267)
T ss_dssp             TTEEEEEETTEEEEEEEEECC----CSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEEC
T ss_pred             CCEEEEEecCCCceEEEecCC----CCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecC
Confidence            557999998765443333321    234566654  45555554 56899999999999988886432 22357888888


Q ss_pred             CCC
Q 001310          633 NGT  635 (1103)
Q Consensus       633 ~g~  635 (1103)
                      ++.
T Consensus       261 ~~~  263 (267)
T 1npe_A          261 SQC  263 (267)
T ss_dssp             SCC
T ss_pred             ccC
Confidence            764

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.82  E-value=5.2e-06  Score=99.44  Aligned_cols=335  Identities=12%  Similarity=0.095  Sum_probs=181.7

Q ss_pred             cEEEEEECCCeEEEEEcCCCCeeEEecCCCcc----------E-EEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLG----------C-TRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       500 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~----------i-~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      ..++.++.++.|..+|..+++.+..+......          + ..+++  ++..+++++.    ++.|+.+|..+|+.+
T Consensus        67 g~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~~~  140 (668)
T 1kv9_A           67 GVIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL--WGDKVYVGTL----DGRLIALDAKTGKAI  140 (668)
T ss_dssp             TEEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE--EBTEEEEECT----TSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE--ECCEEEEEcC----CCEEEEEECCCCCEe
Confidence            36777778889999999988888776543221          0 11222  3456666653    567999999999998


Q ss_pred             EEEeccccc-CCceEE-EEEcCCCCEEEEEeC------CCcEEEEECCCCeeEEEEcCCCCC------------------
Q 001310          569 RTYQGLQLQ-HNSVSV-VHFDTAKDQILAAGD------DHVIKIWDMNKVQLLTTIDAGGGL------------------  622 (1103)
Q Consensus       569 ~~~~~~~~~-~~~v~~-~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~~~~~------------------  622 (1103)
                      -.+...... ...+.+ ...  .+..++++..      +|.|+.+|..+|+.+..+......                  
T Consensus       141 W~~~~~~~~~~~~~~~~P~v--~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~  218 (668)
T 1kv9_A          141 WSQQTTDPAKPYSITGAPRV--VKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQ  218 (668)
T ss_dssp             EEEECSCTTSSCBCCSCCEE--ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCC
T ss_pred             eeeccCCCCCcceecCCCEE--ECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCC
Confidence            777653200 011110 011  1345666543      589999999999999877532110                  


Q ss_pred             -----------CCCceEEEecCCCEEEEEECCCe-------------------EEEEEcCCCCeeEeccccccceeeeEE
Q 001310          623 -----------PENPRICFNKNGTLLAVIANENR-------------------IKILETPESNSVDAAGVLSDNLRKLSV  672 (1103)
Q Consensus       623 -----------~~v~~v~~s~~g~~l~~~~~dg~-------------------i~iw~~~~~~~~~~~~~~~~~i~~~~~  672 (1103)
                                 .....++++|+..++++++.++.                   |..+|..+++.+...+....       
T Consensus       219 g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~-------  291 (668)
T 1kv9_A          219 GDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPG-------  291 (668)
T ss_dssp             SSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTT-------
T ss_pred             ccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCC-------
Confidence                       01124788888888888877653                   55555555544433321100       


Q ss_pred             ecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc---EE
Q 001310          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ---AI  749 (1103)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~---~l  749 (1103)
                                                            ..|+..                ...+.....+..+|+   .+
T Consensus       292 --------------------------------------~~wd~~----------------~~~~~~~~d~~~~G~~~~~v  317 (668)
T 1kv9_A          292 --------------------------------------DSWDFT----------------ATQQITLAELNIDGKPRKVL  317 (668)
T ss_dssp             --------------------------------------CCSCCC----------------CCSCEEEEEEEETTEEEEEE
T ss_pred             --------------------------------------cccccc----------------CCCCcEEEEeccCCcEEEEE
Confidence                                                  011111                001111112223454   46


Q ss_pred             EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeecc----------CCCCCCCCCeeEEEEecCCCEEEE
Q 001310          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVND----------TTDSNSQEAVPCFALSKNDAYLFS  819 (1103)
Q Consensus       750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~v~~l~~s~d~~~l~~  819 (1103)
                      +.++.+|.+.++|..+.+...........-..-.+..++..+....          .+...-...-..++++|+..++.+
T Consensus       318 ~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv  397 (668)
T 1kv9_A          318 MQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYI  397 (668)
T ss_dssp             EECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEE
T ss_pred             EEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEE
Confidence            6777778888777665543210000000000001111222111000          000000011123677777665543


Q ss_pred             E------------------------------------c-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEE
Q 001310          820 A------------------------------------S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIG  862 (1103)
Q Consensus       820 ~------------------------------------~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg  862 (1103)
                      .                                    . +|.|..||..+++.+.+...+. ......+.. .+.+++++
T Consensus       398 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~-~~~~~~~~t-~gg~vf~g  475 (668)
T 1kv9_A          398 PYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQG  475 (668)
T ss_dssp             EEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEE
T ss_pred             eccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCC-CCcCceeEe-CCCEEEEE
Confidence            1                                    1 2779999999999987765432 222233333 45688889


Q ss_pred             eCCCeEEEEEcCCceeEEEeccCCCCE-EEEEEccCCC-EEEEEe
Q 001310          863 MDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSSG  905 (1103)
Q Consensus       863 ~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~l~s~s  905 (1103)
                      +.||.++.||..+|+.+..+....+.. .-+.+..+|+ +++.++
T Consensus       476 ~~dg~l~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~  520 (668)
T 1kv9_A          476 TAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMA  520 (668)
T ss_dssp             CTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEE
T ss_pred             CCcccchhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEe
Confidence            999999999999999998887543211 2244456776 444443

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.80  E-value=0.0015  Score=82.21  Aligned_cols=574  Identities=10%  Similarity=0.027  Sum_probs=281.0

Q ss_pred             ceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC----CCEEE
Q 001310          337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD----GSLLG  412 (1103)
Q Consensus       337 V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd----g~~la  412 (1103)
                      -+++++-.+|  +|+.||..|.=.+|.+.....-....+.+-|            --..-++|..++.-..    ...|+
T Consensus       329 ~ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~  394 (1158)
T 3ei3_A          329 AECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLV  394 (1158)
T ss_dssp             CSEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEE
T ss_pred             ccEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEE
Confidence            3566666666  5788888777777777643210000000000            0113367777766431    23555


Q ss_pred             EEe---CCCeEEEEEecCCCccccceEeccccccEEEEEEec---CCCceEEEEEcCCCceEEEeCCCCceeEEee--cC
Q 001310          413 VAY---SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFE--GH  484 (1103)
Q Consensus       413 s~~---~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~--~~  484 (1103)
                      +++   .+|.+++..-.-+-.......+.+ ...++.+....   ...  +|+....+.+ .|+.+. ++.+..+.  +.
T Consensus       395 ~~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~-~e~veev~~~gf  469 (1158)
T 3ei3_A          395 TCSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLN-GEEVEETELMGF  469 (1158)
T ss_dssp             EEECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEE-TTEEEEECCTTC
T ss_pred             EEECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEe-CCcccccccccc
Confidence            543   457788775433221111112332 24566665432   233  5555555555 455442 22232221  11


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC-ccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-LGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      ......++...-+++ .++=.. ...|++.+.........+.... ..|...+.+  +.+++.+. +    +.+..+++.
T Consensus       470 ~~~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g----~~l~~fel~  540 (1158)
T 3ei3_A          470 VDDQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-G----RALYYLQIH  540 (1158)
T ss_dssp             CSSSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-T----TEEEEEEEE
T ss_pred             cCCCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-C----CEEEEEEee
Confidence            111112221111111 222222 2345666665544554555433 356555544  34555553 1    236667766


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCC------CCEEEEEeC-CCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe--cCC
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTA------KDQILAAGD-DHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN--KNG  634 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s--~~g  634 (1103)
                      .++....... . -...|.|+++.+.      .++++.|.. |++++|+++.+.+.+........ ....++.+.  ...
T Consensus       541 ~~~L~~~~~~-~-l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~  617 (1158)
T 3ei3_A          541 PQELRQISHT-E-MEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESS  617 (1158)
T ss_dssp             TTEEEEEEEE-E-CSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTE
T ss_pred             CCceeeeccc-C-CCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCC
Confidence            6543322111 1 1367999998764      368888886 99999999998777655544321 123344333  234


Q ss_pred             CEEEEEECCCeEEEEEcC--CCCeeEec--cccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccc
Q 001310          635 TLLAVIANENRIKILETP--ESNSVDAA--GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKS  710 (1103)
Q Consensus       635 ~~l~~~~~dg~i~iw~~~--~~~~~~~~--~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i  710 (1103)
                      .+|.+|-.||.+.-+.+.  ++......  .-...++.-..+...+.         ...|.   ..+..+++..+ .+.+
T Consensus       618 ~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG~~pv~L~~~~~~~~---------~~V~a---~s~rp~liy~~-~~~l  684 (1158)
T 3ei3_A          618 HYLLCALGDGALFYFGLNIETGLLSDRKKVTLGTQPTVLRTFRSLST---------TNVFA---CSDRPTVIYSS-NHKL  684 (1158)
T ss_dssp             EEEEEEETTSEEEEEEECTTTCCEEEEEEEECCSSCCEEEEEESSSC---------EEEEE---ESSSCEEEEES-SSSE
T ss_pred             cEEEEEeCCCeEEEEEEcCCCCccccceeEEcCCCceEEEEEeeCCc---------eeEEE---ECCCCEEEEEc-CCce
Confidence            578899999988766554  33332221  11111221111111000         00000   00111111111 1111


Q ss_pred             ccccccccCCccceeeeccCccccccE-EEEEEecC--CcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCC
Q 001310          711 EVEKPLFARPSECQSLLLPSKVKANKI-SRLTYNNG--GQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRH  787 (1103)
Q Consensus       711 ~~w~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~s~~--g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~  787 (1103)
                      .+-.+.                 ...+ ....|+..  ..-++..+ ++.++|..++....              |+   
T Consensus       685 ~~s~l~-----------------~~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~--------------~~---  729 (1158)
T 3ei3_A          685 VFSNVN-----------------LKEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK--------------LH---  729 (1158)
T ss_dssp             EEEEBS-----------------SSCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS--------------EE---
T ss_pred             EEeccC-----------------hHHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC--------------ee---
Confidence            110000                 0111 12223221  12244333 34577766543210              10   


Q ss_pred             CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc----------------------------------------------
Q 001310          788 GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS----------------------------------------------  821 (1103)
Q Consensus       788 ~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~----------------------------------------------  821 (1103)
                         .....     -...+..++++|+.+.++.+.                                              
T Consensus       730 ---~~~ip-----L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  801 (1158)
T 3ei3_A          730 ---IRTVP-----LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFG  801 (1158)
T ss_dssp             ---EEEEE-----CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CC
T ss_pred             ---EEEEe-----CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcC
Confidence               11111     223445555555544333221                                              


Q ss_pred             ----CCeEEEEEcCCceeeEEecCCC-CCeeEEE---EcCCCCCEEEEEe----------CCCeEEEEEcCCceeEEEec
Q 001310          822 ----GGVISLYIVMTFKTILTIMPPS-PTATSLA---FNPHDNNVIAIGM----------DDSTILIYNARSSEVISKLE  883 (1103)
Q Consensus       822 ----dg~i~iwd~~~~~~~~~~~~~~-~~i~~l~---~s~~d~~~lasg~----------~dg~v~iwd~~~~~~~~~l~  883 (1103)
                          .+.|++.|..+++.+..+.-.. ..+.+++   |..+...++++|+          ..|.|.+|++..++.....+
T Consensus       802 ~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~  881 (1158)
T 3ei3_A          802 EEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE  881 (1158)
T ss_dssp             CEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE
T ss_pred             CceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE
Confidence                1347788888888776655333 3445544   4432357899886          35899999997554322211


Q ss_pred             -cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEe--CC-eE
Q 001310          884 -GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH--ET-HL  959 (1103)
Q Consensus       884 -~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~--d~-~v  959 (1103)
                       ...++|++++-- +|++||..  ...|++|++...+.....+ ...    .   .+..+.....++++++|.  ++ .+
T Consensus       882 ~~v~g~v~al~~~-~g~Lla~i--g~~l~vy~l~~~~~L~~~~-~~~----~---~i~~~~l~~~~~~I~vgD~~~Sv~~  950 (1158)
T 3ei3_A          882 KEVKGAVYSMVEF-NGKLLASI--NSTVRLYEWTTEKELRTEC-NHY----N---NIMALYLKTKGDFILVGDLMRSVLL  950 (1158)
T ss_dssp             EEESSCEEEEEEE-TTEEEEEE--TTEEEEEEECTTSCEEEEE-EEC----C---CSCEEEEEEETTEEEEEESSBCEEE
T ss_pred             EEcCCcCEEEeee-CCEEEEEc--CCEEEEEECCCCceEEEEe-ecc----c---cEEEEEEeccCCEEEEEEhhheEEE
Confidence             246789888643 45555443  4779999998754222111 111    1   233344444677888872  33 34


Q ss_pred             EEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          960 AIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       960 ~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      .-|+...++....-...+...++++.|-.++ .++.+..+|.+.+.....
T Consensus       951 ~~y~~~~~~L~~~a~D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          951 LAYKPMEGNFEEIARDFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             EEEETTTTEEEEEEECCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred             EEEEcCCCeEEEEEeecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence            4577666665544344457889999998765 566688999999987764

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.80  E-value=9.3e-07  Score=90.56  Aligned_cols=200  Identities=12%  Similarity=0.076  Sum_probs=139.6

Q ss_pred             CeeEEEEecCCCEEEEEc---CCeEEEEEcCCceeeEEecCCCC-CeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001310          804 AVPCFALSKNDAYLFSAS---GGVISLYIVMTFKTILTIMPPSP-TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~---dg~i~iwd~~~~~~~~~~~~~~~-~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1103)
                      ....++|++|+.++++.+   ++.|.++|..+++.+.++..... ....+++.  ++++.++...++.+.++|..+.+.+
T Consensus        22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~   99 (266)
T 2iwa_A           22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI   99 (266)
T ss_dssp             CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred             CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence            457899999886666654   47899999999999988763322 33456665  3456666667899999999999999


Q ss_pred             EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCe
Q 001310          880 SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETH  958 (1103)
Q Consensus       880 ~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~  958 (1103)
                      .++..-...  ...+++||+.|+++..++.|.++|..+.+......+.......   ..+..+.|. +|+..+.. .++.
T Consensus       100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~---~~~nele~~-dg~lyvn~~~~~~  173 (266)
T 2iwa_A          100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRV---IRLNELEYI-NGEVWANIWQTDC  173 (266)
T ss_dssp             EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTSSE
T ss_pred             EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCccc---ccceeEEEE-CCEEEEecCCCCe
Confidence            888632111  2446678887777777899999999987755533322211111   135678888 77555444 5789


Q ss_pred             EEEEECCCceEEEEeeCCC------------CcCeEEEEEccCCCEE-EEEecCCcEEEEeCCCce
Q 001310          959 LAIYEAEELTCLKQWFPIS------------SVPISQATFSCDCRMV-FTSFVDGTLSIHEASNLE 1011 (1103)
Q Consensus       959 v~iwd~~~~~~~~~~~~~h------------~~~v~~l~fs~dg~~l-~t~~~dg~v~vWd~~~~~ 1011 (1103)
                      |.+.|.++++.+..+..+.            ......++|+|+++.| +|+.....+.+-++.+..
T Consensus       174 V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~~  239 (266)
T 2iwa_A          174 IARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLVR  239 (266)
T ss_dssp             EEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEECC
T ss_pred             EEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEeccc
Confidence            9999999999988764320            1355899999998755 555577888888876543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=98.79  E-value=0.00083  Score=79.03  Aligned_cols=500  Identities=9%  Similarity=-0.043  Sum_probs=254.1

Q ss_pred             CccEEEEEECCCCCEEEEEe-CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          396 GVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      -..+..++|++.+..|..+. ..+.|..+++.+.....  ..+.........+++.+.+.. +.++-...+.|.+.++..
T Consensus        39 ~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~--~v~~~~~~~P~GlAvD~~~~~-ly~~d~~~~~I~v~~~dG  115 (619)
T 3s94_A           39 LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ--NVVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDG  115 (619)
T ss_dssp             CSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE--EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTS
T ss_pred             CCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE--EEEeCCCCCcCeEEEEecCCE-EEEEeCCCCEEEEEECCC
Confidence            34678999999777776654 45788889887653111  123333356889999997664 455566778999999765


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEE-ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG  553 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~  553 (1103)
                      ......+...-.....+++.+. ++.++++- +..+.|...+++.................+++++++..|+.+-.   .
T Consensus       116 ~~~~~l~~~~l~~P~~Iavdp~-~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~---~  191 (619)
T 3s94_A          116 SLRKVLFWQELDQPRAIALDPS-SGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---K  191 (619)
T ss_dssp             CSCEEEECSSCSCCCCEEEETT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEET---T
T ss_pred             CCEEEEEeCCCCCCceEEEecC-CCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeC---C
Confidence            4433333344455677888654 33344443 22466777777655444444444556789999998888877743   2


Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEe-
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFN-  631 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s-  631 (1103)
                      ...|...|+..........+..   .....+++..+  .++.+ ...+.|...|..+++....+....  .....+.+. 
T Consensus       192 ~~~I~~~~~dG~~~~~~~~~~~---~~P~gi~~~~~--~ly~td~~~~~V~~~d~~tg~~~~~i~~~~--~~p~~i~v~~  264 (619)
T 3s94_A          192 LNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFED--ILYWTDWSTHSILACNKYTGEGLREIHSDI--FSPMDIHAFS  264 (619)
T ss_dssp             TCCEEEESSSCCEEC------------CCCEEESSS--EEEEECTTTCSEEEEESSSCCCCEECCSCC--CCCSEEEECC
T ss_pred             CCeEEEecCCCCccEEEEeCCC---CCceEEEEeCC--EEEEecCCCCEEEEEECCCCcccEEEecCC--CCCcEEEEEc
Confidence            5568999886544333322222   23346666554  45444 467789999988887665554321  112333332 


Q ss_pred             cCCCEEEEEECCCeEEEEEcCCC--CeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001310          632 KNGTLLAVIANENRIKILETPES--NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1103)
Q Consensus       632 ~~g~~l~~~~~dg~i~iw~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1103)
                      |..+-.  +.....     ...+  ..+..........  .+..|.+..+...   +....    .....+|+.+ ..+.
T Consensus       265 ~~~qp~--~~n~C~-----~~ng~Cs~lCl~~~~~~~~--~C~C~~g~~l~~d---~~~C~----~~~~~~Ll~~-~~~~  327 (619)
T 3s94_A          265 QQRQPN--ATNPCG-----IDNGGCSHLCLMSPVKPFY--QCACPTGVKLLEN---GKTCK----DGATELLLLA-RRTD  327 (619)
T ss_dssp             GGGSCC--CCCTTT-----TTGGGCSSEEEECSSTTSE--EEECCTTCCBCTT---SSCBC----SSCSEEEEEE-ESSC
T ss_pred             cccCCC--cccccc-----CCCCcccceEECCCCCCCc--eEeCCchheeccc---CcccC----CCCceEEEEE-cccc
Confidence            211000  000000     0000  0000000000000  0111211111000   00000    0011122222 2345


Q ss_pred             cccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEee-cCceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALA-SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1103)
Q Consensus       710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~-~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1103)
                      |+..++......   .+.++. .....+.+++|.+.+..|+.+. ..+.|..++......                    
T Consensus       328 i~~i~l~~~~~~---~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~--------------------  383 (619)
T 3s94_A          328 LRRISLDTPDFT---DIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS--------------------  383 (619)
T ss_dssp             EEEEESSSTTCC---CEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--------------------
T ss_pred             eEEEecCCCccc---eeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc--------------------
Confidence            555554432211   111121 1234567899998666565554 456676665432110                    


Q ss_pred             CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeC-
Q 001310          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-  864 (1103)
Q Consensus       789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-  864 (1103)
                        .....    ........+++...+..|..+.  .+.|.+.++.... ...+. ..-.....+++.|..|.+..+-.. 
T Consensus       384 --~~v~~----~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~-~~~l~~~~l~~P~~iavdp~~G~ly~tD~g~  456 (619)
T 3s94_A          384 --QFVVT----AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTM-RKILISEDLEEPRAIVLDPMVGYMYWTDWGE  456 (619)
T ss_dssp             --EEEEC----SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEECTTCCSEEEEEEETTTTEEEEEECSS
T ss_pred             --EEEEE----CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCe-EEEEEECCCCCeeeEEEEcCCCcEEEecCCC
Confidence              00000    1224566899997666565554  4789999987443 33333 334578999999944544444322 


Q ss_pred             CCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEe-CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEE
Q 001310          865 DSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG-GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       865 dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s-~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~  943 (1103)
                      .+.|...++............-.....|++++++..|..+. ..+.|...+++......  .+...-.      ...+++
T Consensus       457 ~~~I~r~~~dG~~~~~l~~~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~--~~~~~l~------~P~gla  528 (619)
T 3s94_A          457 IPKIERAALDGSDRVVLVNTSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRV--LVEDKIP------HIFGFT  528 (619)
T ss_dssp             SCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE--EEECCCC------SSCCEE
T ss_pred             CCEEEEEccCCCccEEEEeCCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEE--EeccCCC------CcEEEE
Confidence            35777777663322222233345678999998766666554 45789899987644222  1111111      233455


Q ss_pred             EcCCCCEEEEE--eCCeEEEEECCCc
Q 001310          944 FHKDQTRFLLV--HETHLAIYEAEEL  967 (1103)
Q Consensus       944 fs~dg~~l~~~--~d~~v~iwd~~~~  967 (1103)
                      +..+  +|..+  ..+.|...|..+|
T Consensus       529 v~~~--~ly~tD~~~~~I~~~~k~~g  552 (619)
T 3s94_A          529 LLGD--YVYWTDWQRRSIERVHKRSA  552 (619)
T ss_dssp             EETT--EEEEECTTSSCEEEEESSSC
T ss_pred             EECC--EEEEeecCCCeEEEEEcCCC
Confidence            5433  44443  4455666666655

>3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ...

Probab=98.78  E-value=0.0017  Score=81.88  Aligned_cols=568  Identities=10%  Similarity=0.067  Sum_probs=276.3

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCc-----cccceEeccccccEEEEEEecCC----CceEEEEE--cCCCceE
Q 001310          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD-----ARQQLEIDAHVGNVNDLAFSAPC----KQISVITC--GDDKTIK  468 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~-----~~~~~~l~~h~~~v~~~~~s~d~----~~~~l~s~--~~d~~i~  468 (1103)
                      .++++-.+| +|..|+..|.=.+|.+.....     +.....+ ..-++|.+++.....    .+ +++++  +.+|.++
T Consensus       330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~-i~~~sG~g~~gsL~  406 (1158)
T 3ei3_A          330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQ-LVTCSGAFKEGSLR  406 (1158)
T ss_dssp             SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCE-EEEEECCGGGCEEE
T ss_pred             cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCe-EEEEECcCCCCeEE
Confidence            567776555 778888777667777764321     1111122 244688888875421    23 33333  2567888


Q ss_pred             EEeCCCC-ceeEEeec-CCCceEEEEeee-cCCccEEEEEECCCeEEEEEcCCCCeeEEecCC-----CccEEEEEEccC
Q 001310          469 VWDAVTG-SRTYSFEG-HGAPVYSLCPHA-KENIHFIFSISVDGKIKAWLYDSLGARVDYDAP-----GLGCTRMAYSAN  540 (1103)
Q Consensus       469 iwd~~~~-~~~~~~~~-~~~~v~~~~~~~-~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~-----~~~i~~~~~s~d  540 (1103)
                      +..-.-+ +.+..+.- .-..++.+.... +....+|+....+.+ +++.+... ........     ...+.+-.+ .+
T Consensus       407 ~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~~  483 (1158)
T 3ei3_A          407 IIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-AH  483 (1158)
T ss_dssp             EEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-TT
T ss_pred             EEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-CC
Confidence            8742211 11122211 123444443221 123457777666666 45544321 22222111     111111111 22


Q ss_pred             CCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEE--EEcC
Q 001310          541 GRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLT--TIDA  618 (1103)
Q Consensus       541 g~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~  618 (1103)
                      + .++=...     ..|++.+...+..+..+....  ...|...+.+.  .+++.++ .+.+.++.+..++...  ....
T Consensus       484 ~-~ivQVt~-----~~Irli~~~~~~~~~~w~~p~--~~~I~~As~n~--~~vvva~-g~~l~~fel~~~~L~~~~~~~l  552 (1158)
T 3ei3_A          484 Q-QLIQITS-----ASVRLVSQEPKALVSEWKEPQ--AKNISVASCNS--SQVVVAV-GRALYYLQIHPQELRQISHTEM  552 (1158)
T ss_dssp             T-EEEEEES-----SCEEEEESSSCCEEEEECCTT--CCCCCEEEECS--SEEEEEE-TTEEEEEEEETTEEEEEEEEEC
T ss_pred             C-eEEEEec-----CEEEEEECCCCeEEEEEECCC--CCEEEEEEeCC--CEEEEEE-CCEEEEEEeeCCceeeecccCC
Confidence            2 3333332     227777776665666665443  24566666543  4666665 6788888877664332  2222


Q ss_pred             CCCCCCCceEEEecC------CCEEEEEEC-CCeEEEEEcCCCCeeEeccccc-cceeeeEEecCCceeeeeccCCceEe
Q 001310          619 GGGLPENPRICFNKN------GTLLAVIAN-ENRIKILETPESNSVDAAGVLS-DNLRKLSVNPISTVTGAGIANGSVSV  690 (1103)
Q Consensus       619 ~~~~~~v~~v~~s~~------g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~  690 (1103)
                      .   ..|.|+++.|.      ++++++|.. |++++|+++++.+.+....-.. ....++.+..               +
T Consensus       553 ~---~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~---------------~  614 (1158)
T 3ei3_A          553 E---HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTT---------------F  614 (1158)
T ss_dssp             S---SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEE---------------E
T ss_pred             C---CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEE---------------e
Confidence            2   35888888763      479999996 9999999998765553222111 1122222211               0


Q ss_pred             cCCCCCCCccceeeccccccccccccc--cCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcc
Q 001310          691 NEDPKEDVKPEISVEAENKSEVEKPLF--ARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDL  768 (1103)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~  768 (1103)
                           ....++..|-.||.+..+.++.  +.........+    ...++.-..+...|..-+.+..+.-..++.-..   
T Consensus       615 -----~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~L----G~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~~---  682 (1158)
T 3ei3_A          615 -----ESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTL----GTQPTVLRTFRSLSTTNVFACSDRPTVIYSSNH---  682 (1158)
T ss_dssp             -----TTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEEC----CSSCCEEEEEESSSCEEEEEESSSCEEEEESSS---
T ss_pred             -----CCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEc----CCCceEEEEEeeCCceeEEEECCCCEEEEEcCC---
Confidence                 1123445555555543333321  11111111111    122333333333333222222232222222110   


Q ss_pred             ccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeE-EEEecC--CCEEEEEcCCeEEEEEcCCcee--eEEecCCC
Q 001310          769 TLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC-FALSKN--DAYLFSASGGVISLYIVMTFKT--ILTIMPPS  843 (1103)
Q Consensus       769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-l~~s~d--~~~l~~~~dg~i~iwd~~~~~~--~~~~~~~~  843 (1103)
                                          . +....+    ....+.. ..|+..  ..-++..+++.++|..+.+...  ++++. -.
T Consensus       683 --------------------~-l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ip-L~  736 (1158)
T 3ei3_A          683 --------------------K-LVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVP-LY  736 (1158)
T ss_dssp             --------------------S-EEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEE-CS
T ss_pred             --------------------c-eEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEe-CC
Confidence                                0 000011    1112222 223321  2345555566677777653322  22222 23


Q ss_pred             CCeeEEEEcCCCCCEEEEEeC-------------------------------------------------CCeEEEEEcC
Q 001310          844 PTATSLAFNPHDNNVIAIGMD-------------------------------------------------DSTILIYNAR  874 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~-------------------------------------------------dg~v~iwd~~  874 (1103)
                      ..+..++++| ..+.++.+..                                                 -+.|++.|-.
T Consensus       737 ~Tprri~y~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~  815 (1158)
T 3ei3_A          737 ESPRKICYQE-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQH  815 (1158)
T ss_dssp             SEEEEEEEEG-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETT
T ss_pred             CCceEEEEcC-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCC
Confidence            4667777877 4544443321                                                 1246777777


Q ss_pred             CceeEEEecc-CCCCEEEEE---EccC-CCEEEEEe----------CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCc
Q 001310          875 SSEVISKLEG-HSKRVTGLV---FSDA-LNILVSSG----------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE  939 (1103)
Q Consensus       875 ~~~~~~~l~~-h~~~V~~l~---~s~d-g~~l~s~s----------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  939 (1103)
                      +.+.+..++- ....+.+++   |..+ ..+++.|.          ..|.|.++++..++...... ...+      +++
T Consensus       816 t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v~------g~v  888 (1158)
T 3ei3_A          816 TFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEVK------GAV  888 (1158)
T ss_dssp             TCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEES------SCE
T ss_pred             CCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEcC------CcC
Confidence            7776655432 223344444   3333 47888776          34789999998544322111 1112      357


Q ss_pred             eEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC--CCceeEEeec
Q 001310          940 THIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA--SNLEVQCRIL 1017 (1103)
Q Consensus       940 ~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~--~~~~~~~~~~ 1017 (1103)
                      ++++-- +| +|+++-.++|++|++...+.+.. ...+-..|..+.....+.++++|..-..|.+...  ..+++...-.
T Consensus       889 ~al~~~-~g-~Lla~ig~~l~vy~l~~~~~L~~-~~~~~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~  965 (1158)
T 3ei3_A          889 YSMVEF-NG-KLLASINSTVRLYEWTTEKELRT-ECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR  965 (1158)
T ss_dssp             EEEEEE-TT-EEEEEETTEEEEEEECTTSCEEE-EEEECCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE
T ss_pred             EEEeee-CC-EEEEEcCCEEEEEECCCCceEEE-EeeccccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe
Confidence            776633 23 77788889999999986653331 1111112333333345678888876666666543  3433331111


Q ss_pred             cccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310         1018 STAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus      1018 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
                        ++.+                  .+..++.+--  ...++.+..+|.+.+.+...
T Consensus       966 --D~~~------------------~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~  999 (1158)
T 3ei3_A          966 --DFNP------------------NWMSAVEILD--DDNFLGAENAFNLFVCQKDS  999 (1158)
T ss_dssp             --CCSC------------------BCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred             --eccc------------------ccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence              2222                  2223344432  35788899999999998743

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.77  E-value=4.6e-06  Score=97.65  Aligned_cols=166  Identities=9%  Similarity=0.068  Sum_probs=108.4

Q ss_pred             EEEEcCCCCCEEEEEeCC----------------CeEEEEEcCCceeEEEecc--CC--------CCEEEEEEccCCC--
Q 001310          848 SLAFNPHDNNVIAIGMDD----------------STILIYNARSSEVISKLEG--HS--------KRVTGLVFSDALN--  899 (1103)
Q Consensus       848 ~l~~s~~d~~~lasg~~d----------------g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s~dg~--  899 (1103)
                      .+++.+ +...++.+..+                +.|..+|..+|+.+..++.  |.        .++. +....+|+  
T Consensus       239 ~~a~d~-~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~  316 (571)
T 2ad6_A          239 WYAYDP-KLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMT  316 (571)
T ss_dssp             CCEEET-TTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEE
T ss_pred             eEEEcC-CCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEE
Confidence            356777 44566655532                3699999999998877753  21        2221 22334774  


Q ss_pred             -EEEEEeCCCeEEEEEcCCCceeeeeeeec-C---------CCcc----------------cCC-----CCceEEEEcCC
Q 001310          900 -ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P---------DGVM----------------TLA-----PSETHIQFHKD  947 (1103)
Q Consensus       900 -~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~---------~~~~----------------~~~-----~~v~~l~fs~d  947 (1103)
                       .++.++.+|.+.+.|..+|+......+.. .         .+..                ...     ..-..++|+|+
T Consensus       317 ~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~  396 (571)
T 2ad6_A          317 PLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE  396 (571)
T ss_dssp             EEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred             EEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCC
Confidence             67788899999999999998654332211 0         0000                000     00135789998


Q ss_pred             CCEEEEE-e-------------------------------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccC
Q 001310          948 QTRFLLV-H-------------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCD  989 (1103)
Q Consensus       948 g~~l~~~-~-------------------------------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~d  989 (1103)
                      ..++.+. .                                     ++.|..||..+|+.+.+...+  ..+.+..+...
T Consensus       397 ~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~--~~~~~~~~~t~  474 (571)
T 2ad6_A          397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTK  474 (571)
T ss_dssp             TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEET
T ss_pred             CCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC--CCccceeEEEC
Confidence            8887763 2                                     368999999999988764432  23333334445


Q ss_pred             CCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          990 CRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       990 g~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      +..+++++.||.|+.||..+|+.+.++.
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~  502 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFK  502 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEe
Confidence            6677778999999999999999998877

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.74  E-value=3e-06  Score=86.83  Aligned_cols=220  Identities=9%  Similarity=-0.006  Sum_probs=145.7

Q ss_pred             ceeeEEecCCCC--CeeEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeEEEeccCC-CCEEEEEEccCCCEEEEEeCC
Q 001310          833 FKTILTIMPPSP--TATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVISKLEGHS-KRVTGLVFSDALNILVSSGGD  907 (1103)
Q Consensus       833 ~~~~~~~~~~~~--~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~~~l~~h~-~~V~~l~~s~dg~~l~s~s~d  907 (1103)
                      .+.+.++. |..  ....++|++ ++.+.++.+.  ++.|.++|+.+++.+..+.-.. .....+++.. +++.++.-.+
T Consensus         9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~   85 (266)
T 2iwa_A            9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK   85 (266)
T ss_dssp             EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred             ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence            45566664 332  468999999 6655554443  5799999999999888765211 1233455552 2444445568


Q ss_pred             CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCC-C---cCeE
Q 001310          908 AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPIS-S---VPIS  982 (1103)
Q Consensus       908 g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h-~---~~v~  982 (1103)
                      +.+.++|..+.+....  +....+        ....+++||+.+.++ .+++|.++|.++.+.+..+..+. .   ..+.
T Consensus        86 ~~v~viD~~t~~v~~~--i~~g~~--------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~n  155 (266)
T 2iwa_A           86 NIGFIYDRRTLSNIKN--FTHQMK--------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLN  155 (266)
T ss_dssp             SEEEEEETTTTEEEEE--EECCSS--------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEE
T ss_pred             CEEEEEECCCCcEEEE--EECCCC--------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccce
Confidence            8999999998775542  222111        124466788887775 56789999999988887765432 1   2367


Q ss_pred             EEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEec
Q 001310          983 QATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLT 1062 (1103)
Q Consensus       983 ~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~ 1062 (1103)
                      .+.|. ||+..+....++.|.+-|..+++.+.++......+....        ..+.....+..++++|+...+++++..
T Consensus       156 ele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~--------~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          156 ELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLID--------EGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             EEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHH--------TTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             eEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCccccccc--------ccccccCceEEEEEcCCCCEEEEECCC
Confidence            88888 776555555678999999999999988874322110000        001111234688999997778888889


Q ss_pred             CCcEEEEccCCC
Q 001310         1063 NGEVYVIEPNEP 1074 (1103)
Q Consensus      1063 dg~v~vw~~~~~ 1074 (1103)
                      .+.|.+.++...
T Consensus       227 ~~~v~~i~l~~~  238 (266)
T 2iwa_A          227 WPKLFEIKLHLV  238 (266)
T ss_dssp             CSEEEEEEEEEC
T ss_pred             CCeEEEEEEecc
Confidence            999999998544

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.71  E-value=2.4e-05  Score=91.64  Aligned_cols=149  Identities=13%  Similarity=0.100  Sum_probs=97.5

Q ss_pred             CeEEEEEcCCceeEEEecc--CC--------CCEEEEEEc-cCCC---EEEEEeCCCeEEEEEcCCCceeeeeeeec-C-
Q 001310          866 STILIYNARSSEVISKLEG--HS--------KRVTGLVFS-DALN---ILVSSGGDAQIFVWDVDGWGIQTCRSLQT-P-  929 (1103)
Q Consensus       866 g~v~iwd~~~~~~~~~l~~--h~--------~~V~~l~~s-~dg~---~l~s~s~dg~I~iwd~~~~~~~~~~~~~~-~-  929 (1103)
                      +.|..+|..+|+.+..++.  |.        .++. +... .+|+   .++.++.+|.++++|..+|+......+.. . 
T Consensus       291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~  369 (582)
T 1flg_A          291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT  369 (582)
T ss_dssp             SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred             ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence            6899999999999887753  32        1221 1221 4674   78889999999999999998654322211 0 


Q ss_pred             --------CCc-------cc---------------CC-----CCceEEEEcCCCCEEEEE-e------------------
Q 001310          930 --------DGV-------MT---------------LA-----PSETHIQFHKDQTRFLLV-H------------------  955 (1103)
Q Consensus       930 --------~~~-------~~---------------~~-----~~v~~l~fs~dg~~l~~~-~------------------  955 (1103)
                              .+.       ..               ..     ..-..++++|+..++.+. .                  
T Consensus       370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~  449 (582)
T 1flg_A          370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA  449 (582)
T ss_dssp             SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred             ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence                    000       00               00     001256788876665542 1                  


Q ss_pred             ---------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          956 ---------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       956 ---------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                                     ++.|.-||+.+|+.+.+...+  .++..-.....+..+++++.|+.++.||.++|+.+.++.
T Consensus       450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~  524 (582)
T 1flg_A          450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             eeccceeecCCCCCCcceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence                           467999999999988764432  223222233456678889999999999999999998887

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.69  E-value=3.4e-05  Score=90.33  Aligned_cols=378  Identities=11%  Similarity=-0.005  Sum_probs=203.8

Q ss_pred             EEEEEcC-CCceEEEeC-CCCceeEEeecCCCc-e----------EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE
Q 001310          457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-V----------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV  523 (1103)
Q Consensus       457 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-v----------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~  523 (1103)
                      .++.++. ++.|.-+|. .+|+.+.++...... +          ..+++    .+..++.++.|+.+..+|..+++...
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W  139 (571)
T 2ad6_A           64 MMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY----GAGQIVKKQANGHLLALDAKTGKINW  139 (571)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE----ETTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE----ECCEEEEEeCCCEEEEEECCCCCEEE
Confidence            3666666 889999999 899998776533210 0          11222    23478888899999999999999887


Q ss_pred             EecCCCc----cEEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeeEEEEeccccc-------------------
Q 001310          524 DYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ-------------------  577 (1103)
Q Consensus       524 ~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------  577 (1103)
                      .......    .+.+ ..+ .++ .++++....  ..++.|+.+|..+|+.+-.+......                   
T Consensus       140 ~~~~~~~~~~~~~~~~P~v-~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~  217 (571)
T 2ad6_A          140 EVEVCDPKVGSTLTQAPFV-AKD-TVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQF  217 (571)
T ss_dssp             EEECCCGGGTCBCCSCCEE-ETT-EEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCS
T ss_pred             EecCCCCCccceeccCCEE-ECC-EEEEEecCCccCCCCEEEEEECCCCcEEEEEccCCCccccccCccccccccccccc
Confidence            6654321    1111 111 134 455544311  11567999999999988776543200                   


Q ss_pred             ---------------CC-ceEEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeeEEEEcCCCCC---
Q 001310          578 ---------------HN-SVSVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGL---  622 (1103)
Q Consensus       578 ---------------~~-~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~---  622 (1103)
                                     .. ....+++.++...++.+..+                +.|..+|..+|+.+-.++...+.   
T Consensus       218 ~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d  297 (571)
T 2ad6_A          218 GLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWD  297 (571)
T ss_dssp             SHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSC
T ss_pred             ccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccc
Confidence                           00 00135566776777776532                35999999999998887643211   


Q ss_pred             -CCCce---EEEecCCC---EEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCC
Q 001310          623 -PENPR---ICFNKNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPK  695 (1103)
Q Consensus       623 -~~v~~---v~~s~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s  695 (1103)
                       ..+..   +....+|+   .++.++.+|.+.++|..+++.+.........-..-.+.+                     
T Consensus       298 ~~~~~~p~l~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~---------------------  356 (571)
T 2ad6_A          298 FAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDL---------------------  356 (571)
T ss_dssp             CCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECT---------------------
T ss_pred             cccCCCCEEEecccCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccc---------------------
Confidence             01111   22224674   677888899999999999988765542210000000000                     


Q ss_pred             CCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccc
Q 001310          696 EDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEAT  775 (1103)
Q Consensus       696 ~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~  775 (1103)
                      ..+..+.....         .. .+........|.......-..++++|+...+++...+....++..+..         
T Consensus       357 ~~g~p~~~~~~---------~~-~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~---------  417 (571)
T 2ad6_A          357 KTGTPVRDPEF---------AT-RMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWEPFMLP---------  417 (571)
T ss_dssp             TTCSEEECGGG---------CC-CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC---------
T ss_pred             cCCceeccccc---------CC-CCCCCceEECCCCccccCCCCceECCCCCEEEEEchhccccccccccc---------
Confidence            00000000000         00 000000111111001111135678999888888877654444432210         


Q ss_pred             cccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCC
Q 001310          776 TKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHD  855 (1103)
Q Consensus       776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d  855 (1103)
                               ...+..          .......+..+|.+.  ....++.+..||..+++.+.++.... .+.+..+.. .
T Consensus       418 ---------~~~g~~----------~~g~~~~~~~~~~~~--~~~~~g~l~a~D~~tG~~~W~~~~~~-~~~~~~~~t-~  474 (571)
T 2ad6_A          418 ---------YRAGQF----------FVGATLAMYPGPNGP--TKKEMGQIRAFDLTTGKAKWTKWEKF-AAWGGTLYT-K  474 (571)
T ss_dssp             ---------CCTTSC----------CCCEEEEEEECTTST--TSCCCEEEEEECTTTCCEEEEEEESS-CCCSBCEEE-T
T ss_pred             ---------cccCCc----------cccccceeccCcccc--CCCCCCeEEEEECCCCCEEEEecCCC-CccceeEEE-C
Confidence                     000110          000011122233221  00124788899999998887765322 222222222 3


Q ss_pred             CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC-EEEEEEccCCCEEEE
Q 001310          856 NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALNILVS  903 (1103)
Q Consensus       856 ~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~~l~s  903 (1103)
                      +.++++++.||.|+.+|..+|+.+.++...... ...+.+..+|+.++.
T Consensus       475 gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~  523 (571)
T 2ad6_A          475 GGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG  523 (571)
T ss_dssp             TTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred             CCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence            457777999999999999999999888743221 122345577765553

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.67  E-value=6.5e-05  Score=87.97  Aligned_cols=378  Identities=11%  Similarity=0.067  Sum_probs=201.8

Q ss_pred             EEEEcCCCceEEEeCCCCceeEEeecCCCce---------EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC
Q 001310          458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPV---------YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP  528 (1103)
Q Consensus       458 l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v---------~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~  528 (1103)
                      ++.++.++.|.-+|..+|+.+.++.......         ..+++    .+..++.++.|+.|..+|..+++.+......
T Consensus        71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~  146 (582)
T 1flg_A           71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA  146 (582)
T ss_dssp             EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred             EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence            4445543449999999999988775433210         11222    2347888899999999999999988766543


Q ss_pred             Cc----cEE-EEEEcc---CCC-EEEEEecCC--CCceeEEEEeCCCCeeEEEEeccccc--------------------
Q 001310          529 GL----GCT-RMAYSA---NGR-RLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ--------------------  577 (1103)
Q Consensus       529 ~~----~i~-~~~~s~---dg~-~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~--------------------  577 (1103)
                      ..    .+. ...+..   +|+ .++++....  ..++.|+.+|..+|+.+-........                    
T Consensus       147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w  226 (582)
T 1flg_A          147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW  226 (582)
T ss_dssp             CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred             CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence            21    111 111122   234 454443211  12678999999999987665431100                    


Q ss_pred             ------------------CCceEEEEEcCCCCEEEEEeC--------------------C----CcEEEEECCCCeeEEE
Q 001310          578 ------------------HNSVSVVHFDTAKDQILAAGD--------------------D----HVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       578 ------------------~~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~  615 (1103)
                                        ...-..+++.|+...++.+..                    |    +.|.-+|..+|+.+-.
T Consensus       227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~  306 (582)
T 1flg_A          227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF  306 (582)
T ss_dssp             CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred             CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence                              000123456677778877663                    2    5899999999999988


Q ss_pred             EcCCCCC----CCCc-eEEEe---cCCC---EEEEEECCCeEEEEEcCCCCeeEecccccc--ceeeeEEecCCceeeee
Q 001310          616 IDAGGGL----PENP-RICFN---KNGT---LLAVIANENRIKILETPESNSVDAAGVLSD--NLRKLSVNPISTVTGAG  682 (1103)
Q Consensus       616 ~~~~~~~----~~v~-~v~~s---~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~--~i~~~~~~~~~~~~~~~  682 (1103)
                      ++...+.    ..+. -+.+.   .+|+   .++.++.+|.++++|..+++.+........  ....+  .+        
T Consensus       307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~--~~--------  376 (582)
T 1flg_A          307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHI--DL--------  376 (582)
T ss_dssp             EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEE--CT--------
T ss_pred             EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccc--cc--------
Confidence            7643221    0111 12222   4674   788899999999999999988876543221  01111  00        


Q ss_pred             ccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEee
Q 001310          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWR  762 (1103)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~  762 (1103)
                       ..+.........|..  +..  .            .+........|.......-..++++|+...+++...+-...++.
T Consensus       377 -~~g~p~~~~~~~~~~--~~~--~------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~  439 (582)
T 1flg_A          377 -KTGRPVEREGQRPPL--PEP--G------------QKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWT  439 (582)
T ss_dssp             -TTCCEEECTTCSCCC--CCT--T------------CSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEE
T ss_pred             -cCCCEeEccccCCcc--ccc--c------------ccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeec
Confidence             000000000000000  000  0            00000111111111111122567788877777766553333332


Q ss_pred             cCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCC
Q 001310          763 WPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP  842 (1103)
Q Consensus       763 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~  842 (1103)
                      .+..                  ...|            ....-..+...|++    ...+|.|..||+.+++.+.+....
T Consensus       440 ~~~~------------------~~~g------------~~~~g~~~~~~p~~----~~~~G~l~A~D~~tG~~~W~~~~~  485 (582)
T 1flg_A          440 EEVS------------------YTKG------------SAYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEH  485 (582)
T ss_dssp             CCCC------------------CCTT------------SCCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEES
T ss_pred             cccc------------------ccCC------------CceeccceeecCCC----CCCcceEEEEECCCCCEEEEecCC
Confidence            1110                  0001            11111122222331    012578999999999988776532


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCE-EEEEEccCCCEEE
Q 001310          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNILV  902 (1103)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l~  902 (1103)
                      . .+..-.... .+.++++|+.||.++.||..+|+.+.+++...+.+ .-+.+..||+..+
T Consensus       486 ~-~~~~g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          486 L-PLWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             S-CCCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             C-CCcccceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            2 221111112 34578889999999999999999998887543322 2256667886444

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.63  E-value=9.4e-05  Score=86.30  Aligned_cols=381  Identities=11%  Similarity=0.036  Sum_probs=201.9

Q ss_pred             EEEEEcC-CCceEEEeC-CCCceeEEeecCCCc-----------eEEEEeeecC--CccEEEEEECCCeEEEEEcCCCCe
Q 001310          457 SVITCGD-DKTIKVWDA-VTGSRTYSFEGHGAP-----------VYSLCPHAKE--NIHFIFSISVDGKIKAWLYDSLGA  521 (1103)
Q Consensus       457 ~l~s~~~-d~~i~iwd~-~~~~~~~~~~~~~~~-----------v~~~~~~~~~--~~~~l~s~~~dg~i~iwd~~~~~~  521 (1103)
                      .++.++. ++.|.-+|. .+|+.+.++......           ...+++.+..  ....|+.++.|+.+..+|..+++.
T Consensus        64 ~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~  143 (599)
T 1w6s_A           64 KMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGET  143 (599)
T ss_dssp             EEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCE
T ss_pred             EEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcCCCEEEEEECCCCCE
Confidence            4666666 889999999 899998777543211           1122331111  112378888999999999999998


Q ss_pred             eEEecCCCc----cEEE-EEEccCCCEEEEEecCC--CCceeEEEEeCCCCeeEEEEecccccC----------------
Q 001310          522 RVDYDAPGL----GCTR-MAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQH----------------  578 (1103)
Q Consensus       522 ~~~~~~~~~----~i~~-~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~----------------  578 (1103)
                      +........    .+.+ ..+ .++ .+++++...  ..++.|+.+|..+|+.+-.+.......                
T Consensus       144 ~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g  221 (599)
T 1w6s_A          144 VWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYG  221 (599)
T ss_dssp             EEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred             EEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCCCCcccccccccccccccccc
Confidence            876554321    1111 111 244 444443211  125789999999999887765432100                


Q ss_pred             ------------------Cce-EEEEEcCCCCEEEEEeCC----------------CcEEEEECCCCeeEEEEcCCCCCC
Q 001310          579 ------------------NSV-SVVHFDTAKDQILAAGDD----------------HVIKIWDMNKVQLLTTIDAGGGLP  623 (1103)
Q Consensus       579 ------------------~~v-~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~  623 (1103)
                                        ..+ ...++.++...++.+..+                +.|.-+|..+|+.+-.++...+..
T Consensus       222 ~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~  301 (599)
T 1w6s_A          222 QKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDE  301 (599)
T ss_dssp             CTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCS
T ss_pred             ccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCcc
Confidence                              000 134566777788887665                379999999999998876543210


Q ss_pred             ----CCce-EEEe---cCC---CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecC
Q 001310          624 ----ENPR-ICFN---KNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNE  692 (1103)
Q Consensus       624 ----~v~~-v~~s---~~g---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  692 (1103)
                          .... +.+.   .+|   ..++.++.+|.+.++|..+++.+.........-..-.+.         ...+...+..
T Consensus       302 wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~---------~~~g~p~~~~  372 (599)
T 1w6s_A          302 WDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVD---------LKTGQPVRDP  372 (599)
T ss_dssp             SCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEEC---------TTTCCEEECG
T ss_pred             ccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEeecccccCCcccccccc---------cCCCceeecc
Confidence                0111 2222   467   567778899999999999998876543211000000000         0000000000


Q ss_pred             CCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccc
Q 001310          693 DPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST  772 (1103)
Q Consensus       693 ~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~  772 (1103)
                      ...+                      .+.....+..|.......-..++++|+...+++...+-...++.....      
T Consensus       373 ~~~~----------------------~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~------  424 (599)
T 1w6s_A          373 EYGT----------------------RMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEPFMLP------  424 (599)
T ss_dssp             GGCC----------------------CTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEECCCC------
T ss_pred             ccCC----------------------CCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceeeeccccc------
Confidence            0000                      000011111222111222235788999888887776633322211100      


Q ss_pred             ccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeE-EEE
Q 001310          773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATS-LAF  851 (1103)
Q Consensus       773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~-l~~  851 (1103)
                                  ...+..          .-..-..+..+|.+........|.+..||+.+++.+.+.......... ++.
T Consensus       425 ------------~~~g~~----------~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~t  482 (599)
T 1w6s_A          425 ------------YKAGQF----------FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMAT  482 (599)
T ss_dssp             ------------CCTTSC----------CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEE
T ss_pred             ------------ccCCcc----------eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEe
Confidence                        000100          000000011112110000002467888999999887776422111111 222


Q ss_pred             cCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCE-EEEEEccCCCEE
Q 001310          852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALNIL  901 (1103)
Q Consensus       852 s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~~l  901 (1103)
                         .+.+++.++.||.++.||..+|+.+.+++-..+.+ .-+.+..||+..
T Consensus       483 ---agg~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qy  530 (599)
T 1w6s_A          483 ---AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQY  530 (599)
T ss_dssp             ---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             ---cCCEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEE
Confidence               34577779999999999999999998886433211 224555677643

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.62  E-value=3.4e-06  Score=84.96  Aligned_cols=184  Identities=12%  Similarity=0.109  Sum_probs=126.9

Q ss_pred             eeEEEEecCCCEEEEEc-CC--eEEEEEcCCceeeEEecCCCCC-eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001310          805 VPCFALSKNDAYLFSAS-GG--VISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1103)
Q Consensus       805 v~~l~~s~d~~~l~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1103)
                      ...+.|+ ++.++.+.+ +|  .|+.+|+.+++.++++...... --.+++.  ++++.+....++.+.+||..+.+.+.
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEEe--CCEEEEEEeeCCEEEEEECccCcEEE
Confidence            4678898 676666665 44  7999999999999888654322 2335554  34555556678999999999999999


Q ss_pred             EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeE
Q 001310          881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL  959 (1103)
Q Consensus       881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v  959 (1103)
                      ++..-.   ....+++|++.|+.+..++.|.++|..+.+......+.. .+...  ..+..+.|. +|+..+.. .++.|
T Consensus       122 ti~~~~---eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~--~~lNELe~~-~G~lyan~w~~~~I  194 (262)
T 3nol_A          122 SFNYDG---EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEEL--PELNELEWV-DGEIFANVWQTNKI  194 (262)
T ss_dssp             EEECSS---CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEEC--CCEEEEEEE-TTEEEEEETTSSEE
T ss_pred             EEECCC---CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccc--cccceeEEE-CCEEEEEEccCCeE
Confidence            887422   223444678777776668889999999877655433321 11110  134457776 77766555 67899


Q ss_pred             EEEECCCceEEEEeeCCC-----------CcCeEEEEEccCCCEEEEEec
Q 001310          960 AIYEAEELTCLKQWFPIS-----------SVPISQATFSCDCRMVFTSFV  998 (1103)
Q Consensus       960 ~iwd~~~~~~~~~~~~~h-----------~~~v~~l~fs~dg~~l~t~~~  998 (1103)
                      .+.|.++|+.+..+-...           ..-...|+|+|+++.|++.+.
T Consensus       195 ~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          195 VRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             EEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             EEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            999999999987754321           234588999999887776663

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.59  E-value=0.0045  Score=75.83  Aligned_cols=534  Identities=11%  Similarity=0.043  Sum_probs=284.6

Q ss_pred             CccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC
Q 001310          396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG  475 (1103)
Q Consensus       396 ~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~  475 (1103)
                      ...|.++.-..+|. |-.|+.+| +..||-..-+.....  -......|.++....+|.   |..|+.+| +..+|..+.
T Consensus        21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~   92 (758)
T 3ott_A           21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD   92 (758)
T ss_dssp             CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred             cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence            46799999888875 44556777 666663221111100  011234688888777775   44555554 889998776


Q ss_pred             ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe----cCCCccEEEEEEccCCCEEEEEecCC
Q 001310          476 SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY----DAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       476 ~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~----~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      +...........|.++..   .++ .|..++.+ -+..+|..+.+.....    ......|.++....+|...+.. .  
T Consensus        93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt-~--  164 (758)
T 3ott_A           93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT-Y--  164 (758)
T ss_dssp             EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE-T--
T ss_pred             EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe-C--
Confidence            533211112234666543   244 45555655 5777887665433220    1223468888888888876643 2  


Q ss_pred             CCceeEEEEeCCCCeeEEEEeccc---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1103)
                        . -+..++..+++... +....   .....|.++....++..|..|+. +-+..+|..+++........  ...|.++
T Consensus       165 --~-Gl~~~~~~~~~~~~-~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i  237 (758)
T 3ott_A          165 --N-GLCRYIPSNGKFEG-IPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSL  237 (758)
T ss_dssp             --T-EEEEEETTTTEEEE-ECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEE
T ss_pred             --C-CHhhCccCCCceEE-ecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEE
Confidence              1 27888887765432 22111   01234888888777776666664 46888998876543221111  1236777


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCCeeEecc-------ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccc
Q 001310          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAG-------VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPE  701 (1103)
Q Consensus       629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l  701 (1103)
                      ....+|.+.+ |+.+ -+.+++..+........       .....|.++.....+                      ..-
T Consensus       238 ~~d~~g~lWi-gT~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g----------------------~lW  293 (758)
T 3ott_A          238 ALDGNGDLLA-GTDN-GLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEH----------------------NIW  293 (758)
T ss_dssp             EECTTCCEEE-EETT-EEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTC----------------------CEE
T ss_pred             EEcCCCCEEE-EeCC-ceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCC----------------------CEE
Confidence            7777776555 4544 57788876553321111       112234444443222                      211


Q ss_pred             eeeccccccccccccccCCccceeeec---cCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCcccccccccccc
Q 001310          702 ISVEAENKSEVEKPLFARPSECQSLLL---PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKV  778 (1103)
Q Consensus       702 ~s~~~d~~i~~w~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~  778 (1103)
                      + |...| +.+....    ........   ........|.++....+|..-+. +.+|. ..++-.....         .
T Consensus       294 i-GT~~G-l~~~~~~----~~~~~~~~~~~~~~~~~~~v~~i~~D~~g~lWiG-t~~Gl-~~~~~~~~~~---------~  356 (758)
T 3ott_A          294 L-GTDYG-ISLSRYN----SALQFIPISQITGTGDGNQFYSLFRDSKGFYWFG-GANGL-IRFTDPAGER---------H  356 (758)
T ss_dssp             E-EESSS-EEEECCC----C-CEEEEHHHHSCSCCCCBEEEEEECTTCCEEEE-ETTEE-EEESCTTSSC---------C
T ss_pred             E-EeCCc-ccccccC----CceeEEecccCCCCCCCceEEEEEEcCCCCEEEe-eCCcc-eeeccccccc---------c
Confidence            1 11122 2111110    00000000   01112356888888888875444 45553 3333221100         0


Q ss_pred             CCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEe--cC----CCCCeeEEEEc
Q 001310          779 PPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTI--MP----PSPTATSLAFN  852 (1103)
Q Consensus       779 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~--~~----~~~~i~~l~~s  852 (1103)
                      ....+......    ..    -....|.++...++|++.+.. ++.+..+|..+++...-.  ..    ....|.++...
T Consensus       357 ~~~~~~~~~~~----~~----l~~~~v~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d  427 (758)
T 3ott_A          357 DAIWYRMGDKT----YP----LSHNRIRHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFED  427 (758)
T ss_dssp             CCEEECTTCSS----SC----CSCSCEEEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEEC
T ss_pred             eeEEeccCCcC----CC----CCCCceEEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEc
Confidence            01111110000    00    134568899988888877755 567999998877543321  11    23467888887


Q ss_pred             CCCCCEEEEEeCCCeEEEEEcCCc-----eeE---EEec---c-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCce
Q 001310          853 PHDNNVIAIGMDDSTILIYNARSS-----EVI---SKLE---G-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGI  920 (1103)
Q Consensus       853 ~~d~~~lasg~~dg~v~iwd~~~~-----~~~---~~l~---~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~  920 (1103)
                      + +++ |-.|+..+-+.++|..+.     ...   ..+.   + ....|.++...++|.+.+.++..+-|..+|..+++.
T Consensus       428 ~-~g~-lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~  505 (758)
T 3ott_A          428 T-AGQ-LWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREV  505 (758)
T ss_dssp             T-TSE-EEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEE
T ss_pred             C-CCC-EEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCce
Confidence            6 554 555776666888885531     111   1111   1 123589999999998776444444588899887654


Q ss_pred             eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCC-CCcCeEEEEEccCCCEEEEEecC
Q 001310          921 QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPI-SSVPISQATFSCDCRMVFTSFVD  999 (1103)
Q Consensus       921 ~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~-h~~~v~~l~fs~dg~~l~t~~~d  999 (1103)
                      ...   .. .+. .....+.++....+|.+.+.+. +-+..|+..+++...-...+ ....|.++... +|. |..++..
T Consensus       506 ~~~---~~-~~~-~~~~~~~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~~~~~~~gl~~~~i~~i~~~-~g~-lWi~t~~  577 (758)
T 3ott_A          506 TKL---FA-DEL-TGEKSPNYLLCDEDGLLWVGFH-GGVMRINPKDESQQSISFGSFSNNEILSMTCV-KNS-IWVSTTN  577 (758)
T ss_dssp             EEE---CT-TTS-CGGGCEEEEEECTTSCEEEEET-TEEEEECC--CCCCBCCCCC---CCEEEEEEE-TTE-EEEEESS
T ss_pred             EEe---cC-CCc-CCCcccceEEECCCCCEEEEec-CceEEEecCCCceEEecccCCCccceEEEEEC-CCC-EEEECCC
Confidence            331   11 110 0012578888889998887654 56888887665432210011 13567777763 554 5555556


Q ss_pred             CcEEEEeCCCceeE
Q 001310         1000 GTLSIHEASNLEVQ 1013 (1103)
Q Consensus      1000 g~v~vWd~~~~~~~ 1013 (1103)
                      | +..+|..+.+..
T Consensus       578 G-l~~~~~~~~~~~  590 (758)
T 3ott_A          578 G-LWIIDRKTMDAR  590 (758)
T ss_dssp             C-EEEEETTTCCEE
T ss_pred             C-eEEEcCCCceeE
Confidence            5 778898877643

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.57  E-value=5.1e-06  Score=83.61  Aligned_cols=182  Identities=7%  Similarity=0.061  Sum_probs=125.7

Q ss_pred             CeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCe--eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEE
Q 001310          804 AVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTA--TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS  880 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i--~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~  880 (1103)
                      -...+.|+. +.++.+.+ +|.|+++|+++++.++++ -. ...  -.+++.  ++++.+....++.+.+||..+.+.+.
T Consensus        56 ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~~~  130 (268)
T 3nok_A           56 FTQGLVFHQ-GHFFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQRER  130 (268)
T ss_dssp             CEEEEEEET-TEEEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEEEE
T ss_pred             ccceEEEEC-CEEEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcEEE
Confidence            346788873 55555555 688999999999998887 22 233  335554  45666667788999999999999999


Q ss_pred             EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeE
Q 001310          881 KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHL  959 (1103)
Q Consensus       881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v  959 (1103)
                      ++..- ..-  ..+++|++.|+.+..++.|.++|..+.+......+.......   ..+..+.|. +|+..+.. .++.|
T Consensus       131 ti~~~-~eG--wGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v---~~lNeLe~~-dG~lyanvw~s~~I  203 (268)
T 3nok_A          131 TTRYS-GEG--WGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPV---ELINELECA-NGVIYANIWHSSDV  203 (268)
T ss_dssp             EEECS-SCC--CCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEEC---CCEEEEEEE-TTEEEEEETTCSEE
T ss_pred             EEeCC-Cce--eEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCccc---ccccccEEe-CCEEEEEECCCCeE
Confidence            88742 222  334467888887777999999999998766543332211111   134567777 77655555 57799


Q ss_pred             EEEECCCceEEEEeeCC------------CCcCeEEEEEccCCCEEEEEe
Q 001310          960 AIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       960 ~iwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      .+.|.++|+.+..+-.+            -..-...|+++|+++.|++.+
T Consensus       204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG  253 (268)
T 3nok_A          204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG  253 (268)
T ss_dssp             EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred             EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence            99999999988775432            123568899999876665554

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.54  E-value=8.6e-06  Score=99.34  Aligned_cols=248  Identities=10%  Similarity=-0.008  Sum_probs=134.3

Q ss_pred             CceEEEec-CCCceEEEEEcCCC----cEEEEECCCC-CeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCC
Q 001310          336 SPMSMDFH-PVQHTLLLVGTNVG----DTGLWDVNSG-QKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS  409 (1103)
Q Consensus       336 ~V~~v~~s-pdg~~llasgs~d~----~v~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~  409 (1103)
                      .+...+|| |||++++.+.+.+|    +|+++|+.+| +.+.. .                 +   ......++|||||+
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~-~-----------------~---~~~~~~~~WspDg~  233 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD-K-----------------V---SGTNGEIVWGPDHT  233 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC-C-----------------E---EEECSCCEECSSTT
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc-c-----------------c---cCceeeEEEecCCC
Confidence            67889999 99996555544433    4999999998 63321 0                 0   01234688999999


Q ss_pred             EEEEEeCC-----CeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEc-CCCceEEEeCCCCc-ee--E
Q 001310          410 LLGVAYSK-----HIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGS-RT--Y  479 (1103)
Q Consensus       410 ~las~~~d-----~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~-~~--~  479 (1103)
                      .|+....+     ..|.++++.++..... ..+. .+......+.|||||+.+++.+.. ....|.++|+.++. ..  .
T Consensus       234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~-lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~  312 (751)
T 2xe4_A          234 SLFYVTKDETLRENKVWRHVMGKLQSEDV-CLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE  312 (751)
T ss_dssp             EEEEEEECTTCCEEEEEEEETTSCGGGCE-EEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred             EEEEEEECCCCCCCEEEEEECCCCchhcE-EEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence            99887665     3588888877642211 1222 223346688999999963333322 23468888988763 22  3


Q ss_pred             Ee-ecCCCceEEEEeeecCCccEEEEEECC--C--eEEEEEcCCCCeeEE-ecCCCc--cEEEEEEccCCCEEEEEecCC
Q 001310          480 SF-EGHGAPVYSLCPHAKENIHFIFSISVD--G--KIKAWLYDSLGARVD-YDAPGL--GCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       480 ~~-~~~~~~v~~~~~~~~~~~~~l~s~~~d--g--~i~iwd~~~~~~~~~-~~~~~~--~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      .+ ........++.|+  .++.+++....+  +  .|..+++.+...... +..+..  .+..+.+  ++..|+.... .
T Consensus       313 ~l~~~~~~~~~s~~~~--~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~  387 (751)
T 2xe4_A          313 IVRPREKGVRYDVQMH--GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R  387 (751)
T ss_dssp             ESSCCCTTCCEEEEEE--TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred             EeecCCCCceEEEeee--eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence            33 3334455555432  233344444443  2  566667654222112 222222  3444444  4566655543 2


Q ss_pred             CCceeEEEEeC-------CCCeeEEEEecccccCCceEEEEE----cCCCCEE-EEEeCC---CcEEEEECCCCee
Q 001310          552 EGESFLVEWNE-------SEGAIKRTYQGLQLQHNSVSVVHF----DTAKDQI-LAAGDD---HVIKIWDMNKVQL  612 (1103)
Q Consensus       552 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~~~v~~~~~----~~~~~~l-~~~~~d---g~i~iwd~~~~~~  612 (1103)
                      ++...|+++++       .+++....+....  ...+..+.+    ++++..+ ++.+..   ..++.+|+.+++.
T Consensus       388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~--~~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~  461 (751)
T 2xe4_A          388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEE--PIFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR  461 (751)
T ss_dssp             TTEEEEEEEECCTTTSCCCTTTCCEECCCCC--SSCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred             CCEEEEEEEecccccccccCCccceEECCCC--ceeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence            34567888886       4443133332211  122333322    3455544 333322   4677888877654

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.53  E-value=1e-05  Score=81.53  Aligned_cols=185  Identities=13%  Similarity=0.056  Sum_probs=129.8

Q ss_pred             EEEEEEecCCCceEEEEEcCCC--ceEEEeCCCCceeEEeecCCCce-EEEEeeecCCccEEEEEECCCeEEEEEcCCCC
Q 001310          444 VNDLAFSAPCKQISVITCGDDK--TIKVWDAVTGSRTYSFEGHGAPV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLG  520 (1103)
Q Consensus       444 v~~~~~s~d~~~~~l~s~~~d~--~i~iwd~~~~~~~~~~~~~~~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~  520 (1103)
                      ...+.|+ ++.  +..+.+.+|  .|+++|+++|+.+..+....... ..+++  . ++.+.+..-.++.+.++|..+.+
T Consensus        45 tqGL~~~-~~~--LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~-g~~ly~ltw~~~~v~v~D~~t~~  118 (262)
T 3nol_A           45 TEGFFYR-NGY--FYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--W-KDKIVGLTWKNGLGFVWNIRNLR  118 (262)
T ss_dssp             EEEEEEE-TTE--EEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--E-TTEEEEEESSSSEEEEEETTTCC
T ss_pred             cceEEEE-CCE--EEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--e-CCEEEEEEeeCCEEEEEECccCc
Confidence            4788898 654  666777666  89999999999998886443221 23444  3 23455555568999999999999


Q ss_pred             eeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc--cCCceEEEEEcCCCCEEEEEeC
Q 001310          521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGD  598 (1103)
Q Consensus       521 ~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~  598 (1103)
                      ...++.....   ...+++|++.|+.+.    +...|.++|..+.+.+..+.....  .-..++.+.|. +|...+..-.
T Consensus       119 ~~~ti~~~~e---G~glt~dg~~L~~Sd----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~  190 (262)
T 3nol_A          119 QVRSFNYDGE---GWGLTHNDQYLIMSD----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQ  190 (262)
T ss_dssp             EEEEEECSSC---CCCEEECSSCEEECC----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETT
T ss_pred             EEEEEECCCC---ceEEecCCCEEEEEC----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEcc
Confidence            8887765442   234557888887753    256799999999998888765320  11345567776 6654444447


Q ss_pred             CCcEEEEECCCCeeEEEEcCCCC----------CCCCceEEEecCCCEEEEEEC
Q 001310          599 DHVIKIWDMNKVQLLTTIDAGGG----------LPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       599 dg~i~iwd~~~~~~~~~~~~~~~----------~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      ++.|.+.|..+++.+..+...+-          ....+.+||+|+++.|++.+.
T Consensus       191 ~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTGK  244 (262)
T 3nol_A          191 TNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTGK  244 (262)
T ss_dssp             SSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEET
T ss_pred             CCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEECC
Confidence            88999999999999998876421          123478999999888887775

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.49  E-value=1.8e-05  Score=85.78  Aligned_cols=240  Identities=10%  Similarity=-0.010  Sum_probs=145.7

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEec-----------------cccccEEEEEEec-CCCceEE
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-----------------AHVGNVNDLAFSA-PCKQISV  458 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-----------------~h~~~v~~~~~s~-d~~~~~l  458 (1103)
                      .....++|+++|+++.++..++.|..|+..++.. .......                 .....+..+++.+ +++   |
T Consensus        19 ~~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~---l   94 (322)
T 2fp8_A           19 YAPNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGF-VDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ---L   94 (322)
T ss_dssp             SCCCCEECCTTCSSEEEECTTSEEEEECCTTTCE-EEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE---E
T ss_pred             CCceEEEEcCCCCEEEEEcCCCeEEEECCCCCce-EEEecccccccccccccccchhccccCCCCceEEEcCCCCc---E
Confidence            4556789999999888888889999998876532 1110000                 1123578999998 665   4


Q ss_pred             EEEcCCCceEEEeCCCCceeEEeec-----CCCceEEEEeeecC-CccEEEEEEC-----------------CCeEEEEE
Q 001310          459 ITCGDDKTIKVWDAVTGSRTYSFEG-----HGAPVYSLCPHAKE-NIHFIFSISV-----------------DGKIKAWL  515 (1103)
Q Consensus       459 ~s~~~d~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~-~~~~l~s~~~-----------------dg~i~iwd  515 (1103)
                      +.+...+.|..+|..++.. ..+..     .......+++.  + +|.+.++...                 ++.|..+|
T Consensus        95 ~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d--~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d  171 (322)
T 2fp8_A           95 YIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVD--QRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYD  171 (322)
T ss_dssp             EEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEEC--TTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEE
T ss_pred             EEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEe--cCCCEEEEECCcccccccccceehcccCCCceEEEEe
Confidence            4444445588898766543 22211     11245667774  4 5555555432                 36788888


Q ss_pred             cCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCCEE
Q 001310          516 YDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQI  593 (1103)
Q Consensus       516 ~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l  593 (1103)
                      ..++....... .......++++++|+.|+.+..   ..+.|+.+++....  ....+....   + ...+++.++|+..
T Consensus       172 ~~~~~~~~~~~-~~~~p~gia~~~dg~~lyv~d~---~~~~I~~~~~~~~~~~~~~~~~~~~---g-P~gi~~d~~G~l~  243 (322)
T 2fp8_A          172 PSTKETTLLLK-ELHVPGGAEVSADSSFVLVAEF---LSHQIVKYWLEGPKKGTAEVLVKIP---N-PGNIKRNADGHFW  243 (322)
T ss_dssp             TTTTEEEEEEE-EESCCCEEEECTTSSEEEEEEG---GGTEEEEEESSSTTTTCEEEEEECS---S-EEEEEECTTSCEE
T ss_pred             CCCCEEEEecc-CCccCcceEECCCCCEEEEEeC---CCCeEEEEECCCCcCCccceEEeCC---C-CCCeEECCCCCEE
Confidence            76554332211 1123456899999997776643   24569999987521  122222222   3 6788999999866


Q ss_pred             EEEeC----------CCcEEEEECCCCeeEEEEcCCCC--CCCCceEEEecCCCEEEEEECCCeEEEEEcCC
Q 001310          594 LAAGD----------DHVIKIWDMNKVQLLTTIDAGGG--LPENPRICFNKNGTLLAVIANENRIKILETPE  653 (1103)
Q Consensus       594 ~~~~~----------dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~  653 (1103)
                      ++...          .+.|..+|. .++.+..+....+  ...+..+++ .+++++++....+.|..+++..
T Consensus       244 va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          244 VSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            66544          467888887 4777777765432  234566666 4565555555678898888764

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.46  E-value=5.2e-05  Score=75.75  Aligned_cols=186  Identities=10%  Similarity=0.043  Sum_probs=126.5

Q ss_pred             CCCeeEEEEecCCCEEEEEc-C--CeEEEEEcCCceeeEEecCCCCC-eeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce
Q 001310          802 QEAVPCFALSKNDAYLFSAS-G--GVISLYIVMTFKTILTIMPPSPT-ATSLAFNPHDNNVIAIGMDDSTILIYNARSSE  877 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~-d--g~i~iwd~~~~~~~~~~~~~~~~-i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~  877 (1103)
                      ..-...+.|+. +.++.+.+ +  +.|+.+|+.+++.++.+...... --.+++.  ++++......++.+.+||..+.+
T Consensus        20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~   96 (243)
T 3mbr_X           20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLT   96 (243)
T ss_dssp             TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTE
T ss_pred             ccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCc
Confidence            34456889986 55555555 2  47999999999999888644332 2344554  45566667788999999999999


Q ss_pred             eEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eC
Q 001310          878 VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HE  956 (1103)
Q Consensus       878 ~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d  956 (1103)
                      .+.++..-. .=  ..+++|++.|..+..++.|.++|..+.+......+... +...  ..+..+.+. +|+..+.. .+
T Consensus        97 ~~~ti~~~~-~G--wglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~--~~lNeLe~~-~G~lyanvw~s  169 (243)
T 3mbr_X           97 PRARFRYPG-EG--WALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPL--DNLNELEWV-NGELLANVWLT  169 (243)
T ss_dssp             EEEEEECSS-CC--CEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEEC--CCEEEEEEE-TTEEEEEETTT
T ss_pred             EEEEEeCCC-Cc--eEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-Cccc--ccceeeEEe-CCEEEEEECCC
Confidence            999887432 22  33446777777667788999999999776553333221 1110  134556655 67655554 67


Q ss_pred             CeEEEEECCCceEEEEeeCC------------CCcCeEEEEEccCCCEEEEEe
Q 001310          957 THLAIYEAEELTCLKQWFPI------------SSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       957 ~~v~iwd~~~~~~~~~~~~~------------h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      +.|.+.|.++|+.+..+-.+            -..-.+.|+++|+++.|++.+
T Consensus       170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG  222 (243)
T 3mbr_X          170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG  222 (243)
T ss_dssp             TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence            79999999999998775422            123558899999887766665

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=98.45  E-value=0.0097  Score=72.84  Aligned_cols=566  Identities=11%  Similarity=0.054  Sum_probs=289.8

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      ...|.++.-..+|..+++  +.+| +..||-.+   ......             .  .......|.++....+| .|-.
T Consensus        21 ~n~V~~I~qD~~G~lWig--T~~G-L~ryDG~~---~~~~~~-------------~--~~~~~~~i~~i~~d~~g-~lWi   78 (758)
T 3ott_A           21 ASVVSCFLQDSEGLIWIG--SNKG-LFSYDGYS---TQQHFT-------------Y--GENNNTRIYCGVIIDNT-YLYM   78 (758)
T ss_dssp             CCCEEEEEECTTSCEEEE--ESSC-EEEECSSC---EEECSC-------------T--TSTTSSCEEEEEEETTT-EEEE
T ss_pred             cceEEEEEECCCCCEEEE--ECCC-ccccCCCc---eEEEEc-------------c--CCCCCceEEEEEEcCCC-cEEE
Confidence            347999999999974443  4555 56676321   111000             0  01124568888877766 5556


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee-----cCCCce
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----GHGAPV  488 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-----~~~~~v  488 (1103)
                      |+.+| +..||..++.... .  .......|.++.. .+|.   |..++.+ -+..+|..+++.. .+.     .....|
T Consensus        79 gT~~G-l~~yd~~~~~f~~-~--~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~~~-~~~~~~~~l~~~~i  148 (758)
T 3ott_A           79 GTDNG-ILVYNYRADRYEQ-P--ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRKLT-SFDTRRNGLPNNTI  148 (758)
T ss_dssp             EETTE-EEEEETTTTEECC-C--SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCCEE-EECHHHHCCSCSCE
T ss_pred             EeCCC-eEEEeCCCCEEEC-c--ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCeEE-EeccCCCCcCCCeE
Confidence            66666 7899987753211 1  1112235777654 4554   4444444 5888997766543 231     123457


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-cC----CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      .++..  +.++.+.+ ++.. -+..++..+....... ..    ....|.++...+++..|..++..     -+..+|..
T Consensus       149 ~~i~~--d~~g~lWi-gt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~~-----Gl~~~~~~  219 (758)
T 3ott_A          149 YSIIR--TKDNQIYV-GTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTEG-----YLFQYFPS  219 (758)
T ss_dssp             EEEEE--CTTCCEEE-EETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEEE-----EEEEEETT
T ss_pred             EEEEE--cCCCCEEE-EeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEECC-----CCeEEcCC
Confidence            77665  33444444 5544 4666776654432211 11    12247888888877765555421     28889988


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC-----CCCCCceEEEecCCCEEE
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG-----GLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~g~~l~  638 (1103)
                      +++.... ....  ...|.++....++.. ..|+. +-+.+++..+++.........     ....|.++....+|.+. 
T Consensus       220 ~~~~~~~-~~l~--~~~i~~i~~d~~g~l-WigT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-  293 (758)
T 3ott_A          220 TGQIKQT-EAFH--NNSIKSLALDGNGDL-LAGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-  293 (758)
T ss_dssp             TTEEEEE-EEEE--EEEEEEEEECTTCCE-EEEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-
T ss_pred             CCeEEec-cCCC--CCeEEEEEEcCCCCE-EEEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-
Confidence            7764332 2111  246888888777754 44554 458888887765433221110     11236677777777644 


Q ss_pred             EEECCCeEEEEEcCCCCeeEecc-----ccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccc
Q 001310          639 VIANENRIKILETPESNSVDAAG-----VLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVE  713 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~-----~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w  713 (1103)
                      +|+..| +.++.....-......     .....|.++....                      +|.+.+. ..+| +..+
T Consensus       294 iGT~~G-l~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~D~----------------------~g~lWiG-t~~G-l~~~  348 (758)
T 3ott_A          294 LGTDYG-ISLSRYNSALQFIPISQITGTGDGNQFYSLFRDS----------------------KGFYWFG-GANG-LIRF  348 (758)
T ss_dssp             EEESSS-EEEECCCC-CEEEEHHHHSCSCCCCBEEEEEECT----------------------TCCEEEE-ETTE-EEEE
T ss_pred             EEeCCc-ccccccCCceeEEecccCCCCCCCceEEEEEEcC----------------------CCCEEEe-eCCc-ceee
Confidence            455556 5444322111111110     0112334333332                      2222221 2222 2222


Q ss_pred             cccccCCccceeeec---cCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCc
Q 001310          714 KPLFARPSECQSLLL---PSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQ  790 (1103)
Q Consensus       714 ~~~~~~~~~~~~~~~---~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  790 (1103)
                      +..............   +.......|.++.-..+|..-+ ++. +-+..|+......            ..+.....  
T Consensus       349 ~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lWi-gt~-~GL~~~~~~~~~~------------~~~~~~~~--  412 (758)
T 3ott_A          349 TDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDKEQQLWI-ATD-GSINRYDYATRQF------------IHYNIVDN--  412 (758)
T ss_dssp             SCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECTTSCEEE-EET-TEEEEEETTTTEE------------EEEEEECC--
T ss_pred             cccccccceeEEeccCCcCCCCCCCceEEEEECCCCCEEE-EeC-CcHhhcCcCCCcE------------EEeecCCC--
Confidence            222111001101100   0011235688888888887544 443 4566666433221            11100000  


Q ss_pred             eeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCc-----eee---EEec---C-CCCCeeEEEEcCCCCCE
Q 001310          791 FMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----KTI---LTIM---P-PSPTATSLAFNPHDNNV  858 (1103)
Q Consensus       791 ~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~-----~~~---~~~~---~-~~~~i~~l~~s~~d~~~  858 (1103)
                            ........|.++...++|.+.+....+-+.++|..+.     ...   ..+.   + ....|.++...+ ++++
T Consensus       413 ------~~~~~~~~v~~i~~d~~g~lWigT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~-~g~l  485 (758)
T 3ott_A          413 ------TGTYNTNWTYYIFEDTAGQLWISTCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLSGMFINQIIPDN-EGNV  485 (758)
T ss_dssp             ------C--CBSSSEEEEEECTTSEEEEEESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCSCSCEEEEEECT-TSCE
T ss_pred             ------cCCCCCceEEEEEEcCCCCEEEEECCCceEEEccccccccCCcceecccccccccccccceeeeEEEcC-CCCE
Confidence                  0000235688888888888777665667888886531     111   1111   1 234688999988 7776


Q ss_pred             EEEEeCCCeEEEEEcCCceeEEEecc---CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccC
Q 001310          859 IAIGMDDSTILIYNARSSEVISKLEG---HSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTL  935 (1103)
Q Consensus       859 lasg~~dg~v~iwd~~~~~~~~~l~~---h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~  935 (1103)
                      .+.++..+-|..+|..+++.......   ....+.++....+|.+.+. +..| +..++..+++....   . ..+..  
T Consensus       486 Wi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~---~-~~gl~--  557 (758)
T 3ott_A          486 WVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQQSI---S-FGSFS--  557 (758)
T ss_dssp             EEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCCCBC---C-CCC----
T ss_pred             EEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCceEEe---c-ccCCC--
Confidence            65333345588899887764432211   1346888888888877764 4555 88888876553221   1 11111  


Q ss_pred             CCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEc-cCCCEEEEEecCCcEEEEeCC
Q 001310          936 APSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFS-CDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       936 ~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs-~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      ...|.++... +|++.+++ ++.|..+|..+.+...-  ......+....+. +||. |..|+.+| +..++..
T Consensus       558 ~~~i~~i~~~-~g~lWi~t-~~Gl~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~-l~fG~~~G-l~~f~p~  625 (758)
T 3ott_A          558 NNEILSMTCV-KNSIWVST-TNGLWIIDRKTMDARQQ--NMTNKRFTSLLFDPKEDC-VYLGGADG-FGISHSN  625 (758)
T ss_dssp             -CCEEEEEEE-TTEEEEEE-SSCEEEEETTTCCEEEC----CCCCCSEEEEETTTTE-EEEECBSE-EEEEEC-
T ss_pred             ccceEEEEEC-CCCEEEEC-CCCeEEEcCCCceeEEe--cCCCCceeeeEEECCCCc-EEEecCCc-eEEEChh
Confidence            1357777764 66655555 55588899887765431  1112233344443 4665 55577777 4455654

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.44  E-value=2.2e-05  Score=79.06  Aligned_cols=183  Identities=10%  Similarity=0.022  Sum_probs=128.6

Q ss_pred             EEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce--EEEEeeecCCccEEEEEECCCeEEEEEcCCCCe
Q 001310          444 VNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV--YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGA  521 (1103)
Q Consensus       444 v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v--~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~  521 (1103)
                      ...+.|+. +.  +.++.+.+|.|+++|+++++.+..+ -. ...  ..+++  . ++.+.+..-.++.+.+||..+.+.
T Consensus        57 tqGL~~~~-~~--Ly~stG~~g~v~~iD~~Tgkv~~~~-l~-~~~FgeGit~--~-g~~Ly~ltw~~~~v~V~D~~Tl~~  128 (268)
T 3nok_A           57 TQGLVFHQ-GH--FFESTGHQGTLRQLSLESAQPVWME-RL-GNIFAEGLAS--D-GERLYQLTWTEGLLFTWSGMPPQR  128 (268)
T ss_dssp             EEEEEEET-TE--EEEEETTTTEEEECCSSCSSCSEEE-EC-TTCCEEEEEE--C-SSCEEEEESSSCEEEEEETTTTEE
T ss_pred             cceEEEEC-CE--EEEEcCCCCEEEEEECCCCcEEeEE-CC-CCcceeEEEE--e-CCEEEEEEccCCEEEEEECCcCcE
Confidence            46788873 44  7788888899999999999999887 22 222  33444  3 234555666789999999999998


Q ss_pred             eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc--cCCceEEEEEcCCCCEEEEEeCC
Q 001310          522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDD  599 (1103)
Q Consensus       522 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~d  599 (1103)
                      ..++......   ..+++|++.|+.+.    +...|+++|..+.+.+..+.....  .-..++.+.|. +|...+....+
T Consensus       129 ~~ti~~~~eG---wGLt~Dg~~L~vSd----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s  200 (268)
T 3nok_A          129 ERTTRYSGEG---WGLCYWNGKLVRSD----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHS  200 (268)
T ss_dssp             EEEEECSSCC---CCEEEETTEEEEEC----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTC
T ss_pred             EEEEeCCCce---eEEecCCCEEEEEC----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCC
Confidence            8877654332   34447788888764    366799999999999888765331  11245667776 66444434468


Q ss_pred             CcEEEEECCCCeeEEEEcCCC-----------CCCCCceEEEecCCCEEEEEEC
Q 001310          600 HVIKIWDMNKVQLLTTIDAGG-----------GLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       600 g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      +.|.+.|..+++.+..+...+           .....+.+|++|+++.|++.+.
T Consensus       201 ~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK  254 (268)
T 3nok_A          201 SDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK  254 (268)
T ss_dssp             SEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred             CeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence            899999999999998886531           1123578999998776666554

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.43  E-value=9.3e-05  Score=80.13  Aligned_cols=267  Identities=10%  Similarity=0.034  Sum_probs=148.2

Q ss_pred             cccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeE--eeccccccceeeeeccCCCccEEEEEECC-
Q 001310          330 LIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKV--WDIGACSMLFKTALVRDPGVSVNRVVWSP-  406 (1103)
Q Consensus       330 l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~h~~~V~~~~~sp-  406 (1103)
                      +.+.-....+++++++|+ ++.++..++.|..||..+++...- ....  +....|..... .........+..+++.+ 
T Consensus        14 ~~g~~~~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~-~~~~~~~~~p~gi~~~~~   90 (322)
T 2fp8_A           14 IEAPSYAPNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVDF-AYASPYWNKAFCENSTD-AEKRPLCGRTYDISYNLQ   90 (322)
T ss_dssp             EECSSSCCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEEE-EESCTTCCHHHHTTCCC-GGGHHHHCCEEEEEEETT
T ss_pred             cCCccCCceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEEE-ecccccccccccccccc-hhccccCCCCceEEEcCC
Confidence            344334678899999998 567788889999999876643210 0000  00000000000 00000113578899998 


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccce-Eecc-ccccEEEEEEec-CCCceEEEEEcC-----------------CCc
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQL-EIDA-HVGNVNDLAFSA-PCKQISVITCGD-----------------DKT  466 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~-~l~~-h~~~v~~~~~s~-d~~~~~l~s~~~-----------------d~~  466 (1103)
                      +|+ |.++...+.|..+|..++.. .... ...+ .......+++.+ +|.  +.++-..                 ++.
T Consensus        91 ~g~-l~v~d~~~~i~~~d~~~g~~-~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~  166 (322)
T 2fp8_A           91 NNQ-LYIVDCYYHLSVVGSEGGHA-TQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGR  166 (322)
T ss_dssp             TTE-EEEEETTTEEEEECTTCEEC-EEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEE
T ss_pred             CCc-EEEEECCCCEEEEeCCCCEE-EEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCce
Confidence            555 55554455588888765532 1111 1111 113468899999 887  4554322                 367


Q ss_pred             eEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEE-EEECCCeEEEEEcCCCC--eeEEecCCCccEEEEEEccCCCE
Q 001310          467 IKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIF-SISVDGKIKAWLYDSLG--ARVDYDAPGLGCTRMAYSANGRR  543 (1103)
Q Consensus       467 i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~-s~~~dg~i~iwd~~~~~--~~~~~~~~~~~i~~~~~s~dg~~  543 (1103)
                      |..||..+++....... ......++++  +++..|+ +-...+.|.++++....  ....+..... ...+++.++|++
T Consensus       167 v~~~d~~~~~~~~~~~~-~~~p~gia~~--~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l  242 (322)
T 2fp8_A          167 LIKYDPSTKETTLLLKE-LHVPGGAEVS--ADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHF  242 (322)
T ss_dssp             EEEEETTTTEEEEEEEE-ESCCCEEEEC--TTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCE
T ss_pred             EEEEeCCCCEEEEeccC-CccCcceEEC--CCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCE
Confidence            88899877764332221 1234556774  4666554 44567899999987532  1111111222 678999999987


Q ss_pred             EEEEecCC------CCceeEEEEeCCCCeeEEEEeccccc-CCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310          544 LFSCGTSK------EGESFLVEWNESEGAIKRTYQGLQLQ-HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1103)
Q Consensus       544 l~~~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  609 (1103)
                      .++.....      ...+.|..+|. .++.+..+...... ...+..+++ .+++.+++....+.|.++++..
T Consensus       243 ~va~~~~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~  313 (322)
T 2fp8_A          243 WVSSSEELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK  313 (322)
T ss_dssp             EEEEEEETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred             EEEecCcccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence            66654310      01356888887 47777777654311 134566666 3454444445677888888753

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.40  E-value=0.00015  Score=73.82  Aligned_cols=207  Identities=8%  Similarity=0.010  Sum_probs=134.4

Q ss_pred             EecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       328 ~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      +.|.+-.+++..++|+|++.+|.++...++.|...|.. |+.+....                 +.+ ....-.+++.++
T Consensus        20 ~~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~   80 (255)
T 3qqz_A           20 KEIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGD   80 (255)
T ss_dssp             EECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECST
T ss_pred             eECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCC
Confidence            46677777999999999887788888889999999988 77665422                 222 256778899999


Q ss_pred             CCEEEEEeCCCeEEEEEecCCCccccceEec------cccccEEEEEEecCCCceEEEEEcCCCceEEEeCC---CCcee
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEID------AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV---TGSRT  478 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~~~~~~l~------~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~---~~~~~  478 (1103)
                      +.++++.-.++.+.++++.....+.......      ........++|+|+++.  |+++.......+|.+.   .+..+
T Consensus        81 g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~--L~va~E~~p~~i~~~~g~~~~~~l  158 (255)
T 3qqz_A           81 NQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHT--FWFFKEKNPIEVYKVNGLLSSNEL  158 (255)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTE--EEEEEESSSEEEEEEESTTCSSCC
T ss_pred             CEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCE--EEEEECcCCceEEEEcccccCCce
Confidence            9887776667889999987654322111111      23345689999999985  3334433333444432   12222


Q ss_pred             EEee-------cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC---------ccEEEEEEccCCC
Q 001310          479 YSFE-------GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG---------LGCTRMAYSANGR  542 (1103)
Q Consensus       479 ~~~~-------~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~---------~~i~~~~~s~dg~  542 (1103)
                      ..+.       .+...+.+++++|. .+++++.....+.+.++|.+.. ....+....         .....|+|.++|+
T Consensus       159 ~i~~~~~~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~  236 (255)
T 3qqz_A          159 HISKDKALQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGN  236 (255)
T ss_dssp             EEEECHHHHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCC
T ss_pred             eeecchhhccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCC
Confidence            2221       12345688899875 4577777888888999987654 433333221         2568999999998


Q ss_pred             EEEEEecCCCCceeEEEEeC
Q 001310          543 RLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      ..+++ .    .+.++.+..
T Consensus       237 lyIvs-E----~n~~y~f~~  251 (255)
T 3qqz_A          237 IYIVS-E----PNRFYRFTP  251 (255)
T ss_dssp             EEEEE-T----TTEEEEEEC
T ss_pred             EEEEc-C----CceEEEEEe
Confidence            66553 2    335666543

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.40  E-value=9.7e-05  Score=79.24  Aligned_cols=229  Identities=14%  Similarity=0.109  Sum_probs=138.3

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCC-ceEEEeCCC
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDK-TIKVWDAVT  474 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~-~i~iwd~~~  474 (1103)
                      .....++|+++|+++++-..++.|..||..++.  ...  + ........+++.++|+  ++++.. .++ .|..+|..+
T Consensus        32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~--~~~--~-~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~  104 (306)
T 2p4o_A           32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ--QIH--A-TVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD  104 (306)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE--EEE--E-ECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred             CCcceEEECCCCCEEEEeCCCCeEEEECCCCce--EEE--E-eCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence            456789999999977776678899999887532  111  1 1234688999999998  444443 332 466778778


Q ss_pred             CceeEEeec-CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE-e-------c--CCCccEEEEEEccCCCE
Q 001310          475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD-Y-------D--APGLGCTRMAYSANGRR  543 (1103)
Q Consensus       475 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-~-------~--~~~~~i~~~~~s~dg~~  543 (1103)
                      ++....... .......++..  .++..+++...++.|.++|......... .       .  ........+  +++++.
T Consensus       105 g~~~~~~~~~~~~~~~g~~~~--~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~  180 (306)
T 2p4o_A          105 GTVETLLTLPDAIFLNGITPL--SDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF  180 (306)
T ss_dssp             SCEEEEEECTTCSCEEEEEES--SSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred             CeEEEEEeCCCccccCccccc--CCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence            775433221 12223344432  2334455544688888888765422111 0       0  111234455  889988


Q ss_pred             EEEEecCCCCceeEEEEeCCC-Cee--EEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310          544 LFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  620 (1103)
                      |+.+..   ..+.|+.+++.. ++.  ...+.. .   .....++++++|+.+++....+.|.+++.. ++.........
T Consensus       181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~-~---~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~  252 (306)
T 2p4o_A          181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVE-Q---TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQ  252 (306)
T ss_dssp             EEEEET---TTTEEEEEEBCTTSCBCCCEEEEE-S---CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGG
T ss_pred             EEEEeC---CCCEEEEEEeCCCCCCCccEEEec-c---CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeeccc
Confidence            877653   356799999864 322  111211 1   235568899999877776678899999975 55533222122


Q ss_pred             CCCCCceEEEe---cCCCEEEEEECCC
Q 001310          621 GLPENPRICFN---KNGTLLAVIANEN  644 (1103)
Q Consensus       621 ~~~~v~~v~~s---~~g~~l~~~~~dg  644 (1103)
                      ......+++|.   |+++.|++.+..+
T Consensus       253 ~~~~p~~~a~~g~~~d~~~LyVt~~~~  279 (306)
T 2p4o_A          253 GVIGSTAVAFGQTEGDCTAIYVVTNGG  279 (306)
T ss_dssp             TCTTEEEEEECCSTTTTTEEEEEECTT
T ss_pred             ccCCceEEEEecccCCCCEEEEECCCC
Confidence            22346889998   8888887776643

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.40  E-value=0.00065  Score=74.03  Aligned_cols=248  Identities=11%  Similarity=-0.010  Sum_probs=153.0

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      +..+|.+..+++. ++++  ....|+..++........                   .. ....+..++|++.+..|..+
T Consensus        34 d~~~C~~~~~~~~-ll~~--~~~~I~~i~~~g~~~~~~-------------------~~-~~~~~~~l~~d~~~~~ly~~   90 (349)
T 3v64_C           34 DRRSCKALGPEPV-LLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFWS   90 (349)
T ss_dssp             TSSCEEESSSCCE-EEEE--CBSCEEEECTTSCCEEEE-------------------EC-SCSCEEEEEEETTTTEEEEE
T ss_pred             CCCcccccccCce-eEee--cccceEEEeCCCCeeEEe-------------------ec-CCCceEEEEEeccccEEEEE
Confidence            4567777777553 4444  235688788765433211                   22 23457899999876666655


Q ss_pred             -eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEe
Q 001310          415 -YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP  493 (1103)
Q Consensus       415 -~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~  493 (1103)
                       ...+.|..+++.++....   .+.........+++.+.+.. +.++-...+.|.+.++........+...-.....+++
T Consensus        91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav  166 (349)
T 3v64_C           91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL  166 (349)
T ss_dssp             ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred             eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence             456789999988754221   12222234578899986664 4555666778999997655443334344456788888


Q ss_pred             eecCCccEEEEEECC-CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEe
Q 001310          494 HAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1103)
                      .+. ++.++++-... +.|...+++.................++++|++..|+.+-.   +.+.|..+|+........+.
T Consensus       167 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~  242 (349)
T 3v64_C          167 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS  242 (349)
T ss_dssp             ETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred             ecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence            653 34455555555 78888887764443333333446789999998888877643   25679999986543333333


Q ss_pred             cccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310          573 GLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       573 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  617 (1103)
                      ...   .....+++ .++..+++-...+.|..++..+|+....+.
T Consensus       243 ~~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          243 QGL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             SSC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             CCC---CCceEEEE-ECCEEEEecCCCCeEEEEEccCCCccEEec
Confidence            222   45667777 344444455567788888876776665554

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.38  E-value=5.9e-05  Score=90.60  Aligned_cols=121  Identities=11%  Similarity=0.168  Sum_probs=76.1

Q ss_pred             EEEEcc-CCCEEEEEecCCCC-------ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEE
Q 001310          534 RMAYSA-NGRRLFSCGTSKEG-------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKI  604 (1103)
Q Consensus       534 ~~~~s~-dg~~l~~~~~~~~~-------~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i  604 (1103)
                      ..++.+ +++.++.++.+.+.       ...+.+||..+++..........+.....++++..++..++.|+ .+..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            456677 88888887754321       23689999988764332211111112334567778899888887 4568999


Q ss_pred             EECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEE-CC-----CeEEEEEcCCCC
Q 001310          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIA-NE-----NRIKILETPESN  655 (1103)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d-----g~i~iw~~~~~~  655 (1103)
                      ||..+.+....-..+.. ..-.+++..++|++++.|+ .+     ..+.+||..+.+
T Consensus       270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99988765543322221 1123566677999999988 34     457788876653

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.38  E-value=9.8e-05  Score=79.21  Aligned_cols=238  Identities=11%  Similarity=0.032  Sum_probs=139.5

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      .+.+..+..+ .....++|+|+|+ ++++...++.|..||..++ ....     +.               ....+..++
T Consensus        22 ~~~~~~~p~~-~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~~-----~~---------------~~~~p~gia   78 (306)
T 2p4o_A           22 AKIITSFPVN-TFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQIH-----AT---------------VEGKVSGLA   78 (306)
T ss_dssp             EEEEEEECTT-CCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEEE-----EE---------------CSSEEEEEE
T ss_pred             ceEeEeCCCC-CCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEEE-----Ee---------------CCCCceeEE
Confidence            4455555444 3778999999998 7777777899999997653 2211     11               124688999


Q ss_pred             ECCCCCEEEEEeCC-C-eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce-eEE
Q 001310          404 WSPDGSLLGVAYSK-H-IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR-TYS  480 (1103)
Q Consensus       404 ~spdg~~las~~~d-~-~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~-~~~  480 (1103)
                      ++++|+++++.... + .|..++..+++.. ....+. .......++..+++.  .+++...++.|.++|..+++. +..
T Consensus        79 ~~~dG~l~vad~~~~~~~v~~~d~~~g~~~-~~~~~~-~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~~  154 (306)
T 2p4o_A           79 FTSNGDLVATGWNADSIPVVSLVKSDGTVE-TLLTLP-DAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWL  154 (306)
T ss_dssp             ECTTSCEEEEEECTTSCEEEEEECTTSCEE-EEEECT-TCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EcCCCcEEEEeccCCcceEEEEcCCCCeEE-EEEeCC-CccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEEE
Confidence            99999976665433 2 4666777776532 111221 122234555555554  555655688899999776532 211


Q ss_pred             ee---------cCCCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCC-CCe--eEEecCCCccEEEEEEccCCCEEEEE
Q 001310          481 FE---------GHGAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDS-LGA--RVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       481 ~~---------~~~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~-~~~--~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      ..         ..-.....+  ++  ++. ++++-...+.|..++++. +..  ...+.. ......++++++|++.++.
T Consensus       155 ~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~-~~~P~gi~vd~dG~l~va~  229 (306)
T 2p4o_A          155 EHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE-QTNIDDFAFDVEGNLYGAT  229 (306)
T ss_dssp             ECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEE-SCCCSSEEEBTTCCEEEEC
T ss_pred             ECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEec-cCCCCCeEECCCCCEEEEe
Confidence            11         111123444  33  344 455556678999999875 221  111111 1234568999999876554


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEc---CCCCEEEEEeCC
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDD  599 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~d  599 (1103)
                      ..    .+.|.++|.. ++......... ......+++|.   ++++.|++++..
T Consensus       230 ~~----~~~V~~~~~~-G~~~~~~~~~~-~~~~p~~~a~~g~~~d~~~LyVt~~~  278 (306)
T 2p4o_A          230 HI----YNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG  278 (306)
T ss_dssp             BT----TCCEEEECTT-CCEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             CC----CCeEEEECCC-CCEEEEeeccc-ccCCceEEEEecccCCCCEEEEECCC
Confidence            32    4559999975 65533211111 12568899998   888888776643

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.37  E-value=0.00087  Score=71.94  Aligned_cols=238  Identities=10%  Similarity=-0.038  Sum_probs=145.0

Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC---CceeE-EeecCC
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT---GSRTY-SFEGHG  485 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~---~~~~~-~~~~~~  485 (1103)
                      +|+.+.. ..|+..|+.+++...   .+ ........++|++++.. ++++-...+.|..+++..   +.... .+...-
T Consensus         3 ~ll~~~~-~~I~~i~~~~~~~~~---~~-~~~~~p~g~~~d~~~~~-ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~   76 (316)
T 1ijq_A            3 YLFFTNR-HEVRKMTLDRSEYTS---LI-PNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (316)
T ss_dssp             EEEEECB-SSEEEEETTSCCCEE---EE-CSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECC-CeEEEEECCCcceEe---hh-cCCCceEEEEEEeCCCE-EEEEECCCCcEEEEECCCCCCCcccEEEEeCCC
Confidence            3444433 458888888765332   22 23456789999987664 455566678999999876   22222 233233


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      .....+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+.+...  ..+.|...++.. 
T Consensus        77 ~~p~glavd~~-~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~--~~~~I~~~~~dG-  152 (316)
T 1ijq_A           77 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNG-  152 (316)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTS-
T ss_pred             CCcCEEEEeec-CCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccC--CCCeEEEEcCCC-
Confidence            44577777543 34555666778899999987655444444344567899999977777665431  135688888753 


Q ss_pred             eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg  644 (1103)
                      .....+....  -.....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus       153 ~~~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~  229 (316)
T 1ijq_A          153 VDIYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  229 (316)
T ss_dssp             CCEEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTT
T ss_pred             CCeEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCC
Confidence            3333332211  25688999999887777655 5678999998754332222222222234577775 355555666678


Q ss_pred             eEEEEEcCCCCeeEec
Q 001310          645 RIKILETPESNSVDAA  660 (1103)
Q Consensus       645 ~i~iw~~~~~~~~~~~  660 (1103)
                      .|..++..+++....+
T Consensus       230 ~V~~~~~~~g~~~~~i  245 (316)
T 1ijq_A          230 AIFSANRLTGSDVNLL  245 (316)
T ss_dssp             EEEEEETTTCCCCEEE
T ss_pred             eEEEEeCCCCcceEEE
Confidence            8988887766555444

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=98.35  E-value=6.9e-05  Score=90.04  Aligned_cols=278  Identities=10%  Similarity=0.032  Sum_probs=154.5

Q ss_pred             EEEecC-CCceEEEEEcCCC-----------cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          339 SMDFHP-VQHTLLLVGTNVG-----------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       339 ~v~~sp-dg~~llasgs~d~-----------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      ++++.| +|+ +++.|+.+.           .+.+||..+++-.....                ....+.....++++.+
T Consensus       190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~----------------~~~~~~~~~~~~~~~~  252 (656)
T 1k3i_A          190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTV----------------TVTKHDMFCPGISMDG  252 (656)
T ss_dssp             EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEE----------------EECSCCCSSCEEEECT
T ss_pred             eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcc----------------cCCCCCCccccccCCC
Confidence            567777 787 677776432           57888888775332100                0122333445678889


Q ss_pred             CCCEEEEEeC-CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEc-CC-----CceEEEeCCCCceeE
Q 001310          407 DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DD-----KTIKVWDAVTGSRTY  479 (1103)
Q Consensus       407 dg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d-----~~i~iwd~~~~~~~~  479 (1103)
                      +|+.+++|+. +..+.+||..+++-.. ...+.... .-.+++..++|+  +++.|+ .+     ..+.+||..+++-..
T Consensus       253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~R-~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~~  328 (656)
T 1k3i_A          253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVAR-GYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWTS  328 (656)
T ss_dssp             TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSCC-SSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEEE
T ss_pred             CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCccc-cccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCccee
Confidence            9999999984 4579999998764221 11111111 113455667888  677777 44     468999988776433


Q ss_pred             EeecCC-Cce----EEEEeeecCCccEEEEEECCC---------eEEEEEcCCCCeeEEecCC---------CccEEEEE
Q 001310          480 SFEGHG-APV----YSLCPHAKENIHFIFSISVDG---------KIKAWLYDSLGARVDYDAP---------GLGCTRMA  536 (1103)
Q Consensus       480 ~~~~~~-~~v----~~~~~~~~~~~~~l~s~~~dg---------~i~iwd~~~~~~~~~~~~~---------~~~i~~~~  536 (1103)
                      . .... .+.    ....+  ..++..++.++.+|         .+..||..+..........         ...-.++.
T Consensus       329 ~-~~~~~~p~~~~~~~~~~--~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~  405 (656)
T 1k3i_A          329 L-PNAKVNPMLTADKQGLY--RSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  405 (656)
T ss_dssp             E-TTSCSGGGCCCCTTGGG--TTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             C-CCcccccccccccccee--ecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence            2 1000 000    00001  12334445554443         4677887766533222111         11223444


Q ss_pred             Ecc-CCCEEEEEecCCC----Cce---eEEEEeCCCCeeEEEE--ecccccCCceEEEEEcCCCCEEEEEeCC-------
Q 001310          537 YSA-NGRRLFSCGTSKE----GES---FLVEWNESEGAIKRTY--QGLQLQHNSVSVVHFDTAKDQILAAGDD-------  599 (1103)
Q Consensus       537 ~s~-dg~~l~~~~~~~~----~~~---~i~iwd~~~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~d-------  599 (1103)
                      |.. +++.+++++.+..    ...   .+.+||..+.......  ....  ...-.+++..|+++.++.|+.+       
T Consensus       406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~--~R~~~~~~~l~~g~i~v~GG~~~~~~~~~  483 (656)
T 1k3i_A          406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYF--ARTFHTSVVLPDGSTFITGGQRRGIPFED  483 (656)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSS--CCBSCEEEECTTSCEEEECCBSBCCTTCC
T ss_pred             ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCC--CcccCCeEECCCCCEEEECCcccCcCcCC
Confidence            543 6777777664221    011   5888998877655443  1111  1223445567899999998754       


Q ss_pred             ----CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          600 ----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       600 ----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                          ..+.+||..+.+....-.............+.|+|+.++.|+.
T Consensus       484 ~~~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~  530 (656)
T 1k3i_A          484 STPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  530 (656)
T ss_dssp             CSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             CCcccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence                5689999988765432222211112234556789999999885

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.34  E-value=0.00083  Score=73.19  Aligned_cols=248  Identities=10%  Similarity=-0.032  Sum_probs=153.2

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  477 (1103)
                      ..+|.+..++ .+|+.+. ...|+..++.+....    .+......+..++|.+.+.. ++++-...+.|..+++..+..
T Consensus        35 ~~~C~~~~~~-~~ll~~~-~~~I~~i~~~g~~~~----~~~~~~~~~~~l~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~  107 (349)
T 3v64_C           35 RRSCKALGPE-PVLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNV  107 (349)
T ss_dssp             SSCEEESSSC-CEEEEEC-BSCEEEECTTSCCEE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSC
T ss_pred             CCcccccccC-ceeEeec-ccceEEEeCCCCeeE----EeecCCCceEEEEEeccccE-EEEEeccCCceEEEecCCCCc
Confidence            3455666663 3454443 344777777664321    12223345789999987664 455556678899999877654


Q ss_pred             eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeE
Q 001310          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFL  557 (1103)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i  557 (1103)
                      ...+.........+++.+. ++.+.++-...+.|.+.+++.................++++|.+..|+......  ...|
T Consensus       108 ~~~~~~~~~~p~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~--~~~I  184 (349)
T 3v64_C          108 EEVVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGN--TPRI  184 (349)
T ss_dssp             EEEECSSCSCCCEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSS--SCEE
T ss_pred             eEEEeCCCCCccEEEEecC-CCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCC--CCEE
Confidence            4444333344567777543 345666666778999999886655444444445678999999777776654311  3678


Q ss_pred             EEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCE
Q 001310          558 VEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTL  636 (1103)
Q Consensus       558 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~  636 (1103)
                      +..++............   ......++++|++..|+.+. ..+.|..+++........+...  ......+++ .++.+
T Consensus       185 ~r~~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~giav-~~~~l  258 (349)
T 3v64_C          185 EASSMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSL  258 (349)
T ss_dssp             EEEETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSS--CSSEEEEEE-ETTEE
T ss_pred             EEEeCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCC--CCCceEEEE-ECCEE
Confidence            88887644332222221   24678999998777776654 5678999998754433333322  223467777 34555


Q ss_pred             EEEEECCCeEEEEEcCCCCeeEecc
Q 001310          637 LAVIANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       637 l~~~~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                      +++-...+.|..++..+++....+.
T Consensus       259 y~td~~~~~V~~~~~~~G~~~~~i~  283 (349)
T 3v64_C          259 YWTDWHTKSINSANKFTGKNQEIIR  283 (349)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEE
T ss_pred             EEecCCCCeEEEEEccCCCccEEec
Confidence            5555567888888866665555444

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.34  E-value=0.00053  Score=75.96  Aligned_cols=248  Identities=11%  Similarity=-0.008  Sum_probs=154.1

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE-
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-  414 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~-  414 (1103)
                      .-.|.+..+++ +++++  ....|+..++.++.....                   .. ....+..++|.+.+..|..+ 
T Consensus        78 ~~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~~-------------------~~-~~~~~~gl~~d~~~~~ly~~D  134 (386)
T 3v65_B           78 RRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTLL-------------------LN-NLENAIALDFHHRRELVFWSD  134 (386)
T ss_dssp             SSCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEEE-------------------EC-SCSCEEEEEEETTTTEEEEEE
T ss_pred             CCeECCccccc-eeEee--cCccceeeccCCCcEEEE-------------------ec-CCCccEEEEEecCCCeEEEEe
Confidence            45576776754 34443  236788888876543321                   11 23457899999866666555 


Q ss_pred             eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1103)
                      ...+.|..+++.++....   .+.........+++.+.+.. +.++-...+.|.+.++........+.........+++.
T Consensus       135 ~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavd  210 (386)
T 3v65_B          135 VTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALH  210 (386)
T ss_dssp             TTTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEE
T ss_pred             CCCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEE
Confidence            456789999988754211   12222234567899886664 45555667789888876554433444444567888886


Q ss_pred             ecCCccEEEEEECC-CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec
Q 001310          495 AKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG  573 (1103)
Q Consensus       495 ~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~  573 (1103)
                      +. ++.++++-... +.|...+++.................++++|++..|+.+-.   ..+.|..+|+........+..
T Consensus       211 p~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~  286 (386)
T 3v65_B          211 PM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQ  286 (386)
T ss_dssp             TT-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECS
T ss_pred             cC-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEEC
Confidence            53 34445554445 78888888765554444444456789999998888877643   256799999865433333332


Q ss_pred             ccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310          574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       574 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                      ..   .....+++ ..+..+++-...+.|..++..+|+....+..
T Consensus       287 ~~---~~P~giav-~~~~ly~td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          287 GL---PHPFAITV-FEDSLYWTDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             SC---SSEEEEEE-ETTEEEEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             CC---CCceEEEE-ECCEEEEeeCCCCeEEEEECCCCcceEEEcc
Confidence            22   45677777 3444455555778888888777776666653

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.33  E-value=0.00051  Score=76.12  Aligned_cols=247  Identities=11%  Similarity=-0.037  Sum_probs=153.6

Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      .|.+..+ ..+|+.+. ...|+..++.++...    .+......+..++|.+.+.. ++++-...+.|..+++..+....
T Consensus        80 ~C~~~~~-~~~l~~~~-~~~I~~i~~~~~~~~----~~~~~~~~~~gl~~d~~~~~-ly~~D~~~~~I~r~~~~g~~~~~  152 (386)
T 3v65_B           80 SCKALGP-EPVLLFAN-RIDIRQVLPHRSEYT----LLLNNLENAIALDFHHRREL-VFWSDVTLDRILRANLNGSNVEE  152 (386)
T ss_dssp             CEEECSS-CCEEEEEC-BSCEEEECTTSCCCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCCEEE
T ss_pred             eECCccc-cceeEeec-CccceeeccCCCcEE----EEecCCCccEEEEEecCCCe-EEEEeCCCCcEEEEecCCCCcEE
Confidence            3455555 34454443 345888888765422    22223345789999987664 45555667889999987765444


Q ss_pred             EeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          480 SFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       480 ~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      .+.........+++.+. ++.+.++-...+.|.+.+++.................+++.|.+..|+.+-..  ....|+.
T Consensus       153 ~~~~~~~~p~glavd~~-~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~--~~~~I~r  229 (386)
T 3v65_B          153 VVSTGLESPGGLAVDWV-HDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWG--NTPRIEA  229 (386)
T ss_dssp             EECSSCSCCCCEEEETT-TTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECS--SSCEEEE
T ss_pred             EEeCCCCCccEEEEEeC-CCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccC--CCCEEEE
Confidence            44333334566777543 34556666677889988887655444444444567899999988777766432  1367888


Q ss_pred             EeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE
Q 001310          560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA  638 (1103)
Q Consensus       560 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~  638 (1103)
                      +++.............   .....++++|++..|+.+. ..+.|..+|+........+...  ......+++ .++.+++
T Consensus       230 ~~~dG~~~~~~~~~~~---~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~--~~~P~giav-~~~~ly~  303 (386)
T 3v65_B          230 SSMDGSGRRIIADTHL---FWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQG--LPHPFAITV-FEDSLYW  303 (386)
T ss_dssp             EETTSCSCEEEECSSC---SCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSS--CSSEEEEEE-ETTEEEE
T ss_pred             EeCCCCCcEEEEECCC---CCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECC--CCCceEEEE-ECCEEEE
Confidence            8876543333332222   4578999998777776654 5678999998754433333322  233467777 3455566


Q ss_pred             EEECCCeEEEEEcCCCCeeEeccc
Q 001310          639 VIANENRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       639 ~~~~dg~i~iw~~~~~~~~~~~~~  662 (1103)
                      +-...+.|..++..+++....+..
T Consensus       304 td~~~~~V~~~~~~~G~~~~~i~~  327 (386)
T 3v65_B          304 TDWHTKSINSANKFTGKNQEIIRN  327 (386)
T ss_dssp             EETTTTEEEEEETTTCCSCEEEEC
T ss_pred             eeCCCCeEEEEECCCCcceEEEcc
Confidence            666678888888766665555543

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.32  E-value=0.0023  Score=68.94  Aligned_cols=235  Identities=9%  Similarity=0.037  Sum_probs=130.5

Q ss_pred             CCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEec---CCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001310          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIM---PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1103)
                      ...+.++++++ +..++++..+.|.. ....|+.-....   .....+..+++.+ +++.++++ .+|.|+. ..+.|+.
T Consensus        79 ~~~~~~i~~~~-~~~~~~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~-~~~~~~~~-~~g~v~~-S~DgG~t  153 (327)
T 2xbg_A           79 DYRFNSVSFQG-NEGWIVGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALG-NGSAEMIT-NVGAIYR-TKDSGKN  153 (327)
T ss_dssp             CCEEEEEEEET-TEEEEEEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEE-TTEEEEEE-TTCCEEE-ESSTTSS
T ss_pred             CccEEEEEecC-CeEEEEECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEEC-CCCEEEEe-CCccEEE-EcCCCCC
Confidence            44678899986 55666665664433 222233322222   2234577888876 66666655 4564432 2222332


Q ss_pred             E-EEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCC
Q 001310          879 I-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET  957 (1103)
Q Consensus       879 ~-~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~  957 (1103)
                      - .....+...+..+++.+++.+++.+...+..+-+|-. +..  ...+....     ...+..++++++++.++++.+|
T Consensus       154 W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~g-G~t--W~~~~~~~-----~~~~~~~~~~~~g~~~~~~~~G  225 (327)
T 2xbg_A          154 WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPG-QTA--WEPHNRTT-----SRRLHNMGFTPDGRLWMIVNGG  225 (327)
T ss_dssp             EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTT-CSS--CEEEECCS-----SSCEEEEEECTTSCEEEEETTT
T ss_pred             CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCC-CCc--eeECCCCC-----CCccceeEECCCCCEEEEeCCc
Confidence            2 2223456678999999999888766444433333321 221  11121111     1257889999999988888888


Q ss_pred             eEEEEECCCceEEEEeeCC---CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeE
Q 001310          958 HLAIYEAEELTCLKQWFPI---SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCF 1034 (1103)
Q Consensus       958 ~v~iwd~~~~~~~~~~~~~---h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1034 (1103)
                      .+++.+.+.|+.-.....+   +...+..+.+.+++..++++ .+|.| .+..+.|+.-..+....  +           
T Consensus       226 ~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g-~~g~i-~~S~DgG~tW~~~~~~~--~-----------  290 (327)
T 2xbg_A          226 KIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAG-GAGAL-LCSQDGGQTWQQDVDVK--K-----------  290 (327)
T ss_dssp             EEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEE-STTCE-EEESSTTSSCEECGGGT--T-----------
T ss_pred             eEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEe-CCCeE-EEeCCCCcccEEcCccC--C-----------
Confidence            8887754445443332222   23468899999888877765 57766 45556564332222000  0           


Q ss_pred             eeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1035 CYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1035 ~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                         ....++.  +.+.+  +..+++++.+|.|.-++-
T Consensus       291 ---~~~~~~~--v~~~~--~~~~~~~G~~G~i~~~~~  320 (327)
T 2xbg_A          291 ---VPSNFYK--ILFFS--PDQGFILGQKGILLRYVT  320 (327)
T ss_dssp             ---SSSCCCE--EEEEE--TTEEEEECSTTEEEEECC
T ss_pred             ---CCCCeEE--EEEEC--CCceEEEcCCceEEEEcC
Confidence               1122443  33432  356777888997765543

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.31  E-value=0.00017  Score=71.98  Aligned_cols=188  Identities=13%  Similarity=0.107  Sum_probs=125.0

Q ss_pred             CCccEEEEEECCCCCEEEEEeCC--CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310          395 PGVSVNRVVWSPDGSLLGVAYSK--HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~~d--~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      ...-...+.|++ +.+..+.+.+  ..|+++|+.+++.+... .+..+   ........++.. +.+..-.++.+.++|.
T Consensus        19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~-~l~~~---~fgeGi~~~~~~-ly~ltw~~~~v~v~D~   92 (243)
T 3mbr_X           19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRA-EVPPP---YFGAGIVAWRDR-LIQLTWRNHEGFVYDL   92 (243)
T ss_dssp             TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEE-ECCTT---CCEEEEEEETTE-EEEEESSSSEEEEEET
T ss_pred             CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEE-eCCCC---cceeEEEEeCCE-EEEEEeeCCEEEEEEC
Confidence            345677899986 5555665554  48999999999866533 22222   222223334554 3444567889999999


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCC-----ccEEEEEEccCCCEEEEE
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPG-----LGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-----~~i~~~~~s~dg~~l~~~  547 (1103)
                      ++.+.+.++..... -..++.    ++..|+.+..++.|.++|..+.+....+....     ..++.+.+. +|+..+..
T Consensus        93 ~tl~~~~ti~~~~~-Gwglt~----dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanv  166 (243)
T 3mbr_X           93 ATLTPRARFRYPGE-GWALTS----DDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANV  166 (243)
T ss_dssp             TTTEEEEEEECSSC-CCEEEE----CSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEE
T ss_pred             CcCcEEEEEeCCCC-ceEEee----CCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEE
Confidence            99999999875432 244443    44556666678999999999888776654422     234556654 66544433


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEeccc----------ccCCceEEEEEcCCCCEEEEEeC
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQ----------LQHNSVSVVHFDTAKDQILAAGD  598 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~~  598 (1103)
                      -.    ...|.+.|..+|+.+..+....          ......+.++++|+++.|+..+.
T Consensus       167 w~----s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK  223 (243)
T 3mbr_X          167 WL----TSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK  223 (243)
T ss_dssp             TT----TTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred             CC----CCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence            22    3469999999999998876431          12346799999999888888774

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.28  E-value=0.00087  Score=68.12  Aligned_cols=217  Identities=12%  Similarity=0.098  Sum_probs=133.6

Q ss_pred             EecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-CCCCEEEEEEccCCCEEEEEeCCCeEEEEEcC
Q 001310          838 TIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-HSKRVTGLVFSDALNILVSSGGDAQIFVWDVD  916 (1103)
Q Consensus       838 ~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~  916 (1103)
                      .+.+-...+..++++|+++.++++...++.|...|.. ++.+..+.- -......|++.+++.++++.-.++.+.++++.
T Consensus        21 ~l~g~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~   99 (255)
T 3qqz_A           21 EIAGITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLT   99 (255)
T ss_dssp             ECTTCCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEEC
T ss_pred             ECCCcccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcC
Confidence            4555556899999999556677778889999999998 887777632 22457889999999877776677889999987


Q ss_pred             CCce-eeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCC--eEEEEEC-CCceEEEEe------eCCCCcCeEEEE
Q 001310          917 GWGI-QTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET--HLAIYEA-EELTCLKQW------FPISSVPISQAT  985 (1103)
Q Consensus       917 ~~~~-~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~--~v~iwd~-~~~~~~~~~------~~~h~~~v~~l~  985 (1103)
                      .... ..........+..........++|+|+++.|.++ ...  .|+.|+- .....+...      ...+-..+.+++
T Consensus       100 ~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~  179 (255)
T 3qqz_A          100 PNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAE  179 (255)
T ss_dssp             TTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEE
T ss_pred             CCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEE
Confidence            6542 1112222111111222357999999999777765 333  4555551 011111111      012344678999


Q ss_pred             EccCCC-EEEEEecCCcEEEEeCCCceeEEeecccc-ccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecC
Q 001310          986 FSCDCR-MVFTSFVDGTLSIHEASNLEVQCRILSTA-YLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTN 1063 (1103)
Q Consensus       986 fs~dg~-~l~t~~~dg~v~vWd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d 1063 (1103)
                      |.|... +++.+.....+.++|... +.+..+.... ..+..             ..--.+=.++++|+ |++.+ +++.
T Consensus       180 ~dp~tg~lliLS~~s~~L~~~d~~g-~~~~~~~L~~g~~~l~-------------~~~~qpEGia~d~~-G~lyI-vsE~  243 (255)
T 3qqz_A          180 FNQQKNTLLVLSHESRALQEVTLVG-EVIGEMSLTKGSRGLS-------------HNIKQAEGVAMDAS-GNIYI-VSEP  243 (255)
T ss_dssp             EETTTTEEEEEETTTTEEEEECTTC-CEEEEEECSTTGGGCS-------------SCCCSEEEEEECTT-CCEEE-EETT
T ss_pred             EcCCCCeEEEEECCCCeEEEEcCCC-CEEEEEEcCCccCCcc-------------cccCCCCeeEECCC-CCEEE-EcCC
Confidence            998654 555566778899999774 4554444221 11100             00122457889998 76544 4788


Q ss_pred             CcEEEEcc
Q 001310         1064 GEVYVIEP 1071 (1103)
Q Consensus      1064 g~v~vw~~ 1071 (1103)
                      +.+.+++.
T Consensus       244 n~~y~f~~  251 (255)
T 3qqz_A          244 NRFYRFTP  251 (255)
T ss_dssp             TEEEEEEC
T ss_pred             ceEEEEEe
Confidence            86666654

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.26  E-value=0.0015  Score=72.54  Aligned_cols=249  Identities=9%  Similarity=-0.033  Sum_probs=154.2

Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC----ceeEEeecCC
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  485 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~  485 (1103)
                      +|+.+ ....|+..++.+....    .+......+..++|++.+.. ++++-...+.|+.+++...    .....+....
T Consensus        85 ~ll~~-~~~~I~~i~l~~~~~~----~~~~~~~~~~~l~~d~~~~~-lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~  158 (400)
T 3p5b_L           85 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  158 (400)
T ss_dssp             EEEEE-ETTEEEEECTTSCSCE----EEECSCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC------CCCEEEECSSC
T ss_pred             eeEEe-ccceeEEEccCCccee----EeccccCcceEEeeeeccCc-eEEEecCCCeEEEEEcccCCCCCcceEEEeCCC
Confidence            44444 3467888888765422    22334557889999987664 4455556778999997652    2233333344


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      .....+++.+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-..  ....|+..++...
T Consensus       159 ~~p~glavD~~-~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~--~~~~I~~~~~dG~  235 (400)
T 3p5b_L          159 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  235 (400)
T ss_dssp             SCEEEEEEETT-TTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECS--SSCCEEEEETTSC
T ss_pred             CCcccEEEEec-CCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCC--CCCEEEEEeCCCC
Confidence            56778888643 34566666678899999988766555554445567899999977777665421  1356888887654


Q ss_pred             eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg  644 (1103)
                      .........-   .....+++++++..|+.+. ..+.|..+|+....................+++. .+.++++-...+
T Consensus       236 ~~~~~~~~~l---~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~  311 (400)
T 3p5b_L          236 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINE  311 (400)
T ss_dssp             SCEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSC
T ss_pred             ccEEEEECCC---CceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCC
Confidence            4333333222   5688999998888887764 5678999998765444444332222334566663 344555556678


Q ss_pred             eEEEEEcCCCCeeEeccccccceeeeE
Q 001310          645 RIKILETPESNSVDAAGVLSDNLRKLS  671 (1103)
Q Consensus       645 ~i~iw~~~~~~~~~~~~~~~~~i~~~~  671 (1103)
                      .|..++..+++.+..+.........+.
T Consensus       312 ~V~~~~~~~G~~~~~i~~~~~~p~~i~  338 (400)
T 3p5b_L          312 AIFSANRLTGSDVNLLAENLLSPEDMV  338 (400)
T ss_dssp             SEEEEESSSCCCCEEEECSCSCEEEEE
T ss_pred             eEEEEEcCCCCceEEEecCCCCCceEE
Confidence            888888777766655543333333333

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.25  E-value=0.00024  Score=79.83  Aligned_cols=248  Identities=12%  Similarity=0.034  Sum_probs=143.3

Q ss_pred             CCeeEEEEec-CCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeC-CC----eEEEEEcCC
Q 001310          803 EAVPCFALSK-NDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD-DS----TILIYNARS  875 (1103)
Q Consensus       803 ~~v~~l~~s~-d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~-dg----~v~iwd~~~  875 (1103)
                      .....++++| ++..|.++. .+.|+.+|..++.... +.........++|++ ++++|+++.. ++    .+.+.+. .
T Consensus       137 ~~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~-~~~~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~~-~  213 (430)
T 3tc9_A          137 GGAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST-VYSGLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILTR-E  213 (430)
T ss_dssp             SCCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE-EECCCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEEG-G
T ss_pred             CCCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE-EecCCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEeC-C
Confidence            3567899998 455555554 4789999998765443 333556788999999 7875555554 22    3444443 3


Q ss_pred             ceeE--EEeccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEE
Q 001310          876 SEVI--SKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL  952 (1103)
Q Consensus       876 ~~~~--~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~  952 (1103)
                      +...  ..+.. ......++++| +|.++++-..++.|..++.+++....  .......     .....++|+|+|++|.
T Consensus       214 g~~~~~~~l~~-~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~-----~~P~gia~~pdG~~ly  285 (430)
T 3tc9_A          214 SGFKVITELTK-GQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS-----GWEFHIQFHPSGNYAY  285 (430)
T ss_dssp             GTSCSEEEEEE-CSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS-----SCCEEEEECTTSSEEE
T ss_pred             Cceeeeeeecc-CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC-----CcceeEEEcCCCCEEE
Confidence            3221  22221 23356788999 77777776678899999998765322  1222111     2467999999999766


Q ss_pred             EE--eCCeEEEEECCC--ceE--EEEeeC--C---C---------CcCeE-EEEEc--------cCCCEEEEEecCCcEE
Q 001310          953 LV--HETHLAIYEAEE--LTC--LKQWFP--I---S---------SVPIS-QATFS--------CDCRMVFTSFVDGTLS 1003 (1103)
Q Consensus       953 ~~--~d~~v~iwd~~~--~~~--~~~~~~--~---h---------~~~v~-~l~fs--------~dg~~l~t~~~dg~v~ 1003 (1103)
                      ++  ..+.|..++.+.  +..  +..+..  +   .         -.... .++..        ++|.++++=...+.|+
T Consensus       286 v~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~  365 (430)
T 3tc9_A          286 IVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIR  365 (430)
T ss_dssp             EEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEE
T ss_pred             EEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEE
Confidence            64  567899987653  322  111111  0   0         01122 44443        3455555555667888


Q ss_pred             EEeCCCceeEEeeccc--cccC--CC-CCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1004 IHEASNLEVQCRILST--AYLR--PT-TSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1004 vWd~~~~~~~~~~~~~--~~~~--~~-~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      .++ .+|.........  .+..  ++ ..         ....--.+..++++|+++.++++-...+.|+.+++
T Consensus       366 ~i~-~~G~v~~~~g~g~~~~~G~~dG~~~---------~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  428 (430)
T 3tc9_A          366 ILT-PQGRVTTFAGRGSNGTSGYNDGDLR---------QEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY  428 (430)
T ss_dssp             EEC-TTSEEEEEEECCTTSSSSCBCEETT---------TTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             EEC-CCCcEEEEEeCCCCCCCcccCCCch---------hhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence            888 456544333210  0000  00 00         00001246788999865777777777778888776

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.23  E-value=0.0019  Score=69.35  Aligned_cols=232  Identities=9%  Similarity=-0.062  Sum_probs=139.4

Q ss_pred             CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE-eCCCeEEEEEecCC---Cccc
Q 001310          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGG---SDAR  432 (1103)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~-~~d~~i~iwd~~~~---~~~~  432 (1103)
                      ..|+..|+.+++....                   . ..-..+..++|++++..|..+ ...+.|..+++.+.   ....
T Consensus        10 ~~I~~i~~~~~~~~~~-------------------~-~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~   69 (316)
T 1ijq_A           10 HEVRKMTLDRSEYTSL-------------------I-PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD   69 (316)
T ss_dssp             SSEEEEETTSCCCEEE-------------------E-CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CE
T ss_pred             CeEEEEECCCcceEeh-------------------h-cCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccE
Confidence            5688889887654321                   1 123567899999976666555 45688999998762   2111


Q ss_pred             cceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECC-CeE
Q 001310          433 QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKI  511 (1103)
Q Consensus       433 ~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i  511 (1103)
                      .  .+.........+++.+.+.. +.++-...+.|.+.|+........+.........+++.+. ++.++++.... +.|
T Consensus        70 ~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~~I  145 (316)
T 1ijq_A           70 T--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKI  145 (316)
T ss_dssp             E--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEE
T ss_pred             E--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCCeE
Confidence            1  12222234678999876654 4555566789999997654433333334456788888653 33344444333 688


Q ss_pred             EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCC
Q 001310          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1103)
Q Consensus       512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  591 (1103)
                      ...+++...........-.....+++++++..|+.+-.   ....|..+|...... +.+............+++. .+.
T Consensus       146 ~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~-~~~~~~~~~~~~P~giav~-~~~  220 (316)
T 1ijq_A          146 KKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNR-KTILEDEKRLAHPFSLAVF-EDK  220 (316)
T ss_dssp             EEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSC-EEEEECTTTTSSEEEEEEE-TTE
T ss_pred             EEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCce-EEEeecCCccCCcEEEEEE-CCE
Confidence            88887654443333334456789999998888877643   255799999874333 3332211012345677774 344


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEc
Q 001310          592 QILAAGDDHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       592 ~l~~~~~dg~i~iwd~~~~~~~~~~~  617 (1103)
                      .+++-...+.|..++..+++.+..+.
T Consensus       221 ly~~d~~~~~V~~~~~~~g~~~~~i~  246 (316)
T 1ijq_A          221 VFWTDIINEAIFSANRLTGSDVNLLA  246 (316)
T ss_dssp             EEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCcceEEEe
Confidence            44455567788888887776555553

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.20  E-value=0.0002  Score=87.21  Aligned_cols=202  Identities=6%  Similarity=-0.027  Sum_probs=114.5

Q ss_pred             cCCCc-cEEEEEEC-CCCCEEEEEeC-C----CeEEEEEecCC-CccccceEeccccccEEEEEEecCCCceEEEEEcCC
Q 001310          393 RDPGV-SVNRVVWS-PDGSLLGVAYS-K----HIVQLYAYHGG-SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD  464 (1103)
Q Consensus       393 ~~h~~-~V~~~~~s-pdg~~las~~~-d----~~i~iwd~~~~-~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d  464 (1103)
                      .+|.. .+...+|| |||++||.+.. +    .+|+++|+.++ +.+..  .+.   .....++|+|||+.  |+....|
T Consensus       169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~---~~~~~~~WspDg~~--l~y~~~d  241 (751)
T 2xe4_A          169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVS---GTNGEIVWGPDHTS--LFYVTKD  241 (751)
T ss_dssp             TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEE---EECSCCEECSSTTE--EEEEEEC
T ss_pred             cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--ccc---CceeeEEEecCCCE--EEEEEEC
Confidence            34554 78899999 99999997643 2    25999999998 63321  111   12457899999985  4433333


Q ss_pred             -----CceEEEeCCCCcee--EEeec-CCCceEEEEeeecCCccEEEEEEC---CCeEEEEEcCCCC-ee--EEec-CCC
Q 001310          465 -----KTIKVWDAVTGSRT--YSFEG-HGAPVYSLCPHAKENIHFIFSISV---DGKIKAWLYDSLG-AR--VDYD-APG  529 (1103)
Q Consensus       465 -----~~i~iwd~~~~~~~--~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---dg~i~iwd~~~~~-~~--~~~~-~~~  529 (1103)
                           ..|+++++.++...  ..+.. .......+.+  ++||++|+..+.   ...|.++|+.++. ..  ..+. ...
T Consensus       242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~--SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~  319 (751)
T 2xe4_A          242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYK--AADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK  319 (751)
T ss_dssp             TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEE--CTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred             CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEE--CCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence                 25888898877532  33332 2233445555  567777776553   3357888887753 22  2222 223


Q ss_pred             ccEEEEEEccCCCEEEEEecCC-CCceeEEEEeCCCC-eeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCc--EEE
Q 001310          530 LGCTRMAYSANGRRLFSCGTSK-EGESFLVEWNESEG-AIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHV--IKI  604 (1103)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~--i~i  604 (1103)
                      ....++.|+ +|..|+..+... .+...|+.+|+.++ +....+..+. ....+..+.+.  ++.| ++...++.  |++
T Consensus       320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~-~~~~l~~~~~~--~~~lv~~~~~~g~~~l~~  395 (751)
T 2xe4_A          320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHS-EDVFMESIAVR--SNYLVVAGRRAGLTRIWT  395 (751)
T ss_dssp             TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCC-SSEEEEEEEEC--SSEEEEEEEETTEEEEEE
T ss_pred             CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCC-CCcEEEEEEEE--CCEEEEEEEeCCEEEEEE
Confidence            344444443 366666555432 34667888998753 2222022222 01245555554  4444 45666775  455


Q ss_pred             EEC
Q 001310          605 WDM  607 (1103)
Q Consensus       605 wd~  607 (1103)
                      +++
T Consensus       396 ~dl  398 (751)
T 2xe4_A          396 MMA  398 (751)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            565

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.15  E-value=0.00066  Score=76.24  Aligned_cols=253  Identities=11%  Similarity=0.017  Sum_probs=144.8

Q ss_pred             CCeeEEEEecC--CCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCC---C-eEEEEEcCC
Q 001310          803 EAVPCFALSKN--DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDD---S-TILIYNARS  875 (1103)
Q Consensus       803 ~~v~~l~~s~d--~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~d---g-~v~iwd~~~  875 (1103)
                      .....++++|+  +..|..+. .+.|+.+|..+++.... .........+++++ +++++++....   . .+...+...
T Consensus       139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~-~~~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~  216 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIK-TTNIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRAS  216 (433)
T ss_dssp             SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEE-CCCCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGG
T ss_pred             CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEe-ecCCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCC
Confidence            34678999985  34444443 48899999987766543 33556789999999 77744443321   1 233333222


Q ss_pred             cee-EEEeccCCCCEEEEEEcc-CCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE
Q 001310          876 SEV-ISKLEGHSKRVTGLVFSD-ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1103)
Q Consensus       876 ~~~-~~~l~~h~~~V~~l~~s~-dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  953 (1103)
                      +.. ...+. .-.....++++| +|.++++-..++.|+.+|..++..... ......  .   .....++|+|+|++|.+
T Consensus       217 ~~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~-~~~~~~--~---~~~~~ia~dpdG~~LYv  289 (433)
T 4hw6_A          217 GFTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEE-EVMMDT--K---GSNFHIVWHPTGDWAYI  289 (433)
T ss_dssp             TTCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEE-EEECSC--C---SSCEEEEECTTSSEEEE
T ss_pred             Ceecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEE-EeccCC--C---CCcccEEEeCCCCEEEE
Confidence            111 01121 223356688999 777776666778899999987664221 111111  1   13457999999997766


Q ss_pred             E--eCCeEEEEECC--CceEE--EEeeC--C------------CCcCeEEEEE---------ccCCCEEEEEecCCcEEE
Q 001310          954 V--HETHLAIYEAE--ELTCL--KQWFP--I------------SSVPISQATF---------SCDCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus       954 ~--~d~~v~iwd~~--~~~~~--~~~~~--~------------h~~~v~~l~f---------s~dg~~l~t~~~dg~v~v 1004 (1103)
                      +  ..+.|+.++.+  ++...  ..+..  +            .-.....+++         .++|.++++-...+.|+.
T Consensus       290 ad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~  369 (433)
T 4hw6_A          290 IYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRV  369 (433)
T ss_dssp             EETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEE
T ss_pred             EeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEE
Confidence            5  56789998865  33211  11111  0            0123567899         677777776667788999


Q ss_pred             EeCCCceeEEeecccccc-CCCCCCCceeeEeeccC-CceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1005 HEASNLEVQCRILSTAYL-RPTTSHDKILCFCYCSC-LHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1005 Wd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      ++. +|....... .... ..+... ..    .... .--++..++++|.++.++++-...+.|+.+++
T Consensus       370 ~~~-~G~v~t~~G-~g~~~~~G~~d-G~----~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~  431 (433)
T 4hw6_A          370 LTP-EGRVTTYAG-RGNSREWGYVD-GE----LRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAP  431 (433)
T ss_dssp             ECT-TSEEEEEEC-CCTTCSSCCBC-EE----TTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred             ECC-CCCEEEEEe-CCCCCccccCC-Cc----cccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEec
Confidence            985 565432222 1100 000000 00    0000 11236788888655888877777788888876

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=98.11  E-value=0.0064  Score=65.46  Aligned_cols=280  Identities=11%  Similarity=0.037  Sum_probs=146.9

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ..+.+|.|.+++. ++++|. ++.| +.....|+.=.....               ........+.+++|++ +..++ +
T Consensus        36 ~~~~~v~~~~~~~-~~~~G~-~g~i-~~s~DgG~tW~~~~~---------------~~~~~~~~~~~i~~~~-~~~~~-~   95 (327)
T 2xbg_A           36 ATILDMSFIDRHH-GWLVGV-NATL-METRDGGQTWEPRTL---------------VLDHSDYRFNSVSFQG-NEGWI-V   95 (327)
T ss_dssp             SCEEEEEESSSSC-EEEEET-TTEE-EEESSTTSSCEECCC---------------CCSCCCCEEEEEEEET-TEEEE-E
T ss_pred             CcEEEEEECCCCc-EEEEcC-CCeE-EEeCCCCCCCeECCC---------------CCCCCCccEEEEEecC-CeEEE-E
Confidence            4799999988887 566654 4544 333344431110000               0112345788999986 44444 4


Q ss_pred             eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe-ecCCCceEEEEe
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCP  493 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~~~~~v~~~~~  493 (1103)
                      +..+.|.. ....|+..........+...+..+.+.+++.  +++.+ .++.|..- .+.|+.-... ......+..+++
T Consensus        96 g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~-~~g~v~~S-~DgG~tW~~~~~~~~~~~~~~~~  170 (327)
T 2xbg_A           96 GEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMIT-NVGAIYRT-KDSGKNWQALVQEAIGVMRNLNR  170 (327)
T ss_dssp             EETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEE-TTCCEEEE-SSTTSSEEEEECSCCCCEEEEEE
T ss_pred             ECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEe-CCccEEEE-cCCCCCCEEeecCCCcceEEEEE
Confidence            45664432 3334443332111112334577888877776  45554 45554332 2334333222 344567788877


Q ss_pred             eecCCccEEEEEECCCeE-EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEe
Q 001310          494 HAKENIHFIFSISVDGKI-KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQ  572 (1103)
Q Consensus       494 ~~~~~~~~l~s~~~dg~i-~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~  572 (1103)
                      .+  ++.+++.+ .+|.+ +-+|-....-..........+..+++.++++.++.+.     .+.+++.+...++.-..+.
T Consensus       171 ~~--~~~~~~~g-~~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~~~  242 (327)
T 2xbg_A          171 SP--SGEYVAVS-SRGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGELL  242 (327)
T ss_dssp             CT--TSCEEEEE-TTSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECCCB
T ss_pred             cC--CCcEEEEE-CCCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEecc
Confidence            54  55566555 44444 3333211111111223345788899999988776553     3346665423233332222


Q ss_pred             cc-cccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-CCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310          573 GL-QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1103)
Q Consensus       573 ~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~  650 (1103)
                      .. ......+..+.+.+++..+++ +.+|.| .+..+.|+.-..+... .....+..+.|.+++ .+++++.+|.|.-++
T Consensus       243 ~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~~~  319 (327)
T 2xbg_A          243 SPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLRYV  319 (327)
T ss_dssp             CTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEEEC
T ss_pred             CCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEEEc
Confidence            11 101235888999887665554 456776 4555556555544422 112347889898655 466667788776654

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.06  E-value=0.0013  Score=73.96  Aligned_cols=243  Identities=6%  Similarity=-0.011  Sum_probs=136.5

Q ss_pred             cEEEEEEec-CCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCC
Q 001310          736 KISRLTYNN-GGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKND  814 (1103)
Q Consensus       736 ~i~~~~~s~-~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~  814 (1103)
                      ....++++| ++..|.++...+.|+.++......                      ....     ........++++++|
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v----------------------~~~~-----~~~~~P~~ia~d~~G  190 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYV----------------------STVY-----SGLSKVRTICWTHEA  190 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEE----------------------EEEE-----CCCSCEEEEEECTTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEE----------------------EEEe-----cCCCCcceEEEeCCC
Confidence            345788997 455566665556666666443211                      1110     133457889999999


Q ss_pred             CEEEEEcC--C----eEEEEEcCCceee--EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-C
Q 001310          815 AYLFSASG--G----VISLYIVMTFKTI--LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-H  885 (1103)
Q Consensus       815 ~~l~~~~d--g----~i~iwd~~~~~~~--~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-h  885 (1103)
                      ++|.++..  +    .+..++. .+...  ..+. .......++++|+++.++++-..++.|+.++..++........ .
T Consensus       191 ~~lyvad~~~~~~~~~v~~~~~-~g~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~  268 (430)
T 3tc9_A          191 DSMIITNDQNNNDRPNNYILTR-ESGFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQD  268 (430)
T ss_dssp             SEEEEEECCSCTTSEEEEEEEG-GGTSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSS
T ss_pred             CEEEEEeCCCCcccceEEEEeC-CCceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCC
Confidence            96666642  2    2333443 33222  2222 1234567889996666666666788999999987664222221 2


Q ss_pred             CCCEEEEEEccCCCE-EEEEeCCCeEEEEEcCC--CceeeeeeeecCCCcccC---------CCCce-EEEEc-------
Q 001310          886 SKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDG--WGIQTCRSLQTPDGVMTL---------APSET-HIQFH-------  945 (1103)
Q Consensus       886 ~~~V~~l~~s~dg~~-l~s~s~dg~I~iwd~~~--~~~~~~~~~~~~~~~~~~---------~~~v~-~l~fs-------  945 (1103)
                      ......++|+|+|++ +++-...+.|..++.+.  ++......+....+....         -.... .++..       
T Consensus       269 ~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~  348 (430)
T 3tc9_A          269 SGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGS  348 (430)
T ss_dssp             SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTS
T ss_pred             CCcceeEEEcCCCCEEEEEECCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEcccccccc
Confidence            234678999999995 45555678899988764  222111111111010000         01233 45553       


Q ss_pred             -CCCCEEEE-EeCCeEEEEECCCceEEEEeeC------C--C--------CcCeEEEEEccC-CCEEEEEecCCcEEEEe
Q 001310          946 -KDQTRFLL-VHETHLAIYEAEELTCLKQWFP------I--S--------SVPISQATFSCD-CRMVFTSFVDGTLSIHE 1006 (1103)
Q Consensus       946 -~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~------~--h--------~~~v~~l~fs~d-g~~l~t~~~dg~v~vWd 1006 (1103)
                       ++|.+.++ ..++.|+.++ .+|......-.      +  .        -.....++++++ +.++++-.....|+.++
T Consensus       349 D~~g~lyvaD~~n~~I~~i~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~  427 (430)
T 3tc9_A          349 SDEYDFYFCDRENHCIRILT-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIG  427 (430)
T ss_dssp             SCCEEEEEEEGGGTEEEEEC-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEE
T ss_pred             CCCCeEEEEECCCcEEEEEC-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEc
Confidence             34565555 3667899988 45654332211      1  0        124688999995 55555544567788877


Q ss_pred             CC
Q 001310         1007 AS 1008 (1103)
Q Consensus      1007 ~~ 1008 (1103)
                      ++
T Consensus       428 ~e  429 (430)
T 3tc9_A          428 YE  429 (430)
T ss_dssp             EC
T ss_pred             cC
Confidence            64

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=98.03  E-value=0.0074  Score=64.45  Aligned_cols=239  Identities=9%  Similarity=-0.032  Sum_probs=146.5

Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee-EEeecCCCce
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT-YSFEGHGAPV  488 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~-~~~~~~~~~v  488 (1103)
                      +|+.+ ....|+..++.+..... . .+........+++|.+.+.. ++++-...+.|..+++..+... ..+...-...
T Consensus         6 ~ll~~-~~~~I~~i~l~~~~~~~-~-~~~~~~~~~~~ld~d~~~~~-lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p   81 (318)
T 3sov_A            6 LLLYA-NRRDLRLVDATNGKENA-T-IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSP   81 (318)
T ss_dssp             EEEEE-CEEEEEEEETTCTTSCC-E-EEEEEEEEEEEEEEEGGGTE-EEEEETTTTEEEEEETTSSSCCCEEEEECCSCC
T ss_pred             EEEEE-ccCeEEEEECCCCceEE-E-EEecCCCccEEEEEEeCCCE-EEEEECCCCcEEEEEccCCCceEEEEcCCCCCc
Confidence            34443 34568999998753111 1 12223345778999986664 4555666788999998766422 2222223345


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeE
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK  568 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~  568 (1103)
                      ..+++.+. ++.+.++-...+.|.+++++.................+++.|.+..|+.+...  ....|+..++......
T Consensus        82 ~glavd~~-~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~--~~~~I~r~~~dG~~~~  158 (318)
T 3sov_A           82 DGLACDWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWG--EVPKIERAGMDGSSRF  158 (318)
T ss_dssp             CEEEEETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECS--SSCEEEEEETTSCSCE
T ss_pred             cEEEEEcC-CCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecC--CCCEEEEEEcCCCCeE
Confidence            66777543 44566666677899999988655444444445567899999977777665421  2456888887643322


Q ss_pred             EEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEE
Q 001310          569 RTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIK  647 (1103)
Q Consensus       569 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~  647 (1103)
                      ......   -...+.+++++++..|+.+. ..+.|..+|+...........  .......+++.. +.++.+-...+.|.
T Consensus       159 ~~~~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~--~~~~P~glav~~-~~lywtd~~~~~V~  232 (318)
T 3sov_A          159 IIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKG--SLPHPFALTLFE-DILYWTDWSTHSIL  232 (318)
T ss_dssp             EEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS--CCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred             EEEECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecC--CCCCceEEEEeC-CEEEEEecCCCeEE
Confidence            222221   24678999999877777654 567899999875433333321  123346777753 44555555678898


Q ss_pred             EEEcCCCCeeEecc
Q 001310          648 ILETPESNSVDAAG  661 (1103)
Q Consensus       648 iw~~~~~~~~~~~~  661 (1103)
                      .++..+++....+.
T Consensus       233 ~~~~~~G~~~~~i~  246 (318)
T 3sov_A          233 ACNKYTGEGLREIH  246 (318)
T ss_dssp             EEETTTCCSCEEEE
T ss_pred             EEECCCCCceEEEe
Confidence            89887776555443

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.01  E-value=0.0098  Score=65.96  Aligned_cols=234  Identities=9%  Similarity=-0.071  Sum_probs=143.6

Q ss_pred             CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-CCCeEEEEEecCCCcc-ccc
Q 001310          357 GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDA-RQQ  434 (1103)
Q Consensus       357 ~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~d~~i~iwd~~~~~~~-~~~  434 (1103)
                      ..|+..++.......                    +...-..+..++|++.+..|..+. ..+.|..+++.+.... ...
T Consensus        92 ~~I~~i~l~~~~~~~--------------------~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~  151 (400)
T 3p5b_L           92 HEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYD  151 (400)
T ss_dssp             TEEEEECTTSCSCEE--------------------EECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCE
T ss_pred             ceeEEEccCCcceeE--------------------eccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcce
Confidence            678888887654332                    112345788999999766666554 5678999988763211 111


Q ss_pred             eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCeEEE
Q 001310          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKA  513 (1103)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~i  513 (1103)
                      ..+.........+++.+.+.. +.++-...+.|.+.++........+.........+++.+. ++.++++-.. .+.|..
T Consensus       152 ~~~~~~~~~p~glavD~~~~~-lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~-~g~ly~td~~~~~~I~~  229 (400)
T 3p5b_L          152 TVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKK  229 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTE-EEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETT-TTEEEEEECSSSCCEEE
T ss_pred             EEEeCCCCCcccEEEEecCCc-eEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecc-cCeEEEEeCCCCCEEEE
Confidence            122224456788999985554 4555666788999998766554444444456788888654 3334444323 477888


Q ss_pred             EEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE
Q 001310          514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI  593 (1103)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l  593 (1103)
                      .+++...........-.....+++++++..|+.+-.   +...|..+|+............. .......+++. .+..+
T Consensus       230 ~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~-~l~~P~gl~v~-~~~ly  304 (400)
T 3p5b_L          230 GGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF-EDKVF  304 (400)
T ss_dssp             EETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCCCEEEEECSS-TTSSEEEEEEE-TTEEE
T ss_pred             EeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEEC---CCCEEEEEeCCCCccEEEEeCCC-CCCCCEEEEEe-CCEEE
Confidence            888765554444444457789999998888887743   25679999986544333333211 11345566663 33344


Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEc
Q 001310          594 LAAGDDHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       594 ~~~~~dg~i~iwd~~~~~~~~~~~  617 (1103)
                      ++-...+.|..+|..+|+.+..+.
T Consensus       305 wtd~~~~~V~~~~~~~G~~~~~i~  328 (400)
T 3p5b_L          305 WTDIINEAIFSANRLTGSDVNLLA  328 (400)
T ss_dssp             EEESSSCSEEEEESSSCCCCEEEE
T ss_pred             EecCCCCeEEEEEcCCCCceEEEe
Confidence            455567788888877777666654

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.96  E-value=0.009  Score=63.76  Aligned_cols=233  Identities=12%  Similarity=0.006  Sum_probs=141.9

Q ss_pred             CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE-eCCCeEEEEEecCCCccccc
Q 001310          356 VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDARQQ  434 (1103)
Q Consensus       356 d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~-~~d~~i~iwd~~~~~~~~~~  434 (1103)
                      ...|+..|+.+........                 . .....+.+++|.+.+..|..+ ...+.|..+++.++..... 
T Consensus        12 ~~~I~~i~l~~~~~~~~~~-----------------~-~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~-   72 (318)
T 3sov_A           12 RRDLRLVDATNGKENATIV-----------------V-GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQN-   72 (318)
T ss_dssp             EEEEEEEETTCTTSCCEEE-----------------E-EEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCE-
T ss_pred             cCeEEEEECCCCceEEEEE-----------------e-cCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEE-
Confidence            4678889987664211100                 1 112356789999865555544 4567899999887632111 


Q ss_pred             eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEE--CCCeEE
Q 001310          435 LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS--VDGKIK  512 (1103)
Q Consensus       435 ~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~--~dg~i~  512 (1103)
                       .+.........+++.+.+.. +.++-...+.|.++++........+.........+++.+.. + .|+.+.  ..+.|.
T Consensus        73 -~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~-g-~ly~td~~~~~~I~  148 (318)
T 3sov_A           73 -VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS-G-FMYWTDWGEVPKIE  148 (318)
T ss_dssp             -EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG-T-EEEEEECSSSCEEE
T ss_pred             -EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC-C-EEEEEecCCCCEEE
Confidence             12222235668899876654 45555667889999976544333333445567888887542 3 444444  357788


Q ss_pred             EEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCE
Q 001310          513 AWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ  592 (1103)
Q Consensus       513 iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  592 (1103)
                      ..+++...........-.....+++++++..|+.+-.   ....|..+|+..........+..   .....+++.. +..
T Consensus       149 r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~---~~P~glav~~-~~l  221 (318)
T 3sov_A          149 RAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSL---PHPFALTLFE-DIL  221 (318)
T ss_dssp             EEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCC---SCEEEEEEET-TEE
T ss_pred             EEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCC---CCceEEEEeC-CEE
Confidence            8887754444333333446789999998888877643   35679999986433322232222   4566777753 334


Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcC
Q 001310          593 ILAAGDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       593 l~~~~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                      +++-...+.|..++..+|+....+..
T Consensus       222 ywtd~~~~~V~~~~~~~G~~~~~i~~  247 (318)
T 3sov_A          222 YWTDWSTHSILACNKYTGEGLREIHS  247 (318)
T ss_dssp             EEEETTTTEEEEEETTTCCSCEEEEC
T ss_pred             EEEecCCCeEEEEECCCCCceEEEeC
Confidence            44555678898999887776666543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.94  E-value=0.0031  Score=66.38  Aligned_cols=195  Identities=11%  Similarity=0.154  Sum_probs=125.4

Q ss_pred             CCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCC---CCC---EEEEEe-C--CCeEEEEEcC--CceeEEE
Q 001310          814 DAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPH---DNN---VIAIGM-D--DSTILIYNAR--SSEVISK  881 (1103)
Q Consensus       814 ~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~---d~~---~lasg~-~--dg~v~iwd~~--~~~~~~~  881 (1103)
                      ..+++... .+.+.+||+ +|+.++.+..  +.+..+..-|.   +++   ++++.. .  +++|.+|++.  +++ +..
T Consensus        40 ~s~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~  115 (355)
T 3amr_A           40 NSKLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQS  115 (355)
T ss_dssp             GCEEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEE
T ss_pred             ccEEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eee
Confidence            34443333 578999999 8999988853  56666666551   122   233333 3  5799999774  443 444


Q ss_pred             ecc------CC-CCEEEEEE--ccC-CC-EEEEEeCCCeEEEEEcC---CCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310          882 LEG------HS-KRVTGLVF--SDA-LN-ILVSSGGDAQIFVWDVD---GWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       882 l~~------h~-~~V~~l~~--s~d-g~-~l~s~s~dg~I~iwd~~---~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  947 (1103)
                      +..      .. ..+..+++  +|. ++ ++++...+|.+..|++.   .+... .+.++.+.-.    +.+..++..+.
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~-~~lVR~f~lg----sq~EgcvvDd~  190 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYIS-GKKVRAFKMN----SQTEGMAADDE  190 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEE-EEEEEEEECS----SCEEEEEEETT
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCccc-ceEEEEecCC----CCcceEEEcCC
Confidence            421      11 45677888  774 44 67778889999999994   33222 2233332211    25889999999


Q ss_pred             CCEEEEE-eCCeEEEEECC-----CceEEEEeeCCC-CcCeEEEEE--ccCCC-EEEEEe-cCCcEEEEeCC-CceeEEe
Q 001310          948 QTRFLLV-HETHLAIYEAE-----ELTCLKQWFPIS-SVPISQATF--SCDCR-MVFTSF-VDGTLSIHEAS-NLEVQCR 1015 (1103)
Q Consensus       948 g~~l~~~-~d~~v~iwd~~-----~~~~~~~~~~~h-~~~v~~l~f--s~dg~-~l~t~~-~dg~v~vWd~~-~~~~~~~ 1015 (1103)
                      ...|.++ .+..|..|+.+     +++.+..+-.++ ...+-.|++  .++++ +|++++ .+.++.|||.. +.+.+.+
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            8888887 44456666754     455665533344 346778887  56666 677666 56799999997 7888888


Q ss_pred             ec
Q 001310         1016 IL 1017 (1103)
Q Consensus      1016 ~~ 1017 (1103)
                      |.
T Consensus       271 f~  272 (355)
T 3amr_A          271 FR  272 (355)
T ss_dssp             EE
T ss_pred             EE
Confidence            86

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.93  E-value=0.0083  Score=72.20  Aligned_cols=237  Identities=10%  Similarity=-0.028  Sum_probs=146.3

Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCC----ceeEEeecCC
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTG----SRTYSFEGHG  485 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~----~~~~~~~~~~  485 (1103)
                      +|+.+ ....|+..++......    .+......+..++|.+.+.. ++++-...+.|+.+++...    .....+....
T Consensus       397 ~Ll~a-n~~~Ir~i~l~~~~~~----~l~~~~~~~~gl~~d~~~~~-lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l  470 (791)
T 3m0c_C          397 YLFFT-NRHEVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI  470 (791)
T ss_dssp             EEEEE-CBSSEEEECTTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             ccccc-cccceeEeeccCCcce----eeecCCCceEEEeecccCCe-eEEeeccceeEEEEeccCCCCCcceeEEEecCC
Confidence            44444 3445777777765422    23334556789999986664 4555566788999998753    2233333344


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      .....|++.+. .+.+.++-...+.|.+.+++.................|++.|.+.+|+..-..  ....|...++...
T Consensus       471 ~~P~GLAvD~~-~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g--~~~~I~~~~~dG~  547 (791)
T 3m0c_C          471 QAPDGLAVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  547 (791)
T ss_dssp             SCCCEEEEETT-TTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceeeeeec-CCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCC--CCCeEEEEecCCC
Confidence            55667887643 33566666778899999998666555544445568899999987777665421  1256888888654


Q ss_pred             eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECC
Q 001310          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE  643 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d  643 (1103)
                      .....+...-   .....|++++.+..|+.+. ..+.|...++........+...........+++.  +..|+.+ ...
T Consensus       548 ~~~~lv~~~l---~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~~~lYwtD~~~  622 (791)
T 3m0c_C          548 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN  622 (791)
T ss_dssp             CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred             ceEEEEeCCC---CCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEe--CCEEEEEECCC
Confidence            4433333322   5788999998877777764 5578999998765554444433222333456654  3344444 456


Q ss_pred             CeEEEEEcCCCCeeEec
Q 001310          644 NRIKILETPESNSVDAA  660 (1103)
Q Consensus       644 g~i~iw~~~~~~~~~~~  660 (1103)
                      +.|...+..+++.+..+
T Consensus       623 ~~I~~~dk~tG~~~~~l  639 (791)
T 3m0c_C          623 EAIFSANRLTGSDVNLL  639 (791)
T ss_dssp             TEEEEEETTTCCCCEEE
T ss_pred             CEEEEEeCCCCcceEEe
Confidence            77888887777555544

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=97.86  E-value=0.0033  Score=70.53  Aligned_cols=239  Identities=15%  Similarity=0.093  Sum_probs=135.2

Q ss_pred             cCceEEEecCC---CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          335 SSPMSMDFHPV---QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       335 ~~V~~v~~spd---g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .....++|+|+   |. |.++-.. +.|+.+|..+++...                    +.+.......++|+++|+++
T Consensus       139 ~~P~gvavd~~s~~g~-Lyv~D~~-~~I~~id~~~g~v~~--------------------~~~~~~~P~giavd~dG~ly  196 (433)
T 4hw6_A          139 DNIWRMMFDPNSNYDD-LYWVGQR-DAFRHVDFVNQYVDI--------------------KTTNIGQCADVNFTLNGDMV  196 (433)
T ss_dssp             SCCCEEEECTTTTTCE-EEEECBT-SCEEEEETTTTEEEE--------------------ECCCCSCEEEEEECTTCCEE
T ss_pred             CCCceEEEccccCCCE-EEEEeCC-CCEEEEECCCCEEEE--------------------eecCCCCccEEEECCCCCEE
Confidence            35789999995   54 4444333 889999988776543                    12234568899999999944


Q ss_pred             EEEeCC---Ce-EEEEEecCCCccccceEeccccccEEEEEEec-CCCceEEEEEcCCCceEEEeCCCCceeEEe-ec-C
Q 001310          412 GVAYSK---HI-VQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA-PCKQISVITCGDDKTIKVWDAVTGSRTYSF-EG-H  484 (1103)
Q Consensus       412 as~~~d---~~-i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~-d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~-~~-~  484 (1103)
                      ++....   .. +...+...+. .. ...+. .......+++.| +|.  +.++-..++.|+.+|..++.....+ .. .
T Consensus       197 Vad~~~~~~~~gv~~~~~~~~~-~~-~~~~~-~~~~P~giavd~~~G~--lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~  271 (433)
T 4hw6_A          197 VVDDQSSDTNTGIYLFTRASGF-TE-RLSLC-NARGAKTCAVHPQNGK--IYYTRYHHAMISSYDPATGTLTEEEVMMDT  271 (433)
T ss_dssp             EEECCSCTTSEEEEEECGGGTT-CC-EEEEE-ECSSBCCCEECTTTCC--EEECBTTCSEEEEECTTTCCEEEEEEECSC
T ss_pred             EEcCCCCcccceEEEEECCCCe-ec-ccccc-ccCCCCEEEEeCCCCe--EEEEECCCCEEEEEECCCCeEEEEEeccCC
Confidence            444321   22 3333333221 11 01111 223456788999 665  5555566788999998878763332 21 1


Q ss_pred             CCceEEEEeeecCCcc-EEEEEECCCeEEEEEcCCCCe----eEEecCC---------------CccEEEEEE-------
Q 001310          485 GAPVYSLCPHAKENIH-FIFSISVDGKIKAWLYDSLGA----RVDYDAP---------------GLGCTRMAY-------  537 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~----~~~~~~~---------------~~~i~~~~~-------  537 (1103)
                      ...-..+++++  ++. +.++-...+.|..++++....    ...+...               -.....+++       
T Consensus       272 ~~~~~~ia~dp--dG~~LYvad~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~  349 (433)
T 4hw6_A          272 KGSNFHIVWHP--TGDWAYIIYNGKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYA  349 (433)
T ss_dssp             CSSCEEEEECT--TSSEEEEEETTTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGT
T ss_pred             CCCcccEEEeC--CCCEEEEEeCCCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEcccccc
Confidence            22234577754  556 455555678899988763211    1111111               113567888       


Q ss_pred             --ccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccc---------------cCCceEEEEEc-CCCCEEEEEeCC
Q 001310          538 --SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL---------------QHNSVSVVHFD-TAKDQILAAGDD  599 (1103)
Q Consensus       538 --s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---------------~~~~v~~~~~~-~~~~~l~~~~~d  599 (1103)
                        .++|.+.++-.    +...|+.++. +|.. ..+.+...               .-.....++++ +++..+++=..+
T Consensus       350 ~dd~~g~lyvaD~----~n~~I~~~~~-~G~v-~t~~G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n  423 (433)
T 4hw6_A          350 GEEDEYDFYFCDR----DSHTVRVLTP-EGRV-TTYAGRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDN  423 (433)
T ss_dssp             TSSCCEEEEEEET----TTTEEEEECT-TSEE-EEEECCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGG
T ss_pred             ccCCCCcEEEEEC----CCCEEEEECC-CCCE-EEEEeCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCC
Confidence              66666555533    2556888885 5643 33333210               11346778888 455544444456


Q ss_pred             CcEEEEECC
Q 001310          600 HVIKIWDMN  608 (1103)
Q Consensus       600 g~i~iwd~~  608 (1103)
                      +.|+.++++
T Consensus       424 ~rIr~i~~e  432 (433)
T 4hw6_A          424 HRVRKIAPE  432 (433)
T ss_dssp             TEEEEEEEC
T ss_pred             CEEEEEecC
Confidence            677776653

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.78  E-value=0.0087  Score=67.03  Aligned_cols=252  Identities=7%  Similarity=0.010  Sum_probs=139.2

Q ss_pred             cEEEEEEec-CCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEE---
Q 001310          736 KISRLTYNN-GGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFAL---  810 (1103)
Q Consensus       736 ~i~~~~~s~-~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~---  810 (1103)
                      ....++|+| +...|+++.. .+.|++.|+.....                      ...... ..........++|   
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v----------------------~~l~~~-~~~~~~~p~~ia~~~~  196 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRML----------------------SSPLNI-NTIPTNRIRSIAFNKK  196 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEE----------------------EEEECC-TTSSCSBEEEEEECCC
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEE----------------------EEEEcc-CccccCCCcEEEEeec
Confidence            456889998 3555555554 35566665443321                      111111 0012346789999   


Q ss_pred             ----ecCCCEEEEEcC-C-------eEEEEEcCC-ceee-----EEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEE
Q 001310          811 ----SKNDAYLFSASG-G-------VISLYIVMT-FKTI-----LTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYN  872 (1103)
Q Consensus       811 ----s~d~~~l~~~~d-g-------~i~iwd~~~-~~~~-----~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd  872 (1103)
                          +++|+.|.++.+ +       .|.+++... +...     +.+. .......++++|+++.++++-..++.|..+|
T Consensus       197 ~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~G~~~~~~~~~~v~-~~~~p~giavdp~~g~LYvtd~~~g~V~r~d  275 (496)
T 3kya_A          197 IEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNADGTFDDRSDIQLIA-AYKQCNGATIHPINGELYFNSYEKGQVFRLD  275 (496)
T ss_dssp             BTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTTSCCSTTSCEEEEE-EESCCCCEEECTTTCCEEEEETTTTEEEEEC
T ss_pred             ccccCCCCCEEEEEeCCCCCcccCceEEEEecCCCCceeecccceeec-cCCCceEEEEcCCCCeEEEEECCCCEEEEEe
Confidence                999997776653 2       255665443 2221     1221 1124457889996666777777888999999


Q ss_pred             cC-------Ccee-----------EEEe-c-cCCCCEEEEEEccCCCEE-EEEeCCCeEEEEEcCC--Cceeeeeeeec-
Q 001310          873 AR-------SSEV-----------ISKL-E-GHSKRVTGLVFSDALNIL-VSSGGDAQIFVWDVDG--WGIQTCRSLQT-  928 (1103)
Q Consensus       873 ~~-------~~~~-----------~~~l-~-~h~~~V~~l~~s~dg~~l-~s~s~dg~I~iwd~~~--~~~~~~~~~~~-  928 (1103)
                      +.       ++..           ...+ . +.......|+|+|+|++| ++-.....|+.++.+.  +.......+.- 
T Consensus       276 ~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~  355 (496)
T 3kya_A          276 LVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGG  355 (496)
T ss_dssp             HHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEB
T ss_pred             cccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCC
Confidence            97       5543           1222 1 223446789999999954 4445667888866653  22111111111 


Q ss_pred             --CCCccc------CCCCce-EEEEc-------CCCCEEEE-EeCCeEEEEECCCceEEEEeeC-------------CC-
Q 001310          929 --PDGVMT------LAPSET-HIQFH-------KDQTRFLL-VHETHLAIYEAEELTCLKQWFP-------------IS-  977 (1103)
Q Consensus       929 --~~~~~~------~~~~v~-~l~fs-------~dg~~l~~-~~d~~v~iwd~~~~~~~~~~~~-------------~h-  977 (1103)
                        ..+...      .-.... .++..       ++|.+.++ ..++.|+.++ .+|.. .++..             +. 
T Consensus       356 ~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~v-~TiaG~g~~~~~~~~~~~G~~  433 (496)
T 3kya_A          356 YKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGIV-STYAGRGASTSLADGNQWGTD  433 (496)
T ss_dssp             TTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCBE-EEEEESCTTHHHHHSCSCCCC
T ss_pred             CCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCCE-EEEecccccccccCccccccC
Confidence              111110      001234 45554       45665555 4778899998 45643 23221             11 


Q ss_pred             ---------CcCeEEEEEccC-CCEEEEEecCCcEEEEeCCCceeE
Q 001310          978 ---------SVPISQATFSCD-CRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus       978 ---------~~~v~~l~fs~d-g~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
                               -.....|+++++ |.++++=.....||.++++.....
T Consensus       434 dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          434 DGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             CEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             CCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence                     123567888887 665555556678888888765443

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.77  E-value=0.022  Score=68.54  Aligned_cols=215  Identities=10%  Similarity=-0.051  Sum_probs=131.6

Q ss_pred             CCccEEEEEECCCCCEEEEE-eCCCeEEEEEecCCCcc-ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310          395 PGVSVNRVVWSPDGSLLGVA-YSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~-~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      ....+..++|.+.+..|..+ ...+.|+.+++...... .....+.........|++.+.++. ++++-...+.|.+.++
T Consensus       422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l  500 (791)
T 3m0c_C          422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT  500 (791)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred             CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence            34567899999865555544 45678998988753210 111123324455678999988865 4556667789999997


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEEECC-CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      ........+.........|++.+. .+.++++-... +.|.+.+++...........-.....|++++.+..|+.+-.  
T Consensus       501 dG~~~~~l~~~~l~~P~gIaVDp~-~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~--  577 (791)
T 3m0c_C          501 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--  577 (791)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred             CCCeEEEEEeCCCCCcceEEEecC-CCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence            755544444444556888998654 23344443333 77888888766555555544467889999988888877643  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEc
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTID  617 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~  617 (1103)
                       +...|...++........+.... .......+++.  +.+|+.+ ...+.|...|..+|+.+..+.
T Consensus       578 -~~~~I~~~d~dG~~~~~v~~~~~-~l~~P~glav~--~~~lYwtD~~~~~I~~~dk~tG~~~~~l~  640 (791)
T 3m0c_C          578 -KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLA  640 (791)
T ss_dssp             -TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred             -CCCcEEEEecCCCceEEEecCCC-ccCCCCEEEEe--CCEEEEEECCCCEEEEEeCCCCcceEEee
Confidence             25579999986554444433311 11234566653  3355544 456778888877776665553

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.72  E-value=0.0071  Score=67.74  Aligned_cols=250  Identities=11%  Similarity=0.122  Sum_probs=139.9

Q ss_pred             cEEEEEECC-CCCEEEEEeC-CCeEEEEEecCCCccccceEec-cccccEEEEEE-------ecCCCceEEEEEcCCC--
Q 001310          398 SVNRVVWSP-DGSLLGVAYS-KHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAF-------SAPCKQISVITCGDDK--  465 (1103)
Q Consensus       398 ~V~~~~~sp-dg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~-------s~d~~~~~l~s~~~d~--  465 (1103)
                      ....|+|+| +...|.++.. .+.|++.|.+++.... +.... +.......++|       +++|+.  |+.+...+  
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~-l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~--lyvad~~~~~  216 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSS-PLNINTIPTNRIRSIAFNKKIEGYADEAEY--MIVAIDYDGK  216 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEE-EECCTTSSCSBEEEEEECCCBTTTBCTTCE--EEEEECCCTT
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEE-EEccCccccCCCcEEEEeecccccCCCCCE--EEEEeCCCCC
Confidence            467899999 4555555543 4678888888764332 11110 12235889999       999984  44443332  


Q ss_pred             -----ceEEEeCCC-Ccee-----EEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcC-------CCCe------
Q 001310          466 -----TIKVWDAVT-GSRT-----YSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD-------SLGA------  521 (1103)
Q Consensus       466 -----~i~iwd~~~-~~~~-----~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~-------~~~~------  521 (1103)
                           .|.+.+... |...     ..+... .....+++++. ++.++++-..++.|..+|++       ++..      
T Consensus       217 ~~~~~~V~~i~r~~~G~~~~~~~~~~v~~~-~~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~  294 (496)
T 3kya_A          217 GDESPSVYIIKRNADGTFDDRSDIQLIAAY-KQCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVK  294 (496)
T ss_dssp             GGGEEEEEEEECCTTSCCSTTSCEEEEEEE-SCCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGG
T ss_pred             cccCceEEEEecCCCCceeecccceeeccC-CCceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccc
Confidence                 266666443 2221     222211 12334566442 45666777788889999987       4443      


Q ss_pred             -----e-EEe-cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC--CCCeeE--EEEecc---c---------ccC
Q 001310          522 -----R-VDY-DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE--SEGAIK--RTYQGL---Q---------LQH  578 (1103)
Q Consensus       522 -----~-~~~-~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~--~~~~~~--~~~~~~---~---------~~~  578 (1103)
                           . ..+ .........++|+|+|+.|+.+-.   ....|+.++.  .++...  ..+.+.   .         ..-
T Consensus       295 ~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f  371 (496)
T 3kya_A          295 NNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARM  371 (496)
T ss_dssp             GCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBC
T ss_pred             ccccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCccccccc
Confidence                 1 112 222344678999999997666532   2556887554  444321  233322   0         011


Q ss_pred             CceE-EEEEc-------CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC----------------------CCCCCceE
Q 001310          579 NSVS-VVHFD-------TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG----------------------GLPENPRI  628 (1103)
Q Consensus       579 ~~v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v  628 (1103)
                      .... .++..       +++..+++=...+.|+.++ .+|. +.++.+.+                      .......+
T Consensus       372 ~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gI  449 (496)
T 3kya_A          372 NNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGL  449 (496)
T ss_dssp             SSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEE
T ss_pred             CCCeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEE
Confidence            2234 45554       4566666666788999998 4554 43443211                      01223578


Q ss_pred             EEecC-CCEEEEEECCCeEEEEEcCCCCee
Q 001310          629 CFNKN-GTLLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       629 ~~s~~-g~~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                      +++++ |.++++=..++.|+.++++.....
T Consensus       450 avd~~~g~lyVaD~~N~rIrki~~~~~~~~  479 (496)
T 3kya_A          450 VYDDVKEMFYVHDQVGHTIRTISMEQEENV  479 (496)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECCCC--
T ss_pred             EEECCCCEEEEEeCCCCEEEEEECCCCccc
Confidence            99986 665555556788888888765433

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.69  E-value=0.00037  Score=83.59  Aligned_cols=205  Identities=9%  Similarity=0.006  Sum_probs=125.2

Q ss_pred             CCeeEEEEecCCCEEEEEc--CCeEEEEEcCC----ceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc
Q 001310          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT----FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS  876 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~----~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~  876 (1103)
                      ..+..++|++.+..|..+.  .+.|..+++..    ......+.........|++.+.+++++++-...+.|.++++...
T Consensus       406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~  485 (699)
T 1n7d_A          406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV  485 (699)
T ss_dssp             TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred             cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence            3566789999877777765  57899999875    22222222222345678888635666666566789999998755


Q ss_pred             eeEEEeccCCCCEEEEEEccCCCEEEEEeC-C-CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE
Q 001310          877 EVISKLEGHSKRVTGLVFSDALNILVSSGG-D-AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1103)
Q Consensus       877 ~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~-d-g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~  954 (1103)
                      .....+.........|++.|++.+|..+.. . +.|...+++......  .+.   ...   .....|+|+|++..|.++
T Consensus       486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~--l~~---~~l---~~PnGlavd~~~~~LY~a  557 (699)
T 1n7d_A          486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS--LVT---ENI---QWPNGITLDLLSGRLYWV  557 (699)
T ss_dssp             CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCE--ESC---SSC---SSCCCEEECTTTCCEEEE
T ss_pred             ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeE--EEe---CCC---CCccEEEEeccCCEEEEE
Confidence            433333323345678899997655554432 2 678777776532111  111   111   146789999987777665


Q ss_pred             --eCCeEEEEECCCceEEEEeeCC--CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          955 --HETHLAIYEAEELTCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       955 --~d~~v~iwd~~~~~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                        ..+.|..++++... ...+...  ......+|++..+ .++++....+.|..++..+|+.+..+.
T Consensus       558 D~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~  622 (699)
T 1n7d_A          558 DSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA  622 (699)
T ss_dssp             ETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred             ecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence              56789999987432 2222321  1233445666544 455555567899999999998876665

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.69  E-value=0.0066  Score=63.34  Aligned_cols=202  Identities=12%  Similarity=0.090  Sum_probs=125.5

Q ss_pred             CeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEE-ecC----CC--CCeeEEEE---cCCCCCEEEEEe--------
Q 001310          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILT-IMP----PS--PTATSLAF---NPHDNNVIAIGM--------  863 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~-~~~----~~--~~i~~l~~---s~~d~~~lasg~--------  863 (1103)
                      -..+++|.+....+..++  .++|..||...+..... +..    ..  ..+..+.+   .| +++++++..        
T Consensus        14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~   92 (334)
T 2p9w_A           14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA   92 (334)
T ss_dssp             CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred             CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence            445788887555555554  79999999976544333 221    11  14578999   68 687877644        


Q ss_pred             -----CCCeEEEEEcC---CceeEEEec--cCC-----------CCEEEEEEccCCCEEEEEeCC-CeEEEEEcCCCcee
Q 001310          864 -----DDSTILIYNAR---SSEVISKLE--GHS-----------KRVTGLVFSDALNILVSSGGD-AQIFVWDVDGWGIQ  921 (1103)
Q Consensus       864 -----~dg~v~iwd~~---~~~~~~~l~--~h~-----------~~V~~l~~s~dg~~l~s~s~d-g~I~iwd~~~~~~~  921 (1103)
                           .+..|..||+.   +++.+....  ...           .....++..++|+..++++.- +.|...+.+.....
T Consensus        93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~~~  172 (334)
T 2p9w_A           93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKTVS  172 (334)
T ss_dssp             SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCCEE
T ss_pred             ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCEEe
Confidence                 26789999999   787665443  211           247899999999999999888 87776666653222


Q ss_pred             eeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceE--EEEeeCCC---CcCeEEE-EEccCCCE-E
Q 001310          922 TCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTC--LKQWFPIS---SVPISQA-TFSCDCRM-V  993 (1103)
Q Consensus       922 ~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~--~~~~~~~h---~~~v~~l-~fs~dg~~-l  993 (1103)
                      . ..+..+....  ......+++.|||+.|++. ..+.|..+|+.+...  +..-..+.   -.....+ .--.+|+. |
T Consensus       173 ~-~~~~~~~~~~--~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vll  249 (334)
T 2p9w_A          173 T-FAWESGNGGQ--RPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVL  249 (334)
T ss_dssp             E-EEECCCCSSS--CCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEE
T ss_pred             e-eeecCCCccc--ccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEE
Confidence            1 1111111111  1247799999999998884 588999999885433  22110021   1223443 33357777 4


Q ss_pred             EEEecCCcEEEEeCCC
Q 001310          994 FTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       994 ~t~~~dg~v~vWd~~~ 1009 (1103)
                      ++.+..+.+.+.+-+.
T Consensus       250 V~~~~~~~~~l~S~Dg  265 (334)
T 2p9w_A          250 VGARAPYAISFRSWDN  265 (334)
T ss_dssp             EEEETTEEEEEECSST
T ss_pred             EEcCCCCEEEEECCCC
Confidence            5555566666666554

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.69  E-value=0.011  Score=62.33  Aligned_cols=193  Identities=12%  Similarity=0.140  Sum_probs=119.7

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeec--CCcc---EEE-EEEC--CCeEEEEEcCCCC-eeEEecC
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK--ENIH---FIF-SISV--DGKIKAWLYDSLG-ARVDYDA  527 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~---~l~-s~~~--dg~i~iwd~~~~~-~~~~~~~  527 (1103)
                      +++.....+-+.+||+ +|+.++.+..  +.++.+.+.+.  -++.   +++ +.-.  +++|.+|+++... ....+..
T Consensus        42 ~ii~t~k~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~  118 (355)
T 3amr_A           42 KLITTNKKSGLVVYSL-DGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTD  118 (355)
T ss_dssp             EEEEEETTTEEEEEET-TSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSC
T ss_pred             EEEEEcCCCCEEEEcC-CCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeeccc
Confidence            4565666778999998 9999988864  55666655431  0122   223 3333  5789999875322 2223311


Q ss_pred             ------CC-ccEEEEEE--ccC-CC-EEEEEecCCCCceeEEEEeC---C----CCeeEEEEecccccCCceEEEEEcCC
Q 001310          528 ------PG-LGCTRMAY--SAN-GR-RLFSCGTSKEGESFLVEWNE---S----EGAIKRTYQGLQLQHNSVSVVHFDTA  589 (1103)
Q Consensus       528 ------~~-~~i~~~~~--s~d-g~-~l~~~~~~~~~~~~i~iwd~---~----~~~~~~~~~~~~~~~~~v~~~~~~~~  589 (1103)
                            .. ..+..+|+  +|. ++ ++++...    ++.+..|++   .    +.+.++.+...    ..+..|...+.
T Consensus       119 ~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k----~G~~~q~~l~~~~~g~~~~~lVR~f~lg----sq~EgcvvDd~  190 (355)
T 3amr_A          119 PDHPIATAINEVYGFTLYHSQKTGKYYAMVTGK----EGEFEQYELKADKNGYISGKKVRAFKMN----SQTEGMAADDE  190 (355)
T ss_dssp             TTSCEECCCSSCCCEEEEECTTTCCEEEEEECS----SSEEEEEEEEECTTSCEEEEEEEEEECS----SCEEEEEEETT
T ss_pred             cccCcCCCCCCeeEEEEEecCCCCcEEEEEECC----CCeEEEEEEEeCCCCcccceEEEEecCC----CCcceEEEcCC
Confidence                  11 45666777  774 44 3444432    456877777   2    34556666653    46888999999


Q ss_pred             CCEEEEEeCCCcEEEEECC-----CCeeEEEEcCCCCCCCCceEEE--ecCCC-EEEEEE-CCCeEEEEEcC-CCCeeEe
Q 001310          590 KDQILAAGDDHVIKIWDMN-----KVQLLTTIDAGGGLPENPRICF--NKNGT-LLAVIA-NENRIKILETP-ESNSVDA  659 (1103)
Q Consensus       590 ~~~l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~g~-~l~~~~-~dg~i~iw~~~-~~~~~~~  659 (1103)
                      ..+|+.+-++..|..++.+     +++.+..+....-...+..+++  .++++ +|++.+ .++++.+|+.. +.+.+..
T Consensus       191 ~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~  270 (355)
T 3amr_A          191 YGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVAD  270 (355)
T ss_dssp             TTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEE
T ss_pred             CCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEE
Confidence            9999999998777777755     3455555533222225677877  45555 666666 56799999996 4444444


Q ss_pred             c
Q 001310          660 A  660 (1103)
Q Consensus       660 ~  660 (1103)
                      +
T Consensus       271 f  271 (355)
T 3amr_A          271 F  271 (355)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.62  E-value=0.00027  Score=84.68  Aligned_cols=235  Identities=9%  Similarity=-0.021  Sum_probs=135.6

Q ss_pred             CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC----CceeEEeecCCCceEEE
Q 001310          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT----GSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~----~~~~~~~~~~~~~v~~~  491 (1103)
                      ..+.|++.++.+.+....    ......+..++|.+.+.. ++++-...+.|+.+++.+    ......+.........+
T Consensus       384 ~~~~I~~id~~~~~~~~~----~~~~~~p~gla~d~~~~~-Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~gl  458 (699)
T 1n7d_A          384 NRHEVRKMTLDRSEYTSL----IPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGL  458 (699)
T ss_dssp             CTTC-CEECTTSCCEECC----SCCCTTCCCCEEETTTTE-EEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCE
T ss_pred             CccceEEEeCCCCcceee----eccCcceEEEccccccCe-EEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceE
Confidence            345677888776543321    122235678999987763 344445567899999875    22222222122234556


Q ss_pred             EeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEE
Q 001310          492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY  571 (1103)
Q Consensus       492 ~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~  571 (1103)
                      ++.+. ++.++++-...+.|.+++++.......+.........++++|.+.+|+.+...  ..+.|+.+++..... ..+
T Consensus       459 avD~~-~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~--~~~~I~~~~~dG~~~-~~l  534 (699)
T 1n7d_A          459 AVDWI-HSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGVDI-YSL  534 (699)
T ss_dssp             ECCCS-SSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCS--SSCCEEBCCSSSCCC-CEE
T ss_pred             EEEee-CCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccC--CCCeEEEEeCCCCCe-eEE
Confidence            66533 34455565667889999887655444443333455778999977766654321  125687777653322 222


Q ss_pred             ecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEE
Q 001310          572 QGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILE  650 (1103)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~  650 (1103)
                      ....  ....+.++|+|++..|+.+ +..+.|.++++........+...........+++..+ .++++....+.|..++
T Consensus       535 ~~~~--l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d  611 (699)
T 1n7d_A          535 VTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSAN  611 (699)
T ss_dssp             SCSS--CSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEE
T ss_pred             EeCC--CCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEE
Confidence            2111  2456789999987666654 4667899999875443333332222233456677654 4555555678899999


Q ss_pred             cCCCCeeEeccc
Q 001310          651 TPESNSVDAAGV  662 (1103)
Q Consensus       651 ~~~~~~~~~~~~  662 (1103)
                      ..+++.+..+..
T Consensus       612 ~~~G~~~~~i~~  623 (699)
T 1n7d_A          612 RLTGSDVNLLAE  623 (699)
T ss_dssp             TTTEEEEECCCT
T ss_pred             ccCCCceEEeec
Confidence            887776665543

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.49  E-value=0.12  Score=55.47  Aligned_cols=236  Identities=11%  Similarity=0.084  Sum_probs=143.9

Q ss_pred             EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCe
Q 001310          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1103)
Q Consensus       340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~  419 (1103)
                      .-.+|..+ ++|.=. ..++.|+|+++.+.++.+.+                    ...|..-.|-.+ +.|+-. .+..
T Consensus        71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~~--------------------~e~VvfWkWis~-~~l~lV-T~ta  126 (494)
T 1bpo_A           71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISL-NTVALV-TDNA  126 (494)
T ss_dssp             EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEEEET-TEEEEE-CSSE
T ss_pred             eeeCCCCc-EEEEec-CCeEEEEchHHhhhhcceec--------------------CCCceEEEecCC-CeEEEE-cCCe
Confidence            34567776 555543 57899999999988876442                    246667777644 445544 3556


Q ss_pred             EEEEEecCCCccccceEecccc----ccEEEEEEecCCCceEEEEEc-----CCCceEEEeCCCCceeEEeecCCCceEE
Q 001310          420 VQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1103)
Q Consensus       420 i~iwd~~~~~~~~~~~~l~~h~----~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~  490 (1103)
                      |+-|++.+...  +...+..|.    ..|..-..+++.+++.|+.-+     -.|.+.+|..+.+ .-+.++||.+....
T Consensus       127 VyHWsi~~~s~--P~kvFdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F~~  203 (494)
T 1bpo_A          127 VYHWSMEGESQ--PVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASFAQ  203 (494)
T ss_dssp             EEEEESSSSCC--CEEEEECCGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEEEE
T ss_pred             eEEecccCCCC--chhheecchhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeeeEE
Confidence            99999976432  222344443    357777788998863332221     2467889986554 45678888877766


Q ss_pred             EEeeecCCc-cEEEEEECC---CeEEEEEcCCC---C-----eeEEecC----CCccEEEEEEccCCCEEEEEecCCCCc
Q 001310          491 LCPHAKENI-HFIFSISVD---GKIKAWLYDSL---G-----ARVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1103)
Q Consensus       491 ~~~~~~~~~-~~l~s~~~d---g~i~iwd~~~~---~-----~~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1103)
                      +.+...... .+++.+...   +.+++-++...   .     ....+..    ...-..++..|+.-..++..+.    .
T Consensus       204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK----~  279 (494)
T 1bpo_A          204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y  279 (494)
T ss_dssp             EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----T
T ss_pred             EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----C
Confidence            655322222 234444433   78999988653   1     1111111    1223457788887777777764    6


Q ss_pred             eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1103)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  609 (1103)
                      |.|++||+.++.++..-+-..   ..|...+-..+..-+++....|.|.--.++.
T Consensus       280 G~i~lyDleTgt~i~~nrIs~---~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          280 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             SEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTCEEEEEEECT
T ss_pred             ceEEEEecccceeeeeecccC---CceEEecccCCCCcEEEEccCceEEEEEEcc
Confidence            789999999999877665444   5555555555555555555666555444443

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.33  E-value=0.065  Score=58.04  Aligned_cols=196  Identities=14%  Similarity=0.092  Sum_probs=109.1

Q ss_pred             CCeeEEEEecCCCEEEEEcCCeEEEEEcCCce-eeEEec---CCCCCeeEEEEcCC---CCCEEEEEeC---C----CeE
Q 001310          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK-TILTIM---PPSPTATSLAFNPH---DNNVIAIGMD---D----STI  868 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---d~~~lasg~~---d----g~v  868 (1103)
                      .....++|.|||+++++-.+|.|.+++. +++ .+..+.   ........++++|+   ++.+.++-..   +    +.|
T Consensus        29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v  107 (354)
T 3a9g_A           29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV  107 (354)
T ss_dssp             SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred             CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence            4567899999999888777899998873 454 222221   12346889999993   2444443332   3    578


Q ss_pred             EEEEcCCc-------ee-EEEecc-CCCCEEEEEEccCCCEEEEEeCC-------------CeEEEEEcCCCceee----
Q 001310          869 LIYNARSS-------EV-ISKLEG-HSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWGIQT----  922 (1103)
Q Consensus       869 ~iwd~~~~-------~~-~~~l~~-h~~~V~~l~~s~dg~~l~s~s~d-------------g~I~iwd~~~~~~~~----  922 (1103)
                      ..|+....       +. +..+.. .......|+|.|||.++++.+..             |.|.-.+.+. +...    
T Consensus       108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf  186 (354)
T 3a9g_A          108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF  186 (354)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred             EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence            88887654       11 122221 11123679999999888875432             3454444432 1100    


Q ss_pred             --eeeeecCCCcccCCCCceEEEEcC-CCCEEEEE--eCC--eEEEEECCCce------------------EEEEeeCCC
Q 001310          923 --CRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HET--HLAIYEAEELT------------------CLKQWFPIS  977 (1103)
Q Consensus       923 --~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~~--~d~--~v~iwd~~~~~------------------~~~~~~~~h  977 (1103)
                        .....  .++.    ....++|+| +|++.++-  .+.  .|.+..  .|.                  .+..+... 
T Consensus       187 ~~~~i~a--~G~r----np~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~~-  257 (354)
T 3a9g_A          187 PNSPIWS--YGHR----NPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGSE-  257 (354)
T ss_dssp             TTCCEEE--ECCS----CCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTTC-
T ss_pred             CCCcEEE--EccC----CcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCCC-
Confidence              00110  1111    356899999 67766662  222  244332  221                  11111011 


Q ss_pred             CcCeEEEEEc-------cCCCEEEEEecCCcEEEEeCCC
Q 001310          978 SVPISQATFS-------CDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       978 ~~~v~~l~fs-------~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      ......++|.       .+|.++++.-..+.|...+++.
T Consensus       258 ~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~  296 (354)
T 3a9g_A          258 TWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD  296 (354)
T ss_dssp             CCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred             CcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence            3457788883       5677776665667788888775

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.28  E-value=0.056  Score=58.63  Aligned_cols=100  Identities=16%  Similarity=0.168  Sum_probs=63.4

Q ss_pred             CCeeEEEEecCCCEEEEEcCCeEEEEEcCCce--eeEEec---CCCCCeeEEEEcCCC----CCEEEEEeCC-----CeE
Q 001310          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFK--TILTIM---PPSPTATSLAFNPHD----NNVIAIGMDD-----STI  868 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~--~~~~~~---~~~~~i~~l~~s~~d----~~~lasg~~d-----g~v  868 (1103)
                      .....++|.|||+++++-..+.|.+++  +++  .+..+.   ........++++| +    +.+.++-...     +.|
T Consensus        31 ~~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v  107 (352)
T 2ism_A           31 EVPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQV  107 (352)
T ss_dssp             SCEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEE
T ss_pred             CCceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEE
Confidence            346789999999988777689999998  343  222222   1235678999999 5    4444433332     678


Q ss_pred             EEEEcCCce-----e-EEEec---cCCCCEEEEEEccCCCEEEEEe
Q 001310          869 LIYNARSSE-----V-ISKLE---GHSKRVTGLVFSDALNILVSSG  905 (1103)
Q Consensus       869 ~iwd~~~~~-----~-~~~l~---~h~~~V~~l~~s~dg~~l~s~s  905 (1103)
                      ..|+...+.     . +..+.   +.......++|.|||.+.++.+
T Consensus       108 ~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G  153 (352)
T 2ism_A          108 VRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTG  153 (352)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECC
T ss_pred             EEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEEC
Confidence            888877532     1 22233   1111235799999998777754

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=97.25  E-value=0.31  Score=52.40  Aligned_cols=230  Identities=14%  Similarity=0.130  Sum_probs=150.0

Q ss_pred             EEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccC
Q 001310          807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH  885 (1103)
Q Consensus       807 ~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h  885 (1103)
                      +.-.+|..+.+|.-...++.|+|+++...+....-. ..|.--.|-.  .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnle~K~klks~~~~-e~VvfWkWis--~~~l~lVT-~taVyHWsi~~~s~P~kvFdR~  145 (494)
T 1bpo_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (494)
T ss_dssp             EEEECSSSSCEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEEEE--TTEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             eeeeCCCCcEEEEecCCeEEEEchHHhhhhcceecC-CCceEEEecC--CCeEEEEc-CCeeEEecccCCCCchhheecc
Confidence            556788888888888889999999999888887643 3566666654  34666555 56899999974 3566777665


Q ss_pred             C----CCEEEEEEccCCCEEEEEeC-------CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC-----C
Q 001310          886 S----KRVTGLVFSDALNILVSSGG-------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----T  949 (1103)
Q Consensus       886 ~----~~V~~l~~s~dg~~l~s~s~-------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg-----~  949 (1103)
                      .    ..|..-..++|.+|++..|-       .|.+.+|.++.+.      -+..+||..     .-..|-.+|     .
T Consensus       146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~~  214 (494)
T 1bpo_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEEST  214 (494)
T ss_dssp             GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCC------EEEECCSEE-----EEEEEECTTCSSEEE
T ss_pred             hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccc------cchheeeee-----eeEEEecCCCCCCce
Confidence            3    46888888999999886542       4678899998744      344556532     112222232     2


Q ss_pred             EEEEEe----CCeEEEEECCCc---------eEEEEeeCC--CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEE
Q 001310          950 RFLLVH----ETHLAIYEAEEL---------TCLKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus       950 ~l~~~~----d~~v~iwd~~~~---------~~~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~ 1014 (1103)
                      +++.+.    .++++|-++...         +.+..+++.  -..-..++..|+.-..+..-+.-|.|.+||+++|..+.
T Consensus       215 lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~  294 (494)
T 1bpo_A          215 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  294 (494)
T ss_dssp             EEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeee
Confidence            333342    268999998542         111111222  14445578888877788888899999999999999986


Q ss_pred             eeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCC
Q 001310         1015 RILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073 (1103)
Q Consensus      1015 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~ 1073 (1103)
                      +-+-                   .+..|+.  -+.+.. ..-++.....|.|.--.+.+
T Consensus       295 ~nrI-------------------s~~~iF~--t~~~~~-~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          295 MNRI-------------------SGETIFV--TAPHEA-TAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEEC-------------------CSSCEEE--EEEETT-TTEEEEEETTCEEEEEEECT
T ss_pred             eecc-------------------cCCceEE--ecccCC-CCcEEEEccCceEEEEEEcc
Confidence            6551                   2334553  233333 23455556888877766643

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.23  E-value=0.013  Score=61.03  Aligned_cols=167  Identities=10%  Similarity=0.115  Sum_probs=109.2

Q ss_pred             cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEE-ecc----CC--CCEEEEEE---ccCCCEEEEEe----
Q 001310          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISK-LEG----HS--KRVTGLVF---SDALNILVSSG----  905 (1103)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~-l~~----h~--~~V~~l~~---s~dg~~l~s~s----  905 (1103)
                      ......--+++|.+.+++++++.-..|+|..|+...+..... +.+    ..  ..+..|.|   .|+++++++..    
T Consensus         9 ~~~~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~a   88 (334)
T 2p9w_A            9 KVKNLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKS   88 (334)
T ss_dssp             CCTTCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTT
T ss_pred             cCcccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEccccc
Confidence            334445567899884565666555899999999886643333 332    11  13578999   68888887644    


Q ss_pred             ---------CCCeEEEEEcC---CCceeeeeeeecCC-C------cccCCCCceEEEEcCCCCEEEE-EeC-CeEEEEEC
Q 001310          906 ---------GDAQIFVWDVD---GWGIQTCRSLQTPD-G------VMTLAPSETHIQFHKDQTRFLL-VHE-THLAIYEA  964 (1103)
Q Consensus       906 ---------~dg~I~iwd~~---~~~~~~~~~~~~~~-~------~~~~~~~v~~l~fs~dg~~l~~-~~d-~~v~iwd~  964 (1103)
                               .+..|..+|+.   +++......+.... +      ...  .....++..++|+.-++ +.. +.|..++.
T Consensus        89 f~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~--~~~nDvavD~~GnaYVt~s~~~~~I~rV~p  166 (334)
T 2p9w_A           89 FNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRP--FGVVQSAQDRDGNSYVAFALGMPAIARVSA  166 (334)
T ss_dssp             TCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCC--EEEEEEEECTTSCEEEEEEESSCEEEEECT
T ss_pred             ccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccc--cCCceeEECCCCCEEEeCCCCCCeEEEEeC
Confidence                     26779999999   66654432222111 0      000  13678999999998887 456 77777776


Q ss_pred             CCceEEEEeeCC-----CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          965 EELTCLKQWFPI-----SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       965 ~~~~~~~~~~~~-----h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      +. +.+..+...     .....+.|++.|||+.|++....|.+..+|+.+
T Consensus       167 dG-~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          167 DG-KTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             TS-CCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             CC-CEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            63 333332211     123467999999999999887799999999884

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.22  E-value=0.016  Score=62.14  Aligned_cols=110  Identities=13%  Similarity=0.110  Sum_probs=82.7

Q ss_pred             EEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCC----CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCce-----
Q 001310          807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSE-----  877 (1103)
Q Consensus       807 ~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~-----  877 (1103)
                      -...+.+|..++.+.++.||.-++......+.+...    ...|..+..+| +|++||..+ +..|.|-.+..+.     
T Consensus        25 ~~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~  102 (452)
T 3pbp_A           25 YIFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVED  102 (452)
T ss_dssp             EEEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCC
T ss_pred             EEEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCcc
Confidence            345677899999999999999998855445555443    23688999999 899999886 5579998887332     


Q ss_pred             -------eEEEecc------CCCCEEEEEEccC---CCEEEEEeCCCeEEEEEcCCC
Q 001310          878 -------VISKLEG------HSKRVTGLVFSDA---LNILVSSGGDAQIFVWDVDGW  918 (1103)
Q Consensus       878 -------~~~~l~~------h~~~V~~l~~s~d---g~~l~s~s~dg~I~iwd~~~~  918 (1103)
                             ..+.+.-      ...+|..+.|+|-   +..|++-..|++|++||+...
T Consensus       103 ~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s  159 (452)
T 3pbp_A          103 VSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNS  159 (452)
T ss_dssp             HHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCT
T ss_pred             cccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccC
Confidence                   0112221      2567999999995   468999999999999999973

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.18  E-value=0.12  Score=55.41  Aligned_cols=205  Identities=13%  Similarity=0.102  Sum_probs=120.9

Q ss_pred             CCeeEEEEecCCCEEEEE-------------cCCeEEEEEcCC--cee-eEEecC-----CCCCeeEEEEcCC-CCC--E
Q 001310          803 EAVPCFALSKNDAYLFSA-------------SGGVISLYIVMT--FKT-ILTIMP-----PSPTATSLAFNPH-DNN--V  858 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~-------------~dg~i~iwd~~~--~~~-~~~~~~-----~~~~i~~l~~s~~-d~~--~  858 (1103)
                      .....+++.|+|..++++             .+|.|.++|..+  .+. ...+.+     ..-....+.+.++ ++.  +
T Consensus        50 ~G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           50 NGSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             SCCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CCcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            355678889988777776             368899999873  221 112222     1235566776552 232  4


Q ss_pred             EEEEeC--CCeEEEEEcCCc----eeEEEeccC-CCCEEEEEEccCCCEEEEEeC---C------------CeEEEEEcC
Q 001310          859 IAIGMD--DSTILIYNARSS----EVISKLEGH-SKRVTGLVFSDALNILVSSGG---D------------AQIFVWDVD  916 (1103)
Q Consensus       859 lasg~~--dg~v~iwd~~~~----~~~~~l~~h-~~~V~~l~~s~dg~~l~s~s~---d------------g~I~iwd~~  916 (1103)
                      +++-..  +.+|.+|++..+    ..+..+.+. -...+.+++.++|.+.++...   |            ..=.+|.++
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d  209 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS  209 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEEC
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEE
Confidence            444333  467888877653    233444442 245789999999998887651   1            122344444


Q ss_pred             CCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCC-ceEEE-EeeCCCCcCeEEEEEcc-CCC
Q 001310          917 GWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEE-LTCLK-QWFPISSVPISQATFSC-DCR  991 (1103)
Q Consensus       917 ~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~-~~~~~-~~~~~h~~~v~~l~fs~-dg~  991 (1103)
                      .++...  ......       ....++||||++.|.++  ..+.|+.|+++. ++... ..+ ...+....+++.+ +|.
T Consensus       210 ~~~~~~--~~~~l~-------~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~-~~~g~PDGi~vD~e~G~  279 (355)
T 3sre_A          210 PNDVRV--VAEGFD-------FANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVL-SFDTLVDNISVDPVTGD  279 (355)
T ss_dssp             TTCCEE--EEEEES-------SEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEE-ECSSEEEEEEECTTTCC
T ss_pred             CCeEEE--eecCCc-------ccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEE-eCCCCCceEEEeCCCCc
Confidence            433211  111111       35789999999988885  567899999863 43221 112 1245678899999 598


Q ss_pred             EEEEEecC-CcEEEEeCC--CceeEEeec
Q 001310          992 MVFTSFVD-GTLSIHEAS--NLEVQCRIL 1017 (1103)
Q Consensus       992 ~l~t~~~d-g~v~vWd~~--~~~~~~~~~ 1017 (1103)
                      +.+++..+ +.|..|+-+  .+..+.++.
T Consensus       280 lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          280 LWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             EEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             EEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            87766544 345555544  355666665

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.17  E-value=0.21  Score=54.05  Aligned_cols=232  Identities=17%  Similarity=0.146  Sum_probs=117.6

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC---CCE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSL  410 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~  410 (1103)
                      -...+.|+|.|||+ ++++ ..++.|.++| .+|+ .....+            .  +..........|+|+||   +..
T Consensus        28 l~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~-~~~~~~------------~--v~~~g~~g~~gia~~pdf~~~g~   89 (354)
T 3a9g_A           28 LEVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGK-KLVASF------------D--VANVGEAGLLGLALHPEFPKKSW   89 (354)
T ss_dssp             CSCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCE-EEEEEC------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred             CCCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCc-eEeecc------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence            34789999999997 5555 4559999987 4454 111000            0  11223456889999998   555


Q ss_pred             EEEEeC----C----CeEEEEEecCCC-cc---ccc-eEec-cccccEEEEEEecCCCceEEEEEcCC------------
Q 001310          411 LGVAYS----K----HIVQLYAYHGGS-DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCGDD------------  464 (1103)
Q Consensus       411 las~~~----d----~~i~iwd~~~~~-~~---~~~-~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d------------  464 (1103)
                      |.++..    +    +.|..|+...+. .+   +.+ ..+. +.......++|.|||.  +.++.+..            
T Consensus        90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~  167 (354)
T 3a9g_A           90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL  167 (354)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred             EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence            554433    3    567788876541 11   100 0111 1111246799999997  45543321            


Q ss_pred             -CceEEEeCCCCc----------eeEEeecCCCceEEEEeeecCCccEEEEEECCC---eEEEEEcCCCC----------
Q 001310          465 -KTIKVWDAVTGS----------RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG---KIKAWLYDSLG----------  520 (1103)
Q Consensus       465 -~~i~iwd~~~~~----------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg---~i~iwd~~~~~----------  520 (1103)
                       +.|.-.+.. |+          .+.. .++.. ...++|++. ++.++++-...+   .|.+.  ..+.          
T Consensus       168 ~G~I~ri~~d-G~~p~~npf~~~~i~a-~G~rn-p~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~  241 (354)
T 3a9g_A          168 AGKILRVDEE-GRPPADNPFPNSPIWS-YGHRN-PQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGK  241 (354)
T ss_dssp             SSEEEEECTT-SCCCTTSSSTTCCEEE-ECCSC-CCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSC
T ss_pred             CeEEEEEcCC-CCCCCCCCCCCCcEEE-EccCC-cceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCC
Confidence             344444433 22          1211 23332 345677542 344444432221   12222  1111          


Q ss_pred             --------eeEEecCCCccEEEEEEc-------cCCCEEEEEecCCCCceeEEEEeCCCC-eeE--EEEecccccCCceE
Q 001310          521 --------ARVDYDAPGLGCTRMAYS-------ANGRRLFSCGTSKEGESFLVEWNESEG-AIK--RTYQGLQLQHNSVS  582 (1103)
Q Consensus       521 --------~~~~~~~~~~~i~~~~~s-------~dg~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~~~v~  582 (1103)
                              ....+.........++|.       .+|+++++...    .+.|...++... +..  ..+...  ....+.
T Consensus       242 ~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~----~~~v~~~~~~~~g~~~~~~~~~~~--~~~rp~  315 (354)
T 3a9g_A          242 AGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACLR----GSMLAAVNFGDNMEVRKISTFFKN--VFGRLR  315 (354)
T ss_dssp             CCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEETT----TTEEEEEEECGGGCEEEEEEECTT--TSCCEE
T ss_pred             CCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEcC----CCEEEEEEECCCCcccceeeeccC--CCCCee
Confidence                    112221223356778883       56766655432    345777777643 222  122211  125688


Q ss_pred             EEEEcCCCCEEEEEe
Q 001310          583 VVHFDTAKDQILAAG  597 (1103)
Q Consensus       583 ~~~~~~~~~~l~~~~  597 (1103)
                      .+++.|||...++..
T Consensus       316 ~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          316 DVVIDDDGGILISTS  330 (354)
T ss_dssp             EEEECTTSCEEEEEC
T ss_pred             EEEECCCCcEEEEEe
Confidence            999999986555543

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=97.16  E-value=0.049  Score=57.71  Aligned_cols=233  Identities=12%  Similarity=0.084  Sum_probs=123.5

Q ss_pred             CCCEEEEEc-C------CeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCCce-
Q 001310          813 NDAYLFSAS-G------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARSSE-  877 (1103)
Q Consensus       813 d~~~l~~~~-d------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~~~-  877 (1103)
                      ++.+++.|+ .      ..+.+||..+.+-..  .+....... +++. . ++++++.|+.+     ..+.+||..+.+ 
T Consensus        14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~-~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~   90 (301)
T 2vpj_A           14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYV-ASVS-L-HDRIYVIGGYDGRSRLSSVECLDYTADED   90 (301)
T ss_dssp             CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-E-TTEEEEECCBCSSCBCCCEEEEETTCCTT
T ss_pred             CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccc-cEEE-E-CCEEEEEcCCCCCccCceEEEEECCCCCC
Confidence            445555555 1      358899988765322  222111122 2222 2 56788888765     368999988765 


Q ss_pred             ----eEEEeccCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310          878 ----VISKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       878 ----~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg  948 (1103)
                          .+..+......-..+.+  ++++++.|+.++     .+.++|+.+.+-.....+....  .    ....+.  -++
T Consensus        91 ~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~----~~~~~~--~~~  160 (301)
T 2vpj_A           91 GVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAR--E----GAGLVV--ASG  160 (301)
T ss_dssp             CCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCC--B----SCEEEE--ETT
T ss_pred             CeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCc--c----cceEEE--ECC
Confidence                22222221122222222  677888877543     5889999887654433222211  1    112222  267


Q ss_pred             CEEEEE-eC-----CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeEEeec
Q 001310          949 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       949 ~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ++++.| .+     ..+.+||..+.+-...-... .......+..-+++.++.|+.+     ..+.+||+.+.+....- 
T Consensus       161 ~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~-  238 (301)
T 2vpj_A          161 VIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMA-TKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVT-  238 (301)
T ss_dssp             EEEEECCBCSSCBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEEC-
T ss_pred             EEEEECCCCCCcccceEEEEeCCCCcEEeCCCCC-cccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECC-
Confidence            766664 32     46999999887654331111 1111112223467777878764     46899999988765321 


Q ss_pred             cccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecC-----CcEEEEccCCCCCCCccCCc
Q 001310         1018 STAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPP 1083 (1103)
Q Consensus      1018 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~vw~~~~~~~~w~~~~~ 1083 (1103)
                         ..+...         .+|+      .+..   ++.+++.|+.+     ..|.+||+  ...+|...++
T Consensus       239 ---~~p~~r---------~~~~------~~~~---~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~  286 (301)
T 2vpj_A          239 ---SMTTPR---------CYVG------ATVL---RGRLYAIAGYDGNSLLSSIECYDP--IIDSWEVVTS  286 (301)
T ss_dssp             ---CCSSCC---------BSCE------EEEE---TTEEEEECCBCSSSBEEEEEEEET--TTTEEEEEEE
T ss_pred             ---CCCCcc---------ccee------EEEE---CCEEEEEcCcCCCcccccEEEEcC--CCCeEEEcCC
Confidence               112111         0121      1122   26777777765     35677777  3456876543

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=97.14  E-value=0.13  Score=55.81  Aligned_cols=107  Identities=14%  Similarity=0.146  Sum_probs=62.0

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC---CCEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD---GSLL  411 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd---g~~l  411 (1103)
                      ...+.++|.|||+ ++++ ..++.|.+++  +++......+            .  +..........++|+||   +.+|
T Consensus        31 ~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~~~~~------------~--v~~~g~~~p~gia~~pdf~~~g~l   92 (352)
T 2ism_A           31 EVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLSTYAEL------------S--VYHRGESGLLGLALHPRFPQEPYV   92 (352)
T ss_dssp             SCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEEEEEC------------C--CCCSTTCSEEEEEECTTTTTSCEE
T ss_pred             CCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccEeecc------------e--EeecCCCCceeEEECCCCCCCCEE
Confidence            4678999999998 5555 4559999998  4432111000            0  12223457889999998   5555


Q ss_pred             EEEeC-C-----CeEEEEEecCCCcc--ccc-eEec---cccccEEEEEEecCCCceEEEEE
Q 001310          412 GVAYS-K-----HIVQLYAYHGGSDA--RQQ-LEID---AHVGNVNDLAFSAPCKQISVITC  461 (1103)
Q Consensus       412 as~~~-d-----~~i~iwd~~~~~~~--~~~-~~l~---~h~~~v~~~~~s~d~~~~~l~s~  461 (1103)
                      .++.. .     +.|..|+...+..-  +.. ..+.   +.......++|.|||.  +.++.
T Consensus        93 Yv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~  152 (352)
T 2ism_A           93 YAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT  152 (352)
T ss_dssp             EEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred             EEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence            55433 2     66888888754211  111 1122   1111236899999996  44443

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=97.11  E-value=0.073  Score=56.51  Aligned_cols=232  Identities=10%  Similarity=0.012  Sum_probs=124.1

Q ss_pred             CEEEEEc---CCeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC----CeEEEEEcCCceeE--EEec
Q 001310          815 AYLFSAS---GGVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD----STILIYNARSSEVI--SKLE  883 (1103)
Q Consensus       815 ~~l~~~~---dg~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d----g~v~iwd~~~~~~~--~~l~  883 (1103)
                      .+++.|+   ...+.+||..+.+-..  .+.........+.+   ++++++.|+.+    ..+.+||..+.+-.  ..+.
T Consensus        13 ~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p   89 (306)
T 3ii7_A           13 YRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW---DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPP   89 (306)
T ss_dssp             EEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE---TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCS
T ss_pred             eEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE---CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCC
Confidence            3445554   2568999998765322  22222222223333   56788888765    67899999886532  2222


Q ss_pred             cCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e-
Q 001310          884 GHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-  955 (1103)
Q Consensus       884 ~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~-  955 (1103)
                      .....-..+.+  ++++++.|+.+      ..+.+||..+.+-.....+.....      ....+  .-++++++.| . 
T Consensus        90 ~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~~~~--~~~~~iyv~GG~~  159 (306)
T 3ii7_A           90 TPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRC------SHGMV--EANGLIYVCGGSL  159 (306)
T ss_dssp             SCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCB------SCEEE--EETTEEEEECCEE
T ss_pred             ccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcc------eeEEE--EECCEEEEECCCC
Confidence            21111222222  67888888765      458899998876444322221111      11222  2366666664 2 


Q ss_pred             --------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeEEeecccccc
Q 001310          956 --------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTAYL 1022 (1103)
Q Consensus       956 --------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~~~~~~~~~~ 1022 (1103)
                              -..+.+||..+.+-...-... .......+..-++++++.|+.+     ..+.+||+.+.+....-    ..
T Consensus       160 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~----~~  234 (306)
T 3ii7_A          160 GNNVSGRVLNSCEVYDPATETWTELCPMI-EARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVS----PM  234 (306)
T ss_dssp             SCTTTCEECCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECC----CC
T ss_pred             CCCCcccccceEEEeCCCCCeEEECCCcc-chhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECC----CC
Confidence                    345899999887654331111 1111112222367777777654     46899999988654221    11


Q ss_pred             CCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecC-----CcEEEEccCCCCCCCccCCcc
Q 001310         1023 RPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTN-----GEVYVIEPNEPGDTWAVLPPD 1084 (1103)
Q Consensus      1023 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~d-----g~v~vw~~~~~~~~w~~~~~~ 1084 (1103)
                      +...         .+|+.      +..   ++.+++.|+.+     ..+.+||+  ...+|...++.
T Consensus       235 p~~r---------~~~~~------~~~---~~~i~v~GG~~~~~~~~~~~~yd~--~~~~W~~~~~~  281 (306)
T 3ii7_A          235 PWKG---------VTVKC------AAV---GSIVYVLAGFQGVGRLGHILEYNT--ETDKWVANSKV  281 (306)
T ss_dssp             SCCB---------SCCEE------EEE---TTEEEEEECBCSSSBCCEEEEEET--TTTEEEEEEEE
T ss_pred             CCCc---------cceeE------EEE---CCEEEEEeCcCCCeeeeeEEEEcC--CCCeEEeCCCc
Confidence            2111         01111      122   26788888854     45777777  45678765443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.10  E-value=0.092  Score=56.91  Aligned_cols=235  Identities=10%  Similarity=0.081  Sum_probs=124.2

Q ss_pred             CeeEEEEecCCC-EEEEEcCCeEEEEEcCCceeeEE---e----cCCCCCeeEEEEcCC---CCCEEEEEeC-------C
Q 001310          804 AVPCFALSKNDA-YLFSASGGVISLYIVMTFKTILT---I----MPPSPTATSLAFNPH---DNNVIAIGMD-------D  865 (1103)
Q Consensus       804 ~v~~l~~s~d~~-~l~~~~dg~i~iwd~~~~~~~~~---~----~~~~~~i~~l~~s~~---d~~~lasg~~-------d  865 (1103)
                      ....|+|.|||+ ++++-..|.|++++.. ++....   +    .........++++|+   ++.+.++-..       .
T Consensus        19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~   97 (353)
T 2g8s_A           19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG   97 (353)
T ss_dssp             SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred             CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence            467899999999 7777668999999854 332211   1    112345689999993   3444443222       2


Q ss_pred             CeEEEEEcCCc--e--eEE----Eec-----cCCCCEEEEEEccCCCEEEEEeCC-------------CeEEEEEcCCCc
Q 001310          866 STILIYNARSS--E--VIS----KLE-----GHSKRVTGLVFSDALNILVSSGGD-------------AQIFVWDVDGWG  919 (1103)
Q Consensus       866 g~v~iwd~~~~--~--~~~----~l~-----~h~~~V~~l~~s~dg~~l~s~s~d-------------g~I~iwd~~~~~  919 (1103)
                      ..|..|++..+  +  ...    .+.     .|.  ...|+|.|||.+.++.+..             |.|.-.+.+. +
T Consensus        98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG-~  174 (353)
T 2g8s_A           98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQG-E  174 (353)
T ss_dssp             EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTS-C
T ss_pred             eEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCC-C
Confidence            35666766532  1  111    111     132  3569999999777765442             4566666553 1


Q ss_pred             eee-----------eeeeecCCCcccCCCCceEEEEcC-CCCEEEEE--eCCeEEEEECCCceE----------------
Q 001310          920 IQT-----------CRSLQTPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEELTC----------------  969 (1103)
Q Consensus       920 ~~~-----------~~~~~~~~~~~~~~~~v~~l~fs~-dg~~l~~~--~d~~v~iwd~~~~~~----------------  969 (1103)
                      ...           .....  .++.    ....++|.| +|++.++-  .++.=.|.-+..+.-                
T Consensus       175 ~p~~npf~~~~~~~~~i~a--~G~r----np~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~  248 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWS--YGIR----NPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFK  248 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEE--ECCS----EEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSC
T ss_pred             CCCCCCCcCCCCCCccEEE--EcCc----CccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCc
Confidence            100           00010  1111    267899999 66666652  222222222221111                


Q ss_pred             ---------------EEEeeCCCCcCeEEEEEcc-------CCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCC
Q 001310          970 ---------------LKQWFPISSVPISQATFSC-------DCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTS 1027 (1103)
Q Consensus       970 ---------------~~~~~~~h~~~v~~l~fs~-------dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~ 1027 (1103)
                                     +.. . .+......++|..       +|.++++.-..+.|...+++.++......   +..    
T Consensus       249 ~~~~~~~~~~~~~~P~~~-~-~~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~~----  319 (353)
T 2g8s_A          249 IPEAKGEIVAGTEQPVFY-W-KDSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---ILT----  319 (353)
T ss_dssp             CTTCCBSSCTTSCCCSEE-E-SSCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ESG----
T ss_pred             cCcccCCCCCCccCCeEE-e-CCCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---ccc----
Confidence                           000 1 1223566777763       46666666567777777777654432211   110    


Q ss_pred             CCceeeEeeccCCceeeEEEEECCCCCcEEEEEe-cCCcEEEEcc
Q 001310         1028 HDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGL-TNGEVYVIEP 1071 (1103)
Q Consensus      1028 ~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~-~dg~v~vw~~ 1071 (1103)
                               +..  -.+..+++.|+ |.+.++.. .+|  +||.+
T Consensus       320 ---------~~~--~rp~~v~~~pd-G~lyv~td~~~g--~I~ri  350 (353)
T 2g8s_A          320 ---------DRG--QRIRDVRTGPD-GYLYVLTDESSG--ELLKV  350 (353)
T ss_dssp             ---------GGC--CCEEEEEECTT-SCEEEEECSTTE--EEEEE
T ss_pred             ---------CCC--CceeEEEECCC-CcEEEEEeCCCC--EEEEE
Confidence                     001  13467888998 77666433 344  45555

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=97.05  E-value=0.13  Score=54.50  Aligned_cols=232  Identities=10%  Similarity=0.051  Sum_probs=122.1

Q ss_pred             CCCEEEEEc-C----CeEEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeE-
Q 001310          813 NDAYLFSAS-G----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVI-  879 (1103)
Q Consensus       813 d~~~l~~~~-d----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~-  879 (1103)
                      ++.+++.|+ +    ..+.+||..+.+-...  +......- +++..  ++++++.|+.++     .+.+||..+.+-. 
T Consensus        15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~   91 (302)
T 2xn4_A           15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRA-GMVYM--AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS   91 (302)
T ss_dssp             CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSC-EEEEE--TTEEEEESCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccc-eEEEE--CCEEEEEeCcCCCccccceEEECCCCCceee
Confidence            344555554 1    4588899887653222  22111111 22222  567888887653     6889998876532 


Q ss_pred             -EEeccCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE
Q 001310          880 -SKLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1103)
Q Consensus       880 -~~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  953 (1103)
                       ..+......-..+.  -++++++.|+.++     .+.+||+.+.+......+.....      .. +++. -++++++.
T Consensus        92 ~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~------~~-~~~~-~~~~iyv~  161 (302)
T 2xn4_A           92 VANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRS------SV-GVGV-VGGLLYAV  161 (302)
T ss_dssp             ECCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCB------SC-EEEE-ETTEEEEE
T ss_pred             CCCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCccc------Cc-eEEE-ECCEEEEE
Confidence             22221111122222  2678888888654     57788988866444322221111      11 2222 36666666


Q ss_pred             E-e-------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeEEeecccc
Q 001310          954 V-H-------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCRILSTA 1020 (1103)
Q Consensus       954 ~-~-------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~~~~~~~~ 1020 (1103)
                      | .       -..+.+||..+.+-...-.......-.++ ..-++++++.|+.+     ..+.+||+.+.+....-.   
T Consensus       162 GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~---  237 (302)
T 2xn4_A          162 GGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGV-GVLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVAD---  237 (302)
T ss_dssp             CCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECC---
T ss_pred             eCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccE-EEECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCC---
Confidence            4 2       23589999988765432111111111122 22367788888764     368999999886653211   


Q ss_pred             ccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCC-----cEEEEccCCCCCCCccCC
Q 001310         1021 YLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLP 1082 (1103)
Q Consensus      1021 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~vw~~~~~~~~w~~~~ 1082 (1103)
                       .+...         .+|+      .+..   ++.+++.|+.++     .|.+||+.  ..+|...+
T Consensus       238 -~~~~r---------~~~~------~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~--~~~W~~~~  283 (302)
T 2xn4_A          238 -MNMCR---------RNAG------VCAV---NGLLYVVGGDDGSCNLASVEYYNPT--TDKWTVVS  283 (302)
T ss_dssp             -CSSCC---------BSCE------EEEE---TTEEEEECCBCSSSBCCCEEEEETT--TTEEEECS
T ss_pred             -CCCcc---------ccCe------EEEE---CCEEEEECCcCCCcccccEEEEcCC--CCeEEECC
Confidence             11111         0121      1122   267788887664     48888883  45687665

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.94  E-value=0.11  Score=54.77  Aligned_cols=188  Identities=7%  Similarity=-0.005  Sum_probs=103.5

Q ss_pred             cCCCEEEEEc-C-----CeEEEEEcCCce-----eeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCC
Q 001310          812 KNDAYLFSAS-G-----GVISLYIVMTFK-----TILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARS  875 (1103)
Q Consensus       812 ~d~~~l~~~~-d-----g~i~iwd~~~~~-----~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~  875 (1103)
                      .++++++.|+ +     ..+.+||..+.+     .+..+........++.+   ++++++.|+.++     .+.+||..+
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~d~~~  137 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL---GDMIYVSGGFDGSRRHTSMERYDPNI  137 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE---TTEEEEECCBCSSCBCCEEEEEETTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE---CCEEEEEcccCCCcccceEEEEcCCC
Confidence            4667777665 2     358999987654     33222222222222333   567888887543     688999887


Q ss_pred             cee--EEEeccCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310          876 SEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       876 ~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg  948 (1103)
                      .+-  +..+......-.++.  -++++++.|+.+     ..+.+||+.+.+-.....+....  .    ....+.  -++
T Consensus       138 ~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--~----~~~~~~--~~~  207 (301)
T 2vpj_A          138 DQWSMLGDMQTAREGAGLVV--ASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKR--S----GAGVAL--LND  207 (301)
T ss_dssp             TEEEEEEECSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCC--B----SCEEEE--ETT
T ss_pred             CeEEECCCCCCCcccceEEE--ECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCccc--c----cceEEE--ECC
Confidence            653  232222111112222  267888888765     35889999887644432221111  1    112222  256


Q ss_pred             CEEEEE-e-----CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeE
Q 001310          949 TRFLLV-H-----ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1013 (1103)
Q Consensus       949 ~~l~~~-~-----d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~ 1013 (1103)
                      ++++.| .     ...+.+||..+.+-...-... .......+..-+++.++.|+.+     ..|.+||+++.+..
T Consensus       208 ~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p-~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  282 (301)
T 2vpj_A          208 HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMT-TPRCYVGATVLRGRLYAIAGYDGNSLLSSIECYDPIIDSWE  282 (301)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCS-SCCBSCEEEEETTEEEEECCBCSSSBEEEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCC-CcccceeEEEECCEEEEEcCcCCCcccccEEEEcCCCCeEE
Confidence            666664 3     246999999987654331111 1111112223477788888765     45888999887654

>2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A

Probab=96.83  E-value=0.00088  Score=53.41  Aligned_cols=35  Identities=34%  Similarity=0.569  Sum_probs=32.7

Q ss_pred             CCchhHHHHHHHHHhhhhcChhHHHHHHHHhcCCC
Q 001310            1 MSKLNKDLVFLILQFLNEEGFTESAHMLERESRFY   35 (1103)
Q Consensus         1 ~~~~~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~   35 (1103)
                      |+...+||-+||..||+|.||..||-+|++||+|.
T Consensus         1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~   35 (90)
T 2xtc_A            1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS   35 (90)
T ss_dssp             -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred             CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence            88999999999999999999999999999999983

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=96.79  E-value=0.73  Score=49.01  Aligned_cols=100  Identities=11%  Similarity=0.123  Sum_probs=57.8

Q ss_pred             CeeEEEEecCCCEEEEEc--CCeEEEEEcCCcee------------------eEEecCCCCCeeEEEEcCCCCCEEEEEe
Q 001310          804 AVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT------------------ILTIMPPSPTATSLAFNPHDNNVIAIGM  863 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~------------------~~~~~~~~~~i~~l~~s~~d~~~lasg~  863 (1103)
                      ....++|+|+|.+.++-.  ++.-.|--+..+..                  +..+..+......++|..  +.++....
T Consensus       203 Np~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~~~ap~G~~~~~--g~~~~~~l  280 (347)
T 3das_A          203 NVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTDEASPSGIAYAE--GSVWMAGL  280 (347)
T ss_dssp             BCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTTTCCEEEEEEET--TEEEEEES
T ss_pred             CcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCCCCCCcceEEEc--Cceeeccc
Confidence            345789999888777653  22222222222211                  112222223556778864  55666666


Q ss_pred             CCCeEEEEEcCCcee----EEEeccCCCCEEEEEEccCCCEEEEEe
Q 001310          864 DDSTILIYNARSSEV----ISKLEGHSKRVTGLVFSDALNILVSSG  905 (1103)
Q Consensus       864 ~dg~v~iwd~~~~~~----~~~l~~h~~~V~~l~~s~dg~~l~s~s  905 (1103)
                      ..+.|....+..+..    ...+.+..+.+..|+..|||.++++.+
T Consensus       281 ~~~~l~~v~~~~~~~~~~~e~~l~~~~gR~~dv~~~pDG~lyv~td  326 (347)
T 3das_A          281 RGERLWRIPLKGTAAAADPQAFLEGEYGRLRTVAPAGGDKLWLVTS  326 (347)
T ss_dssp             TTCSEEEEEEETTEESSCCEEESTTTSSCEEEEEEEETTEEEEEEC
T ss_pred             cCCEEEEEEecCCceecceEEeecCCCCCccEEEECCCCcEEEEEc
Confidence            666776667665432    233444557899999999998777654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.78  E-value=0.76  Score=49.08  Aligned_cols=207  Identities=10%  Similarity=0.039  Sum_probs=115.3

Q ss_pred             cEEEEEECCCCCEEEEEe------------CCCeEEEEEecCCCc-cccceEecc-----ccccEEEEEEec--CCCceE
Q 001310          398 SVNRVVWSPDGSLLGVAY------------SKHIVQLYAYHGGSD-ARQQLEIDA-----HVGNVNDLAFSA--PCKQIS  457 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~------------~d~~i~iwd~~~~~~-~~~~~~l~~-----h~~~v~~~~~s~--d~~~~~  457 (1103)
                      ..-.++..|+|..+++++            .+|.|.++|.++... .... .+.+     .......+.+.+  ++...+
T Consensus        51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L  129 (355)
T 3sre_A           51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL  129 (355)
T ss_dssp             CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred             CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence            344566788887666652            689999999974321 2222 2333     234667777766  454323


Q ss_pred             EEEEcC--CCceEEEeCCCCce----eEEeecC-CCceEEEEeeecCCccEEEEEEC-----------------CCeEEE
Q 001310          458 VITCGD--DKTIKVWDAVTGSR----TYSFEGH-GAPVYSLCPHAKENIHFIFSISV-----------------DGKIKA  513 (1103)
Q Consensus       458 l~s~~~--d~~i~iwd~~~~~~----~~~~~~~-~~~v~~~~~~~~~~~~~l~s~~~-----------------dg~i~i  513 (1103)
                      +++-..  +.+|.+|++..+..    +.++.+. -...+.+.+.+  +|.+.++...                 .|.|..
T Consensus       130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr  207 (355)
T 3sre_A          130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY  207 (355)
T ss_dssp             EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred             EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence            333332  56788887765322    2334332 23467777754  5666665431                 234444


Q ss_pred             EEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC-Cee--EEEEecccccCCceEEEEEcC-C
Q 001310          514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE-GAI--KRTYQGLQLQHNSVSVVHFDT-A  589 (1103)
Q Consensus       514 wd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~~~v~~~~~~~-~  589 (1103)
                      ++.  ++.. .....-...+.++|+||++.|+.+..   ....|+.|++.. ++.  .+.+. .   ......+++.+ +
T Consensus       208 ~d~--~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~-~---~g~PDGi~vD~e~  277 (355)
T 3sre_A          208 YSP--NDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLS-F---DTLVDNISVDPVT  277 (355)
T ss_dssp             ECT--TCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEE-C---SSEEEEEEECTTT
T ss_pred             EEC--CeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEe-C---CCCCceEEEeCCC
Confidence            443  3322 22222235678999999999888754   245699998863 332  22331 1   25678889999 5


Q ss_pred             CCEEEEEeCC-CcEEEEECC--CCeeEEEEc
Q 001310          590 KDQILAAGDD-HVIKIWDMN--KVQLLTTID  617 (1103)
Q Consensus       590 ~~~l~~~~~d-g~i~iwd~~--~~~~~~~~~  617 (1103)
                      |+..+++..+ +.|..|+..  .+..+..+.
T Consensus       278 G~lwva~~~~g~~v~~~~P~~~~~s~v~rI~  308 (355)
T 3sre_A          278 GDLWVGCHPNGMRIFFYDAENPPGSEVLRIQ  308 (355)
T ss_dssp             CCEEEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred             CcEEEEecCCceEEEEECCCCCCCCEEEEEE
Confidence            8877766533 344444543  244444444

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=96.72  E-value=0.45  Score=51.42  Aligned_cols=236  Identities=8%  Similarity=-0.026  Sum_probs=117.1

Q ss_pred             ccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEe----ccccccEEEEEEecC---CCceEEEEEcC------
Q 001310          397 VSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI----DAHVGNVNDLAFSAP---CKQISVITCGD------  463 (1103)
Q Consensus       397 ~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l----~~h~~~v~~~~~s~d---~~~~~l~s~~~------  463 (1103)
                      .....|+|.|||++|.++...|.|++++... ........+    .........++|+|+   +..+++.....      
T Consensus        18 ~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g-~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~   96 (353)
T 2g8s_A           18 DHPWALAFLPDNHGMLITLRGGELRHWQAGK-GLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKA   96 (353)
T ss_dssp             SSEEEEEECSTTCCEEEEETTTEEEEEETTT-EECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCE
T ss_pred             CCcEEEEEcCCCCEEEEEeCCceEEEEeCCC-ceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCc
Confidence            3567899999999444555778999888532 211111111    122345789999996   55433332221      


Q ss_pred             CCceEEEeCCCC--c--eeEE-eecC------CCceEEEEeeecCCccEEEEEEC-------------CCeEEEEEcCCC
Q 001310          464 DKTIKVWDAVTG--S--RTYS-FEGH------GAPVYSLCPHAKENIHFIFSISV-------------DGKIKAWLYDSL  519 (1103)
Q Consensus       464 d~~i~iwd~~~~--~--~~~~-~~~~------~~~v~~~~~~~~~~~~~l~s~~~-------------dg~i~iwd~~~~  519 (1103)
                      ...|..|+...+  .  .... +...      ......++|.  ++|.+.++.+.             .|.|..++.+..
T Consensus        97 ~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~--pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~  174 (353)
T 2g8s_A           97 GTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFD--GKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGE  174 (353)
T ss_dssp             EEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEEC--SSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSC
T ss_pred             eeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEEC--CCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCC
Confidence            235666666533  1  1111 1111      1113457774  46655555433             245666665532


Q ss_pred             C------------eeEEecCCCccEEEEEEcc-CCCEEEEEecCCCCceeEEEE--------eCCCC-------------
Q 001310          520 G------------ARVDYDAPGLGCTRMAYSA-NGRRLFSCGTSKEGESFLVEW--------NESEG-------------  565 (1103)
Q Consensus       520 ~------------~~~~~~~~~~~i~~~~~s~-dg~~l~~~~~~~~~~~~i~iw--------d~~~~-------------  565 (1103)
                      -            ....+...-.....++|.| +|++.++ -...++...|.+.        ....+             
T Consensus       175 ~p~~npf~~~~~~~~~i~a~G~rnp~gl~~d~~~g~l~~~-d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~~~  253 (353)
T 2g8s_A          175 IPDDNPFIKESGVRAEIWSYGIRNPQGMAMNPWSNALWLN-EHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPEAK  253 (353)
T ss_dssp             CCTTCTTTTSTTSCTTEEEECCSEEEEEEEETTTTEEEEE-EECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTTCC
T ss_pred             CCCCCCCcCCCCCCccEEEEcCcCccceEEECCCCCEEEE-ecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCccc
Confidence            0            1111211223467899999 5554443 3221111122221        11000             


Q ss_pred             --------eeEEEEecccccCCceEEEEEcC-------CCCEEEEEeCCCcEEEEECCCCeeEEEEcCC-CCCCCCceEE
Q 001310          566 --------AIKRTYQGLQLQHNSVSVVHFDT-------AKDQILAAGDDHVIKIWDMNKVQLLTTIDAG-GGLPENPRIC  629 (1103)
Q Consensus       566 --------~~~~~~~~~~~~~~~v~~~~~~~-------~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~  629 (1103)
                              ..+..+..    ......+.|..       ++.++++.-..+.|...++..++.......- .....+..++
T Consensus       254 ~~~~~~~~~P~~~~~~----~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~  329 (353)
T 2g8s_A          254 GEIVAGTEQPVFYWKD----SPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVR  329 (353)
T ss_dssp             BSSCTTSCCCSEEESS----CCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEE
T ss_pred             CCCCCCccCCeEEeCC----CcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEE
Confidence                    00011111    12456677753       4566666667778888887766544332111 1123578899


Q ss_pred             EecCCCEEEEE
Q 001310          630 FNKNGTLLAVI  640 (1103)
Q Consensus       630 ~s~~g~~l~~~  640 (1103)
                      +.|||.++++.
T Consensus       330 ~~pdG~lyv~t  340 (353)
T 2g8s_A          330 TGPDGYLYVLT  340 (353)
T ss_dssp             ECTTSCEEEEE
T ss_pred             ECCCCcEEEEE
Confidence            99999866543

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=96.68  E-value=0.23  Score=52.49  Aligned_cols=187  Identities=9%  Similarity=-0.011  Sum_probs=103.2

Q ss_pred             cCCCEEEEEc-C----CeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC------CeEEEEEcCCcee
Q 001310          812 KNDAYLFSAS-G----GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD------STILIYNARSSEV  878 (1103)
Q Consensus       812 ~d~~~l~~~~-d----g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d------g~v~iwd~~~~~~  878 (1103)
                      -++++++.|+ +    ..+.+||..+.+-..  .+........++.+   ++++++.|+.+      ..+.+||..+.+-
T Consensus        54 ~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W  130 (306)
T 3ii7_A           54 WDNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA---EGKIYTSGGSEVGNSALYLFECYDTRTESW  130 (306)
T ss_dssp             ETTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE---TTEEEEECCBBTTBSCCCCEEEEETTTTEE
T ss_pred             ECCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE---CCEEEEECCCCCCCcEeeeEEEEeCCCCce
Confidence            3667777765 2    568899988765332  22222222222333   56788888765      4689999988653


Q ss_pred             EE--EeccCCCCEEEEEEccCCCEEEEEeC---------CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310          879 IS--KLEGHSKRVTGLVFSDALNILVSSGG---------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       879 ~~--~l~~h~~~V~~l~~s~dg~~l~s~s~---------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  947 (1103)
                      ..  .+......-.++.  -++++++.|+.         -..+.+||+.+.+-.....+.....      .-..+.+  +
T Consensus       131 ~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~--~  200 (306)
T 3ii7_A          131 HTKPSMLTQRCSHGMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARK------NHGLVFV--K  200 (306)
T ss_dssp             EEECCCSSCCBSCEEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCB------SCEEEEE--T
T ss_pred             EeCCCCcCCcceeEEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhh------cceEEEE--C
Confidence            22  2221111112222  36777777764         3448899999876444322211111      1122222  6


Q ss_pred             CCEEEEE-eC-----CeEEEEECCCceEEEEeeCCC-CcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeE
Q 001310          948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1013 (1103)
Q Consensus       948 g~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~ 1013 (1103)
                      +++++.| .+     ..+.+||..+.+-...-.... ......+.  -+++.++.|+.+     ..+.+||..+.+..
T Consensus       201 ~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~  276 (306)
T 3ii7_A          201 DKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAA--VGSIVYVLAGFQGVGRLGHILEYNTETDKWV  276 (306)
T ss_dssp             TEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEE--ETTEEEEEECBCSSSBCCEEEEEETTTTEEE
T ss_pred             CEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEE--ECCEEEEEeCcCCCeeeeeEEEEcCCCCeEE
Confidence            6666664 22     468999998876443211111 11222222  377888888854     56899999987655

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.67  E-value=0.13  Score=54.44  Aligned_cols=235  Identities=12%  Similarity=0.036  Sum_probs=115.2

Q ss_pred             CCEEEEEeCC----CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC-----CceEEEeCCCCcee
Q 001310          408 GSLLGVAYSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD-----KTIKVWDAVTGSRT  478 (1103)
Q Consensus       408 g~~las~~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d-----~~i~iwd~~~~~~~  478 (1103)
                      +..++.|+.+    ..+.+||+.+.+- .....+......-..+.  -+++  +++.|+.+     ..+.+||..+.+-.
T Consensus        16 ~~i~v~GG~~~~~~~~~~~~d~~~~~W-~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~W~   90 (302)
T 2xn4_A           16 KLMVVVGGQAPKAIRSVECYDFKEERW-HQVAELPSRRCRAGMVY--MAGL--VFAVGGFNGSLRVRTVDSYDPVKDQWT   90 (302)
T ss_dssp             EEEEEECCBSSSBCCCEEEEETTTTEE-EEECCCSSCCBSCEEEE--ETTE--EEEESCBCSSSBCCCEEEEETTTTEEE
T ss_pred             CEEEEECCCCCCCCCcEEEEcCcCCcE-eEcccCCcccccceEEE--ECCE--EEEEeCcCCCccccceEEECCCCCcee
Confidence            4455555533    3578888876531 11111111111111222  2555  56666644     35888998776533


Q ss_pred             EE--eecCCCceEEEEeeecCCccEEEEEECCC-----eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          479 YS--FEGHGAPVYSLCPHAKENIHFIFSISVDG-----KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       479 ~~--~~~~~~~v~~~~~~~~~~~~~l~s~~~dg-----~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      ..  +......-..+.+    ++.+++.|+.++     .+.+||..+.+-...-..........+..-+++.++.++.+.
T Consensus        91 ~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~  166 (302)
T 2xn4_A           91 SVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVVGGLLYAVGGYDV  166 (302)
T ss_dssp             EECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEECCEET
T ss_pred             eCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEECCEEEEEeCCCC
Confidence            22  1111111112222    456777777553     467777776543332211111111111223666666665433


Q ss_pred             CC---ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEEEcCCCCCC
Q 001310          552 EG---ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLP  623 (1103)
Q Consensus       552 ~~---~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~  623 (1103)
                      ..   ...+.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||..+.+-...-.....  
T Consensus       167 ~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~--  241 (302)
T 2xn4_A          167 ASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL--NNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC--  241 (302)
T ss_dssp             TTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC--
T ss_pred             CCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE--CCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc--
Confidence            22   3458899998876544322111 1122222333  45666666653     4689999988765544322211  


Q ss_pred             CCceEEEecCCCEEEEEECCC-----eEEEEEcCCCCe
Q 001310          624 ENPRICFNKNGTLLAVIANEN-----RIKILETPESNS  656 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg-----~i~iw~~~~~~~  656 (1103)
                      .....+..-++++++.|+.++     .+.+||..+.+.
T Consensus       242 r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W  279 (302)
T 2xn4_A          242 RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTDKW  279 (302)
T ss_dssp             CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred             cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCCeE
Confidence            112222333677777777543     478888877643

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.67  E-value=0.23  Score=52.75  Aligned_cols=180  Identities=11%  Similarity=0.100  Sum_probs=97.4

Q ss_pred             CeEEEEEcCCceeeE-EecCCCCCeeEEEEcCCCCCEEEEEeC-----C------CeEEEEEcCCceeEE--EeccCCCC
Q 001310          823 GVISLYIVMTFKTIL-TIMPPSPTATSLAFNPHDNNVIAIGMD-----D------STILIYNARSSEVIS--KLEGHSKR  888 (1103)
Q Consensus       823 g~i~iwd~~~~~~~~-~~~~~~~~i~~l~~s~~d~~~lasg~~-----d------g~v~iwd~~~~~~~~--~l~~h~~~  888 (1103)
                      ..+.+||..+++-.. .+..+.......+... ++++++.|+.     .      ..+.+||..+.+-..  .+......
T Consensus        13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~   91 (315)
T 4asc_A           13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL   91 (315)
T ss_dssp             TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred             CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence            678899998776432 2222223333333444 6778888873     1      137888988765321  12111111


Q ss_pred             EEEEEEccCCCEEEEEeCC--------CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e-C--
Q 001310          889 VTGLVFSDALNILVSSGGD--------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H-E--  956 (1103)
Q Consensus       889 V~~l~~s~dg~~l~s~s~d--------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~-d--  956 (1103)
                      -..+.+  ++++++.|+.+        ..+.++|..+++-.....+....        ....+..-++++++.| . +  
T Consensus        92 ~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r--------~~~~~~~~~~~iyv~GG~~~~~  161 (315)
T 4asc_A           92 FGLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVV--------YGHTVLSHMDLVYVIGGKGSDR  161 (315)
T ss_dssp             CEEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCC--------BSCEEEEETTEEEEECCBCTTS
T ss_pred             eeEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcc--------cceeEEEECCEEEEEeCCCCCC
Confidence            112222  67777777743        35889999886644322221111        1122223466666664 3 2  


Q ss_pred             ---CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC-----cEEEEeCCCceeEE
Q 001310          957 ---THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQC 1014 (1103)
Q Consensus       957 ---~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg-----~v~vWd~~~~~~~~ 1014 (1103)
                         ..+.+||..+.+-... ...........+..-+++.++.|+.++     .+.+||+.+.+...
T Consensus       162 ~~~~~~~~yd~~~~~W~~~-~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  226 (315)
T 4asc_A          162 KCLNKMCVYDPKKFEWKEL-APMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAP  226 (315)
T ss_dssp             CBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEE
T ss_pred             cccceEEEEeCCCCeEEEC-CCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEE
Confidence               3699999988764432 111111111122234778888887654     58899998886553

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.63  E-value=0.16  Score=53.82  Aligned_cols=234  Identities=10%  Similarity=0.039  Sum_probs=122.8

Q ss_pred             ecCCCEEEEEc-----CCeEEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeC----C-----CeEEEEEcC
Q 001310          811 SKNDAYLFSAS-----GGVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMD----D-----STILIYNAR  874 (1103)
Q Consensus       811 s~d~~~l~~~~-----dg~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~----d-----g~v~iwd~~  874 (1103)
                      .-++.+++.|+     -..+.+||..+.+-...  +....... +++..  ++++++.|+.    +     ..+.+||..
T Consensus        22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~-~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~~d~~   98 (308)
T 1zgk_A           22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGL-AGCVV--GGLLYAVGGRNNSPDGNTDSSALDCYNPM   98 (308)
T ss_dssp             CCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEEE--TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred             CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccc-eEEEE--CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence            34566666665     14689999887653322  22111122 22222  5677787776    2     368899988


Q ss_pred             CceeE--EEeccCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC
Q 001310          875 SSEVI--SKLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       875 ~~~~~--~~l~~h~~~V~~l~~s~dg~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d  947 (1103)
                      +.+-.  ..+......-..+.+  ++++++.|+.+     ..+.+||..+.+......+.....      .-..+.+  +
T Consensus        99 ~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~--~  168 (308)
T 1zgk_A           99 TNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRI------GVGVAVL--N  168 (308)
T ss_dssp             TTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCB------SCEEEEE--T
T ss_pred             CCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCcccc------ceEEEEE--C
Confidence            76532  222211111222222  67788877644     358889998866443222221111      1122222  6


Q ss_pred             CCEEEEE-eC-----CeEEEEECCCceEEEEeeCCC-CcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeEEe
Q 001310          948 QTRFLLV-HE-----THLAIYEAEELTCLKQWFPIS-SVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQCR 1015 (1103)
Q Consensus       948 g~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h-~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~~~ 1015 (1103)
                      +++++.| .+     ..+.+||..+.+-...-.... ...-..+.  -+++.++.|+.+     ..+.+||+.+.+....
T Consensus       169 ~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~  246 (308)
T 1zgk_A          169 RLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV--LHNCIYAAGGYDGQDQLNSVERYDVETETWTFV  246 (308)
T ss_dssp             TEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEC
T ss_pred             CEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE--ECCEEEEEeCCCCCCccceEEEEeCCCCcEEEC
Confidence            6666664 32     469999998776543211111 11112222  377778878764     5699999998865432


Q ss_pred             eccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCC-----cEEEEccCCCCCCCccCCc
Q 001310         1016 ILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNG-----EVYVIEPNEPGDTWAVLPP 1083 (1103)
Q Consensus      1016 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg-----~v~vw~~~~~~~~w~~~~~ 1083 (1103)
                      -    ..+...         .+|+.      +..   ++.+++.|+.++     .|.+||+  ...+|...++
T Consensus       247 ~----~~p~~r---------~~~~~------~~~---~~~i~v~GG~~~~~~~~~v~~yd~--~~~~W~~~~~  295 (308)
T 1zgk_A          247 A----PMKHRR---------SALGI------TVH---QGRIYVLGGYDGHTFLDSVECYDP--DTDTWSEVTR  295 (308)
T ss_dssp             C----CCSSCC---------BSCEE------EEE---TTEEEEECCBCSSCBCCEEEEEET--TTTEEEEEEE
T ss_pred             C----CCCCCc---------cceEE------EEE---CCEEEEEcCcCCCcccceEEEEcC--CCCEEeecCC
Confidence            1    112111         01211      112   267777777543     4677887  3457866533

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=96.45  E-value=0.37  Score=52.33  Aligned_cols=241  Identities=11%  Similarity=0.043  Sum_probs=119.7

Q ss_pred             cCCCEEEEEc--CCeEEEEEcCC----ceeeEEec-CCCCCeeEEEEcCCCCCEEEEEeC-C---------CeEEEEEcC
Q 001310          812 KNDAYLFSAS--GGVISLYIVMT----FKTILTIM-PPSPTATSLAFNPHDNNVIAIGMD-D---------STILIYNAR  874 (1103)
Q Consensus       812 ~d~~~l~~~~--dg~i~iwd~~~----~~~~~~~~-~~~~~i~~l~~s~~d~~~lasg~~-d---------g~v~iwd~~  874 (1103)
                      -++++++.|+  ...+.+||..+    .+.+..+. .......++.+   ++++++.|+. +         ..+.+||..
T Consensus        18 ~~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~---~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~   94 (357)
T 2uvk_A           18 DNDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI---DGNLYVFGGIGKNSEGLTQVFNDVHKYNPK   94 (357)
T ss_dssp             ETTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE---TTEEEEECCEEECTTSCEEECCCEEEEETT
T ss_pred             ECCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE---CCEEEEEcCCCCCCCccceeeccEEEEeCC
Confidence            3777777776  36799999863    23332232 11122222333   5677887776 2         478999998


Q ss_pred             CceeEE--Eec-cCCCCEEEEEEccCCCEEEEEeCC---------------------------------------CeEEE
Q 001310          875 SSEVIS--KLE-GHSKRVTGLVFSDALNILVSSGGD---------------------------------------AQIFV  912 (1103)
Q Consensus       875 ~~~~~~--~l~-~h~~~V~~l~~s~dg~~l~s~s~d---------------------------------------g~I~i  912 (1103)
                      +.+-..  .+. .....-.++.  .++++++.|+.+                                       ..+.+
T Consensus        95 ~~~W~~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  172 (357)
T 2uvk_A           95 TNSWVKLMSHAPMGMAGHVTFV--HNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLS  172 (357)
T ss_dssp             TTEEEECSCCCSSCCSSEEEEE--ETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEE
T ss_pred             CCcEEECCCCCCcccccceEEE--ECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEE
Confidence            765322  222 1111122222  578888888865                                       46889


Q ss_pred             EEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e------CCeEEEEEC--CCceEEEEe-eCCCCcCeE
Q 001310          913 WDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H------ETHLAIYEA--EELTCLKQW-FPISSVPIS  982 (1103)
Q Consensus       913 wd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~------d~~v~iwd~--~~~~~~~~~-~~~h~~~v~  982 (1103)
                      ||..+.+-.....+.....      .-.+++. -++++++.| .      ...+..||+  .+.+-...- .........
T Consensus       173 yd~~~~~W~~~~~~p~~~~------~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~  245 (357)
T 2uvk_A          173 FDPSTQQWSYAGESPWYGT------AGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG  245 (357)
T ss_dssp             EETTTTEEEEEEECSSCCC------BSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred             EeCCCCcEEECCCCCCCCc------ccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence            9998876544322221111      0012222 256666663 2      235778887  444332210 111111112


Q ss_pred             EEEEccCCCEEEEEecC----------------------CcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCC
Q 001310          983 QATFSCDCRMVFTSFVD----------------------GTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCL 1040 (1103)
Q Consensus       983 ~l~fs~dg~~l~t~~~d----------------------g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1040 (1103)
                      ..+...++++++.|+.+                      ..+.+||+.+.+....    ..++...         .+|+ 
T Consensus       246 ~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~----~~~p~~r---------~~~~-  311 (357)
T 2uvk_A          246 GFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKS----GELSQGR---------AYGV-  311 (357)
T ss_dssp             CEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEE----EECSSCC---------BSSE-
T ss_pred             ceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeC----CCCCCCc---------ccce-
Confidence            22334567777777732                      2578899987765432    1122111         0122 


Q ss_pred             ceeeEEEEECCCCCcEEEEEecCCc----EEEEccCCCCCCCccCCcccc
Q 001310         1041 HVYPHAIAAHPLKPTQFAVGLTNGE----VYVIEPNEPGDTWAVLPPDEI 1086 (1103)
Q Consensus      1041 ~v~~~~~~~~p~~~~~l~~~~~dg~----v~vw~~~~~~~~w~~~~~~~~ 1086 (1103)
                           ++...   +.+++.||.++.    =-+|-+.-.+.+|....|..+
T Consensus       312 -----~~~~~---~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~~  353 (357)
T 2uvk_A          312 -----SLPWN---NSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEHH  353 (357)
T ss_dssp             -----EEEET---TEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC----
T ss_pred             -----eEEeC---CEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeecccc
Confidence                 12222   678888886542    235655557888887777654

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=96.44  E-value=0.33  Score=51.55  Aligned_cols=232  Identities=9%  Similarity=-0.029  Sum_probs=112.7

Q ss_pred             EEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC-----C------CceEEEeCCCCceeE
Q 001310          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD-----D------KTIKVWDAVTGSRTY  479 (1103)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~-----d------~~i~iwd~~~~~~~~  479 (1103)
                      ++.|+  ..+.+||..+++-..  ..+..........+...+++  +++.|+.     .      ..+.+||..+++-..
T Consensus         8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~   81 (315)
T 4asc_A            8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLG   81 (315)
T ss_dssp             EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEE
T ss_pred             EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeEEE
Confidence            34444  568899988765221  22222112222333344565  5555652     1      127788887765322


Q ss_pred             EeecCCCceE--EEEeeecCCccEEEEEECC--------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310          480 SFEGHGAPVY--SLCPHAKENIHFIFSISVD--------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       480 ~~~~~~~~v~--~~~~~~~~~~~~l~s~~~d--------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                       +..-..+-.  +++.  . ++.+++.|+.+        ..+.+||..+.+-...-..........+...+++.++.++.
T Consensus        82 -~~~~p~~r~~~~~~~--~-~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~  157 (315)
T 4asc_A           82 -MPPLPSPRCLFGLGE--A-LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGK  157 (315)
T ss_dssp             -CCCBSSCEESCEEEE--E-TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCB
T ss_pred             -CCCCCcchhceeEEE--E-CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCC
Confidence             111111111  1111  1 44566666632        34788888765432211111111111222346666666654


Q ss_pred             CC--CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC-----cEEEEECCCCeeEEEEcCCCCC
Q 001310          550 SK--EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH-----VIKIWDMNKVQLLTTIDAGGGL  622 (1103)
Q Consensus       550 ~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~  622 (1103)
                      ..  .....+.+||+.+.+-...-.... ....-..+.+  ++..++.|+.++     .+.+||+.+.+-...-..... 
T Consensus       158 ~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-  233 (315)
T 4asc_A          158 GSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH--DGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-  233 (315)
T ss_dssp             CTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE--TTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC-
T ss_pred             CCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE--CCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence            21  112458999998876543322111 1122222333  556666777544     588899988765544332221 


Q ss_pred             CCCceEEEecCCCEEEEEECC--------------CeEEEEEcCCCCee
Q 001310          623 PENPRICFNKNGTLLAVIANE--------------NRIKILETPESNSV  657 (1103)
Q Consensus       623 ~~v~~v~~s~~g~~l~~~~~d--------------g~i~iw~~~~~~~~  657 (1103)
                       .....+..-++++++.|+.+              ..+.+||..+.+..
T Consensus       234 -r~~~~~~~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~  281 (315)
T 4asc_A          234 -RSSLSLVSLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE  281 (315)
T ss_dssp             -CBSCEEEEETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred             -ccceeEEEECCEEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence             11222223356777777753              23667887766443

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=96.42  E-value=0.2  Score=62.33  Aligned_cols=198  Identities=13%  Similarity=0.121  Sum_probs=124.8

Q ss_pred             EEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC-ceeEEEeccC
Q 001310          807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS-SEVISKLEGH  885 (1103)
Q Consensus       807 ~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~-~~~~~~l~~h  885 (1103)
                      +.-.+|..+.+|.-...++.|+|+.+...+....- ..+|.--.|-.  .+.|+..+ +..|+-|++.. ..+++.+..|
T Consensus        70 sAIMnP~~~iiALrag~~lQiFnl~~k~klks~~~-~e~VvfWkWis--~~~l~lVT-~~aVyHW~~~~~s~P~k~fdR~  145 (1630)
T 1xi4_A           70 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTM-TDDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH  145 (1630)
T ss_pred             hhccCCCcceEEEecCCeEEEeehHHhhhhccccc-CCCceEEEecC--CCeeEEEc-CCeEEEeccCCCCccHHHHhcc
Confidence            34567888888888888899999998887777653 34566666764  34566555 45799999974 3455555555


Q ss_pred             ----CCCEEEEEEccCCCEEEEEe-------CCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEE---cCCCCEE
Q 001310          886 ----SKRVTGLVFSDALNILVSSG-------GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF---HKDQTRF  951 (1103)
Q Consensus       886 ----~~~V~~l~~s~dg~~l~s~s-------~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~f---s~dg~~l  951 (1103)
                          ...|..-..+++.+|++..|       -.|.+.+|+++.+.      -+..+||..   .-..+.+   .+....+
T Consensus       146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~------sQ~iegha~---~F~~~~~~~~~~~~~l~  216 (1630)
T 1xi4_A          146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA---SFAQFKMEGNAEESTLF  216 (1630)
T ss_pred             hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc------chhhhHhHh---hhheeccCCCCCCceEE
Confidence                45688888899999988654       24788899888633      334455532   1111111   1122333


Q ss_pred             EEEe----CCeEEEEECCCc---eE------EEEeeCC--CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEee
Q 001310          952 LLVH----ETHLAIYEAEEL---TC------LKQWFPI--SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016 (1103)
Q Consensus       952 ~~~~----d~~v~iwd~~~~---~~------~~~~~~~--h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~ 1016 (1103)
                      +.+.    .++++|-++...   ..      +...+++  -..-..++..|+.-..+...+.-|.|.++|+.||..+.+-
T Consensus       217 ~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~  296 (1630)
T 1xi4_A          217 CFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMN  296 (1630)
T ss_pred             EEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhc
Confidence            3332    267888888542   11      1111111  1233345666776677777788899999999999987443


Q ss_pred             c
Q 001310         1017 L 1017 (1103)
Q Consensus      1017 ~ 1017 (1103)
                      +
T Consensus       297 r  297 (1630)
T 1xi4_A          297 R  297 (1630)
T ss_pred             c
Confidence            3

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=96.21  E-value=0.034  Score=58.89  Aligned_cols=201  Identities=9%  Similarity=0.016  Sum_probs=107.4

Q ss_pred             CEEEEEeCCCeEEEEEcCCceeEEEeccC-CCCEEEEEE--cc-CCCEEEEE-eCCCeEEEEEcCCCceeeeeeeecCCC
Q 001310          857 NVIAIGMDDSTILIYNARSSEVISKLEGH-SKRVTGLVF--SD-ALNILVSS-GGDAQIFVWDVDGWGIQTCRSLQTPDG  931 (1103)
Q Consensus       857 ~~lasg~~dg~v~iwd~~~~~~~~~l~~h-~~~V~~l~~--s~-dg~~l~s~-s~dg~I~iwd~~~~~~~~~~~~~~~~~  931 (1103)
                      .++++++.||.|.-.|..+|+.+.+++.. ..++....-  .+ ++..++.. +.||.|..++..+|.......+..+..
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~   90 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS   90 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence            37888999999999999999999888754 122222110  01 33344433 589999999998875443222221111


Q ss_pred             cccCCCCceE---EEE------cCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcC------eEEEEEc-----cCCC
Q 001310          932 VMTLAPSETH---IQF------HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVP------ISQATFS-----CDCR  991 (1103)
Q Consensus       932 ~~~~~~~v~~---l~f------s~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~------v~~l~fs-----~dg~  991 (1103)
                      ..    ++..   ...      +.+|..++.+.+++++..|+.+|+.+.++..+....      ..+....     ..+.
T Consensus        91 ~S----P~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           91 TS----PLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             TC----SEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CC
T ss_pred             cc----ccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCC
Confidence            00    1110   001      244544444799999999999999998865432111      1111110     1235


Q ss_pred             EEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310          992 MVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus       992 ~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                      .++.+..+..+.+.+ .+|+ +..+....+.+....            ..+.. ....+.+ +.. ++++.||.|.-.|.
T Consensus       167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~------------~~~~~-~~~~s~D-g~~-~~~~~dg~v~A~d~  229 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLD------------VPLAL-QNTFSKD-GMC-IAPFRDKSLLASDL  229 (339)
T ss_dssp             EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTT------------HHHHT-TCSSCSS-SCC-EEEETTTEEEEECS
T ss_pred             eEEEecceEEEEEEC-CCCC-eEEEecccccccccc------------ccccc-ccccccC-CcE-EEECCCCEEEEEEC
Confidence            677777777888777 5564 333322222221110            00000 0000112 333 44677888888887


Q ss_pred             CCCCCCC
Q 001310         1072 NEPGDTW 1078 (1103)
Q Consensus      1072 ~~~~~~w 1078 (1103)
                      ......|
T Consensus       230 ~~G~~~W  236 (339)
T 2be1_A          230 DFRIARW  236 (339)
T ss_dssp             TTCCEEE
T ss_pred             CCCcEEE
Confidence            6666677

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.16  E-value=0.045  Score=52.89  Aligned_cols=145  Identities=9%  Similarity=0.027  Sum_probs=83.6

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee------EEEec--cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEc
Q 001310          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV------ISKLE--GHSKRVTGLVFSDALNILVSSGGDAQIFVWDV  915 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~------~~~l~--~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~  915 (1103)
                      ..++.++|+| ++.+.++  .+|.++-.+..++..      -..+-  +-.. -.++.|.|+|.+.++  .||.|+-++-
T Consensus        41 ~~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~p  114 (236)
T 1tl2_A           41 SNFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASP  114 (236)
T ss_dssp             TTCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESC
T ss_pred             ccceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCC
Confidence            3677999999 8887776  677776666544211      11110  1111 367899999998888  5698887765


Q ss_pred             CCCceeeee--eeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceE------EEEeeCCCCcCeEEEEEc
Q 001310          916 DGWGIQTCR--SLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTC------LKQWFPISSVPISQATFS  987 (1103)
Q Consensus       916 ~~~~~~~~~--~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~------~~~~~~~h~~~v~~l~fs  987 (1103)
                      .+.......  -..+-.+.-.   .+..+.|.|+|.+-++. |+.++-....++..      ...+-......-.-+.|+
T Consensus       115 P~~~~~~Wl~~a~~vg~~gw~---~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~  190 (236)
T 1tl2_A          115 PQSDTDNWIARATEVGSGGWS---GFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFS  190 (236)
T ss_dssp             CCSTTCCHHHHSEEEECSSGG---GEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEEC
T ss_pred             CcCCCCceeccccEeccCCCC---ceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceeccCCcceEEEEEEC
Confidence            332211100  0011111111   47899999999999999 88865444332210      011111223344456788


Q ss_pred             cCCCEEEEEecCC
Q 001310          988 CDCRMVFTSFVDG 1000 (1103)
Q Consensus       988 ~dg~~l~t~~~dg 1000 (1103)
                      ++|...++.  +|
T Consensus       191 ~~G~l~~v~--~g  201 (236)
T 1tl2_A          191 SVGTLFGVQ--GG  201 (236)
T ss_dssp             TTSCEEEEE--TT
T ss_pred             CCCcEEEEe--CC
Confidence            888777655  66

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.09  E-value=0.21  Score=53.65  Aligned_cols=108  Identities=20%  Similarity=0.213  Sum_probs=78.3

Q ss_pred             CeeEEEEecCCCEEEEEcCCeEEEEEcCCce------------eeEEecC------CCCCeeEEEEcCCC--CCEEEEEe
Q 001310          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFK------------TILTIMP------PSPTATSLAFNPHD--NNVIAIGM  863 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~------------~~~~~~~------~~~~i~~l~~s~~d--~~~lasg~  863 (1103)
                      .+..+..+|+|++||..++..|.|..+..+.            ..+.+.-      ...+|..+.|+|-.  +..|++-.
T Consensus        67 ~i~qlvlSpsG~lLAl~g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLt  146 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFNDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLK  146 (452)
T ss_dssp             TTCEEEECTTSSEEEEECSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEE
T ss_pred             ceeEEEECCCCCEEEEecCCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEe
Confidence            6788999999999999999999999987321            0112221      35689999999932  45899999


Q ss_pred             CCCeEEEEEcCCce--eEEEec---------cCCCCEEEEEEccCCCEEEEEe--CCCeEEE
Q 001310          864 DDSTILIYNARSSE--VISKLE---------GHSKRVTGLVFSDALNILVSSG--GDAQIFV  912 (1103)
Q Consensus       864 ~dg~v~iwd~~~~~--~~~~l~---------~h~~~V~~l~~s~dg~~l~s~s--~dg~I~i  912 (1103)
                      .|+.|++||+....  +. .+.         .+...|.+++|++++-.|...+  ..|.|+-
T Consensus       147 sD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          147 EDDTITMFDILNSQEKPI-VLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             TTSCEEEEETTCTTSCCE-EESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEE
T ss_pred             cCCEEEEEEcccCCCCCc-chhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEE
Confidence            99999999998631  22 222         2336789999999886666644  7777654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=96.05  E-value=0.36  Score=51.07  Aligned_cols=187  Identities=11%  Similarity=0.007  Sum_probs=101.3

Q ss_pred             CCCEEEEEcC----------CeEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC-----CeEEEEEcCC
Q 001310          813 NDAYLFSASG----------GVISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-----STILIYNARS  875 (1103)
Q Consensus       813 d~~~l~~~~d----------g~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-----g~v~iwd~~~  875 (1103)
                      ++++++.|+.          ..+.+||..+.+-..  .+.........+.+   ++++++.|+.+     ..+.+||..+
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~~yd~~~  146 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER  146 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE---CCEEEEEcCCCCCcccccEEEECCCC
Confidence            6666666542          358889987654322  22222222223333   56777777644     3688999887


Q ss_pred             ceeEE--EeccCCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310          876 SEVIS--KLEGHSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       876 ~~~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg  948 (1103)
                      .+-..  .+......-.++.+  ++++++.|+.+     ..+.+||+.+.+-.....+.....      ....+.+  ++
T Consensus       147 ~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~------~~~~~~~--~~  216 (308)
T 1zgk_A          147 DEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRS------GAGVCVL--HN  216 (308)
T ss_dssp             TEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCB------SCEEEEE--TT
T ss_pred             CeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccc------cceEEEE--CC
Confidence            65322  22211111222223  67788887765     458899998866443222221111      1222233  66


Q ss_pred             CEEEEE-eC-----CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC-----CcEEEEeCCCceeE
Q 001310          949 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD-----GTLSIHEASNLEVQ 1013 (1103)
Q Consensus       949 ~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d-----g~v~vWd~~~~~~~ 1013 (1103)
                      ++++.| .+     ..+.+||..+.+-...........-.+++ .-+++.++.|+.+     ..+.+||+.+.+..
T Consensus       217 ~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~  291 (308)
T 1zgk_A          217 CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGIT-VHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  291 (308)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEE-EECCEEEEEcCcCCCcccceEEEEcCCCCEEe
Confidence            666664 32     46999999887654321111111111222 2367788888754     45889999887665

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=95.98  E-value=0.082  Score=51.12  Aligned_cols=148  Identities=13%  Similarity=0.006  Sum_probs=83.6

Q ss_pred             CCeeEEEEecCCCEEEEEcCCeEEEEEcCCcee------eEEecC-CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC
Q 001310          803 EAVPCFALSKNDAYLFSASGGVISLYIVMTFKT------ILTIMP-PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARS  875 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~------~~~~~~-~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~  875 (1103)
                      ..+..++|+|+|.+.++ .+|.+.-.+..+...      -..+-. .-..-.++.|.| ++.+.++  .||.|+-++-.+
T Consensus        41 ~~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           41 SNFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TTCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCC
T ss_pred             ccceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCc
Confidence            36679999999998888 778765555433111      111100 011247899999 8877776  569888887643


Q ss_pred             cee-------EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeee--eeeecCCCcccCCCCceEEEEcC
Q 001310          876 SEV-------ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC--RSLQTPDGVMTLAPSETHIQFHK  946 (1103)
Q Consensus       876 ~~~-------~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~--~~~~~~~~~~~~~~~v~~l~fs~  946 (1103)
                      ...       ...-.+-=..+..|.|.|+|.+.+..  |+.++-+....+.....  ..-..-.+...   ..+.+.|.+
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~---~yr~l~f~~  191 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWD---TFKFLFFSS  191 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGG---GEEEEEECT
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcc---eEEEEEECC
Confidence            211       11111111467999999999988876  77654332221110000  00000001111   245677999


Q ss_pred             CCCEEEEEeCCeEE
Q 001310          947 DQTRFLLVHETHLA  960 (1103)
Q Consensus       947 dg~~l~~~~d~~v~  960 (1103)
                      +|.+.++. ++.++
T Consensus       192 ~G~l~~v~-~g~~Y  204 (236)
T 1tl2_A          192 VGTLFGVQ-GGKFY  204 (236)
T ss_dssp             TSCEEEEE-TTEEE
T ss_pred             CCcEEEEe-CCeEE
Confidence            99988887 66443

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.96  E-value=2.1  Score=45.41  Aligned_cols=121  Identities=17%  Similarity=0.172  Sum_probs=69.5

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      .+.++...-...+.|+|.|||+ ++++--..|.|++++..+++......+            . .+..........|+|+
T Consensus        23 ~~~~va~gL~~P~~ia~~pdG~-llVter~~G~I~~v~~~~g~~~~v~~~------------~-~v~~~g~~GllGia~~   88 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPGGD-LLVSSRDEATITRVDAKTGRKTELGEV------------P-GVSPSGEGGLLGIALS   88 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEEEEC------------T-TCCCBTTBSEEEEEEC
T ss_pred             eeEEeecCCCCceEEEEcCCCc-EEEEEecCCEEEEEECCCCcEeeeccc------------C-ceeecCCCCceeeEec
Confidence            4445555455889999999998 677665589999998766653211000            0 0122345678899999


Q ss_pred             CC---CCEEEEE-e--CCCeEEEEEecCCC----cc---ccc-eEec-cccccEEEEEEecCCCceEEEEEc
Q 001310          406 PD---GSLLGVA-Y--SKHIVQLYAYHGGS----DA---RQQ-LEID-AHVGNVNDLAFSAPCKQISVITCG  462 (1103)
Q Consensus       406 pd---g~~las~-~--~d~~i~iwd~~~~~----~~---~~~-~~l~-~h~~~v~~~~~s~d~~~~~l~s~~  462 (1103)
                      ||   +.+|... +  .++.|.-|.+..+.    .+   +.+ ..+. +....-..|+|.|||.  +.++.+
T Consensus        89 Pdf~~~g~lYv~yt~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~--Lyvt~G  158 (347)
T 3das_A           89 PDYASDHMVYAYFTSASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKM--LYAGTG  158 (347)
T ss_dssp             TTHHHHCEEEEEEECSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSC--EEEECB
T ss_pred             cccccCCEEEEEEecCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCC--EEEEEC
Confidence            96   4444433 2  34556667665521    11   111 0111 1111345799999997  555543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.79  E-value=0.85  Score=48.38  Aligned_cols=227  Identities=11%  Similarity=0.023  Sum_probs=108.2

Q ss_pred             eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC----CC-------ceEEEeCCCCceeEE--eecCC
Q 001310          419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD----DK-------TIKVWDAVTGSRTYS--FEGHG  485 (1103)
Q Consensus       419 ~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~----d~-------~i~iwd~~~~~~~~~--~~~~~  485 (1103)
                      .+..||..+++-..  ..+..........+...++.  +++.|+.    ++       .+.++|..+++-...  +....
T Consensus        25 ~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r  100 (318)
T 2woz_A           25 AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSAR  100 (318)
T ss_dssp             EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCB
T ss_pred             ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccc
Confidence            37888888765222  12221111122223344555  5666662    11       167788776653221  11111


Q ss_pred             CceEEEEeeecCCccEEEEEECC-------CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCC--Ccee
Q 001310          486 APVYSLCPHAKENIHFIFSISVD-------GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKE--GESF  556 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~d-------g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~--~~~~  556 (1103)
                      ..- +++.  . ++.+++.|+.+       ..+.+||..+.+-...-..........+...+++.++.++....  ....
T Consensus       101 ~~~-~~~~--~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~  176 (318)
T 2woz_A          101 CLF-GLGE--V-DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR  176 (318)
T ss_dssp             CSC-EEEE--E-TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred             ccc-ceEE--E-CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence            111 1221  1 45667777654       24677777665433322211111111122256666666654221  1345


Q ss_pred             EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-----CcEEEEECCCCeeEEEEcCCCCCCCCceEEEe
Q 001310          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-----HVIKIWDMNKVQLLTTIDAGGGLPENPRICFN  631 (1103)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s  631 (1103)
                      +.+||+.+.+-...-.... .......+.+  ++..++.|+.+     ..+.+||+.+.+-...-.....  .....+..
T Consensus       177 ~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~~~~~~~  251 (318)
T 2woz_A          177 VFIYNPKKGDWKDLAPMKT-PRSMFGVAIH--KGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE--RSSISLVS  251 (318)
T ss_dssp             EEEEETTTTEEEEECCCSS-CCBSCEEEEE--TTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC--CBSCEEEE
T ss_pred             EEEEcCCCCEEEECCCCCC-CcccceEEEE--CCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc--ccceEEEE
Confidence            8999998876543322111 1122222332  45666666643     3577899887765443222211  11222233


Q ss_pred             cCCCEEEEEECC--------------CeEEEEEcCCCCeeE
Q 001310          632 KNGTLLAVIANE--------------NRIKILETPESNSVD  658 (1103)
Q Consensus       632 ~~g~~l~~~~~d--------------g~i~iw~~~~~~~~~  658 (1103)
                      -++++++.|+.+              ..+.+||..+.+...
T Consensus       252 ~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~  292 (318)
T 2woz_A          252 LAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG  292 (318)
T ss_dssp             ETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred             ECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence            356777777643              357778887765443

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=95.79  E-value=0.82  Score=49.47  Aligned_cols=142  Identities=8%  Similarity=0.015  Sum_probs=68.2

Q ss_pred             CeEEEEEcCCcee--EEEeccCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEc--CCCceeeeeeeecCCCcccC
Q 001310          866 STILIYNARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDV--DGWGIQTCRSLQTPDGVMTL  935 (1103)
Q Consensus       866 g~v~iwd~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~--~~~~~~~~~~~~~~~~~~~~  935 (1103)
                      ..+.+||..+.+-  +..+......-.+++. -++++++.|+.+      ..+.++|+  .+.+-.....+..+..    
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~----  242 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDG----  242 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTC----
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcc----
Confidence            4789999987643  3333211111012222 266777777642      34777877  4433222111111111    


Q ss_pred             CCCceEEEEcCCCCEEEEE-eC----------------------CeEEEEECCCceEE--EEeeCCCCcCeEEEEEccCC
Q 001310          936 APSETHIQFHKDQTRFLLV-HE----------------------THLAIYEAEELTCL--KQWFPISSVPISQATFSCDC  990 (1103)
Q Consensus       936 ~~~v~~l~fs~dg~~l~~~-~d----------------------~~v~iwd~~~~~~~--~~~~~~h~~~v~~l~fs~dg  990 (1103)
                        ...+.+...++++++.| .+                      ..+.+||..+.+-.  ..+..+ ...  ..+...++
T Consensus       243 --~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~--~~~~~~~~  317 (357)
T 2uvk_A          243 --VAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-RAY--GVSLPWNN  317 (357)
T ss_dssp             --CBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-CBS--SEEEEETT
T ss_pred             --cccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-ccc--ceeEEeCC
Confidence              11222334466766664 21                      25789998866433  221111 111  22344678


Q ss_pred             CEEEEEecCC------cEEEEeCCCceeEEeec
Q 001310          991 RMVFTSFVDG------TLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       991 ~~l~t~~~dg------~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ++++.|+.++      .|.++++++++.+....
T Consensus       318 ~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          318 SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence            8888888653      36666888887764443

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=95.71  E-value=3.5  Score=45.93  Aligned_cols=310  Identities=13%  Similarity=0.101  Sum_probs=164.0

Q ss_pred             EEEEeCCCcEEEEECCCCeeEEEEcCCCC-------------------------CCCCceEEEec---CCCEEEEEEC-C
Q 001310          593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGG-------------------------LPENPRICFNK---NGTLLAVIAN-E  643 (1103)
Q Consensus       593 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------------------------~~~v~~v~~s~---~g~~l~~~~~-d  643 (1103)
                      +.+|+..|.|+|+-+.+++.+..+.....                         ...-..+++..   ||++|.+-.. +
T Consensus        73 f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdkan  152 (638)
T 3sbq_A           73 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKAN  152 (638)
T ss_dssp             EEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETTT
T ss_pred             EeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCCC
Confidence            56788999999999999999988754321                         01123455542   6788887764 5


Q ss_pred             CeEEEEEcCCCCeeEecccc-ccceeeeEEe--cCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCC
Q 001310          644 NRIKILETPESNSVDAAGVL-SDNLRKLSVN--PISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARP  720 (1103)
Q Consensus       644 g~i~iw~~~~~~~~~~~~~~-~~~i~~~~~~--~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~  720 (1103)
                      ..|-..++...++-+.+..+ ...+-.+.+.  |....+.. .....+-+.    .||..+-.-..+.. .+|..-....
T Consensus       153 ~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~-~~e~~~P~p----ndg~~~~~~~~~~y-~~f~~iD~~t  226 (638)
T 3sbq_A          153 SRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFA-NAEFIIPHP----NDGKVFDLQDENSY-TMYNAIDAET  226 (638)
T ss_dssp             TEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEE-EECSCEESS----CSSSCCCTTSTTEE-EEEEEEETTT
T ss_pred             cceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEe-cceeeccCC----CCCcccccCChhhc-eEEEEEcCCc
Confidence            66777777766554433322 2233344443  22221111 111111110    11111100000000 1111000000


Q ss_pred             cc-ceeeeccCccccccEEEEEEecCCcEEEEeecCc---------------eEEEeecCCCcc-cccccccccc--CCe
Q 001310          721 SE-CQSLLLPSKVKANKISRLTYNNGGQAIFALASNG---------------VHLMWRWPRNDL-TLSTEATTKV--PPR  781 (1103)
Q Consensus       721 ~~-~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg---------------~i~vw~~~~~~~-~~~~~~~~~~--~~~  781 (1103)
                      -. ...+..     .+........++|.+.++.+.+.               .+.++++..-.. ...|+...-.  .+.
T Consensus       227 m~v~~Qv~v-----~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~gv~  301 (638)
T 3sbq_A          227 MEMAFQVIV-----DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSKTP  301 (638)
T ss_dssp             CSEEEEEEE-----SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred             cEEEEEEEc-----CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCCee
Confidence            00 000000     11223345577788777766432               244555543221 2233333333  467


Q ss_pred             eecCCC----CCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCcee-------------eEEecCC
Q 001310          782 LYQPRH----GPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKT-------------ILTIMPP  842 (1103)
Q Consensus       782 ~~~~~~----~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~-------------~~~~~~~  842 (1103)
                      +.|...    +..+ +..++   -......+.++|||+++++++  +.++.++|+.....             ..+.. -
T Consensus       302 ViD~~~~~~~~~~~-~~~iP---~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~  376 (638)
T 3sbq_A          302 VLDGRKKDGKDSKF-TRYVP---VPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-L  376 (638)
T ss_dssp             EEECSCBTTBCCSS-EEEEE---ESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-C
T ss_pred             EEccccccccCCce-EEEEe---CCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-C
Confidence            777665    2211 11111   234455688999999999998  68899999874211             11222 2


Q ss_pred             CCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc----------eeEEEeccCCCCEEEEEE------ccCCCEEEEEe-
Q 001310          843 SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS----------EVISKLEGHSKRVTGLVF------SDALNILVSSG-  905 (1103)
Q Consensus       843 ~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~----------~~~~~l~~h~~~V~~l~~------s~dg~~l~s~s-  905 (1103)
                      .-.....+|.+ +|....+-.-|..|.-|++...          ..+..+.-|-. +-.+.-      .|||++|++.. 
T Consensus       377 GlGPlHt~Fd~-~G~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~dv~Yq-pGH~~~~~get~~~dGk~lv~lnK  454 (638)
T 3sbq_A          377 GLGPLHTTFDG-RGNAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLDVHYQ-PGHLHASLCETNEADGKWLVALSK  454 (638)
T ss_dssp             CSCEEEEEECS-SSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSC-EEEEEETTTTSTTCCSCEEEEEES
T ss_pred             CCcccEEEECC-CCceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccccccC-CcccccCCCccCCCCccEEEEecc
Confidence            34668899999 7866666778999999999763          35566665543 333333      57999999974 


Q ss_pred             --CCCe----------EEEEEcCCCce
Q 001310          906 --GDAQ----------IFVWDVDGWGI  920 (1103)
Q Consensus       906 --~dg~----------I~iwd~~~~~~  920 (1103)
                        .|+.          -.+.|+...+.
T Consensus       455 ~skdrfl~vGpl~pen~QlidIsGdkM  481 (638)
T 3sbq_A          455 FSKDRFLPVGPLHPENDQLIDISGDEM  481 (638)
T ss_dssp             CCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred             cccccCcCCCCCCCCcceeEecCCCce
Confidence              4543          36777776553

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=95.60  E-value=0.36  Score=60.10  Aligned_cols=236  Identities=11%  Similarity=0.090  Sum_probs=133.3

Q ss_pred             ecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEE
Q 001310          342 FHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQ  421 (1103)
Q Consensus       342 ~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~  421 (1103)
                      .+|..+ ++|.=. ..++.|+|+++.+.+..+.+                    ..+|..-.|-.+.. |+-.+ +..|.
T Consensus        73 MnP~~~-iiALra-g~~lQiFnl~~k~klks~~~--------------------~e~VvfWkWis~~~-l~lVT-~~aVy  128 (1630)
T 1xi4_A           73 MNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLNT-VALVT-DNAVY  128 (1630)
T ss_pred             cCCCcc-eEEEec-CCeEEEeehHHhhhhccccc--------------------CCCceEEEecCCCe-eEEEc-CCeEE
Confidence            466666 565543 57899999999887765332                    34677777875444 44433 45699


Q ss_pred             EEEecCCCccccceEeccc----cccEEEEEEecCCCceEEEEEc-----CCCceEEEeCCCCceeEEeecCCCceEEEE
Q 001310          422 LYAYHGGSDARQQLEIDAH----VGNVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1103)
Q Consensus       422 iwd~~~~~~~~~~~~l~~h----~~~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  492 (1103)
                      -|++.+....  ...+..|    ...|..-.-+++.+++.++.-+     -.|.+.+|..+.+. .+.+.||.+....+.
T Consensus       129 HW~~~~~s~P--~k~fdR~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~  205 (1630)
T 1xi4_A          129 HWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFK  205 (1630)
T ss_pred             EeccCCCCcc--HHHHhcchhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheec
Confidence            9999753321  1123333    3457777788898863332222     34788889865443 455667766555554


Q ss_pred             eeecCCcc-EEEEEEC---CCeEEEEEcCCC---CeeE-----Ee--cC--CCccEEEEEEccCCCEEEEEecCCCCcee
Q 001310          493 PHAKENIH-FIFSISV---DGKIKAWLYDSL---GARV-----DY--DA--PGLGCTRMAYSANGRRLFSCGTSKEGESF  556 (1103)
Q Consensus       493 ~~~~~~~~-~l~s~~~---dg~i~iwd~~~~---~~~~-----~~--~~--~~~~i~~~~~s~dg~~l~~~~~~~~~~~~  556 (1103)
                      +...+... +++.+..   .+.++|-++...   ....     .+  ..  ...-..++..|+.-..+...+.    .|.
T Consensus       206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G~  281 (1630)
T 1xi4_A          206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGY  281 (1630)
T ss_pred             cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----Cce
Confidence            43222222 2222222   268888888653   1111     11  11  1122345667776666666654    678


Q ss_pred             EEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCe
Q 001310          557 LVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       557 i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~  611 (1103)
                      |+++|+.||..+..-+-..   ..|...+-.....-+++....|.|.--.+....
T Consensus       282 ~~~~d~~t~~~i~~~ris~---~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~  333 (1630)
T 1xi4_A          282 IHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN  333 (1630)
T ss_pred             EEEEecccchhhhhccccC---CceEEeccCCCCCceEEEcCCceEEEEEEccch
Confidence            9999999998765544322   445444444443445555555655555544433

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.48  E-value=1.3  Score=46.84  Aligned_cols=193  Identities=7%  Similarity=-0.017  Sum_probs=100.9

Q ss_pred             EEecCCCEEEEEcC-----C-------eEEEEEcCCceeeE--EecCCCCCeeEEEEcCCCCCEEEEEeCC-------Ce
Q 001310          809 ALSKNDAYLFSASG-----G-------VISLYIVMTFKTIL--TIMPPSPTATSLAFNPHDNNVIAIGMDD-------ST  867 (1103)
Q Consensus       809 ~~s~d~~~l~~~~d-----g-------~i~iwd~~~~~~~~--~~~~~~~~i~~l~~s~~d~~~lasg~~d-------g~  867 (1103)
                      +...+++.++.|+.     +       .+.+||..+.+-..  .+.........+.+   ++++++.|+.+       ..
T Consensus        52 ~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~~iyv~GG~~~~~~~~~~~  128 (318)
T 2woz_A           52 IVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV---DDKIYVVAGKDLQTEASLDS  128 (318)
T ss_dssp             EECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE---TTEEEEEEEEBTTTCCEEEE
T ss_pred             EEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE---CCEEEEEcCccCCCCcccce
Confidence            34567777777761     1       16778877654322  22211112222223   56777777754       36


Q ss_pred             EEEEEcCCceeEE--EeccCCCCEEEEEEccCCCEEEEEeCC------CeEEEEEcCCCceeeeeeeecCCCcccCCCCc
Q 001310          868 ILIYNARSSEVIS--KLEGHSKRVTGLVFSDALNILVSSGGD------AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSE  939 (1103)
Q Consensus       868 v~iwd~~~~~~~~--~l~~h~~~V~~l~~s~dg~~l~s~s~d------g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v  939 (1103)
                      +.+||..+.+-..  .+......-.++.  .++++++.|+.+      ..+.++|+.+.+-.....+.....       -
T Consensus       129 ~~~yd~~~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~-------~  199 (318)
T 2woz_A          129 VLCYDPVAAKWSEVKNLPIKVYGHNVIS--HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRS-------M  199 (318)
T ss_dssp             EEEEETTTTEEEEECCCSSCEESCEEEE--ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCB-------S
T ss_pred             EEEEeCCCCCEeECCCCCCcccccEEEE--ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcc-------c
Confidence            8889988765322  2221111111122  467787877642      358999998876444322221111       1


Q ss_pred             eEEEEcCCCCEEEEE-eC-----CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC--------------
Q 001310          940 THIQFHKDQTRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD--------------  999 (1103)
Q Consensus       940 ~~l~fs~dg~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d--------------  999 (1103)
                      .+++. -++++++.| .+     ..+.+||..+.+-...-.... ......+...++++++.|+.+              
T Consensus       200 ~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~  277 (318)
T 2woz_A          200 FGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQ-ERSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEV  277 (318)
T ss_dssp             CEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSS-CCBSCEEEEETTEEEEECCBCCBC----CCBCCBC
T ss_pred             ceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCC-cccceEEEEECCEEEEECCeeccCCCCceecccee
Confidence            12222 356666664 22     358899998776443211111 111112223467777777754              


Q ss_pred             CcEEEEeCCCceeEEe
Q 001310         1000 GTLSIHEASNLEVQCR 1015 (1103)
Q Consensus      1000 g~v~vWd~~~~~~~~~ 1015 (1103)
                      ..+.+||+.+.+....
T Consensus       278 ~~v~~yd~~~~~W~~~  293 (318)
T 2woz_A          278 NDIWKYEDDKKEWAGM  293 (318)
T ss_dssp             CCEEEEETTTTEEEEE
T ss_pred             eeEEEEeCCCCEehhh
Confidence            3588899998876644

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.41  E-value=2.2  Score=47.62  Aligned_cols=113  Identities=11%  Similarity=0.065  Sum_probs=64.4

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC---CCEEEEE--e-----
Q 001310          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV--H-----  955 (1103)
Q Consensus       886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d---g~~l~~~--~-----  955 (1103)
                      -.....|+|.|||+++++-...+.|++++..++.......+...............|+|+||   +.+|.++  .     
T Consensus        26 l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            34567999999999887654445788887765553321111111000001235779999996   5555553  2     


Q ss_pred             -------CCeEEEEECCCc-------eEEEE-eeCCCCcCeEEEEEccCCCEEEEEec
Q 001310          956 -------ETHLAIYEAEEL-------TCLKQ-WFPISSVPISQATFSCDCRMVFTSFV  998 (1103)
Q Consensus       956 -------d~~v~iwd~~~~-------~~~~~-~~~~h~~~v~~l~fs~dg~~l~t~~~  998 (1103)
                             ...|.-|+...+       +.+.. +..........|+|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                   235666665322       11221 11111234788999999987776654

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.32  E-value=1  Score=50.32  Aligned_cols=161  Identities=12%  Similarity=0.103  Sum_probs=90.6

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee--EEEecc------CCCCEEEEEEccC----CCEEEEEeC-----
Q 001310          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEG------HSKRVTGLVFSDA----LNILVSSGG-----  906 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~--~~~l~~------h~~~V~~l~~s~d----g~~l~s~s~-----  906 (1103)
                      ...+.++|.| +++++++-...+.|++++..+++.  +..+..      ..+....|+|+||    +.+.++-+.     
T Consensus        27 ~~P~~~a~~p-dG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~  105 (454)
T 1cru_A           27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (454)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCceEEEEcC-CCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCC
Confidence            4567999999 888777654445788887665543  223321      2456779999994    444444432     


Q ss_pred             -------CCeEEEEEcCCC--ceeeee-eee-cCCCcccCCCCceEEEEcCCCCEEEEEeC-------------------
Q 001310          907 -------DAQIFVWDVDGW--GIQTCR-SLQ-TPDGVMTLAPSETHIQFHKDQTRFLLVHE-------------------  956 (1103)
Q Consensus       907 -------dg~I~iwd~~~~--~~~~~~-~~~-~~~~~~~~~~~v~~l~fs~dg~~l~~~~d-------------------  956 (1103)
                             ...|.-++++.+  ...... .+. ...+..   -....|+|.|||.+.++..|                   
T Consensus       106 ~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~---H~~~~l~f~pDG~Lyv~~Gd~~~~~~~~~~~~~~~~~~p  182 (454)
T 1cru_A          106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKD---HQSGRLVIGPDQKIYYTIGDQGRNQLAYLFLPNQAQHTP  182 (454)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSS---CCEEEEEECTTSCEEEEECCTTTTSGGGTTSCCCTTCCC
T ss_pred             CccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCC---CCCCeEeECCCCeEEEEECCCCCCCcccccccccccccc
Confidence                   235666665432  221111 222 121111   14689999999998777322                   


Q ss_pred             --------------CeEEEEECCCce-----------EEEEeeCCCCcCeEEEEEccCCCEEEEE-ecCCcEEEEeCCCc
Q 001310          957 --------------THLAIYEAEELT-----------CLKQWFPISSVPISQATFSCDCRMVFTS-FVDGTLSIHEASNL 1010 (1103)
Q Consensus       957 --------------~~v~iwd~~~~~-----------~~~~~~~~h~~~v~~l~fs~dg~~l~t~-~~dg~v~vWd~~~~ 1010 (1103)
                                    +.|.-++.+ |.           ....+..+| .....++|.++|++.++- +.++.-.|.-+..|
T Consensus       183 ~~~~~~aq~~~~~~G~IlRi~~d-G~ip~~Npf~~~~~~ei~a~G~-RNp~gla~dp~G~L~~~d~g~~~~dein~i~~G  260 (454)
T 1cru_A          183 TQQELNGKDYHTYMGKVLRLNLD-GSIPKDNPSFNGVVSHIYTLGH-RNPQGLAFTPNGKLLQSEQGPNSDDEINLIVKG  260 (454)
T ss_dssp             CHHHHHTTCCTTCSSEEEEECTT-SCCCTTCCEETTEECSEEEBCC-SEEEEEEECTTSCEEEEEECSSSCEEEEECCTT
T ss_pred             ccccccccCCCCCCeeEEEEeCC-CCCCCCCCCCCCCcceEEEECC-CCcceEEECCCCCEEEEecCCCCCeEEEEecCC
Confidence                          234444433 33           223344455 457789999988765543 34444455555443

>2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1

Probab=95.14  E-value=0.022  Score=51.02  Aligned_cols=78  Identities=13%  Similarity=0.227  Sum_probs=58.5

Q ss_pred             hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHHHHHHH
Q 001310           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSARKNMM  145 (1103)
Q Consensus        72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~r~~l~  145 (1103)
                      ++|+|+-+.||||+.+|..++|..++.+.-..+... .+.+++|+.+.....+.+.+....+...      .+.+-..|+
T Consensus        33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~  111 (138)
T 2j4b_A           33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI  111 (138)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence            899999999999999999999999999977777766 8888999988888777665543333222      244556666


Q ss_pred             HHHHH
Q 001310          146 LELKQ  150 (1103)
Q Consensus       146 ~~l~~  150 (1103)
                      .-|++
T Consensus       112 ~fL~~  116 (138)
T 2j4b_A          112 NFLEE  116 (138)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            66664

>2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1

Probab=94.66  E-value=0.037  Score=50.94  Aligned_cols=79  Identities=10%  Similarity=0.178  Sum_probs=59.1

Q ss_pred             hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHHHHHHH
Q 001310           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSARKNMM  145 (1103)
Q Consensus        72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~r~~l~  145 (1103)
                      ++|+|+-+.||||+.+|..++|..+|++.-..+.....+.+++|+.+.....+.+.+....+...      ...+-..|+
T Consensus        52 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL~  131 (156)
T 2nxp_A           52 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK  131 (156)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHHH
Confidence            89999999999999999999999999997666665667888899988888777665544443221      144455555


Q ss_pred             HHHHH
Q 001310          146 LELKQ  150 (1103)
Q Consensus       146 ~~l~~  150 (1103)
                      .-|++
T Consensus       132 ~fL~~  136 (156)
T 2nxp_A          132 RHLQE  136 (156)
T ss_dssp             HHHTT
T ss_pred             HHHHH
Confidence            55553

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=94.10  E-value=6.5  Score=40.94  Aligned_cols=182  Identities=10%  Similarity=0.049  Sum_probs=99.9

Q ss_pred             EEEecCCCceEEEEEcCC-------------CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEEC
Q 001310          339 SMDFHPVQHTLLLVGTNV-------------GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWS  405 (1103)
Q Consensus       339 ~v~~spdg~~llasgs~d-------------~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s  405 (1103)
                      +--++++|+++..+...+             ..|+..++..++...                    +..  ..  +.+|+
T Consensus        57 ~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~--------------------l~~--~~--~~~~s  112 (302)
T 3s25_A           57 AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV--------------------LDP--DP--CIYAS  112 (302)
T ss_dssp             EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE--------------------EEC--SC--EEEEE
T ss_pred             eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE--------------------eec--CC--ccEEE
Confidence            345688998766665543             356666666554322                    111  11  23678


Q ss_pred             CCCCEEEEEe--CCC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe
Q 001310          406 PDGSLLGVAY--SKH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF  481 (1103)
Q Consensus       406 pdg~~las~~--~d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~  481 (1103)
                      +++++|+...  .++  .|..-++.+.. ..   .+..+..    .+|+++++. +..+......|.+-++..+.....+
T Consensus       113 ~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~-~~---~lt~~~~----~~~~~~g~~-iy~t~~g~~~Iy~~~l~g~~~~~l~  183 (302)
T 3s25_A          113 LIGNYIYYLHYDTQTATSLYRIRIDGEE-KK---KIKNHYL----FTCNTSDRY-FYYNNPKNGQLYRYDTASQSEALFY  183 (302)
T ss_dssp             EETTEEEEEEESSSSCEEEEEEETTSCC-CE---EEESSCC----CCSEEETTE-EEEECTTTCCEEEEETTTTEEEEEE
T ss_pred             EeCCEEEEEeecCCCCceEEEEECCCCC-eE---EEeCCCc----eEeeEECCE-EEEEeCCCceEEEEECCCCCEEEEe
Confidence            8999999876  333  45555555432 22   3333432    467889985 2334334678888887766654433


Q ss_pred             ecCCCceEEEEeeecCCccEEEEEECC--CeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEE
Q 001310          482 EGHGAPVYSLCPHAKENIHFIFSISVD--GKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE  559 (1103)
Q Consensus       482 ~~~~~~v~~~~~~~~~~~~~l~s~~~d--g~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~i  559 (1103)
                      .+   ... ..++|  ++.+|+-....  ..|..-+++..... .+..  ..+  ..|+|++++|+.+....  ...|..
T Consensus       184 ~~---~~~-~~~~P--~g~~iy~t~~~~~~~I~~~~ldG~~~~-~Lt~--~~~--~~~~~~g~~Iy~~~~~~--~~~i~~  250 (302)
T 3s25_A          184 DC---NCY-KPVVL--DDTNVYYMDVNRDNAIVHVNINNPNPV-VLTE--ANI--EHYNVYGSLIFYQRGGD--NPALCV  250 (302)
T ss_dssp             CS---CEE-EEEEE--ETTEEEEEEGGGTTEEEEECSSSCCCE-ECSC--SCE--EEEEEETTEEEEEECSS--SCEEEE
T ss_pred             CC---Ccc-ceeee--cCCEEEEEEcCCCcEEEEEECCCCCeE-EEeC--CCc--ceEEECCCEEEEEECCC--CcEEEE
Confidence            32   222 23433  44566655443  24555555554432 2222  223  34888999998764322  356777


Q ss_pred             EeCCCCe
Q 001310          560 WNESEGA  566 (1103)
Q Consensus       560 wd~~~~~  566 (1103)
                      -++....
T Consensus       251 ~~~DG~~  257 (302)
T 3s25_A          251 VKNDGTG  257 (302)
T ss_dssp             EETTSCC
T ss_pred             EECCCCc
Confidence            7765443

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=93.96  E-value=0.12  Score=54.63  Aligned_cols=194  Identities=10%  Similarity=0.036  Sum_probs=104.1

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecC-CCceEEEEeeec-CCccEEEEE-ECCCeEEEEEcCCCCeeEEecCC----C
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGH-GAPVYSLCPHAK-ENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAP----G  529 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~----~  529 (1103)
                      .++.++.||.|.-.|..+|+.+.+++.. ..++....-... .++..++.. +.||.+..++..++.....+...    .
T Consensus        12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~   91 (339)
T 2be1_A           12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST   91 (339)
T ss_dssp             EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred             EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence            5888999999999999999999888654 123322211111 122333333 68999999998776544433211    1


Q ss_pred             ccEEE---EEE-c----cCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCc-----eEEEEEc-----CCCC
Q 001310          530 LGCTR---MAY-S----ANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS-----VSVVHFD-----TAKD  591 (1103)
Q Consensus       530 ~~i~~---~~~-s----~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~-----v~~~~~~-----~~~~  591 (1103)
                      .++..   ..+ .    ..+..+++++.    ++.++..|..+|+.+..+...... ..     ..|....     ..+.
T Consensus        92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~-~~~~~~~e~~~~~~d~~~d~~~~  166 (339)
T 2be1_A           92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKN-GYFGSQSVDCSPEEKIKLQECEN  166 (339)
T ss_dssp             CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBC-C--------------------CC
T ss_pred             cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCc-ccccccccccccccccccccCCC
Confidence            11211   000 0    13455666654    777999999999999888753210 10     0011110     1235


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEE-----cCCCCCCCC-ceEEEecCCCEEEEEECCCeEEEEEcCCCCeeE
Q 001310          592 QILAAGDDHVIKIWDMNKVQLLTTI-----DAGGGLPEN-PRICFNKNGTLLAVIANENRIKILETPESNSVD  658 (1103)
Q Consensus       592 ~l~~~~~dg~i~iwd~~~~~~~~~~-----~~~~~~~~v-~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~  658 (1103)
                      .++.+..+..+.+.+ .+|+ +..+     ........+ ..-..+.|+.+ ++++.||.|.-+|..++..+.
T Consensus       167 ~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          167 MIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             EEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             eEEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            677777666666665 3343 1111     100000000 00011234655 557888999999988887665

>1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1

Probab=93.92  E-value=0.044  Score=43.45  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=43.1

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhc
Q 001310            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLS   58 (1103)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~   58 (1103)
                      ++|+-+=|++||...||.+++.+|.+|.+++.+  ...=...+|+=+|..++.+=.
T Consensus        10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQK   65 (88)
T 1uuj_A           10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK   65 (88)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHHH
Confidence            578999999999999999999999999998764  222346677778877766633

>2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1

Probab=93.77  E-value=0.022  Score=51.59  Aligned_cols=82  Identities=16%  Similarity=0.203  Sum_probs=55.7

Q ss_pred             ccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHH
Q 001310           67 RYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSA  140 (1103)
Q Consensus        67 ~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~  140 (1103)
                      .+.. ++|+|+-++||||+.+| .++|..++.+.-..+.....+.+++|+.+.....+.+.+....+...      ...+
T Consensus        31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s  108 (148)
T 2j49_A           31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT  108 (148)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence            3344 89999999999999999 99999999986655543345666777777666666555543333222      2445


Q ss_pred             HHHHHHHHHH
Q 001310          141 RKNMMLELKQ  150 (1103)
Q Consensus       141 r~~l~~~l~~  150 (1103)
                      -..|+.-|++
T Consensus       109 ~~lL~~fL~~  118 (148)
T 2j49_A          109 LNLLLYFLNE  118 (148)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5566666663

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=93.65  E-value=7.8  Score=40.31  Aligned_cols=180  Identities=8%  Similarity=0.092  Sum_probs=101.5

Q ss_pred             EEECCCCCEEEEEeCC--------------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEE--cCCC
Q 001310          402 VVWSPDGSLLGVAYSK--------------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC--GDDK  465 (1103)
Q Consensus       402 ~~~spdg~~las~~~d--------------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~--~~d~  465 (1103)
                      --|+++|.+|+.+...              ..|+..++.+++..    .+....    +..|+++++.+++...  ....
T Consensus        58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~----~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~  129 (302)
T 3s25_A           58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGST----VLDPDP----CIYASLIGNYIYYLHYDTQTAT  129 (302)
T ss_dssp             EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCE----EEECSC----EEEEEEETTEEEEEEESSSSCE
T ss_pred             eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcce----EeecCC----ccEEEEeCCEEEEEeecCCCCc
Confidence            3457889999887543              35777777766422    222211    2367889985333331  2344


Q ss_pred             ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEEC-CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEE
Q 001310          466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       466 ~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l  544 (1103)
                      .|..-++.. .....+..+..    ..+.+  ++..|+-.+. ...|.+-+++..........   ... ..+.|++.+|
T Consensus       130 ~Iy~~~~dG-s~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~i  198 (302)
T 3s25_A          130 SLYRIRIDG-EEKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNV  198 (302)
T ss_dssp             EEEEEETTS-CCCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEE
T ss_pred             eEEEEECCC-CCeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEE
Confidence            566666653 33444544433    23433  4455655544 56788888776654444332   222 3466999999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC--CCcEEEEECCCC
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD--DHVIKIWDMNKV  610 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~  610 (1103)
                      +......  ...|..-++..+.. ..+..     ..+  ..|+|++.+|+.+..  .+.|..-++...
T Consensus       199 y~t~~~~--~~~I~~~~ldG~~~-~~Lt~-----~~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~  256 (302)
T 3s25_A          199 YYMDVNR--DNAIVHVNINNPNP-VVLTE-----ANI--EHYNVYGSLIFYQRGGDNPALCVVKNDGT  256 (302)
T ss_dssp             EEEEGGG--TTEEEEECSSSCCC-EECSC-----SCE--EEEEEETTEEEEEECSSSCEEEEEETTSC
T ss_pred             EEEEcCC--CcEEEEEECCCCCe-EEEeC-----CCc--ceEEECCCEEEEEECCCCcEEEEEECCCC
Confidence            8775422  24677777766553 33332     223  337788888877642  356666666543

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=93.36  E-value=3.9  Score=45.54  Aligned_cols=195  Identities=12%  Similarity=0.121  Sum_probs=115.9

Q ss_pred             cCCCEEEEEc--CCeEEEEEcCCceeeEEecCC-CCCeeEEEEc--CCCCCEEEEEeC-------CCeE---------EE
Q 001310          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMPP-SPTATSLAFN--PHDNNVIAIGMD-------DSTI---------LI  870 (1103)
Q Consensus       812 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~-~~~i~~l~~s--~~d~~~lasg~~-------dg~v---------~i  870 (1103)
                      .||++|..-.  +..|...++...++-+.+..+ ...+..++|.  | +..|++.+++       ||..         -+
T Consensus       140 yDGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~  218 (638)
T 3sbq_A          140 YDGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTM  218 (638)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEE
T ss_pred             eeeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceE
Confidence            4789999887  477889999988876665543 4578888886  6 5667776653       2321         11


Q ss_pred             ---EEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC---------------eEEEEEcCC-------Cceeeee-
Q 001310          871 ---YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDVDG-------WGIQTCR-  924 (1103)
Q Consensus       871 ---wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg---------------~I~iwd~~~-------~~~~~~~-  924 (1103)
                         .|..+.+...++.- .+....+...++|++.++.+.+.               .+.++|+..       |+..... 
T Consensus       219 f~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g  297 (638)
T 3sbq_A          219 YNAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGD  297 (638)
T ss_dssp             EEEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTT
T ss_pred             EEEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECC
Confidence               12222222222211 12233355578888888876542               256666431       2211100 


Q ss_pred             -eeecCCCcc------------cCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceE-------------EEEeeCC
Q 001310          925 -SLQTPDGVM------------TLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC-------------LKQWFPI  976 (1103)
Q Consensus       925 -~~~~~~~~~------------~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~-------------~~~~~~~  976 (1103)
                       -+....+..            +.+...-.+.++|||++++++  .+.++.++|++....             ..+..  
T Consensus       298 ~gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e--  375 (638)
T 3sbq_A          298 SKTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE--  375 (638)
T ss_dssp             CCCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB--
T ss_pred             CCeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc--
Confidence             011111110            111345678999999999995  677899999984211             22211  


Q ss_pred             CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310          977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       977 h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      -.......+|.++|.-..|---|..|.-|++...
T Consensus       376 ~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a  409 (638)
T 3sbq_A          376 LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA  409 (638)
T ss_dssp             CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred             CCCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence            2556778999999955555568999999999864

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.26  E-value=4.1  Score=48.50  Aligned_cols=196  Identities=11%  Similarity=0.109  Sum_probs=108.0

Q ss_pred             cCCCEEEEEcC-----CeEEEEEcCCceeeEEe--------cCCCCCeeEEEEcCCCCCEEEEEeCCC------eEEEEE
Q 001310          812 KNDAYLFSASG-----GVISLYIVMTFKTILTI--------MPPSPTATSLAFNPHDNNVIAIGMDDS------TILIYN  872 (1103)
Q Consensus       812 ~d~~~l~~~~d-----g~i~iwd~~~~~~~~~~--------~~~~~~i~~l~~s~~d~~~lasg~~dg------~v~iwd  872 (1103)
                      .++..++.|+.     +.+.+||..+++-...-        ......-.++.+.. ++++++.|+.++      .+.+||
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~-~~~lyv~GG~~~~~~~~~dv~~yd  474 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISR-NNQLLLIGGRKAPHQGLSDNWIFD  474 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETT-TTEEEEECCBSSTTCBCCCCEEEE
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEcc-CCEEEEEcCCCCCCCccccEEEEe
Confidence            56777777752     45889998766433222        11112334444543 566888887543      688999


Q ss_pred             cCCcee--EEEeccCCCCEEEEEEccCCCEEEEEeCCC--eEEEEEcCCCceeeeeeee-cCCCcccCCCCceEEEEcCC
Q 001310          873 ARSSEV--ISKLEGHSKRVTGLVFSDALNILVSSGGDA--QIFVWDVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKD  947 (1103)
Q Consensus       873 ~~~~~~--~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg--~I~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~fs~d  947 (1103)
                      ..+.+-  +..+......- +++...++++++.||.++  .+.+||..+.+........ .+...    ....++.+..+
T Consensus       475 ~~t~~W~~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r----~~~~a~v~~~~  549 (695)
T 2zwa_A          475 MKTREWSMIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNS----LVSAGLEFDPV  549 (695)
T ss_dssp             TTTTEEEECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSC----CBSCEEEEETT
T ss_pred             CCCCcEEECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcc----cceeEEEEeCC
Confidence            888542  22222111111 223324788999988765  6899999986643322100 11111    12334666666


Q ss_pred             -CCEEEEE-e--C-----CeEEEEECCCce------EEEEee-CCCCcCeEEEEEccCCCEEEEEecC--------CcEE
Q 001310          948 -QTRFLLV-H--E-----THLAIYEAEELT------CLKQWF-PISSVPISQATFSCDCRMVFTSFVD--------GTLS 1003 (1103)
Q Consensus       948 -g~~l~~~-~--d-----~~v~iwd~~~~~------~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~d--------g~v~ 1003 (1103)
                       +++++.| .  +     +.+.+||..+.+      ...... ......-.+++...+++.++.|+.+        ..|.
T Consensus       550 ~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          550 SKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence             6666664 3  2     359999998776      211111 1111111123333447888888743        4699


Q ss_pred             EEeCCCceeE
Q 001310         1004 IHEASNLEVQ 1013 (1103)
Q Consensus      1004 vWd~~~~~~~ 1013 (1103)
                      +||+.+.+..
T Consensus       630 ~yd~~t~~W~  639 (695)
T 2zwa_A          630 SLDPLSETLT  639 (695)
T ss_dssp             EEETTTTEEE
T ss_pred             EEECCCCeEE
Confidence            9999998876

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=91.49  E-value=11  Score=38.70  Aligned_cols=222  Identities=13%  Similarity=0.100  Sum_probs=108.5

Q ss_pred             CceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe
Q 001310          336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY  415 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~  415 (1103)
                      .|..|+.....  .++. . ||.|..|-.....++..             +      ......|..++...+-. ++. .
T Consensus        25 ~i~~ia~G~~h--~~~l-~-~G~v~~wG~n~~Gqlg~-------------p------~~~~~~i~~ia~G~~hs-~~l-~   79 (282)
T 3qhy_B           25 GVDAIAGGYFH--GLAL-K-GGKVLGWGANLNGQLTM-------------P------AATQSGVDAIAAGNYHS-LAL-K   79 (282)
T ss_dssp             SCCEEEECSSE--EEEE-E-TTEEEEEECCSSSTTSC-------------C------GGGGSCCCEEEECSSEE-EEE-E
T ss_pred             CCcEEEeCCCe--EEEE-E-CCEEEEEeCCCCCCCCC-------------C------ccCCCCEEEEEeCCCEE-EEE-E
Confidence            45566655443  2333 3 78888887654333221             0      00123566666654332 333 4


Q ss_pred             CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeee
Q 001310          416 SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA  495 (1103)
Q Consensus       416 ~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~  495 (1103)
                       ||.|..|-......+...   ..-...|..++...+-    .+.-. ||.|..|-....-.+.........|..++.- 
T Consensus        80 -~G~v~~wG~n~~Gqlg~P---~~~~~~v~~ia~G~~h----s~al~-~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G-  149 (282)
T 3qhy_B           80 -DGEVIAWGGNEDGQTTVP---AEARSGVDAIAAGAWA----SYALK-DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG-  149 (282)
T ss_dssp             -TTEEEEEECCTTSTTCCC---GGGSSSEEEEEEETTE----EEEEE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC-
T ss_pred             -CCEEEEeeCCCCCCCCCC---cccCCCeEEEECcCCE----EEEEe-CCeEEEecCCCCCcCCCCccCCCCeEEEEcc-
Confidence             899999987654333211   1113467777765443    23334 8999999755422221111123446666542 


Q ss_pred             cCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc
Q 001310          496 KENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ  575 (1103)
Q Consensus       496 ~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~  575 (1103)
                        ....++ -. ||.|..|-.......-........|..++...+...++   .    ++.++.|-......+..-..  
T Consensus       150 --~~~~~~-l~-~G~v~~wG~n~~gqlg~p~~~~~~v~~i~~G~~hs~al---~----~G~v~~wG~n~~gqlg~p~~--  216 (282)
T 3qhy_B          150 --VYTALA-VK-NGGVIAWGDNYFGQTTVPAEAQSGVDDVAGGIFHSLAL---K----DGKVIAWGDNRYKQTTVPTE--  216 (282)
T ss_dssp             --SSEEEE-EE-TTEEEEEECCTTSTTSCCGGGGSSEEEEEECSSEEEEE---E----TTEEEEEECCTTSTTCCCGG--
T ss_pred             --cCEEEE-EE-CCEEEEecCCCCCCCCCceecCCCeEEEEecCCEEEEE---E----CCeEEEEECCCCCCCCCCcc--
Confidence              222333 34 79999996654332211111123455555443332222   2    44588886543211111001  


Q ss_pred             ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001310          576 LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK  609 (1103)
Q Consensus       576 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~  609 (1103)
                       ....|..++.....  .++.. ||.|+.|-...
T Consensus       217 -~~~~v~~i~~G~~h--~~al~-~g~v~~wG~n~  246 (282)
T 3qhy_B          217 -ALSGVSAIASGEWY--SLALK-NGKVIAWGSSR  246 (282)
T ss_dssp             -GGSSCCEEEECSSC--EEEEE-TTEEEEESTTC
T ss_pred             -cCCCceEEEcCCCE--EEEEE-CCEEEEecCCC
Confidence             12356666655443  33333 89999997654

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=90.31  E-value=34  Score=40.38  Aligned_cols=250  Identities=8%  Similarity=0.001  Sum_probs=124.2

Q ss_pred             EEE-ecCCCceEEEEEcCC----CcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          339 SMD-FHPVQHTLLLVGTNV----GDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       339 ~v~-~spdg~~llasgs~d----~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      .+. ++||+++++++-|..    ..++++|+++++.+.. .|. ...+...  +       -......++|..+...+++
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~~--~-------~~~~~~~~~W~d~~~~~~~  201 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSGK--L-------LEGKFTYPTWINKDTIIFN  201 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTCC--B-------CCEETCCEEEEETTEEEEC
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-ccccccc--c-------cccccceeeEECCCEEEEE
Confidence            444 899999766665543    4699999999986642 110 0000000  0       0001123466533333332


Q ss_pred             E----------eCCCeEEEEEecCCCccccceEeccccccE-EEEEEecCCCc---eEEEEEcCC---CceEEEeCCC--
Q 001310          414 A----------YSKHIVQLYAYHGGSDARQQLEIDAHVGNV-NDLAFSAPCKQ---ISVITCGDD---KTIKVWDAVT--  474 (1103)
Q Consensus       414 ~----------~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v-~~~~~s~d~~~---~~l~s~~~d---~~i~iwd~~~--  474 (1103)
                      .          +....|+.|.+.+...-. ...+.+....+ .....+++++.   ..+++.+.+   ..+.+.|...  
T Consensus       202 ~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~-~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~  280 (711)
T 4hvt_A          202 LVLHKNEITSSLYPNSLYIWKRGESIEKA-KKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKN  280 (711)
T ss_dssp             CCCSTTCBCTTSSBCEEEEEETTSCGGGC-EEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSS
T ss_pred             eCCCCCCcCcCCCCCEEEEEECCCChHHC-eEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCC
Confidence            1          112468888876643211 11343333332 34555677764   135554422   3455666543  


Q ss_pred             CceeEEeecCCCceEEEEeeecCCccEEEEE----------ECCCeEEEEEcCCCC-------eeEE-e-cCCCccEEEE
Q 001310          475 GSRTYSFEGHGAPVYSLCPHAKENIHFIFSI----------SVDGKIKAWLYDSLG-------ARVD-Y-DAPGLGCTRM  535 (1103)
Q Consensus       475 ~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~----------~~dg~i~iwd~~~~~-------~~~~-~-~~~~~~i~~~  535 (1103)
                      ++ +..+.......  +..  ..++.+++..          ...+.|...++.+..       .... + ......+..+
T Consensus       281 ~~-~~~l~~~~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  355 (711)
T 4hvt_A          281 LK-LQKINMPSDAT--LQG--SFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFI  355 (711)
T ss_dssp             CE-EEECCSCTTCE--EEE--EETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEE
T ss_pred             Cc-ceEeecCCcce--Eee--eECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEE
Confidence            33 22332222111  111  1133444422          246678888887631       1222 2 3334467788


Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCe-eEEE-EecccccCCceEEEEEcCCCCEEEE-Ee---CCCcEEEEECCC
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGA-IKRT-YQGLQLQHNSVSVVHFDTAKDQILA-AG---DDHVIKIWDMNK  609 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~-~~---~dg~i~iwd~~~  609 (1103)
                      .+..+ ..+++...  ++...+.++++.+++ .... +....  .+.+......+++..++. .+   .-+.++.+|+. 
T Consensus       356 ~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~--~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~-  429 (711)
T 4hvt_A          356 STTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPY--QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT-  429 (711)
T ss_dssp             EECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCS--TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT-
T ss_pred             EEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCC--CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC-
Confidence            88876 34444433  446678999987775 2233 32221  145666666677655544 33   44678888877 


Q ss_pred             Ce
Q 001310          610 VQ  611 (1103)
Q Consensus       610 ~~  611 (1103)
                      ++
T Consensus       430 ~~  431 (711)
T 4hvt_A          430 HE  431 (711)
T ss_dssp             SC
T ss_pred             Cc
Confidence            44

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=90.31  E-value=17  Score=38.87  Aligned_cols=171  Identities=13%  Similarity=0.164  Sum_probs=94.9

Q ss_pred             eEEEEEcCCc--eeeEEecCC------CCCeeEEEEc---CC---CCCEEEEEe-CCCeEEEEEcCCceeEEEec-----
Q 001310          824 VISLYIVMTF--KTILTIMPP------SPTATSLAFN---PH---DNNVIAIGM-DDSTILIYNARSSEVISKLE-----  883 (1103)
Q Consensus       824 ~i~iwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~---d~~~lasg~-~dg~v~iwd~~~~~~~~~l~-----  883 (1103)
                      +|.+||+.+.  +.++++.-+      ...+..+++.   |.   ++.++...+ ..+.|.|+|+.+++.-+.+.     
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            5777888888  887776432      3457788887   21   134444444 46789999999987654442     


Q ss_pred             ---------cC----CCCEEEEEEccC----CCEEEEEeCCCeEEEEEcCCCceeee---eeeecCCCcccCCCCceEEE
Q 001310          884 ---------GH----SKRVTGLVFSDA----LNILVSSGGDAQIFVWDVDGWGIQTC---RSLQTPDGVMTLAPSETHIQ  943 (1103)
Q Consensus       884 ---------~h----~~~V~~l~~s~d----g~~l~s~s~dg~I~iwd~~~~~~~~~---~~~~~~~~~~~~~~~v~~l~  943 (1103)
                               |.    ...|..|++||+    ++.|....-.+ -++|.+.+.-+...   ..++.. |.......-..++
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss-~~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~  281 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSA-IKVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALA  281 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSC-SEEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCC-CcEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEE
Confidence                     10    246888999998    67777666554 24555543111110   011110 0000001223566


Q ss_pred             Ec-CCCCEEEEE-eCCeEEEEECCC-----ceEEEEeeCCCCcCeEEEEEccCCCEEEEE
Q 001310          944 FH-KDQTRFLLV-HETHLAIYEAEE-----LTCLKQWFPISSVPISQATFSCDCRMVFTS  996 (1103)
Q Consensus       944 fs-~dg~~l~~~-~d~~v~iwd~~~-----~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~  996 (1103)
                      +. .+|.+.++- ..+.|..|+..+     ...........-..+..+.+..+|.+.+++
T Consensus       282 ~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          282 YDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             ECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            75 567766664 778899999875     111111112223346667776676655544

>3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B

Probab=89.64  E-value=20  Score=36.72  Aligned_cols=183  Identities=9%  Similarity=0.011  Sum_probs=97.2

Q ss_pred             CeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec
Q 001310          804 AVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE  883 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~  883 (1103)
                      .|..++...+...++  .+|.+..|-....-.+..-..-...|..++...   ...+.-. ||.|+.|-....-.+....
T Consensus        64 ~i~~ia~G~~hs~~l--~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~  137 (282)
T 3qhy_B           64 GVDAIAAGNYHSLAL--KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA  137 (282)
T ss_dssp             CCCEEEECSSEEEEE--ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred             CEEEEEeCCCEEEEE--ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence            456666554433333  378888886653222111111124688888764   2444445 9999999866532221111


Q ss_pred             cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEE
Q 001310          884 GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYE  963 (1103)
Q Consensus       884 ~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd  963 (1103)
                      .....|..++...+...+  .. ||.|+.|-........     .+....   ..|..++...+...++  .++.|+.|=
T Consensus       138 ~~~~~i~~i~~G~~~~~~--l~-~G~v~~wG~n~~gqlg-----~p~~~~---~~v~~i~~G~~hs~al--~~G~v~~wG  204 (282)
T 3qhy_B          138 EAQSGVTALDGGVYTALA--VK-NGGVIAWGDNYFGQTT-----VPAEAQ---SGVDDVAGGIFHSLAL--KDGKVIAWG  204 (282)
T ss_dssp             GGGSSEEEEEECSSEEEE--EE-TTEEEEEECCTTSTTS-----CCGGGG---SSEEEEEECSSEEEEE--ETTEEEEEE
T ss_pred             cCCCCeEEEEcccCEEEE--EE-CCEEEEecCCCCCCCC-----CceecC---CCeEEEEecCCEEEEE--ECCeEEEEE
Confidence            233567777765443222  33 7999999776522111     111001   2466776655544444  699999997


Q ss_pred             CCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          964 AEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       964 ~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      ....-.+.. .......|..++...+-. ++. . ||.|+.|-...
T Consensus       205 ~n~~gqlg~-p~~~~~~v~~i~~G~~h~-~al-~-~g~v~~wG~n~  246 (282)
T 3qhy_B          205 DNRYKQTTV-PTEALSGVSAIASGEWYS-LAL-K-NGKVIAWGSSR  246 (282)
T ss_dssp             CCTTSTTCC-CGGGGSSCCEEEECSSCE-EEE-E-TTEEEEESTTC
T ss_pred             CCCCCCCCC-CcccCCCceEEEcCCCEE-EEE-E-CCEEEEecCCC
Confidence            654322221 111134566666544333 333 3 89999997654

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=88.82  E-value=13  Score=44.02  Aligned_cols=200  Identities=13%  Similarity=0.071  Sum_probs=101.1

Q ss_pred             cCCCceEEEEEcCC----CceEEEeCCCCceeEEe-e-----cCCCce-EEEEeeecCCccEEEEEECCC------eEEE
Q 001310          451 APCKQISVITCGDD----KTIKVWDAVTGSRTYSF-E-----GHGAPV-YSLCPHAKENIHFIFSISVDG------KIKA  513 (1103)
Q Consensus       451 ~d~~~~~l~s~~~d----~~i~iwd~~~~~~~~~~-~-----~~~~~v-~~~~~~~~~~~~~l~s~~~dg------~i~i  513 (1103)
                      .++.  +++.||.+    ..+.+||..+++-...- .     ...... .+++.. ..++.+++.|+.++      .+.+
T Consensus       396 ~~~~--iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~-~~~~~lyv~GG~~~~~~~~~dv~~  472 (695)
T 2zwa_A          396 AGND--VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTI-SRNNQLLLIGGRKAPHQGLSDNWI  472 (695)
T ss_dssp             CSSC--EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEE-TTTTEEEEECCBSSTTCBCCCCEE
T ss_pred             ECCE--EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEE-ccCCEEEEEcCCCCCCCccccEEE
Confidence            3455  56666643    45788888776543222 1     011111 112221 11456777776543      4677


Q ss_pred             EEcCCCCeeEEecCCCc-cEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEec--ccccCCceEEEEEcCC-
Q 001310          514 WLYDSLGARVDYDAPGL-GCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG--LQLQHNSVSVVHFDTA-  589 (1103)
Q Consensus       514 wd~~~~~~~~~~~~~~~-~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~-  589 (1103)
                      ||..+.+-...-..... .-.+++...+++.++.|+.+...  .+.+||..+.+-...-..  .........++.+..+ 
T Consensus       473 yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~--~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~  550 (695)
T 2zwa_A          473 FDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGP--AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS  550 (695)
T ss_dssp             EETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSC--SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred             EeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCC--CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence            77766432221111111 11233333478888888765543  699999998765433220  1101122333555555 


Q ss_pred             CCEEEEEeC--C-----CcEEEEECCCCe------eEEEEcCCCCCCC-CceEEEecCCCEEEEEEC--------CCeEE
Q 001310          590 KDQILAAGD--D-----HVIKIWDMNKVQ------LLTTIDAGGGLPE-NPRICFNKNGTLLAVIAN--------ENRIK  647 (1103)
Q Consensus       590 ~~~l~~~~~--d-----g~i~iwd~~~~~------~~~~~~~~~~~~~-v~~v~~s~~g~~l~~~~~--------dg~i~  647 (1103)
                      +..++.|+.  +     ..+.+||+.+..      ........ .... -.+++...++++++.|+.        ...+.
T Consensus       551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p-~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~  629 (695)
T 2zwa_A          551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHP-LFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSII  629 (695)
T ss_dssp             TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECG-GGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEE
T ss_pred             CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCC-CCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEE
Confidence            555666664  2     458899998876      22221110 0111 123334444777777764        34588


Q ss_pred             EEEcCCCCe
Q 001310          648 ILETPESNS  656 (1103)
Q Consensus       648 iw~~~~~~~  656 (1103)
                      +||..+.+.
T Consensus       630 ~yd~~t~~W  638 (695)
T 2zwa_A          630 SLDPLSETL  638 (695)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCeE
Confidence            888877643

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.69  E-value=33  Score=38.01  Aligned_cols=56  Identities=21%  Similarity=0.169  Sum_probs=35.3

Q ss_pred             ccEEEEEECCCCC-EEEEEeCCCeEEEEEecCCCccccceEec---------cccccEEEEEEecC
Q 001310          397 VSVNRVVWSPDGS-LLGVAYSKHIVQLYAYHGGSDARQQLEID---------AHVGNVNDLAFSAP  452 (1103)
Q Consensus       397 ~~V~~~~~spdg~-~las~~~d~~i~iwd~~~~~~~~~~~~l~---------~h~~~v~~~~~s~d  452 (1103)
                      ...+.|+|.|||. .|+++...|.|++++.........+..+.         +.......|+|+|+
T Consensus        14 ~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~   79 (463)
T 2wg3_C           14 RQPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN   79 (463)
T ss_dssp             SSEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred             CCceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence            3567899999996 55566788999999754321111111111         11456789999996

>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}

Probab=88.48  E-value=31  Score=37.38  Aligned_cols=260  Identities=12%  Similarity=0.071  Sum_probs=119.4

Q ss_pred             CCCeeEEEEec--CCCEEEEEcCCe--EEEEEcC-CceeeEEec------C--------CCCCeeEEEEcCCC-CCEEEE
Q 001310          802 QEAVPCFALSK--NDAYLFSASGGV--ISLYIVM-TFKTILTIM------P--------PSPTATSLAFNPHD-NNVIAI  861 (1103)
Q Consensus       802 ~~~v~~l~~s~--d~~~l~~~~dg~--i~iwd~~-~~~~~~~~~------~--------~~~~i~~l~~s~~d-~~~las  861 (1103)
                      ...|.+|++.|  ++.+.+.+..+.  -.||... .++.-..+.      .        ....|.++++.|.+ ...|.+
T Consensus        54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~  133 (394)
T 3b7f_A           54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA  133 (394)
T ss_dssp             TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred             CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence            45689999998  666776665541  1233332 222212211      1        11257789998733 445565


Q ss_pred             EeCCCeEEEEEcCCceeEEEecc-------------------CCCCEEEEEEccC-CCEEEEEeCCCeEEEEEcCCCcee
Q 001310          862 GMDDSTILIYNARSSEVISKLEG-------------------HSKRVTGLVFSDA-LNILVSSGGDAQIFVWDVDGWGIQ  921 (1103)
Q Consensus       862 g~~dg~v~iwd~~~~~~~~~l~~-------------------h~~~V~~l~~s~d-g~~l~s~s~dg~I~iwd~~~~~~~  921 (1103)
                      +...+.|...+ ..|+.-..+..                   ....+.+|.+.|. ...|..+..++.|...+ +.|+. 
T Consensus       134 g~~~ggl~~S~-DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~t-  210 (394)
T 3b7f_A          134 GTSPQGLFRST-DHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGTD-  210 (394)
T ss_dssp             EEETTEEEEES-STTSBCEECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTSS-
T ss_pred             EecCCcEEEEc-CCCCCeEECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCCC-
Confidence            66566555442 22322222211                   1235789999873 34444444444444332 22221 


Q ss_pred             eeeeeec-CC-Cccc-----CCCCceEEEEcCC-CCEEEEEeCCeEEEEECCCceEEEEeeCC-CC---cCeEEEEEcc-
Q 001310          922 TCRSLQT-PD-GVMT-----LAPSETHIQFHKD-QTRFLLVHETHLAIYEAEELTCLKQWFPI-SS---VPISQATFSC-  988 (1103)
Q Consensus       922 ~~~~~~~-~~-~~~~-----~~~~v~~l~fs~d-g~~l~~~~d~~v~iwd~~~~~~~~~~~~~-h~---~~v~~l~fs~-  988 (1103)
                       ...+.. .. ....     ....+.++++.|+ ...|.++..+.|+..+-. ++.-..+... ..   ..+..+.++| 
T Consensus       211 -W~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~gl~~s~D~-G~tW~~~~~~l~~~~~~~~~~i~~~p~  288 (394)
T 3b7f_A          211 -WKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCGIYRMDRR-EGVWKRIGDAMPREVGDIGFPIVVHQR  288 (394)
T ss_dssp             -CEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTEEEEEETT-TTEEECGGGGSCTTTCSCEEEEEECSS
T ss_pred             -ceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCeEEEeCCC-CCcceECCCCCCCCCccceEEEEECCC
Confidence             111111 00 0000     0124788999986 356666666666655432 3332222111 11   3456788876 


Q ss_pred             CCCEEEEEec-----------CCcEEEEeCCC-ceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcE
Q 001310          989 DCRMVFTSFV-----------DGTLSIHEASN-LEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQ 1056 (1103)
Q Consensus       989 dg~~l~t~~~-----------dg~v~vWd~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~ 1056 (1103)
                      +...|.++..           ++...+|.... |+.-..+.  .-++...           .-..+....++++|.++..
T Consensus       289 ~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~~~--~glp~~~-----------~~~~~~~~~~~~~p~~~~~  355 (394)
T 3b7f_A          289 DPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQRQD--RGLPTDQ-----------AWLTVKRQAMTADAHAPVG  355 (394)
T ss_dssp             CTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEEEC--BTSCCSS-----------CCCCCCTBSEEECCSSSCC
T ss_pred             CCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceECC--CCCCCcc-----------ccceEEEEEEEECCCCCCE
Confidence            3344444432           23344555443 23222221  0111100           0000111245677765666


Q ss_pred             EEEEecCCcEEEEccCCCCCCCccC
Q 001310         1057 FAVGLTNGEVYVIEPNEPGDTWAVL 1081 (1103)
Q Consensus      1057 l~~~~~dg~v~vw~~~~~~~~w~~~ 1081 (1103)
                      |.+++.++.|  |.-...+.+|...
T Consensus       356 l~~g~~~g~l--~~S~D~G~tW~~~  378 (394)
T 3b7f_A          356 VYFGTTGGEI--WASADEGEHWQCI  378 (394)
T ss_dssp             EEEECTTSCE--EEESSTTSBCEEE
T ss_pred             EEEEeCCCeE--EEECCCCCCceEc
Confidence            7777666654  4444456678653

>4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi}

Probab=88.42  E-value=35  Score=40.29  Aligned_cols=244  Identities=10%  Similarity=0.019  Sum_probs=118.6

Q ss_pred             EEE-ECCCCCEEEEEe-CC----CeEEEEEecCCCccccceEecccc-----ccEEEEEEecCCCceEEEEE--------
Q 001310          401 RVV-WSPDGSLLGVAY-SK----HIVQLYAYHGGSDARQQLEIDAHV-----GNVNDLAFSAPCKQISVITC--------  461 (1103)
Q Consensus       401 ~~~-~spdg~~las~~-~d----~~i~iwd~~~~~~~~~~~~l~~h~-----~~v~~~~~s~d~~~~~l~s~--------  461 (1103)
                      .+. ++||+++++.+- ..    ..++++|+.+++.+.....-....     .....++|..++.  ++++.        
T Consensus       133 g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~~  210 (711)
T 4hvt_A          133 GVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEIT  210 (711)
T ss_dssp             EEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCBC
T ss_pred             ceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCcC
Confidence            344 899999988762 22    369999999987553211100000     0113447774443  34432        


Q ss_pred             --cCCCceEEEeCCCCc--eeEEeecCCCceE-EEEeeecCCcc---EEEEEECC---CeEEEEEcCCCCe-eEEecCCC
Q 001310          462 --GDDKTIKVWDAVTGS--RTYSFEGHGAPVY-SLCPHAKENIH---FIFSISVD---GKIKAWLYDSLGA-RVDYDAPG  529 (1103)
Q Consensus       462 --~~d~~i~iwd~~~~~--~~~~~~~~~~~v~-~~~~~~~~~~~---~l~s~~~d---g~i~iwd~~~~~~-~~~~~~~~  529 (1103)
                        +....|+.|.+-+..  -...+.+....+. +.....++...   .+++.+.+   ..+.+.+.+.... ...+....
T Consensus       211 ~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  290 (711)
T 4hvt_A          211 SSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMPS  290 (711)
T ss_dssp             TTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSCT
T ss_pred             cCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecCC
Confidence              112458888776543  2234444444432 22222222221   35554423   3355555543222 23333222


Q ss_pred             ccEEEEEEccCCCEEEEEecC------CCCceeEEEEeCCCCe-------eEEE-EecccccCCceEEEEEcCCCCEEEE
Q 001310          530 LGCTRMAYSANGRRLFSCGTS------KEGESFLVEWNESEGA-------IKRT-YQGLQLQHNSVSVVHFDTAKDQILA  595 (1103)
Q Consensus       530 ~~i~~~~~s~dg~~l~~~~~~------~~~~~~i~iwd~~~~~-------~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~  595 (1103)
                      ..  .+..+.++.+++....+      .-..+.|...|+.++.       ..+. +....  ...+..+.+..+ ..+++
T Consensus       291 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~~-~l~~~  365 (711)
T 4hvt_A          291 DA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTA--NEVFNFISTTKD-RVFLA  365 (711)
T ss_dssp             TC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCT--TEEEEEEEECSS-CEEEE
T ss_pred             cc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCC--CCeEEEEEEECC-EEEEE
Confidence            21  12344566555533221      0125568888876531       1222 32222  356778888865 56666


Q ss_pred             EeCCCc--EEEEECCCCe-eEEE-EcCCCCCCCCceEEEecCCCE-EEEEEC---CCeEEEEEcC
Q 001310          596 AGDDHV--IKIWDMNKVQ-LLTT-IDAGGGLPENPRICFNKNGTL-LAVIAN---ENRIKILETP  652 (1103)
Q Consensus       596 ~~~dg~--i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~g~~-l~~~~~---dg~i~iw~~~  652 (1103)
                      ...++.  ++++++.++. .... +..... ..+.....++++.. +++.+.   -+.+..++..
T Consensus       366 ~~~~~~~~l~~~~~~~g~~~~~~~i~lp~~-~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~  429 (711)
T 4hvt_A          366 TYDNVVAKVVTFTLENEQWTKPVVLKLPYQ-NAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT  429 (711)
T ss_dssp             EEETTEEEEEEECEETTEECCCEEECCCST-TCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred             EEECCEEEEEEEECCCCceEEEeccCCCCC-eEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence            666664  6677776664 2333 333321 22444555566554 444333   3566666665

>3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A*

Probab=87.85  E-value=32  Score=36.78  Aligned_cols=171  Identities=12%  Similarity=0.092  Sum_probs=93.7

Q ss_pred             ceEEEeCCCC--ceeEEeecC------CCceEEEEee-ecC----CccEE-EEEECCCeEEEEEcCCCCeeEEec----C
Q 001310          466 TIKVWDAVTG--SRTYSFEGH------GAPVYSLCPH-AKE----NIHFI-FSISVDGKIKAWLYDSLGARVDYD----A  527 (1103)
Q Consensus       466 ~i~iwd~~~~--~~~~~~~~~------~~~v~~~~~~-~~~----~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~----~  527 (1103)
                      .|.+||+.++  +.++++.-.      ...+..+.+. ..+    ++.++ ++-+..+.|.++|+.+++......    .
T Consensus       124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~p  203 (381)
T 3q6k_A          124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKA  203 (381)
T ss_dssp             EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSC
T ss_pred             eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCcc
Confidence            4678899998  888776532      3456777776 211    12343 444457789999998876654331    1


Q ss_pred             C--------------CccEEEEEEccC----CCEEEEEecCCCCceeEEEEe---CCCC---eeEEEEecccccCCceEE
Q 001310          528 P--------------GLGCTRMAYSAN----GRRLFSCGTSKEGESFLVEWN---ESEG---AIKRTYQGLQLQHNSVSV  583 (1103)
Q Consensus       528 ~--------------~~~i~~~~~s~d----g~~l~~~~~~~~~~~~i~iwd---~~~~---~~~~~~~~~~~~~~~v~~  583 (1103)
                      .              ...+..++++|+    ++.|+.....+.   .++-..   ++..   ..++. .+.......-..
T Consensus       204 d~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~~~~~LYf~plss~---~ly~V~T~~L~~~~~~~~v~~-~G~kg~~s~~~~  279 (381)
T 3q6k_A          204 ERPTKFDYGGKEYEFKAGIFGITLGDRDSEGNRPAYYLAGSAI---KVYSVNTKELKQKGGKLNPEL-LGNRGKYNDAIA  279 (381)
T ss_dssp             CSCEEEEETTEEEEECCCEEEEEECCCCTTSCCEEEEEESSCS---EEEEEEHHHHSSTTCCCCCEE-EEECCTTCCEEE
T ss_pred             ccCcceEECCEEeEeccCceEEEecCCcCCCCeEEEEEECCCC---cEEEEEHHHhhCcchhhceEE-eeecCCCCCcce
Confidence            1              125788999998    788877665331   122221   1111   11111 122200123345


Q ss_pred             EEEc-CCCCEEEEEeCCCcEEEEECCC-C---eeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310          584 VHFD-TAKDQILAAGDDHVIKIWDMNK-V---QLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1103)
Q Consensus       584 ~~~~-~~~~~l~~~~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~  640 (1103)
                      +++. .+|..+++--..+.|..|+..+ .   +....+...........+.+.++|.+.+..
T Consensus       280 ~~~D~~~G~ly~~~~~~~aI~~w~~~~~~~~~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s  341 (381)
T 3q6k_A          280 LAYDPKTKVIFFAEANTKQVSCWNTQKMPLRMKNTDVVYTSSRFVFGTDISVDSKGGLWFMS  341 (381)
T ss_dssp             EEECTTTCEEEEEESSSSEEEEEETTSCSBCGGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred             EEEeCCCCeEEEEeccCCeEEEEeCCCCccccCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence            5665 5666666667888999999875 1   222333222233345566666666544443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	1103
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	5e-16
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	6e-15
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-14
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-10
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-09
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-15
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	1e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-14
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	5e-09
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	7e-07
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	9e-14
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	7e-12
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	1e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-06
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	5e-04
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.003
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	7e-13
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	1e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-04
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-11
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	4e-09
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	0.002
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-10
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.004
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-10
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	4e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-06
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-05
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	0.002
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	2e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	7e-08
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	8e-06
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	3e-04
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	3e-09
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	5e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	7e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-08
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-07
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-05
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	0.002
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-08
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	3e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-05
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	6e-04
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	4e-08
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	6e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.002
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-08
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	8e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-06
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	6e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-07
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-04
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-07
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-06
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	5e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	6e-06
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-04
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.003
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	4e-07
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	5e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-05
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	7e-06
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	0.002
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	7e-06
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	5e-04
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	1e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	3e-05
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-04
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	9e-05
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.001
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.004

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 78.6 bits (192), Expect = 5e-16
 Identities = 25/139 (17%), Positives = 46/139 (33%), Gaps = 8/139 (5%)

Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL 435
           K+WD+                  +N + + P+G+           +L+      +     
Sbjct: 209 KLWDVREGMCRQT---FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYS 265

Query: 436 EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA 495
             +   G +  ++FS   + +  +   DD    VWDA+   R     GH   V  L    
Sbjct: 266 HDNIICG-ITSVSFSKSGRLL--LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTD 322

Query: 496 KENIHFIFSISVDGKIKAW 514
                 + + S D  +K W
Sbjct: 323 DGM--AVATGSWDSFLKIW 339

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.2 bits (183), Expect = 6e-15
 Identities = 29/150 (19%), Positives = 52/150 (34%), Gaps = 11/150 (7%)

Query: 459 ITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIK--AWLY 516
           ++   D + K+WD   G    +F GH + + ++C     N     + S D   +      
Sbjct: 200 VSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFATGSDDATCRLFDLRA 257

Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
           D       +D    G T +++S +GR L +             W+  +        G   
Sbjct: 258 DQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFN----CNVWDALKADRAGVLAG--- 310

Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
             N VS +        +     D  +KIW+
Sbjct: 311 HDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 74.4 bits (181), Expect = 1e-14
 Identities = 26/164 (15%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 754 SNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN 813
           +  V  +   P   L +S         +L+  R G        T +  +  +       N
Sbjct: 184 TGDVMSLSLAPDTRLFVSGACDASA--KLWDVREGMCRQ----TFTGHESDINAICFFPN 237

Query: 814 DAYLFSASGG---VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI 870
                + S      +            +        TS++F+     ++  G DD    +
Sbjct: 238 GNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRLLLAGYDDFNCNV 296

Query: 871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           ++A  ++    L GH  RV+ L  +D    + +   D+ + +W+
Sbjct: 297 WDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.9 bits (146), Expect = 3e-10
 Identities = 24/155 (15%), Positives = 47/155 (30%), Gaps = 8/155 (5%)

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
                D  +   G  D++  +++ R         GH   +  + F    N   +   DA  
Sbjct: 191  SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250

Query: 911  FVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHET-HLAIYEAEELTC 969
             ++D+         S       +T       + F K     L  ++  +  +++A +   
Sbjct: 251  RLFDLRADQELMTYSHDNIICGIT------SVSFSKSGRLLLAGYDDFNCNVWDALKADR 304

Query: 970  LKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
                       +S    + D   V T   D  L I
Sbjct: 305  AGV-LAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.8 bits (138), Expect = 3e-09
 Identities = 40/293 (13%), Positives = 95/293 (32%), Gaps = 11/293 (3%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +  + W  D  LL  A     + ++  +  +       I      V   A++     ++
Sbjct: 57  KIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHA---IPLRSSWVMTCAYAPSGNYVA 113

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
                +  +I       G+   S E  G   Y        + + I + S D     W  +
Sbjct: 114 CGGLDNICSIYNLKTREGNVRVSRELAGHTGYL-SCCRFLDDNQIVTSSGDTTCALWDIE 172

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +      +         ++ + + R   S       ++    W+  EG  ++T+ G    
Sbjct: 173 TGQQTTTFTGHTGDVMSLSLAPDTRLFVSG----ACDASAKLWDVREGMCRQTFTG---H 225

Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL 637
            + ++ + F    +      DD   +++D+   Q L T      +     + F+K+G LL
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLL 285

Query: 638 AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV 690
               ++    + +  +++         + +  L V         G  +  + +
Sbjct: 286 LAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKI 338

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 3e-09
 Identities = 22/144 (15%), Positives = 38/144 (26%), Gaps = 23/144 (15%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
           QT     S   ++ F P  +           TG  D                        
Sbjct: 220 QTFTGHESDINAICFFPNGNAFA--------TGSDD----------ATCRLFDLRADQEL 261

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
            T    +    +  V +S  G LL   Y      ++         +   +  H   V+ L
Sbjct: 262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA---DRAGVLAGHDNRVSCL 318

Query: 448 AFSAPCKQISVITCGDDKTIKVWD 471
             +     +   T   D  +K+W+
Sbjct: 319 GVTDDGMAV--ATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 57.4 bits (137), Expect = 4e-09
 Identities = 26/217 (11%), Positives = 66/217 (30%), Gaps = 10/217 (4%)

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
           R +  +  H+  +  + +    + +  ++   D  + +WD+ T ++ ++     + V + 
Sbjct: 46  RTRRTLRGHLAKIYAMHWGTDSRLL--VSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTC 103

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
                 + +++    +D     +   +    V       G T               TS 
Sbjct: 104 AYA--PSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSS 161

Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
              +  +   E+                 V  +         ++   D   K+WD+ +  
Sbjct: 162 GDTTCALWDIETGQQTTTFTG----HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGM 217

Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
              T            ICF  NG   A  +++   ++
Sbjct: 218 CRQTFTGHESDINA--ICFFPNGNAFATGSDDATCRL 252

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 46.7 bits (109), Expect = 1e-05
 Identities = 23/130 (17%), Positives = 40/130 (30%), Gaps = 11/130 (8%)

Query: 825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI--YNARSSEVISKL 882
             L+ V       T         ++ F P + N  A G DD+T  +    A    +    
Sbjct: 208 AKLWDVREGMCRQTFTGHESDINAICFFP-NGNAFATGSDDATCRLFDLRADQELMTYSH 266

Query: 883 EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHI 942
           +     +T + FS +  +L++   D    VWD           L   D  +      + +
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKA--DRAGVLAGHDNRV------SCL 318

Query: 943 QFHKDQTRFL 952
               D     
Sbjct: 319 GVTDDGMAVA 328

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.8 bits (182), Expect = 7e-15
 Identities = 43/311 (13%), Positives = 86/311 (27%), Gaps = 65/311 (20%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
           +  H   V  + F      +  ++  +D TIKVWD  TG    + +GH   V  +     
Sbjct: 13  LSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHS 70

Query: 497 ENIH----------------------------------------FIFSISVDGKIKAWLY 516
             +                                          I S S D  IK W  
Sbjct: 71  GKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV 130

Query: 517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQL 576
            +      +         +  + +G  + SC   +     +  W  +    K   +  + 
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQ----TVRVWVVATKECKAELREHRH 186

Query: 577 QHNSVS-----------------VVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
               +S                           +L+   D  IK+WD++    L T+   
Sbjct: 187 VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGH 246

Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVT 679
                   + F+  G  +   A++  +++ +      +         +  L  +  +   
Sbjct: 247 DNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYV 304

Query: 680 GAGIANGSVSV 690
             G  + +V V
Sbjct: 305 VTGSVDQTVKV 315

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 33/188 (17%), Positives = 61/188 (32%), Gaps = 9/188 (4%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF-IRNFKVWDIGACSML 386
           +T          +  +    TL+   +N     +W V + +    +R  +          
Sbjct: 137 KTFTGHREWVRMVRPNQ-DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAP 195

Query: 387 FKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVND 446
             +                  G  L        ++++    G      + +  H   V  
Sbjct: 196 ESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTG---MCLMTLVGHDNWVRG 252

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSIS 506
           + F +  K I  ++C DDKT++VWD        +   H   V SL  H      ++ + S
Sbjct: 253 VLFHSGGKFI--LSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAP--YVVTGS 308

Query: 507 VDGKIKAW 514
           VD  +K W
Sbjct: 309 VDQTVKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 74.0 bits (180), Expect = 1e-14
 Identities = 45/326 (13%), Positives = 94/326 (28%), Gaps = 55/326 (16%)

Query: 323 PKTVAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------- 370
           P+   +  + G  SP   + FHP   ++++  +      +WD  +G              
Sbjct: 5   PRPPEKYALSGHRSPVTRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQ 63

Query: 371 ------------FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKH 418
                                +           +     +V+ V   P+G  +  A    
Sbjct: 64  DISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDK 123

Query: 419 IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT 478
            ++++                H   V  +  +     I   +C +D+T++VW   T    
Sbjct: 124 TIKMWEVQ---TGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECK 178

Query: 479 YSFEGHGAPVYSLCPHAKENI------------------HFIFSISVDGKIKAWLYDSLG 520
                H   V  +    + +                    F+ S S D  IK W   +  
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238

Query: 521 ARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNS 580
             +           + + + G+ + SC   K     L  W+       +T        + 
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKT----LRVWDYKNKRCMKTLNA---HEHF 291

Query: 581 VSVVHFDTAKDQILAAGDDHVIKIWD 606
           V+ + F      ++    D  +K+W+
Sbjct: 292 VTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 72.9 bits (177), Expect = 3e-14
 Identities = 30/174 (17%), Positives = 60/174 (34%), Gaps = 8/174 (4%)

Query: 742 YNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS 801
            N  G  I + +++    +W     +          V   +          +++ T S  
Sbjct: 151 PNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSE- 209

Query: 802 QEAVPCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
                     K   +L S S    I ++ V T   ++T++        + F+      I 
Sbjct: 210 -----TKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFIL 263

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
              DD T+ +++ ++   +  L  H   VT L F      +V+   D  + VW+
Sbjct: 264 SCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.7 bits (135), Expect = 5e-09
 Identities = 25/167 (14%), Positives = 56/167 (33%), Gaps = 28/167 (16%)

Query: 806 PCFALSKNDAYLFSASG-GVISLYIVMTFKTILTIMPPSPTATSLAFNP----------- 853
                +++   + S S    + +++V T +    +         +++ P           
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206

Query: 854 --------HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSG 905
                        +  G  D TI +++  +   +  L GH   V G++F      ++S  
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266

Query: 906 GDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
            D  + VWD      +  ++L   +  +      T + FHK     +
Sbjct: 267 DDKTLRVWDYKNK--RCMKTLNAHEHFV------TSLDFHKTAPYVV 305

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.1 bits (118), Expect = 7e-07
 Identities = 20/227 (8%), Positives = 63/227 (27%), Gaps = 11/227 (4%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
            T + F+P   +V+    +D+TI +++  + +    L+GH+  V  + F  +  +      
Sbjct: 21   TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL------ 73

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
                         +   +  +    +     + + +    +    +             +
Sbjct: 74   --LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 131

Query: 967  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026
                 + F      +     + D  ++ +   D T+ +   +  E +  +    +     
Sbjct: 132  TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL--REHRHVVE 189

Query: 1027 SHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073
                     Y S                     G  +  + + + + 
Sbjct: 190  CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 236

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.1 bits (105), Expect = 3e-05
 Identities = 25/146 (17%), Positives = 46/146 (31%), Gaps = 9/146 (6%)

Query: 871  YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD 930
            +  R  E  + L GH   VT ++F    +++VS+  DA I VWD +       R+L+   
Sbjct: 3    WIPRPPEKYA-LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG--DFERTLKGHT 59

Query: 931  GVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDC 990
                   S   I F                     +     +        +S  +   + 
Sbjct: 60   D------SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNG 113

Query: 991  RMVFTSFVDGTLSIHEASNLEVQCRI 1016
              + ++  D T+ + E          
Sbjct: 114  DHIVSASRDKTIKMWEVQTGYCVKTF 139

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 72.1 bits (175), Expect = 9e-14
 Identities = 28/193 (14%), Positives = 61/193 (31%), Gaps = 27/193 (13%)

Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
               ++   P     +  G+      +WD  +G  +   + +                  
Sbjct: 205 DGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKD--------- 255

Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV---------GNVN 445
              SV  VV++ DG  +        V+L+     ++       ++             V 
Sbjct: 256 ---SVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVL 312

Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----F 501
            +A +   + I  ++   D+ +  WD  +G+     +GH   V S+      ++      
Sbjct: 313 SVATTQNDEYI--LSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNV 370

Query: 502 IFSISVDGKIKAW 514
             + S D K + W
Sbjct: 371 FATGSGDCKARIW 383

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 71.8 bits (174), Expect = 1e-13
 Identities = 44/398 (11%), Positives = 116/398 (29%), Gaps = 54/398 (13%)

Query: 538 SANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH-NSVSVVHFDTAKDQILAA 596
             + + +      +  + +++ +N +            L H + V  V F     + LA 
Sbjct: 22  DLDSQSVPDALKKQTNDYYIL-YNPALPREIDVELHKSLDHTSVVCCVKFS-NDGEYLAT 79

Query: 597 GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNS 656
           G +   +++ ++   L+  +       ++P                          E+ +
Sbjct: 80  GCNKTTQVYRVSDGSLVARLSDDSAANKDP--------------------------ENLN 113

Query: 657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL 716
             ++      +R +  +P     G  +A G+        +    +I +  +   +    L
Sbjct: 114 TSSSPSSDLYIRSVCFSP----DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSL 169

Query: 717 FARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATT 776
              PS  + +              T               V +     +     S +   
Sbjct: 170 DYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAV 229

Query: 777 KVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-------------GG 823
           +V           +    + + +  +++V     +++   + S S               
Sbjct: 230 RVWD-SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN 288

Query: 824 VISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
                   +    +T +       S+A    ++  I  G  D  +L ++ +S   +  L+
Sbjct: 289 KSDSKTPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347

Query: 884 GHSKRVTGLVFSDAL------NILVSSGGDAQIFVWDV 915
           GH   V  +  ++        N+  +  GD +  +W  
Sbjct: 348 GHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKY 385

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 66.4 bits (160), Expect = 7e-12
 Identities = 41/337 (12%), Positives = 104/337 (30%), Gaps = 26/337 (7%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
              ++ +S    + F       L  G N   T ++ V+    L  R              
Sbjct: 56  HKSLDHTSVVCCVKFSN-DGEYLATGCN-KTTQVYRVSD-GSLVARLSDDSAANKDPENL 112

Query: 388 KTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
            T+      + +  V +SPDG  L       +++++         +++ +       +  
Sbjct: 113 NTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE-----NRKIVMILQGHEQDIY 167

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
           +         +++   D+T+++WD  TG  + +                    +I + S+
Sbjct: 168 SLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGK--YIAAGSL 225

Query: 508 DGKIKAWLYDSLGARVDYDAPGL-------GCTRMAYSANGRRLFSCGTSKEGESFLVEW 560
           D  ++ W  ++       D+              + ++ +G+ + S    +  + + ++ 
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQN 285

Query: 561 NESEGAIKRTYQGLQLQH-----NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
             ++   K    G          + V  V      + IL+   D  +  WD      L  
Sbjct: 286 ANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLM 345

Query: 616 IDAGGG----LPENPRICFNKNGTLLAVIANENRIKI 648
           +         +             + A  + + + +I
Sbjct: 346 LQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 23/171 (13%), Positives = 58/171 (33%), Gaps = 17/171 (9%)

Query: 851  FNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-------GHSKRVTGLVFSDALNILVS 903
             +P D   IA G  D  + ++++ +  ++ +L+       GH   V  +VF+     +VS
Sbjct: 212  VSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVS 271

Query: 904  SGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH----IQFHKDQTRFLLVHETH- 958
               D  + +W++     ++                       +   ++    L   +   
Sbjct: 272  GSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRG 331

Query: 959  LAIYEAEELTCLKQW----FPISSVPISQ-ATFSCDCRMVFTSFVDGTLSI 1004
            +  ++ +    L         + SV ++  ++   +  +  T   D    I
Sbjct: 332  VLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARI 382

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.9 bits (112), Expect = 5e-06
 Identities = 44/345 (12%), Positives = 95/345 (27%), Gaps = 43/345 (12%)

Query: 337 PMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPG 396
           P  +D         L         L++            +  D+     L  T+      
Sbjct: 18  PFLLDLDSQSVPDALKKQTNDYYILYNPALP--------REIDVELHKSLDHTS------ 63

Query: 397 VSVNRVVWSPDGSLLGVAYSKHIV--------QLYAYHGGSDARQQLEI------DAHVG 442
             V  V +S DG  L    +K            +      S A +  E        +   
Sbjct: 64  -VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDL 122

Query: 443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI 502
            +  + FS   K +   T  +D+ I++WD          +GH   +Y        +   +
Sbjct: 123 YIRSVCFSPDGKFL--ATGAEDRLIRIWDIENRKIVMILQGHEQDIY--SLDYFPSGDKL 178

Query: 503 FSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
            S S D  ++ W   +    +         T      +G+ + +    +    +  E   
Sbjct: 179 VSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF 238

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
               +    +      +SV  V F      +++   D  +K+W++      +        
Sbjct: 239 LVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSG 298

Query: 623 PENP----------RICFNKNGTLLAVIANENRIKILETPESNSV 657
                          +   +N   +   + +  +   +    N +
Sbjct: 299 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.3 bits (95), Expect = 5e-04
 Identities = 45/286 (15%), Positives = 95/286 (33%), Gaps = 20/286 (6%)

Query: 782  LYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMP 841
            LY P    +  V      +    V C   S +  YL +       +Y V     +  +  
Sbjct: 42   LYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVARLSD 101

Query: 842  PSPTA------------------TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
             S                      S+ F+P D   +A G +D  I I++  + +++  L+
Sbjct: 102  DSAANKDPENLNTSSSPSSDLYIRSVCFSP-DGKFLATGAEDRLIRIWDIENRKIVMILQ 160

Query: 884  GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQ 943
            GH + +  L +  + + LVS  GD  + +WD+         S++     + ++P +    
Sbjct: 161  GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYI 220

Query: 944  FHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLS 1003
                  R + V ++    +  E L    +        +    F+ D + V +  +D ++ 
Sbjct: 221  AAGSLDRAVRVWDSE-TGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK 279

Query: 1004 IHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAA 1049
            +    N   +    +        ++     F            I +
Sbjct: 280  LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILS 325

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 30/232 (12%), Positives = 57/232 (24%), Gaps = 18/232 (7%)

Query: 841  PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVIS----KLEGHSKRVTGLVFSD 896
             P P    L  +            +   ++YN      I     K   H+  V  + FS+
Sbjct: 14   KPIPPF-LLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSN 72

Query: 897  ALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE 956
                L + G +    V+ V    +    S  +         + +         R +    
Sbjct: 73   DGEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSP 131

Query: 957  THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRI 1016
                +    E   ++ W   +   +               F  G   +  + +  V+   
Sbjct: 132  DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWD 191

Query: 1017 LSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYV 1068
            L T                    +      +A  P      A G  +  V V
Sbjct: 192  LRTG------------QCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRV 231

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.1 bits (167), Expect = 7e-13
 Identities = 28/193 (14%), Positives = 64/193 (33%), Gaps = 5/193 (2%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSS--EVISKLEGHSKRVTGLVFSDALNILVSS 904
            +  A+N  D   IAI  ++  + IY    +    + +L+ H+ +VTG+ ++   N +V+ 
Sbjct: 11   SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69

Query: 905  GGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEA 964
            G D   +VW + G   +    +   +          + +     +       +     + 
Sbjct: 70   GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGS--RVISICYFEQE 127

Query: 965  EELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRP 1024
             +    K         +    +  +  ++     D    I  A   EV+ R   T +   
Sbjct: 128  NDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSK 187

Query: 1025 TTSHDKILCFCYC 1037
                + +      
Sbjct: 188  MPFGELMFESSSS 200

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.3 bits (157), Expect = 1e-11
 Identities = 38/257 (14%), Positives = 73/257 (28%), Gaps = 20/257 (7%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            ++   W+ D + + +  + H V +Y   G     Q  E+  H G V  + ++    +I 
Sbjct: 9   PISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-WVQVHELKEHNGQVTGVDWAPDSNRI- 66

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            +TCG D+   VW     +   +         + C     N       S    I    ++
Sbjct: 67  -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125

Query: 518 SLGARVDYDAPGLGCTRMAYSANGR---------------RLFSCGTSKEGESFLVEWNE 562
                               S +                 R+FS    +  E        
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
           S+                V  V F     ++     D  + + D +K   + T+ +    
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL- 244

Query: 623 PENPRICFNKNGTLLAV 639
                + F    +L+A 
Sbjct: 245 -PLLAVTFITESSLVAA 260

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 35/284 (12%), Positives = 75/284 (26%), Gaps = 25/284 (8%)

Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVW----DIGACSMLFKTAL 391
                           VG+      +         ++           + +      + L
Sbjct: 96  RAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 155

Query: 392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSA 451
           +          ++S     +     +                  E  +  G V+ + FSA
Sbjct: 156 LAAGSCDFKCRIFSAYIKEV----EERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSA 211

Query: 452 PCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
              ++       D T+ + DA       +      P+ ++    + ++    +   D   
Sbjct: 212 NGSRV--AWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSL---VAAGHDCFP 266

Query: 512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTY 571
             + YDS   ++ +        + +      R       K+  S        EG+     
Sbjct: 267 VLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASS--------EGSAAAGA 318

Query: 572 QGLQLQHNSVSVVHF----DTAKDQILAAGDDHVIKIWDMNKVQ 611
               L  NSVS +           Q    G D  + IWD+  ++
Sbjct: 319 GLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 362

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.2 bits (97), Expect = 3e-04
 Identities = 11/114 (9%), Positives = 29/114 (25%), Gaps = 6/114 (5%)

Query: 807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS 866
                   + + +       L+   +    L+           +            +D  
Sbjct: 248 AVTFITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKK 307

Query: 867 TILIYNARSSEVISKLEGHSKRVTGLVFS----DALNILVSSGGDAQIFVWDVD 916
                +A +   +     H   V+ +          +   ++G D  + +WDV 
Sbjct: 308 ASSEGSAAAGAGL--DSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVR 359

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 11/53 (20%), Positives = 19/53 (35%), Gaps = 2/53 (3%)

Query: 428 GSDARQQLEIDAHVGNVNDLAFSAPCKQIS--VITCGDDKTIKVWDAVTGSRT 478
           GS A        H  +V+ ++  +  K       T G D  + +WD  +    
Sbjct: 312 GSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 65.3 bits (157), Expect = 1e-11
 Identities = 48/365 (13%), Positives = 111/365 (30%), Gaps = 32/365 (8%)

Query: 568 KRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
           + T +G    H +  ++ + F+   + ++   DD +I+++D    + L  +    G    
Sbjct: 5   RTTLRG----HMTSVITCLQFE--DNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWA 58

Query: 626 PRICFNKNGTLLAV-IANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIA 684
             + +   G L++       R+  ++      V      +     +           G  
Sbjct: 59  --LKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116

Query: 685 NGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNN 744
           + ++ V + PKE   P+         E + PL     E     +          R    +
Sbjct: 117 DNTLHVWKLPKESSVPDHG------EEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGH 170

Query: 745 GGQAIFALASNGVHLMW-RWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT------ 797
           G   +     N + +      +    LS              R        DTT      
Sbjct: 171 GNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDL 230

Query: 798 -----DSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFN 852
                    Q       L +       ++    S+                   +++   
Sbjct: 231 ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTF 290

Query: 853 PHDNNVIAIGMDDSTILIYNARSSEVI-SKLEGHSKRVTGLVFSDALNILVSSGGDAQIF 911
              +N++  G ++    IYN RS +++ + +   + ++  + F     ++ +   D Q F
Sbjct: 291 YVSDNILVSGSEN-QFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSF 348

Query: 912 VWDVD 916
           +  +D
Sbjct: 349 LEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 4e-09
 Identities = 10/79 (12%), Positives = 29/79 (36%), Gaps = 6/79 (7%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKEN 498
           H  N++ +        I  +  G +    +++  +G   ++        ++S+    K  
Sbjct: 280 HHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-- 335

Query: 499 IHFIFSISVDGKIKAWLYD 517
              + ++  DG+    + D
Sbjct: 336 -TLVAAVEKDGQSFLEILD 353

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.5 bits (116), Expect = 1e-06
 Identities = 32/204 (15%), Positives = 61/204 (29%), Gaps = 9/204 (4%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
            T L F   ++N +  G DD  I +Y++ + + + +L GH   V  L ++    ILVS   
Sbjct: 17   TCLQF---EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGST 72

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFH----KDQT-RFLLVHETHLAI 961
            D  + VWD+                         +I++     +D T     + +     
Sbjct: 73   DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVP 132

Query: 962  YEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAY 1021
               EE      +      P            V T    G + +  + +  +    ++   
Sbjct: 133  DHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMK 192

Query: 1022 LRPTTSHDKILCFCYCSCLHVYPH 1045
                 S      +           
Sbjct: 193  CLYILSGHTDRIYSTIYDHERKRC 216

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.4 bits (113), Expect = 3e-06
 Identities = 23/151 (15%), Positives = 50/151 (33%), Gaps = 8/151 (5%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
           VIT  DDK I+V+D++         GH   V++L      +   + S S D  ++ W   
Sbjct: 26  VITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA---HGGILVSGSTDRTVRVWDIK 82

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
                  ++        +         +    S++    +  W   + +    +     +
Sbjct: 83  KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHV--WKLPKESSVPDHGE---E 137

Query: 578 HNSVSVVHFDTAKDQILAAGDDHVIKIWDMN 608
           H+   V H        +     H+  +  ++
Sbjct: 138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS 168

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.5 bits (90), Expect = 0.002
 Identities = 42/323 (13%), Positives = 88/323 (27%), Gaps = 22/323 (6%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLF 387
             L        ++ +      L+   T+                             + +
Sbjct: 47  LQLSGHDGGVWALKYAH-GGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEY 105

Query: 388 KTALVRDPGVSVNRV-VWS-PDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVN 445
           K       G   N + VW  P  S +     +H   L  +    +      +  H+ +V 
Sbjct: 106 KNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVR 165

Query: 446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI 505
                       V++   D T+ VWD       Y   GH   +Y              S 
Sbjct: 166 T----VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHERKRCISA 219

Query: 506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
           S+D  I+ W           +   +   +   +  G    S        +          
Sbjct: 220 SMDTTIRIWDL--------ENGELMYTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDAN 271

Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPEN 625
              R +       ++++  +     D IL +G ++   I+++   +L+            
Sbjct: 272 DYSRKFSYHHTNLSAITTFYVS---DNILVSGSENQFNIYNLRSGKLVHANILKDADQIW 328

Query: 626 PRICFNKNGTLLAVIANENRIKI 648
             + F    TL+A +  + +  +
Sbjct: 329 -SVNFK-GKTLVAAVEKDGQSFL 349

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 60.9 bits (146), Expect = 3e-10
 Identities = 36/361 (9%), Positives = 85/361 (23%), Gaps = 29/361 (8%)

Query: 586 FDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE- 643
                + ++     + + + D+    +  +          P       +     V+ N  
Sbjct: 4   LKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNNHY 61

Query: 644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG----IANGSVSVNEDPKEDVK 699
             I  ++     +   A + S             ++  G              D      
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 700 PEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHL 759
           P + V +       KP+   P   Q  L+ +                       +     
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRA---------------ADDGSLYVAGPDIY 166

Query: 760 MWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFS 819
                    T++             P     +         S                 +
Sbjct: 167 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATA 226

Query: 820 ASGGVISLYIVMTFKTILTIMPP-SPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV 878
                     + T KT        +    +   +P D N I      + +  Y+ +  ++
Sbjct: 227 DLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY--GVLNRLAKYDLKQRKL 284

Query: 879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPS 938
           I            + F    + L   G    + V++ D    +  ++++ P G M+    
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL--EKVKNIKLPGGDMSTTTP 341

Query: 939 E 939
           +
Sbjct: 342 Q 342

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 54.4 bits (129), Expect = 4e-08
 Identities = 35/319 (10%), Positives = 76/319 (23%), Gaps = 34/319 (10%)

Query: 324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGAC 383
                 ++     P +    P   T  ++  + GD    D+++ +  F  N         
Sbjct: 29  TVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGE-- 86

Query: 384 SMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA-----------R 432
                       G S+     SPDG  +    +        Y                  
Sbjct: 87  -----------VGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEA 135

Query: 433 QQLEIDAHVGNVNDLAFSAPCKQI------SVITCGDDKTIKVWDAVTGSRTYSFEGHGA 486
           + +        V  +  +              +     K          +R         
Sbjct: 136 KPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVL 195

Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFS 546
             +       E              +      L           G T     A+   L+ 
Sbjct: 196 YFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYF 255

Query: 547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQ----HNSVSVVHFDTAKDQILAAGDDHVI 602
            G     +   +    +  A     Q   ++     ++   V FD   D++   G  + +
Sbjct: 256 TGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDL 315

Query: 603 KIWDMNKVQLLTTIDAGGG 621
            +++ + ++ +  I   GG
Sbjct: 316 AVFNPDTLEKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 39.0 bits (89), Expect = 0.003
 Identities = 13/167 (7%), Positives = 40/167 (23%), Gaps = 18/167 (10%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNF---------KVWDIG 381
           +   +        P         +   +  +    +  K   ++             D+ 
Sbjct: 179 LPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238

Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
                 +     D        + SP      +    + +  Y         + ++     
Sbjct: 239 TGKTHTQE--FADLTELYFTGLRSPKDPNQ-IYGVLNRLAKYDLKQR----KLIKAANLD 291

Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
                +AF     +  +   G    + V++  T  +  + +  G  +
Sbjct: 292 HTYYCVAFDKKGDK--LYLGGTFNDLAVFNPDTLEKVKNIKLPGGDM 336

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 38.6 bits (88), Expect = 0.004
 Identities = 20/186 (10%), Positives = 43/186 (23%), Gaps = 14/186 (7%)

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
            A  A  + +  I       + V D  + +   S          +          ++   
Sbjct: 2   PALKAGHEYM--IVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYV-LN 58

Query: 506 SVDGKIKAW------LYDSLGARVDYDAPGLGCTRMAYSANGRRLF--SCGTSKEGESFL 557
           +  G I                       G      A S +G+ ++     T +  + ++
Sbjct: 59  NHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYV 118

Query: 558 VEWNESEGAIKRTYQGLQL--QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT 615
           V+    E          +          V+   A D          I   D+   +    
Sbjct: 119 VKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVA 178

Query: 616 IDAGGG 621
           +     
Sbjct: 179 LPLRNW 184

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.6 bits (145), Expect = 4e-10
 Identities = 46/369 (12%), Positives = 116/369 (31%), Gaps = 42/369 (11%)

Query: 560 WNESEGAIKRTYQGLQLQHNS--VSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
           W   E    +  +G    H+   ++ + F    ++I++  DD+ +K+W     + L T+ 
Sbjct: 1   WRRGELKSPKVLKG----HDDHVITCLQFC--GNRIVSGSDDNTLKVWSAVTGKCLRTLV 54

Query: 618 AGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPIST 677
                             ++   + +  +K+        +      +  +R + ++    
Sbjct: 55  G----HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV 110

Query: 678 VTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKI 737
           V+G+  A   V   E  +        V A    + +       +    +           
Sbjct: 111 VSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMV----------- 159

Query: 738 SRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTT 797
            ++        +  L  +   +          +S    T +  R++    G         
Sbjct: 160 -KVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSI--RVWDVETGNCIHTLTGH 216

Query: 798 DSNSQEAVPCFALSKNDAYLFSA-SGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDN 856
            S          +   D  L S  +   + ++ + T + + T+  P+   +++     + 
Sbjct: 217 QS------LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNK 270

Query: 857 NVIAIGMDDSTILIYNARSSEVISKL-----EGHSKRVTGLVFSDALNILVSSGGD---- 907
           N +    DD T+ +++ ++ E I  L      G    V  +  S+   +      +    
Sbjct: 271 NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330

Query: 908 AQIFVWDVD 916
            ++ V D D
Sbjct: 331 TKLLVLDFD 339

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 55/309 (17%), Positives = 108/309 (34%), Gaps = 31/309 (10%)

Query: 348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD 407
             ++ G++     +W   +G+   +R       G  S   +  ++          VW+ +
Sbjct: 28  NRIVSGSDDNTLKVWSAVTGK--CLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNAE 85

Query: 408 GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS---------- 457
                     H   +   H           DA +   +          +           
Sbjct: 86  TGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY 145

Query: 458 ----VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKA 513
               V++   D  +KVWD  T +  ++ +GH   VYSL          + S S+D  I+ 
Sbjct: 146 DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI----HVVSGSLDTSIRV 201

Query: 514 WLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQG 573
           W  ++      +   G              L S       +S +  W+   G   +T QG
Sbjct: 202 WDVET--GNCIHTLTGHQSLTSGMELKDNILVSG----NADSTVKIWDIKTGQCLQTLQG 255

Query: 574 LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---VQLLTTIDAGGGLPENPRICF 630
                ++V+ + F+  K+ ++ + DD  +K+WD+     ++ L T+++GG      RI  
Sbjct: 256 PNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA 313

Query: 631 NKNGTLLAV 639
           +    + AV
Sbjct: 314 SNTKLVCAV 322

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.1 bits (136), Expect = 4e-09
 Identities = 33/245 (13%), Positives = 69/245 (28%), Gaps = 32/245 (13%)

Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
            + +    +  H  +V        C    +++  DD T+KVW AVTG    +  GH   V
Sbjct: 4   GELKSPKVLKGHDDHVIT-CLQ-FCGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV 60

Query: 489 YSLC-----PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRR 543
           +S         +      +   + +            + V                   R
Sbjct: 61  WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLR 120

Query: 544 LFSCGTSKEGESF---------------LVEWNESEGAIK-----RTYQGLQLQHNSVSV 583
           ++   T +                     V     +  +K            LQ ++  V
Sbjct: 121 VWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRV 180

Query: 584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE 643
                    +++   D  I++WD+     + T+       ++          +L     +
Sbjct: 181 YSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG----HQSLTSGMELKDNILVSGNAD 236

Query: 644 NRIKI 648
           + +KI
Sbjct: 237 STVKI 241

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.0 bits (115), Expect = 2e-06
 Identities = 25/158 (15%), Positives = 50/158 (31%), Gaps = 13/158 (8%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
           V++   D +I+VWD  TG+  ++  GH +    +        + + S + D  +K W   
Sbjct: 190 VVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKD----NILVSGNADSTVKIWDIK 245

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQ 577
           +         P    + +      +       S +G   L  W+   G   R    L+  
Sbjct: 246 TGQCLQTLQGPNKHQSAVTCLQFNKNFVITS-SDDGTVKL--WDLKTGEFIRNLVTLESG 302

Query: 578 H--NSVSVVHFDTAKDQILAAGDDH----VIKIWDMNK 609
                V  +     K        +      + + D + 
Sbjct: 303 GSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 340

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 34/266 (12%), Positives = 74/266 (27%), Gaps = 30/266 (11%)

Query: 854  HDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVW 913
               N I  G DD+T+ +++A + + +  L GH+  V      D  NI++S   D  + VW
Sbjct: 25   FCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD--NIIISGSTDRTLKVW 82

Query: 914  DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQW 973
            + +           T          +  +   +D T  +   E              +  
Sbjct: 83   NAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIE------------TGQCL 130

Query: 974  FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHD---- 1029
              +     +      D R V +   D  + + +         +        +   D    
Sbjct: 131  HVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHV 190

Query: 1030 ---------KILCFCYCSCLHVYPH---AIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDT 1077
                     ++      +C+H         +   LK      G  +  V + +       
Sbjct: 191  VSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCL 250

Query: 1078 WAVLPPDEIVGDQPTSTSEGDRAMDG 1103
              +  P++            +  +  
Sbjct: 251  QTLQGPNKHQSAVTCLQFNKNFVITS 276

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (90), Expect = 0.002
 Identities = 26/193 (13%), Positives = 52/193 (26%), Gaps = 9/193 (4%)

Query: 882  LEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETH 941
            L+GH   V   +     N +VS   D  + VW       +  R+L    G +  +    +
Sbjct: 12   LKGHDDHVITCLQFCG-NRIVSGSDDNTLKVWSAVTG--KCLRTLVGHTGGVWSSQMRDN 68

Query: 942  IQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGT 1001
            I       R L V                     +        + S D  +       G 
Sbjct: 69   IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQ 128

Query: 1002 LSIHEASNLEVQCRILSTAYLRPTTSHDKILCFC---YCSCLHVY---PHAIAAHPLKPT 1055
                   ++     +        + ++D ++        +CLH      + + +      
Sbjct: 129  CLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGI 188

Query: 1056 QFAVGLTNGEVYV 1068
                G  +  + V
Sbjct: 189  HVVSGSLDTSIRV 201

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.6 bits (137), Expect = 2e-09
 Identities = 45/304 (14%), Positives = 83/304 (27%), Gaps = 44/304 (14%)

Query: 328 QTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL----------------- 370
               E S     + +       ++ G       +WD N+ +                   
Sbjct: 9   HCRSETSKGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDE 65

Query: 371 --FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG 428
              I       +    +     L          +    +  ++        + ++     
Sbjct: 66  RVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASP 125

Query: 429 SDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
           +D   +  +  H   VN + F          +   D+TIKVW+  T     +  GH   +
Sbjct: 126 TDITLRRVLVGHRAAVNVVDFDDKYIV----SASGDRTIKVWNTSTCEFVRTLNGHKRGI 181

Query: 489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG 548
             L          + S S D  I+ W  D           G          + +R+ S  
Sbjct: 182 ACLQYRD----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSGA 235

Query: 549 TSKEGESFLVEWNESEGAIKRTYQGLQLQH------NSVSVVHFDTAKDQILAAGDDHVI 602
              +    +  W+       R   G             V  + FD  + QI+++  D  I
Sbjct: 236 YDGK----IKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTI 289

Query: 603 KIWD 606
            IWD
Sbjct: 290 LIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (126), Expect = 7e-08
 Identities = 32/209 (15%), Positives = 61/209 (29%), Gaps = 20/209 (9%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENI 499
               V  L +        +++   D TIK+WD  T        GH   V  L    +  I
Sbjct: 14  TSKGVYCLQYDDQ----KIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII 69

Query: 500 HFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVE 559
                 +V                  +A               +  S             
Sbjct: 70  TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAV---------- 119

Query: 560 WNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAG 619
           W+ +            L  +  +V   D     I++A  D  IK+W+ +  + + T++  
Sbjct: 120 WDMAS--PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG- 176

Query: 620 GGLPENPRICFNKNGTLLAVIANENRIKI 648
               +    C      L+   +++N I++
Sbjct: 177 ---HKRGIACLQYRDRLVVSGSSDNTIRL 202

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (109), Expect = 8e-06
 Identities = 26/119 (21%), Positives = 40/119 (33%), Gaps = 15/119 (12%)

Query: 806 PCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD 864
               L   D  + S S    I L+ +     +  +               DN  I  G  
Sbjct: 180 GIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVR---CIRFDNKRIVSGAY 236

Query: 865 DSTILIYNARSSE---------VISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD 914
           D  I +++  ++           +  L  HS RV  L F +    +VSS  D  I +WD
Sbjct: 237 DGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDE--FQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-04
 Identities = 29/238 (12%), Positives = 67/238 (28%), Gaps = 30/238 (12%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
              L +   D+  I  G+ D+TI I++  + E    L GH+  V  L + + + I      
Sbjct: 19   YCLQY---DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII------ 69

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE 966
                     D        +       +             +        +  +A+++   
Sbjct: 70   -----TGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMAS 124

Query: 967  LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTT 1026
             T +     +     +      D + + ++  D T+ +   S  E    +          
Sbjct: 125  PTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACL 184

Query: 1027 SHD-------------KILCFCYCSCLHVYP---HAIAAHPLKPTQFAVGLTNGEVYV 1068
             +              ++      +CL V       +        +   G  +G++ V
Sbjct: 185  QYRDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 242

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 57.2 bits (136), Expect = 3e-09
 Identities = 32/322 (9%), Positives = 84/322 (26%), Gaps = 25/322 (7%)

Query: 335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRD 394
           +    + + P  + +                 G+  F+R     D G   +         
Sbjct: 18  NFTTHLSYDPTTNAIA-------------YPCGKSAFVR---CLDDGDSKVPPVVQFTGH 61

Query: 395 PGVSVNRVVWSP--DGSLLGVAYSKHIVQLYAYHGGSDARQQL-----EIDAHVGNVNDL 447
               V  V +SP      L        V ++ +    ++         E     G ++D+
Sbjct: 62  GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISV 507
           ++    +++ V+  G D         +G+      GH   + +        +  +     
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181

Query: 508 DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI 567
              +         +  D      G        +         +   +  +  ++   G  
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDS-GEFVITVGSDRKISCFDGKSGEF 240

Query: 568 KRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
            +  +  Q                +    G D  I++WD+   + +           N +
Sbjct: 241 LKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300

Query: 628 ICFNKNGT-LLAVIANENRIKI 648
           +     G   +  ++ +  +  
Sbjct: 301 VGVVATGNGRIISLSLDGTLNF 322

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 5e-07
 Identities = 35/221 (15%), Positives = 59/221 (26%), Gaps = 10/221 (4%)

Query: 835  TILTIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV--ISKLEGH-S 886
            ++  I+PP P       T L+++P  N +       + +   +   S+V  + +  GH S
Sbjct: 4    SLKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS 63

Query: 887  KRVTGLVFSDALN--ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQF 944
              VT + FS       L S     ++ VW            +        LA   + I +
Sbjct: 64   SVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW 123

Query: 945  HKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004
              +  R  +V E                   +S                  S   G    
Sbjct: 124  DFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGS 183

Query: 1005 HEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPH 1045
                         S        S  + + F   S   V   
Sbjct: 184  VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITV 224

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 49.1 bits (115), Expect = 1e-06
 Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)

Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
             T G D TI+VWD  T    + ++ +        +   A  N   I S+S+DG +  +
Sbjct: 266 FATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGN-GRIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 10/67 (14%), Positives = 29/67 (43%), Gaps = 3/67 (4%)

Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL---VFSDALNILVSSGGDA 908
           +  D+   A    D+TI +++  +S+ + K     +++      V +     ++S   D 
Sbjct: 259 SWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDG 318

Query: 909 QIFVWDV 915
            +  +++
Sbjct: 319 TLNFYEL 325

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.0 bits (133), Expect = 1e-08
 Identities = 17/117 (14%), Positives = 37/117 (31%), Gaps = 9/117 (7%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            +  + + P G       +  +          +   + ++  H   V  L F+   K   
Sbjct: 226 QIFSLGYCPTGEW----LAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWF- 280

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
            ++ G D  +  W    G+  +      + V S      +   +I + S D K   +
Sbjct: 281 -VSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDK--YIVTGSGDKKATVY 333

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.6 bits (132), Expect = 1e-08
 Identities = 13/68 (19%), Positives = 22/68 (32%), Gaps = 2/68 (2%)

Query: 848 SLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD 907
           SL F             D+ +  +       I +    S  V     S     +V+  GD
Sbjct: 270 SLKFAY-CGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGD 327

Query: 908 AQIFVWDV 915
            +  V++V
Sbjct: 328 KKATVYEV 335

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 31/275 (11%), Positives = 73/275 (26%), Gaps = 19/275 (6%)

Query: 376 KVWDIGACSMLFKTALVRDPGVS--VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQ 433
           KVWDI         + +        +      PDG  L V      + ++     +   +
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 434 QLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
                +                 S  + G+     + +     +T   +  G    + C 
Sbjct: 135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHN-----QTLVRQFQGHTDGASCI 189

Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
               +   +++  +D  +++W          +D        + Y   G  L     S   
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTS-QIFSLGYCPTGEWLAVGMESSNV 248

Query: 554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL 613
           E   V               L L  + V  + F       ++ G D+++  W       +
Sbjct: 249 EVLHVNKP--------DKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI 300

Query: 614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
                   +        + +   +   + + +  +
Sbjct: 301 FQSKESSSV---LSCDISVDDKYIVTGSGDKKATV 332

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 10/70 (14%), Positives = 22/70 (31%), Gaps = 6/70 (8%)

Query: 402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC 461
           + ++  G         +++  +    G      +       +V     S   K I  +T 
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYG----ASIFQSKESSSVLSCDISVDDKYI--VTG 324

Query: 462 GDDKTIKVWD 471
             DK   V++
Sbjct: 325 SGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 2e-05
 Identities = 15/93 (16%), Positives = 26/93 (27%), Gaps = 11/93 (11%)

Query: 405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD 464
           + DG +  V +    +      G     +Q+    H   V  +  S P + +     G  
Sbjct: 18  TADGQMQPVPFPPDAL---IGPGIPRHARQINTLNHGEVVCAVTISNPTRHVY---TGGK 71

Query: 465 KTIKVWDAVTGS-----RTYSFEGHGAPVYSLC 492
             +KVWD                     + S  
Sbjct: 72  GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCK 104

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.1 bits (97), Expect = 3e-04
 Identities = 22/215 (10%), Positives = 53/215 (24%), Gaps = 5/215 (2%)

Query: 864  DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTC 923
             D+ I     R +  I+ L  H + V  +  S+    + + GG   + VWD+   G ++ 
Sbjct: 30   PDALIGPGIPRHARQINTL-NHGEVVCAVTISNPTRHVYT-GGKGCVKVWDISHPGNKSP 87

Query: 924  RSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQ 983
             S                 +   D    ++  E              +    ++S   + 
Sbjct: 88   VSQLDCLNRDNYI---RSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144

Query: 984  ATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVY 1043
               +               +I                +    +  D            + 
Sbjct: 145  YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204

Query: 1044 PHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1078
                +    +  Q        +++ +     G+  
Sbjct: 205  NTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWL 239

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 8/75 (10%)

Query: 532 CTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD 591
              + ++  G+   S G        L  W    GA     +      +SV          
Sbjct: 268 VLSLKFAYCGKWFVSTGKDN----LLNAWRTPYGASIFQSKE----SSSVLSCDISVDDK 319

Query: 592 QILAAGDDHVIKIWD 606
            I+    D    +++
Sbjct: 320 YIVTGSGDKKATVYE 334

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.0 bits (130), Expect = 2e-08
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGHSKRVTGLVFSDAL 898
           +   P          + +++A G  D+ I IY+ +   ++I  L  H   V  L++    
Sbjct: 211 ISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP- 269

Query: 899 NILVSSGGDAQIFVWDV 915
           + LVSSG DA I  W+V
Sbjct: 270 STLVSSGADACIKRWNV 286

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK 496
           I  H   +  L  +       +I+   D  I  W + +       + H   + SL     
Sbjct: 9   ISGHNKGITALTVN------PLISGSYDGRIMEWSSSSM-----HQDHSNLIVSLDNSKA 57

Query: 497 ENIHFIFS 504
           +    I  
Sbjct: 58  QEYSSISW 65

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 4e-05
 Identities = 11/57 (19%), Positives = 16/57 (28%), Gaps = 4/57 (7%)

Query: 459 ITCGDDKTIKVWDAVTGSRTYS-FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAW 514
            T   D  I ++      +       H   V +L          + S   D  IK W
Sbjct: 231 ATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETP---STLVSSGADACIKRW 284

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 437 IDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV 473
           ++AH   VN+L +  P     +++ G D  IK W+ V
Sbjct: 254 LNAHKDGVNNLLWETPST---LVSSGADACIKRWNVV 287

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 12/40 (30%), Positives = 19/40 (47%), Gaps = 4/40 (10%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVD 916
           EV+  + GH+K +T L  +     L+S   D +I  W   
Sbjct: 4   EVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSS 39

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.6 bits (90), Expect = 0.002
 Identities = 22/248 (8%), Positives = 57/248 (22%), Gaps = 23/248 (9%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGG 906
            T+L  NP     +  G  D  I+ +++ S       + HS  +  L  S A      S  
Sbjct: 17   TALTVNP-----LISGSYDGRIMEWSSSSMH-----QDHSNLIVSLDNSKAQEYSSISWD 66

Query: 907  DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIY 962
            D                +     +   T   +              ++      +  +  
Sbjct: 67   DTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSAV 126

Query: 963  EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYL 1022
               +          +++ + + +       + T        I  + +            +
Sbjct: 127  SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKI 186

Query: 1023 RPTTSHDKILCFCYCSCLHVYP---------HAIAAHPLKPTQFAVGLTNGEVYVIEPNE 1073
                   + +     +                      ++    A G  +  +++     
Sbjct: 187  LLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 246

Query: 1074 PGDTWAVL 1081
            P      L
Sbjct: 247  PMKIIKAL 254

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 54.0 bits (128), Expect = 4e-08
 Identities = 37/329 (11%), Positives = 82/329 (24%), Gaps = 22/329 (6%)

Query: 590 KDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE-NRIKI 648
           +D ILA      + + D  K+ +   I      P          G +     N+   +  
Sbjct: 1   RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60

Query: 649 LETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN 708
           ++                   L    +ST      +    +++ D K     E  V  E 
Sbjct: 61  IDL-------------VTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLEL 107

Query: 709 KSEV-EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND 767
                +    A           +     +I+ L +   G     L   G  L    P   
Sbjct: 108 THFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSK---LYGLGRDLHVMDPEAG 164

Query: 768 LTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISL 827
             +  +         Y             +               + A   +   G++++
Sbjct: 165 TLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTM 224

Query: 828 YIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK 887
            +      +  +        S A NP            + +  ++   +  I ++     
Sbjct: 225 DLETGEMAMREVRIMDVFYFSTAVNPAKT---RAFGAYNVLESFDLEKNASIKRVP-LPH 280

Query: 888 RVTGLVFSDALNILVSSGGDAQIFVWDVD 916
               +  S   + +   G    +  +D +
Sbjct: 281 SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 51.7 bits (122), Expect = 2e-07
 Identities = 26/300 (8%), Positives = 75/300 (25%), Gaps = 29/300 (9%)

Query: 376 KVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA--YSKHIVQLYAYHGGSDARQ 433
            V D    ++  K   + D G +    + +P G +       S+ +V++    G +  R 
Sbjct: 14  VVIDTEKMAVD-KVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRI 72

Query: 434 QLEIDAHVGNV-NDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC 492
            L             A S   K +++        +  ++              +   +  
Sbjct: 73  DLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFE 132

Query: 493 PHAK-------ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLF 545
              +        +   ++ +  D  +      +L       +                  
Sbjct: 133 APRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQH 192

Query: 546 SCGTSKEGESFLVEWNESEGAIKRTYQGL-------------QLQHNSVSVVHFDTAKDQ 592
                     +    +           GL             +++   V          +
Sbjct: 193 ESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 593 ILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANENRIKILET 651
             A G  +V++ +D+ K   +  +            +  + +G+ + +      +   + 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRVPLPHS----YYSVNVSTDGSTVWLGGALGDLAAYDA 308

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 44.0 bits (102), Expect = 6e-05
 Identities = 33/314 (10%), Positives = 79/314 (25%), Gaps = 40/314 (12%)

Query: 329 TLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFK 388
           T+ +   +PM     P                  D+ +G+ L   +              
Sbjct: 28  TIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTP---------- 77

Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGG--------SDARQQLEIDAH 440
                +   S+     SPDG  L +  S   ++L  +           ++   + +    
Sbjct: 78  ----EERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133

Query: 441 VGNVNDLAFS-------APCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCP 493
              +  LA++          + + V+       ++     +       +     V++   
Sbjct: 134 PRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHE 193

Query: 494 HAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG 553
            +       ++   D           G     D                  FS   +   
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLT-MDLETGEMAMREVRIMDVFYFSTAVNPAK 252

Query: 554 ------ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM 607
                  + L  ++  + A  +         +S   V+  T    +   G    +  +D 
Sbjct: 253 TRAFGAYNVLESFDLEKNASIKRV----PLPHSYYSVNVSTDGSTVWLGGALGDLAAYDA 308

Query: 608 NKVQLLTTIDAGGG 621
             ++    +D  G 
Sbjct: 309 ETLEKKGQVDLPGN 322

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 13/165 (7%), Positives = 40/165 (24%), Gaps = 12/165 (7%)

Query: 458 VITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWL 515
           ++       + V D    +  +  +    G                  +++    +    
Sbjct: 4   ILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGR-IAYATVNKSESLVKID 62

Query: 516 YDSLGARVDYDAP-----GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
             +       D              A S +G+ L    +    E    E   +  A+   
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDA 122

Query: 571 YQGLQL----QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
               +         ++++ +     ++   G D  +   +   + 
Sbjct: 123 ETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDLHVMDPEAGTLV 167

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 38.6 bits (88), Expect = 0.003
 Identities = 15/164 (9%), Positives = 44/164 (26%), Gaps = 9/164 (5%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTA 390
               S        P    +     + G        + + +   +   +  G  +M  +T 
Sbjct: 170 KPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETG 229

Query: 391 ---LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDL 447
              +     + V     + + +      + ++++ +           ++      +   +
Sbjct: 230 EMAMREVRIMDVFYFSTAVNPAKTRAFGAYNVLESFDLEKN----ASIKRVPLPHSYYSV 285

Query: 448 AFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
             S     +     G    +  +DA T  +    +  G    SL
Sbjct: 286 NVSTDGSTV--WLGGALGDLAAYDAETLEKKGQVDLPGNASMSL 327

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 53.0 bits (125), Expect = 7e-08
 Identities = 44/337 (13%), Positives = 84/337 (24%), Gaps = 32/337 (9%)

Query: 313 SFGETS-FSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLF 371
            F +T+ F   P+T          + + +   P    +     N        V S     
Sbjct: 2   EFSQTALFPSLPRTA-------RGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLTDTE 52

Query: 372 IRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA 431
           I                     +          SP G           V+++     +  
Sbjct: 53  I-------------------YTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHI 93

Query: 432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
            +   I    G V D        +         +            +       A   + 
Sbjct: 94  LKT-TIPVFSGPVKD-ISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK 551
                     I S S D  +  +       +  +         + Y+ +G    S G   
Sbjct: 152 VDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG 211

Query: 552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQ 611
               +        G  +           SV  + +     +I +A  D  IKIW++  ++
Sbjct: 212 TIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLK 271

Query: 612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKI 648
           +  TI  G  + E+ ++        L  I+    I  
Sbjct: 272 VEKTIPVGTRI-EDQQLGIIWTKQALVSISANGFINF 307

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (117), Expect = 8e-07
 Identities = 19/214 (8%), Positives = 38/214 (17%), Gaps = 7/214 (3%)

Query: 838  TIMPPSP-----TATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGL 892
             + P  P     TA  L   P   + I      S +      S         HS + T  
Sbjct: 7    ALFPSLPRTARGTAVVLGNTP-AGDKIQYCNGTS-VYTVPVGSLTDTEIYTEHSHQTTVA 64

Query: 893  VFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFL 952
              S +     S      + +WD          ++    G +     ++  +         
Sbjct: 65   KTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGR 124

Query: 953  LVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEV 1012
                             L       +    + +                           
Sbjct: 125  ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKST 184

Query: 1013 QCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHA 1046
                    +         +          V  + 
Sbjct: 185  FGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNG 218

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.1 bits (115), Expect = 2e-06
 Identities = 14/68 (20%), Positives = 28/68 (41%), Gaps = 5/68 (7%)

Query: 852 NPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK---RVTGLVFSDALNILVSSGGDA 908
              D   IA    D TI I+N  + +V   +   ++   +  G++++     LVS   + 
Sbjct: 246 WSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK--QALVSISANG 303

Query: 909 QIFVWDVD 916
            I   + +
Sbjct: 304 FINFVNPE 311

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 6e-06
 Identities = 12/60 (20%), Positives = 20/60 (33%), Gaps = 7/60 (11%)

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGA---PVYSLCPHAKENIHFIFSISVDGKIKAW 514
           + +   DKTIK+W+  T     +             +          + SIS +G I   
Sbjct: 253 IASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTK----QALVSISANGFINFV 308

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 52.3 bits (123), Expect = 1e-07
 Identities = 13/66 (19%), Positives = 25/66 (37%), Gaps = 3/66 (4%)

Query: 440 HVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF-EGHGAPVYSLCPHAKEN 498
           H   +  L+ SA  K +   +   +  I  WD  TG     F + H   +  +   +K +
Sbjct: 11  HNKAITALSSSADGKTL--FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68

Query: 499 IHFIFS 504
           +  +  
Sbjct: 69  LFTVSW 74

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 32/245 (13%), Positives = 69/245 (28%), Gaps = 17/245 (6%)

Query: 847  TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKL-EGHSKRVTGLVFSDALNILVSSG 905
            T+L+ +  D   +     +  I  ++  +        + H+  +TG+  +     L +  
Sbjct: 16   TALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK-GDLFTVS 73

Query: 906  GDAQIFVWDVDGWGIQTCRSLQ------------TPDGVMTLAPSETHIQFHKDQTRFLL 953
             D  + V    G G+ + +++             + DG + +A    HI  +       +
Sbjct: 74   WDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEV 133

Query: 954  VHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013
                + +                 S              V T      ++    SN    
Sbjct: 134  PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAF 193

Query: 1014 CRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKP--TQFAVGLTNGEVYVIEP 1071
                  +      S        + +    +   +A     P   + A G  +  V V   
Sbjct: 194  LVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNM 253

Query: 1072 NEPGD 1076
            N+P D
Sbjct: 254  NKPSD 258

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.8 bits (101), Expect = 7e-05
 Identities = 22/169 (13%), Positives = 41/169 (24%), Gaps = 4/169 (2%)

Query: 877  EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLA 936
             +     GH+K +T L  S     L S+  +  I  WD+                +  + 
Sbjct: 3    SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIK 62

Query: 937  PSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTS 996
             +     F       L V         +   +       +SS P+  A  +     V   
Sbjct: 63   TTSKGDLFTVSWDDHLKVVPAG----GSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118

Query: 997  FVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPH 1045
            +    +  H            S   L        +        ++    
Sbjct: 119  YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSG 167

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 2/67 (2%)

Query: 851 FNPHDNNVIAIGMDDSTILIYNAR--SSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA 908
               DN  +A G  D++++++N    S   I     H+      V       +VS+G D+
Sbjct: 231 SWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDS 290

Query: 909 QIFVWDV 915
            I  W+V
Sbjct: 291 NIKFWNV 297

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 6e-04
 Identities = 39/297 (13%), Positives = 80/297 (26%), Gaps = 18/297 (6%)

Query: 325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKL-------------- 370
           ++ Q     + +  ++         L      G    WD+++G                 
Sbjct: 3   SIDQVRYGHNKAITALSSSA-DGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGI 61

Query: 371 -FIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS 429
                  ++ +     L           S   V        LG+A S       A     
Sbjct: 62  KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKH 121

Query: 430 DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVY 489
            A         V    + +  A       +  G   +      ++G+     +    P  
Sbjct: 122 IAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAE 181

Query: 490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT 549
                   N  F+ +     K+  +   +       ++      ++A  +         T
Sbjct: 182 ITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241

Query: 550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD 606
                S +V WN ++ +            +SV+ V +      I++AG D  IK W+
Sbjct: 242 GSLDNSVIV-WNMNKPSDHPIIIKGAHAMSSVNSVIWLNET-TIVSAGQDSNIKFWN 296

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 52.5 bits (124), Expect = 1e-07
 Identities = 33/340 (9%), Positives = 85/340 (25%), Gaps = 22/340 (6%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPES 654
                    + D    +++  ID G      P      +G+ +A  A+    +I     +
Sbjct: 23  HFAAVTQQFVIDGEAGRVIGMIDGGFL----PNPVVADDGSFIAH-ASTVFSRIARGERT 77

Query: 655 NSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEK 714
           + V+    ++         P +     G      S+  D K  +  + S  A     V+ 
Sbjct: 78  DYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFS-PAPAVGVVDL 136

Query: 715 PLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEA 774
              A                   +   +   G                            
Sbjct: 137 EGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFL 196

Query: 775 TTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFK 834
                             +   T +     +     S +  +L +      +        
Sbjct: 197 INHP------AYSQKAGRLVWPTYTGKIHQIDLS--SGDAKFLPAVEALTEAERADGWRP 248

Query: 835 TILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVF 894
                +        +       +          +++ +A++ E ++K E     +  +  
Sbjct: 249 GGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINV 307

Query: 895 S--DALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGV 932
           S  +   +   S GD  +++ D      ++   L++ + +
Sbjct: 308 SQDEKPLLYALSTGDKTLYIHDA-----ESGEELRSVNQL 342

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 49.4 bits (116), Expect = 2e-06
 Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 13/142 (9%)

Query: 350 LLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGS 409
           L+  T  G     D++SG   F+   +       +                +V +     
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERA-------DGWRPGGWQQVAYHRALD 261

Query: 410 LLGVAYSKHIVQLYAYHGGS------DARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD 463
            + +   +     +               ++L        ++ +  S   K +       
Sbjct: 262 RIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTG 321

Query: 464 DKTIKVWDAVTGSRTYSFEGHG 485
           DKT+ + DA +G    S    G
Sbjct: 322 DKTLYIHDAESGEELRSVNQLG 343

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 40.9 bits (94), Expect = 7e-04
 Identities = 32/323 (9%), Positives = 72/323 (22%), Gaps = 48/323 (14%)

Query: 331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTG---------LWDVNSGQKLFIRNFKVWDIG 381
           I+G   P +         +    T               ++D  +               
Sbjct: 44  IDGGFLP-NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRF 102

Query: 382 ACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV 441
                     +   G ++    +SP  ++  V       +                    
Sbjct: 103 LVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIF------PT 156

Query: 442 GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHF 501
                            +  G + T ++           F  +                 
Sbjct: 157 APDTFFMHCRDGSLA-KVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-------KAGR 208

Query: 502 IFSISVDGKIKAWLYDSLGARVDYDAPGLG------------CTRMAYSANGRRLF---- 545
           +   +  GKI      S  A+       L               ++AY     R++    
Sbjct: 209 LVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD 268

Query: 546 --SCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF--DTAKDQILAAGDDHV 601
                  K    F+V  +   G     ++      + +  ++   D        +  D  
Sbjct: 269 QRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKT 324

Query: 602 IKIWDMNKVQLLTTIDAGGGLPE 624
           + I D    + L +++  G  P+
Sbjct: 325 LYIHDAESGEELRSVNQLGHGPQ 347

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 52.2 bits (123), Expect = 2e-07
 Identities = 12/92 (13%), Positives = 25/92 (27%), Gaps = 15/92 (16%)

Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-----------GHGA 486
            AH  ++  ++          ++C  D  +KVWD          +            H  
Sbjct: 11  KAHDADIFSVSACNS----FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHV 66

Query: 487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDS 518
            V          +  + + S  G +  +    
Sbjct: 67  DVLQAIERDAFELCLVATTSFSGDLLFYRITR 98

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 5e-07
 Identities = 43/393 (10%), Positives = 104/393 (26%), Gaps = 40/393 (10%)

Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--------- 629
             +  V         ++   D  +K+WD   +      D       +             
Sbjct: 15  ADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAI 72

Query: 630 --FNKNGTLLAVIANENRIKILETPESNSVD-----AAGVLSDNLRKLSVNPISTVTGAG 682
                   L+A  +    +        +           +L  +++K S   +       
Sbjct: 73  ERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASND 132

Query: 683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY 742
                  V  D K            ++S      ++   E Q  +      +   + +  
Sbjct: 133 RLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDI 192

Query: 743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP--RLYQPRHGPQFMVNDTTDSN 800
           +  G       +  V +        L       + +     +   +  PQ  +      +
Sbjct: 193 SERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDS 252

Query: 801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIA 860
           +         ++    + S S          + +  L     S    SL+FN      + 
Sbjct: 253 NSFGCITLYETEFGERIGSLSVP------THSSQASLGEFAHSSWVMSLSFNDS-GETLC 305

Query: 861 IGMDDSTILIYNARSSEVISKLEGHSKRV----TGLVFSDALNILVSSGGDAQIFVWDVD 916
               D  +  ++ ++ E I+ L  H   +      L   +  + L   G      V+DV 
Sbjct: 306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDVK 359

Query: 917 GW--GIQTCRSLQTPDGVMTLAPSETHIQFHKD 947
               G ++       + +  +    + I++ ++
Sbjct: 360 FLKKGWRSGMGADLNESLCCVCLDRS-IRWFRE 391

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 6e-06
 Identities = 33/320 (10%), Positives = 88/320 (27%), Gaps = 48/320 (15%)

Query: 361 LWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIV 420
           +WD         ++               + +    V       + +  L+        +
Sbjct: 38  VWDNKLLDNENPKDKSYSHFV------HKSGLHHVDVLQAIERDAFELCLVATTSFSGDL 91

Query: 421 QLYAYHGGSDAR-------QQLEIDAHVGNVNDLAFSAPCKQIS---VITCGDDKTIKVW 470
             Y      + +         L+ D    +   L + A   ++    ++      T  +W
Sbjct: 92  LFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIW 151

Query: 471 DA-VTGSRTYSFEGHGAPVYSLCPHAKENIH--------------FIFSISVDGKIKAWL 515
                   + S   + +P   L    +  +                I +   +G ++   
Sbjct: 152 KFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERGLIATGFNNGTVQISE 211

Query: 516 YDSLGARVDYD-----APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT 570
             +L    +++            R    +    L +          +  +    G    +
Sbjct: 212 LSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGS 271

Query: 571 YQG----------LQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDA-- 618
                             + V  + F+ + + + +AG D  ++ WD+   + +TT++   
Sbjct: 272 LSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331

Query: 619 GGGLPENPRICFNKNGTLLA 638
                E   +  +++G  LA
Sbjct: 332 DDIEIEEDILAVDEHGDSLA 351

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.7 bits (101), Expect = 1e-04
 Identities = 25/188 (13%), Positives = 56/188 (29%), Gaps = 4/188 (2%)

Query: 305 SLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDV 364
               E        S +   +   ++ +  S    S+D       L+  G N G   + ++
Sbjct: 155 PFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RGLIATGFNNGTVQISEL 212

Query: 365 NSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA 424
           ++ + L+    +   I   + +          +       +  G +              
Sbjct: 213 STLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSL 272

Query: 425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH 484
                 ++  L   AH   V  L+F+   + +   + G D  ++ WD  T  R  +   H
Sbjct: 273 SVPTHSSQASLGEFAHSSWVMSLSFNDSGETL--CSAGWDGKLRFWDVKTKERITTLNMH 330

Query: 485 GAPVYSLC 492
              +    
Sbjct: 331 CDDIEIEE 338

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 22/220 (10%), Positives = 56/220 (25%), Gaps = 27/220 (12%)

Query: 879  ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG-----IQTCRSLQTPDGVM 933
             +  + H   +  +   +  +  VS  GD  + VWD           ++        G+ 
Sbjct: 7    ANAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLH 64

Query: 934  TLAPSETHIQFHKDQTRFLLV---------------HETHLAIYEAEELTCLKQWFPISS 978
             +   +   +   +                          +   + + L    +     +
Sbjct: 65   HVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWA 124

Query: 979  VPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCS 1038
            +    +        +  + V GT  I +      +   L+  +         +      S
Sbjct: 125  LKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184

Query: 1039 CLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGDTW 1078
                +  ++          A G  NG V + E +     +
Sbjct: 185  Q---FATSVDISE--RGLIATGFNNGTVQISELSTLRPLY 219

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 51.0 bits (120), Expect = 4e-07
 Identities = 29/326 (8%), Positives = 77/326 (23%), Gaps = 39/326 (11%)

Query: 339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVS 398
            +   P +  LL           WD          +  V+     +              
Sbjct: 16  DIKIIPSKSLLL--------ITSWD---------GSLTVYKFDIQAKNVDLLQSLRYKHP 58

Query: 399 VNRVVWSPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
           +    +  +    + V   +  +      G    +     +A++G      +       +
Sbjct: 59  LLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAA 118

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
                 +               +   +   V +       N   +     + +++ +   
Sbjct: 119 SWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLP 178

Query: 518 SLG--------------ARVDYDAPGLGCTRMAYSANGR-RLFSCGTSKEGESFLVEWNE 562
                             R     P         S +GR  +       +  +    +  
Sbjct: 179 LCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAF 238

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGL 622
               +      L    NS+    F      +  AG D +I  W++   + +         
Sbjct: 239 RCHRLNLKDTNLAYPVNSIE---FSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-- 293

Query: 623 PENPRICFNKNGTLLAVIANENRIKI 648
            E+  +    +  +L +  +++  K 
Sbjct: 294 -EDSVVKIACSDNILCLATSDDTFKT 318

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 5e-06
 Identities = 21/265 (7%), Positives = 55/265 (20%), Gaps = 14/265 (5%)

Query: 398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQIS 457
            ++ +   P  SLL +      + +Y +   +     L+   +   +    F        
Sbjct: 13  YISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQI 72

Query: 458 VITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYD 517
            +     + +KV    + S                    ++     S     ++      
Sbjct: 73  YVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNY 132

Query: 518 SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-L 576
             G     +                   S        S +  +                L
Sbjct: 133 GDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGL 192

Query: 577 QHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR--------- 627
           ++    V      ++    +  D  + +   +                +           
Sbjct: 193 KYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAY 252

Query: 628 ----ICFNKNGTLLAVIANENRIKI 648
               I F+     L    ++  I  
Sbjct: 253 PVNSIEFSPRHKFLYTAGSDGIISC 277

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 19/129 (14%), Positives = 35/129 (27%), Gaps = 19/129 (14%)

Query: 399 VNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSD------------ARQQLEIDAHVGNVND 446
            +  +   +      +     V +  +    D             R  L+       VN 
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNS 256

Query: 447 LAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPVYSLCPHAKENIHFIFSI 505
           + FS   K +   T G D  I  W+  T  +  +F   +   V  +          +   
Sbjct: 257 IEFSPRHKFL--YTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDN----ILCLA 310

Query: 506 SVDGKIKAW 514
           + D   K  
Sbjct: 311 TSDDTFKTN 319

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 2e-05
 Identities = 9/76 (11%), Positives = 23/76 (30%), Gaps = 4/76 (5%)

Query: 841 PPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE---GHSKRVTGLVFSDA 897
            P    + +   P   +++ I   D ++ +Y          L     +   +    F D 
Sbjct: 9   APKDYISDIKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDN 67

Query: 898 LNILVSSGGDAQIFVW 913
            ++ +  G      + 
Sbjct: 68  TDLQIYVGTVQGEILK 83

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (97), Expect = 3e-04
 Identities = 6/62 (9%), Positives = 25/62 (40%), Gaps = 2/62 (3%)

Query: 877 EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG--IQTCRSLQTPDGVMT 934
           +++   +     ++ +    + ++L+ +  D  + V+  D     +   +SL+    ++ 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 935 LA 936
             
Sbjct: 62  CN 63

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 47.5 bits (112), Expect = 7e-06
 Identities = 28/231 (12%), Positives = 51/231 (22%), Gaps = 16/231 (6%)

Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDA---HVGNVNDLAFSAP 452
           G +V+    S  G  L V      V +       +     EI                  
Sbjct: 61  GYAVHISRLSASGRYLFVIGRDGKVNMIDLWMK-EPTTVAEIKIGSEARSIETSKMEGWE 119

Query: 453 CKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIH----------FI 502
            K   +          + D  T          G        H +  +           FI
Sbjct: 120 DKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFI 178

Query: 503 FSISVDGKIKAWLYDSLGA-RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN 561
            ++   GKI    Y  L   +    +            + R   +   ++     +    
Sbjct: 179 VNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKE 238

Query: 562 ESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQL 612
               AI+ T           + VH         +   D  + +   +    
Sbjct: 239 GKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH 289

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (91), Expect = 0.002
 Identities = 20/148 (13%), Positives = 42/148 (28%), Gaps = 7/148 (4%)

Query: 841 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
            P    T    +    N+ ++   D   I + +  + E+ + L+     V     S +  
Sbjct: 16  APEDRPTQQMNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGR 74

Query: 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE--T 957
            L   G D ++ + D+      T   ++      ++  S        +    +       
Sbjct: 75  YLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETS---KMEGWEDKYAIAGAYWPP 131

Query: 958 HLAIYEAEELTCLKQWFPISSVPISQAT 985
              I + E L   K           Q  
Sbjct: 132 QYVIMDGETLEPKKIQSTRGMTYDEQEY 159

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 20/159 (12%), Positives = 41/159 (25%), Gaps = 17/159 (10%)

Query: 338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKT-------- 389
           ++  F  V    ++            V          + + D+   S             
Sbjct: 210 LNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMI 269

Query: 390 ALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAF 449
             +    +  +  V     +    A  K ++  Y            ++     N+ DL  
Sbjct: 270 IPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDLRL 322

Query: 450 SAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV 488
           SA  K +  +   DD  I  +         + E    P+
Sbjct: 323 SADRKTV--MVRKDDGKIYTFPLEKPEDERTVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.2 bits (110), Expect = 7e-06
 Identities = 35/355 (9%), Positives = 86/355 (24%), Gaps = 44/355 (12%)

Query: 298 PDYSPKSSLKKEMFQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG 357
            D+SP        F S G+    D   T    + E       +          + GT  G
Sbjct: 8   EDFSPLDG-DLIAFVSRGQAFIQDVSGTYVLKVPEPLR-IRYVRRGGDTKVAFIHGTREG 65

Query: 358 DT-GLWDVNSGQKL----------------------FIRNFKVWDIGACSMLFKTALVRD 394
           D  G++D  +G+                           +              T + R 
Sbjct: 66  DFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS 125

Query: 395 PGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGS----DARQQLEIDAHVGNVNDLAFS 450
               +     S +   +   +     +   Y   +    D   +    A   N +D A +
Sbjct: 126 REAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPA 185

Query: 451 APCKQISVITCGDDKTIKVWDAVTGS-------RTYSFEGHGAPVYSLCPHAKENIHFIF 503
                 ++            D V  +       + +                +       
Sbjct: 186 FDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAG 245

Query: 504 SISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE 562
              ++    ++   +          P      +          +       +  L++++ 
Sbjct: 246 EYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDV 305

Query: 563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID 617
               +           N+++ +     +  ++   DD  I  + + K +   T++
Sbjct: 306 KTRKVTEV-------KNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVE 353

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 45.2 bits (105), Expect = 3e-05
 Identities = 38/394 (9%), Positives = 89/394 (22%), Gaps = 97/394 (24%)

Query: 336 SPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP 395
           S  + DF P+   L+   +  G   + DV+    L +                       
Sbjct: 4   SKFAEDFSPLDGDLIAFVSR-GQAFIQDVSGTYVLKVPE--------------------- 41

Query: 396 GVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFS----- 450
            + +  V    D  +  +  ++    L  Y   +   +  + + ++GNV  +        
Sbjct: 42  PLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRT--GKAEKFEENLGNVFAMGVDRNGKF 99

Query: 451 ---------------------------------------------APCKQISVITCGDDK 465
                                                            +         +
Sbjct: 100 AVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQ 159

Query: 466 TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY 525
            I V+D        +   +    +   P    +   ++ +S      +     L    + 
Sbjct: 160 AIHVYDMEGRKIFAATTEN---SHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEV 216

Query: 526 DAPGLGCT-------RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH 578
            +                         +                 +    R    L+   
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 579 NSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA 638
              SV            A +  V+  +D+   ++    +    L        + +   + 
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDL------RLSADRKTVM 330

Query: 639 VIANENRIKI--LETPESNSVDAAGVLSDNLRKL 670
           V  ++ +I    LE PE         +  + R L
Sbjct: 331 VRKDDGKIYTFPLEKPEDER-----TVETDKRPL 359

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.4 bits (95), Expect = 5e-04
 Identities = 8/67 (11%), Positives = 23/67 (34%), Gaps = 4/67 (5%)

Query: 851 FNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQI 910
            +           +   +L Y+ ++     K+      +T L  S     ++    D +I
Sbjct: 283 VHGEFAAYYQGAPEKGVLLKYDVKTR----KVTEVKNNLTDLRLSADRKTVMVRKDDGKI 338

Query: 911 FVWDVDG 917
           + + ++ 
Sbjct: 339 YTFPLEK 345

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 46.5 bits (109), Expect = 1e-05
 Identities = 26/296 (8%), Positives = 54/296 (18%), Gaps = 66/296 (22%)

Query: 333 GSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALV 392
                  +        LL             V           ++    +C  +      
Sbjct: 122 VGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDD-----QLTKSASCFHIH----- 171

Query: 393 RDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAP 452
             PG +    + S   SL     +                Q     A   N   +   A 
Sbjct: 172 --PGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV 229

Query: 453 CKQISVITCGDDKTIKVWD---AVTGSRTYSFEGHGAPVYSLCPHAKE---NIHFIFSIS 506
              I                    +G +  +F   G  + +   +               
Sbjct: 230 ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSC 289

Query: 507 VDGKIKAWLYD-SLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG 565
           +           S+G      + G     +  + +G                        
Sbjct: 290 LAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDN-------------------- 329

Query: 566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG 621
                                         +    V+ I+D    Q  ++++   G
Sbjct: 330 ---------------------------YANSAGTEVLDIYDAASDQDQSSVELDKG 358

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.4 bits (106), Expect = 3e-05
 Identities = 30/301 (9%), Positives = 60/301 (19%), Gaps = 51/301 (16%)

Query: 389 TALVRDPGVSVNRVVWSPDGSLLGVA----------YSKHIVQLYAYHGGSDARQQLEID 438
             L    G  ++  V    GS   +A               V+++            +I+
Sbjct: 57  VTLGHSLGAFLSLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---LPIADIE 113

Query: 439 AH-------VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSL 491
                       V+ +   A    + +                 S     +         
Sbjct: 114 LPDAPRFSVGPRVHIIGNCASSACL-LFFLFGSSAAAGLSVPGASDDQLTKSASCFHIH- 171

Query: 492 CPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD-------------APGLGCTRMAYS 538
            P A       +  S    + A    +  A                  A       M   
Sbjct: 172 -PGAA---ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227

Query: 539 ANGRRLFSCGTSKEGESFLVEWNESEGA---IKRTYQGLQLQ--HNSVSVVHFDTAKDQI 593
           A    +        G +     + +E           G Q+     +   +   T +   
Sbjct: 228 AVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSR 287

Query: 594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE--NRIKILE 650
                         +  Q    I  G         I   ++G       +     + I +
Sbjct: 288 SCLAAAENTSSVTASVGQTSGPISNGHD----SDAIIAAQDGASDNYANSAGTEVLDIYD 343

Query: 651 T 651
            
Sbjct: 344 A 344

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.3 bits (98), Expect = 2e-04
 Identities = 11/170 (6%), Positives = 36/170 (21%), Gaps = 19/170 (11%)

Query: 332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTAL 391
             +++ +                     G+        +   +         +M      
Sbjct: 195 APAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGD---IPAAGATMKAAIDG 251

Query: 392 VRDPGVSVNR-------VVWSPDGSLLGVAYSKHIVQLYAYHGGS-------DARQQLEI 437
                 + N        V    +   + +   +H                     Q    
Sbjct: 252 NESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHS--RSCLAAAENTSSVTASVGQTSGP 309

Query: 438 DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAP 487
            ++  + + +  +      +       + + ++DA +     S E    P
Sbjct: 310 ISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDKGP 359

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 43.8 bits (102), Expect = 9e-05
 Identities = 40/381 (10%), Positives = 93/381 (24%), Gaps = 47/381 (12%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRI-KILETPE 653
              D   I + D +  +++  ID G           + +G  L VI  + RI  I    +
Sbjct: 37  TLRDAGQIALVDGDSKKIVKVIDTGYA-VHI--SRMSASGRYLLVIGRDARIDMIDLWAK 93

Query: 654 SNSVDAAGVLSDNLRKLSVNPISTVTG-----AGIANGSVSVNEDPKEDVKPEISVEAEN 708
             +  A   +    R +  +                    ++ +    + K  +S     
Sbjct: 94  EPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMT 153

Query: 709 KSEVEKPLFARP-----SECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW 763
                     R      S      + +  +  K+  + Y +              L    
Sbjct: 154 VDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGG 213

Query: 764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV----------PCFALSKN 813
             +       A               +                         P ++ S  
Sbjct: 214 WDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHL 273

Query: 814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAI------GMDDST 867
                S  G     +    +K +  +      +  +  +P  +++              +
Sbjct: 274 GDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQS 333

Query: 868 ILIYNARSSEVISK---------LEGHSKRVTGLVFS-DALNILVSSGGDA----QIFVW 913
           + +++ ++ +   +         L   +KRV    ++     +  S          + V 
Sbjct: 334 VAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVV 393

Query: 914 DVDG---WGIQTCRSLQTPDG 931
           D        +     L TP G
Sbjct: 394 DDKTLKLKAVVKDPRLITPTG 414

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 41.9 bits (97), Expect = 4e-04
 Identities = 13/116 (11%), Positives = 36/116 (31%), Gaps = 5/116 (4%)

Query: 841 PPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALN 899
            P         +    N+ ++   D   I + +  S +++  ++     V     S +  
Sbjct: 16  KPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGR 74

Query: 900 ILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVH 955
            L+  G DA+I + D+          ++      ++    +      +    +   
Sbjct: 75  YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVE---SSKFKGYEDRYTIAGA 127

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 9/73 (12%), Positives = 20/73 (27%), Gaps = 2/73 (2%)

Query: 415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT 474
                    +       +    I     +   +A +   K++  +      T+ V D  T
Sbjct: 218 NVDKYFNTVSMIDTGTNKITARIPVG-PDPAGIAVTPDGKKV-YVALSFCNTVSVIDTAT 275

Query: 475 GSRTYSFEGHGAP 487
            + T +      P
Sbjct: 276 NTITATMAVGKNP 288

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 39.5 bits (90), Expect = 0.001
 Identities = 38/291 (13%), Positives = 77/291 (26%), Gaps = 16/291 (5%)

Query: 595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR-ICFNKNGTLLAVIANE-NRIKILETP 652
           A  +   I + D+   ++  TI  G     NP     + +GT + V     N + I++T 
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGS----NPMGAVISPDGTKVYVANAHSNDVSIIDT- 61

Query: 653 ESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV 712
                 A   +   +   S      V+  G      ++       +    +  A      
Sbjct: 62  ------ATNNVIATVPAGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTG 115

Query: 713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLST 772
           + PL    S     L  +      +S +                   +      D T   
Sbjct: 116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVT--PDGTKVY 173

Query: 773 EATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMT 832
            A                 +     ++           +K            +S+    T
Sbjct: 174 VANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGT 233

Query: 833 FKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE 883
            K    I P  P    +A  P    V       +T+ + +  ++ + + + 
Sbjct: 234 NKITARI-PVGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 21/179 (11%), Positives = 46/179 (25%), Gaps = 6/179 (3%)

Query: 454 KQISVITCGDDKTIKVWDAVTGS--RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI 511
           KQ   I   + + I VW+                  V  +     +  +    +  + ++
Sbjct: 3   KQTVYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKR-YLYVGVRPEFRV 61

Query: 512 KAWLYDS---LGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIK 568
            A+               A     T ++    G+ +F    +    S     +     + 
Sbjct: 62  LAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVV 121

Query: 569 RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR 627
              +GL   H++       T     L      +  + D   +      +        PR
Sbjct: 122 DVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPR 180

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	1103
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	100.0
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	100.0
d1tbga_	340	beta1-subunit of the signal-transducing G protein	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	100.0
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	100.0
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	100.0
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.98
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.97
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.96
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.95
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.95
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.95
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.94
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.94
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.93
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.9
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.89
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.88
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.87
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.86
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.84
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.82
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.78
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.76
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.75
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.6
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.57
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.56
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.52
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.49
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.3
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	99.22
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.2
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	99.11
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.1
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.98
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.92
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.9
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.89
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.89
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.88
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.84
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.72
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.59
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.55
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.35
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.19
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.15
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	98.03
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.94
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.93
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.89
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.87
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.79
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.7
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	97.7
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	97.7
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	97.68
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.67
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	97.61
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	97.61
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.6
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	97.57
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.57
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	97.53
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.48
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	97.45
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	97.37
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.2
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.97
d1uuja_	76	Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te	95.94
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.47
d2nxpa1	149	TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId	94.89
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	94.19
d2j4ba1	131	TAF5 subunit of TFIID {Encephalitozoon cuniculi [T	93.93
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	93.21
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	92.91
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	92.85
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	91.32
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	91.02
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.74
d2j49a1	134	TAF5 subunit of TFIID {Saccharomyces cerevisiae [T	90.49
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	90.44
d2hu7a1	313	Acylamino-acid-releasing enzyme, N-terminal donain	90.08
d1zgka1	288	Kelch-like ECH-associated protein 1, KEAP1 {Human	89.96
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	88.18

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-36  Score=331.44  Aligned_cols=293  Identities=13%  Similarity=0.172  Sum_probs=251.6

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      +.+++| +|.+.|+|++|||+|+ +||+|+ ||.|+|||+.++.....              .......+|.+.|.+++|
T Consensus        43 ~~~~~~-~H~~~V~~v~fs~~g~-~latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~  105 (337)
T d1gxra_          43 RQINTL-NHGEVVCAVTISNPTR-HVYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKL  105 (337)
T ss_dssp             EEEEEE-CCSSCCCEEEECSSSS-EEEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEE
T ss_pred             eEEEEC-CCCCcEEEEEECCCCC-EEEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEE
Confidence            344555 7999999999999998 689987 79999999987754432              112225679999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      +|||++|++|+.||+|++||+..... .....+.+|...|.+++|+|++.  ++++++.|+.|++||+.++++.....+|
T Consensus       106 s~dg~~l~s~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~  182 (337)
T d1gxra_         106 LPDGCTLIVGGEASTLSIWDLAAPTP-RIKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGH  182 (337)
T ss_dssp             CTTSSEEEEEESSSEEEEEECCCC---EEEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             cCCCCEEEEeeccccccccccccccc-ccccccccccccccccccccccc--cccccccccccccccccccccccccccc
Confidence            99999999999999999999976542 22336778999999999999999  8999999999999999999999999999


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1103)
                      ...|.+++|++  ++..+++++.|+.+++||+++++....+. +...|.+++|+|+++++++++.    ++.+++||+.+
T Consensus       183 ~~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~  255 (337)
T d1gxra_         183 TDGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNK  255 (337)
T ss_dssp             SSCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTS
T ss_pred             ccccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----ccccccccccc
Confidence            99999999954  66899999999999999999887665554 5678999999999999999876    55699999998


Q ss_pred             CeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCC
Q 001310          565 GAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANEN  644 (1103)
Q Consensus       565 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg  644 (1103)
                      ++... ...|.   ..|.+++|+|++++|++++.||.|++||..+++.+..+...   ..|.+++|+|++++|++++.||
T Consensus       256 ~~~~~-~~~~~---~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~---~~v~~~~~s~d~~~l~t~s~D~  328 (337)
T d1gxra_         256 PDKYQ-LHLHE---SCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKES---SSVLSCDISVDDKYIVTGSGDK  328 (337)
T ss_dssp             SCEEE-ECCCS---SCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECS---SCEEEEEECTTSCEEEEEETTS
T ss_pred             ccccc-ccccc---cccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCC---CCEEEEEEeCCCCEEEEEeCCC
Confidence            87653 34444   78999999999999999999999999999999998887643   4689999999999999999999


Q ss_pred             eEEEEEc
Q 001310          645 RIKILET  651 (1103)
Q Consensus       645 ~i~iw~~  651 (1103)
                      +|++||+
T Consensus       329 ~I~vWdl  335 (337)
T d1gxra_         329 KATVYEV  335 (337)
T ss_dssp             CEEEEEE
T ss_pred             eEEEEEE
Confidence            9999986

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=9.4e-36  Score=325.37  Aligned_cols=288  Identities=21%  Similarity=0.359  Sum_probs=263.7

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      .++|+||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+.+                   +.+|...|.+++|+|
T Consensus        10 ~~~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~~-------------------~~~h~~~V~~~~~~~   69 (317)
T d1vyhc1          10 KYALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERT-------------------LKGHTDSVQDISFDH   69 (317)
T ss_dssp             SCEEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCEE-------------------ECCCSSCEEEEEECT
T ss_pred             cEEEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCcEEEEeeec
Confidence            357999999999999999998 799999999999999999988765                   678999999999999


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      ++.++++++.++.+.+|+....+...   .+.+|...+.++.|+|++.  .+++++.|+.+++||+.+++.+..+.+|..
T Consensus        70 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  144 (317)
T d1vyhc1          70 SGKLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHRE  144 (317)
T ss_dssp             TSSEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSS
T ss_pred             cccccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCC
Confidence            99999999999999999998875443   5678999999999999999  799999999999999999999999999999


Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC--------------------CEEEE
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG--------------------RRLFS  546 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg--------------------~~l~~  546 (1103)
                      .+.++++++  ++.+|++++.|+.|++|++.+......+..+...+.+++++|++                    ..+++
T Consensus       145 ~~~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  222 (317)
T d1vyhc1         145 WVRMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLS  222 (317)
T ss_dssp             CEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEE
T ss_pred             cceeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEe
Confidence            999999854  67899999999999999999999999999999999999998764                    35666


Q ss_pred             EecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCc
Q 001310          547 CGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENP  626 (1103)
Q Consensus       547 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~  626 (1103)
                      ++.    ++.|++||..+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|.  ..|.
T Consensus       223 ~~~----d~~i~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~--~~V~  293 (317)
T d1vyhc1         223 GSR----DKTIKMWDVSTGMCLMTLVGHD---NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHE--HFVT  293 (317)
T ss_dssp             EET----TSEEEEEETTTTEEEEEEECCS---SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCS--SCEE
T ss_pred             ccC----CCEEEEEECCCCcEEEEEeCCC---CCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCC--CCEE
Confidence            664    6679999999999999999888   899999999999999999999999999999999999998764  4699


Q ss_pred             eEEEecCCCEEEEEECCCeEEEEE
Q 001310          627 RICFNKNGTLLAVIANENRIKILE  650 (1103)
Q Consensus       627 ~v~~s~~g~~l~~~~~dg~i~iw~  650 (1103)
                      +++|+|++++|++++.||+|++||
T Consensus       294 ~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         294 SLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEcCCCCEEEEEeCCCeEEEeC
Confidence            999999999999999999999996

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=4.3e-35  Score=318.05  Aligned_cols=291  Identities=16%  Similarity=0.200  Sum_probs=247.7

Q ss_pred             cCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          332 EGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      .+++.+.+++++|+|+. +|.++ ++.|.+||+.+++....                   +.+|.+.|++++|+|||++|
T Consensus        15 ~~r~~~~~~a~~~~g~~-l~~~~-~~~v~i~~~~~~~~~~~-------------------~~~H~~~v~~~~~sp~g~~l   73 (311)
T d1nr0a1          15 TARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTEI-------------------YTEHSHQTTVAKTSPSGYYC   73 (311)
T ss_dssp             CCTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCEE-------------------ECCCSSCEEEEEECTTSSEE
T ss_pred             CCCCCeEEEEEcCCCCE-EEEEe-CCEEEEEECCCCceeEE-------------------EcCCCCCEEEEEEeCCCCeE
Confidence            34556788999999995 56654 56799999998877654                   67899999999999999999


Q ss_pred             EEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC--CCceEEEeCCCCceeEEeecCCCceE
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD--DKTIKVWDAVTGSRTYSFEGHGAPVY  489 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~--d~~i~iwd~~~~~~~~~~~~~~~~v~  489 (1103)
                      |+|+.||+|+|||+.+++.... ..+.+|..+|.+++|+|+++  ++++++.  +..++||++++++....+.+|...|.
T Consensus        74 atg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~  150 (311)
T d1nr0a1          74 ASGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN  150 (311)
T ss_dssp             EEEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEE
T ss_pred             eccccCceEeeeeeeccccccc-cccccccCcccccccccccc--ccccccccccccccccccccccccccccccccccc
Confidence            9999999999999998765432 35788999999999999999  6777764  56799999999999999999999999


Q ss_pred             EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1103)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1103)
                      +++|+++.+ ..+++|+.||.|++||+++.+.......+..+|.+++|+|+++++++++.    ++.|++||..+++.+.
T Consensus       151 ~v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~  225 (311)
T d1nr0a1         151 SVDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG  225 (311)
T ss_dssp             EEEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred             cccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----cccccccccccccccc
Confidence            999976432 36889999999999999999988899999999999999999999999876    5669999999998887


Q ss_pred             EEeccc----ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCe
Q 001310          570 TYQGLQ----LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENR  645 (1103)
Q Consensus       570 ~~~~~~----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~  645 (1103)
                      .+....    .|...|.+++|+|++++|++|+.||+|+|||+++++++..+..+... ....+.+.++++.+++++.||.
T Consensus       226 ~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~  304 (311)
T d1nr0a1         226 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF  304 (311)
T ss_dssp             ECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred             cccccccccccccccccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence            775422    23478999999999999999999999999999999999998766432 2344556666778999999999


Q ss_pred             EEEEEcC
Q 001310          646 IKILETP  652 (1103)
Q Consensus       646 i~iw~~~  652 (1103)
                      |++||.+
T Consensus       305 i~~wd~d  311 (311)
T d1nr0a1         305 INFVNPE  311 (311)
T ss_dssp             EEEEETT
T ss_pred             EEEEeCC
Confidence            9999964

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=4.4e-34  Score=315.33  Aligned_cols=283  Identities=13%  Similarity=0.181  Sum_probs=243.1

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccce--EeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQL--EIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~--~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      +|...|.+++|||+|++||+|+ ||.|+|||+.++.......  ...+|.+.|.+++|+||++  +|++++.|++|++||
T Consensus        49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~--~l~s~~~dg~i~iwd  125 (337)
T d1gxra_          49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWD  125 (337)
T ss_dssp             CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEE
T ss_pred             CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCC--EEEEeeccccccccc
Confidence            6999999999999999999997 8999999998765443322  3457999999999999999  899999999999999


Q ss_pred             CCC--CceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEec
Q 001310          472 AVT--GSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGT  549 (1103)
Q Consensus       472 ~~~--~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~  549 (1103)
                      +..  ++....+..|...+..+++++  ++.++++++.|+.|++|++.+.+.......+...+.+++|++++..+++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~  203 (337)
T d1gxra_         126 LAAPTPRIKAELTSSAPACYALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL  203 (337)
T ss_dssp             CCCC--EEEEEEECSSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred             cccccccccccccccccccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            874  456677889999999999854  6789999999999999999999888888889999999999999999999876


Q ss_pred             CCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE
Q 001310          550 SKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       550 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~  629 (1103)
                          ++.+++||+++++.+..+. +.   ..|.+++|+|+++.+++++.|+.+++||+.+++.....   .+...|.+++
T Consensus       204 ----d~~v~i~d~~~~~~~~~~~-~~---~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---~~~~~i~~v~  272 (337)
T d1gxra_         204 ----DNTVRSWDLREGRQLQQHD-FT---SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH---LHESCVLSLK  272 (337)
T ss_dssp             ----TSEEEEEETTTTEEEEEEE-CS---SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEEC---CCSSCEEEEE
T ss_pred             ----cccccccccccceeecccc-cc---cceEEEEEcccccccceecccccccccccccccccccc---ccccccceEE
Confidence                6679999999999887765 33   68999999999999999999999999999988876543   2345689999


Q ss_pred             EecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001310          630 FNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1103)
                      |+|++++|++++.||.|++||..+++.+....                                                
T Consensus       273 ~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~------------------------------------------------  304 (337)
T d1gxra_         273 FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK------------------------------------------------  304 (337)
T ss_dssp             ECTTSSEEEEEETTSEEEEEETTTCCEEEEEE------------------------------------------------
T ss_pred             ECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc------------------------------------------------
Confidence            99999999999999999999998876553321                                                


Q ss_pred             cccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeec
Q 001310          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1103)
Q Consensus       710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~  763 (1103)
                                             |...|.+++|+|++++|++++.||.|++||+
T Consensus       305 -----------------------~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         305 -----------------------ESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             -----------------------CSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             -----------------------CCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                                   4466788888888888888888888888875

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=100.00  E-value=3.7e-34  Score=312.56  Aligned_cols=315  Identities=20%  Similarity=0.307  Sum_probs=264.2

Q ss_pred             EEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEe
Q 001310          469 VWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       469 iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      .|. ..+...++++||.++|++++|+|  ++.+|++|+.||+|++||+.+++....+..|...|.+++|+|++.+++++.
T Consensus         2 ~w~-p~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~   78 (317)
T d1vyhc1           2 EWI-PRPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCS   78 (317)
T ss_dssp             CCC-CCSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEE
T ss_pred             ccC-CCCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccc
Confidence            354 23445678999999999999965  668999999999999999999999999999999999999999999999987


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1103)
                      .    +..+..|+....+....+.++.   ..+.++.|+++++.+++++.|+.+++||+.+++.+..+..+.  ..+.++
T Consensus        79 ~----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~--~~~~~~  149 (317)
T d1vyhc1          79 A----DMTIKLWDFQGFECIRTMHGHD---HNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHR--EWVRMV  149 (317)
T ss_dssp             T----TSCCCEEETTSSCEEECCCCCS---SCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEE
T ss_pred             c----cccccccccccccccccccccc---ccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCC--Ccceee
Confidence            6    4458899999888888888777   889999999999999999999999999999999999888664  458899


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccc
Q 001310          629 CFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAEN  708 (1103)
Q Consensus       629 ~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~  708 (1103)
                      +|+|+++++++++.|+.|++|+..++.....+..+...+.++.                                     
T Consensus       150 ~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~-------------------------------------  192 (317)
T d1vyhc1         150 RPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS-------------------------------------  192 (317)
T ss_dssp             EECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEE-------------------------------------
T ss_pred             ecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEE-------------------------------------
Confidence            9999999999999999999999998877766665544444444                                     


Q ss_pred             ccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310          709 KSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1103)
Q Consensus       709 ~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1103)
                                                       ++|++......                                    
T Consensus       193 ---------------------------------~~~~~~~~~~~------------------------------------  203 (317)
T d1vyhc1         193 ---------------------------------WAPESSYSSIS------------------------------------  203 (317)
T ss_dssp             ---------------------------------ECCSCGGGGGG------------------------------------
T ss_pred             ---------------------------------Eeeccccceee------------------------------------
Confidence                                             44433211000                                    


Q ss_pred             CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCe
Q 001310          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDST  867 (1103)
Q Consensus       789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~  867 (1103)
                                  ............++.++++++ |+.|++||..+++.+.++.+|...|++++|+| ++++|++|+.||.
T Consensus       204 ------------~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~  270 (317)
T d1vyhc1         204 ------------EATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKT  270 (317)
T ss_dssp             ------------GCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTE
T ss_pred             ------------ccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCe
Confidence                        011111222334566777776 79999999999999999999999999999999 8999999999999


Q ss_pred             EEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEE
Q 001310          868 ILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWD  914 (1103)
Q Consensus       868 v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd  914 (1103)
                      |++||+.+++++..+.+|.+.|++++|+|++++|++++.||+|+|||
T Consensus       271 i~iwd~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         271 LRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EEEECCTTSCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred             EEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence            99999999999999999999999999999999999999999999997

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=7.3e-34  Score=320.89  Aligned_cols=303  Identities=15%  Similarity=0.234  Sum_probs=240.8

Q ss_pred             ccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCE
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSL  410 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~  410 (1103)
                      .+|++.|+||+|||||+ +||+|+ |++|+|||+.+++.+......... .............+|...|.+++|+|||++
T Consensus        59 ~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~  135 (388)
T d1erja_          59 LDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSPDGKF  135 (388)
T ss_dssp             EECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECTTSSE
T ss_pred             CCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEECCCCCc
Confidence            37999999999999998 689987 899999999999887653211000 000111222335578899999999999999


Q ss_pred             EEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEE
Q 001310          411 LGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1103)
Q Consensus       411 las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~  490 (1103)
                      |++|+.||.|++||...++.+.   .+.+|...|.+++|++++.  .+++++.++.+++||..+.........+...+ .
T Consensus       136 l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~  209 (388)
T d1erja_         136 LATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVT-T  209 (388)
T ss_dssp             EEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSSCEE-E
T ss_pred             ceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeeccccccccccccccccc-c
Confidence            9999999999999999886554   6789999999999999998  79999999999999999998888777555544 4


Q ss_pred             EEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-------cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          491 LCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-------DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       491 ~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-------~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      +.+. ..++.+|++++.||.|++|+..+......+       ..+...|.+++|+|++++|++++.    ++.|++||+.
T Consensus       210 ~~~~-~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~iwd~~  284 (388)
T d1erja_         210 VAVS-PGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKLWNLQ  284 (388)
T ss_dssp             EEEC-STTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEEEEC-
T ss_pred             cccc-CCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEEEEecc
Confidence            4444 346789999999999999999988766544       345678999999999999999986    6679999998


Q ss_pred             CCeeE------------EEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEE--
Q 001310          564 EGAIK------------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRIC--  629 (1103)
Q Consensus       564 ~~~~~------------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~--  629 (1103)
                      ++...            .....|.   ..|.+++|+|++++|++|+.||.|++||+.+++++..+..|.  ..|.+++  
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~--~~V~~~~~~  359 (388)
T d1erja_         285 NANNKSDSKTPNSGTCEVTYIGHK---DFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHR--NSVISVAVA  359 (388)
T ss_dssp             --------------CEEEEEECCS---SCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEEC
T ss_pred             CCccccccccccccceeeeccccc---ceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCC--CCEEEEEEe
Confidence            66433            2333334   789999999999999999999999999999999999998774  4577776  


Q ss_pred             ----EecCCCEEEEEECCCeEEEEEcC
Q 001310          630 ----FNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       630 ----~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                          |+|++++|++|+.||+|++|+++
T Consensus       360 ~~~~~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         360 NGSSLGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             SSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred             cCcccCCCCCEEEEEeCCCEEEEEeee
Confidence                46789999999999999999974

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.5e-33  Score=309.83  Aligned_cols=295  Identities=19%  Similarity=0.266  Sum_probs=258.6

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ....++|+||++.|++++|+|+++ +||+|+.||+|+|||+.+++.+..                   +.+|...|.+++
T Consensus        45 ~~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~~-------------------~~~~~~~v~~v~  104 (340)
T d1tbga_          45 MRTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVHA-------------------IPLRSSWVMTCA  104 (340)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEEE-------------------EECSCSCEEEEE
T ss_pred             eeeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEEE-------------------EecccccEEeeE
Confidence            356789999999999999999998 799999999999999999988765                   567999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCcc-ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDA-RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~-~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~  482 (1103)
                      |+|+++++++|+.|+.+.+|+....... .....+.+|...........+.   .+.....|.....|+...........
T Consensus       105 ~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (340)
T d1tbga_         105 YAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFT  181 (340)
T ss_dssp             ECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEE
T ss_pred             eeccceeeeeecccceeecccccccccccccceeccccccccccccccccc---cccccccccccccccccccccccccc
Confidence            9999999999999999999998765432 2333567788877777666654   47888889999999988888888888


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      .+...+....+.+  .+.++++++.|+.|++||+++.+....+..|...|.+++|+|++++|++++.    ++.|++||+
T Consensus       182 ~~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~  255 (340)
T d1tbga_         182 GHTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDL  255 (340)
T ss_dssp             CCSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred             ccceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEee
Confidence            8888888887754  5679999999999999999999999999999999999999999999999986    566999999


Q ss_pred             CCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      ........+.... +...+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.  ..|.+++|+|++++|++|+.
T Consensus       256 ~~~~~~~~~~~~~-~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~--~~V~~l~~s~d~~~l~s~s~  332 (340)
T d1tbga_         256 RADQELMTYSHDN-IICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSW  332 (340)
T ss_dssp             TTTEEEEEECCTT-CCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEET
T ss_pred             ccccccccccccc-ccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEeCCCCEEEEEcc
Confidence            9998877765433 34679999999999999999999999999999999999998764  46999999999999999999


Q ss_pred             CCeEEEEE
Q 001310          643 ENRIKILE  650 (1103)
Q Consensus       643 dg~i~iw~  650 (1103)
                      ||.|++||
T Consensus       333 Dg~v~iWd  340 (340)
T d1tbga_         333 DSFLKIWN  340 (340)
T ss_dssp             TSCEEEEC
T ss_pred             CCEEEEeC
Confidence            99999996

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.9e-33  Score=317.53  Aligned_cols=325  Identities=14%  Similarity=0.153  Sum_probs=257.8

Q ss_pred             EEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCcc
Q 001310          352 VGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDA  431 (1103)
Q Consensus       352 sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~  431 (1103)
                      .+..++...+|+............               ...+|++.|+|++|||||++||+|+ |++|+|||+.+++.+
T Consensus        33 ~~~~~~~~~~~~~~~~~~~~~~l~---------------~~~~H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~   96 (388)
T d1erja_          33 KKQTNDYYILYNPALPREIDVELH---------------KSLDHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLV   96 (388)
T ss_dssp             EEECSSCEEEECTTSCCCEEEEEE---------------EEEECSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEE
T ss_pred             ccCCCCcEEEeCCCCCcceeeeeE---------------eeCCCCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceE
Confidence            445567788898766554322100               0235999999999999999999986 889999999987654


Q ss_pred             ccc---------------eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeec
Q 001310          432 RQQ---------------LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAK  496 (1103)
Q Consensus       432 ~~~---------------~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~  496 (1103)
                      ...               ....+|...|.+++|+|+++  +|++|+.||.|++||..+++.+..+.+|...|.++++++ 
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~--~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~-  173 (388)
T d1erja_          97 ARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGK--FLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP-  173 (388)
T ss_dssp             EEECC-----------------CCCCBEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECT-
T ss_pred             eeecccccccccccccccccccCCCCCEEEEEECCCCC--cceeccccccccccccccccccccccccccccccccccc-
Confidence            321               12235777899999999999  899999999999999999999999999999999999854 


Q ss_pred             CCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc-
Q 001310          497 ENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ-  575 (1103)
Q Consensus       497 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-  575 (1103)
                       ++..+++++.++.+++||..+.........+...+....+.+++++|++++.    ++.|++||..++.....+.... 
T Consensus       174 -~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~i~~~~~~~~~~~~~~~~~  248 (388)
T d1erja_         174 -SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL----DRAVRVWDSETGFLVERLDSENE  248 (388)
T ss_dssp             -TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCEEEEEET----TSCEEEEETTTCCEEEEEC----
T ss_pred             -ccccccccccceeeeeeeccccccccccccccccccccccCCCCCeEEEEcC----CCeEEEeecccCccceeeccccc
Confidence             6679999999999999999988877777666655555555568899999876    5569999999998877664321 


Q ss_pred             ---ccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEc----------CCCCCCCCceEEEecCCCEEEEEEC
Q 001310          576 ---LQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTID----------AGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       576 ---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~----------~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                         .|...|.+++|+|++++|++++.||.|++||+.++.......          ...+...|.+++|+|++++|++|+.
T Consensus       249 ~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~  328 (388)
T d1erja_         249 SGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSK  328 (388)
T ss_dssp             --CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEET
T ss_pred             cccCCCCCEEEEEECCCCCEEEEEECCCcEEEEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeC
Confidence               234789999999999999999999999999998765432211          1122456899999999999999999


Q ss_pred             CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccccccc
Q 001310          643 ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       643 dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                      ||.|++||+.+++.+..+.+|...|.++++.+...                .+|++.++++++.|++|++|++.
T Consensus       329 dg~i~vwd~~~~~~~~~l~~H~~~V~~~~~~~~~~----------------~spd~~~l~s~s~Dg~I~iW~~~  386 (388)
T d1erja_         329 DRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSS----------------LGPEYNVFATGSGDCKARIWKYK  386 (388)
T ss_dssp             TSEEEEEETTTCCEEEEEECCSSCEEEEEECSSCT----------------TCTTCEEEEEEETTSEEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEeCCCCCEEEEEEecCcc----------------cCCCCCEEEEEeCCCEEEEEeee
Confidence            99999999999999999999999999988864321                26899999999999999999975

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1.3e-33  Score=306.00  Aligned_cols=294  Identities=13%  Similarity=0.153  Sum_probs=231.3

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      .+.+++.||++.|++++|||||+ +|++|+.||+|++||+++++.+..                  ...+|...|++++|
T Consensus         3 ~~~~~~~GH~~~V~~l~~s~dg~-~l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~   63 (299)
T d1nr0a2           3 SIDQVRYGHNKAITALSSSADGK-TLFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKT   63 (299)
T ss_dssp             EEEEEECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEE
T ss_pred             ccceEcCCCCCCcEEEEECCCCC-EEEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEe
Confidence            56789999999999999999998 689999999999999999987754                  13579999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecC
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      +|+|+++ +++.|+.+++|+...............|...+.+++|+|+++  +++++ .++.+++|+..  +.....  .
T Consensus        64 ~~~g~~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~-~~~~i~~~~~~--~~~~~~--~  135 (299)
T d1nr0a2          64 TSKGDLF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAA-CYKHIAIYSHG--KLTEVP--I  135 (299)
T ss_dssp             CTTSCEE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEE-ESSEEEEEETT--EEEEEE--C
T ss_pred             eccceee-cccceeeEEEeccCCccccccccccccccccccccccccccc--ccccc-ccccccccccc--cccccc--c
Confidence            9999765 556789999999876543333333456788899999999998  45544 46789999843  333332  3


Q ss_pred             CCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE-EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          485 GAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV-DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~-~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      ...+.+++++  +++.++++++.||.|++||+++..... ....+...|.+++|+|++++|++++.    ++.|++||+.
T Consensus       136 ~~~~~~~~~s--~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~  209 (299)
T d1nr0a2         136 SYNSSCVALS--NDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVA  209 (299)
T ss_dssp             SSCEEEEEEC--TTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGG
T ss_pred             cccccccccc--cccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccc
Confidence            3456778875  467899999999999999998776543 44567789999999999999999876    5569999998


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC-CCCCceEEEecCCCEEEEEEC
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG-LPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                      ++...........|...|.+++|+|++++|++|+.||.|++||+.++..........+ ...+.++ +++++++|++++.
T Consensus       210 ~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~  288 (299)
T d1nr0a2         210 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQ  288 (299)
T ss_dssp             GTTEESCCCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEET
T ss_pred             ccccccccccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeC
Confidence            8877655544444458999999999999999999999999999998765443333222 2334444 5566789999999


Q ss_pred             CCeEEEEEcC
Q 001310          643 ENRIKILETP  652 (1103)
Q Consensus       643 dg~i~iw~~~  652 (1103)
                      |+.|++||+.
T Consensus       289 D~~i~iWdl~  298 (299)
T d1nr0a2         289 DSNIKFWNVP  298 (299)
T ss_dssp             TSCEEEEECC
T ss_pred             CCEEEEEecc
Confidence            9999999974

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=1e-32  Score=299.13  Aligned_cols=286  Identities=11%  Similarity=0.102  Sum_probs=232.3

Q ss_pred             CCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcccee
Q 001310          624 ENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEIS  703 (1103)
Q Consensus       624 ~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s  703 (1103)
                      ....++++|+|+.|+.+. ++.+.+|++.+......+.                                          
T Consensus        19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~------------------------------------------   55 (311)
T d1nr0a1          19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYT------------------------------------------   55 (311)
T ss_dssp             CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEEC------------------------------------------
T ss_pred             CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEc------------------------------------------
Confidence            356789999999999886 4679999988764443332                                          


Q ss_pred             eccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeee
Q 001310          704 VEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLY  783 (1103)
Q Consensus       704 ~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~  783 (1103)
                                                  +|...|.+++|+|+|++|++++.||.|++|++.....               
T Consensus        56 ----------------------------~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~---------------   92 (311)
T d1nr0a1          56 ----------------------------EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH---------------   92 (311)
T ss_dssp             ----------------------------CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC---------------
T ss_pred             ----------------------------CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc---------------
Confidence                                        2667888999999999999999999999998765421               


Q ss_pred             cCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC---CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC-EE
Q 001310          784 QPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG---GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN-VI  859 (1103)
Q Consensus       784 ~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d---g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~-~l  859 (1103)
                             .....+.  +|..+|.+++|+|++++++++++   ..+++|++.+++...++.+|...|++++|+| +++ .|
T Consensus        93 -------~~~~~~~--~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l  162 (311)
T d1nr0a1          93 -------ILKTTIP--VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRI  162 (311)
T ss_dssp             -------CEEEEEE--CSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEE
T ss_pred             -------ccccccc--cccCccccccccccccccccccccccccccccccccccccccccccccccccccccc-cceeee
Confidence                   1111121  38889999999999999999873   4599999999999999999999999999999 555 58


Q ss_pred             EEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeee--ecCCCcccCCC
Q 001310          860 AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSL--QTPDGVMTLAP  937 (1103)
Q Consensus       860 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~--~~~~~~~~~~~  937 (1103)
                      ++|+.||.|++||+.+++....+.+|...|.+++|+|++++|++++.|+.|++||+.+++.......  ....+|.   .
T Consensus       163 ~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~---~  239 (311)
T d1nr0a1         163 ISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHS---G  239 (311)
T ss_dssp             EEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSS---S
T ss_pred             cccccccccccccccccccccccccccccccccccCcccccccccccccccccccccccccccccccccccccccc---c
Confidence            8999999999999999999999999999999999999999999999999999999998764432111  1122333   4


Q ss_pred             CceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCC
Q 001310          938 SETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEAS 1008 (1103)
Q Consensus       938 ~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~ 1008 (1103)
                      .|.+++|+|+|++|+++ .|+.|+|||+.+++++..+...+......+.+.+++.+|++++.||.|++||.+
T Consensus       240 ~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d  311 (311)
T d1nr0a1         240 SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE  311 (311)
T ss_dssp             CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred             cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEEEecCCEEEEEECCCEEEEEeCC
Confidence            89999999999999995 789999999999999988654433333444555667789999999999999975

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.2e-32  Score=305.98  Aligned_cols=346  Identities=15%  Similarity=0.186  Sum_probs=265.9

Q ss_pred             eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCc
Q 001310          522 RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV  601 (1103)
Q Consensus       522 ~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~  601 (1103)
                      +.++.+|...|.. ++++++++|++|+.    ++.|++||+.+++.+..+.+|.   ..|.+++|+|+ .+|++++.|++
T Consensus         5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~---~~V~~l~~s~~-~~l~s~s~D~~   75 (355)
T d1nexb2           5 RTTLRGHMTSVIT-CLQFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHD---GGVWALKYAHG-GILVSGSTDRT   75 (355)
T ss_dssp             EEEEECCSSSCEE-EEEEETTEEEEEET----TTEEEEEETTTTEEEEEEECCS---SCEEEEEEETT-TEEEEEETTCC
T ss_pred             cEEECCcCCCcEE-EEEECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCC---CCEEEEEEcCC-CEEEEEecccc
Confidence            4567888877532 34557899999976    6679999999999999999988   89999999985 58999999999


Q ss_pred             EEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeee
Q 001310          602 IKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGA  681 (1103)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~  681 (1103)
                      |++|+....+..................+++++.++++++.|+.|++|++...............               
T Consensus        76 i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~---------------  140 (355)
T d1nexb2          76 VRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY---------------  140 (355)
T ss_dssp             EEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC---------------
T ss_pred             cccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecccccccee---------------
Confidence            99999999988887766555444566778899999999999999999998876433221100000               


Q ss_pred             eccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCc-EEEEeecCceEEE
Q 001310          682 GIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQ-AIFALASNGVHLM  760 (1103)
Q Consensus       682 ~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~-~l~~~~~dg~i~v  760 (1103)
                                                                              ......+... .++....      
T Consensus       141 --------------------------------------------------------~~~~~~~~~~~~~~~~~~------  158 (355)
T d1nexb2         141 --------------------------------------------------------PLVFHTPEENPYFVGVLR------  158 (355)
T ss_dssp             --------------------------------------------------------CEEESCTTTCTTEEEEEE------
T ss_pred             --------------------------------------------------------ccceeccccccceeeeee------
Confidence                                                                    0000000000 0000000      


Q ss_pred             eecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEe
Q 001310          761 WRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTI  839 (1103)
Q Consensus       761 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~  839 (1103)
                                                             .|...+  ..+.+++++++++. |+.|++||+.+++.+...
T Consensus       159 ---------------------------------------~~~~~v--~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~  197 (355)
T d1nexb2         159 ---------------------------------------GHMASV--RTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYIL  197 (355)
T ss_dssp             ---------------------------------------CCSSCE--EEEEEETTEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             ---------------------------------------eccccc--cccccccceeeeecccceeeeeecccccceeee
Confidence                                                   133333  34556778888886 789999999999999999


Q ss_pred             cCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCc
Q 001310          840 MPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWG  919 (1103)
Q Consensus       840 ~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~  919 (1103)
                      ..+...+.++.++| ++.++++++.||.|++||+.++..+..+.+|...|.+++|+  +++|++++.||.|++||+.++.
T Consensus       198 ~~~~~~~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~  274 (355)
T d1nexb2         198 SGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYS  274 (355)
T ss_dssp             CCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCC
T ss_pred             eccccccccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccc
Confidence            99999999999999 89999999999999999999999999999999999999997  4699999999999999999865


Q ss_pred             eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecC
Q 001310          920 IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVD  999 (1103)
Q Consensus       920 ~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~d  999 (1103)
                      ...    ..   |..  ......+|++++.+++++.|+.|++||+++|+++.....+|..+|.+++|+|+ .++++++.|
T Consensus       275 ~~~----~~---~~~--~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~d  344 (355)
T d1nexb2         275 RKF----SY---HHT--NLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKD  344 (355)
T ss_dssp             EEE----EE---ECT--TCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESS
T ss_pred             eec----cc---ccC--CceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECC
Confidence            322    11   111  12233567899999999999999999999999987767889999999999987 578888999


Q ss_pred             CcEEEEeC
Q 001310         1000 GTLSIHEA 1007 (1103)
Q Consensus      1000 g~v~vWd~ 1007 (1103)
                      |+++||.+
T Consensus       345 g~~~l~~~  352 (355)
T d1nexb2         345 GQSFLEIL  352 (355)
T ss_dssp             SCEEEEEE
T ss_pred             CcEEEEEE
Confidence            99777654

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=2.6e-33  Score=313.48  Aligned_cols=264  Identities=11%  Similarity=0.051  Sum_probs=209.8

Q ss_pred             CcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEE
Q 001310          334 SSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGV  413 (1103)
Q Consensus       334 ~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las  413 (1103)
                      .++|+|++|||||+ +||+|+.|+.|+|||+++++.....                 .+.+|.++|.+++|+|++++||+
T Consensus         7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~~~-----------------~l~gH~~~V~~l~fsp~~~~l~s   68 (371)
T d1k8kc_           7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-----------------ELKEHNGQVTGVDWAPDSNRIVT   68 (371)
T ss_dssp             SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-----------------EEECCSSCEEEEEEETTTTEEEE
T ss_pred             CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEEEE-----------------EecCCCCCEEEEEECCCCCEEEE
Confidence            36899999999998 6899999999999999887644321                 26789999999999999999999


Q ss_pred             EeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCcee----EEeecCCCceE
Q 001310          414 AYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRT----YSFEGHGAPVY  489 (1103)
Q Consensus       414 ~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~----~~~~~~~~~v~  489 (1103)
                      |+.|++|+|||+.++... ....+.+|...|.+++|+|+++  .+++++.|++|++|++......    .....|...|.
T Consensus        69 ~s~D~~i~vWd~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~  145 (371)
T d1k8kc_          69 CGTDRNAYVWTLKGRTWK-PTLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL  145 (371)
T ss_dssp             EETTSCEEEEEEETTEEE-EEEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred             EECCCeEEEEeecccccc-cccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence            999999999999876533 2335678999999999999999  8999999999999998776543    34467889999


Q ss_pred             EEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE
Q 001310          490 SLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR  569 (1103)
Q Consensus       490 ~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~  569 (1103)
                      +++|+|  ++.+|++|+.||+|++|+.............          +.                  ..+...++...
T Consensus       146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~----------~~------------------~~~~~~~~~~~  195 (371)
T d1k8kc_         146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPT----------PW------------------GSKMPFGELMF  195 (371)
T ss_dssp             EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCB----------TT------------------BSCCCTTCEEE
T ss_pred             cccccc--cccceeccccCcEEEEEeeccCccccccccc----------cc------------------cccccceeeee
Confidence            999965  7789999999999999998654322111000          00                  00112344445


Q ss_pred             EEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEE
Q 001310          570 TYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKIL  649 (1103)
Q Consensus       570 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw  649 (1103)
                      ...+|.   ..|.+++|+|+++++++++.|+.|++||+.+++.+..+..+.  .+|.+++|+|+++++++|. |+.+++|
T Consensus       196 ~~~~~~---~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--~~v~s~~fs~d~~~la~g~-d~~~~~~  269 (371)
T d1k8kc_         196 ESSSSC---GWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET--LPLLAVTFITESSLVAAGH-DCFPVLF  269 (371)
T ss_dssp             ECCCCS---SCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS--CCEEEEEEEETTEEEEEET-TSSCEEE
T ss_pred             eccCcc---CcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc--ccceeeeecCCCCEEEEEc-CCceEEE
Confidence            555555   889999999999999999999999999999999999888763  4689999999998877655 6777776


Q ss_pred             EcCCC
Q 001310          650 ETPES  654 (1103)
Q Consensus       650 ~~~~~  654 (1103)
                      .....
T Consensus       270 ~~~~~  274 (371)
T d1k8kc_         270 TYDSA  274 (371)
T ss_dssp             EEETT
T ss_pred             EeeCC
Confidence            65543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=3.3e-32  Score=302.51  Aligned_cols=289  Identities=17%  Similarity=0.210  Sum_probs=228.4

Q ss_pred             eeEecccCCcCc-eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          326 VAQTLIEGSSSP-MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       326 ~~~~l~~h~~~V-~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ...+|+||.+.| +|++|  ||+ +||+|+.||+|+|||+.+++.+.+                   +.+|.+.|.+++|
T Consensus         4 ~~~tL~GH~~~vitc~~~--~~~-~l~tgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~l~~   61 (355)
T d1nexb2           4 QRTTLRGHMTSVITCLQF--EDN-YVITGADDKMIRVYDSINKKFLLQ-------------------LSGHDGGVWALKY   61 (355)
T ss_dssp             EEEEEECCSSSCEEEEEE--ETT-EEEEEETTTEEEEEETTTTEEEEE-------------------EECCSSCEEEEEE
T ss_pred             CcEEECCcCCCcEEEEEE--CCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EECCCCCEEEEEE
Confidence            356899998887 56555  577 699999999999999999988765                   7789999999999


Q ss_pred             CCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEe---
Q 001310          405 SPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSF---  481 (1103)
Q Consensus       405 spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---  481 (1103)
                      +|+ .+|++|+.|++|++|++...+..... ....+........+.+++.  .+++++.|+.|++||+.++..+...   
T Consensus        62 s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~i~iw~~~~~~~~~~~~~~  137 (355)
T d1nexb2          62 AHG-GILVSGSTDRTVRVWDIKKGCCTHVF-EGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLPKESSVPDHGEE  137 (355)
T ss_dssp             ETT-TEEEEEETTCCEEEEETTTTEEEEEE-CCCSSCEEEEEEEEETTEE--EEEEEETTSEEEEEECCC----------
T ss_pred             cCC-CEEEEEeccccccccccccccccccc-ccccccccccccccccccc--eeeeecCCCcEEEEEccCCceecccccc
Confidence            986 58999999999999999887654322 2223444566777888888  8999999999999999876544322   


Q ss_pred             --------------------ecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCC
Q 001310          482 --------------------EGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANG  541 (1103)
Q Consensus       482 --------------------~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg  541 (1103)
                                          ..|...+....    .++.+++++..|+.|++||+.+.+.......+...+.++.+++++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~----~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (355)
T d1nexb2         138 HDYPLVFHTPEENPYFVGVLRGHMASVRTVS----GHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHER  213 (355)
T ss_dssp             -CCCEEESCTTTCTTEEEEEECCSSCEEEEE----EETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTT
T ss_pred             ceeccceeccccccceeeeeeeccccccccc----cccceeeeecccceeeeeecccccceeeeeccccccccccccccc
Confidence                                22333343332    355799999999999999999998888888888899999999999


Q ss_pred             CEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCC
Q 001310          542 RRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGG  621 (1103)
Q Consensus       542 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~  621 (1103)
                      .++++++.    ++.|++||..++..+..+.+|.   ..|.++++++  +++++++.||.|++||+.++.........  
T Consensus       214 ~~~~~~~~----d~~i~i~d~~~~~~~~~~~~h~---~~v~~~~~~~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~--  282 (355)
T d1nexb2         214 KRCISASM----DTTIRIWDLENGELMYTLQGHT---ALVGLLRLSD--KFLVSAAADGSIRGWDANDYSRKFSYHHT--  282 (355)
T ss_dssp             TEEEEEET----TSCEEEEETTTCCEEEEECCCS---SCCCEEEECS--SEEEEECTTSEEEEEETTTCCEEEEEECT--
T ss_pred             eeeecccc----cceEEeeecccccccccccccc---cccccccccc--ceeeeeecccccccccccccceecccccC--
Confidence            99999986    5569999999999999999888   8899999864  68999999999999999988765544322  


Q ss_pred             CCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCee
Q 001310          622 LPENPRICFNKNGTLLAVIANENRIKILETPESNSV  657 (1103)
Q Consensus       622 ~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~  657 (1103)
                       ......+++++++++++++ |+.|++||+.+++.+
T Consensus       283 -~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~  316 (355)
T d1nexb2         283 -NLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLV  316 (355)
T ss_dssp             -TCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBC
T ss_pred             -CceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEE
Confidence             1223446677888777665 789999999987654

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=6.1e-32  Score=298.57  Aligned_cols=286  Identities=14%  Similarity=0.183  Sum_probs=257.9

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      |.||.+.|++++|+|++++||+|+.||+|+|||+.+++.+.   .+.+|...|.+++|+|++.  ++++|+.|+.+++|+
T Consensus        51 L~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~~~  125 (340)
T d1tbga_          51 LRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIYN  125 (340)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEEEE
T ss_pred             ECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeeccc
Confidence            88999999999999999999999999999999999987655   6789999999999999999  899999999999999


Q ss_pred             CCCC----ceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          472 AVTG----SRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       472 ~~~~----~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      ....    .....+.+|...........   +..+.....+.....+.................+....+.+.+.+++++
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (340)
T d1tbga_         126 LKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSG  202 (340)
T ss_dssp             SSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred             ccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeEEe
Confidence            7654    34566777887776665533   3578889999999999988888888888888899999999999999998


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCce
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPR  627 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~  627 (1103)
                      ..    ++.|++||+.+++.+..+.+|.   ..|.+++|+|++++|++|+.||.|++||+........+........+.+
T Consensus       203 ~~----d~~v~i~d~~~~~~~~~~~~h~---~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~  275 (340)
T d1tbga_         203 AC----DASAKLWDVREGMCRQTFTGHE---SDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS  275 (340)
T ss_dssp             ET----TTEEEEEETTTTEEEEEECCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred             ec----CceEEEEECCCCcEEEEEeCCC---CCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence            76    6679999999999999999887   8999999999999999999999999999999999888876666677899


Q ss_pred             EEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccc
Q 001310          628 ICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAE  707 (1103)
Q Consensus       628 v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d  707 (1103)
                      ++|+|++++|++|+.||.|++||+.+++.+..+.+|...|++++|+                      |++.++++++.|
T Consensus       276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s----------------------~d~~~l~s~s~D  333 (340)
T d1tbga_         276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT----------------------DDGMAVATGSWD  333 (340)
T ss_dssp             EEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEC----------------------TTSSCEEEEETT
T ss_pred             EEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEe----------------------CCCCEEEEEccC
Confidence            9999999999999999999999999999999999999999999997                      788999999999


Q ss_pred             ccccccc
Q 001310          708 NKSEVEK  714 (1103)
Q Consensus       708 ~~i~~w~  714 (1103)
                      |.|++||
T Consensus       334 g~v~iWd  340 (340)
T d1tbga_         334 SFLKIWN  340 (340)
T ss_dssp             SCEEEEC
T ss_pred             CEEEEeC
Confidence            9999997

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-31  Score=289.36  Aligned_cols=331  Identities=16%  Similarity=0.221  Sum_probs=263.0

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      ....++|+||++.|.+ +++++|+ +||+|+.||+|+|||+.+++++.+                   +.+|.+.|.+++
T Consensus         6 ~~~~~~l~GH~~~V~s-~~~~~g~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------~~~h~~~V~~v~   64 (342)
T d2ovrb2           6 LKSPKVLKGHDDHVIT-CLQFCGN-RIVSGSDDNTLKVWSAVTGKCLRT-------------------LVGHTGGVWSSQ   64 (342)
T ss_dssp             CCCCEEEECSTTSCEE-EEEEETT-EEEEEETTSCEEEEETTTCCEEEE-------------------CCCCSSCEEEEE
T ss_pred             CCcCEEECCcCCceEE-EEEECCC-EEEEEeCCCeEEEEECCCCCEEEE-------------------EeCCCCCEEEEE
Confidence            3456789999999965 4777888 689999999999999999998865                   778999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      |+|+  +|++|+.|+++++|+........   ....+...+......+  .  .++.+..|+.+.+|+..+++....+..
T Consensus        65 ~~~~--~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~  135 (342)
T d2ovrb2          65 MRDN--IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMG  135 (342)
T ss_dssp             EETT--EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEEC
T ss_pred             eCCC--ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeec
Confidence            9975  99999999999999998765333   3445555666655543  3  578888999999999999998888776


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      +.........    ....+++++.|+.|++||.........+..+...+..  +++++.++++++.    ++.|++||+.
T Consensus       136 ~~~~~~~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~----dg~i~~~d~~  205 (342)
T d2ovrb2         136 HVAAVRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSL----DTSIRVWDVE  205 (342)
T ss_dssp             CSSCEEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEET----TSCEEEEETT
T ss_pred             ccccceeecc----ccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeC----CCeEEEeecc
Confidence            6555444332    3457899999999999999988888888877666544  5567899999986    5669999999


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE  643 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d  643 (1103)
                      .++.+..+.+|.   ..+.++++++  +++++++.||.|++||....+....+..+.. ......++.++++++++++.|
T Consensus       206 ~~~~~~~~~~~~---~~v~~~~~~~--~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~s~s~D  279 (342)
T d2ovrb2         206 TGNCIHTLTGHQ---SLTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNK-HQSAVTCLQFNKNFVITSSDD  279 (342)
T ss_dssp             TCCEEEEECCCC---SCEEEEEEET--TEEEEEETTSCEEEEETTTCCEEEEECSTTS-CSSCEEEEEECSSEEEEEETT
T ss_pred             cceeeeEecccc---cceeEEecCC--CEEEEEcCCCEEEEEecccccccccccccce-eeeceeecccCCCeeEEEcCC
Confidence            999999998887   7888877764  6999999999999999999988888765432 123344555567899999999


Q ss_pred             CeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccc
Q 001310          644 NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSEC  723 (1103)
Q Consensus       644 g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~  723 (1103)
                      |.|++||+.+++.+..+...                                                            
T Consensus       280 g~i~iwd~~tg~~i~~~~~~------------------------------------------------------------  299 (342)
T d2ovrb2         280 GTVKLWDLKTGEFIRNLVTL------------------------------------------------------------  299 (342)
T ss_dssp             SEEEEEETTTCCEEEEEEEC------------------------------------------------------------
T ss_pred             CEEEEEECCCCCEEEEEecc------------------------------------------------------------
Confidence            99999999998776654311                                                            


Q ss_pred             eeeeccCccccccEEEEEEecCCcEEEEeecCce----EEEeecCC
Q 001310          724 QSLLLPSKVKANKISRLTYNNGGQAIFALASNGV----HLMWRWPR  765 (1103)
Q Consensus       724 ~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~----i~vw~~~~  765 (1103)
                           ...+|...|.+++|+|++..+++++.||+    +++||++.
T Consensus       300 -----~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         300 -----ESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             -----TTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred             -----cCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCCC
Confidence                 01236678899999999998999888875    88888753

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=100.00  E-value=6.7e-31  Score=284.40  Aligned_cols=293  Identities=12%  Similarity=0.094  Sum_probs=227.2

Q ss_pred             CeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceE
Q 001310          610 VQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVS  689 (1103)
Q Consensus       610 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  689 (1103)
                      |+..+.+.+|  ...|.+++|+|+|++|++|+.||.|++||+.+++....+.                            
T Consensus         2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~----------------------------   51 (299)
T d1nr0a2           2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFP----------------------------   51 (299)
T ss_dssp             TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSS----------------------------
T ss_pred             CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEc----------------------------
Confidence            5667777776  4579999999999999999999999999998876554332                            


Q ss_pred             ecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccc
Q 001310          690 VNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLT  769 (1103)
Q Consensus       690 ~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~  769 (1103)
                                                               ..|...|.+++|+|+++ +++++.|+.+++|+.......
T Consensus        52 -----------------------------------------~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~   89 (299)
T d1nr0a2          52 -----------------------------------------DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVD   89 (299)
T ss_dssp             -----------------------------------------CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSC
T ss_pred             -----------------------------------------CCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccc
Confidence                                                     12667788999999987 566778899999987543210


Q ss_pred             cccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEE
Q 001310          770 LSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSL  849 (1103)
Q Consensus       770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l  849 (1103)
                      .                 .. ..     ...+...+.++++++++++++++.++.+.+|+...  .....  ....++++
T Consensus        90 ~-----------------~~-~~-----~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~  142 (299)
T d1nr0a2          90 S-----------------SK-AV-----ANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCV  142 (299)
T ss_dssp             T-----------------TS-CC-----EEECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEE
T ss_pred             c-----------------cc-cc-----ccccccccccccccccccccccccccccccccccc--ccccc--cccccccc
Confidence            0                 00 00     00266788999999999999999999999999653  22222  34567899


Q ss_pred             EEcCCCCCEEEEEeCCCeEEEEEcCCceeEE-EeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeec
Q 001310          850 AFNPHDNNVIAIGMDDSTILIYNARSSEVIS-KLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQT  928 (1103)
Q Consensus       850 ~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~-~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~  928 (1103)
                      +|+| ++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+.|++||+.++....  ....
T Consensus       143 ~~s~-~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~--~~~~  219 (299)
T d1nr0a2         143 ALSN-DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELA--HTNS  219 (299)
T ss_dssp             EECT-TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEES--CCCC
T ss_pred             cccc-ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc--cccc
Confidence            9999 89999999999999999999877543 345699999999999999999999999999999998765322  2333


Q ss_pred             CCCcccCCCCceEEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEe-eCCC-CcCeEEEEEccCCCEEEEEecCCcEEEE
Q 001310          929 PDGVMTLAPSETHIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQW-FPIS-SVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1103)
Q Consensus       929 ~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~-~~~h-~~~v~~l~fs~dg~~l~t~~~dg~v~vW 1005 (1103)
                      ..+|.   ..|.+++|+|++++|+++ .|+.|++||+.++...... ...| ...|..+. ++++++|++++.|++|++|
T Consensus       220 ~~~h~---~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~l~s~s~D~~i~iW  295 (299)
T d1nr0a2         220 WTFHT---AKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVI-WLNETTIVSAGQDSNIKFW  295 (299)
T ss_dssp             CCCCS---SCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEE-EEETTEEEEEETTSCEEEE
T ss_pred             ccccc---cccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEE-ECCCCEEEEEeCCCEEEEE
Confidence            44444   389999999999999995 7899999999876543322 2333 45666664 5677899999999999999


Q ss_pred             eCC
Q 001310         1006 EAS 1008 (1103)
Q Consensus      1006 d~~ 1008 (1103)
                      |+.
T Consensus       296 dl~  298 (299)
T d1nr0a2         296 NVP  298 (299)
T ss_dssp             ECC
T ss_pred             ecc
Confidence            984

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.3e-30  Score=287.82  Aligned_cols=321  Identities=20%  Similarity=0.292  Sum_probs=248.2

Q ss_pred             ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeE
Q 001310          432 RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKI  511 (1103)
Q Consensus       432 ~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i  511 (1103)
                      +....++||.+.|.+ +++++|+  +|+||+.||+|+|||+.++++++++.+|...|.++++++    .+|++++.|+.+
T Consensus         7 ~~~~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~   79 (342)
T d2ovrb2           7 KSPKVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTL   79 (342)
T ss_dssp             CCCEEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCE
T ss_pred             CcCEEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceecccc
Confidence            344478999999865 4677888  899999999999999999999999999999999999953    389999999999


Q ss_pred             EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCC
Q 001310          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKD  591 (1103)
Q Consensus       512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~  591 (1103)
                      ++|+................+......  ...+..+..    ++.+.+|+..+++....+....   ....  ...+...
T Consensus        80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~---~~~~--~~~~~~~  148 (342)
T d2ovrb2          80 KVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHV---AAVR--CVQYDGR  148 (342)
T ss_dssp             EEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCS---SCEE--EEEECSS
T ss_pred             cccccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeeccc---ccce--eeccccc
Confidence            999998877777766666666555443  345555544    6679999999998887776654   2222  3345567


Q ss_pred             EEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeE
Q 001310          592 QILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLS  671 (1103)
Q Consensus       592 ~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~  671 (1103)
                      .+++++.|+.|++||......+..+..+.    .....+++++.++++++.||.|++||+..++.+.....         
T Consensus       149 ~~~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~---------  215 (342)
T d2ovrb2         149 RVVSGAYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG---------  215 (342)
T ss_dssp             CEEEEETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECC---------
T ss_pred             eeeeecCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccceeeeEecc---------
Confidence            88999999999999999999888887653    35666777899999999999999999876644332221         


Q ss_pred             EecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEE
Q 001310          672 VNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFA  751 (1103)
Q Consensus       672 ~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~  751 (1103)
                                                                                                      
T Consensus       216 --------------------------------------------------------------------------------  215 (342)
T d2ovrb2         216 --------------------------------------------------------------------------------  215 (342)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             eecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEc
Q 001310          752 LASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIV  830 (1103)
Q Consensus       752 ~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~  830 (1103)
                                                                       |...+.+++++  ++++++++ |+.|++||.
T Consensus       216 -------------------------------------------------~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~  244 (342)
T d2ovrb2         216 -------------------------------------------------HQSLTSGMELK--DNILVSGNADSTVKIWDI  244 (342)
T ss_dssp             -------------------------------------------------CCSCEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred             -------------------------------------------------cccceeEEecC--CCEEEEEcCCCEEEEEec
Confidence                                                             33334443333  34566655 567777777


Q ss_pred             CCceeeEEecC---CCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEec-----cCCCCEEEEEEccCCCEEE
Q 001310          831 MTFKTILTIMP---PSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLE-----GHSKRVTGLVFSDALNILV  902 (1103)
Q Consensus       831 ~~~~~~~~~~~---~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~-----~h~~~V~~l~~s~dg~~l~  902 (1103)
                      ...+....+..   |...+.++++++   +++++|+.||+|++||+.+++.+..+.     +|.+.|++++|+|++.+||
T Consensus       245 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la  321 (342)
T d2ovrb2         245 KTGQCLQTLQGPNKHQSAVTCLQFNK---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCA  321 (342)
T ss_dssp             TTCCEEEEECSTTSCSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEE
T ss_pred             ccccccccccccceeeeceeecccCC---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEE
Confidence            76666666554   445667777754   599999999999999999999888774     5788999999999999999


Q ss_pred             EEeCCCe----EEEEEcCC
Q 001310          903 SSGGDAQ----IFVWDVDG  917 (1103)
Q Consensus       903 s~s~dg~----I~iwd~~~  917 (1103)
                      +|+.||+    |++||++.
T Consensus       322 ~g~~dGt~~~~l~~~Df~~  340 (342)
T d2ovrb2         322 VGSRNGTEETKLLVLDFDV  340 (342)
T ss_dssp             EECSSSSSCCEEEEEECCC
T ss_pred             EEeCCCCCeeEEEEEeCCC
Confidence            9999985    99999975

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=100.00  E-value=4.7e-31  Score=294.93  Aligned_cols=304  Identities=13%  Similarity=0.136  Sum_probs=235.9

Q ss_pred             CccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe--eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEE
Q 001310          529 GLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA--IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWD  606 (1103)
Q Consensus       529 ~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd  606 (1103)
                      ..+|++++|+|||++|++++.    ++.|++||..+++  .+..+.+|.   +.|.+++|+|++++|++++.|++|++||
T Consensus         7 ~~pIt~~~~s~dg~~la~~~~----~~~i~iw~~~~~~~~~~~~l~gH~---~~V~~l~fsp~~~~l~s~s~D~~i~vWd   79 (371)
T d1k8kc_           7 VEPISCHAWNKDRTQIAICPN----NHEVHIYEKSGNKWVQVHELKEHN---GQVTGVDWAPDSNRIVTCGTDRNAYVWT   79 (371)
T ss_dssp             SSCCCEEEECTTSSEEEEECS----SSEEEEEEEETTEEEEEEEEECCS---SCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             CCCeEEEEECCCCCEEEEEeC----CCEEEEEECCCCCEEEEEEecCCC---CCEEEEEECCCCCEEEEEECCCeEEEEe
Confidence            357999999999999999875    5679999998775  566677877   8999999999999999999999999999


Q ss_pred             CCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCC
Q 001310          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1103)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  686 (1103)
                      +.++.....+....+...|.+++|+|+++.+++++.|+.+++|+...........                         
T Consensus        80 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~-------------------------  134 (371)
T d1k8kc_          80 LKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCK-------------------------  134 (371)
T ss_dssp             EETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEE-------------------------
T ss_pred             ecccccccccccccccccccccccccccccceeecccCcceeeeeeccccccccc-------------------------
Confidence            9988777666555556679999999999999999999999999877543221110                         


Q ss_pred             ceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCC
Q 001310          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRN  766 (1103)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~  766 (1103)
                                                               .....|...|.+++|+|++++|++++.||.+++|+....
T Consensus       135 -----------------------------------------~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~  173 (371)
T d1k8kc_         135 -----------------------------------------HIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIK  173 (371)
T ss_dssp             -----------------------------------------EECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCT
T ss_pred             -----------------------------------------ccccccccccccccccccccceeccccCcEEEEEeeccC
Confidence                                                     001236678899999999999999999999999997654


Q ss_pred             ccccccccccccCCeeecCC--CCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCC
Q 001310          767 DLTLSTEATTKVPPRLYQPR--HGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPS  843 (1103)
Q Consensus       767 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~  843 (1103)
                      ......      ....|+..  .+..+..    ..+|...|.+++|+|++++|++++ |+.|++||+.+++.+..+..|.
T Consensus       174 ~~~~~~------~~~~~~~~~~~~~~~~~----~~~~~~~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  243 (371)
T d1k8kc_         174 EVEERP------APTPWGSKMPFGELMFE----SSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASET  243 (371)
T ss_dssp             TTSCCC------CCBTTBSCCCTTCEEEE----CCCCSSCEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEECSS
T ss_pred             cccccc------ccccccccccceeeeee----ccCccCcEEEEEeecccccccccccCCcceEEeeecccceeeeeccc
Confidence            321111      11112222  1222222    225889999999999999999987 7999999999999999999999


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCC--ceeE---------------------------------------EEe
Q 001310          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARS--SEVI---------------------------------------SKL  882 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~--~~~~---------------------------------------~~l  882 (1103)
                      .+|.+++|+| ++++|++|. |+.+++|....  +...                                       ...
T Consensus       244 ~~v~s~~fs~-d~~~la~g~-d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  321 (371)
T d1k8kc_         244 LPLLAVTFIT-ESSLVAAGH-DCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLD  321 (371)
T ss_dssp             CCEEEEEEEE-TTEEEEEET-TSSCEEEEEETTTTEEEECCCCCCC--------CHHHHHHHCCCCC---------CCCS
T ss_pred             ccceeeeecC-CCCEEEEEc-CCceEEEEeeCCCceEEEeeeecCccccccccccceeeEecccceeEEeccccccceec
Confidence            9999999999 888887665 67666655432  2110                                       000


Q ss_pred             ccCCCCEEEEEEccCC----CEEEEEeCCCeEEEEEcCC
Q 001310          883 EGHSKRVTGLVFSDAL----NILVSSGGDAQIFVWDVDG  917 (1103)
Q Consensus       883 ~~h~~~V~~l~~s~dg----~~l~s~s~dg~I~iwd~~~  917 (1103)
                      ..|.+.|+++++.+.+    ..++|+|.||.|++||+++
T Consensus       322 ~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~  360 (371)
T d1k8kc_         322 SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS  360 (371)
T ss_dssp             SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHH
T ss_pred             ccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCc
Confidence            1388899999998755    4699999999999999976

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=3.1e-30  Score=282.04  Aligned_cols=290  Identities=12%  Similarity=0.173  Sum_probs=224.9

Q ss_pred             CceEEEecCCCceEEEEEcC-CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCC-CccEEEEEECC--CCCEE
Q 001310          336 SPMSMDFHPVQHTLLLVGTN-VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDP-GVSVNRVVWSP--DGSLL  411 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~-d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~~~~sp--dg~~l  411 (1103)
                      .+++++|+|+|+. +|.++. +..|+.||.........                 ..+.+| ...|++++|+|  +|++|
T Consensus        19 ~~t~l~~~~~~~~-la~~~~~~~~i~~~~~~~~~~~~~-----------------~~~~gh~~~~v~~v~fsP~~~g~~l   80 (325)
T d1pgua1          19 FTTHLSYDPTTNA-IAYPCGKSAFVRCLDDGDSKVPPV-----------------VQFTGHGSSVVTTVKFSPIKGSQYL   80 (325)
T ss_dssp             CCCCCEEETTTTE-EEEEETTEEEEEECCSSCCSSCSE-----------------EEECTTTTSCEEEEEECSSTTCCEE
T ss_pred             CeEEEEECCCCCE-EEEEeCCCEEEEEEeCCCCCccce-----------------EEEeCCCCCCEEEEEEeeCCCCCEE
Confidence            5689999999995 555543 33456666544432211                 115566 56899999998  67899


Q ss_pred             EEEeCCCeEEEEEecCCCccccc-----eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCC
Q 001310          412 GVAYSKHIVQLYAYHGGSDARQQ-----LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGA  486 (1103)
Q Consensus       412 as~~~d~~i~iwd~~~~~~~~~~-----~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~  486 (1103)
                      |+|+.||+|+|||+..++.....     ..+..|.++|.+++|+++++.+..++++.++.+++|+..+++++..+.+|..
T Consensus        81 asgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~  160 (325)
T d1pgua1          81 CSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQ  160 (325)
T ss_dssp             EEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSS
T ss_pred             EEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeeccc
Confidence            99999999999999876654322     1345688899999999999953333445678899999999999999999999


Q ss_pred             ceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec---CCCccEEEEEEccC-CCEEEEEecCCCCceeEEEEeC
Q 001310          487 PVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD---APGLGCTRMAYSAN-GRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       487 ~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~---~~~~~i~~~~~s~d-g~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      .|.+++|++.. ..++++++.|+.+++||....+......   .+...|.+++|+|+ +.++++++.    ++.|++||+
T Consensus       161 ~v~~~~~~~~~-~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd~  235 (325)
T d1pgua1         161 RINACHLKQSR-PMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFDG  235 (325)
T ss_dssp             CEEEEEECSSS-SCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEET
T ss_pred             ccccccccccc-cceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeeee
Confidence            99999997653 2467889999999999998776655443   45567999999997 678888876    566999999


Q ss_pred             CCCeeEEEEecccccCCceEEEEEc---CCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecC-CCEEE
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFD---TAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKN-GTLLA  638 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~  638 (1103)
                      ++++.+..+.+|.   ..+..+.|+   +++++|++++.|+.|+|||+.+++++..+..+.+...+..+++.+. +.+|+
T Consensus       236 ~~~~~~~~l~~~~---~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  312 (325)
T d1pgua1         236 KSGEFLKYIEDDQ---EPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRII  312 (325)
T ss_dssp             TTCCEEEECCBTT---BCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEE
T ss_pred             ccccccccccccc---cccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEE
Confidence            9999999998877   444333333   6789999999999999999999999999887766544555555543 34889


Q ss_pred             EEECCCeEEEEEc
Q 001310          639 VIANENRIKILET  651 (1103)
Q Consensus       639 ~~~~dg~i~iw~~  651 (1103)
                      +++.||.|++||+
T Consensus       313 s~s~dg~i~vwdl  325 (325)
T d1pgua1         313 SLSLDGTLNFYEL  325 (325)
T ss_dssp             EEETTSCEEEEET
T ss_pred             EEECCCEEEEEEC
Confidence            9999999999985

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=8.7e-30  Score=278.51  Aligned_cols=287  Identities=14%  Similarity=0.153  Sum_probs=219.9

Q ss_pred             ccEEEEEEecCCcEEEEeecCc-eEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCC-CCCeeEEEEec
Q 001310          735 NKISRLTYNNGGQAIFALASNG-VHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNS-QEAVPCFALSK  812 (1103)
Q Consensus       735 ~~i~~~~~s~~g~~l~~~~~dg-~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~s~  812 (1103)
                      ..+.+++|+|+++.++.++.+. .++.|+......                    .....  +.  +| ...|++++|+|
T Consensus        18 ~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~--------------------~~~~~--~~--gh~~~~v~~v~fsP   73 (325)
T d1pgua1          18 NFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV--------------------PPVVQ--FT--GHGSSVVTTVKFSP   73 (325)
T ss_dssp             TCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS--------------------CSEEE--EC--TTTTSCEEEEEECS
T ss_pred             CCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc--------------------cceEE--Ee--CCCCCCEEEEEEee
Confidence            3456889999999998876553 345554322111                    00111  11  34 56899999998


Q ss_pred             --CCCEEEEEc-CCeEEEEEcCCceee--------EEecCCCCCeeEEEEcCCCCCEEEEEeC--CCeEEEEEcCCceeE
Q 001310          813 --NDAYLFSAS-GGVISLYIVMTFKTI--------LTIMPPSPTATSLAFNPHDNNVIAIGMD--DSTILIYNARSSEVI  879 (1103)
Q Consensus       813 --d~~~l~~~~-dg~i~iwd~~~~~~~--------~~~~~~~~~i~~l~~s~~d~~~lasg~~--dg~v~iwd~~~~~~~  879 (1103)
                        ++++|++++ ||+|++||+..++..        ..+..|..+|.+++|++ ++++|++++.  ++.+.+|+..+++.+
T Consensus        74 ~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~  152 (325)
T d1pgua1          74 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSL  152 (325)
T ss_dssp             STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEE
T ss_pred             CCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccc
Confidence              678999997 899999999754332        23456888999999999 8888887754  678999999999999


Q ss_pred             EEeccCCCCEEEEEEccCCCE-EEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC-CCEEEEE-eC
Q 001310          880 SKLEGHSKRVTGLVFSDALNI-LVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD-QTRFLLV-HE  956 (1103)
Q Consensus       880 ~~l~~h~~~V~~l~~s~dg~~-l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d-g~~l~~~-~d  956 (1103)
                      ..+.+|...|.+++|+|++.+ +++++.|+.|++||+..++...  ......++.   ..|.+++|+|| +.+++++ .|
T Consensus       153 ~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~--~~~~~~~~~---~~v~~v~~~pd~~~~l~s~~~d  227 (325)
T d1pgua1         153 GEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSA--SDRTHHKQG---SFVRDVEFSPDSGEFVITVGSD  227 (325)
T ss_dssp             EECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEE--EECSSSCTT---CCEEEEEECSTTCCEEEEEETT
T ss_pred             eeeeecccccccccccccccceEEEeecccccccccccccccce--ecccccCCC---CccEEeeeccccceeccccccc
Confidence            999999999999999999875 7789999999999998865433  233333333   37999999997 5777774 89


Q ss_pred             CeEEEEECCCceEEEEeeCCCCcCeEEEEEc---cCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceee
Q 001310          957 THLAIYEAEELTCLKQWFPISSVPISQATFS---CDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILC 1033 (1103)
Q Consensus       957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs---~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1033 (1103)
                      +.|++||+.+++.+.. +.+|..++.++.|+   +||++|++++.|++|+|||+.+++.+..+...              
T Consensus       228 ~~i~iwd~~~~~~~~~-l~~~~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~--------------  292 (325)
T d1pgua1         228 RKISCFDGKSGEFLKY-IEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLD--------------  292 (325)
T ss_dssp             CCEEEEETTTCCEEEE-CCBTTBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECC--------------
T ss_pred             cceeeeeecccccccc-ccccccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEec--------------
Confidence            9999999999999887 55788788777776   79999999999999999999999988777622              


Q ss_pred             EeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1034 FCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1034 ~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                         ++...+..+++.+.++  .+|++++.||+|++||+
T Consensus       293 ---~~~~~~~~~~~~~~~~--~~l~s~s~dg~i~vwdl  325 (325)
T d1pgua1         293 ---KQQLGNQQVGVVATGN--GRIISLSLDGTLNFYEL  325 (325)
T ss_dssp             ---TTCGGGCEEEEEEEET--TEEEEEETTSCEEEEET
T ss_pred             ---CCcccCeEEEEEECCC--CEEEEEECCCEEEEEEC
Confidence               1222233445555543  57999999999999996

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.96  E-value=3.5e-27  Score=267.03  Aligned_cols=368  Identities=11%  Similarity=0.043  Sum_probs=263.6

Q ss_pred             eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecC
Q 001310          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHG  427 (1103)
Q Consensus       348 ~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~  427 (1103)
                      .++++.+.||+|.|||..+++++..                   +..| ..+..++|||||++|++++.|++|.+||+.+
T Consensus        33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t   92 (432)
T d1qksa2          33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM   92 (432)
T ss_dssp             EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred             EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence            3578999999999999999999876                   3334 4699999999999999999999999999988


Q ss_pred             CCccc--cceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEE
Q 001310          428 GSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI  505 (1103)
Q Consensus       428 ~~~~~--~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~  505 (1103)
                      ++...  ......+|.+.+.+.+|+|||++ ++++++.+++|++||..+++++..+..|...+....+.+.         
T Consensus        93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~---------  162 (432)
T d1qksa2          93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPE---------  162 (432)
T ss_dssp             SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESC---------
T ss_pred             CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCC---------
Confidence            76322  22223467777888899999995 4578889999999999999999998877655544433221         


Q ss_pred             ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEE
Q 001310          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1103)
Q Consensus       506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1103)
                                              .....+.++|+|..++....   .++.|.+||..+++.........  ...+..++
T Consensus       163 ------------------------~~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~--g~~~~~~~  213 (432)
T d1qksa2         163 ------------------------PRVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISA--ERFLHDGG  213 (432)
T ss_dssp             ------------------------CCEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEEC--CSSEEEEE
T ss_pred             ------------------------CceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcc--cCccccce
Confidence                                    23445778999998876653   25679999998877655443322  25688999


Q ss_pred             EcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCC---CCCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeEec
Q 001310          586 FDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGG---LPENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAA  660 (1103)
Q Consensus       586 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---~~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~  660 (1103)
                      |+|+|+++++++ .++.+.++|..+++.+..+.....   ........+...+...++.. .++.+.+|.......    
T Consensus       214 ~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~----  289 (432)
T d1qksa2         214 LDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH----  289 (432)
T ss_dssp             ECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC----
T ss_pred             ECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc----
Confidence            999999888866 556899999999988877754321   11222333333333333332 255666665432210    


Q ss_pred             cccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEE
Q 001310          661 GVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRL  740 (1103)
Q Consensus       661 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~  740 (1103)
                                                                                            ..+...+...
T Consensus       290 ----------------------------------------------------------------------~~~~~~v~~~  299 (432)
T d1qksa2         290 ----------------------------------------------------------------------PDNAWKILDS  299 (432)
T ss_dssp             ----------------------------------------------------------------------TTTBTSEEEE
T ss_pred             ----------------------------------------------------------------------cccccEEEEE
Confidence                                                                                  1144567777


Q ss_pred             EEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEE
Q 001310          741 TYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSA  820 (1103)
Q Consensus       741 ~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~  820 (1103)
                      .+++++..+++++.++..++|......                                .+......+++ ||++.++++
T Consensus       300 ~~~~~g~~~~~~s~p~~~~lw~~~~~~--------------------------------~~~~~~~sv~v-pDg~~la~~  346 (432)
T d1qksa2         300 FPALGGGSLFIKTHPNSQYLYVDATLN--------------------------------PEAEISGSVAV-FDIKAMTGD  346 (432)
T ss_dssp             EECSCSCCCCEECCTTCSEEEEECTTC--------------------------------SSHHHHTCEEE-EEGGGCCCS
T ss_pred             EEcCCCCeEEEEecCCccceeecccCC--------------------------------CCCCeeeEEEE-Eechhhccc
Confidence            888888888888888888887633211                                13333344555 899999999


Q ss_pred             c-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEe-----CCCeEEEEEcCCceeEEEeccC
Q 001310          821 S-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGM-----DDSTILIYNARSSEVISKLEGH  885 (1103)
Q Consensus       821 ~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~-----~dg~v~iwd~~~~~~~~~l~~h  885 (1103)
                      + |+.+++|++.++..   +..|...+.+++||| ||++++++.     .+|.|.|||..++++...+++.
T Consensus       347 s~d~~~k~w~~~~~~~---l~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~  413 (432)
T d1qksa2         347 GSDPEFKTLPIAEWAG---ITEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE  413 (432)
T ss_dssp             SSCCCEEEECHHHHHT---CCSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred             ccCCceEecccccccc---cCCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence            8 78899999876643   335677899999999 888775553     4689999999999998888753

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.96  E-value=4.3e-27  Score=252.36  Aligned_cols=270  Identities=11%  Similarity=0.133  Sum_probs=213.9

Q ss_pred             cceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEE
Q 001310          324 KTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVV  403 (1103)
Q Consensus       324 ~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~  403 (1103)
                      .+.+++|+||.++|++++|+|     |++|+.||+|++||+.++                        ..+|...|.+++
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~   53 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLD   53 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEE
T ss_pred             cceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEE
Confidence            357889999999999999997     799999999999998764                        336999999999


Q ss_pred             ECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec
Q 001310          404 WSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG  483 (1103)
Q Consensus       404 ~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~  483 (1103)
                      |++++ .+++++.|++|++|++...+          ....+.++++++++.  .++++ .++.+.+|+..+++.+..+..
T Consensus        54 ~~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~  119 (287)
T d1pgua2          54 NSKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVLT-NDDDLLILQSFTGDIIKSVRL  119 (287)
T ss_dssp             CCSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEEE-TTSEEEEEETTTCCEEEEEEC
T ss_pred             ecCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEEe-ecccceeeeccceeeeeeccc
Confidence            99765 57889999999999987532          223467888999887  45554 466789999999999888864


Q ss_pred             CCCceEEEEeeecCCccEEEEEECC-CeEEEEEcCCCCeeEEec-CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEe
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVD-GKIKAWLYDSLGARVDYD-APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWN  561 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~d-g~i~iwd~~~~~~~~~~~-~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd  561 (1103)
                      + ..+.++.  +  ++..+++++.+ +.+++|++.......... .+...+.+++|+|++.+|++++.    ++.|++||
T Consensus       120 ~-~~~~~~~--~--~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d  190 (287)
T d1pgua2         120 N-SPGSAVS--L--SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYD  190 (287)
T ss_dssp             S-SCEEEEE--E--CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEE
T ss_pred             c-ceeeeee--c--cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----ccccccee
Confidence            4 3444443  3  34566666666 579999987766555544 35668999999999999999976    55699999


Q ss_pred             CCCCeeEEE-EecccccCCceEEEEEcCC----------CCEEEEEeCCCcEEEEECCC-CeeEEEEcCCCCCCCCceEE
Q 001310          562 ESEGAIKRT-YQGLQLQHNSVSVVHFDTA----------KDQILAAGDDHVIKIWDMNK-VQLLTTIDAGGGLPENPRIC  629 (1103)
Q Consensus       562 ~~~~~~~~~-~~~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~  629 (1103)
                      +.+++.... +.+|.   ..|.+++|+|.          +.++++|+.|++|++||+.+ ++.+..+..|  ...|.+++
T Consensus       191 ~~~~~~~~~~~~~h~---~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~  265 (287)
T d1pgua2         191 LQSREVKTSRWAFRT---SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLL  265 (287)
T ss_dssp             TTTTEEEECCSCCCS---SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEE
T ss_pred             ecccccccccccccc---cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEE
Confidence            999887543 45555   88999999874          46899999999999999976 4556666555  45699999


Q ss_pred             EecCCCEEEEEECCCeEEEEEc
Q 001310          630 FNKNGTLLAVIANENRIKILET  651 (1103)
Q Consensus       630 ~s~~g~~l~~~~~dg~i~iw~~  651 (1103)
                      |+|++ .+++++.|+.|++|++
T Consensus       266 ~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         266 WETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEETT-EEEEEETTSCEEEEEE
T ss_pred             ECCCC-EEEEEECCCeEEEEEE
Confidence            99986 6889999999999985

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=1.2e-26  Score=248.94  Aligned_cols=271  Identities=11%  Similarity=0.089  Sum_probs=218.1

Q ss_pred             CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccc
Q 001310          654 SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVK  733 (1103)
Q Consensus       654 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~  733 (1103)
                      .++++.+.+|...|++++++                      |    |++++.||+|++|++....           .+|
T Consensus         3 ~~~i~~l~gH~~~I~~l~~s----------------------~----l~sgs~Dg~v~~Wd~~~~~-----------~~h   45 (287)
T d1pgua2           3 DEVLKTISGHNKGITALTVN----------------------P----LISGSYDGRIMEWSSSSMH-----------QDH   45 (287)
T ss_dssp             EEEEEEECCCSSCEEEEETT----------------------T----TEEEETTSCEEETTTTEEE-----------CCC
T ss_pred             cceeEEECCCCCceEEEEEC----------------------c----EEEEeCCCeEEEEECCCCC-----------CCC
Confidence            35778899999999999886                      3    8999999999999987432           248


Q ss_pred             cccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecC
Q 001310          734 ANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKN  813 (1103)
Q Consensus       734 ~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d  813 (1103)
                      ...|.++.+++++ .+++++.|+++++|++....                                 ....+.+++++++
T Consensus        46 ~~~V~~~~~~~~~-~~~s~s~D~~v~~w~~~~~~---------------------------------~~~~~~~~~~~~~   91 (287)
T d1pgua2          46 SNLIVSLDNSKAQ-EYSSISWDDTLKVNGITKHE---------------------------------FGSQPKVASANND   91 (287)
T ss_dssp             CSCEEEEECCSTT-CCEEEETTTEEEETTEEEEE---------------------------------CSSCEEEEEECSS
T ss_pred             CCCEEEEEecCCC-eEEEEeeccccccccccccc---------------------------------cccceeeeeeccC
Confidence            8899999998765 47899999999999854321                                 3445778899999


Q ss_pred             CCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCC-eEEEEEcCCceeEEEec-cCCCCEEE
Q 001310          814 DAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDS-TILIYNARSSEVISKLE-GHSKRVTG  891 (1103)
Q Consensus       814 ~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg-~v~iwd~~~~~~~~~l~-~h~~~V~~  891 (1103)
                      +..++++.++.+.+|+..+++.+..+..+ ..+  .++++ ++..+++++.++ .+++|++...+....+. .|.+.+++
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~-~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~  167 (287)
T d1pgua2          92 GFTAVLTNDDDLLILQSFTGDIIKSVRLN-SPG--SAVSL-SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSY  167 (287)
T ss_dssp             SEEEEEETTSEEEEEETTTCCEEEEEECS-SCE--EEEEE-CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEE
T ss_pred             CceEEEeecccceeeeccceeeeeecccc-cee--eeeec-cCcceeeeccccceeeeeeccccceeeeeeeccCCceeE
Confidence            99999999999999999999988887643 333  45666 566777777665 79999998776655554 48889999


Q ss_pred             EEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC----------CCEEEEE-eCCeEE
Q 001310          892 LVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD----------QTRFLLV-HETHLA  960 (1103)
Q Consensus       892 l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d----------g~~l~~~-~d~~v~  960 (1103)
                      ++|+|++++|++++.||.|++||+.+++...    ....+|..   .|.+++|+|+          +.+++++ .|++|+
T Consensus       168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~----~~~~~h~~---~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~  240 (287)
T d1pgua2         168 ISISPSETYIAAGDVMGKILLYDLQSREVKT----SRWAFRTS---KINAISWKPAEKGANEEEIEEDLVATGSLDTNIF  240 (287)
T ss_dssp             EEECTTSSEEEEEETTSCEEEEETTTTEEEE----CCSCCCSS---CEEEEEECCCC------CCSCCEEEEEETTSCEE
T ss_pred             EEeccCccccccccccccccceeeccccccc----cccccccc---ccceeeecccccccccccCCCCeeEeecCCCeEE
Confidence            9999999999999999999999999866322    22344443   7999999875          4678885 889999


Q ss_pred             EEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeC
Q 001310          961 IYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEA 1007 (1103)
Q Consensus       961 iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~ 1007 (1103)
                      +||+.++........+|...|++++|++++ .|+|++.|++|++|++
T Consensus       241 iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i  286 (287)
T d1pgua2         241 IYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACIKRWNV  286 (287)
T ss_dssp             EEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred             EEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence            999987554445577999999999999987 5889999999999996

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.3e-25  Score=241.09  Aligned_cols=274  Identities=20%  Similarity=0.282  Sum_probs=220.5

Q ss_pred             eEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          327 AQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       327 ~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      ++...+|+..|+|++|  ||+ +||+|+.||+|+|||+.+++++.+                   +.+|.+.|.+++|  
T Consensus         8 i~~~~~~~~~V~c~~~--d~~-~l~sgs~Dg~i~vWd~~~~~~~~~-------------------l~~H~~~V~~v~~--   63 (293)
T d1p22a2           8 IHCRSETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKRI-------------------LTGHTGSVLCLQY--   63 (293)
T ss_dssp             EECCCSSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEEE-------------------ECCCSSCEEEEEC--
T ss_pred             EeccCCCCCCEEEEEE--cCC-EEEEEeCCCeEEEEECCCCcEEEE-------------------EecCCCCEeeeec--
Confidence            4556788899998765  787 699999999999999999998876                   7789999999887  


Q ss_pred             CCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce---eEEeec
Q 001310          407 DGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR---TYSFEG  483 (1103)
Q Consensus       407 dg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~---~~~~~~  483 (1103)
                      ++++|++|+.|+.|++|++..+....   ....+...  ...+.+...  .++++..++.+++||..+...   ...+..
T Consensus        64 ~~~~l~s~s~D~~i~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  136 (293)
T d1p22a2          64 DERVIITGSSDSTVRVWDVNTGEMLN---TLIHHCEA--VLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVG  136 (293)
T ss_dssp             CSSEEEEEETTSCEEEEESSSCCEEE---EECCCCSC--EEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECC
T ss_pred             ccceeecccccccccccccccccccc---cccccccc--ccccccccc--ceeecccccceeEeeccccccccccccccc
Confidence            67899999999999999999886443   22233322  233444555  689999999999999887654   345667


Q ss_pred             CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCC
Q 001310          484 HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNES  563 (1103)
Q Consensus       484 ~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~  563 (1103)
                      |...+..+.+.    ...+++++.|+.+++||..+.+....+..+...+..+.++  +.++++++.    ++.|++||+.
T Consensus       137 ~~~~v~~~~~~----~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~  206 (293)
T d1p22a2         137 HRAAVNVVDFD----DKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIE  206 (293)
T ss_dssp             CSSCEEEEEEE----TTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETT
T ss_pred             cccccccceec----ccccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecc
Confidence            88888877763    2478899999999999999999888888888888777664  568888876    5669999999


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCC---------CeeEEEEcCCCCCCCCceEEEecCC
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNK---------VQLLTTIDAGGGLPENPRICFNKNG  634 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~g  634 (1103)
                      ++..+..+.++.   ..+..  +.+++.+|++++.||.|++||+..         ...+..+..|  ...|.+++|+  +
T Consensus       207 ~~~~~~~~~~~~---~~v~~--~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--~~~V~~v~~d--~  277 (293)
T d1p22a2         207 CGACLRVLEGHE---ELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQFD--E  277 (293)
T ss_dssp             TCCEEEEECCCS---SCEEE--EECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEEC--S
T ss_pred             cceeeeeecccc---eeeee--ccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC--CCCEEEEEEc--C
Confidence            999999888877   66654  556788999999999999999743         3456677666  4468999985  6


Q ss_pred             CEEEEEECCCeEEEEE
Q 001310          635 TLLAVIANENRIKILE  650 (1103)
Q Consensus       635 ~~l~~~~~dg~i~iw~  650 (1103)
                      ++|++++.||+|++||
T Consensus       278 ~~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         278 FQIVSSSHDDTILIWD  293 (293)
T ss_dssp             SCEEECCSSSEEEEEC
T ss_pred             CEEEEEecCCEEEEeC
Confidence            7899999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=4e-27  Score=259.16  Aligned_cols=297  Identities=9%  Similarity=0.013  Sum_probs=216.9

Q ss_pred             ceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          325 TVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       325 ~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      ++++.+++|++.|++|+|||+|+ +||+|+.||+|+|||+.++.......                ...+|.++|.+++|
T Consensus         2 ~~v~~~~~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~~~----------------~~~~h~~~V~~v~f   64 (342)
T d1yfqa_           2 QIVQIEQAPKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVDLL----------------QSLRYKHPLLCCNF   64 (342)
T ss_dssp             EEEECSSCCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEEEE----------------EEEECSSCEEEEEE
T ss_pred             CeEEcCCCCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceEEE----------------EecCCCCCEEEEEE
Confidence            35788899999999999999998 79999999999999998775443211                13359999999999


Q ss_pred             CCC-CCEEEEEeCCCeEEEEEecCCCccccceEeccc-cccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE--
Q 001310          405 SPD-GSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAH-VGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS--  480 (1103)
Q Consensus       405 spd-g~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h-~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~--  480 (1103)
                      +|+ +.+|++|+.|++|++|++..+....   ....+ ........+.+++.  .+++++.|+++++||+.++.....  
T Consensus        65 ~~~~~~~l~sg~~d~~v~~w~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~  139 (342)
T d1yfqa_          65 IDNTDLQIYVGTVQGEILKVDLIGSPSFQ---ALTNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAV  139 (342)
T ss_dssp             EESSSEEEEEEETTSCEEEECSSSSSSEE---ECBSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEE
T ss_pred             eCCCCCEEEEcccccceeeeecccccccc---cccccccccccccccccccc--cccccccccccceeeccccccceeee
Confidence            986 5689999999999999998876443   22333 33444555666666  799999999999999875543322  


Q ss_pred             --eecCCCc--eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE---EecCCCccEEEEEEc-cCCCEEEEEecCCC
Q 001310          481 --FEGHGAP--VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYS-ANGRRLFSCGTSKE  552 (1103)
Q Consensus       481 --~~~~~~~--v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s-~dg~~l~~~~~~~~  552 (1103)
                        ...+...  .....+  ..++..+++++.|+.|++|++.......   ........+.+..+. .++..+++++.   
T Consensus       140 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~---  214 (342)
T d1yfqa_         140 KNLNSNNTKVKNKIFTM--DTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI---  214 (342)
T ss_dssp             EESCSSSSSSCCCEEEE--EECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET---
T ss_pred             cccccccccceeeeeee--eccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC---
Confidence              2223222  223333  3355789999999999999998765432   233334445555554 46777887765   


Q ss_pred             CceeEEEEeCCCCeeE------EE------EecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCC
Q 001310          553 GESFLVEWNESEGAIK------RT------YQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGG  620 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~------~~------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~  620 (1103)
                       ++.+.+|+.......      ..      ...+..+...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+.
T Consensus       215 -dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~  293 (342)
T d1yfqa_         215 -DGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN  293 (342)
T ss_dssp             -TSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS
T ss_pred             -CCeEEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC
Confidence             556888887643211      11      11122234678999999999999999999999999999999998876432


Q ss_pred             CCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          621 GLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       621 ~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                         ....++|+|+++++++++.|+.+++|...
T Consensus       294 ---~~~~~~~s~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         294 ---EDSVVKIACSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             ---SSEEEEEEECSSEEEEEEECTHHHHCSSS
T ss_pred             ---CCEEEEEEeCCCEEEEEEcCCcEEEeeee
Confidence               35678999999999999999888777543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.95  E-value=7.1e-26  Score=257.43  Aligned_cols=369  Identities=9%  Similarity=0.023  Sum_probs=249.5

Q ss_pred             CceEEEecCCCce-EEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          336 SPMSMDFHPVQHT-LLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       336 ~V~~v~~spdg~~-llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ......+++|.+. ++++++.||+|+|||+.+++.+.+                   +..| ..+..++|||||++|+++
T Consensus        20 ~p~~~~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~   79 (426)
T d1hzua2          20 RPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVI   79 (426)
T ss_dssp             SCSSCCSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEE
T ss_pred             CCCcccccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEE
Confidence            3344556676553 457788899999999999999876                   3345 469999999999999999


Q ss_pred             eCCCeEEEEEecCCCccc--cceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEE
Q 001310          415 YSKHIVQLYAYHGGSDAR--QQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLC  492 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~--~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~  492 (1103)
                      +.|++|++||+.+++...  ......+|...+.+++|+|||++ +++++..++.+++||..++.++..+.+|...+..+.
T Consensus        80 ~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~  158 (426)
T d1hzua2          80 GRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT  158 (426)
T ss_dssp             ETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred             eCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCcccee
Confidence            999999999999987432  12223467788889999999995 456667899999999999999999988877766655


Q ss_pred             eeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEE-EE
Q 001310          493 PHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKR-TY  571 (1103)
Q Consensus       493 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~-~~  571 (1103)
                      +.+.+.                                 ...+.+++++..++....   +.+.+.+++...+.... ..
T Consensus       159 ~~~~~~---------------------------------~~~i~~s~d~~~~~~~~~---~~~~i~~~~~~~~~~~~~~~  202 (426)
T d1hzua2         159 YHPEPR---------------------------------VAAIIASHEHPEFIVNVK---ETGKVLLVNYKDIDNLTVTS  202 (426)
T ss_dssp             EESCCC---------------------------------EEEEEECSSSSEEEEEET---TTTEEEEEECSSSSSCEEEE
T ss_pred             ecCCCc---------------------------------eeEEEECCCCCEEEEecC---CCCeEEEEEeccccceeeEE
Confidence            543221                                 222344555555554432   13345555555443222 22


Q ss_pred             ecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE---EEECCCeEE
Q 001310          572 QGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA---VIANENRIK  647 (1103)
Q Consensus       572 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~---~~~~dg~i~  647 (1103)
                      ..+.   ..+..+.|+|++++++++. .+..+.+++..+++.+................+...+...+   ....++.+.
T Consensus       203 ~~~~---~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~  279 (426)
T d1hzua2         203 IGAA---PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSIS  279 (426)
T ss_dssp             EECC---SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEE
T ss_pred             eccC---CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEE
Confidence            2333   6789999999999988865 56678999999999998887654433344444444332211   112244444


Q ss_pred             EEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeee
Q 001310          648 ILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLL  727 (1103)
Q Consensus       648 iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~  727 (1103)
                      +|+....                                                      .+.+|+             
T Consensus       280 ~~~~~~~------------------------------------------------------~~~~~~-------------  292 (426)
T d1hzua2         280 LIGTDPK------------------------------------------------------NHPQYA-------------  292 (426)
T ss_dssp             EEECCTT------------------------------------------------------TCTTTB-------------
T ss_pred             Eeecccc------------------------------------------------------cccccc-------------
Confidence            4433221                                                      111110             


Q ss_pred             ccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeE
Q 001310          728 LPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPC  807 (1103)
Q Consensus       728 ~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  807 (1103)
                                                                                  ++....  +.  +|...+..
T Consensus       293 ------------------------------------------------------------~~~~~~--l~--g~~~~v~~  308 (426)
T d1hzua2         293 ------------------------------------------------------------WKKVAE--LQ--GQGGGSLF  308 (426)
T ss_dssp             ------------------------------------------------------------TSEEEE--EE--CSSSCCCC
T ss_pred             ------------------------------------------------------------ceEeEE--Ee--cCCCceeE
Confidence                                                                        000111  00  36677778


Q ss_pred             EEEecCCCEEEEE-------c-CCeEEEEEcCCceeeEEe---------cCCCCCeeEEEEcCCCCCEEE-EE----eCC
Q 001310          808 FALSKNDAYLFSA-------S-GGVISLYIVMTFKTILTI---------MPPSPTATSLAFNPHDNNVIA-IG----MDD  865 (1103)
Q Consensus       808 l~~s~d~~~l~~~-------~-dg~i~iwd~~~~~~~~~~---------~~~~~~i~~l~~s~~d~~~la-sg----~~d  865 (1103)
                      ++|+||+++|++.       + +++|++||+.+++...++         ..+...+.+++||| ||++++ ++    +.+
T Consensus       309 v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~  387 (426)
T d1hzua2         309 IKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDS  387 (426)
T ss_dssp             EECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSC
T ss_pred             EEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCC
Confidence            8888888888852       2 578999999998776554         24556799999999 787664 32    467


Q ss_pred             CeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEE
Q 001310          866 STILIYNARSSEVISKLEGHSKRVTGLVFSDALNILV  902 (1103)
Q Consensus       866 g~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~  902 (1103)
                      |.|+|||..+++....+.++.      .++|+|++-+
T Consensus       388 ~~i~v~D~~T~k~~~~i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         388 SALVVVDDKTLKLKAVVKDPR------LITPTGKFNV  418 (426)
T ss_dssp             CEEEEEETTTTEEEEEECCTT------CCSEEEEEEH
T ss_pred             CeEEEEECCCCeEEEEECCCC------ccCCCceEeE
Confidence            899999999999999998775      4467887743

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=6.1e-26  Score=255.25  Aligned_cols=296  Identities=12%  Similarity=0.082  Sum_probs=213.8

Q ss_pred             eeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEE---
Q 001310          326 VAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRV---  402 (1103)
Q Consensus       326 ~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~---  402 (1103)
                      .....++|.++|.++++++  + ++++|+.|++|+|||..+.+.......             ......|...+..+   
T Consensus         6 ~~~~~~~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~   69 (393)
T d1sq9a_           6 TANAGKAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDK-------------SYSHFVHKSGLHHVDVL   69 (393)
T ss_dssp             EEEESSCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGG-------------EEEEECCTTCEEEEEEE
T ss_pred             eeecCCcccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCcccce-------------eEeeeeccCCceEeeeE
Confidence            3456789999999999976  4 588999999999999877653221000             00012244333322   


Q ss_pred             ---EECC-CCCEEEEEeCCCeEEEEEecCCCccccceE-------eccccccEEEEEEecCCC---ceEEEEEcCCCceE
Q 001310          403 ---VWSP-DGSLLGVAYSKHIVQLYAYHGGSDARQQLE-------IDAHVGNVNDLAFSAPCK---QISVITCGDDKTIK  468 (1103)
Q Consensus       403 ---~~sp-dg~~las~~~d~~i~iwd~~~~~~~~~~~~-------l~~h~~~v~~~~~s~d~~---~~~l~s~~~d~~i~  468 (1103)
                         ..+. ++.++++++.||.|++|++..+........       ...+...+..++|.+++.   ..++++++.||+++
T Consensus        70 ~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~  149 (393)
T d1sq9a_          70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTY  149 (393)
T ss_dssp             EEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEE
T ss_pred             eeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEE
Confidence               2222 345788999999999999887654332211       123556788888887643   12789999999999


Q ss_pred             EEeCCCCce------------------eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe-----
Q 001310          469 VWDAVTGSR------------------TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY-----  525 (1103)
Q Consensus       469 iwd~~~~~~------------------~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-----  525 (1103)
                      +||+.....                  ......+...+.+++|++  ++ +|++|+.||+|++||+.+++....+     
T Consensus       150 vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~  226 (393)
T d1sq9a_         150 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS  226 (393)
T ss_dssp             EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred             EEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccc
Confidence            999753210                  111123556688888864  44 8999999999999999988766543     


Q ss_pred             -cCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecc----------cccCCceEEEEEcCCCCEEE
Q 001310          526 -DAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL----------QLQHNSVSVVHFDTAKDQIL  594 (1103)
Q Consensus       526 -~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----------~~~~~~v~~~~~~~~~~~l~  594 (1103)
                       ..|..+|.+++|+|||++|++++.++. .+.|++||+.+++.+..+...          ..|...|.+++|+|++++|+
T Consensus       227 l~~h~~~V~~l~~spdg~~l~sgs~D~t-~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~  305 (393)
T d1sq9a_         227 MINNSNSIRSVKFSPQGSLLAIAHDSNS-FGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLC  305 (393)
T ss_dssp             --CCCCCEEEEEECSSTTEEEEEEEETT-EEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEE
T ss_pred             cccccceEEEcccccccceeeeecCCCC-cceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeE
Confidence             457789999999999999999986432 457999999999988877521          12348999999999999999


Q ss_pred             EEeCCCcEEEEECCCCeeEEEEcCCCCCC--CCceEEEecCCCEEEEEE
Q 001310          595 AAGDDHVIKIWDMNKVQLLTTIDAGGGLP--ENPRICFNKNGTLLAVIA  641 (1103)
Q Consensus       595 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~--~v~~v~~s~~g~~l~~~~  641 (1103)
                      +++.|++|++||+.+++++.++..|....  ....++|+|++..+++++
T Consensus       306 S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~~~~~~~~~~~~  354 (393)
T d1sq9a_         306 SAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG  354 (393)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCC
T ss_pred             EECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEECCCCCEEEEcc
Confidence            99999999999999999999998774321  123588999998876443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.95  E-value=9.8e-26  Score=253.58  Aligned_cols=270  Identities=11%  Similarity=0.115  Sum_probs=200.3

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccc---cceEeccccccEEEEEE---ec-CC-CceEEEEEcC
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDAR---QQLEIDAHVGNVNDLAF---SA-PC-KQISVITCGD  463 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~---~~~~l~~h~~~v~~~~~---s~-d~-~~~~l~s~~~  463 (1103)
                      .++|.+.|.++++++  ++|++++.|++|+|||..+.+...   .......|...+..+..   .+ ++ ...++++++.
T Consensus        10 ~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~   87 (393)
T d1sq9a_          10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSF   87 (393)
T ss_dssp             SSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEET
T ss_pred             CCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeC
Confidence            678999999999874  799999999999999987654321   11122334443332222   11 11 1126789999


Q ss_pred             CCceEEEeCCCCceeEEe----------ecCCCceEEEEeeecCC---ccEEEEEECCCeEEEEEcCCCCe---------
Q 001310          464 DKTIKVWDAVTGSRTYSF----------EGHGAPVYSLCPHAKEN---IHFIFSISVDGKIKAWLYDSLGA---------  521 (1103)
Q Consensus       464 d~~i~iwd~~~~~~~~~~----------~~~~~~v~~~~~~~~~~---~~~l~s~~~dg~i~iwd~~~~~~---------  521 (1103)
                      ||.|++|++........+          ..+...+..+++.+..+   +.++++++.||.+++|++.....         
T Consensus        88 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~  167 (393)
T d1sq9a_          88 SGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNW  167 (393)
T ss_dssp             TSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCC
T ss_pred             CCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeee
Confidence            999999997654332111          12345566777665432   57899999999999999853211         


Q ss_pred             ---------eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc---ccCCceEEEEEcCC
Q 001310          522 ---------RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTA  589 (1103)
Q Consensus       522 ---------~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~  589 (1103)
                               ......+...+.+++|+|++ +|++++.    ++.|++||+.+++.+..+....   .|...|.+++|+|+
T Consensus       168 ~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spd  242 (393)
T d1sq9a_         168 SPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQ  242 (393)
T ss_dssp             CCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSS
T ss_pred             ccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccceEEEcccccc
Confidence                     00112334458899999998 7788765    6779999999999887665422   24489999999999


Q ss_pred             CCEEEEEeCCCc---EEEEECCCCeeEEEEcCC-----------CCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCC
Q 001310          590 KDQILAAGDDHV---IKIWDMNKVQLLTTIDAG-----------GGLPENPRICFNKNGTLLAVIANENRIKILETPESN  655 (1103)
Q Consensus       590 ~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~~-----------~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~  655 (1103)
                      +++|++|+.|++   |++||+.+++.+..+...           +|...|.+++|+|++++|++++.|++|++||+.+++
T Consensus       243 g~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~  322 (393)
T d1sq9a_         243 GSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKE  322 (393)
T ss_dssp             TTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTE
T ss_pred             cceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCC
Confidence            999999998875   899999999988877532           345679999999999999999999999999999999


Q ss_pred             eeEecccccccee
Q 001310          656 SVDAAGVLSDNLR  668 (1103)
Q Consensus       656 ~~~~~~~~~~~i~  668 (1103)
                      ++..+++|...|.
T Consensus       323 ~~~~l~gH~~~v~  335 (393)
T d1sq9a_         323 RITTLNMHCDDIE  335 (393)
T ss_dssp             EEEEEECCGGGCS
T ss_pred             EEEEECCcCCccc
Confidence            9999999998875

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3e-25  Score=238.14  Aligned_cols=271  Identities=16%  Similarity=0.253  Sum_probs=220.4

Q ss_pred             ccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEe
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWD  471 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd  471 (1103)
                      ..+|...|+|++|  ||++||+|+.||+|+|||+.+++.+.   .+.+|...|.+++|  +++  +|++|+.|+.|++|+
T Consensus        11 ~~~~~~~V~c~~~--d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~   81 (293)
T d1p22a2          11 RSETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD   81 (293)
T ss_dssp             CCSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred             cCCCCCCEEEEEE--cCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence            5578899998765  79999999999999999999987665   78899999999987  566  899999999999999


Q ss_pred             CCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE---EecCCCccEEEEEEccCCCEEEEEe
Q 001310          472 AVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV---DYDAPGLGCTRMAYSANGRRLFSCG  548 (1103)
Q Consensus       472 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~~~~~~i~~~~~s~dg~~l~~~~  548 (1103)
                      +..+........+.........    ....++++..++.+.+|+........   ....+...+..+.+.+  ..+++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s  155 (293)
T d1p22a2          82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS  155 (293)
T ss_dssp             SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred             cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence            9999988877766655544432    34589999999999999998766433   4455666776666554  5666666


Q ss_pred             cCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceE
Q 001310          549 TSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRI  628 (1103)
Q Consensus       549 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v  628 (1103)
                      .    ++.+++||..+++.+..+.++.   ..+..+.++  +..+++++.||.|++||+.+...+.....+..    ...
T Consensus       156 ~----d~~i~~~d~~~~~~~~~~~~~~---~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~v~  222 (293)
T d1p22a2         156 G----DRTIKVWNTSTCEFVRTLNGHK---RGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE----LVR  222 (293)
T ss_dssp             T----TSEEEEEETTTCCEEEEEECCS---SCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS----CEE
T ss_pred             C----CCceeeecCCCCcEEEEEcccc---cccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce----eee
Confidence            4    6679999999999999998877   778777765  56899999999999999999999988876533    234


Q ss_pred             EEecCCCEEEEEECCCeEEEEEcCC---------CCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCc
Q 001310          629 CFNKNGTLLAVIANENRIKILETPE---------SNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVK  699 (1103)
Q Consensus       629 ~~s~~g~~l~~~~~dg~i~iw~~~~---------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~  699 (1103)
                      .+++++.+|++++.||.|++||+..         ...+..+.+|...|.+++++                        +.
T Consensus       223 ~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~d------------------------~~  278 (293)
T d1p22a2         223 CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFD------------------------EF  278 (293)
T ss_dssp             EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEEC------------------------SS
T ss_pred             eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEEc------------------------CC
Confidence            5778899999999999999999753         24567778888888877664                        56


Q ss_pred             cceeecccccccccc
Q 001310          700 PEISVEAENKSEVEK  714 (1103)
Q Consensus       700 ~l~s~~~d~~i~~w~  714 (1103)
                      ++++++.|++|++||
T Consensus       279 ~l~s~s~Dg~i~iWD  293 (293)
T d1p22a2         279 QIVSSSHDDTILIWD  293 (293)
T ss_dssp             CEEECCSSSEEEEEC
T ss_pred             EEEEEecCCEEEEeC
Confidence            799999999999997

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=4e-26  Score=251.10  Aligned_cols=297  Identities=9%  Similarity=-0.014  Sum_probs=220.8

Q ss_pred             eccCCCccEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          391 LVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       391 ~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      +..+|++.|++|+||||+++||+|+.||+|+|||+.++..........+|..+|.+++|+|++.. +|++|+.|+.|++|
T Consensus         6 ~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~-~l~sg~~d~~v~~w   84 (342)
T d1yfqa_           6 IEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKV   84 (342)
T ss_dssp             CSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEE
T ss_pred             cCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCC-EEEEcccccceeee
Confidence            37789999999999999999999999999999999887654444445579999999999998654 79999999999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE----ecC--CCccEEEEEEccCCCEE
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD----YDA--PGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~----~~~--~~~~i~~~~~s~dg~~l  544 (1103)
                      ++..+........+........+.. .+...+++++.++.+++||++.......    ...  .......+.+.+++..+
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (342)
T d1yfqa_          85 DLIGSPSFQALTNNEANLGICRICK-YGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRL  163 (342)
T ss_dssp             CSSSSSSEEECBSCCCCSCEEEEEE-ETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECSSEE
T ss_pred             ecccccccccccccccccccccccc-cccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccCCce
Confidence            9999888877766665554444332 3556899999999999999865443221    111  12244567788899999


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEeCCCcEEEEECCCCeeE------EEE-
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAGDDHVIKIWDMNKVQLL------TTI-  616 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~dg~i~iwd~~~~~~~------~~~-  616 (1103)
                      ++++.    ++.|++||+...+..............+.+..+. .++..+++++.||.+.+|+.......      ..+ 
T Consensus       164 ~~~~~----d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~  239 (342)
T d1yfqa_         164 IVGMN----NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR  239 (342)
T ss_dssp             EEEES----TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE
T ss_pred             eeecC----CCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee
Confidence            99876    5679999998776544333322223455555554 45678899999999999998653221      111 


Q ss_pred             ------cCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEe
Q 001310          617 ------DAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSV  690 (1103)
Q Consensus       617 ------~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~  690 (1103)
                            ....+...+.+++|+|++++|++|+.||.|++||+.+++.+..+..+ .....++++                 
T Consensus       240 ~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s-----------------  301 (342)
T d1yfqa_         240 CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIA-----------------  301 (342)
T ss_dssp             CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEE-----------------
T ss_pred             eeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEE-----------------
Confidence                  11123345789999999999999999999999999999888776533 233344554                 


Q ss_pred             cCCCCCCCccceeecccccccccccc
Q 001310          691 NEDPKEDVKPEISVEAENKSEVEKPL  716 (1103)
Q Consensus       691 ~~~~s~d~~~l~s~~~d~~i~~w~~~  716 (1103)
                           |+++.+++++.|+.+++|...
T Consensus       302 -----~~~~~l~~a~sdd~~~~~~~~  322 (342)
T d1yfqa_         302 -----CSDNILCLATSDDTFKTNAAI  322 (342)
T ss_dssp             -----ECSSEEEEEEECTHHHHCSSS
T ss_pred             -----eCCCEEEEEEcCCcEEEeeee
Confidence                 567888888889999888754

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.94  E-value=7.6e-27  Score=259.68  Aligned_cols=317  Identities=15%  Similarity=0.106  Sum_probs=220.7

Q ss_pred             eEEEecC-CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC
Q 001310          338 MSMDFHP-VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS  416 (1103)
Q Consensus       338 ~~v~~sp-dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~  416 (1103)
                      ..-.||| ||+ ++|+++. |.|++||++++..+.                    + +|...|.+++|||||++|++++.
T Consensus         6 ~~~~fSP~dG~-~~a~~~~-g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~   62 (360)
T d1k32a3           6 FAEDFSPLDGD-LIAFVSR-GQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT   62 (360)
T ss_dssp             GEEEEEECGGG-CEEEEET-TEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred             hcccccCCCCC-EEEEEEC-CeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEEc
Confidence            3467999 999 4676654 899999998887653                    2 58999999999999999998776


Q ss_pred             CC--eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310          417 KH--IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1103)
Q Consensus       417 d~--~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1103)
                      +.  .|++||+.+++..    .+..|...|.+++|+|||+  +|++++.++.+++|++.+++....+..|...+.+++|+
T Consensus        63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s  136 (360)
T d1k32a3          63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS  136 (360)
T ss_dssp             TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred             CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence            53  7999999987643    4678999999999999999  89999999999999999999999999999999999995


Q ss_pred             ecCCccEEEEEE----------CCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC
Q 001310          495 AKENIHFIFSIS----------VDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE  564 (1103)
Q Consensus       495 ~~~~~~~l~s~~----------~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~  564 (1103)
                      +  +|.+|+.++          .++.+++|++.+++. .....+...+..++|+|||++|++++.    ++.+.+||...
T Consensus       137 p--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~  209 (360)
T d1k32a3         137 D--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKI-FAATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV  209 (360)
T ss_dssp             T--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEE-EECSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred             c--ceeeeeeeccccccceeeccccceeeeccccCce-eeecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence            4  677887653          345689999987654 344456677889999999999999875    44588898765


Q ss_pred             CeeE-------EEEecccccCCceEEEEEcCCCCEEEEEeCCCc-----EEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          565 GAIK-------RTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHV-----IKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       565 ~~~~-------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-----i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      ....       ..+..+.   ..+..+.|++++..+.++..+..     +..++...                       
T Consensus       210 ~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------------  263 (360)
T d1k32a3         210 LNFSFEVVSKPFVIPLIP---GSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDP-----------------------  263 (360)
T ss_dssp             SCEECCSCBEEEEEESST---TCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCC-----------------------
T ss_pred             cceeeccccceEEEeccc---CccccceECCCcCcccccceeecccccceeecccCc-----------------------
Confidence            4332       1122222   33333445555544443322211     11111111                       


Q ss_pred             CCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeecccccccc
Q 001310          633 NGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEV  712 (1103)
Q Consensus       633 ~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~  712 (1103)
                       ++.......++.+..+.....                                        ++++.++++++.++.+++
T Consensus       264 -~~~~~~~~~~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~~i~~  302 (360)
T d1k32a3         264 -GDYRMIIPLESSILIYSVPVH----------------------------------------GEFAAYYQGAPEKGVLLK  302 (360)
T ss_dssp             -BCEEEEEECSSEEEEEECCCC----------------------------------------CSHHHHHHCCCCCEEEEE
T ss_pred             -CceeEeeecCCCceEEEEEec----------------------------------------CCCeeEEEecCCCCEEEE
Confidence             111111111122211111100                                        244556667777777788


Q ss_pred             ccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCc
Q 001310          713 EKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRND  767 (1103)
Q Consensus       713 w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~  767 (1103)
                      ||+...+.          ..+.+.|.+++|+|||++|++++.||.|++|++..+.
T Consensus       303 ~d~~~~~~----------~~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~  347 (360)
T d1k32a3         303 YDVKTRKV----------TEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPE  347 (360)
T ss_dssp             EETTTCCE----------EEEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTT
T ss_pred             EECCCCeE----------EEecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCC
Confidence            87664321          1144678999999999999999999999999986643

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.94  E-value=1.4e-25  Score=253.66  Aligned_cols=352  Identities=9%  Similarity=0.037  Sum_probs=259.1

Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeE--EEEcCC-CCCCCCceEEE
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLL--TTIDAG-GGLPENPRICF  630 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~--~~~~~~-~~~~~v~~v~~  630 (1103)
                      ++.|.+||..+++.+..+..+.    .+..++|+|||+++++++.|++|++||+.+++..  ..+... .+...+.+.+|
T Consensus        41 ~g~v~v~D~~t~~v~~~~~~g~----~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (432)
T d1qksa2          41 AGQIALIDGSTYEIKTVLDTGY----AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKME  116 (432)
T ss_dssp             TTEEEEEETTTCCEEEEEECSS----CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEeccc
Confidence            6679999999999999998754    5899999999999999999999999999887643  333321 11122344567


Q ss_pred             ecCCCEE-EEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001310          631 NKNGTLL-AVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1103)
Q Consensus       631 s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1103)
                      +|||++| ++++.++.+++||..+++.+..+..+...+....+.                                    
T Consensus       117 SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~------------------------------------  160 (432)
T d1qksa2         117 GWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYH------------------------------------  160 (432)
T ss_dssp             TCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEE------------------------------------
T ss_pred             CCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceecc------------------------------------
Confidence            7899986 677889999999999998887766544433222222                                    


Q ss_pred             cccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEe-ecCceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL-ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1103)
Q Consensus       710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~-~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1103)
                                             +......+.++++|..++.. ..++.+.+|+......           .+++..   
T Consensus       161 -----------------------~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~-----------~~~~~i---  203 (432)
T d1qksa2         161 -----------------------PEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNN-----------LKTTEI---  203 (432)
T ss_dssp             -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSE-----------EEEEEE---
T ss_pred             -----------------------CCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCc-----------ceEEEE---
Confidence                                   23455678899999876554 4568888888654321           112221   


Q ss_pred             CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecC-----CCCCeeEEEEcCCCCCEEEE
Q 001310          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMP-----PSPTATSLAFNPHDNNVIAI  861 (1103)
Q Consensus       789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-----~~~~i~~l~~s~~d~~~las  861 (1103)
                                 .+...+..++|+|||+++++++  ++.+.++|..+++....+..     +........+.. .+...++
T Consensus       204 -----------~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~g~~~~~  271 (432)
T d1qksa2         204 -----------SAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPT-FGPVWAT  271 (432)
T ss_dssp             -----------ECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETT-TEEEEEE
T ss_pred             -----------cccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCC-CCceecc
Confidence                       1445678999999999988886  47899999999888776643     333444555554 5555555


Q ss_pred             Ee-CCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCce
Q 001310          862 GM-DDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSET  940 (1103)
Q Consensus       862 g~-~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~  940 (1103)
                      .. .++.|.+|+.....    ...|...|....++|++..+++++.+.+.++|+.....           .+..   ...
T Consensus       272 ~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~-----------~~~~---~~~  333 (432)
T d1qksa2         272 SHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLN-----------PEAE---ISG  333 (432)
T ss_dssp             EBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTC-----------SSHH---HHT
T ss_pred             cccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCC-----------CCCC---eee
Confidence            43 47899999876543    35577889999999999999999999999999876532           1111   133


Q ss_pred             EEEEcCCCCEEEEE-eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe-----cCCcEEEEeCCCceeEE
Q 001310          941 HIQFHKDQTRFLLV-HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF-----VDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus       941 ~l~fs~dg~~l~~~-~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~-----~dg~v~vWd~~~~~~~~ 1014 (1103)
                      ++++ ||++.++++ .|+.+++|++.++..+    ..|...|.+++|||||++++.+.     .+|.|.|||..|+++..
T Consensus       334 sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l----~~~~~~v~~~~fS~DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~  408 (432)
T d1qksa2         334 SVAV-FDIKAMTGDGSDPEFKTLPIAEWAGI----TEGQPRVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKH  408 (432)
T ss_dssp             CEEE-EEGGGCCCSSSCCCEEEECHHHHHTC----CSSCCEEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEE
T ss_pred             EEEE-EechhhcccccCCceEeccccccccc----CCCCCcEEEeEECCCCCEEEEEEecCCCCCCcEEEEECCCceEEe
Confidence            4555 999999995 7899999998766432    35667899999999999886654     46889999999999988


Q ss_pred             eec
Q 001310         1015 RIL 1017 (1103)
Q Consensus      1015 ~~~ 1017 (1103)
                      .+.
T Consensus       409 ~i~  411 (432)
T d1qksa2         409 VIK  411 (432)
T ss_dssp             EEC
T ss_pred             Eec
Confidence            776

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.94  E-value=7.2e-25  Score=249.02  Aligned_cols=346  Identities=8%  Similarity=0.055  Sum_probs=239.7

Q ss_pred             ceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEE--cCC-CCCCCCceEEE
Q 001310          554 ESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTI--DAG-GGLPENPRICF  630 (1103)
Q Consensus       554 ~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~--~~~-~~~~~v~~v~~  630 (1103)
                      ++.|.+||+.+++.+..+..+.    .+..++|+|||+++++++.|++|++||+.+++.....  ... ++...+.+++|
T Consensus        41 dg~v~vwD~~t~~~~~~l~~g~----~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~  116 (426)
T d1hzua2          41 AGQIALVDGDSKKIVKVIDTGY----AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFK  116 (426)
T ss_dssp             TTEEEEEETTTCSEEEEEECCS----SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCST
T ss_pred             CCEEEEEECCCCcEEEEEeCCC----CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeee
Confidence            7789999999999999998765    5899999999999999999999999999988755433  221 11222445677


Q ss_pred             ecCCCEEEEE-ECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccc
Q 001310          631 NKNGTLLAVI-ANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENK  709 (1103)
Q Consensus       631 s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~  709 (1103)
                      +|||++++++ ..++.+++||..++........+...+....+.                                    
T Consensus       117 spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~------------------------------------  160 (426)
T d1hzua2         117 GYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYH------------------------------------  160 (426)
T ss_dssp             TCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEE------------------------------------
T ss_pred             cCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeec------------------------------------
Confidence            8899987555 578999999999998887776655544333333                                    


Q ss_pred             cccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ceEEEeecCCCccccccccccccCCeeecCCCC
Q 001310          710 SEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHG  788 (1103)
Q Consensus       710 i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~  788 (1103)
                                             +......+.+++++..++....+ +.+.+++.....                     
T Consensus       161 -----------------------~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~---------------------  196 (426)
T d1hzua2         161 -----------------------PEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDID---------------------  196 (426)
T ss_dssp             -----------------------SCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSS---------------------
T ss_pred             -----------------------CCCceeEEEECCCCCEEEEecCCCCeEEEEEecccc---------------------
Confidence                                   22334456667777766655544 445444432211                     


Q ss_pred             CceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCC--CCCeeEEEEcCCCCCEE--EEE
Q 001310          789 PQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPP--SPTATSLAFNPHDNNVI--AIG  862 (1103)
Q Consensus       789 ~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~--~~~i~~l~~s~~d~~~l--asg  862 (1103)
                       .+.....   ++...+..++++|++++++++.  +..+.+++..+++........  ........+.......+  +..
T Consensus       197 -~~~~~~~---~~~~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (426)
T d1hzua2         197 -NLTVTSI---GAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSH  272 (426)
T ss_dssp             -SCEEEEE---ECCSSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEEC
T ss_pred             -ceeeEEe---ccCCccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEecc
Confidence             0111001   2667788999999999998886  477999999999988776532  22233333333122222  234


Q ss_pred             eCCCeEEEEEcCC-------ceeEEEeccCCCCEEEEEEccCCCEEEE-------EeCCCeEEEEEcCCCceeeee-eee
Q 001310          863 MDDSTILIYNARS-------SEVISKLEGHSKRVTGLVFSDALNILVS-------SGGDAQIFVWDVDGWGIQTCR-SLQ  927 (1103)
Q Consensus       863 ~~dg~v~iwd~~~-------~~~~~~l~~h~~~V~~l~~s~dg~~l~s-------~s~dg~I~iwd~~~~~~~~~~-~~~  927 (1103)
                      +.|+.+.+|+...       ++....+.+|...+..++|+||+++|++       ++.|++|+|||+.+++..... .+.
T Consensus       273 ~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~  352 (426)
T d1hzua2         273 LGDGSISLIGTDPKNHPQYAWKKVAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIA  352 (426)
T ss_dssp             TTTCEEEEEECCTTTCTTTBTSEEEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHH
T ss_pred             CCCceEEEeeccccccccccceEeEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccc
Confidence            4678888887654       4678899999999999999999999994       556889999999998754321 111


Q ss_pred             cCCCcccCCCCceEEEEcCCCCEEEEE------eCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEE
Q 001310          928 TPDGVMTLAPSETHIQFHKDQTRFLLV------HETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVF  994 (1103)
Q Consensus       928 ~~~~~~~~~~~v~~l~fs~dg~~l~~~------~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~  994 (1103)
                      ...++......+.+++|||||++++++      .++.|.|||.++++.... ..++.      .++|+|+|-+
T Consensus       353 ~~~~~~~~~~rv~~~~fSpDGk~i~vs~~~~~~~~~~i~v~D~~T~k~~~~-i~~~~------~~tp~Gk~~~  418 (426)
T d1hzua2         353 EWADLGEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV-VKDPR------LITPTGKFNV  418 (426)
T ss_dssp             HHHCCCSSCCCEEEEEECSSSSEEEEEECCCTTSCCEEEEEETTTTEEEEE-ECCTT------CCSEEEEEEH
T ss_pred             hhcccCCCCccEEEEEECCCCCEEEEEEecCCCCCCeEEEEECCCCeEEEE-ECCCC------ccCCCceEeE
Confidence            111222223468999999999987552      367899999999998876 44432      3468887744

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.93  E-value=1.8e-25  Score=248.36  Aligned_cols=332  Identities=10%  Similarity=0.020  Sum_probs=238.9

Q ss_pred             EEEcc-CCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCC--cEEEEECCCCe
Q 001310          535 MAYSA-NGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDH--VIKIWDMNKVQ  611 (1103)
Q Consensus       535 ~~~s~-dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~  611 (1103)
                      ..||| ||+++++++     .+.|++||..++..++.  +|.   ..|.+++|+|||++|++++.+.  .|++||..+++
T Consensus         8 ~~fSP~dG~~~a~~~-----~g~v~v~d~~~~~~~~~--~~~---~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~   77 (360)
T d1k32a3           8 EDFSPLDGDLIAFVS-----RGQAFIQDVSGTYVLKV--PEP---LRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGK   77 (360)
T ss_dssp             EEEEECGGGCEEEEE-----TTEEEEECTTSSBEEEC--SCC---SCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCC
T ss_pred             ccccCCCCCEEEEEE-----CCeEEEEECCCCcEEEc--cCC---CCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCc
Confidence            56999 999999986     34699999998877653  444   7899999999999998876553  79999999887


Q ss_pred             eEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEec
Q 001310          612 LLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1103)
Q Consensus       612 ~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  691 (1103)
                      ..... .+  ...+.+++|+|+|++|++++.++.+++|+..+++....+..+...+.+++++|++..++...        
T Consensus        78 ~~~~~-~~--~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~--------  146 (360)
T d1k32a3          78 AEKFE-EN--LGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGF--------  146 (360)
T ss_dssp             EEECC-CC--CCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEE--------
T ss_pred             EEEee-CC--CceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeec--------
Confidence            66443 33  34589999999999999999999999999999999999999999999999987766654321        


Q ss_pred             CCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccc
Q 001310          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  771 (1103)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~  771 (1103)
                          ++......+..++.+++|+........     .  ..+...+..++|+|+|+.|++++.++.+.+|+.......  
T Consensus       147 ----~~~~~~~~~~~~~~~~v~d~~~~~~~~-----~--~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~~~--  213 (360)
T d1k32a3         147 ----PLKHGETDGYVMQAIHVYDMEGRKIFA-----A--TTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS--  213 (360)
T ss_dssp             ----EECSSTTCSCCEEEEEEEETTTTEEEE-----C--SCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE--
T ss_pred             ----cccccceeeccccceeeeccccCceee-----e--cccccccccccccCCCCEEEEEeCCCceEccccccccee--
Confidence                223334456667788899987432211     1  125567888999999999999999999999986543211  


Q ss_pred             cccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-C-----CeEEEEEcCCceeeEEecCCCCC
Q 001310          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G-----GVISLYIVMTFKTILTIMPPSPT  845 (1103)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d-----g~i~iwd~~~~~~~~~~~~~~~~  845 (1103)
                                   .....+.....+    +...+..+.++++++.++++. +     ..+..++...+.. ..+..+...
T Consensus       214 -------------~~~~~~~~~~~~----~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  275 (360)
T d1k32a3         214 -------------FEVVSKPFVIPL----IPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDY-RMIIPLESS  275 (360)
T ss_dssp             -------------CCSCBEEEEEES----STTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCCCBCE-EEEEECSSE
T ss_pred             -------------eccccceEEEec----ccCccccceECCCcCcccccceeecccccceeecccCcCce-eEeeecCCC
Confidence                         111111111111    344455566778777766553 1     1233334444332 333344555


Q ss_pred             eeEEEEcCC--CCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceee
Q 001310          846 ATSLAFNPH--DNNVIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQT  922 (1103)
Q Consensus       846 i~~l~~s~~--d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~  922 (1103)
                      +..+.+.+.  +..++++++.++.|++||+.+++..    .|.+.|.+++|||||++|++++.||.|++||++.++...
T Consensus       276 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~----~~~~~v~~~~~SpDG~~l~~~~~Dg~i~v~d~~~~~~~~  350 (360)
T d1k32a3         276 ILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVT----EVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDER  350 (360)
T ss_dssp             EEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEE----EEEEEEEEEEECTTSCEEEEEETTSCEEEEESSCTTSCE
T ss_pred             ceEEEEEecCCCeeEEEecCCCCEEEEEECCCCeEE----EecCCcCEEEECCCCCEEEEEECCCeEEEEECCCCCcce
Confidence            555555441  3346788899999999999987642    345669999999999999999999999999999877433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.90  E-value=9.2e-21  Score=203.89  Aligned_cols=275  Identities=12%  Similarity=0.102  Sum_probs=217.5

Q ss_pred             eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEE-EEeCCCeEEEEEec
Q 001310          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLG-VAYSKHIVQLYAYH  426 (1103)
Q Consensus       348 ~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~la-s~~~d~~i~iwd~~  426 (1103)
                      ++.++++.|++|.|||+++++.+.+..                    ....+..++|||||++|+ +++.++.|++||+.
T Consensus         3 ~~yV~~~~~~~v~v~D~~t~~~~~~i~--------------------~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~   62 (301)
T d1l0qa2           3 FAYIANSESDNISVIDVTSNKVTATIP--------------------VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA   62 (301)
T ss_dssp             EEEEEETTTTEEEEEETTTTEEEEEEE--------------------CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred             EEEEEECCCCEEEEEECCCCeEEEEEE--------------------CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence            456778889999999999998876522                    234678999999999885 56678999999999


Q ss_pred             CCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEE-EEE
Q 001310          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFI-FSI  505 (1103)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l-~s~  505 (1103)
                      +++.+.   .+..|. .+..++|++++.. +++++..++.+.+|+..+++....+..+. .+..+++++  ++..+ +++
T Consensus        63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~--dg~~~~~~~  134 (301)
T d1l0qa2          63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTGK-SPLGLALSP--DGKKLYVTN  134 (301)
T ss_dssp             TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEE
T ss_pred             CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeeccccc-cceEEEeec--CCCeeeeee
Confidence            987655   455554 4688999999986 56777888999999999999988887554 556677754  55554 566


Q ss_pred             ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEE
Q 001310          506 SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVH  585 (1103)
Q Consensus       506 ~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~  585 (1103)
                      ..++.+.+|+..+......+... .....++++|+++.++++..+   ...+.+|+....+.........    .+..++
T Consensus       135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~----~~~~~~  206 (301)
T d1l0qa2         135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFD---SMSISVIDTVTNSVIDTVKVEA----APSGIA  206 (301)
T ss_dssp             TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETT---TTEEEEEETTTTEEEEEEECSS----EEEEEE
T ss_pred             ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccc---ccccccccccceeeeecccccC----Ccceee
Confidence            67889999999988777766654 356789999999999888653   4568888888887777666543    577899


Q ss_pred             EcCCCCEEEEEe---CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEE-EEEECCCeEEEEEcCCCCeeEecc
Q 001310          586 FDTAKDQILAAG---DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLL-AVIANENRIKILETPESNSVDAAG  661 (1103)
Q Consensus       586 ~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~dg~i~iw~~~~~~~~~~~~  661 (1103)
                      ++++++.++.++   .++.|++||..+++.+..+..+.   .+..++|+|||++| ++++.++.|.+||+.+++.+..+.
T Consensus       207 ~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         207 VNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             ECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             ccccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999999887754   34689999999999998887643   36899999999987 566678999999999998777664

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.89  E-value=4.8e-20  Score=198.16  Aligned_cols=268  Identities=14%  Similarity=0.174  Sum_probs=203.9

Q ss_pred             EEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE-EEECCCeEEEEEcCCCCeeEeccccccceeeeEE
Q 001310          594 LAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRKLSV  672 (1103)
Q Consensus       594 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~  672 (1103)
                      ++++.|++|.+||+.+++.+.++....   .+..++|+|||++|+ +++.++.|++||+.+++.+..+.           
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~---~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~-----------   71 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGS---NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVP-----------   71 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSS---SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-----------
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCC---CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeee-----------
Confidence            456789999999999999999987653   357899999999875 55678899999988764433221           


Q ss_pred             ecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEe
Q 001310          673 NPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFAL  752 (1103)
Q Consensus       673 ~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~  752 (1103)
                                                                                                      
T Consensus        72 --------------------------------------------------------------------------------   71 (301)
T d1l0qa2          72 --------------------------------------------------------------------------------   71 (301)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             --------------------------------------------------------------------------------
Confidence                                                                                            


Q ss_pred             ecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--CCeEEEEEc
Q 001310          753 ASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--GGVISLYIV  830 (1103)
Q Consensus       753 ~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~  830 (1103)
                                                                      ....+..+++++++..+++..  ++.+.+|+.
T Consensus        72 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  103 (301)
T d1l0qa2          72 ------------------------------------------------AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDT  103 (301)
T ss_dssp             ------------------------------------------------CSSSEEEEEECTTSSEEEEEETTTTEEEEEET
T ss_pred             ------------------------------------------------ccccccccccccccccccccccccceeeeccc
Confidence                                                            011234556666766555543  467889999


Q ss_pred             CCceeeEEecCCCCCeeEEEEcCCCCCEE-EEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCC-C
Q 001310          831 MTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGD-A  908 (1103)
Q Consensus       831 ~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~d-g  908 (1103)
                      .+++....+.. .....+++|+| +++.+ +++..++.+.+|+..+++.+..+..+ ..+..++++|+++.+++++.+ +
T Consensus       104 ~~~~~~~~~~~-~~~~~~~~~~~-dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~  180 (301)
T d1l0qa2         104 TSNTVAGTVKT-GKSPLGLALSP-DGKKLYVTNNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANFDSM  180 (301)
T ss_dssp             TTTEEEEEEEC-SSSEEEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEETTTT
T ss_pred             ccceeeeeccc-cccceEEEeec-CCCeeeeeeccccceeeeeccccceeeecccC-CCceEEEeeccccceeeeccccc
Confidence            88888887764 45678899999 66555 56667889999999999988888755 458899999999988887765 6


Q ss_pred             eEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-e---CCeEEEEECCCceEEEEeeCCCCcCeEEE
Q 001310          909 QIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-H---ETHLAIYEAEELTCLKQWFPISSVPISQA  984 (1103)
Q Consensus       909 ~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~---d~~v~iwd~~~~~~~~~~~~~h~~~v~~l  984 (1103)
                      .+.+|+....+...  .....       ..+..++|+++++.++++ .   ++.|++||+.+++.+..+..  ...+.++
T Consensus       181 ~~~~~~~~~~~~~~--~~~~~-------~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~--~~~~~~v  249 (301)
T d1l0qa2         181 SISVIDTVTNSVID--TVKVE-------AAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPV--GPDPAGI  249 (301)
T ss_dssp             EEEEEETTTTEEEE--EEECS-------SEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEEC--CSSEEEE
T ss_pred             ccccccccceeeee--ccccc-------CCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcC--CCCEEEE
Confidence            67788877755333  12221       146789999999998763 2   36799999999999877443  4568999


Q ss_pred             EEccCCCEE-EEEecCCcEEEEeCCCceeEEeec
Q 001310          985 TFSCDCRMV-FTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       985 ~fs~dg~~l-~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      +|||||++| ++++.|++|++||+++++++.++.
T Consensus       250 a~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~  283 (301)
T d1l0qa2         250 AVTPDGKKVYVALSFCNTVSVIDTATNTITATMA  283 (301)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred             EEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence            999999987 566789999999999999998876

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.88  E-value=6.6e-22  Score=217.79  Aligned_cols=327  Identities=9%  Similarity=-0.024  Sum_probs=219.7

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECCCeEEEEEcCCCCeeEeccc
Q 001310          584 VHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANENRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       584 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~dg~i~iw~~~~~~~~~~~~~  662 (1103)
                      ++|+++++++++++.+++|.+||+.+++.+.++..+.. ..+.+++|+|||++++++ ..++.|.+||+.+++.+..+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~-~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~   80 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK-FGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   80 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSC-CSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCC-CCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeecc
Confidence            46889999999999999999999999999998875433 246799999999987554 5789999999998877654432


Q ss_pred             cccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEE
Q 001310          663 LSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTY  742 (1103)
Q Consensus       663 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  742 (1103)
                      .....                                                                .+...+..++|
T Consensus        81 ~~~~~----------------------------------------------------------------~~~~~~~~v~~   96 (346)
T d1jmxb_          81 SSVPG----------------------------------------------------------------EVGRSMYSFAI   96 (346)
T ss_dssp             CCSTT----------------------------------------------------------------EEEECSSCEEE
T ss_pred             ccccc----------------------------------------------------------------ccCCceEEEEE
Confidence            11100                                                                01122334667


Q ss_pred             ecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcC
Q 001310          743 NNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASG  822 (1103)
Q Consensus       743 s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~d  822 (1103)
                      +|||+++++++.+.....|....          ....+.+|+..++.........  .....+..+.++++++.++.  +
T Consensus        97 s~DG~~l~v~~~~~~~~~~~~~~----------~~~~i~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~--~  162 (346)
T d1jmxb_          97 SPDGKEVYATVNPTQRLNDHYVV----------KPPRLEVFSTADGLEAKPVRTF--PMPRQVYLMRAADDGSLYVA--G  162 (346)
T ss_dssp             CTTSSEEEEEEEEEEECSSCEEE----------CCCEEEEEEGGGGGGBCCSEEE--ECCSSCCCEEECTTSCEEEE--S
T ss_pred             ecCCCEEEEEecCCcceeeeecc----------CcceEEEEecccceeeeEEEee--eccCceEEEEecCCCEEEEe--C
Confidence            77777776665432222111100          0011233333333222111110  12345566777888877665  3


Q ss_pred             CeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEE-EEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccCCCEE
Q 001310          823 GVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVI-AIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDALNIL  901 (1103)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~l-asg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l  901 (1103)
                      +.+.+|++.+++.+..+..+ .....++++| ++..+ +.+..++.+.+++..                 ..+.+....+
T Consensus       163 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~  223 (346)
T d1jmxb_         163 PDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DVLYFWPHQSPRHEFSMLYTI-----------------ARFKDDKQDP  223 (346)
T ss_dssp             SSEEEECTTTCCEEEEECST-TCCCTTBCCC-BCCCCCCCCCTTCEEEEEEEE-----------------EEC-------
T ss_pred             CcceEEEccCCCEEEEEecC-CCccceEEec-cccEEEEEecCCCceEeeeee-----------------eeeccCceeE
Confidence            56899999999998888644 3456677888 55444 444455555555421                 1223445556


Q ss_pred             EEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCe
Q 001310          902 VSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPI  981 (1103)
Q Consensus       902 ~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v  981 (1103)
                      +++..++.+.+||+.++...........       ..+..+.+++++.+++...++.+.+||..+++.+.....  ...+
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~--~~~~  294 (346)
T d1jmxb_         224 ATADLLYGYLSVDLKTGKTHTQEFADLT-------ELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL--DHTY  294 (346)
T ss_dssp             CCCEEEEEEEEEETTTCCEEEEEEEECS-------SCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC--SSCC
T ss_pred             eeccCCceEEEEECCCCceEEEEeeccc-------ceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC--CCCE
Confidence            6777788899999998775442222211       257889999999999988788999999999999887554  4478


Q ss_pred             EEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          982 SQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       982 ~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      .+++|||||++|++++.|+.|+|||+++++.+.++.
T Consensus       295 ~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~i~  330 (346)
T d1jmxb_         295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIK  330 (346)
T ss_dssp             CEEEECSSSSCEEEESBSSEEEEEETTTTEEEEEEE
T ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEEEE
Confidence            999999999999999999999999999999998888

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.88  E-value=1e-20  Score=207.18  Aligned_cols=295  Identities=12%  Similarity=0.073  Sum_probs=197.1

Q ss_pred             CEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEE-EEECCCeEEEEEcCCCCeeEeccccccceee
Q 001310          591 DQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLA-VIANENRIKILETPESNSVDAAGVLSDNLRK  669 (1103)
Q Consensus       591 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~  669 (1103)
                      +++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.+++.+..+..+....  
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~--   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEE--   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTE--
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcc--
Confidence            578999999999999999999999998765555678999999999875 55678999999999987776554321100  


Q ss_pred             eEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEE
Q 001310          670 LSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAI  749 (1103)
Q Consensus       670 ~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l  749 (1103)
                                                                                     +...+..++|+|+++.+
T Consensus        80 ---------------------------------------------------------------~~~~~~~v~~s~dg~~l   96 (337)
T d1pbyb_          80 ---------------------------------------------------------------RVKSLFGAALSPDGKTL   96 (337)
T ss_dssp             ---------------------------------------------------------------EEECTTCEEECTTSSEE
T ss_pred             ---------------------------------------------------------------cccceeeEEEcCCCcEE
Confidence                                                                           11223357788888888


Q ss_pred             EEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEE
Q 001310          750 FALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYI  829 (1103)
Q Consensus       750 ~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd  829 (1103)
                      +++..+.....|..                                                       ...+..+.+||
T Consensus        97 ~~~~~~~~~~~~~~-------------------------------------------------------~~~~~~~~~~d  121 (337)
T d1pbyb_          97 AIYESPVRLELTHF-------------------------------------------------------EVQPTRVALYD  121 (337)
T ss_dssp             EEEEEEEEECSSCE-------------------------------------------------------EECCCEEEEEE
T ss_pred             EEeecCCcceeeec-------------------------------------------------------cccccceeecc
Confidence            77766544433221                                                       11133455555


Q ss_pred             cCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC---------------------
Q 001310          830 VMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR---------------------  888 (1103)
Q Consensus       830 ~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~---------------------  888 (1103)
                      ..+++....+.. ...+..++|+| +++++++++.+  +.+||..+++....+..+...                     
T Consensus       122 ~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (337)
T d1pbyb_         122 AETLSRRKAFEA-PRQITMLAWAR-DGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGV  197 (337)
T ss_dssp             TTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTE
T ss_pred             ccCCeEEEeccc-cCCceEEEEcC-CCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeeccccccce
Confidence            555555555442 23345555555 55555554432  445555555554444322110                     


Q ss_pred             --EEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeCCeEEEEECCC
Q 001310          889 --VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHETHLAIYEAEE  966 (1103)
Q Consensus       889 --V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d~~v~iwd~~~  966 (1103)
                        +.......+......++.++.+.+|+..++...........       ..+..++++|++.+++++ ++.+.+||+.+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~  269 (337)
T d1pbyb_         198 MATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMD-------VFYFSTAVNPAKTRAFGA-YNVLESFDLEK  269 (337)
T ss_dssp             EEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECS-------SCEEEEEECTTSSEEEEE-ESEEEEEETTT
T ss_pred             eeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCCC-------cceEEEEecccceEEEEc-cccEEEEECCC
Confidence              00111111222222333456689999998775443222211       257789999999998765 58999999999


Q ss_pred             ceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccc
Q 001310          967 LTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILST 1019 (1103)
Q Consensus       967 ~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~ 1019 (1103)
                      ++.+..+.  +...+.+++|||||++|++++.|++|+|||+.+++.+.++...
T Consensus       270 ~~~~~~~~--~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~~  320 (337)
T d1pbyb_         270 NASIKRVP--LPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLP  320 (337)
T ss_dssp             TEEEEEEE--CSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEECG
T ss_pred             CcEEEEEc--CCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEECC
Confidence            99998754  4567899999999999999999999999999999999888743

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.87  E-value=1e-20  Score=207.20  Aligned_cols=309  Identities=9%  Similarity=0.041  Sum_probs=206.4

Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCce
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPV  488 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v  488 (1103)
                      +|+++++.|++|.|||+++++.+..+ .+..+...+.+++|+|||+. ++++++.++.|.+||+.+++.+..+..+....
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i-~~~~~~~~~~~i~~spDg~~-l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~   79 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVI-TIADAGPTPMVPMVAPGGRI-AYATVNKSESLVKIDLVTGETLGRIDLSTPEE   79 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEE-ECTTCTTCCCCEEECTTSSE-EEEEETTTTEEEEEETTTCCEEEEEECCBTTE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEE-ECCCCCCCccEEEECCCCCE-EEEEECCCCeEEEEECCCCcEEEEEecCCCcc
Confidence            58999999999999999998766532 23344556889999999994 34677889999999999999998877554322


Q ss_pred             EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC--------CCceeEEEE
Q 001310          489 YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------EGESFLVEW  560 (1103)
Q Consensus       489 ~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------~~~~~i~iw  560 (1103)
                      ...                                       .+..++|+||+++++++....        ..+..+.+|
T Consensus        80 ~~~---------------------------------------~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  120 (337)
T d1pbyb_          80 RVK---------------------------------------SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALY  120 (337)
T ss_dssp             EEE---------------------------------------CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEE
T ss_pred             ccc---------------------------------------ceeeEEEcCCCcEEEEeecCCcceeeeccccccceeec
Confidence            111                                       011245566666555543211        124568899


Q ss_pred             eCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE
Q 001310          561 NESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI  640 (1103)
Q Consensus       561 d~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~  640 (1103)
                      |..+++....+....    .+..++|+|+++++++++.  .+.+||..+++....+..+..   .....++|++..+...
T Consensus       121 d~~~~~~~~~~~~~~----~~~~~~~s~dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~  191 (337)
T d1pbyb_         121 DAETLSRRKAFEAPR----QITMLAWARDGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSW---EAETYAQPDVLAVWNQ  191 (337)
T ss_dssp             ETTTTEEEEEEECCS----SCCCEEECTTSSCEEEESS--SEEEEETTTTEEEEEECSTTT---TTTTBCCCBCCCCCCC
T ss_pred             cccCCeEEEeccccC----CceEEEEcCCCCEEEEEcC--CcceeeeecCcEEEEeecCCc---cccceecCCcceeecc
Confidence            999999988887644    5778999999999999864  478899999999888876533   2334455555333222


Q ss_pred             ECC-CeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccC
Q 001310          641 ANE-NRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFAR  719 (1103)
Q Consensus       641 ~~d-g~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~  719 (1103)
                      ... +....+....                                         ..+.........++.+         
T Consensus       192 ~~~~~~~~~~~~~~-----------------------------------------~~~~~~~~~~~~~~~~---------  221 (337)
T d1pbyb_         192 HESSGVMATPFYTA-----------------------------------------RKDIDPADPTAYRTGL---------  221 (337)
T ss_dssp             CTTTTEEEEEEEEE-----------------------------------------BTTSCTTSGGGEEEEE---------
T ss_pred             ccccceeeeeeeee-----------------------------------------eeccceeeecccCccE---------
Confidence            111 1111111000                                         0111112222222222         


Q ss_pred             CccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCC
Q 001310          720 PSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDS  799 (1103)
Q Consensus       720 ~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  799 (1103)
                                                             .+|++..                      +...... ..  
T Consensus       222 ---------------------------------------~~~~~~~----------------------~~~~~~~-~~--  237 (337)
T d1pbyb_         222 ---------------------------------------LTMDLET----------------------GEMAMRE-VR--  237 (337)
T ss_dssp             ---------------------------------------EEEETTT----------------------CCEEEEE-EE--
T ss_pred             ---------------------------------------EEEEcCC----------------------CcEEEEE-ec--
Confidence                                                   2232221                      1100000 00  


Q ss_pred             CCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE
Q 001310          800 NSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI  879 (1103)
Q Consensus       800 ~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~  879 (1103)
                      .+...+..+++++++.+++++ ++.+++||+.+++.+..+. +...+.+++|+| ||++|++++.||+|++||..+++.+
T Consensus       238 ~~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v  314 (337)
T d1pbyb_         238 IMDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKK  314 (337)
T ss_dssp             ECSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEE
T ss_pred             CCCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEE
Confidence            145567788899999988765 5889999999999998886 556789999999 8999999999999999999999998


Q ss_pred             EEecc
Q 001310          880 SKLEG  884 (1103)
Q Consensus       880 ~~l~~  884 (1103)
                      .+++-
T Consensus       315 ~~i~~  319 (337)
T d1pbyb_         315 GQVDL  319 (337)
T ss_dssp             EEEEC
T ss_pred             EEEEC
Confidence            88763

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.86  E-value=9.7e-21  Score=208.28  Aligned_cols=323  Identities=10%  Similarity=0.008  Sum_probs=215.4

Q ss_pred             EEECCCCCEEEEEeCCCeEEEEEecCCCccccceEec-cccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEE
Q 001310          402 VVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEID-AHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYS  480 (1103)
Q Consensus       402 ~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~-~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~  480 (1103)
                      ++|+++++||++++.+++|.+||+.+++.++   ++. .|...+.+++|+|||+. ++++++.++.|++||+.+++.+..
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~---t~~~~~~~~p~~l~~spDG~~-l~v~~~~~~~v~~~d~~t~~~~~~   77 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYK---SCVMPDKFGPGTAMMAPDNRT-AYVLNNHYGDIYGIDLDTCKNTFH   77 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEE---EEECSSCCSSCEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEE
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEE---EEEcCCCCCcceEEECCCCCE-EEEEECCCCcEEEEeCccCeeeee
Confidence            4789999999999999999999999987655   443 45667889999999995 457778899999999999999887


Q ss_pred             eecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC--------C
Q 001310          481 FEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK--------E  552 (1103)
Q Consensus       481 ~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~--------~  552 (1103)
                      +...........                                      .+..++|+|||++++++....        .
T Consensus        78 ~~~~~~~~~~~~--------------------------------------~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~  119 (346)
T d1jmxb_          78 ANLSSVPGEVGR--------------------------------------SMYSFAISPDGKEVYATVNPTQRLNDHYVV  119 (346)
T ss_dssp             EESCCSTTEEEE--------------------------------------CSSCEEECTTSSEEEEEEEEEEECSSCEEE
T ss_pred             ecccccccccCC--------------------------------------ceEEEEEecCCCEEEEEecCCcceeeeecc
Confidence            754322111000                                      112356666666665543211        1


Q ss_pred             CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEec
Q 001310          553 GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNK  632 (1103)
Q Consensus       553 ~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~  632 (1103)
                      .+..+.+|+..+++....+..+.. ...+..+.+++++..+++   ++.+.+|+..+++.+..+..+..   ...+.++|
T Consensus       120 ~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  192 (346)
T d1jmxb_         120 KPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSLYVA---GPDIYKMDVKTGKYTVALPLRNW---NRKGYSAP  192 (346)
T ss_dssp             CCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCEEEE---SSSEEEECTTTCCEEEEECSTTC---CCTTBCCC
T ss_pred             CcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEEEEe---CCcceEEEccCCCEEEEEecCCC---ccceEEec
Confidence            245688888888776555443321 134555667777765543   25689999999999888876533   45667778


Q ss_pred             CCCEEEEEEC-CCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccc
Q 001310          633 NGTLLAVIAN-ENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSE  711 (1103)
Q Consensus       633 ~g~~l~~~~~-dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~  711 (1103)
                      ++..+..... ++.+.+++...                                                          
T Consensus       193 ~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------------  214 (346)
T d1jmxb_         193 DVLYFWPHQSPRHEFSMLYTIA----------------------------------------------------------  214 (346)
T ss_dssp             BCCCCCCCCCTTCEEEEEEEEE----------------------------------------------------------
T ss_pred             cccEEEEEecCCCceEeeeeee----------------------------------------------------------
Confidence            7765543332 33333332110                                                          


Q ss_pred             cccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCce
Q 001310          712 VEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQF  791 (1103)
Q Consensus       712 ~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  791 (1103)
                                                   .+.+....+.+...++.+.+|++....                      ..
T Consensus       215 -----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~  243 (346)
T d1jmxb_         215 -----------------------------RFKDDKQDPATADLLYGYLSVDLKTGK----------------------TH  243 (346)
T ss_dssp             -----------------------------EC-------CCCEEEEEEEEEETTTCC----------------------EE
T ss_pred             -----------------------------eeccCceeEeeccCCceEEEEECCCCc----------------------eE
Confidence                                         001111112222223334444433221                      11


Q ss_pred             eeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310          792 MVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1103)
Q Consensus       792 ~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1103)
                      .....   .+...+..+.+++++.+++...++.|.+||..+++.+..+. +...+.+++|+| ||++|++++.||.|++|
T Consensus       244 ~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~va~s~-DG~~l~v~~~d~~v~v~  318 (346)
T d1jmxb_         244 TQEFA---DLTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAAN-LDHTYYCVAFDK-KGDKLYLGGTFNDLAVF  318 (346)
T ss_dssp             EEEEE---ECSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEE-CSSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred             EEEee---cccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEc-CCCCEEEEEEcC-CCCEEEEEeCCCcEEEE
Confidence            11000   25667788899999999998888899999999999988876 445799999999 89999999999999999


Q ss_pred             EcCCceeEEEeccCCC
Q 001310          872 NARSSEVISKLEGHSK  887 (1103)
Q Consensus       872 d~~~~~~~~~l~~h~~  887 (1103)
                      |..+++.+.+++.+.+
T Consensus       319 D~~t~~~i~~i~~p~g  334 (346)
T d1jmxb_         319 NPDTLEKVKNIKLPGG  334 (346)
T ss_dssp             ETTTTEEEEEEECSSS
T ss_pred             ECccCCEEEEEECCCC
Confidence            9999999988875443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.84  E-value=9.8e-18  Score=186.20  Aligned_cols=334  Identities=11%  Similarity=0.026  Sum_probs=222.4

Q ss_pred             ccCCCccEEEEEECCCCCEEEEE-----eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEE-----
Q 001310          392 VRDPGVSVNRVVWSPDGSLLGVA-----YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITC-----  461 (1103)
Q Consensus       392 ~~~h~~~V~~~~~spdg~~las~-----~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~-----  461 (1103)
                      ...+.+++..++++|||+.+++.     +..+.|.+||..+++.+.   .+..+..+  .++|+|||+.  ++++     
T Consensus        16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~~--l~va~~~~~   88 (373)
T d2madh_          16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGSE--FALASTSFS   88 (373)
T ss_pred             cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCCE--EEEEeecCC
Confidence            34578899999999999999775     234579999999997665   45555443  7999999994  5544     


Q ss_pred             -----cCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEE
Q 001310          462 -----GDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMA  536 (1103)
Q Consensus       462 -----~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~  536 (1103)
                           ..++.|.+||..+++.+..+..+......+...+                                     ..+.
T Consensus        89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~-------------------------------------~~~~  131 (373)
T d2madh_          89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYS-------------------------------------WMNA  131 (373)
T ss_pred             cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCC-------------------------------------CcEE
Confidence                 3467899999999999888776655444332211                                     1357


Q ss_pred             EccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECCCCeeEEE
Q 001310          537 YSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       537 ~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~  615 (1103)
                      |+++++.++....+  .+..+.+|+..+.+......       ...++.++|+++.+ ++.+.|+.+.+|+...+.....
T Consensus       132 ~s~dg~~~~v~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~  202 (373)
T d2madh_         132 NTPNNADLLFFQFA--AGPAVGLVVQGGSSDDQLLS-------SPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAG  202 (373)
T ss_pred             EEeCCCcEEEEEEc--CCCceEEeeccCCeEEEEec-------cceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEE
Confidence            88888887766543  24568889988776554433       35577899998766 5688999999999998887766


Q ss_pred             EcCCC----CCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEec
Q 001310          616 IDAGG----GLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1103)
Q Consensus       616 ~~~~~----~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  691 (1103)
                      .....    .........+++++. ++..+.++.+.+|+............                             
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~~~-----------------------------  252 (373)
T d2madh_         203 LVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAGATNKAPI-----------------------------  252 (373)
T ss_pred             EeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCeEEEEEee-----------------------------
Confidence            54321    111223455566554 44556778899998876533211100                             


Q ss_pred             CCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccc
Q 001310          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  771 (1103)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~  771 (1103)
                                            +.                 +........+.|.+...++.+.++...            
T Consensus       253 ----------------------~~-----------------~~~~~~~~~~~~~~~~~~~~~~d~~~~------------  281 (373)
T d2madh_         253 ----------------------DA-----------------LSGGRKADTWRPGGWQQVAYLKSSDGI------------  281 (373)
T ss_pred             ----------------------cc-----------------ccCcEEeeeeccCcceeeEEecCCCeE------------
Confidence                                  00                 011112222233322222222222111            


Q ss_pred             cccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEE
Q 001310          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLA  850 (1103)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~  850 (1103)
                                                          ..+..++..++... ++.+.+||..+++.+..+. +...+.+++
T Consensus       282 ------------------------------------~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a  324 (373)
T d2madh_         282 ------------------------------------YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS  324 (373)
T ss_pred             ------------------------------------EEecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence                                                11222333444443 6889999999999988876 566789999


Q ss_pred             EcCCCCC--EEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccC
Q 001310          851 FNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  897 (1103)
Q Consensus       851 ~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d  897 (1103)
                      |+| ||+  ++++++.|++|++||+.+++.+..+.++....+.|++.++
T Consensus       325 ~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~  372 (373)
T d2madh_         325 VAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE  372 (373)
T ss_pred             ECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence            999 776  4578899999999999999999999988887888887654

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.82  E-value=1.1e-17  Score=185.65  Aligned_cols=306  Identities=12%  Similarity=0.017  Sum_probs=213.7

Q ss_pred             ccCCcCceEEEecCCCceEEEEE----cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECC
Q 001310          331 IEGSSSPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSP  406 (1103)
Q Consensus       331 ~~h~~~V~~v~~spdg~~llasg----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~sp  406 (1103)
                      ..+..++..+++||||++++++.    +.++.|.+||..+++.+.+                   +..+..  ..++|||
T Consensus        17 ~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~~--~~~a~Sp   75 (373)
T d2madh_          17 GAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGFL--PNPVAAH   75 (373)
T ss_pred             ccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCCC--ccEEEcC
Confidence            46778999999999999765542    2346799999999998865                   223333  3699999


Q ss_pred             CCCEEEEEe----------CCCeEEEEEecCCCccccceEeccccccE-------EEEEEecCCCceEEEEEcCCCceEE
Q 001310          407 DGSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHVGNV-------NDLAFSAPCKQISVITCGDDKTIKV  469 (1103)
Q Consensus       407 dg~~las~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~~~v-------~~~~~s~d~~~~~l~s~~~d~~i~i  469 (1103)
                      ||++|++++          .++.|.+||..+++.+.   .+..+....       ..+.|++|++.+++.....++.+.+
T Consensus        76 DG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~  152 (373)
T d2madh_          76 SGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGL  152 (373)
T ss_pred             CCCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEE
Confidence            999999875          35789999999987654   333333322       4578999999766666677788999


Q ss_pred             EeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCC------CccEEEEEEccCCCE
Q 001310          470 WDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAP------GLGCTRMAYSANGRR  543 (1103)
Q Consensus       470 wd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~------~~~i~~~~~s~dg~~  543 (1103)
                      |+..+++......    ...++.+++.. ...+++.+.|+.+.+|+.............      ......+.+++++.+
T Consensus       153 ~~~~~~~~~~~~~----~~~~~~~s~~g-~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (373)
T d2madh_         153 VVQGGSSDDQLLS----SPTCYHIHPGA-PSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI  227 (373)
T ss_pred             eeccCCeEEEEec----cceeEEEecCC-CcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE
Confidence            9988877665443    34566665543 246678899999999999887765543321      123345566676666


Q ss_pred             EEEEecCCCCceeEEEEeCCCCeeEEEEe--ccc-------ccCCceEEEEEcCCCCEE----------EEEeCCCcEEE
Q 001310          544 LFSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQI----------LAAGDDHVIKI  604 (1103)
Q Consensus       544 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l----------~~~~~dg~i~i  604 (1103)
                      ++...     ++.+.+|+..++.......  ...       ........+++++++..+          +....++.+.+
T Consensus       228 ~~~~~-----~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~  302 (373)
T d2madh_         228 VWPVY-----SGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTS  302 (373)
T ss_pred             EEecC-----CceEEEEEcCCCeEEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEE
Confidence            65432     4458888877765432221  111       001223345566665544          34556778999


Q ss_pred             EECCCCeeEEEEcCCCCCCCCceEEEecCCCE--EEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEe
Q 001310          605 WDMNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN  673 (1103)
Q Consensus       605 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~--l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~  673 (1103)
                      ||..+++.+..+...   ..+..++|+|||+.  +++++.|+.|++||+.+++.+..+..+......+++.
T Consensus       303 ~d~~t~~~~~~~~~~---~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~  370 (373)
T d2madh_         303 VTGLVGQTSSQISLG---HDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVM  370 (373)
T ss_pred             EECCCCcEEEEecCC---CCeeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEe
Confidence            999999999888654   34789999999984  4678889999999999999999998776666666554

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.78  E-value=1.7e-17  Score=182.71  Aligned_cols=297  Identities=14%  Similarity=0.094  Sum_probs=198.8

Q ss_pred             CceEEEecCCCceEEEEE----cCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEE
Q 001310          336 SPMSMDFHPVQHTLLLVG----TNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLL  411 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasg----s~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~l  411 (1103)
                      ++.-.+.+|||++++++.    ..+++|.+||..+++.+.+.                   ..+  .+..++|||||++|
T Consensus         3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~-------------------~~g--~~~~~a~SpDg~~l   61 (355)
T d2bbkh_           3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMI-------------------DGG--FLPNPVVADDGSFI   61 (355)
T ss_dssp             CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEE-------------------EEC--SSCEEEECTTSSCE
T ss_pred             CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEE-------------------ECC--CCCceEEcCCCCEE
Confidence            445557799999765553    33567999999999887652                   223  23369999999999


Q ss_pred             EEEe----------CCCeEEEEEecCCCccccceEecccc----ccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCce
Q 001310          412 GVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV----GNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSR  477 (1103)
Q Consensus       412 as~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~----~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~  477 (1103)
                      ++.+          .++.|++||..+++..........+.    .....++|+||++.++++..+.+..+.+||..+++.
T Consensus        62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~  141 (355)
T d2bbkh_          62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF  141 (355)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred             EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence            8753          47889999999987655322111111    223568999999965555556778899999999999


Q ss_pred             eEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec------CCCccEEEEEEccCCCEEEEEecCC
Q 001310          478 TYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       478 ~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      +..+..+......    +. .....++.+.||...++............      .+...+....+++++..++.++.  
T Consensus       142 ~~~~~~~~~~~~~----~~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  214 (355)
T d2bbkh_         142 KRMLDVPDCYHIF----PT-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY--  214 (355)
T ss_dssp             EEEEECCSEEEEE----EE-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred             eeEEecCCcceEe----ec-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence            9888755432211    11 11244555666665555544433322211      12223455678888888887764  


Q ss_pred             CCceeEEEEeCCCCeeEE--EEecccc-------cCCceEEEEEcCCCCEEEEEeCC----------CcEEEEECCCCee
Q 001310          552 EGESFLVEWNESEGAIKR--TYQGLQL-------QHNSVSVVHFDTAKDQILAAGDD----------HVIKIWDMNKVQL  612 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~--~~~~~~~-------~~~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~  612 (1103)
                        ++.+++|+...++...  ....+..       .......+++++++..++....+          ..|.+||..+++.
T Consensus       215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~  292 (355)
T d2bbkh_         215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER  292 (355)
T ss_dssp             --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred             --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence              5679999998875432  1211110       01223457889999988876533          4699999999999


Q ss_pred             EEEEcCCCCCCCCceEEEecCCC--EEEEEECCCeEEEEEcCCCCeeEecccccc
Q 001310          613 LTTIDAGGGLPENPRICFNKNGT--LLAVIANENRIKILETPESNSVDAAGVLSD  665 (1103)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~g~--~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~  665 (1103)
                      +..+....   .+.+++|+|||+  +++++..|+.|++||..+++.+..+..+..
T Consensus       293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~  344 (355)
T d2bbkh_         293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGH  344 (355)
T ss_dssp             EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCS
T ss_pred             EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCC
Confidence            88876542   368999999998  445667799999999999999888765444

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.76  E-value=5.6e-17  Score=178.56  Aligned_cols=316  Identities=10%  Similarity=0.033  Sum_probs=209.7

Q ss_pred             EEEccCCCEEEEEecC-CCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----------CCCcEE
Q 001310          535 MAYSANGRRLFSCGTS-KEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHVIK  603 (1103)
Q Consensus       535 ~~~s~dg~~l~~~~~~-~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~i~  603 (1103)
                      .+.+|||+.+++.... ......+++||..+++.+..+....     ...++|+|||++|++.+          .++.|+
T Consensus         7 ~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~-----~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~   81 (355)
T d2bbkh_           7 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF-----LPNPVVADDGSFIAHASTVFSRIARGERTDYVE   81 (355)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS-----SCEEEECTTSSCEEEEEEEEEETTEEEEEEEEE
T ss_pred             EeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCC-----CCceEEcCCCCEEEEEeCCCccccccCCCCEEE
Confidence            3568999999776432 2235679999999999999887644     33689999999888643          478999


Q ss_pred             EEECCCCeeEEEEcCCCCC-----CCCceEEEecCCCEEEEEE--CCCeEEEEEcCCCCeeEeccccccceeeeEEecCC
Q 001310          604 IWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA--NENRIKILETPESNSVDAAGVLSDNLRKLSVNPIS  676 (1103)
Q Consensus       604 iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~g~~l~~~~--~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~  676 (1103)
                      +||..+++.+..+..+...     .....++|+|++++++++.  .+..+.+|+..+++.+..+..+.....    .+  
T Consensus        82 v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--  155 (355)
T d2bbkh_          82 VFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHI----FP--  155 (355)
T ss_dssp             EECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEE----EE--
T ss_pred             EEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceE----ee--
Confidence            9999999998877543221     2246789999999988775  457899999999887776654322110    00  


Q ss_pred             ceeeeeccCCceEecCCCCCCCccceee-ccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC
Q 001310          677 TVTGAGIANGSVSVNEDPKEDVKPEISV-EAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1103)
Q Consensus       677 ~~~~~~~~~~~~~~~~~~s~d~~~l~s~-~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  755 (1103)
                           ......+.+    ++|++.+... ..++.+.+++.....           ..+...+....+++++..++.++.+
T Consensus       156 -----~~~~~~~~~----~~dg~~~~v~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~  215 (355)
T d2bbkh_         156 -----TAPDTFFMH----CRDGSLAKVAFGTEGTPEITHTEVFH-----------PEDEFLINHPAYSQKAGRLVWPTYT  215 (355)
T ss_dssp             -----EETTEEEEE----ETTSCEEEEECCSSSCCEEEECCCCS-----------CTTSCBCSCCEEETTTTEEEEEBTT
T ss_pred             -----cCCcceEEE----cCCCCEEEEEecCCCeEEEEeccccc-----------ceecceeeeccccCCCCeEEEecCC
Confidence                 001111222    3445444432 233334444333211           1233344556788888889999999


Q ss_pred             ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc-C----------Ce
Q 001310          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS-G----------GV  824 (1103)
Q Consensus       756 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~-d----------g~  824 (1103)
                      +.+.+|++.....            .+++..++..........  .......+++++++..++... +          +.
T Consensus       216 ~~~~v~~~~~~~~------------~~~~~~~~~~~~~~~~~~--~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~  281 (355)
T d2bbkh_         216 GKIHQIDLSSGDA------------KFLPAVEALTEAERADGW--RPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRF  281 (355)
T ss_dssp             SEEEEEECTTSSC------------EECCCEESSCHHHHHTTE--EECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEE
T ss_pred             CeEEEEecCCCcE------------EEEeccCCcccceEeeee--eccceEEEEEeCCCCeEEEEeccCCceeecCCCCe
Confidence            9999999876532            222222221111111100  122345688999999887763 1          36


Q ss_pred             EEEEEcCCceeeEEecCCCCCeeEEEEcCCCCC--EEEEEeCCCeEEEEEcCCceeEEEeccCCCCEEEEEEccC
Q 001310          825 ISLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHSKRVTGLVFSDA  897 (1103)
Q Consensus       825 i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~V~~l~~s~d  897 (1103)
                      |.+||..+++.+.++. +...+.+++|+| ||+  +++++..|++|++||+.+++.+.++.++......+.+.++
T Consensus       282 v~v~d~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~  354 (355)
T d2bbkh_         282 VVVLDAKTGERLAKFE-MGHEIDSINVSQ-DEKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADM  354 (355)
T ss_dssp             EEEEETTTCCEEEEEE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCC
T ss_pred             EEEEeCCCCcEEEEec-CCCCEEEEEEcC-CCCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCC
Confidence            9999999999988876 345688999999 776  4567788999999999999999999877665555655544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=3.5e-16  Score=170.23  Aligned_cols=284  Identities=14%  Similarity=0.158  Sum_probs=188.3

Q ss_pred             eEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEe-CCCeEEEEEec
Q 001310          348 TLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYH  426 (1103)
Q Consensus       348 ~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~-~d~~i~iwd~~  426 (1103)
                      .++++++.|++|+|||+.+...+....                 ...|.+.|..++|||||++|++++ .|+.|++|++.
T Consensus         5 ~v~v~~~~~~~I~v~~~~~~~~l~~~~-----------------~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~   67 (333)
T d1ri6a_           5 TVYIASPESQQIHVWNLNHEGALTLTQ-----------------VVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA   67 (333)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSCEEEEE-----------------EEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEECCCCCcEEEEEEcCCCCeEEEE-----------------EEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence            356888899999999997654433211                 224778999999999999996655 58999999998


Q ss_pred             CCCccccceEeccccccEEEEEEecCCCceEEEEEc-CCCceEEEeCCCCceeEE--eecCCCceEEEEeeecCCccEEE
Q 001310          427 GGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCG-DDKTIKVWDAVTGSRTYS--FEGHGAPVYSLCPHAKENIHFIF  503 (1103)
Q Consensus       427 ~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~-~d~~i~iwd~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~~l~  503 (1103)
                      .+...........+...+..++|+|||+  +|++++ .++.|.+|+.........  ...+...+.++.+++  ++.+++
T Consensus        68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~--~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~  143 (333)
T d1ri6a_          68 PDDGALTFAAESALPGSLTHISTDHQGQ--FVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLW  143 (333)
T ss_dssp             TTTCCEEEEEEEECSSCCSEEEECTTSS--EEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEE
T ss_pred             CCCCcEEEeeecccCCCceEEEEcCCCC--EEeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeee
Confidence            7654332222223445678899999999  555555 577899999877665433  345666777787754  566666


Q ss_pred             EEE-CCCeEEEEEcCCCCeeEE------ecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCC--Cee--EEEEe
Q 001310          504 SIS-VDGKIKAWLYDSLGARVD------YDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESE--GAI--KRTYQ  572 (1103)
Q Consensus       504 s~~-~dg~i~iwd~~~~~~~~~------~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~--~~~--~~~~~  572 (1103)
                      .++ .+..+.+|+.........      ..........++|++++.+++.....   .....+|+...  ...  .....
T Consensus       144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~~~~  220 (333)
T d1ri6a_         144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNEL---NSSVDVWELKDPHGNIECVQTLD  220 (333)
T ss_dssp             EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETT---TTEEEEEESSCTTSCCEEEEEEE
T ss_pred             ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccc---cCceEEEeecccccceeeeeeee
Confidence            665 456799999876554331      22334466889999999998877643   23355565433  221  11221


Q ss_pred             ---cccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcC-CCCCCCCceEEEecCCCEEEEEEC-CCeE
Q 001310          573 ---GLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA-GGGLPENPRICFNKNGTLLAVIAN-ENRI  646 (1103)
Q Consensus       573 ---~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~-dg~i  646 (1103)
                         ...........+++++++++++.. ..++.+.+|++........... ......+..++|+|||++|++++. ++.|
T Consensus       221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v  300 (333)
T d1ri6a_         221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI  300 (333)
T ss_dssp             CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred             eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence               111123456778899999987764 5678899998876543322211 111234678999999999887754 6899


Q ss_pred             EEEEc--CCCC
Q 001310          647 KILET--PESN  655 (1103)
Q Consensus       647 ~iw~~--~~~~  655 (1103)
                      .+|++  .++.
T Consensus       301 ~v~~id~~tG~  311 (333)
T d1ri6a_         301 SVYEIVGEQGL  311 (333)
T ss_dssp             EEEEEETTTTE
T ss_pred             EEEEEECCCCc
Confidence            99955  4553

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.75  E-value=3.2e-16  Score=170.55  Aligned_cols=294  Identities=11%  Similarity=0.143  Sum_probs=193.6

Q ss_pred             EEEEEECCCeEEEEEcCCCCeeE--EecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccC
Q 001310          501 FIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQH  578 (1103)
Q Consensus       501 ~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~  578 (1103)
                      .+++++.|++|++|+++......  ....+...+..++|+|||++|++++.   .++.|++|++........+..+....
T Consensus         6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~---~d~~i~~~~i~~~~~~~~~~~~~~~~   82 (333)
T d1ri6a_           6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVR---PEFRVLAYRIAPDDGALTFAAESALP   82 (333)
T ss_dssp             EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEECS
T ss_pred             EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEeeecccC
Confidence            46788899999999998665433  33356678899999999999977663   25679999988765444444333233


Q ss_pred             CceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC-CCeEEEEEcCCCCe
Q 001310          579 NSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN-ENRIKILETPESNS  656 (1103)
Q Consensus       579 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-dg~i~iw~~~~~~~  656 (1103)
                      ..+..++|+|||+++++++ .++.|.+|+..............+...+.++.++|+++++++++. +..+.+|+......
T Consensus        83 ~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~~~  162 (333)
T d1ri6a_          83 GSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGH  162 (333)
T ss_dssp             SCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSC
T ss_pred             CCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccCCc
Confidence            5677899999999999987 477899999887766555543333455788999999999888775 45788888765432


Q ss_pred             eEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCcccccc
Q 001310          657 VDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANK  736 (1103)
Q Consensus       657 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~  736 (1103)
                      .........                                                                .......
T Consensus       163 ~~~~~~~~~----------------------------------------------------------------~~~~g~~  178 (333)
T d1ri6a_         163 LVAQDPAEV----------------------------------------------------------------TTVEGAG  178 (333)
T ss_dssp             EEEEEEEEE----------------------------------------------------------------ECSTTCC
T ss_pred             ceeeeceee----------------------------------------------------------------eeecCCC
Confidence            221110000                                                                0012234


Q ss_pred             EEEEEEecCCcEEEEeec-CceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310          737 ISRLTYNNGGQAIFALAS-NGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1103)
Q Consensus       737 i~~~~~s~~g~~l~~~~~-dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  815 (1103)
                      ...++|++++..++.... .+...+|++...........      .+....          ...........+++++|++
T Consensus       179 p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~----------~~~~~~~~~~~~~~s~d~~  242 (333)
T d1ri6a_         179 PRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQ------TLDMMP----------ENFSDTRWAADIHITPDGR  242 (333)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEE------EEECSC----------TTCCSCCCEEEEEECTTSS
T ss_pred             ccEEEEeccceeEEeeccccCceEEEeecccccceeeee------eeeeee----------cCCCccccceeEEEecccC
Confidence            567889999888766654 46677777544321100000      000000          0112445667889999999


Q ss_pred             EEEEEc--CCeEEEEEcCCceeeEEe---cCCCCCeeEEEEcCCCCCEEEEEe-CCCeEEEEE--cCCcee
Q 001310          816 YLFSAS--GGVISLYIVMTFKTILTI---MPPSPTATSLAFNPHDNNVIAIGM-DDSTILIYN--ARSSEV  878 (1103)
Q Consensus       816 ~l~~~~--dg~i~iwd~~~~~~~~~~---~~~~~~i~~l~~s~~d~~~lasg~-~dg~v~iwd--~~~~~~  878 (1103)
                      ++....  ++.+.+|++........+   ......+..++|+| ||++|++++ .++.|.+|+  ..+|++
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~sp-DGk~l~va~~~~~~v~v~~id~~tG~l  312 (333)
T d1ri6a_         243 HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDH-SGKYLIAAGQKSHHISVYEIVGEQGLL  312 (333)
T ss_dssp             EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECT-TSSEEEEECTTTCEEEEEEEETTTTEE
T ss_pred             ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeC-CCCEEEEEECCCCeEEEEEEECCCCcE
Confidence            888775  588999998755433332   23445678899999 888877665 568999995  456654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.60  E-value=1.8e-14  Score=158.73  Aligned_cols=292  Identities=11%  Similarity=0.008  Sum_probs=194.0

Q ss_pred             cCCcCceEEEecCCCceEEE--EEcCCCc--EEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCC
Q 001310          332 EGSSSPMSMDFHPVQHTLLL--VGTNVGD--TGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPD  407 (1103)
Q Consensus       332 ~h~~~V~~v~~spdg~~lla--sgs~d~~--v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spd  407 (1103)
                      .+.+....++.++|++...+  ....++.  |.+||..+++.+..                   ..++...  .++|+||
T Consensus        17 ~~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spD   75 (368)
T d1mdah_          17 ASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHS   75 (368)
T ss_dssp             CCCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTT
T ss_pred             ccCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCC
Confidence            34556677788899885333  3444454  66779999988765                   2223333  5899999


Q ss_pred             CCEEEEEe----------CCCeEEEEEecCCCccccceEecccc-------ccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          408 GSLLGVAY----------SKHIVQLYAYHGGSDARQQLEIDAHV-------GNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       408 g~~las~~----------~d~~i~iwd~~~~~~~~~~~~l~~h~-------~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      |++|++.+          .|++|.+||..+++.+..   +..+.       .....++|+|||++ ++++...++.+.+|
T Consensus        76 g~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~  151 (368)
T d1mdah_          76 GSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGL  151 (368)
T ss_dssp             SSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEE
T ss_pred             CCEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEE
Confidence            99999864          367899999999876542   22221       12346899999995 33444568999999


Q ss_pred             eCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec------CCCccEEEEEEccCCCEE
Q 001310          471 DAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD------APGLGCTRMAYSANGRRL  544 (1103)
Q Consensus       471 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~------~~~~~i~~~~~s~dg~~l  544 (1103)
                      |+.+++.+..+..+.....    .+. ....++..+.||.+.+|++..........      .+...+....+.+++..+
T Consensus       152 d~~~~~~~~~~~~~~~~~~----~~~-~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~  226 (368)
T d1mdah_         152 SVPGASDDQLTKSASCFHI----HPG-AAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLV  226 (368)
T ss_dssp             EETTTEEEEEEECSSCCCC----EEE-ETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEE
T ss_pred             ECCCCcEeEEeeccCcceE----ccC-CCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEE
Confidence            9999999988876654422    112 22467778889999999887665543321      222344567788888776


Q ss_pred             EEEecCCCCceeEEEEeCCCCeeEEEEe--ccc-------ccCCceEEEEEcCCCCEEEEEeCC---------CcEEEEE
Q 001310          545 FSCGTSKEGESFLVEWNESEGAIKRTYQ--GLQ-------LQHNSVSVVHFDTAKDQILAAGDD---------HVIKIWD  606 (1103)
Q Consensus       545 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~-------~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd  606 (1103)
                      ....      +.+++++...+.......  ...       ........+++++++..++....+         ..|.+||
T Consensus       227 ~~~~------~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D  300 (368)
T d1mdah_         227 WAVA------SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVT  300 (368)
T ss_dssp             ECBS------SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEE
T ss_pred             EecC------CCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEE
Confidence            6542      235666665544332211  110       001123357788998887765322         3589999


Q ss_pred             CCCCeeEEEEcCCCCCCCCceEEEecCCCE--EEEEECCCeEEEEEcCCCCeeEeccc
Q 001310          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTL--LAVIANENRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~--l~~~~~dg~i~iw~~~~~~~~~~~~~  662 (1103)
                      ..+++.+..+...   ..+..++|+|||+.  ++++..++.|++||..+++.+..+..
T Consensus       301 ~~t~~~~~~~~~~---~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~  355 (368)
T d1mdah_         301 ASVGQTSGPISNG---HDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVEL  355 (368)
T ss_dssp             SSSCCEEECCEEE---EEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCC
T ss_pred             CCCCcEeEEecCC---CceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEEC
Confidence            9999988877643   24688999999973  45666789999999999998887764

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.58  E-value=4.6e-13  Score=152.89  Aligned_cols=220  Identities=13%  Similarity=0.089  Sum_probs=138.6

Q ss_pred             EEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC--
Q 001310          339 SMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS--  416 (1103)
Q Consensus       339 ~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~--  416 (1103)
                      .+.|.+|++ ++..  .|+.+.+||+.+++....              +....+..|...|.++.|||||++||+++.  
T Consensus        21 ~~~W~~d~~-~~~~--~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~   83 (470)
T d2bgra1          21 SLRWISDHE-YLYK--QENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV   83 (470)
T ss_dssp             CCEECSSSE-EEEE--SSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred             CCEeCCCCE-EEEE--cCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence            478999998 5554  478899999999986532              122236678889999999999999998853  


Q ss_pred             -------CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC----
Q 001310          417 -------KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG----  485 (1103)
Q Consensus       417 -------d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~----  485 (1103)
                             ++.+.|||+.+++..    .+..|...+..+.|||||+  .++.. .++.+++|+..+++..+....+.    
T Consensus        84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~  156 (470)
T d2bgra1          84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII  156 (470)
T ss_dssp             ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred             ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence                   467899999998643    4678889999999999999  45654 47789999999888765443221    


Q ss_pred             --------------CceEEEEeeecCCccEEEEEECCCe-EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecC
Q 001310          486 --------------APVYSLCPHAKENIHFIFSISVDGK-IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTS  550 (1103)
Q Consensus       486 --------------~~v~~~~~~~~~~~~~l~s~~~dg~-i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~  550 (1103)
                                    +....+.|  ++||..|+....|.+ +..|.+......   .........+.+...+..       
T Consensus       157 ~~g~~d~~~~~~~~~~~~~~~w--SPDGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~-------  224 (470)
T d2bgra1         157 YNGITDWVYEEEVFSAYSALWW--SPNGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV-------  224 (470)
T ss_dssp             EESBCCHHHHHHTSSSSBCEEE--CTTSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred             cccccceeeeeeecCCccccEE--CCCCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence                          22233445  568888888876544 444433211000   001111222222222211       


Q ss_pred             CCCceeEEEEeCCCCeeEEEEeccc--------ccCCceEEEEEcCCCCEEEE
Q 001310          551 KEGESFLVEWNESEGAIKRTYQGLQ--------LQHNSVSVVHFDTAKDQILA  595 (1103)
Q Consensus       551 ~~~~~~i~iwd~~~~~~~~~~~~~~--------~~~~~v~~~~~~~~~~~l~~  595 (1103)
                       .....+.+|++.++........+.        .....+..+.|.+++..++.
T Consensus       225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~  276 (470)
T d2bgra1         225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQ  276 (470)
T ss_dssp             -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEE
T ss_pred             -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEE
Confidence             124457888887665433222111        11234667888888765554

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.57  E-value=1.4e-13  Score=151.47  Aligned_cols=306  Identities=13%  Similarity=-0.006  Sum_probs=190.9

Q ss_pred             EEEEEccCCCEEEEE-ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----------CCCc
Q 001310          533 TRMAYSANGRRLFSC-GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----------DDHV  601 (1103)
Q Consensus       533 ~~~~~s~dg~~l~~~-~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----------~dg~  601 (1103)
                      ..++..++++..... .....+...+++||..+++.+....++.   .  ..++|+|||+.+++.+          .|+.
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~---~--~~~a~spDg~~i~~~~~~~~~~~~g~~d~~   97 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAF---L--SLAVAGHSGSDFALASTSFARSAKGKRTDY   97 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECT---T--CEEEECTTSSCEEEEEEEETTTTSSSEEEE
T ss_pred             cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCC---C--CcceECCCCCEEEEEcccCccccccccCCe
Confidence            344567788865433 2344556779999999999999888755   3  3588999999998754          3678


Q ss_pred             EEEEECCCCeeEEEEcCCCCC-----CCCceEEEecCCCEEEEEE-CCCeEEEEEcCCCCeeEeccccccceeeeEEecC
Q 001310          602 IKIWDMNKVQLLTTIDAGGGL-----PENPRICFNKNGTLLAVIA-NENRIKILETPESNSVDAAGVLSDNLRKLSVNPI  675 (1103)
Q Consensus       602 i~iwd~~~~~~~~~~~~~~~~-----~~v~~v~~s~~g~~l~~~~-~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~  675 (1103)
                      |.+||..+++.+..+..+...     .....++|+|||++++++. .++.+.+||+.+++....+..+....    +.|.
T Consensus        98 v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~----~~~~  173 (368)
T d1mdah_          98 VEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFH----IHPG  173 (368)
T ss_dssp             EEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCC----CEEE
T ss_pred             EEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcce----EccC
Confidence            999999999999887654221     2245799999999998876 57999999999998777665433221    1110


Q ss_pred             CceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC
Q 001310          676 STVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN  755 (1103)
Q Consensus       676 ~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d  755 (1103)
                      +       ....+++    ++||..++....++....|...          ......+...+....+.+++..+...  +
T Consensus       174 ~-------~~~~v~~----~~Dg~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~g~~~~~~--~  230 (368)
T d1mdah_         174 A-------AATHYLG----SCPASLAASDLAAAPAAAGIVG----------AQCTGAQNCSSQAAQANYPGMLVWAV--A  230 (368)
T ss_dssp             E-------TTEEECC----CCTTSCEEEECCSSCCCCEECC----------CCSCTTSCBCSCCEEETTTTEEEECB--S
T ss_pred             C-------CceEEEE----cCCCCEEEEEecCCceeeeeee----------cccccccccceeecccccCcEEEEec--C
Confidence            0       0001111    3445444444433333332211          11111233344456667777644433  4


Q ss_pred             ceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEc--C--------CeE
Q 001310          756 GVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSAS--G--------GVI  825 (1103)
Q Consensus       756 g~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~--d--------g~i  825 (1103)
                      +.+.++++....            +.+++...+..........  .......+++++++..+....  +        ..|
T Consensus       231 ~~v~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~--~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v  296 (368)
T d1mdah_         231 SSILQGDIPAAG------------ATMKAAIDGNESGRKADNF--RSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             SCCEEEECCSSC------------CEEECCCCSSCTHHHHTTE--EECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             CCEEEEeecCCc------------eEEEeecccccceeeeeee--cCCCceeEEEcCCCCEEEEEecCCCceeecCCceE
Confidence            455555554432            2222222221111100000  112334588999998876653  1        358


Q ss_pred             EEEEcCCceeeEEecCCCCCeeEEEEcCCCCC--EEEEEeCCCeEEEEEcCCceeEEEeccCC
Q 001310          826 SLYIVMTFKTILTIMPPSPTATSLAFNPHDNN--VIAIGMDDSTILIYNARSSEVISKLEGHS  886 (1103)
Q Consensus       826 ~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~--~lasg~~dg~v~iwd~~~~~~~~~l~~h~  886 (1103)
                      .+||..+++.+.++. +...+.+++|+| |++  +++++..|+.|++||..+++.+..++...
T Consensus       297 ~v~D~~t~~~~~~~~-~~~~~~~~a~sp-DG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         297 SSVTASVGQTSGPIS-NGHDSDAIIAAQ-DGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             EEEESSSCCEEECCE-EEEEECEEEECC-SSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EEEECCCCcEeEEec-CCCceeEEEECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence            999999999888776 345788999999 665  45677789999999999999999887543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.56  E-value=3.2e-13  Score=154.24  Aligned_cols=370  Identities=11%  Similarity=0.036  Sum_probs=200.2

Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEeccc--ccCCceEEEEEcCCCCEEEEEeC---------CCcE
Q 001310          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQ--LQHNSVSVVHFDTAKDQILAAGD---------DHVI  602 (1103)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~---------dg~i  602 (1103)
                      .+.|.++++++...      ++.+.+||..+++....+..+.  .+...|.++.|+||+++|+.++.         ++.+
T Consensus        21 ~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~   94 (470)
T d2bgra1          21 SLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASY   94 (470)
T ss_dssp             CCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEE
T ss_pred             CCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceE
Confidence            46788999877642      3459999999999877666543  22357899999999999998753         5678


Q ss_pred             EEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeee
Q 001310          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAG  682 (1103)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  682 (1103)
                      .+||+.+++... +..+  ...+..+.|||||+.+|... ++.+.+|+..++............+.   ++         
T Consensus        95 ~l~d~~~~~~~~-l~~~--~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~---~~---------  158 (470)
T d2bgra1          95 DIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDII---YN---------  158 (470)
T ss_dssp             EEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTE---EE---------
T ss_pred             EEEECCCCcccc-cccC--CccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcc---cc---------
Confidence            999999987543 3333  34578999999999999965 56899999998866654432211110   00         


Q ss_pred             ccCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCc-eEEEe
Q 001310          683 IANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNG-VHLMW  761 (1103)
Q Consensus       683 ~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg-~i~vw  761 (1103)
                                           +..|     |...              ....+....+.|||||+.|+....|. .+..|
T Consensus       159 ---------------------g~~d-----~~~~--------------~~~~~~~~~~~wSPDGk~ia~~~~d~~~v~~~  198 (470)
T d2bgra1         159 ---------------------GITD-----WVYE--------------EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLI  198 (470)
T ss_dssp             ---------------------SBCC-----HHHH--------------HHTSSSSBCEEECTTSSEEEEEEEECTTCCEE
T ss_pred             ---------------------cccc-----eeee--------------eeecCCccccEECCCCCccceeEecCCcCceE
Confidence                                 0000     0000              00011122334555555554444331 12222


Q ss_pred             ecCCCcc-------------ccccccccccCCeeecCCCCCceeeccC-------CCCCCCCCeeEEEEecCCCEEEEEc
Q 001310          762 RWPRNDL-------------TLSTEATTKVPPRLYQPRHGPQFMVNDT-------TDSNSQEAVPCFALSKNDAYLFSAS  821 (1103)
Q Consensus       762 ~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~v~~l~~s~d~~~l~~~~  821 (1103)
                      .+.....             ...+.......+.+|+...+.......-       ........+..+.+.++++.++...
T Consensus       199 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~  278 (470)
T d2bgra1         199 EYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWL  278 (470)
T ss_dssp             EEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEE
T ss_pred             EEEeeccCCCCCCeeeeeccccccccCCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEe
Confidence            2211100             0111111222334444444332111000       0001234566788999988777653


Q ss_pred             --C-C--eEEEE--EcCCceeeEEec-------------CCCCCeeEEEEcCC-CCCEEEEEeCCCeEEE--EEcCCcee
Q 001310          822 --G-G--VISLY--IVMTFKTILTIM-------------PPSPTATSLAFNPH-DNNVIAIGMDDSTILI--YNARSSEV  878 (1103)
Q Consensus       822 --d-g--~i~iw--d~~~~~~~~~~~-------------~~~~~i~~l~~s~~-d~~~lasg~~dg~v~i--wd~~~~~~  878 (1103)
                        . +  .+.++  |..++.......             .+...  ...++++ ++.+++....||...|  |+...+. 
T Consensus       279 ~r~~~~~~~~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~-  355 (470)
T d2bgra1         279 RRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPS--EPHFTLDGNSFYKIISNEEGYRHICYFQIDKKD-  355 (470)
T ss_dssp             ESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCC--CCEECTTSSEEEEEEECTTSCEEEEEEETTCSC-
T ss_pred             eccCCceEEEEEEecCCCCcEEEEEEEeeeeeeccceeecccCC--CceeeecCCCcEEEEeccCcCceeEEEeccCCc-
Confidence              1 2  23444  444554432211             11111  2234442 3445666777775544  5555444 


Q ss_pred             EEEeccCCCCEEEEEEccCCCEE-EEEeCCC----eEEEE--EcCCCceeeeeeee-cCCCcccCCCCceEEEEcCCCCE
Q 001310          879 ISKLEGHSKRVTGLVFSDALNIL-VSSGGDA----QIFVW--DVDGWGIQTCRSLQ-TPDGVMTLAPSETHIQFHKDQTR  950 (1103)
Q Consensus       879 ~~~l~~h~~~V~~l~~s~dg~~l-~s~s~dg----~I~iw--d~~~~~~~~~~~~~-~~~~~~~~~~~v~~l~fs~dg~~  950 (1103)
                      ...+..+...|..+ ++++++.+ +++..++    .-.||  ++..+...  .++. ...++.   ..+.+++|||||++
T Consensus       356 ~~~lt~g~~~v~~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~~--~~lt~~~~~~~---~~~~s~~fSpdgky  429 (470)
T d2bgra1         356 CTFITKGTWEVIGI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTKV--TCLSCELNPER---CQYYSVSFSKEAKY  429 (470)
T ss_dssp             CEESCCSSSCEEEE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTCE--EESSTTTSTTT---BCBEEEEECTTSSE
T ss_pred             eeeeccCCeeEEEE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCce--eEecccccCCC---CCEEEEEECCCCCE
Confidence            45555455667776 44445444 4444332    12344  44443322  2232 222333   26889999999999


Q ss_pred             EEEEeC----CeEEEEECCCceEEEEee
Q 001310          951 FLLVHE----THLAIYEAEELTCLKQWF  974 (1103)
Q Consensus       951 l~~~~d----~~v~iwd~~~~~~~~~~~  974 (1103)
                      ++....    -.+.+|+..+|+.+..+.
T Consensus       430 ~~~~~s~~~~P~~~l~~~~~g~~v~~le  457 (470)
T d2bgra1         430 YQLRCSGPGLPLYTLHSSVNDKGLRVLE  457 (470)
T ss_dssp             EEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred             EEEEecCCCCCeEEEEECCCCCEEEEEe
Confidence            886422    358999999999988753

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.52  E-value=1.6e-15  Score=164.03  Aligned_cols=360  Identities=10%  Similarity=0.002  Sum_probs=219.0

Q ss_pred             CCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCeEEEEE
Q 001310          345 VQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHIVQLYA  424 (1103)
Q Consensus       345 dg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~i~iwd  424 (1103)
                      |+-+.+++|+.+|+|+||++.+++.+.+.                        +    .|+|++... .|..+.+.+++.
T Consensus         9 De~y~f~Sgg~sG~V~V~dlpS~r~l~~I------------------------p----Vfspd~~~g-~g~~~es~~vl~   59 (441)
T d1qnia2           9 DEYYGFWSGGHQGEVRVLGVPSMRELMRI------------------------P----VFNVDSATG-WGITNESKEILG   59 (441)
T ss_dssp             CSEEEEEECBTTCCEEEEEETTTEEEEEE------------------------C----SSSBCTTTC-TTTSHHHHHHHC
T ss_pred             CCEEEEEeCCCCCcEEEEeCCCCcEEEEE------------------------E----eEcCCCCEE-EEECCccceEEe
Confidence            44456788889999999999999887641                        1    278877642 232222222221


Q ss_pred             ecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeec-CCCceEEEEeeecCCccEEE
Q 001310          425 YHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIF  503 (1103)
Q Consensus       425 ~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~  503 (1103)
                        ++....   .-..|.-......++|||++ ++++...+.+|.++|+.++++...+.- +...+..++|++.++-.+++
T Consensus        60 --~~~~~~---~gd~hhP~~s~t~gtpDGr~-lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~  133 (441)
T d1qnia2          60 --GDQQYL---NGDCHHPHISMTDGRYDGKY-LFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVF  133 (441)
T ss_dssp             --SSSCCS---CCCBCCCEEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEE
T ss_pred             --cccccc---cCcccCCCcceecccCCCCE-EEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEE
Confidence              111111   12235455667778999995 456677888999999999999887753 56778889997765545666


Q ss_pred             EEECCC-----------------eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCe
Q 001310          504 SISVDG-----------------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGA  566 (1103)
Q Consensus       504 s~~~dg-----------------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~  566 (1103)
                      ..+.+.                 .+..+|..+.+........ .....+.++|||+++++.+.+.+.   +..++..+.+
T Consensus       134 ~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v~~qI~v~-~~p~~v~~spdGk~a~vt~~nse~---~~~id~~t~~  209 (441)
T d1qnia2         134 CNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDVAWQVIVD-GNLDNTDADYTGKYATSTCYNSER---AVDLAGTMRN  209 (441)
T ss_dssp             EEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSEEEEEEES-SCCCCEEECSSSSEEEEEESCTTC---CSSHHHHTCS
T ss_pred             eccCCcccccCcccccccccccceEEeecCccceeeEEEecC-CCccceEECCCCCEEEEEecCCCc---eEEEeccCcc
Confidence            655443                 2345777777666555443 346779999999999988754321   2223433333


Q ss_pred             eEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEE-EECCCe
Q 001310          567 IKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAV-IANENR  645 (1103)
Q Consensus       567 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~-~~~dg~  645 (1103)
                      ....+....    .-..+.+.|+|+++.. +.++.+.+++......+..++....   ...+.++|||+++++ +..+++
T Consensus       210 ~~d~i~v~n----~p~~~~~~~dGk~~~v-~~~~v~vvd~~~~~~v~~~IPvgks---PhGv~vSPDGkyl~~~~~~~~t  281 (441)
T d1qnia2         210 DRDWVVVFN----VERIAAAVKAGNFKTI-GDSKVPVVDGRGESEFTRYIPVPKN---PHGLNTSPDGKYFIANGKLSPT  281 (441)
T ss_dssp             SBCEEEEEE----HHHHHHHHHTTCCBCC-TTCCCCEEECSSSCSSEEEECCBSS---CCCEEECTTSCEEEEECTTSSB
T ss_pred             eEEEEEeCC----ccceEEEecCCCEEEe-CCCCcEEEEcccCCceEEEEeCCCC---ccCceECCCCCEEEEeCCcCCc
Confidence            322222111    1122345688887655 4467888888877777877776433   578999999998765 566899


Q ss_pred             EEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCccceeeccccccccccccccCCcccee
Q 001310          646 IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQS  725 (1103)
Q Consensus       646 i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~  725 (1103)
                      +.+||+....  ..+..+.....++...+                                                   
T Consensus       282 vsv~d~~k~~--~~~~~~~~~~~~~~~~~---------------------------------------------------  308 (441)
T d1qnia2         282 VSVIAIDKLD--DLFEDKIELRDTIVAEP---------------------------------------------------  308 (441)
T ss_dssp             EEEEEGGGHH--HHTTTSSCGGGGEEECC---------------------------------------------------
T ss_pred             EEEEEeehhh--hHhhccCCcceEEEeec---------------------------------------------------
Confidence            9999987421  11111111111111110                                                   


Q ss_pred             eeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCe
Q 001310          726 LLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAV  805 (1103)
Q Consensus       726 ~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v  805 (1103)
                          .  ..-.....+|.++|..+.+..-|..|..|++........+..    .-.+|+...-.      . ..+|...+
T Consensus       309 ----~--~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~----~~~v~~~~~v~------y-~~GH~~~~  371 (441)
T d1qnia2         309 ----E--LGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDR----VNYIRQKLDVQ------Y-QPGHNHAS  371 (441)
T ss_dssp             ----B--CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCC----CCCEEEEEECS------S-CEEEEEET
T ss_pred             ----c--cccCcccceecCCceEEEcccccceEEEeccchhhhhhccCC----CceeEeccccc------c-CCCCCccc
Confidence                0  111224467999998888888899999999753221111111    11122210000      0 01577777


Q ss_pred             eEEEEecCCCEEEEEc
Q 001310          806 PCFALSKNDAYLFSAS  821 (1103)
Q Consensus       806 ~~l~~s~d~~~l~~~~  821 (1103)
                      .+.+++|||++|++++
T Consensus       372 ~~~t~~pdGk~l~s~~  387 (441)
T d1qnia2         372 LTESRDADGKWLVVLS  387 (441)
T ss_dssp             TTTSTTCCCCEEEEEE
T ss_pred             cccccCCCCcEEEecC
Confidence            7888999999999995

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.49  E-value=8.9e-14  Score=150.30  Aligned_cols=301  Identities=10%  Similarity=0.042  Sum_probs=193.6

Q ss_pred             EEEEECCCeEEEEEcCCCCeeEEecC------------------------------CCccEEEEEEccCCCEEEEEecCC
Q 001310          502 IFSISVDGKIKAWLYDSLGARVDYDA------------------------------PGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       502 l~s~~~dg~i~iwd~~~~~~~~~~~~------------------------------~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      +++++.+|.|++|++.+++....+..                              |........++|||++|++...  
T Consensus        14 f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~--   91 (441)
T d1qnia2          14 FWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDK--   91 (441)
T ss_dssp             EEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEET--
T ss_pred             EEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcC--
Confidence            66778899999999988776665422                              1112344456799999988764  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCE--EEEEeCCC-----------------cEEEEECCCCee
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQ--ILAAGDDH-----------------VIKIWDMNKVQL  612 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg-----------------~i~iwd~~~~~~  612 (1103)
                       .+.+|.++|+.+++..+.+.-..  ...+..++|+|++++  +++.+++.                 .+..+|..+.+.
T Consensus        92 -~~~rVavIDl~t~k~~~ii~iP~--g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~v  168 (441)
T d1qnia2          92 -ANTRVARIRLDIMKTDKITHIPN--VQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMDV  168 (441)
T ss_dssp             -TTTEEEEEETTTTEEEEEEECTT--CCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCSE
T ss_pred             -CCCEEEEEECCCCcEeeEEecCC--CCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCcccee
Confidence             36679999999999888776433  367899999999984  44444332                 235578888777


Q ss_pred             EEEEcCCCCCCCCceEEEecCCCEEEEEECCCe-EEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEec
Q 001310          613 LTTIDAGGGLPENPRICFNKNGTLLAVIANENR-IKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVN  691 (1103)
Q Consensus       613 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~-i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  691 (1103)
                      ...+....   ....++|+|+|+++++.+.+.. +..++..+.                                     
T Consensus       169 ~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~-------------------------------------  208 (441)
T d1qnia2         169 AWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMR-------------------------------------  208 (441)
T ss_dssp             EEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTC-------------------------------------
T ss_pred             eEEEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCc-------------------------------------
Confidence            77766543   2578889999988887765431 100000000                                     


Q ss_pred             CCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccc
Q 001310          692 EDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLS  771 (1103)
Q Consensus       692 ~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~  771 (1103)
                                                                 ..+         .         .+.+.+         
T Consensus       209 -------------------------------------------~~~---------d---------~i~v~n---------  218 (441)
T d1qnia2         209 -------------------------------------------NDR---------D---------WVVVFN---------  218 (441)
T ss_dssp             -------------------------------------------SSB---------C---------EEEEEE---------
T ss_pred             -------------------------------------------ceE---------E---------EEEeCC---------
Confidence                                                       000         0         000100         


Q ss_pred             cccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEE
Q 001310          772 TEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAF  851 (1103)
Q Consensus       772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~  851 (1103)
                                                      ....++++|||+++..++++.+.+++....+.+..+..+. ....+++
T Consensus       219 --------------------------------~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvgk-sPhGv~v  265 (441)
T d1qnia2         219 --------------------------------VERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNT  265 (441)
T ss_dssp             --------------------------------HHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCBS-SCCCEEE
T ss_pred             --------------------------------ccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCCC-CccCceE
Confidence                                            0012235677777766666777777777777777776544 3578999


Q ss_pred             cCCCCCEE-EEEeCCCeEEEEEcCCcee--------EEEeccC---CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCC-
Q 001310          852 NPHDNNVI-AIGMDDSTILIYNARSSEV--------ISKLEGH---SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGW-  918 (1103)
Q Consensus       852 s~~d~~~l-asg~~dg~v~iwd~~~~~~--------~~~l~~h---~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~-  918 (1103)
                      +| ||+++ +++..+++|.+||+.+...        ...+.++   .-.....+|.++|..+.|.+.|..|..|++... 
T Consensus       266 SP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~kw~~~~~~  344 (441)
T d1qnia2         266 SP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVCKWNIADAI  344 (441)
T ss_dssp             CT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEHHHHH
T ss_pred             CC-CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEEEeccchhh
Confidence            99 77765 5678899999999875321        0111111   112344689999999999999999999998521 


Q ss_pred             ---------ceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE
Q 001310          919 ---------GIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV  954 (1103)
Q Consensus       919 ---------~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~  954 (1103)
                               .......++-..||..   .+.+.+|+|||+||+++
T Consensus       345 ~~~~~~~~~~v~~~~~v~y~~GH~~---~~~~~t~~pdGk~l~s~  386 (441)
T d1qnia2         345 KHYNGDRVNYIRQKLDVQYQPGHNH---ASLTESRDADGKWLVVL  386 (441)
T ss_dssp             HHHTTCCCCCEEEEEECSSCEEEEE---ETTTTSTTCCCCEEEEE
T ss_pred             hhhccCCCceeEeccccccCCCCCc---cccccccCCCCcEEEec
Confidence                     1122222333346654   56677899999999996

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.30  E-value=4.7e-09  Score=113.53  Aligned_cols=160  Identities=13%  Similarity=0.139  Sum_probs=104.0

Q ss_pred             CCeeEEEEecCCCEEEEEc--CCeEEEEEcCC-ceee--EEe--cCCCCCeeEEEEcCCCCCEEEE-EeCCCeEEEEEcC
Q 001310          803 EAVPCFALSKNDAYLFSAS--GGVISLYIVMT-FKTI--LTI--MPPSPTATSLAFNPHDNNVIAI-GMDDSTILIYNAR  874 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~-~~~~--~~~--~~~~~~i~~l~~s~~d~~~las-g~~dg~v~iwd~~  874 (1103)
                      ..+.+++|+|||+++++++  .+.|.+|+... +...  ...  .......+.++|+| +++++.+ ...+++|.+|++.
T Consensus       145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~  223 (365)
T d1jofa_         145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred             CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence            3467899999999998887  36788887653 2221  222  22456789999999 7777655 4567899999997


Q ss_pred             CceeEE-----Eec--------------cCCCCEEEEEEccCCCEEEEEeC------CCeEEEEEcCCC-ceeeeeee-e
Q 001310          875 SSEVIS-----KLE--------------GHSKRVTGLVFSDALNILVSSGG------DAQIFVWDVDGW-GIQTCRSL-Q  927 (1103)
Q Consensus       875 ~~~~~~-----~l~--------------~h~~~V~~l~~s~dg~~l~s~s~------dg~I~iwd~~~~-~~~~~~~~-~  927 (1103)
                      .++...     ...              .+......+.++|||++|+++..      .+.|..|++... .......+ .
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~  303 (365)
T d1jofa_         224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP  303 (365)
T ss_dssp             TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred             CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence            654221     111              12234567899999999887643      224777777653 22221122 1


Q ss_pred             cCCCcccCCCCceEEEEcC-CCCEEEEE--eCCeEEEEECCCc
Q 001310          928 TPDGVMTLAPSETHIQFHK-DQTRFLLV--HETHLAIYEAEEL  967 (1103)
Q Consensus       928 ~~~~~~~~~~~v~~l~fs~-dg~~l~~~--~d~~v~iwd~~~~  967 (1103)
                      ....    ......++|+| +|++|+++  .++.|.+|+++..
T Consensus       304 ~~~~----G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         304 TPTS----GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             CSSC----CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             EEcC----CCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence            1111    12467899998 89999886  6789999987644

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=2.1e-09  Score=120.09  Aligned_cols=374  Identities=9%  Similarity=-0.004  Sum_probs=207.4

Q ss_pred             EEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe---------CCCcEEEEE
Q 001310          536 AYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG---------DDHVIKIWD  606 (1103)
Q Consensus       536 ~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---------~dg~i~iwd  606 (1103)
                      .|.+++.++..     +.++.|.+||+.+++....+.........+....|+||+++++...         ..+.+.++|
T Consensus        23 ~W~~~~~~~~~-----~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d   97 (465)
T d1xfda1          23 KWISDTEFIYR-----EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (465)
T ss_dssp             CBSSSSCBCCC-----CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             EEeCCCcEEEE-----eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence            57778776643     2244699999998877555555443344677888999999988764         357789999


Q ss_pred             CCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCC
Q 001310          607 MNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANG  686 (1103)
Q Consensus       607 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~  686 (1103)
                      +.++..............+....|||||+.+|.... +.|.+.+..++...+........                    
T Consensus        98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~~-~nl~~~~~~~~~~~~lt~~g~~~--------------------  156 (465)
T d1xfda1          98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEG--------------------  156 (465)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTT--------------------
T ss_pred             ccCCceeeccCccCCccccceeeeccCCceEEEEec-ceEEEEecCCCceEEEecccCcc--------------------
Confidence            998876554333333344667899999999998774 67888887766544332211100                    


Q ss_pred             ceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecC-ceEEEeecCC
Q 001310          687 SVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASN-GVHLMWRWPR  765 (1103)
Q Consensus       687 ~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~d-g~i~vw~~~~  765 (1103)
                                   .+..|-.|     |-.+.              .-...-.++.|||||++|+....| ..+..+.++.
T Consensus       157 -------------~i~nG~~d-----~vyee--------------e~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~  204 (465)
T d1xfda1         157 -------------VIYNGLSD-----WLYEE--------------EILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPT  204 (465)
T ss_dssp             -------------TEEEEECC-----HHHHH--------------TTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECC
T ss_pred             -------------eeeccccc-----hhhhh--------------hhccccceEEECCCCCeEEEEEecccccceeeccc
Confidence                         00000000     00000              000111345677777777766543 4444444432


Q ss_pred             Ccc-----------ccccccccccCCeeecCCCCCceeeccCCC--CCCCCCeeEEEEecCCCEEEEEcC-----CeEEE
Q 001310          766 NDL-----------TLSTEATTKVPPRLYQPRHGPQFMVNDTTD--SNSQEAVPCFALSKNDAYLFSASG-----GVISL  827 (1103)
Q Consensus       766 ~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~v~~l~~s~d~~~l~~~~d-----g~i~i  827 (1103)
                      ...           ...|.......+.++++.++..........  .....-+..+.|++|+++++...+     ..+.+
T Consensus       205 ~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~  284 (465)
T d1xfda1         205 YTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTL  284 (465)
T ss_dssp             CSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEE
T ss_pred             ccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEE
Confidence            111           112222223345566666554322211110  012234677899999987777642     24888


Q ss_pred             EEcCCceeeEEecCC-CCC----eeEEEEcCCCCCEEE-E--EeCCC--eEEEEEcC------CceeEEEeccCCCCEEE
Q 001310          828 YIVMTFKTILTIMPP-SPT----ATSLAFNPHDNNVIA-I--GMDDS--TILIYNAR------SSEVISKLEGHSKRVTG  891 (1103)
Q Consensus       828 wd~~~~~~~~~~~~~-~~~----i~~l~~s~~d~~~la-s--g~~dg--~v~iwd~~------~~~~~~~l~~h~~~V~~  891 (1103)
                      +|..++++...+... ...    -....|++ ||+.++ .  ...+|  .++..++.      .++.+..+....-.|..
T Consensus       285 ~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~  363 (465)
T d1xfda1         285 CDATTGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTK  363 (465)
T ss_dssp             EETTTCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEE
T ss_pred             EcCCCCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEE
Confidence            999998776554322 121    23467899 665332 2  22222  34444332      23344455544556666


Q ss_pred             E-EEccCCCEEEE-EeCCC--eEEEEE--cCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEEeC----CeEEE
Q 001310          892 L-VFSDALNILVS-SGGDA--QIFVWD--VDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLVHE----THLAI  961 (1103)
Q Consensus       892 l-~~s~dg~~l~s-~s~dg--~I~iwd--~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~~d----~~v~i  961 (1103)
                      + +|.++++.+.. +..++  .-.+|.  +..+....  ++.......   ....++.|||+|++++....    -.+.+
T Consensus       364 i~~~d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~~--~lt~~~~~~---~~~~~~~~S~~~~y~v~~~s~~~~P~~~~  438 (465)
T d1xfda1         364 ILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQ--CLSCDLVEN---CTYFSASFSHSMDFFLLKCEGPGVPMVTV  438 (465)
T ss_dssp             EEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCB--CSSTTSSSS---CCCCEEEECTTSSEEEEECCSSSSCCEEE
T ss_pred             EEEEcCCCCEEEEEEeCCCCCceEEEEEECCCCCcce--eeccccCCC---CCEEEEEECCCCCEEEEEeecCCCCeEEE
Confidence            5 68888877654 43332  223444  44333211  222111111   24678999999999997432    25778


Q ss_pred             EECCCceEEEEe
Q 001310          962 YEAEELTCLKQW  973 (1103)
Q Consensus       962 wd~~~~~~~~~~  973 (1103)
                      ++..+++.+..+
T Consensus       439 ~~~~~~~~~~~L  450 (465)
T d1xfda1         439 HNTTDKKKMFDL  450 (465)
T ss_dssp             EETTTCCEEEEE
T ss_pred             EECCCCCEEEEE
Confidence            888888777664

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.20  E-value=3.3e-09  Score=114.76  Aligned_cols=254  Identities=10%  Similarity=0.110  Sum_probs=149.5

Q ss_pred             CCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCc-eeeEEe-cCCCCCeeEEEEcCCCCCE--EEEEe-CCCeEEEEEcCC
Q 001310          801 SQEAVPCFALSKNDAYLFSASGGVISLYIVMTF-KTILTI-MPPSPTATSLAFNPHDNNV--IAIGM-DDSTILIYNARS  875 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~-~~~~~~-~~~~~~i~~l~~s~~d~~~--lasg~-~dg~v~iwd~~~  875 (1103)
                      ....+..|+++|+++.|.++..+.+..|.+... ...... .........+++++ +++.  ++++. ..++|..+.+..
T Consensus        38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~  116 (365)
T d1jofa_          38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK  116 (365)
T ss_dssp             TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred             CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence            455567899999999999888888888877642 222221 12234566788888 6763  33322 245565554322


Q ss_pred             -cee---------------EEE-eccCCCCEEEEEEccCCCEEEEEeC-CCeEEEEEcCCC-ceeeeeeeecCCCcccCC
Q 001310          876 -SEV---------------ISK-LEGHSKRVTGLVFSDALNILVSSGG-DAQIFVWDVDGW-GIQTCRSLQTPDGVMTLA  936 (1103)
Q Consensus       876 -~~~---------------~~~-l~~h~~~V~~l~~s~dg~~l~s~s~-dg~I~iwd~~~~-~~~~~~~~~~~~~~~~~~  936 (1103)
                       +..               ... -......+.+++|+|||+++++++. ...|.+|+.... .............    .
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~----g  192 (365)
T d1jofa_         117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP----G  192 (365)
T ss_dssp             SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST----T
T ss_pred             CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC----C
Confidence             110               110 1112234789999999998888764 457888876643 3222222222211    1


Q ss_pred             CCceEEEEcCCCCEEEEE--eCCeEEEEECCCceEE--EE---ee--C-----------CCCcCeEEEEEccCCCEEEEE
Q 001310          937 PSETHIQFHKDQTRFLLV--HETHLAIYEAEELTCL--KQ---WF--P-----------ISSVPISQATFSCDCRMVFTS  996 (1103)
Q Consensus       937 ~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~~--~~---~~--~-----------~h~~~v~~l~fs~dg~~l~t~  996 (1103)
                      .....++|+|||+++.+.  .+++|.+|+++.+...  ..   ..  .           .+......+.++|||++|+++
T Consensus       193 ~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvs  272 (365)
T d1jofa_         193 DHPRWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFAS  272 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEE
T ss_pred             CceEEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEE
Confidence            358999999999999875  5688999998765322  11   10  0           112235678999999999877


Q ss_pred             ec-C-----CcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEE-ecCCcEEEE
Q 001310          997 FV-D-----GTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVG-LTNGEVYVI 1069 (1103)
Q Consensus       997 ~~-d-----g~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~-~~dg~v~vw 1069 (1103)
                      .. +     +.|..|++.....+.+.......+               ...-.+..++++|.+|.+|+++ ..++.|.+|
T Consensus       273 nr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---------------~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~  337 (365)
T d1jofa_         273 SRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP---------------TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIY  337 (365)
T ss_dssp             EEESSTTSCCEEEEEEECTTSCEEEEEEEEECS---------------SCCTTCCCEEECTTCTTEEEEECSSSCEEEEE
T ss_pred             cccCCCccceEEEEEEecCCCceeeEeEeeEEE---------------cCCCCccEEEecCCCCCEEEEEeCCCCeEEEE
Confidence            42 2     237777776532222111000000               0112234577888557766555 677899999


Q ss_pred             ccCCC
Q 001310         1070 EPNEP 1074 (1103)
Q Consensus      1070 ~~~~~ 1074 (1103)
                      ++...
T Consensus       338 ~~~~~  342 (365)
T d1jofa_         338 RWKDE  342 (365)
T ss_dssp             EEETT
T ss_pred             EEeCC
Confidence            98433

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=99.11  E-value=2.5e-08  Score=104.75  Aligned_cols=246  Identities=11%  Similarity=0.053  Sum_probs=161.3

Q ss_pred             cCCccceeEecccCCcCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          320 SDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       320 ~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      +.-|.+++.++...+ .+..++++|||+ |+++...+++|..||.......                     +......+
T Consensus        14 ~~~~~~v~~~~p~~~-~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~   70 (302)
T d2p4oa1          14 ELAPAKIITSFPVNT-FLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKV   70 (302)
T ss_dssp             CCCCEEEEEEECTTC-CEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEE
T ss_pred             cCCcccEEEECCCCC-CcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCc
Confidence            334556666666544 688999999998 7889888999988886543221                     22355789


Q ss_pred             EEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE
Q 001310          400 NRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY  479 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~  479 (1103)
                      .+++|++||+++++...++.+.+|+......................+++.++++  ++++.+.++.+..+|..++....
T Consensus        71 ~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~  148 (302)
T d2p4oa1          71 SGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSI  148 (302)
T ss_dssp             EEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEE
T ss_pred             ceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCccee
Confidence            9999999999999988888888888876442222111223445688999999998  78888888889889987775432


Q ss_pred             Eeec--------CC--CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeE--EecCCCccEEEEEEccCCCEEEEE
Q 001310          480 SFEG--------HG--APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARV--DYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       480 ~~~~--------~~--~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~--~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      ....        +.  .....+.+  . ++.++++.+..+.|..++........  ...........++++++|++.++.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~ngi~~--~-~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~  225 (302)
T d2p4oa1         149 WLEHPMLARSNSESVFPAANGLKR--F-GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGAT  225 (302)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEEEE--E-TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEEC
T ss_pred             EecCCccceeeccCcccccccccc--c-CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEE
Confidence            2211        11  22344444  3 33566777788888888876544322  111122334569999999976665


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEE---cCCCCEEEEEeCC
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHF---DTAKDQILAAGDD  599 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~~~d  599 (1103)
                      ..    ++.|..++.. ++......... ......+++|   ++|++.|+.++..
T Consensus       226 ~~----~~~V~~i~p~-G~~~~~~~~~~-~~~~pt~vafg~~~~D~~~Lyvtt~~  274 (302)
T d2p4oa1         226 HI----YNSVVRIAPD-RSTTIIAQAEQ-GVIGSTAVAFGQTEGDCTAIYVVTNG  274 (302)
T ss_dssp             BT----TCCEEEECTT-CCEEEEECGGG-TCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred             cC----CCcEEEECCC-CCEEEEEecCC-CCCCceEEEEcCCCCCCCEEEEECCC
Confidence            43    4458888765 44333333221 1246889999   6778888776543

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.10  E-value=2e-08  Score=103.82  Aligned_cols=223  Identities=9%  Similarity=0.110  Sum_probs=134.0

Q ss_pred             CCCccEEEEEECCCCCEEEEEeCCC---eEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEE
Q 001310          394 DPGVSVNRVVWSPDGSLLGVAYSKH---IVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVW  470 (1103)
Q Consensus       394 ~h~~~V~~~~~spdg~~las~~~d~---~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iw  470 (1103)
                      .+...+.+.+|||||++||......   .+.+.+..++...    .+..+........|+|||+.+ +.....++...++
T Consensus        36 ~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~~~  110 (269)
T d2hqsa1          36 RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLNLY  110 (269)
T ss_dssp             EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCEEE
T ss_pred             cCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCcccee
Confidence            3567788999999999999875443   4666666665422    345677888999999999963 3333334443333


Q ss_pred             eCCCCc-eeEEeecCCCceEEEEeeecCCccEEEEEECCCe--EEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEE
Q 001310          471 DAVTGS-RTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGK--IKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSC  547 (1103)
Q Consensus       471 d~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~--i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~  547 (1103)
                      ...... ................+.+. ....+++...+|.  |...++..... ..............++|+++.++..
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~  188 (269)
T d2hqsa1         111 VMDLASGQIRQVTDGRSNNTEPTWFPD-SQNLAFTSDQAGRPQVYKVNINGGAP-QRITWEGSQNQDADVSSDGKFMVMV  188 (269)
T ss_dssp             EEETTTCCEEECCCCSSCEEEEEECTT-SSEEEEEECTTSSCEEEEEETTSSCC-EECCCSSSEEEEEEECTTSSEEEEE
T ss_pred             ecccccccceeeeeccccccccccccc-cccceecccccCCceEeeeecccccc-eeeecccccccccccccccceeEEE
Confidence            322222 22222222222223333322 2234445555555  44445444332 2334445567788999999999987


Q ss_pred             ecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeC---CCcEEEEECCCCeeEEEEcCCCCCCC
Q 001310          548 GTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGD---DHVIKIWDMNKVQLLTTIDAGGGLPE  624 (1103)
Q Consensus       548 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~  624 (1103)
                      .... +...+.+.+...+... ... ..   .......|+|||+.|+..+.   ...|+++++..+.... +....  ..
T Consensus       189 ~~~~-~~~~i~~~~~~~~~~~-~~~-~~---~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~-lt~~~--g~  259 (269)
T d2hqsa1         189 SSNG-GQQHIAKQDLATGGVQ-VLS-ST---FLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKAR-LPATD--GQ  259 (269)
T ss_dssp             EECS-SCEEEEEEETTTCCEE-ECC-CS---SSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEE-CCCSS--SE
T ss_pred             eecC-CceeeeEeecccccce-Eee-cC---ccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-EeCCC--Cc
Confidence            7543 4566777887766543 222 22   45667889999999987553   3468899998766544 33322  23


Q ss_pred             CceEEEec
Q 001310          625 NPRICFNK  632 (1103)
Q Consensus       625 v~~v~~s~  632 (1103)
                      +...+|||
T Consensus       260 ~~~p~WSP  267 (269)
T d2hqsa1         260 VKFPAWSP  267 (269)
T ss_dssp             EEEEEECC
T ss_pred             EEeEEeCC
Confidence            56778887

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.98  E-value=1.4e-07  Score=97.25  Aligned_cols=236  Identities=14%  Similarity=0.086  Sum_probs=146.0

Q ss_pred             CccceeEecccCCcCceEEEecCCCceEEEEEcCCC--cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccE
Q 001310          322 FPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG--DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSV  399 (1103)
Q Consensus       322 ~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~--~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V  399 (1103)
                      ......+.+..+...+...+|||||++|+.+....+  .+.+.+..++....                    +..+.+..
T Consensus        26 ~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~   85 (269)
T d2hqsa1          26 YDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VASFPRHN   85 (269)
T ss_dssp             TTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EECCSSCE
T ss_pred             CCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eeeeeccc
Confidence            344455566666678899999999997666655444  35555665555432                    34577888


Q ss_pred             EEEEECCCCCEEEEEeC-CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCc--eEEEeCCCCc
Q 001310          400 NRVVWSPDGSLLGVAYS-KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKT--IKVWDAVTGS  476 (1103)
Q Consensus       400 ~~~~~spdg~~las~~~-d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~--i~iwd~~~~~  476 (1103)
                      ....|||||+.++.... ++...++.......  .......+........+++++.. .+++...++.  |.+.++.++.
T Consensus        86 ~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~~~~~~  162 (269)
T d2hqsa1          86 GAPAFSPDGSKLAFALSKTGSLNLYVMDLASG--QIRQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVNINGGA  162 (269)
T ss_dssp             EEEEECTTSSEEEEEECTTSSCEEEEEETTTC--CEEECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEETTSSC
T ss_pred             ccceecCCCCeeeEeeecCCccceeecccccc--cceeeeecccccccccccccccc-ceecccccCCceEeeeeccccc
Confidence            99999999999988754 33333333333221  11122334445566678888875 4555555664  4455555543


Q ss_pred             eeEEeecCCCceEEEEeeecCCccEEEEEEC-CCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310          477 RTYSFEGHGAPVYSLCPHAKENIHFIFSISV-DGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1103)
Q Consensus       477 ~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1103)
                      . ..+..+........+  ++++..++..+. .+...+|..+...................|||||+.|+..+.. .+..
T Consensus       163 ~-~~~~~~~~~~~~~~~--spdg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~~-~~~~  238 (269)
T d2hqsa1         163 P-QRITWEGSQNQDADV--SSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSSQ-GMGS  238 (269)
T ss_dssp             C-EECCCSSSEEEEEEE--CTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEEE-TTEE
T ss_pred             c-eeeeccccccccccc--ccccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEcC-CCCc
Confidence            3 333344454555556  446666666544 4555555555444444555555566788999999999876643 3467


Q ss_pred             eEEEEeCCCCeeEEEEecccccCCceEEEEEcC
Q 001310          556 FLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDT  588 (1103)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~  588 (1103)
                      .|+++++..+... .+....   +.+...+|+|
T Consensus       239 ~l~~~~~dg~~~~-~lt~~~---g~~~~p~WSP  267 (269)
T d2hqsa1         239 VLNLVSTDGRFKA-RLPATD---GQVKFPAWSP  267 (269)
T ss_dssp             EEEEEETTSCCEE-ECCCSS---SEEEEEEECC
T ss_pred             EEEEEECCCCCEE-EEeCCC---CcEEeEEeCC
Confidence            7999999877654 344434   5778888988

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.98  E-value=1.7e-07  Score=95.71  Aligned_cols=238  Identities=10%  Similarity=0.042  Sum_probs=154.7

Q ss_pred             CCCCeeEEEEecCCCEEEEEc--CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee
Q 001310          801 SQEAVPCFALSKNDAYLFSAS--GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV  878 (1103)
Q Consensus       801 ~~~~v~~l~~s~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~  878 (1103)
                      +......++++++|...++..  .+.+..++...................+++++ +++++++....+.+++++-.++..
T Consensus        12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~   90 (260)
T d1rwia_          12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT   90 (260)
T ss_dssp             SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred             CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence            445678999999999777654  46676666553332222222234567899999 788888777777777766555554


Q ss_pred             EEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE-eCC
Q 001310          879 ISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV-HET  957 (1103)
Q Consensus       879 ~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~-~d~  957 (1103)
                      +....+ .....++++.++++++++-.....+..++........    ....+.    .....++++++|+++++. .++
T Consensus        91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~----~~~~~~----~~p~~i~~~~~g~~~v~~~~~~  161 (260)
T d1rwia_          91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV----LPFTGL----NDPDGVAVDNSGNVYVTDTDNN  161 (260)
T ss_dssp             ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEE----CCCCSC----CSCCEEEECTTCCEEEEEGGGT
T ss_pred             eeeeee-eeecccccccccceeEeeccccccccccccccceeee----eeeccc----CCcceeeecCCCCEeeeccccc
Confidence            433332 3457899999999988877677777777776533111    111111    146789999999987774 677


Q ss_pred             eEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeeccccccCCCCCCCceeeEeec
Q 001310          958 HLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYC 1037 (1103)
Q Consensus       958 ~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1037 (1103)
                      .|..++.+...... +..........+++.++|.++++....+.|..++..+.... .+..                   
T Consensus       162 ~i~~~d~~~~~~~~-~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~-~~~~-------------------  220 (260)
T d1rwia_         162 RVVKLEAESNNQVV-LPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTST-VLPF-------------------  220 (260)
T ss_dssp             EEEEECTTTCCEEE-CCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCE-ECCC-------------------
T ss_pred             cccccccccceeee-eeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEE-EEcc-------------------
Confidence            89999987554433 23344556789999999998888777888888876554321 1110                   


Q ss_pred             cCCceeeEEEEECCCCCcEEEEEecCCcEEEEcc
Q 001310         1038 SCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEP 1071 (1103)
Q Consensus      1038 ~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~ 1071 (1103)
                       ..--.+..++++++ ++++++-..+++|...+.
T Consensus       221 -~~~~~P~~i~~d~~-g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         221 -TGLNTPLAVAVDSD-RTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             -CSCCCEEEEEECTT-CCEEEEEGGGTEEEEECC
T ss_pred             -CCCCCeEEEEEeCC-CCEEEEECCCCEEEEEeC
Confidence             00123567888988 788887777776665554

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.92  E-value=1.1e-07  Score=97.14  Aligned_cols=239  Identities=9%  Similarity=-0.028  Sum_probs=148.5

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      -....|+++++|..+++..+..+.+..++..+...... .                 .. -......++++++|+++++.
T Consensus        14 ~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-~-----------------~~-~~~~p~gvav~~~g~i~v~d   74 (260)
T d1rwia_          14 LSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-P-----------------FN-GLYQPQGLAVDGAGTVYVTD   74 (260)
T ss_dssp             CCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-C-----------------CC-SCCSCCCEEECTTCCEEEEE
T ss_pred             CCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-c-----------------cC-CccCceEEEEcCCCCEEEee
Confidence            35689999999985555555667777776654432211 0                 11 12345678999999988777


Q ss_pred             eCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEee
Q 001310          415 YSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPH  494 (1103)
Q Consensus       415 ~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~  494 (1103)
                      ...+.+++++-.++..+.   .. .......++++.++++  ++++-.....+..++...................+++.
T Consensus        75 ~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~  148 (260)
T d1rwia_          75 FNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD  148 (260)
T ss_dssp             TTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEEC
T ss_pred             eeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceeeec
Confidence            666667666554443222   11 2234578999999998  66666666667777755443322212223445677774


Q ss_pred             ecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecc
Q 001310          495 AKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGL  574 (1103)
Q Consensus       495 ~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~  574 (1103)
                      +  ++.++++...++.|..++.+.................+++.++|+++++...    .+.|..++...... ..+...
T Consensus       149 ~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~~~  221 (260)
T d1rwia_         149 N--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLPFT  221 (260)
T ss_dssp             T--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECCCC
T ss_pred             C--CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEccC
Confidence            4  6678888888889999987765544433344456788999999988777643    45577787654432 222211


Q ss_pred             cccCCceEEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001310          575 QLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDM  607 (1103)
Q Consensus       575 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~  607 (1103)
                      .  -.....++++++++.+++-..++.|+.++.
T Consensus       222 ~--~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         222 G--LNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             S--CCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             C--CCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence            1  245788999999887777666676665553

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.90  E-value=1.6e-07  Score=98.47  Aligned_cols=203  Identities=10%  Similarity=0.063  Sum_probs=135.3

Q ss_pred             CCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCcee-EE
Q 001310          803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEV-IS  880 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~-~~  880 (1103)
                      ..+..++++|||+++++.. +++|..|+... + ...+......+.+++|++ +++++++...++.+..|+...... ..
T Consensus        28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~-~~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~  104 (302)
T d2p4oa1          28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-N-QQIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE  104 (302)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTTC-C-EEEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred             CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-C-EEEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence            4678999999999998876 68888887653 3 333444567899999999 888999988888888888764321 12


Q ss_pred             Ee--ccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCC--CcccCCCCceEEEEcCCCCEEEE--E
Q 001310          881 KL--EGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPD--GVMTLAPSETHIQFHKDQTRFLL--V  954 (1103)
Q Consensus       881 ~l--~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~--~~~~~~~~v~~l~fs~dg~~l~~--~  954 (1103)
                      .+  .........+++.++|+++++.+.++.+..++...+.......-....  ...........+.++  +..+..  .
T Consensus       105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~  182 (302)
T d2p4oa1         105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT  182 (302)
T ss_dssp             EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred             eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence            22  124456889999999999999888999999988876533211111000  001101133455554  445554  3


Q ss_pred             eCCeEEEEECCCceEEEEe-eCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCc
Q 001310          955 HETHLAIYEAEELTCLKQW-FPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNL 1010 (1103)
Q Consensus       955 ~d~~v~iwd~~~~~~~~~~-~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~ 1010 (1103)
                      ..+.|+.++.......... ...+......++|++||+++++...++.|..++.+..
T Consensus       183 ~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G~  239 (302)
T d2p4oa1         183 EKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDRS  239 (302)
T ss_dssp             TTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBTTCCEEEECTTCC
T ss_pred             CCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcCCCcEEEECCCCC
Confidence            6778888887654322110 0012345678999999998888778899999987654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.89  E-value=5.3e-07  Score=94.45  Aligned_cols=246  Identities=14%  Similarity=0.096  Sum_probs=153.8

Q ss_pred             CceEEEecCCCceEEEEEcC-------CCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          336 SPMSMDFHPVQHTLLLVGTN-------VGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~-------d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      ....++|.|||+ +.++...       +++|..||..++.......               .....-.+....++|.++|
T Consensus        19 g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~---------------~~~~~~~g~P~Gl~~~~dg   82 (314)
T d1pjxa_          19 GAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGCQCDRDA   82 (314)
T ss_dssp             TCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEEEECSSS
T ss_pred             CCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEEC---------------CccccCCCcceeEEEeCCC
Confidence            567789999998 4444322       3678899988876543200               0011112346789999999


Q ss_pred             CEEEEEeCCCeEEEEEecCCCccccceEecccc-ccEEEEEEecCCCceEEEEEcC---------------CCceEEEeC
Q 001310          409 SLLGVAYSKHIVQLYAYHGGSDARQQLEIDAHV-GNVNDLAFSAPCKQISVITCGD---------------DKTIKVWDA  472 (1103)
Q Consensus       409 ~~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~-~~v~~~~~s~d~~~~~l~s~~~---------------d~~i~iwd~  472 (1103)
                      ..|+++...+.|...+..++..........+.. ...+.+++.++|.  +.++-..               +|.|..++.
T Consensus        83 ~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~  160 (314)
T d1pjxa_          83 NQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFTT  160 (314)
T ss_dssp             SEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEECT
T ss_pred             CEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEee
Confidence            988888777778888887653221110111111 1357899999998  5555321               233444442


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCc---cEEEEEECCCeEEEEEcCCCCeeE------EecCC-CccEEEEEEccCCC
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENI---HFIFSISVDGKIKAWLYDSLGARV------DYDAP-GLGCTRMAYSANGR  542 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~~~dg~i~iwd~~~~~~~~------~~~~~-~~~i~~~~~s~dg~  542 (1103)
                       .|+..... ..-...+.++|++..++   .+.++-+..+.|..|++.......      .+... ......+++..+|+
T Consensus       161 -dg~~~~~~-~~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn  238 (314)
T d1pjxa_         161 -DGQMIQVD-TAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN  238 (314)
T ss_dssp             -TSCEEEEE-EEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred             -cCceeEee-CCcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence             34433322 22334467888776543   244555678889988876544322      11111 22456899999999


Q ss_pred             EEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEE-EEEeCCCcEEEEECC
Q 001310          543 RLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQI-LAAGDDHVIKIWDMN  608 (1103)
Q Consensus       543 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~  608 (1103)
                      ..++...    .+.|.+||...++.+..+....   ....+++|.|+++.| ++.+.+|.|...++.
T Consensus       239 lyVa~~~----~g~I~~~dp~~g~~~~~i~~p~---~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         239 LLVANWG----SSHIEVFGPDGGQPKMRIRCPF---EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             EEEEEET----TTEEEEECTTCBSCSEEEECSS---SCEEEEEECTTSSEEEEEETTTTEEEEEECS
T ss_pred             EEEEEcC----CCEEEEEeCCCCEEEEEEECCC---CCEEEEEEeCCCCEEEEEECCCCcEEEEECC
Confidence            8776543    4569999998887777666544   578899999998765 445677888887765

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.89  E-value=9e-07  Score=91.20  Aligned_cols=244  Identities=12%  Similarity=0.111  Sum_probs=163.5

Q ss_pred             cEEEEEECCCCCEEEEEeCCCeEEEEEecCCCccccceEe---ccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCC
Q 001310          398 SVNRVVWSPDGSLLGVAYSKHIVQLYAYHGGSDARQQLEI---DAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVT  474 (1103)
Q Consensus       398 ~V~~~~~spdg~~las~~~d~~i~iwd~~~~~~~~~~~~l---~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~  474 (1103)
                      ....++++++|+.+++-..++.|++||.+ |+.+......   .+....-..+++.++....+++..+.++.|.+++ ..
T Consensus        24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~  101 (279)
T d1q7fa_          24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QY  101 (279)
T ss_dssp             CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC-TT
T ss_pred             CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccc-cc
Confidence            46889999999988887778899999965 3333211111   1122234566766665543444555667888888 46


Q ss_pred             CceeEEeec-CCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe--cCCCccEEEEEEccCCCEEEEEecCC
Q 001310          475 GSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY--DAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       475 ~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~--~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      ++....+.. .......+++.  +++.++++....+.+.+++.+. +....+  ..+......+++.++++.+++...  
T Consensus       102 g~~~~~~~~~~~~~p~~~avd--~~G~i~v~~~~~~~~~~~~~~g-~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~--  176 (279)
T d1q7fa_         102 GQFVRKFGATILQHPRGVTVD--NKGRIIVVECKVMRVIIFDQNG-NVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR--  176 (279)
T ss_dssp             SCEEEEECTTTCSCEEEEEEC--TTSCEEEEETTTTEEEEECTTS-CEEEEEECTTTCSSEEEEEECSSSEEEEEEGG--
T ss_pred             ccceeecCCCcccccceeccc--cCCcEEEEeeccceeeEeccCC-ceeecccccccccccceeeeccceeEEeeecc--
Confidence            776666632 34556677764  4667777777777788887543 333333  334456788999999987776654  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                        .+.|++||. +|+.+..+.. .........+++.++|+.+++-. .++.|.+|+. +|+.+..+...........+++
T Consensus       177 --~~~V~~~d~-~G~~~~~~g~-~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav  251 (279)
T d1q7fa_         177 --AHCVKVFNY-EGQYLRQIGG-EGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL  251 (279)
T ss_dssp             --GTEEEEEET-TCCEEEEESC-TTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred             --ccceeeeec-CCceeeeecc-cccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEE
Confidence              557999996 4666666642 21235678999999998777644 3457999984 6787777754443345678999


Q ss_pred             ecCCCEEEEEECCCeEEEEEcCCC
Q 001310          631 NKNGTLLAVIANENRIKILETPES  654 (1103)
Q Consensus       631 s~~g~~l~~~~~dg~i~iw~~~~~  654 (1103)
                      .|+|.+ +++..++.|++|.....
T Consensus       252 ~~dG~l-~V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         252 MDDGSV-VLASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ETTTEE-EEEETTTEEEEEECSCC
T ss_pred             eCCCcE-EEEeCCCeEEEEEeeee
Confidence            999965 55667899999998754

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.89  E-value=3.4e-07  Score=95.93  Aligned_cols=241  Identities=13%  Similarity=0.135  Sum_probs=154.1

Q ss_pred             CeeEEEEecCCCEEEEEc--------CCeEEEEEcCCceeeEEecCC----CCCeeEEEEcCCCCCEEEEEeCCCeEEEE
Q 001310          804 AVPCFALSKNDAYLFSAS--------GGVISLYIVMTFKTILTIMPP----SPTATSLAFNPHDNNVIAIGMDDSTILIY  871 (1103)
Q Consensus       804 ~v~~l~~s~d~~~l~~~~--------dg~i~iwd~~~~~~~~~~~~~----~~~i~~l~~s~~d~~~lasg~~dg~v~iw  871 (1103)
                      ....++|.++|+++++..        +++|..||..++.........    ......++|++ ++..|++++..+.|...
T Consensus        19 g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~   97 (314)
T d1pjxa_          19 GAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVV   97 (314)
T ss_dssp             TCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEE
T ss_pred             CCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEE
Confidence            456789999999888753        356888888877654433221    22457899999 78777778777788888


Q ss_pred             EcCCceeEEEeccCC----CCEEEEEEccCCCEEEEEeC---------------CCeEEEEEcCCCceeeeeeeecCCCc
Q 001310          872 NARSSEVISKLEGHS----KRVTGLVFSDALNILVSSGG---------------DAQIFVWDVDGWGIQTCRSLQTPDGV  932 (1103)
Q Consensus       872 d~~~~~~~~~l~~h~----~~V~~l~~s~dg~~l~s~s~---------------dg~I~iwd~~~~~~~~~~~~~~~~~~  932 (1103)
                      +...+..........    ...+.+++.++|++.++-..               +|.|..++.+. +...  ......  
T Consensus        98 ~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~--~~~~~~--  172 (314)
T d1pjxa_          98 QTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQ--VDTAFQ--  172 (314)
T ss_dssp             ETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEE--EEEEES--
T ss_pred             eCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeE--eeCCcc--
Confidence            877554222111111    13577999999999887432               23444444432 2211  111111  


Q ss_pred             ccCCCCceEEEEcCCCC----EEEEE--eCCeEEEEECCCceEEE------EeeCCCCcCeEEEEEccCCCEEEEEecCC
Q 001310          933 MTLAPSETHIQFHKDQT----RFLLV--HETHLAIYEAEELTCLK------QWFPISSVPISQATFSCDCRMVFTSFVDG 1000 (1103)
Q Consensus       933 ~~~~~~v~~l~fs~dg~----~l~~~--~d~~v~iwd~~~~~~~~------~~~~~h~~~v~~l~fs~dg~~l~t~~~dg 1000 (1103)
                           ....++|+|++.    .|.++  ..+.|+.||+.....+.      .+...+......+++..+|+..++....+
T Consensus       173 -----~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g  247 (314)
T d1pjxa_         173 -----FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSS  247 (314)
T ss_dssp             -----SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTT
T ss_pred             -----eeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCC
Confidence                 246799999875    45554  56789888875332221      11112233467899999999888777789


Q ss_pred             cEEEEeCCCceeEEeeccccccCCCCCCCceeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCCCC
Q 001310         1001 TLSIHEASNLEVQCRILSTAYLRPTTSHDKILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEPGD 1076 (1103)
Q Consensus      1001 ~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~~~ 1076 (1103)
                      .|.+||.++++....+...                   .  -.+..++|.|+...++++.+.+|.|...++...+.
T Consensus       248 ~I~~~dp~~g~~~~~i~~p-------------------~--~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~G~  302 (314)
T d1pjxa_         248 HIEVFGPDGGQPKMRIRCP-------------------F--EKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRNGK  302 (314)
T ss_dssp             EEEEECTTCBSCSEEEECS-------------------S--SCEEEEEECTTSSEEEEEETTTTEEEEEECSSCBC
T ss_pred             EEEEEeCCCCEEEEEEECC-------------------C--CCEEEEEEeCCCCEEEEEECCCCcEEEEECCCCCh
Confidence            9999999988876655511                   1  12346788887434677777888888888755554

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.88  E-value=2.2e-06  Score=88.19  Aligned_cols=240  Identities=10%  Similarity=0.083  Sum_probs=161.7

Q ss_pred             CCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCC------CCCeeEEEEcCCCCCEEEEE-eCCCeEEEEEcC
Q 001310          803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPP------SPTATSLAFNPHDNNVIAIG-MDDSTILIYNAR  874 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~------~~~i~~l~~s~~d~~~lasg-~~dg~v~iwd~~  874 (1103)
                      .....++++++|+.+++-. ++.|++||.+ ++.+..+...      ......+++.++.+.++++. +.++.|..++. 
T Consensus        23 ~~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~-  100 (279)
T d1q7fa_          23 TEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQ-  100 (279)
T ss_dssp             SCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECT-
T ss_pred             CCccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccc-
Confidence            3568999999999877754 5889999965 6666666321      11345566665345455443 44567777775 


Q ss_pred             CceeEEEec-cCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE
Q 001310          875 SSEVISKLE-GHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1103)
Q Consensus       875 ~~~~~~~l~-~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  953 (1103)
                      .++....+. ........+++.++|.++++....+.+.+++.+... ..  .+.... +.   .....+++.++|+.+++
T Consensus       101 ~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~~-~~--~~g~~~-~~---~~~~~i~~d~~g~i~v~  173 (279)
T d1q7fa_         101 YGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNV-LH--KFGCSK-HL---EFPNGVVVNDKQEIFIS  173 (279)
T ss_dssp             TSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCE-EE--EEECTT-TC---SSEEEEEECSSSEEEEE
T ss_pred             cccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCce-ee--cccccc-cc---cccceeeeccceeEEee
Confidence            466666654 345667899999999998888888888888876522 11  111111 11   25788999999988777


Q ss_pred             E-eCCeEEEEECCCceEEEEee-CCCCcCeEEEEEccCCCEEEEEec-CCcEEEEeCCCceeEEeeccccccCCCCCCCc
Q 001310          954 V-HETHLAIYEAEELTCLKQWF-PISSVPISQATFSCDCRMVFTSFV-DGTLSIHEASNLEVQCRILSTAYLRPTTSHDK 1030 (1103)
Q Consensus       954 ~-~d~~v~iwd~~~~~~~~~~~-~~h~~~v~~l~fs~dg~~l~t~~~-dg~v~vWd~~~~~~~~~~~~~~~~~~~~~~~~ 1030 (1103)
                      . ..+.|++||.. |+.+.++- .++......|++.++|+.+++-.. ++.|.+|+ .+|+.+..+....          
T Consensus       174 d~~~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~----------  241 (279)
T d1q7fa_         174 DNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFT-QDGQLISALESKV----------  241 (279)
T ss_dssp             EGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEEC-TTSCEEEEEEESS----------
T ss_pred             eccccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEEC-CCCCEEEEEeCCC----------
Confidence            5 67899999975 66666542 234556789999999997776543 45799998 4677776665111          


Q ss_pred             eeeEeeccCCceeeEEEEECCCCCcEEEEEecCCcEEEEccCCC
Q 001310         1031 ILCFCYCSCLHVYPHAIAAHPLKPTQFAVGLTNGEVYVIEPNEP 1074 (1103)
Q Consensus      1031 ~~~~~~~~~~~v~~~~~~~~p~~~~~l~~~~~dg~v~vw~~~~~ 1074 (1103)
                               ..-++..++..|+ +.++ +++.++.|++|+...-
T Consensus       242 ---------~~~~p~~vav~~d-G~l~-V~~~n~~v~~fr~~~~  274 (279)
T d1q7fa_         242 ---------KHAQCFDVALMDD-GSVV-LASKDYRLYIYRYVQL  274 (279)
T ss_dssp             ---------CCSCEEEEEEETT-TEEE-EEETTTEEEEEECSCC
T ss_pred             ---------CCCCEeEEEEeCC-CcEE-EEeCCCeEEEEEeeee
Confidence                     1123456777887 6654 4568899999997543

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=6.8e-07  Score=99.25  Aligned_cols=228  Identities=9%  Similarity=0.067  Sum_probs=138.8

Q ss_pred             EecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC----
Q 001310          341 DFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS----  416 (1103)
Q Consensus       341 ~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~----  416 (1103)
                      .|.+++.+ +. -..+|.|.+||+.+++......     .           ..-....+....|||||++++....    
T Consensus        23 ~W~~~~~~-~~-~~~~g~i~~~~~~~~~~~~l~~-----~-----------~~~~~~~~~~~~~SpD~~~vl~~~~~~~~   84 (465)
T d1xfda1          23 KWISDTEF-IY-REQKGTVRLWNVETNTSTVLIE-----G-----------KKIESLRAIRYEISPDREYALFSYNVEPI   84 (465)
T ss_dssp             CBSSSSCB-CC-CCSSSCEEEBCGGGCCCEEEEC-----T-----------TTTTTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred             EEeCCCcE-EE-EeCCCcEEEEECCCCCEEEEEc-----C-----------ccccccccceeEECCCCCeEEEEEcccce
Confidence            57888873 43 3457899999999886532100     0           0112235677899999999988743    


Q ss_pred             -----CCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEee-cCCCce--
Q 001310          417 -----KHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFE-GHGAPV--  488 (1103)
Q Consensus       417 -----d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~v--  488 (1103)
                           .+.+.++|+.++.... +.........+....|||||+.  +|-.. ++.|.+.+..++..++... +..+.|  
T Consensus        85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n  160 (465)
T d1xfda1          85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN  160 (465)
T ss_dssp             SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred             eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence                 4678999999876422 1122233445677899999996  43333 6678888887776655442 222222  


Q ss_pred             ---------------EEEEeeecCCccEEEEEECC-C---------------------------------eEEEEEcCCC
Q 001310          489 ---------------YSLCPHAKENIHFIFSISVD-G---------------------------------KIKAWLYDSL  519 (1103)
Q Consensus       489 ---------------~~~~~~~~~~~~~l~s~~~d-g---------------------------------~i~iwd~~~~  519 (1103)
                                     .++.|  ++||..|+....| .                                 .+.++|++.+
T Consensus       161 G~~d~vyeee~~~~~~a~~W--SPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~  238 (465)
T d1xfda1         161 GLSDWLYEEEILKTHIAHWW--SPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGP  238 (465)
T ss_dssp             EECCHHHHHTTSSSSEEEEE--CTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSS
T ss_pred             cccchhhhhhhccccceEEE--CCCCCeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCC
Confidence                           23334  6688888876432 1                                 2344455444


Q ss_pred             CeeEEecC------CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCce----EEEEEcCC
Q 001310          520 GARVDYDA------PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSV----SVVHFDTA  589 (1103)
Q Consensus       520 ~~~~~~~~------~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v----~~~~~~~~  589 (1103)
                      ........      ...-+..+.|+++++.++...........+.++|..+|+....+....  ...|    ....|+++
T Consensus       239 ~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~--~~wv~~~~~~p~~~~d  316 (465)
T d1xfda1         239 THDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDES--EAWLHRQNEEPVFSKD  316 (465)
T ss_dssp             CCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEEC--SSCCCCCCCCCEECTT
T ss_pred             cEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcC--CceEeccCCceeEccC
Confidence            33222111      112367789999998776655434445578899999998776655432  1222    23568899


Q ss_pred             CCEEE
Q 001310          590 KDQIL  594 (1103)
Q Consensus       590 ~~~l~  594 (1103)
                      |+.++
T Consensus       317 g~~~~  321 (465)
T d1xfda1         317 GRKFF  321 (465)
T ss_dssp             SCSEE
T ss_pred             CCeeE
Confidence            88643

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.72  E-value=1.4e-05  Score=83.64  Aligned_cols=205  Identities=9%  Similarity=0.083  Sum_probs=135.4

Q ss_pred             CCeeEEEEecCCCEEEEEc-CCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeC----CCeEEEEEcCCce
Q 001310          803 EAVPCFALSKNDAYLFSAS-GGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMD----DSTILIYNARSSE  877 (1103)
Q Consensus       803 ~~v~~l~~s~d~~~l~~~~-dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~----dg~v~iwd~~~~~  877 (1103)
                      .....++|.++|++.++-. .++|..|+..+++....+.........+++++ +|+++++...    .+.+...+..++.
T Consensus        40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~  118 (319)
T d2dg1a1          40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN  118 (319)
T ss_dssp             CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred             cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence            3456899999999666654 68899999887766666655666788999999 8887776543    2345555555554


Q ss_pred             eEEEecc--CCCCEEEEEEccCCCEEEEEeC------CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCC
Q 001310          878 VISKLEG--HSKRVTGLVFSDALNILVSSGG------DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQT  949 (1103)
Q Consensus       878 ~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~------dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~  949 (1103)
                      .......  -......+++.++|++.++...      .+.+..++.+.+....  ......       ....++|+||++
T Consensus       119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~--~~~~~~-------~pnGia~s~dg~  189 (319)
T d2dg1a1         119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP--IIQNIS-------VANGIALSTDEK  189 (319)
T ss_dssp             CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE--EEEEES-------SEEEEEECTTSS
T ss_pred             eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE--Eeeccc-------eeeeeeeccccc
Confidence            4333322  1235778999999998776432      1235555554433221  111111       356799999999


Q ss_pred             EEEEE--eCCeEEEEECCCc-e---EEEE---eeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeecc
Q 001310          950 RFLLV--HETHLAIYEAEEL-T---CLKQ---WFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRILS 1018 (1103)
Q Consensus       950 ~l~~~--~d~~v~iwd~~~~-~---~~~~---~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~~ 1018 (1103)
                      .|.++  ..+.|+.|+++.. .   ....   ...........+++.++|++.++....+.|.+||- .|+.+.++..
T Consensus       190 ~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~  266 (319)
T d2dg1a1         190 VLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILI  266 (319)
T ss_dssp             EEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEEC
T ss_pred             eEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeC
Confidence            77664  5789999997532 1   1111   01111234578999999998888888999999995 7888887763

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.59  E-value=2.6e-05  Score=81.54  Aligned_cols=233  Identities=8%  Similarity=-0.008  Sum_probs=145.4

Q ss_pred             cCceEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEE
Q 001310          335 SSPMSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVA  414 (1103)
Q Consensus       335 ~~V~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~  414 (1103)
                      ..+..++|.++|+ |.++-...+.|.-||.++++....                   ..........++|++||+++++.
T Consensus        40 ~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~~-------------------~~~~~~~p~gla~~~dG~l~va~   99 (319)
T d2dg1a1          40 LQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKRP-------------------FVSHKANPAAIKIHKDGRLFVCY   99 (319)
T ss_dssp             CCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEEE-------------------EECSSSSEEEEEECTTSCEEEEE
T ss_pred             cCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEEE-------------------EeCCCCCeeEEEECCCCCEEEEe
Confidence            3457899999998 777777889999999887654432                   22345578899999999988876


Q ss_pred             eCC----CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC------CCceEEEeCCCCceeEEeecC
Q 001310          415 YSK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFEGH  484 (1103)
Q Consensus       415 ~~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~~~  484 (1103)
                      ..+    +.+...+..++.... ...-..-......+++.++|+  +.++...      .+.+..++... +.+..+...
T Consensus       100 ~~~~~~~~~i~~~~~~~~~~~~-~~~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~~  175 (319)
T d2dg1a1         100 LGDFKSTGGIFAATENGDNLQD-IIEDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQN  175 (319)
T ss_dssp             CTTSSSCCEEEEECTTSCSCEE-EECSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTS-CCEEEEEEE
T ss_pred             cCCCccceeEEEEcCCCceeee-eccCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEeccc-ceeEEEeec
Confidence            432    234444444433211 100011123578899999998  5555322      12355555433 333333333


Q ss_pred             CCceEEEEeeecCCccE-EEEEECCCeEEEEEcCCCCeeE--------EecCCCccEEEEEEccCCCEEEEEecCCCCce
Q 001310          485 GAPVYSLCPHAKENIHF-IFSISVDGKIKAWLYDSLGARV--------DYDAPGLGCTRMAYSANGRRLFSCGTSKEGES  555 (1103)
Q Consensus       485 ~~~v~~~~~~~~~~~~~-l~s~~~dg~i~iwd~~~~~~~~--------~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~  555 (1103)
                      -...+.++|++  ++.. .++-+..+.|..|+++......        ...........+++..+|++.++...    .+
T Consensus       176 ~~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~----~g  249 (319)
T d2dg1a1         176 ISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYG----QG  249 (319)
T ss_dssp             ESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEET----TT
T ss_pred             cceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcC----CC
Confidence            33456788854  5554 4566678899999987543211        11112224568999999997777653    56


Q ss_pred             eEEEEeCCCCeeEEEEeccc---ccCCceEEEEEcCCCCEEEEEeC
Q 001310          556 FLVEWNESEGAIKRTYQGLQ---LQHNSVSVVHFDTAKDQILAAGD  598 (1103)
Q Consensus       556 ~i~iwd~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~  598 (1103)
                      .|.++|. .|+.+..+....   .+...+.+++|.++...+++...
T Consensus       250 ~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~  294 (319)
T d2dg1a1         250 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN  294 (319)
T ss_dssp             EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred             EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence            7999995 688888776432   11235789999998887777553

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.55  E-value=4.6e-06  Score=85.96  Aligned_cols=237  Identities=11%  Similarity=0.029  Sum_probs=128.2

Q ss_pred             EEecCC--CceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeC-
Q 001310          340 MDFHPV--QHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYS-  416 (1103)
Q Consensus       340 v~~spd--g~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~-  416 (1103)
                      ...|||  |++++.+..  +.|.+.|+.+++...                    +..+.+.+...+|||||++||.... 
T Consensus         4 ~~~sPdi~G~~v~f~~~--~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~   61 (281)
T d1k32a2           4 LLLNPDIHGDRIIFVCC--DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMR   61 (281)
T ss_dssp             CCEEEEEETTEEEEEET--TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEE
T ss_pred             cccCCCCCCCEEEEEeC--CcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEee
Confidence            356899  997666643  668888999887543                    5557788899999999999997642 


Q ss_pred             C-----CeEEEEEecCCCccccce---EeccccccEEEEEEecCCCceEEEEEcC------CCceEEEeCCCCceeEEee
Q 001310          417 K-----HIVQLYAYHGGSDARQQL---EIDAHVGNVNDLAFSAPCKQISVITCGD------DKTIKVWDAVTGSRTYSFE  482 (1103)
Q Consensus       417 d-----~~i~iwd~~~~~~~~~~~---~l~~h~~~v~~~~~s~d~~~~~l~s~~~------d~~i~iwd~~~~~~~~~~~  482 (1103)
                      +     ..|.+++..+++..+...   ............+|+|||+  .++....      ...+...+...+...... 
T Consensus        62 ~~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  138 (281)
T d1k32a2          62 GSSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVENDGINFVPLN-  138 (281)
T ss_dssp             STTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGGGTEEEECC-
T ss_pred             CCCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCC--EEEEEEccCCCccceeeeeecCCCceeEEec-
Confidence            1     247777777765432110   0112223456789999999  4444322      122445555444433221 


Q ss_pred             cCCCceEEEEeeecCCccEEEEEECCC-----------eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          483 GHGAPVYSLCPHAKENIHFIFSISVDG-----------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       483 ~~~~~v~~~~~~~~~~~~~l~s~~~dg-----------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                        ........+  ..++..++....+.           .......... ................++++  .++... +.
T Consensus       139 --~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~  210 (281)
T d1k32a2         139 --LGPATHILF--ADGRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSG-AFKKIVDMSTHVSSPVIVGH--RIYFIT-DI  210 (281)
T ss_dssp             --SCSCSEEEE--ETTEEEEEESCSCCTTSTTCCSTTCCEEEEEEETT-EEEEEECCSSCCEEEEEETT--EEEEEE-CT
T ss_pred             --CCccceeee--cCCCeEEEeeccccceeeeeccCCcceeeeecccc-ceeeccCCccccceeeeecc--ccceec-cc
Confidence              111111111  11222222221111           1111111111 11122222233334445554  333333 23


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~  615 (1103)
                      .+...|+++|+.+++..+......   ..+  ..|+|||+.|+... ++.|+++|+.+++....
T Consensus       211 ~~~~~l~~~d~~g~~~~~lt~~~~---~~~--~~~SpDG~~I~f~~-~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         211 DGFGQIYSTDLDGKDLRKHTSFTD---YYP--RHLNTDGRRILFSK-GGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             TSSCEEEEEETTSCSCEECCCCCS---SCE--EEEEESSSCEEEEE-TTEEEEECTTTCCEEEC
T ss_pred             ccccceEEEeCCCCceEEeecCCC---ccc--ccCcCCCCEEEEEe-CCEEEEEECCCCCEEEe
Confidence            446679999998776544322222   233  45899999987744 68899999988876543

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.35  E-value=0.00024  Score=72.77  Aligned_cols=216  Identities=9%  Similarity=0.019  Sum_probs=143.0

Q ss_pred             EEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe
Q 001310          446 DLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1103)
Q Consensus       446 ~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  525 (1103)
                      ...|.+.... +..+--..+.|..||..+++.. .+. ....+.++++.  .++.++++ +.+ .+.++|..+++.....
T Consensus        22 gp~wd~~~~~-l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~--~dg~l~va-~~~-gl~~~d~~tg~~~~l~   94 (295)
T d2ghsa1          22 GPTFDPASGT-AWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKI--SDSKQLIA-SDD-GLFLRDTATGVLTLHA   94 (295)
T ss_dssp             EEEEETTTTE-EEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEE--ETTEEEEE-ETT-EEEEEETTTCCEEEEE
T ss_pred             CCeEECCCCE-EEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEe--cCCCEEEE-EeC-ccEEeecccceeeEEe
Confidence            4567775553 3444446778999998888653 232 34567777764  35555554 444 5788998887765443


Q ss_pred             cC----CCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEE-EeCCC
Q 001310          526 DA----PGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILA-AGDDH  600 (1103)
Q Consensus       526 ~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg  600 (1103)
                      ..    ....+..+.+.|+|++.++..........-.+|....++........    ...+.++|+++++.++. -+..+
T Consensus        95 ~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~----~~~Ng~~~s~d~~~l~~~dt~~~  170 (295)
T d2ghsa1          95 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADI----SIPNSICFSPDGTTGYFVDTKVN  170 (295)
T ss_dssp             CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEE----SSEEEEEECTTSCEEEEEETTTC
T ss_pred             eeecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeecc----CCcceeeecCCCceEEEeecccc
Confidence            32    22367889999999987765543322333455666667665555443    35678999999987665 45678


Q ss_pred             cEEEEECCCC------eeEEEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEe
Q 001310          601 VIKIWDMNKV------QLLTTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVN  673 (1103)
Q Consensus       601 ~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~  673 (1103)
                      .|+.+++...      +................+++..+|++.++....+.|..|+ ..++.+..+......+++++|.
T Consensus       171 ~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP~~~~T~~~FG  248 (295)
T d2ghsa1         171 RLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVPGKQTTCPAFI  248 (295)
T ss_dssp             EEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECSCSBEEEEEEE
T ss_pred             eeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCCCCceEEEEEe
Confidence            8988887421      1222222222223457899999999888888889999999 5678888888777778888887

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.19  E-value=0.00035  Score=71.55  Aligned_cols=223  Identities=13%  Similarity=0.066  Sum_probs=145.5

Q ss_pred             eEEEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCC
Q 001310          338 MSMDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK  417 (1103)
Q Consensus       338 ~~v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d  417 (1103)
                      .+..|++....|..+--..+.|.-||..+++...      |.               ....+.++++.++|.+++++ .+
T Consensus        21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~------~~---------------~~~~~~~i~~~~dg~l~va~-~~   78 (295)
T d2ghsa1          21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV------HA---------------LPFMGSALAKISDSKQLIAS-DD   78 (295)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE------EE---------------CSSCEEEEEEEETTEEEEEE-TT
T ss_pred             eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE------EE---------------CCCCcEEEEEecCCCEEEEE-eC
Confidence            3567887555566666667899999998886431      11               23568899999999877764 45


Q ss_pred             CeEEEEEecCCCccccceEecc--ccccEEEEEEecCCCceEEEEEcC----CCceEEEeCCCCceeEEeecCCCceEEE
Q 001310          418 HIVQLYAYHGGSDARQQLEIDA--HVGNVNDLAFSAPCKQISVITCGD----DKTIKVWDAVTGSRTYSFEGHGAPVYSL  491 (1103)
Q Consensus       418 ~~i~iwd~~~~~~~~~~~~l~~--h~~~v~~~~~s~d~~~~~l~s~~~----d~~i~iwd~~~~~~~~~~~~~~~~v~~~  491 (1103)
                      | +.++|..+++... ......  ....++.+.+.|+|+  +.++...    .+.-.+|.+..++....+.. -.....+
T Consensus        79 g-l~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~-~~~~Ng~  153 (295)
T d2ghsa1          79 G-LFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFAD-ISIPNSI  153 (295)
T ss_dssp             E-EEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEEE-ESSEEEE
T ss_pred             c-cEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEeec-cCCccee
Confidence            4 8999999886322 111111  223688999999998  4444322    22446676667765544432 2345667


Q ss_pred             EeeecCCcc-EEEEEECCCeEEEEEcCCCCe------e--EEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeC
Q 001310          492 CPHAKENIH-FIFSISVDGKIKAWLYDSLGA------R--VDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNE  562 (1103)
Q Consensus       492 ~~~~~~~~~-~l~s~~~dg~i~iwd~~~~~~------~--~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~  562 (1103)
                      ++++  ++. ++++.+..+.|..++++....      .  ............+++..+|++.++...    .+.|..||.
T Consensus       154 ~~s~--d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp  227 (295)
T d2ghsa1         154 CFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT  227 (295)
T ss_dssp             EECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT
T ss_pred             eecC--CCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC
Confidence            7754  444 556666788899888754321      1  122334556788999999997776543    445999995


Q ss_pred             CCCeeEEEEecccccCCceEEEEEc-CCCCEEEEEe
Q 001310          563 SEGAIKRTYQGLQLQHNSVSVVHFD-TAKDQILAAG  597 (1103)
Q Consensus       563 ~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~  597 (1103)
                       +|+.+..+....   ..+++++|. ++.+.|+..+
T Consensus       228 -~G~~~~~i~lP~---~~~T~~~FGG~d~~~LyvTt  259 (295)
T d2ghsa1         228 -DGNHIARYEVPG---KQTTCPAFIGPDASRLLVTS  259 (295)
T ss_dssp             -TCCEEEEEECSC---SBEEEEEEESTTSCEEEEEE
T ss_pred             -CCcEeeEecCCC---CceEEEEEeCCCCCEEEEEE
Confidence             688888887765   578999995 6767666543

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.15  E-value=4.8e-05  Score=77.92  Aligned_cols=228  Identities=13%  Similarity=0.102  Sum_probs=121.8

Q ss_pred             ccccCCccccCCccceeEecccCCcCceEEEecCCCceEEEEEcCCC-----cEEEEECCCCCeeeeeeeeEeecccccc
Q 001310          311 FQSFGETSFSDFPKTVAQTLIEGSSSPMSMDFHPVQHTLLLVGTNVG-----DTGLWDVNSGQKLFIRNFKVWDIGACSM  385 (1103)
Q Consensus       311 ~~~~~~~~~~~~p~~~~~~l~~h~~~V~~v~~spdg~~llasgs~d~-----~v~iwd~~~~~~~~~~~~~~~~~~~~~~  385 (1103)
                      |......++.++.....+.|..+.+.+...+|||||++++.+...++     .|.+++..+++.......          
T Consensus        17 f~~~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~~----------   86 (281)
T d1k32a2          17 FVCCDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITYF----------   86 (281)
T ss_dssp             EEETTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCCC----------
T ss_pred             EEeCCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeeec----------
Confidence            44444566667777777888888888999999999997666554332     477788877765431000          


Q ss_pred             ceeeeeccCCCccEEEEEECCCCCEEEEEeCC------CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEE
Q 001310          386 LFKTALVRDPGVSVNRVVWSPDGSLLGVAYSK------HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVI  459 (1103)
Q Consensus       386 ~~~~~~~~~h~~~V~~~~~spdg~~las~~~d------~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~  459 (1103)
                         .....+........+|+|||+.|+.....      ..+...+..++...      ..+...... .+.+++.. .++
T Consensus        87 ---~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~-~~~~~~~~-~~~  155 (281)
T d1k32a2          87 ---SGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFV------PLNLGPATH-ILFADGRR-VIG  155 (281)
T ss_dssp             ---CEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEE------ECCSCSCSE-EEEETTEE-EEE
T ss_pred             ---CCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeE------EecCCccce-eeecCCCe-EEE
Confidence               00011233456778999999999986432      23455555554321      122222333 34445543 333


Q ss_pred             EEcCCC-----------ceEEEeCCCCceeEEeecCCCceEEEEeeecCCccEEEEEECCC--eEEEEEcCCCCeeEEec
Q 001310          460 TCGDDK-----------TIKVWDAVTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYD  526 (1103)
Q Consensus       460 s~~~d~-----------~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~  526 (1103)
                      ....+.           .........+...... .+........+  .++ ..+.....++  .|.++|+++........
T Consensus       156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~--~~~-~~~~~~~~~~~~~l~~~d~~g~~~~~lt~  231 (281)
T d1k32a2         156 RNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIV-DMSTHVSSPVI--VGH-RIYFITDIDGFGQIYSTDLDGKDLRKHTS  231 (281)
T ss_dssp             ESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEE-CCSSCCEEEEE--ETT-EEEEEECTTSSCEEEEEETTSCSCEECCC
T ss_pred             eeccccceeeeeccCCcceeeeeccccceeecc-CCccccceeee--ecc-ccceecccccccceEEEeCCCCceEEeec
Confidence            332221           1111221222222222 22222222222  222 2333333333  46667777665544322


Q ss_pred             CCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE
Q 001310          527 APGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT  570 (1103)
Q Consensus       527 ~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~  570 (1103)
                      .....  ...|+|||+.|+...     ++.|+++|+.+++..+.
T Consensus       232 ~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i  268 (281)
T d1k32a2         232 FTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI  268 (281)
T ss_dssp             CCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred             CCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence            22223  346899999988754     33599999998876544

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.03  E-value=0.0085  Score=59.34  Aligned_cols=241  Identities=12%  Similarity=0.004  Sum_probs=151.6

Q ss_pred             CCEEEEEeCCCeEEEEEecCCCcc--ccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeEEeecCC
Q 001310          408 GSLLGVAYSKHIVQLYAYHGGSDA--RQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTYSFEGHG  485 (1103)
Q Consensus       408 g~~las~~~d~~i~iwd~~~~~~~--~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~  485 (1103)
                      |.+|+.+. .+.|+-.+++.....  .....+..+...+.+++|.+.++. +..+-..++.|+..++..+.....+....
T Consensus         1 ~~fLl~s~-~~~I~~~~ld~~~~~~~~~~~~~~~~~~~~~~ld~D~~~~~-iywsd~~~~~I~~~~l~g~~~~~v~~~~~   78 (263)
T d1npea_           1 GTHLLFAQ-TGKIERLPLERNTMKKTEAKAFLHIPAKVIIGLAFDCVDKV-VYWTDISEPSIGRASLHGGEPTTIIRQDL   78 (263)
T ss_dssp             CEEEEEEE-EEEEEEEEESSSCBCGGGCEEEEEEEEEEEEEEEEETTTTE-EEEEETTTTEEEEEESSSCCCEEEECTTC
T ss_pred             CCEEEEeC-CCeEEEEECCCccccccccccccccCCCcEEEEEEEeCCCE-EEEEECCCCeEEEEEcccCCcEEEEEecc
Confidence            34555553 346777777654322  112234445566888999988775 34455667789988887666555554444


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      ..+..+++.+.. +.+.++-...+.|.+.+++.................+++.|...+++...... ....|..-++...
T Consensus        79 ~~p~~iAvD~~~-~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~-~~~~I~r~~~dG~  156 (263)
T d1npea_          79 GSPEGIALDHLG-RTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNR-DNPKIETSHMDGT  156 (263)
T ss_dssp             CCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCS-SSCEEEEEETTSC
T ss_pred             ccccEEEEeccC-CeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCC-CCcEEEEecCCCC
Confidence            568888886543 34445556678999999987665554444446788999999888887654322 2334555566544


Q ss_pred             eeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECC
Q 001310          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE  643 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d  643 (1103)
                      .........   -.....+++.+.++.|+.+ ...+.|...++........+...   ....++++.  +..|... ...
T Consensus       157 ~~~~i~~~~---~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~---~~P~~lav~--~~~lYwtd~~~  228 (263)
T d1npea_         157 NRRILAQDN---LGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGL---QYPFAVTSY--GKNLYYTDWKT  228 (263)
T ss_dssp             CCEEEECTT---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECC---CSEEEEEEE--TTEEEEEETTT
T ss_pred             Cceeeeeec---ccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCC---CCcEEEEEE--CCEEEEEECCC
Confidence            333333222   2467899999888888766 46788999998765554444432   223567775  4455444 456


Q ss_pred             CeEEEEEcCCCCeeEec
Q 001310          644 NRIKILETPESNSVDAA  660 (1103)
Q Consensus       644 g~i~iw~~~~~~~~~~~  660 (1103)
                      +.|...+..+++.....
T Consensus       229 ~~I~~~~~~~g~~~~~~  245 (263)
T d1npea_         229 NSVIAMDLAISKEMDTF  245 (263)
T ss_dssp             TEEEEEETTTTEEEEEE
T ss_pred             CEEEEEECCCCccceEE
Confidence            88888888887666544

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.94  E-value=0.003  Score=70.72  Aligned_cols=192  Identities=14%  Similarity=0.124  Sum_probs=120.9

Q ss_pred             CeEEEEEcCCceeeEEecCCC------------------------------CCe-eEEEEcCCCCCEEEEEeC-------
Q 001310          823 GVISLYIVMTFKTILTIMPPS------------------------------PTA-TSLAFNPHDNNVIAIGMD-------  864 (1103)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~------------------------------~~i-~~l~~s~~d~~~lasg~~-------  864 (1103)
                      |.|.-+|..+|+.+.++..-.                              ..+ ..+++.+ ...++..+..       
T Consensus       178 G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~W~~~s~D~-~~~l~y~~tgn~~~~~~  256 (560)
T d1kv9a2         178 GFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWNR  256 (560)
T ss_dssp             CEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSCH
T ss_pred             ceEEEEECCCceEEeeeeeccccccCCccccccccccccccccccccccCCCCccccccccc-ccCeeeecCCCCccccc
Confidence            679999999999988764210                              011 2356667 5555554321       


Q ss_pred             ------------CCeEEEEEcCCceeEEEeccCCCCE---------EEEEEccCC---CEEEEEeCCCeEEEEEcCCCce
Q 001310          865 ------------DSTILIYNARSSEVISKLEGHSKRV---------TGLVFSDAL---NILVSSGGDAQIFVWDVDGWGI  920 (1103)
Q Consensus       865 ------------dg~v~iwd~~~~~~~~~l~~h~~~V---------~~l~~s~dg---~~l~s~s~dg~I~iwd~~~~~~  920 (1103)
                                  ...|.-.|+.+|+.+..++.....+         .-+.+..++   +.++.++.+|.+.++|-.+|+.
T Consensus       257 ~~~~~~~g~n~~s~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~  336 (560)
T d1kv9a2         257 EVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKL  336 (560)
T ss_dssp             HHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCE
T ss_pred             ccccccCCccccceeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCcc
Confidence                        2367777999999877665422111         112222344   4677788999999999999986


Q ss_pred             eeeeeeecC---------CCc-----------------ccCC--CCceEEEEcCCCCEEEEE-e----------------
Q 001310          921 QTCRSLQTP---------DGV-----------------MTLA--PSETHIQFHKDQTRFLLV-H----------------  955 (1103)
Q Consensus       921 ~~~~~~~~~---------~~~-----------------~~~~--~~v~~l~fs~dg~~l~~~-~----------------  955 (1103)
                      .........         .+.                 ....  ..-...+++|+..++.+. .                
T Consensus       337 i~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~  416 (560)
T d1kv9a2         337 ISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTR  416 (560)
T ss_dssp             EEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCC
T ss_pred             cccccccccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccc
Confidence            543211100         000                 0000  011356788888777762 1                


Q ss_pred             --------------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEe
Q 001310          956 --------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCR 1015 (1103)
Q Consensus       956 --------------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~ 1015 (1103)
                                          .+.+.-||+.+|+.+.+...+  .+..+-.++..|.++++++.||.++.+|.++|+.+-+
T Consensus       417 ~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~--~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~  494 (560)
T d1kv9a2         417 KAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP--THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQ  494 (560)
T ss_dssp             SSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCC--CCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEE
Confidence                                146888999999998775432  2333333455677888899999999999999999988


Q ss_pred             ec
Q 001310         1016 IL 1017 (1103)
Q Consensus      1016 ~~ 1017 (1103)
                      +.
T Consensus       495 ~~  496 (560)
T d1kv9a2         495 FE  496 (560)
T ss_dssp             EE
T ss_pred             EE
Confidence            77

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.013  Score=58.09  Aligned_cols=239  Identities=9%  Similarity=-0.048  Sum_probs=144.0

Q ss_pred             EEEEEeCCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCCCCc----eeEEeecCC
Q 001310          410 LLGVAYSKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGS----RTYSFEGHG  485 (1103)
Q Consensus       410 ~las~~~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~----~~~~~~~~~  485 (1103)
                      +|+.+... .|+-.++.+....    .+......+.+++|.+.++. +..+-..++.|.--++....    ....+....
T Consensus         3 fLl~s~~~-~I~~~~l~~~~~~----~~~~~~~~~~~id~d~~~~~-lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~   76 (266)
T d1ijqa1           3 YLFFTNRH-EVRKMTLDRSEYT----SLIPNLRNVVALDTEVASNR-IYWSDLSQRMICSTQLDRAHGVSSYDTVISRDI   76 (266)
T ss_dssp             EEEEECBS-SEEEEETTSCCCE----EEECSCSSEEEEEEETTTTE-EEEEETTTTEEEEEEC--------CEEEECSSC
T ss_pred             EEEEECCC-eEEEEECCCCcce----eeeCCCCceEEEEEEeCCCE-EEEEECCCCEEEEEEecCCCCCcceEEEEeCCC
Confidence            44444333 4888888765422    23334556789999988874 33344456667766654321    112223333


Q ss_pred             CceEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCC
Q 001310          486 APVYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEG  565 (1103)
Q Consensus       486 ~~v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~  565 (1103)
                      ..+..+++.+.. +.+..+-...+.|.+.+++.................+++.|...+|+.....  ....|...++...
T Consensus        77 ~~p~glAvD~~~-~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~--~~~~I~r~~~dGs  153 (266)
T d1ijqa1          77 QAPDGLAVDWIH-SNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWG--TPAKIKKGGLNGV  153 (266)
T ss_dssp             SCCCEEEEETTT-TEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECS--SSCEEEEEETTSC
T ss_pred             CCcceEEEeecc-ceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccC--CCcceeEeccCCC
Confidence            456678876543 3455555677889999998877666666556678899999977777665432  2345777776544


Q ss_pred             eeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEE-ECC
Q 001310          566 AIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVI-ANE  643 (1103)
Q Consensus       566 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d  643 (1103)
                      .........-   .....+++.+.++.|+.+ ...+.|...++....................+++.  +..|... ..+
T Consensus       154 ~~~~l~~~~~---~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~~~  228 (266)
T d1ijqa1         154 DIYSLVTENI---QWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDIIN  228 (266)
T ss_dssp             CEEEEECSSC---SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEETTT
T ss_pred             ceeccccccc---ceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEECCC
Confidence            4333332222   467899999988877776 45688998998765544444333332333466666  3444444 466


Q ss_pred             CeEEEEEcCCCCeeEeccc
Q 001310          644 NRIKILETPESNSVDAAGV  662 (1103)
Q Consensus       644 g~i~iw~~~~~~~~~~~~~  662 (1103)
                      +.|...+..++.....+..
T Consensus       229 ~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         229 EAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             TEEEEEETTTCCCCEEEEC
T ss_pred             CeEEEEECCCCcceEEEEc
Confidence            7888888777765554443

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.89  E-value=0.01  Score=66.24  Aligned_cols=197  Identities=11%  Similarity=-0.002  Sum_probs=115.9

Q ss_pred             EEEEc-CCCceEEEeCC-CCceeEEeecCCCc-----------eEEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEE
Q 001310          458 VITCG-DDKTIKVWDAV-TGSRTYSFEGHGAP-----------VYSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVD  524 (1103)
Q Consensus       458 l~s~~-~d~~i~iwd~~-~~~~~~~~~~~~~~-----------v~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~  524 (1103)
                      ++.++ .++.|...|.. +|+.+-++......           -..+++.    +..++.++.||.+.-.|.++++....
T Consensus        65 vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG~~~w~  140 (571)
T d2ad6a1          65 MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTGKINWE  140 (571)
T ss_dssp             EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhhhhhcc
Confidence            44444 46778888874 68888776421100           0122331    23678889999999999999988765


Q ss_pred             ecCCCc----cEEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeeEEEEeccccc---------------------
Q 001310          525 YDAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQLQ---------------------  577 (1103)
Q Consensus       525 ~~~~~~----~i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------  577 (1103)
                      ......    .+++--.-.++..+ .+....  ...+.|+-+|..+|+.+-.+......                     
T Consensus       141 ~~~~~~~~~~~~t~~p~v~~~~vi-vg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  219 (571)
T d2ad6a1         141 VEVCDPKVGSTLTQAPFVAKDTVL-MGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGL  219 (571)
T ss_dssp             EECCCGGGTCBCCSCCEEETTEEE-EECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSH
T ss_pred             ccccccccccceeecCeEeCCeEE-EeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccc
Confidence            543221    11111111234333 333211  13567999999999998776532100                     


Q ss_pred             -------------CCce-EEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCeeEEEEcCCCCC-----
Q 001310          578 -------------HNSV-SVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGL-----  622 (1103)
Q Consensus       578 -------------~~~v-~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~-----  622 (1103)
                                   ...+ ...++.++...++.+..                ...+.-.|.++|+.+-.++...+.     
T Consensus       220 ~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D  299 (571)
T d2ad6a1         220 GTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFA  299 (571)
T ss_dssp             HHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCC
T ss_pred             cccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccccccc
Confidence                         0111 23456677776666543                346778899999998777643221     


Q ss_pred             --CCCceEEEecCCC---EEEEEECCCeEEEEEcCCCCeeEe
Q 001310          623 --PENPRICFNKNGT---LLAVIANENRIKILETPESNSVDA  659 (1103)
Q Consensus       623 --~~v~~v~~s~~g~---~l~~~~~dg~i~iw~~~~~~~~~~  659 (1103)
                        ..........+++   .++.++.+|.+.++|..+++.+..
T Consensus       300 ~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~~i~~  341 (571)
T d2ad6a1         300 GVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGNLIVA  341 (571)
T ss_dssp             CCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCCEEEE
T ss_pred             cccccceeeeeccCccccceeeccccceEEEEecCCCcEeee
Confidence              1112222333454   467788899999999999988754

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.87  E-value=0.0014  Score=70.25  Aligned_cols=285  Identities=8%  Similarity=-0.045  Sum_probs=142.9

Q ss_pred             CceEEEecCCCceEEEEEcCC-----C------cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEE
Q 001310          336 SPMSMDFHPVQHTLLLVGTNV-----G------DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVW  404 (1103)
Q Consensus       336 ~V~~v~~spdg~~llasgs~d-----~------~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~  404 (1103)
                      .+...+...||+ +++.|+.+     +      .+.+||..+++-....                .....|.......++
T Consensus        21 ~~~~a~~~~~gk-v~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~   83 (387)
T d1k3ia3          21 PAAAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISM   83 (387)
T ss_dssp             CSEEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEE
T ss_pred             ccEEEEEeeCCE-EEEEEeecCcccCCCCCceeEEEEEECCCCcEeecC----------------CCCCCcccceeEEEE
Confidence            444555567887 56666532     1      3678888877533210                012233334456788


Q ss_pred             CCCCCEEEEEeCC-CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCC------CceEEEeCCCCce
Q 001310          405 SPDGSLLGVAYSK-HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDD------KTIKVWDAVTGSR  477 (1103)
Q Consensus       405 spdg~~las~~~d-~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d------~~i~iwd~~~~~~  477 (1103)
                      .+||++++.|+.+ ..+.+||..+..-.. ...+... ..-..++..+||+  +++.|+.+      ..+.+||..+.+-
T Consensus        84 ~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-~~~~~~~-r~~~~~~~~~dG~--v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3          84 DGNGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             CTTSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             ecCCcEEEeecCCCcceeEecCccCcccc-ccccccc-ccccceeeecCCc--eeeeccccccccccceeeeecCCCCce
Confidence            9999999998655 579999998764221 1111111 1223567778998  67776643      3689999887653


Q ss_pred             eEEee---------cCCCce----EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEec--CC------CccEEEEE
Q 001310          478 TYSFE---------GHGAPV----YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYD--AP------GLGCTRMA  536 (1103)
Q Consensus       478 ~~~~~---------~~~~~v----~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~------~~~i~~~~  536 (1103)
                      ...-.         .+...+    ....+ ...++..++.+..++.+.+++..+........  ..      ...-.++.
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (387)
T d1k3ia3         160 TSLPNAKVNPMLTADKQGLYRSDNHAWLF-GWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM  238 (387)
T ss_dssp             EEETTSCSGGGCCCCTTGGGTTTCSCCEE-ECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred             eecCCCcccccccccccceeeccceeEEE-EeCCCCEEEecCcCCcEEecCcccCcEeeccccccCcccCcccccccEEE
Confidence            22110         000000    00011 12245566666666666666655543222110  00      00112222


Q ss_pred             -EccCCCEEEEEecCCCC----ceeEEEEeCC---CCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC---------
Q 001310          537 -YSANGRRLFSCGTSKEG----ESFLVEWNES---EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD---------  599 (1103)
Q Consensus       537 -~s~dg~~l~~~~~~~~~----~~~i~iwd~~---~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------  599 (1103)
                       -..+++.++.++.....    .....+.+..   .................-.+....++++.++.|+.+         
T Consensus       239 ~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~  318 (387)
T d1k3ia3         239 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST  318 (387)
T ss_dssp             EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred             eeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccceeeeccCCeEEEECCcccCccCCCCc
Confidence             23467777776643211    1122233222   111111111111011223345556888888887743         


Q ss_pred             --CcEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC
Q 001310          600 --HVIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN  642 (1103)
Q Consensus       600 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~  642 (1103)
                        .++.+||..+.+-...-........-....+.+||+.++.|+.
T Consensus       319 ~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~l~~dG~v~v~GG~  363 (387)
T d1k3ia3         319 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG  363 (387)
T ss_dssp             BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred             EeceEEEEECCCCeEEECCCCCCcccceEEEEECCCCEEEEEeCC
Confidence              1478899887764332222111111123446789999999884

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.79  E-value=0.016  Score=65.00  Aligned_cols=202  Identities=11%  Similarity=0.063  Sum_probs=117.2

Q ss_pred             EEEEcCCCceEEEeC-CCCceeEEeecCCC----------ce-EEEEeeec--CCccEEEEEECCCeEEEEEcCCCCeeE
Q 001310          458 VITCGDDKTIKVWDA-VTGSRTYSFEGHGA----------PV-YSLCPHAK--ENIHFIFSISVDGKIKAWLYDSLGARV  523 (1103)
Q Consensus       458 l~s~~~d~~i~iwd~-~~~~~~~~~~~~~~----------~v-~~~~~~~~--~~~~~l~s~~~dg~i~iwd~~~~~~~~  523 (1103)
                      +++.+.++.+...|. .+|+.+-++.....          .+ +.+++...  ....+++.++.|+.|.-.|..+++...
T Consensus        66 y~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~w  145 (596)
T d1w6sa_          66 YIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETVW  145 (596)
T ss_dssp             EEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEE
T ss_pred             EEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCceec
Confidence            344444566777776 47888776642110          01 23343322  223478889999999999999998887


Q ss_pred             EecCCCc----cEEEEEEccCCCEEEEEecCC--CCceeEEEEeCCCCeeEEEEecccc---------------------
Q 001310          524 DYDAPGL----GCTRMAYSANGRRLFSCGTSK--EGESFLVEWNESEGAIKRTYQGLQL---------------------  576 (1103)
Q Consensus       524 ~~~~~~~----~i~~~~~s~dg~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~---------------------  576 (1103)
                      .+.....    .+++--.--+ ..++.+....  ...+.|+-+|..+|+.+-.+.....                     
T Consensus       146 ~~~~~d~~~~~~~t~~P~v~~-~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~  224 (596)
T d1w6sa_         146 KVENSDIKVGSTLTIAPYVVK-DKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKG  224 (596)
T ss_dssp             EEECCCGGGTCBCCSCCEEET-TEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTT
T ss_pred             cccccccccccccccCCcEEC-CeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccccc
Confidence            6643221    1111001113 3444443221  2357899999999999877643210                     


Q ss_pred             --------------cCCceEEEEEcCCCCEEEEEeC----------------CCcEEEEECCCCeeEEEEcCCCCCC---
Q 001310          577 --------------QHNSVSVVHFDTAKDQILAAGD----------------DHVIKIWDMNKVQLLTTIDAGGGLP---  623 (1103)
Q Consensus       577 --------------~~~~v~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~~---  623 (1103)
                                    ....-..+++.+....++.+..                ...|.-.|+.+|+.+-.++...+..   
T Consensus       225 ~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~  304 (596)
T d1w6sa_         225 LGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDY  304 (596)
T ss_dssp             HHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCC
T ss_pred             cccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceeccccCC
Confidence                          0011223456677777766543                2447788999999887775432210   


Q ss_pred             ---CCceEE-E-ecCCC---EEEEEECCCeEEEEEcCCCCeeEec
Q 001310          624 ---ENPRIC-F-NKNGT---LLAVIANENRIKILETPESNSVDAA  660 (1103)
Q Consensus       624 ---~v~~v~-~-s~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~  660 (1103)
                         ....+. . ..+|+   .++....+|.+.++|..+++.+...
T Consensus       305 d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~~i~~~  349 (596)
T d1w6sa_         305 AGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVSAN  349 (596)
T ss_dssp             CCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             ccccceeeeeccccccccccceeccccccceeeecCCCCceeeec
Confidence               111111 1 23443   5777888999999999999877543

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.70  E-value=0.0061  Score=68.41  Aligned_cols=381  Identities=12%  Similarity=0.085  Sum_probs=192.2

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCC----------ce-EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEe
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGA----------PV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDY  525 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~----------~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  525 (1103)
                      .++.++.++.|.-+|.++|+.+-++.....          .+ ..+.+.    ...++.++.|+.+.-.|..+++.....
T Consensus        79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~----~~~v~~~t~~g~l~alda~tG~~~W~~  154 (573)
T d1kb0a2          79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW----KGKVYVGAWDGRLIALDAATGKEVWHQ  154 (573)
T ss_dssp             EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE----TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred             EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE----CCcEEEEecccceeeeccccccceecc
Confidence            366677788899999999999987642210          11 111221    236777888999988898888887654


Q ss_pred             cCCCc---cE--EEEEEccCCCEEEEEecC--CCCceeEEEEeCCCCeeEEEEeccccc---------------------
Q 001310          526 DAPGL---GC--TRMAYSANGRRLFSCGTS--KEGESFLVEWNESEGAIKRTYQGLQLQ---------------------  577 (1103)
Q Consensus       526 ~~~~~---~i--~~~~~s~dg~~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~~---------------------  577 (1103)
                      .....   .+  ...-.-.++ .++++...  ....+.|+-+|..+|+.+-.+......                     
T Consensus       155 ~~~~~~~~~~~~~~~p~v~~~-~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~  233 (573)
T d1kb0a2         155 NTFEGQKGSLTITGAPRVFKG-KVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG  233 (573)
T ss_dssp             ETTTTCCSSCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred             cCccCCcceEEeecceEEEec-cEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence            33211   11  110011133 34443321  223567999999999998776432100                     


Q ss_pred             -------CCce-EEEEEcCCCCEEEEEeC-------------------CCcEEEEECCCCeeEEEEcCCCCC-------C
Q 001310          578 -------HNSV-SVVHFDTAKDQILAAGD-------------------DHVIKIWDMNKVQLLTTIDAGGGL-------P  623 (1103)
Q Consensus       578 -------~~~v-~~~~~~~~~~~l~~~~~-------------------dg~i~iwd~~~~~~~~~~~~~~~~-------~  623 (1103)
                             ...+ ...++.++...++.+..                   ...|.-.|.++++.....+...+.       .
T Consensus       234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~  313 (573)
T d1kb0a2         234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ  313 (573)
T ss_dssp             CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred             ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence                   0111 12455666666654331                   124666788888877665432211       1


Q ss_pred             CCceEEEecCC---CEEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeeccCCceEecCCCCCCCcc
Q 001310          624 ENPRICFNKNG---TLLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGIANGSVSVNEDPKEDVKP  700 (1103)
Q Consensus       624 ~v~~v~~s~~g---~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~  700 (1103)
                      .........++   ..++.++.+|.+.++|..+++.+........... ..+...                      +..
T Consensus       314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~-~~~~~~----------------------~~~  370 (573)
T d1kb0a2         314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWA-SGYDKH----------------------GKP  370 (573)
T ss_dssp             CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSE-EEECTT----------------------SCE
T ss_pred             eeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccc-cccccc----------------------cce
Confidence            11122222333   3567788899999999999988765442211100 000000                      000


Q ss_pred             ceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCC
Q 001310          701 EISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPP  780 (1103)
Q Consensus       701 l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~  780 (1103)
                      +           +.... ..........+.......-...+++|+...++....+....++..............     
T Consensus       371 ~-----------~~~~~-~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~-----  433 (573)
T d1kb0a2         371 I-----------GIAAA-RDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGK-----  433 (573)
T ss_dssp             E-----------ECGGG-GCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTS-----
T ss_pred             e-----------eeeec-cccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCc-----
Confidence            0           00000 000000011111111111124578888888887777655544433221110000000     


Q ss_pred             eeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCe-eEEEEcCCCCCEE
Q 001310          781 RLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVI  859 (1103)
Q Consensus       781 ~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~l  859 (1103)
                          +..+            .......  + +++.-......|.+.-||+.+++.+.+........ -.++.   .+.++
T Consensus       434 ----~~~g------------~~~~~~~--~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~lst---agglV  491 (573)
T d1kb0a2         434 ----PQSG------------TGWNTAK--F-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT---AGNVV  491 (573)
T ss_dssp             ----TTGG------------GTCCCCE--E-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEE
T ss_pred             ----cccc------------ccccccc--c-cccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEEE---cCCEE
Confidence                0000            0000000  0 00000000012578889999999887765332211 22333   45588


Q ss_pred             EEEeCCCeEEEEEcCCceeEEEeccCCCCE-EEEEEccCCC-EEEEE
Q 001310          860 AIGMDDSTILIYNARSSEVISKLEGHSKRV-TGLVFSDALN-ILVSS  904 (1103)
Q Consensus       860 asg~~dg~v~iwd~~~~~~~~~l~~h~~~V-~~l~~s~dg~-~l~s~  904 (1103)
                      ++|+.||.++.+|..+|+.+.++.--.+.. .-+.|..||+ +++..
T Consensus       492 F~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQYv~v~  538 (573)
T d1kb0a2         492 FQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVA  538 (573)
T ss_dssp             EEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            889999999999999999998876322111 1145566886 44443

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=97.70  E-value=0.0051  Score=65.63  Aligned_cols=125  Identities=10%  Similarity=0.163  Sum_probs=78.6

Q ss_pred             cEEEEEEccCCCEEEEEecCCC-------CceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCC-CcE
Q 001310          531 GCTRMAYSANGRRLFSCGTSKE-------GESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDD-HVI  602 (1103)
Q Consensus       531 ~i~~~~~s~dg~~l~~~~~~~~-------~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-g~i  602 (1103)
                      ++...+...+|+.++.++...+       ....+.+||..+++..........+.......++.+++..++.|+.+ ..+
T Consensus        21 ~~~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~  100 (387)
T d1k3ia3          21 PAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKT  100 (387)
T ss_dssp             CSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCE
T ss_pred             ccEEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcce
Confidence            3344455668888887774321       11247799999886543222111111223456788999888887654 689


Q ss_pred             EEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEECC------CeEEEEEcCCCCe
Q 001310          603 KIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIANE------NRIKILETPESNS  656 (1103)
Q Consensus       603 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d------g~i~iw~~~~~~~  656 (1103)
                      .+||..+..-...-..... ..-..++..+||++++.++.+      ..+.+||..+.+.
T Consensus       101 ~~yd~~~~~w~~~~~~~~~-r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W  159 (387)
T d1k3ia3         101 SLYDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW  159 (387)
T ss_dssp             EEEEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE
T ss_pred             eEecCccCccccccccccc-ccccceeeecCCceeeeccccccccccceeeeecCCCCce
Confidence            9999988766543322221 223567888899999998753      3588999887643

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=97.70  E-value=0.011  Score=66.14  Aligned_cols=192  Identities=8%  Similarity=0.049  Sum_probs=119.0

Q ss_pred             CCeEEEEEcCCceeeEEecCCC-------------------------------------CCe-eEEEEcCCCCCEEEEEe
Q 001310          822 GGVISLYIVMTFKTILTIMPPS-------------------------------------PTA-TSLAFNPHDNNVIAIGM  863 (1103)
Q Consensus       822 dg~i~iwd~~~~~~~~~~~~~~-------------------------------------~~i-~~l~~s~~d~~~lasg~  863 (1103)
                      .|.|.-+|+.+|+.+.++....                                     ..+ ...++.+ ...++..+.
T Consensus       175 ~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~-~~g~~y~~t  253 (571)
T d2ad6a1         175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS  253 (571)
T ss_dssp             CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred             cCcEEEEECCCCcEEEEEeccCCcccccccccccccccccCcccccccccCCcccccCCCccccccccch-hcCeeeeec
Confidence            4789999999999988654221                                     111 2346666 555555554


Q ss_pred             C----------------CCeEEEEEcCCceeEEEeccCCC---------CEEEEEEccCCC---EEEEEeCCCeEEEEEc
Q 001310          864 D----------------DSTILIYNARSSEVISKLEGHSK---------RVTGLVFSDALN---ILVSSGGDAQIFVWDV  915 (1103)
Q Consensus       864 ~----------------dg~v~iwd~~~~~~~~~l~~h~~---------~V~~l~~s~dg~---~l~s~s~dg~I~iwd~  915 (1103)
                      .                ...+.-.|..+|+.+..++.+..         ......+..+++   .++.++.+|.+.+.|.
T Consensus       254 g~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr  333 (571)
T d2ad6a1         254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNR  333 (571)
T ss_dssp             CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEET
T ss_pred             ccccCccccccccccccccceeeeeccchhheecccccCccccccccccccceeeeeccCccccceeeccccceEEEEec
Confidence            3                24678889999998877764221         112222233453   4677889999999999


Q ss_pred             CCCceeeeeeeecC--------------------------------CCcccCCCCceEEEEcCCCCEEEEE-eC------
Q 001310          916 DGWGIQTCRSLQTP--------------------------------DGVMTLAPSETHIQFHKDQTRFLLV-HE------  956 (1103)
Q Consensus       916 ~~~~~~~~~~~~~~--------------------------------~~~~~~~~~v~~l~fs~dg~~l~~~-~d------  956 (1103)
                      .+|+..........                                .+... ...-...+++|+..++.+. .+      
T Consensus       334 ~tG~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~G-g~~w~~~a~dP~~~~~yv~~~~~~~~~~  412 (571)
T d2ad6a1         334 ENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMG-FHNQGVDSYDPESRTLYAGLNHICMDWE  412 (571)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTC-SSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred             CCCcEeeeeccCCcccccccccccccccccCcccccccccCceEEEecccc-ccccccceECCCCceEEEeccccccccc
Confidence            99886532111000                                00000 0001236788887776652 11      


Q ss_pred             -------------------------------CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEE
Q 001310          957 -------------------------------THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIH 1005 (1103)
Q Consensus       957 -------------------------------~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vW 1005 (1103)
                                                     |.|.-+|+.+|+.+.+...+.  +..+-..+..+.++++++.||.++-+
T Consensus       413 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~--~~~~g~l~TagglVf~G~~dg~l~A~  490 (571)
T d2ad6a1         413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKF--AAWGGTLYTKGGLVWYATLDGYLKAL  490 (571)
T ss_dssp             ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESS--CCCSBCEEETTTEEEEECTTSEEEEE
T ss_pred             cccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCC--CCCcceeEecCCEEEEECCCCeEEEE
Confidence                                           357788999999887644322  22222233456677889999999999


Q ss_pred             eCCCceeEEeec
Q 001310         1006 EASNLEVQCRIL 1017 (1103)
Q Consensus      1006 d~~~~~~~~~~~ 1017 (1103)
                      |.++|+.+-++.
T Consensus       491 Da~tGe~lW~~~  502 (571)
T d2ad6a1         491 DNKDGKELWNFK  502 (571)
T ss_dssp             ETTTCCEEEEEE
T ss_pred             ECCCCcEEEEEE
Confidence            999999998887

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.68  E-value=0.032  Score=55.01  Aligned_cols=223  Identities=13%  Similarity=0.053  Sum_probs=139.8

Q ss_pred             CCccEEEEEECCCCCEEEEEe-CCCeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeCC
Q 001310          395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDAV  473 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~  473 (1103)
                      +...+..++|.+..+.|.... .++.|...++.++....   .+......+..+++..-+.. +.++-...+.|.+.++.
T Consensus        34 ~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~d  109 (263)
T d1npea_          34 PAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMD  109 (263)
T ss_dssp             EEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETT
T ss_pred             CCCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecC
Confidence            445688899998877776654 55778888887654322   23333356889999876664 33455667789999987


Q ss_pred             CCceeEEeecCCCceEEEEeeecCCccEEEEEECCC--eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          474 TGSRTYSFEGHGAPVYSLCPHAKENIHFIFSISVDG--KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       474 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      .......+......+..++++|. .+.++.+-...+  .|..-+++...........-.....+++.+.++.|+.+-.  
T Consensus       110 g~~~~~l~~~~l~~p~~l~vdp~-~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~--  186 (263)
T d1npea_         110 GTQRRVLFDTGLVNPRGIVTDPV-RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--  186 (263)
T ss_dssp             SCSCEEEECSSCSSEEEEEEETT-TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET--
T ss_pred             CceEEEEecccccCCcEEEEecc-cCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC--
Confidence            66544334444467888888764 333444433323  3444455554444444434456689999998888877642  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcCCCCCCCCceEEE
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDAGGGLPENPRICF  630 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~  630 (1103)
                       +.+.|...++........+.+..    ....+++.  +.+|+.. ...+.|...|..+++.+..+..... .....+++
T Consensus       187 -~~~~I~~~~~~g~~~~~v~~~~~----~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v  258 (263)
T d1npea_         187 -GTHRAECLNPAQPGRRKVLEGLQ----YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITI  258 (263)
T ss_dssp             -TTTEEEEEETTEEEEEEEEECCC----SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEE
T ss_pred             -CCCEEEEEECCCCCeEEEECCCC----CcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEE
Confidence             25578888887655444444433    34567765  4556555 4678899999999988877654332 23445655


Q ss_pred             ec
Q 001310          631 NK  632 (1103)
Q Consensus       631 s~  632 (1103)
                      .+
T Consensus       259 ~~  260 (263)
T d1npea_         259 AL  260 (263)
T ss_dssp             EC
T ss_pred             eC
Confidence            44

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=97.67  E-value=0.025  Score=62.93  Aligned_cols=80  Identities=16%  Similarity=0.191  Sum_probs=52.5

Q ss_pred             CeEEEEEcCCceeeEEecCCCCCe-eEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC-EEEEEEccCCC-
Q 001310          823 GVISLYIVMTFKTILTIMPPSPTA-TSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSKR-VTGLVFSDALN-  899 (1103)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~~~i-~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~-V~~l~~s~dg~-  899 (1103)
                      |.+.-||+.+++.+.+........ -.++.   .+.++++|+.||.++.+|..+|+.+.+++-..+. -.-+.+..||+ 
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~T---agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLST---AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEE---TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEE---CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            467889999999887765322111 12333   3458888999999999999999999887642211 11245566885 


Q ss_pred             EEEEEe
Q 001310          900 ILVSSG  905 (1103)
Q Consensus       900 ~l~s~s  905 (1103)
                      ++++.+
T Consensus       515 yv~v~a  520 (560)
T d1kv9a2         515 YVAIMA  520 (560)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            555444

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=97.61  E-value=0.024  Score=63.50  Aligned_cols=192  Identities=14%  Similarity=0.171  Sum_probs=119.8

Q ss_pred             CeEEEEEcCCceeeEEecCCC-------------------------------------C-CeeEEEEcCCCCCEEEEEeC
Q 001310          823 GVISLYIVMTFKTILTIMPPS-------------------------------------P-TATSLAFNPHDNNVIAIGMD  864 (1103)
Q Consensus       823 g~i~iwd~~~~~~~~~~~~~~-------------------------------------~-~i~~l~~s~~d~~~lasg~~  864 (1103)
                      |.|+-+|..+|+.+.++....                                     . .-..+++.+ ...++..+..
T Consensus       182 G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~~~~~~~tw~g~~~~~gg~~~W~~~s~D~-~~~lvy~~tg  260 (596)
T d1w6sa_         182 GYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGTG  260 (596)
T ss_dssp             CEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEECC
T ss_pred             CceEEEECCCCcEEEEeeccCCccccccccccccccccccccccccccCCCCceecCCCcccccccccc-CCCeeecccc
Confidence            789999999999988754211                                     0 112446666 4555555533


Q ss_pred             ----------------CCeEEEEEcCCceeEEEecc--CC-------CCEEEEE-EccCC---CEEEEEeCCCeEEEEEc
Q 001310          865 ----------------DSTILIYNARSSEVISKLEG--HS-------KRVTGLV-FSDAL---NILVSSGGDAQIFVWDV  915 (1103)
Q Consensus       865 ----------------dg~v~iwd~~~~~~~~~l~~--h~-------~~V~~l~-~s~dg---~~l~s~s~dg~I~iwd~  915 (1103)
                                      ...|.-.|+.+|+.+..++.  |.       ....-+. ...+|   +.++..+.+|.+.++|-
T Consensus       261 ~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~Wd~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr  340 (596)
T d1w6sa_         261 NPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDR  340 (596)
T ss_dssp             CCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEET
T ss_pred             cccccccccccccccccccccccccccccccccccceeccccCCccccceeeeeccccccccccceeccccccceeeecC
Confidence                            23578889999998877654  21       1111111 12344   46788899999999999


Q ss_pred             CCCceeeeeeeecCCC------------------cccC--------C-----CCceEEEEcCCCCEEEEE-e--------
Q 001310          916 DGWGIQTCRSLQTPDG------------------VMTL--------A-----PSETHIQFHKDQTRFLLV-H--------  955 (1103)
Q Consensus       916 ~~~~~~~~~~~~~~~~------------------~~~~--------~-----~~v~~l~fs~dg~~l~~~-~--------  955 (1103)
                      .+|+............                  ....        .     ..-..++++|+..++.+. .        
T Consensus       341 ~tG~~i~~~~~~~~~~~~~~~d~~~~~p~~~~~~~~~~~~~~~~i~pg~~Gg~nw~~~a~dp~~~l~yvp~~~~~~~~~~  420 (596)
T d1w6sa_         341 TDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDWEP  420 (596)
T ss_dssp             TTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEEE
T ss_pred             CCCceeeeccccccccccccccccccccccCccccccCCccceeEecccccccccCccccCCCCceEEeccccccccccc
Confidence            9998664321110000                  0000        0     001235667776655441 1        


Q ss_pred             -------------------------------CCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEE
Q 001310          956 -------------------------------ETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSI 1004 (1103)
Q Consensus       956 -------------------------------d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~v 1004 (1103)
                                                     -|.|.-||..+|+.+.+...  ..++.+-.++..|.+++.|+.||.++.
T Consensus       421 ~~~~~~~g~~~~g~~~~~~~~~~g~~~~~~~~G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A  498 (596)
T d1w6sa_         421 FMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKA  498 (596)
T ss_dssp             CCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEE
T ss_pred             ccccccccccccccccccccCcccCcccCCCcceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEE
Confidence                                           14688889999988766432  233333344566778888999999999


Q ss_pred             EeCCCceeEEeec
Q 001310         1005 HEASNLEVQCRIL 1017 (1103)
Q Consensus      1005 Wd~~~~~~~~~~~ 1017 (1103)
                      +|.++|+.+-++.
T Consensus       499 ~Da~TGe~LW~~~  511 (596)
T d1w6sa_         499 RDSDTGDLLWKFK  511 (596)
T ss_dssp             EETTTCCEEEEEE
T ss_pred             EECCCCcEeeEEE
Confidence            9999999998887

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=97.61  E-value=0.0091  Score=64.44  Aligned_cols=252  Identities=12%  Similarity=0.072  Sum_probs=138.8

Q ss_pred             CCcCceEEEecCCCceEEEEEcCCC----cEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCC
Q 001310          333 GSSSPMSMDFHPVQHTLLLVGTNVG----DTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDG  408 (1103)
Q Consensus       333 h~~~V~~v~~spdg~~llasgs~d~----~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg  408 (1103)
                      +.-.+..+++||||++++.+-+.+|    .+++.|+.+|+.+.. .+                 .  ......++|++|+
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~-~i-----------------~--~~~~~~~~W~~D~  182 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD-VL-----------------E--RVKFSCMAWTHDG  182 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE-EE-----------------E--EECSCCEEECTTS
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc-cc-----------------c--cccccceEEcCCC
Confidence            3334456688999997665554444    699999999987642 11                 0  1122458999999


Q ss_pred             CEEEEEeCC----------------CeEEEEEecCCCccccceEecccc--ccEEEEEEecCCCceEEEEEc-CCCceEE
Q 001310          409 SLLGVAYSK----------------HIVQLYAYHGGSDARQQLEIDAHV--GNVNDLAFSAPCKQISVITCG-DDKTIKV  469 (1103)
Q Consensus       409 ~~las~~~d----------------~~i~iwd~~~~~~~~~~~~l~~h~--~~v~~~~~s~d~~~~~l~s~~-~d~~i~i  469 (1103)
                      +.|.....+                ..|..|.+.+...-. ...+....  ..+..+..++|++.+++.+.. .+....+
T Consensus       183 ~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d-~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~  261 (430)
T d1qfma1         183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSED-ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRL  261 (430)
T ss_dssp             SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGC-EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEE
T ss_pred             CEEEEEEeccccCcccccccccCCcceEEEEECCCCcccc-ccccccccCCceEEeeeccCCcceeeEEeeccCCccEEE
Confidence            988765322                257777777653221 11233332  346677889999963333332 3344555


Q ss_pred             E--eCCCCc--------eeEEeecCCCceEEEEeeecCCccEEEEEE---CCCeEEEEEcCCCCe---eEEecCCCccEE
Q 001310          470 W--DAVTGS--------RTYSFEGHGAPVYSLCPHAKENIHFIFSIS---VDGKIKAWLYDSLGA---RVDYDAPGLGCT  533 (1103)
Q Consensus       470 w--d~~~~~--------~~~~~~~~~~~v~~~~~~~~~~~~~l~s~~---~dg~i~iwd~~~~~~---~~~~~~~~~~i~  533 (1103)
                      |  |+....        ....+.........+..   .++.+++...   .++.|...++.....   ...+..+...+.
T Consensus       262 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~  338 (430)
T d1qfma1         262 WYCDLQQESNGITGILKWVKLIDNFEGEYDYVTN---EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVL  338 (430)
T ss_dssp             EEEEGGGSSSSSCSSCCCEEEECSSSSCEEEEEE---ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEE
T ss_pred             EEeeCCCcccccccccceeEeecccccceEEEec---CCceeecccCcccccceeEEecCCCCccccceEEecccCccee
Confidence            5  433221        11222222222322221   1223333332   235666667665433   222333444454


Q ss_pred             EEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEe----CCCcEEEEECCC
Q 001310          534 RMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG----DDHVIKIWDMNK  609 (1103)
Q Consensus       534 ~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~  609 (1103)
                      .-.++..+.+|+..... ++...|++++..++..........   +.+..+...++...+...-    .-.+++-+|+.+
T Consensus       339 ~~~~~~~~~~lvl~~~~-~~~~~l~v~~~~~~~~~~~~~~~~---~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t  414 (430)
T d1qfma1         339 EWVACVRSNFLVLCYLH-DVKNTLQLHDLATGALLKIFPLEV---GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK  414 (430)
T ss_dssp             EEEEEETTTEEEEEEEE-TTEEEEEEEETTTCCEEEEECCCS---SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred             eeEEEEECCEEEEEEEc-CCEeEEEEEECCCCcEEEecCCCC---ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCC
Confidence            44555556666655432 457789999999887765544333   5666666556665554432    347788999988


Q ss_pred             Cee
Q 001310          610 VQL  612 (1103)
Q Consensus       610 ~~~  612 (1103)
                      ++.
T Consensus       415 ~~~  417 (430)
T d1qfma1         415 EEL  417 (430)
T ss_dssp             SSC
T ss_pred             CCc
Confidence            754

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.60  E-value=0.036  Score=53.57  Aligned_cols=230  Identities=11%  Similarity=0.094  Sum_probs=142.7

Q ss_pred             EEecCCCceEEEEEcCCCcEEEEECCCCCeeeeeeeeEeeccccccceeeeeccCCCccEEEEEECCCCCEEEEEeCCCe
Q 001310          340 MDFHPVQHTLLLVGTNVGDTGLWDVNSGQKLFIRNFKVWDIGACSMLFKTALVRDPGVSVNRVVWSPDGSLLGVAYSKHI  419 (1103)
Q Consensus       340 v~~spdg~~llasgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~~~~spdg~~las~~~d~~  419 (1103)
                      .-.+|..+ ++|.=+ ..++.|+|+++.+.++.+.+                    ..+|..-.|-.+. .|+-.+ +..
T Consensus        68 AIMhP~~~-IiALra-g~~LQiFnletK~klks~~~--------------------~e~VvfWkWis~~-~L~lVT-~ta  123 (327)
T d1utca2          68 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHTM--------------------TDDVTFWKWISLN-TVALVT-DNA  123 (327)
T ss_dssp             EEECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEEC--------------------SSCCCEEEESSSS-EEEEEC-SSE
T ss_pred             hhcCCCCc-EEEEec-CCeEEEEehhHhhhhceEEc--------------------CCCcEEEEecCCC-EEEEEc-CCc
Confidence            34568777 565544 46899999999998876443                    3577778887544 555543 456


Q ss_pred             EEEEEecCCCccccceEeccccc----cEEEEEEecCCCceEEEEEc-----CCCceEEEeCCCCceeEEeecCCCceEE
Q 001310          420 VQLYAYHGGSDARQQLEIDAHVG----NVNDLAFSAPCKQISVITCG-----DDKTIKVWDAVTGSRTYSFEGHGAPVYS  490 (1103)
Q Consensus       420 i~iwd~~~~~~~~~~~~l~~h~~----~v~~~~~s~d~~~~~l~s~~-----~d~~i~iwd~~~~~~~~~~~~~~~~v~~  490 (1103)
                      |+=|++++..  .+...+..|..    .|..-..+++.+++.|+.-+     -.|.+.+|..+. +.-+.++||.+....
T Consensus       124 VYHW~~~g~s--~P~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F~~  200 (327)
T d1utca2         124 VYHWSMEGES--QPVKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASFAQ  200 (327)
T ss_dssp             EEEEESSSSC--CCEEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEEEE
T ss_pred             eEEEcccCCC--CchhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeeeEE
Confidence            9999996543  23334555543    57777788888863332221     235788998554 445678888777666


Q ss_pred             EEeeecCCcc-EEEEEE---CCCeEEEEEcCCCCe--------eEEecC----CCccEEEEEEccCCCEEEEEecCCCCc
Q 001310          491 LCPHAKENIH-FIFSIS---VDGKIKAWLYDSLGA--------RVDYDA----PGLGCTRMAYSANGRRLFSCGTSKEGE  554 (1103)
Q Consensus       491 ~~~~~~~~~~-~l~s~~---~dg~i~iwd~~~~~~--------~~~~~~----~~~~i~~~~~s~dg~~l~~~~~~~~~~  554 (1103)
                      +.+....... +++.+.   ..+.+++-++.....        ...+..    ...-..++.+|+.-..++..+.    .
T Consensus       201 ~~~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK----~  276 (327)
T d1utca2         201 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y  276 (327)
T ss_dssp             ECCTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----T
T ss_pred             EEcCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----C
Confidence            6554332222 333322   236788888865321        111211    1223457788887777777764    6


Q ss_pred             eeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEEeCCCcEE
Q 001310          555 SFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAAGDDHVIK  603 (1103)
Q Consensus       555 ~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  603 (1103)
                      |.|++||+.++.++..-+-..   ..|...+-..+..-+++...+|.|.
T Consensus       277 G~i~lyDleTgt~i~~nRIs~---~~iF~~a~~~~~~Gi~~VNr~GqVl  322 (327)
T d1utca2         277 GYIHLYDLETGTCIYMNRISG---ETIFVTAPHEATAGIIGVNRKGQVL  322 (327)
T ss_dssp             SEEEEEETTTCCEEEEEECCS---SCEEEEEEETTTTEEEEEETTSEEE
T ss_pred             cEEEEEEcccccEEEEeecCC---CceEEeccCCCCceEEEECCCCeEE
Confidence            789999999999887665544   5566555555555566666666554

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=97.57  E-value=0.0091  Score=66.95  Aligned_cols=186  Identities=12%  Similarity=0.042  Sum_probs=102.8

Q ss_pred             eEEEEEcCCceeeEEecCCCC---------CeeEEEEcCCC--CCEEEEEeCCCeEEEEEcCCceeEEEeccCCCC----
Q 001310          824 VISLYIVMTFKTILTIMPPSP---------TATSLAFNPHD--NNVIAIGMDDSTILIYNARSSEVISKLEGHSKR----  888 (1103)
Q Consensus       824 ~i~iwd~~~~~~~~~~~~~~~---------~i~~l~~s~~d--~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~~----  888 (1103)
                      .|.-.|..+++....++....         +........++  ...++.++.+|.++++|..+|+.+.........    
T Consensus       284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~~  363 (573)
T d1kb0a2         284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASG  363 (573)
T ss_dssp             EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred             eEEEecccchheeecccccCcccccccccceeeecceecCCCceeeeeeccccceeEEeccccccccccccccccccccc
Confidence            355667777776655443211         11122222211  246788889999999999999877554321100    


Q ss_pred             -------------------------------EEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCC
Q 001310          889 -------------------------------VTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAP  937 (1103)
Q Consensus       889 -------------------------------V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~  937 (1103)
                                                     -..++++|+..++.....+....++.....+...     ...+......
T Consensus       364 ~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~-----~~~~~~~~g~  438 (573)
T d1kb0a2         364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQ-----AGPGKPQSGT  438 (573)
T ss_dssp             ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTC-----CCTTSTTGGG
T ss_pred             cccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeeccccccccc-----CCCCcccccc
Confidence                                           0124677777777776666655555554422111     0000000000


Q ss_pred             CceEEEEcCCCCEEEEEeCCeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          938 SETHIQFHKDQTRFLLVHETHLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       938 ~v~~l~fs~dg~~l~~~~d~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      ......+ +++.-.....-|.+.-||+.+|+.+.+...+  .+..+-..+..|.++++|+.||.++.+|.++|+.+.++.
T Consensus       439 ~~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~--~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~  515 (573)
T d1kb0a2         439 GWNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHV--SPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP  515 (573)
T ss_dssp             TCCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEES--SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             ccccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCC--CCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEE
Confidence            0000000 0000000012257888999999998775432  222222345678888899999999999999999998887

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.57  E-value=0.033  Score=62.29  Aligned_cols=59  Identities=14%  Similarity=0.109  Sum_probs=46.6

Q ss_pred             CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEEeec
Q 001310          957 THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQCRIL 1017 (1103)
Q Consensus       957 ~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~~~~ 1017 (1103)
                      |.|.-+|+.+|+.+.+...++  ++.+-..+..|..+++|+.||.++.+|.+||+.+-++.
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~--p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~  524 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHL--PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ  524 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESS--CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEcCCCCcEEeecCCCC--CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence            568889999999988754432  33333345677888889999999999999999998887

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.53  E-value=0.052  Score=53.52  Aligned_cols=216  Identities=10%  Similarity=-0.047  Sum_probs=132.8

Q ss_pred             CCccEEEEEECCCCCEEEEEe-CCCeEEEEEecCCCccccc-eEeccccccEEEEEEecCCCceEEEEEcCCCceEEEeC
Q 001310          395 PGVSVNRVVWSPDGSLLGVAY-SKHIVQLYAYHGGSDARQQ-LEIDAHVGNVNDLAFSAPCKQISVITCGDDKTIKVWDA  472 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~-~d~~i~iwd~~~~~~~~~~-~~l~~h~~~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~  472 (1103)
                      ....+.+++|.+..++|.-.. ..+.|.--++......... ..+......+..+++.+.+.. +.++-...+.|.+.++
T Consensus        28 ~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          28 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT  106 (266)
T ss_dssp             SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred             CCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEec
Confidence            445678999999888777664 4566776666542211111 122233345678899887775 3445566778999998


Q ss_pred             CCCceeEEeecCCCceEEEEeeecCCccEEEEE-ECCCeEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCC
Q 001310          473 VTGSRTYSFEGHGAPVYSLCPHAKENIHFIFSI-SVDGKIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSK  551 (1103)
Q Consensus       473 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~-~~dg~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~  551 (1103)
                      ........+.........+++++. ++.++.+. +..+.|...+++...........-.....+++.+.++.|+.+-.  
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~--  183 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS--  183 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred             CCceEEEEEcCCCCCcceEEEEcc-cCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC--
Confidence            877665556656667888888764 33444443 23456777777665555444444456789999999888887743  


Q ss_pred             CCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCeeEEEEcC
Q 001310          552 EGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQLLTTIDA  618 (1103)
Q Consensus       552 ~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~  618 (1103)
                       ..+.|...++............. .......+++.  +.+|+.. ..++.|+..+..+++....+..
T Consensus       184 -~~~~I~~~~~dG~~~~~~~~~~~-~~~~p~~lav~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~~  247 (266)
T d1ijqa1         184 -KLHSISSIDVNGGNRKTILEDEK-RLAHPFSLAVF--EDKVFWTDIINEAIFSANRLTGSDVNLLAE  247 (266)
T ss_dssp             -TTTEEEEEETTSCSCEEEEECTT-TTSSEEEEEEE--TTEEEEEETTTTEEEEEETTTCCCCEEEEC
T ss_pred             -CcCEEEEEECCCCCEEEEEeCCC-cccccEEEEEE--CCEEEEEECCCCeEEEEECCCCcceEEEEc
Confidence             24578888886554433333322 11345566665  3455554 4678888888888776665543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.48  E-value=0.031  Score=57.29  Aligned_cols=198  Identities=12%  Similarity=0.132  Sum_probs=126.8

Q ss_pred             EEEEec---CCCceEEEEEcCCCceEEEeCCCCceeEEeec-CCCceEEEEeeecCCccEEEEEECCC------------
Q 001310          446 DLAFSA---PCKQISVITCGDDKTIKVWDAVTGSRTYSFEG-HGAPVYSLCPHAKENIHFIFSISVDG------------  509 (1103)
Q Consensus       446 ~~~~s~---d~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~dg------------  509 (1103)
                      .+++..   ||++ +++.-..+..|-+-|+.+-++.+.+.. ....+..+.....++..+++..+.+.            
T Consensus        89 ~~S~TdGtyDGry-lFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d  167 (459)
T d1fwxa2          89 HMSFTEGKYDGRF-LFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMED  167 (459)
T ss_dssp             EEEEETTEEEEEE-EEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTC
T ss_pred             cccccCCccceeE-EEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccc
Confidence            455644   7885 566777889999999999998765543 33455666666666777888877633            


Q ss_pred             ------eEEEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCC-----------ceeEEEE------------
Q 001310          510 ------KIKAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEG-----------ESFLVEW------------  560 (1103)
Q Consensus       510 ------~i~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~-----------~~~i~iw------------  560 (1103)
                            .+.++|.++.+......... ....+.++++|+++++.+.+.+.           ...+.++            
T Consensus       168 ~~~y~~~~t~ID~~tm~V~~QV~V~g-~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~G  246 (459)
T d1fwxa2         168 VANYVNVFTAVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAG  246 (459)
T ss_dssp             GG-EEEEEEEEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHT
T ss_pred             hhhcceEEEEEecCCceEEEEeeeCC-ChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcC
Confidence                  35678888777666554333 45578999999999987653221           1123333            


Q ss_pred             -----------eCCCC---eeEEEEecccccCCceEEEEEcCCCCEEEEEe-CCCcEEEEECCCCee------------E
Q 001310          561 -----------NESEG---AIKRTYQGLQLQHNSVSVVHFDTAKDQILAAG-DDHVIKIWDMNKVQL------------L  613 (1103)
Q Consensus       561 -----------d~~~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~------------~  613 (1103)
                                 |....   ..++.+...    .....+.++|||+++++++ -+.++.|+|++.-..            .
T Consensus       247 k~~eingV~VVD~~~~~~~~v~~yIPVp----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~  322 (459)
T d1fwxa2         247 DYQELNGVKVVDGRKEASSLFTRYIPIA----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV  322 (459)
T ss_dssp             CSEEETTEEEEECSGG--CSSEEEEEEE----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred             CcEEeCCceeecccccCCcceeEEEecC----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence                       32211   111112211    3456788999999998865 789999999864211            1


Q ss_pred             EEEcCCCCCCCCceEEEecCCCEEEEEECCCeEEEEEcC
Q 001310          614 TTIDAGGGLPENPRICFNKNGTLLAVIANENRIKILETP  652 (1103)
Q Consensus       614 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~dg~i~iw~~~  652 (1103)
                      ....  -+. .-...+|+.+|+-..+..-|..|.-|++.
T Consensus       323 ~e~e--lgl-gPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         323 AEPE--LGL-GPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             ECCB--CCS-CEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             eecc--cCc-CccccccCCCceEEEEeeccceEEEEecc
Confidence            1111  111 23567888888666666689999999985

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.45  E-value=0.057  Score=52.17  Aligned_cols=196  Identities=13%  Similarity=0.131  Sum_probs=131.9

Q ss_pred             EEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCc-eeEEEeccC
Q 001310          807 CFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSS-EVISKLEGH  885 (1103)
Q Consensus       807 ~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~-~~~~~l~~h  885 (1103)
                      +.-..|..+.||.-+..+++++|+++.+.+....-. ..|.--.|-.  .+.|+..+ +..|+-|++... .+.+.++.|
T Consensus        67 sAIMhP~~~IiALrag~~LQiFnletK~klks~~~~-e~VvfWkWis--~~~L~lVT-~taVYHW~~~g~s~P~k~fdR~  142 (327)
T d1utca2          67 SAIMNPASKVIALKAGKTLQIFNIEMKSKMKAHTMT-DDVTFWKWIS--LNTVALVT-DNAVYHWSMEGESQPVKMFDRH  142 (327)
T ss_dssp             EEEECSSSSEEEEEETTEEEEEETTTTEEEEEEECS-SCCCEEEESS--SSEEEEEC-SSEEEEEESSSSCCCEEEEECC
T ss_pred             hhhcCCCCcEEEEecCCeEEEEehhHhhhhceEEcC-CCcEEEEecC--CCEEEEEc-CCceEEEcccCCCCchhhhhhc
Confidence            556779999999888889999999999998887633 4666677764  45677665 457999999542 466677666


Q ss_pred             C----CCEEEEEEccCCCEEEEEe---C----CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC-----C
Q 001310          886 S----KRVTGLVFSDALNILVSSG---G----DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ-----T  949 (1103)
Q Consensus       886 ~----~~V~~l~~s~dg~~l~s~s---~----dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg-----~  949 (1103)
                      .    ..|..-..++|.+|++..|   .    .|.+.+|.++.+.      -+..+||..     .-..+--+|     .
T Consensus       143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~------sQ~ieGhaa-----~F~~~~~~g~~~~~~  211 (327)
T d1utca2         143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV------SQPIEGHAA-----SFAQFKMEGNAEEST  211 (327)
T ss_dssp             GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTE------EEEECCSEE-----EEEEECCTTCSSCEE
T ss_pred             ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCc------Cccccceee-----eeEEEEcCCCCCCce
Confidence            4    4678888899999988654   2    3678899988743      334555532     112222222     2


Q ss_pred             EEEEE----eCCeEEEEECCCce---E------EEEeeCCC--CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeEE
Q 001310          950 RFLLV----HETHLAIYEAEELT---C------LKQWFPIS--SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQC 1014 (1103)
Q Consensus       950 ~l~~~----~d~~v~iwd~~~~~---~------~~~~~~~h--~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~~ 1014 (1103)
                      +++.+    ..++++|.++....   .      +..++++.  .+-..++..|+.-..+..-+.-|.|.+||++++..+.
T Consensus       212 lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~  291 (327)
T d1utca2         212 LFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIY  291 (327)
T ss_dssp             EEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEE
T ss_pred             EEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEE
Confidence            23323    22578888886421   1      11112221  4444577788877788888899999999999999986


Q ss_pred             eec
Q 001310         1015 RIL 1017 (1103)
Q Consensus      1015 ~~~ 1017 (1103)
                      +-+
T Consensus       292 ~nR  294 (327)
T d1utca2         292 MNR  294 (327)
T ss_dssp             EEE
T ss_pred             Eee
Confidence            655

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=97.37  E-value=0.18  Score=56.04  Aligned_cols=383  Identities=12%  Similarity=0.063  Sum_probs=191.5

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCC--------Cce-EEEEeeecCCccEEEEEECCCeEEEEEcCCCCeeEEecC
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHG--------APV-YSLCPHAKENIHFIFSISVDGKIKAWLYDSLGARVDYDA  527 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~--------~~v-~~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  527 (1103)
                      .|+.++.++.|.-.|.++|+.+-++....        ..+ ..+++    .+..++.++.|+.+.-.|..+++.......
T Consensus        70 ~vy~~t~~~~v~AlDa~TG~~lW~~~~~~~~~~~~~~~~~~rg~a~----~~~~i~~~t~~~~l~alda~tG~~~W~~~~  145 (582)
T d1flga_          70 VIYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKF  145 (582)
T ss_dssp             EEEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEEC
T ss_pred             EEEEeCCCCeEEEEeCCCCCeEEEEcCCCCCccccccccccCCceE----eCCceEEecCCCeEEEecccccceeeeecc
Confidence            36677788889999999999987764211        001 11222    124678889999999899998887764332


Q ss_pred             CCcc----E--EEEEEcc--CCCEEEEEecCC---CCceeEEEEeCCCCeeEEEEeccccc-------------------
Q 001310          528 PGLG----C--TRMAYSA--NGRRLFSCGTSK---EGESFLVEWNESEGAIKRTYQGLQLQ-------------------  577 (1103)
Q Consensus       528 ~~~~----i--~~~~~s~--dg~~l~~~~~~~---~~~~~i~iwd~~~~~~~~~~~~~~~~-------------------  577 (1103)
                      ....    .  ....+.+  .+..++..+...   ...+.|.-+|..+|+.+-.+......                   
T Consensus       146 ~~~~~~~~~~~~p~~~~~~~~~~~~~i~g~~~~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~d~~~~g~~~~~~  225 (582)
T d1flga_         146 ADHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPS  225 (582)
T ss_dssp             SCGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTT
T ss_pred             cCCCccceeecCceEecCCcEeEEEEEeCccccccccccceEEecCCCCcEEEEEeccCCcccccccccccccccccccc
Confidence            1110    0  0011111  233444332211   23456888999999887765432100                   


Q ss_pred             ------------------CCc-eEEEEEcCCCCEEEEEeC------------------------CCcEEEEECCCCeeEE
Q 001310          578 ------------------HNS-VSVVHFDTAKDQILAAGD------------------------DHVIKIWDMNKVQLLT  614 (1103)
Q Consensus       578 ------------------~~~-v~~~~~~~~~~~l~~~~~------------------------dg~i~iwd~~~~~~~~  614 (1103)
                                        ... -..+++.+....++.+..                        ...+.-.|..+|+..-
T Consensus       226 ~~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~~~vy~~tgn~~p~~~~~~~~~g~~~~~~dn~ys~SvvAld~~tG~~~W  305 (582)
T d1flga_         226 WPDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKW  305 (582)
T ss_dssp             SCBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEE
T ss_pred             CCCccccccCCccceecCCCcccccceeccccceEEeccCCcccccccccccCCCCcCcccccccceeEEecccchhhhh
Confidence                              011 123567777777766531                        2346677888998887


Q ss_pred             EEcCCCCCCC-------CceEEEe-cCCC---EEEEEECCCeEEEEEcCCCCeeEeccccccceeeeEEecCCceeeeec
Q 001310          615 TIDAGGGLPE-------NPRICFN-KNGT---LLAVIANENRIKILETPESNSVDAAGVLSDNLRKLSVNPISTVTGAGI  683 (1103)
Q Consensus       615 ~~~~~~~~~~-------v~~v~~s-~~g~---~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~  683 (1103)
                      .++...+...       ...+.+. .+++   .++..+.++.+.++|..+++.+...................       
T Consensus       306 ~~q~~~~D~wd~d~~~~p~l~d~~~~~g~~~~~v~~~~k~g~~~vldr~tG~~i~~~~~~~~~~~~~~~d~~~-------  378 (582)
T d1flga_         306 FYQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKT-------  378 (582)
T ss_dssp             EEESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTT-------
T ss_pred             cccccccccccccccccccccccccccccccceeEeecccccEEeecccCCcccccccccCcccccccccccc-------
Confidence            7764332111       0111121 2333   56667889999999999998776544333322222111100       


Q ss_pred             cCCceEecCCCCCCCccceeeccccccccccccccCCccceeeeccCccccccEEEEEEecCCcEEEEeecCceEEEeec
Q 001310          684 ANGSVSVNEDPKEDVKPEISVEAENKSEVEKPLFARPSECQSLLLPSKVKANKISRLTYNNGGQAIFALASNGVHLMWRW  763 (1103)
Q Consensus       684 ~~~~~~~~~~~s~d~~~l~s~~~d~~i~~w~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~g~~l~~~~~dg~i~vw~~  763 (1103)
                        +.........+   .+....             ..........|.......-...+++|+...+.+...+....+|.-
T Consensus       379 --~~~~~~~~~~~---~~~~~~-------------~~~~~~~~~~P~~~gg~~w~~~a~dp~~g~~yvp~~~~~~~~~~~  440 (582)
T d1flga_         379 --GRPVEREGQRP---PLPEPG-------------QKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTE  440 (582)
T ss_dssp             --CCEEECTTCSC---CCCCTT-------------CSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEEC
T ss_pred             --ccceecccccc---cccccc-------------ccccceEEECCCccCCcccccceecCCCCceeeeccccccccccc
Confidence              00000000000   000000             000000001111111112224567777666666655533333321


Q ss_pred             CCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCCEEEEEcCCeEEEEEcCCceeeEEecCCC
Q 001310          764 PRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDAYLFSASGGVISLYIVMTFKTILTIMPPS  843 (1103)
Q Consensus       764 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~~~~~~~~~~~  843 (1103)
                      ....                  ..+            ..........-+-.    ....|.+.-+|+.+++.+.+...+.
T Consensus       441 ~~~~------------------~~g------------~~~~~~~~~~~~~~----~~~~G~l~AiD~~TG~i~W~~~~~~  486 (582)
T d1flga_         441 EVSY------------------TKG------------SAYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEHL  486 (582)
T ss_dssp             CCCC------------------CTT------------SCCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEESS
T ss_pred             cccc------------------ccc------------ccccccCccccccc----cCCCCeEEEEcCCCCcEEeecCCCC
Confidence            1100                  000            00000011110000    0013678888999998887765433


Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEeccCCC-CEEEEEEccCCC-EEEEE
Q 001310          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEGHSK-RVTGLVFSDALN-ILVSS  904 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~h~~-~V~~l~~s~dg~-~l~s~  904 (1103)
                      . +..-.++. .+.++++|+.||.++.+|..+|+.+.+++--.. .-.-+.+..||+ +++..
T Consensus       487 p-~~~g~lst-agglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G~qYv~i~  547 (582)
T d1flga_         487 P-LWAGVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLGVT  547 (582)
T ss_dssp             C-CCSCCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             C-CccceeEE-cCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEE
Confidence            2 22111223 455888899999999999999999988764221 111256677885 45543

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.20  E-value=0.024  Score=58.16  Aligned_cols=188  Identities=10%  Similarity=0.087  Sum_probs=122.6

Q ss_pred             cCCCEEEEEc--CCeEEEEEcCCceeeEEecC-CCCCeeEEEEcCC-CCCEEEEEeCC------------------CeEE
Q 001310          812 KNDAYLFSAS--GGVISLYIVMTFKTILTIMP-PSPTATSLAFNPH-DNNVIAIGMDD------------------STIL  869 (1103)
Q Consensus       812 ~d~~~l~~~~--dg~i~iwd~~~~~~~~~~~~-~~~~i~~l~~s~~-d~~~lasg~~d------------------g~v~  869 (1103)
                      +||+++.+..  +++|.+.|+.+.++.+.+.. ....+..+...++ ...|++.++.+                  +.+.
T Consensus        97 yDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t  176 (459)
T d1fwxa2          97 YDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT  176 (459)
T ss_dssp             EEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEE
T ss_pred             cceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEE
Confidence            4899999987  58899999999998665443 3345666666441 44577766653                  2467


Q ss_pred             EEEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCC---------------eEEEEEc-------------------
Q 001310          870 IYNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDA---------------QIFVWDV-------------------  915 (1103)
Q Consensus       870 iwd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg---------------~I~iwd~-------------------  915 (1103)
                      +.|..+.+...+..- .+....+++++||+++++.+.+.               .+.+++.                   
T Consensus       177 ~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~  255 (459)
T d1fwxa2         177 AVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK  255 (459)
T ss_dssp             EEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred             EEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCce
Confidence            889998887766653 23466799999999999877432               1333333                   


Q ss_pred             ----CCCc-eeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE--eCCeEEEEECCCceE------------EEEeeCC
Q 001310          916 ----DGWG-IQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV--HETHLAIYEAEELTC------------LKQWFPI  976 (1103)
Q Consensus       916 ----~~~~-~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~--~d~~v~iwd~~~~~~------------~~~~~~~  976 (1103)
                          .... ....+.+....       ....+.++|||++++++  -+.++.|+|++.-..            ..+  ..
T Consensus       256 VVD~~~~~~~~v~~yIPVpK-------sPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e--~e  326 (459)
T d1fwxa2         256 VVDGRKEASSLFTRYIPIAN-------NPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAE--PE  326 (459)
T ss_dssp             EEECSGG--CSSEEEEEEES-------SCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEEEC--CB
T ss_pred             eecccccCCcceeEEEecCC-------CCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEEee--cc
Confidence                2100 00011122222       35578999999999996  678999999963211            111  11


Q ss_pred             CCcCeEEEEEccCCCEEEEEecCCcEEEEeCCC
Q 001310          977 SSVPISQATFSCDCRMVFTSFVDGTLSIHEASN 1009 (1103)
Q Consensus       977 h~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~ 1009 (1103)
                      ..-.-..-+|+.+|.-..|---|..|.-|++..
T Consensus       327 lglgPLht~fd~~g~aytslfids~v~kw~~~~  359 (459)
T d1fwxa2         327 LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  359 (459)
T ss_dssp             CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             cCcCccccccCCCceEEEEeeccceEEEEecch
Confidence            244556678888886555556899999999864

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.97  E-value=0.059  Score=57.74  Aligned_cols=248  Identities=9%  Similarity=0.009  Sum_probs=125.8

Q ss_pred             CCccEEEEEECCCCCEEEEEe-CC----CeEEEEEecCCCccccceEeccccccEEEEEEecCCCceEEEEEcC------
Q 001310          395 PGVSVNRVVWSPDGSLLGVAY-SK----HIVQLYAYHGGSDARQQLEIDAHVGNVNDLAFSAPCKQISVITCGD------  463 (1103)
Q Consensus       395 h~~~V~~~~~spdg~~las~~-~d----~~i~iwd~~~~~~~~~~~~l~~h~~~v~~~~~s~d~~~~~l~s~~~------  463 (1103)
                      +.-.+..+++|||++++|.+- ..    ..|++.|+.+|+.+..  .+.  ......++|++|++. ++.+.-.      
T Consensus       123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~--~~~~~~~~W~~D~~~-~~Y~~~~~~~~~~  197 (430)
T d1qfma1         123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE--RVKFSCMAWTHDGKG-MFYNAYPQQDGKS  197 (430)
T ss_dssp             SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE--EECSCCEEECTTSSE-EEEEECCCCSSCC
T ss_pred             ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--ccc--cccccceEEcCCCCE-EEEEEeccccCcc
Confidence            444456678999999999662 23    3699999999875431  121  112257899999995 2333211      


Q ss_pred             ---------CCceEEEeCCCCcee--EEeecCCCc--eEEEEeeecCCccEEEEEEC---CCeEEEE--EcCCCCe----
Q 001310          464 ---------DKTIKVWDAVTGSRT--YSFEGHGAP--VYSLCPHAKENIHFIFSISV---DGKIKAW--LYDSLGA----  521 (1103)
Q Consensus       464 ---------d~~i~iwd~~~~~~~--~~~~~~~~~--v~~~~~~~~~~~~~l~s~~~---dg~i~iw--d~~~~~~----  521 (1103)
                               ...|..|.+.++..-  ..+......  +..+..  +.++.+++....   ++...+|  ++.....    
T Consensus       198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~--s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~  275 (430)
T d1qfma1         198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAEL--SDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITG  275 (430)
T ss_dssp             SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEE--CTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred             cccccccCCcceEEEEECCCCccccccccccccCCceEEeeec--cCCcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence                     124777777765432  333333333  333333  556667654332   3334444  4332211    


Q ss_pred             ----eEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCee--EEEEecccccCCceEEEEEcCCCCEEEE
Q 001310          522 ----RVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAI--KRTYQGLQLQHNSVSVVHFDTAKDQILA  595 (1103)
Q Consensus       522 ----~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~  595 (1103)
                          ............ ... .+|..++.-+.....++.|...++.....  ...+-.+.  ...+..-.+...+.+|+.
T Consensus       276 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~--~~~~~~~~~~~~~~~lvl  351 (430)
T d1qfma1         276 ILKWVKLIDNFEGEYD-YVT-NEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEH--EKDVLEWVACVRSNFLVL  351 (430)
T ss_dssp             SCCCEEEECSSSSCEE-EEE-EETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCC--SSCEEEEEEEETTTEEEE
T ss_pred             ccceeEeecccccceE-EEe-cCCceeecccCcccccceeEEecCCCCccccceEEeccc--CcceeeeEEEEECCEEEE
Confidence                111122222222 222 23444444443333456777777765432  12222222  133443334444556665


Q ss_pred             E-eCCC--cEEEEECCCCeeEEEEcCCCCCCCCceEEEecCCCEEEEEEC----CCeEEEEEcCCCC
Q 001310          596 A-GDDH--VIKIWDMNKVQLLTTIDAGGGLPENPRICFNKNGTLLAVIAN----ENRIKILETPESN  655 (1103)
Q Consensus       596 ~-~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----dg~i~iw~~~~~~  655 (1103)
                      . ..++  .|++++..++..........  ..+..+...++...+.....    -.++.-+|+.+++
T Consensus       352 ~~~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~  416 (430)
T d1qfma1         352 CYLHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE  416 (430)
T ss_dssp             EEEETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred             EEEcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence            4 3444  57889998887765543332  22333444455544443322    2677888887764

>d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.94  E-value=0.0026  Score=46.86  Aligned_cols=54  Identities=19%  Similarity=0.382  Sum_probs=45.8

Q ss_pred             hHHHHHHHHHhhhhcChhHHHHHHHHhcCCChh--HHHHHHHhcCcCHHHHHHHhc
Q 001310            5 NKDLVFLILQFLNEEGFTESAHMLERESRFYFD--MKFFEDMILDGKWEDVEQYLS   58 (1103)
Q Consensus         5 ~~e~~rli~q~L~~~g~~~s~~~L~~Es~~~~~--~~~~~~~i~~g~w~~~~~~l~   58 (1103)
                      ++|+-+=|++||..+||.+++.+|.+|..+.++  ...-...+|+=+|..++.+=.
T Consensus         7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQk   62 (76)
T d1uuja_           7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK   62 (76)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHH
Confidence            578999999999999999999999999988765  566667788888988876643

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.47  E-value=0.82  Score=45.97  Aligned_cols=198  Identities=12%  Similarity=0.190  Sum_probs=111.4

Q ss_pred             cCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEe------cCCCEE
Q 001310          744 NGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALS------KNDAYL  817 (1103)
Q Consensus       744 ~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s------~d~~~l  817 (1103)
                      |+...++.+...+-+.+|+++...                       +...      ..+.+..+.+-      ....-+
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~G~~-----------------------l~~~------~~Gr~NNVDvr~~~~l~~~~~di   88 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLEGKM-----------------------LHSY------HTGKLNNVDIRYDFPLNGKKVDI   88 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETTCCE-----------------------EEEC------CSSCEEEEEEEEEEEETTEEEEE
T ss_pred             cCccEEEEEcCcCCEEEEcCCCcE-----------------------EEec------ccCCcCccccccccccCCcceEE
Confidence            455667777777778888875322                       2111      12333443332      223345


Q ss_pred             EEEcC-----CeEEEEEcCC-ceeeEEecCCC-------CCeeEEEE--cCCCCC-EEEEEeCCCeEEEEEcC---Cc--
Q 001310          818 FSASG-----GVISLYIVMT-FKTILTIMPPS-------PTATSLAF--NPHDNN-VIAIGMDDSTILIYNAR---SS--  876 (1103)
Q Consensus       818 ~~~~d-----g~i~iwd~~~-~~~~~~~~~~~-------~~i~~l~~--s~~d~~-~lasg~~dg~v~iwd~~---~~--  876 (1103)
                      +++++     .+|.+|.+.. ...+..+....       ..+..+|+  ++.++. ++++...+|.+..|.+.   .+  
T Consensus        89 ~vasnR~~~~~~l~~~~id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v  168 (353)
T d1h6la_          89 AAASNRSEGKNTIEIYAIDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYI  168 (353)
T ss_dssp             EEEEECCTTTCEEEEEEEETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSE
T ss_pred             EEEeCCcCcceeEEEEEecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCce
Confidence            55552     2578887752 23333333221       24556666  664565 56667778999888763   22  


Q ss_pred             --eeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCC-cccCCCCceEEEEcC--CCC-E
Q 001310          877 --EVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDG-VMTLAPSETHIQFHK--DQT-R  950 (1103)
Q Consensus       877 --~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~-~~~~~~~v~~l~fs~--dg~-~  950 (1103)
                        +.++.+. -...+..|++.+....|..+-++.-|..++.+.........+....+ +.  .+.+..++.-.  ++. +
T Consensus       169 ~~~lvr~f~-~~~q~EGCVvDde~~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l--~~D~EGlaiy~~~~~~Gy  245 (353)
T d1h6la_         169 SGKKVRAFK-MNSQTEGMAADDEYGSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHL--TPDIEGLTIYYAADGKGY  245 (353)
T ss_dssp             EEEEEEEEE-CSSCEEEEEEETTTTEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSC--CSCEEEEEEEECGGGCEE
T ss_pred             eeEeeeccC-CCCccceEEEeCCCCcEEEecCccceEEEEeccCCCccceeeecccCccc--cCCccccEEEEcCCCCeE
Confidence              3445554 34578999999998899988887766555554322112222222222 22  23577777543  333 6


Q ss_pred             EEEE--eCCeEEEEECCCc-eEEEEe
Q 001310          951 FLLV--HETHLAIYEAEEL-TCLKQW  973 (1103)
Q Consensus       951 l~~~--~d~~v~iwd~~~~-~~~~~~  973 (1103)
                      |+++  .+++..+||..+. +.+..+
T Consensus       246 livSsQG~n~f~vydr~~~~~~~g~F  271 (353)
T d1h6la_         246 LLASSQGNSSYAIYERQGQNKYVADF  271 (353)
T ss_dssp             EEEEEGGGTEEEEEESSTTCCEEEEE
T ss_pred             EEEEcCCCCeEEEEecCCCccccceE
Confidence            6664  7789999998763 555443

>d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.89  E-value=0.015  Score=50.80  Aligned_cols=82  Identities=11%  Similarity=0.175  Sum_probs=62.1

Q ss_pred             ccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHH
Q 001310           67 RYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSA  140 (1103)
Q Consensus        67 ~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~  140 (1103)
                      .+.. ++|+++-+.|+||+.+|+.++|..++++.-..+.....+.+++|..+....++.+.+....+...      .+.+
T Consensus        41 EL~~-lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s  119 (149)
T d2nxpa1          41 ELSQ-LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDS  119 (149)
T ss_dssp             HHGG-GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHH
Confidence            3344 99999999999999999999999999997666666677889999999888887776654443222      1445


Q ss_pred             HHHHHHHHH
Q 001310          141 RKNMMLELK  149 (1103)
Q Consensus       141 r~~l~~~l~  149 (1103)
                      -..|+..|+
T Consensus       120 ~~lLl~~L~  128 (149)
T d2nxpa1         120 YQLLKRHLQ  128 (149)
T ss_dssp             HHHHHHHHT
T ss_pred             HHHHHHHHH
Confidence            556666665

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=94.19  E-value=2.2  Score=42.81  Aligned_cols=158  Identities=8%  Similarity=0.094  Sum_probs=90.2

Q ss_pred             EEEEecCCCceEEEEEc------------CCCceEEEeCCCCcee-EEe--ecCC-----CceEEEEeeecCCcc-EEEE
Q 001310          446 DLAFSAPCKQISVITCG------------DDKTIKVWDAVTGSRT-YSF--EGHG-----APVYSLCPHAKENIH-FIFS  504 (1103)
Q Consensus       446 ~~~~s~d~~~~~l~s~~------------~d~~i~iwd~~~~~~~-~~~--~~~~-----~~v~~~~~~~~~~~~-~l~s  504 (1103)
                      +++..|||.  .+++++            ..|.|.++|+.+.+.. ..+  .+..     -....+.+....++. +|++
T Consensus        39 Di~~~~dg~--~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~v  116 (340)
T d1v04a_          39 DLEILPNGL--AFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  116 (340)
T ss_dssp             EEEECTTSE--EEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             eEEECCCCc--EEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEE
Confidence            566677765  444443            1478899998765432 222  2111     123444444444554 3444


Q ss_pred             EE---CCCeEEEEEcCCCCeeEE----ec-CCCccEEEEEEccCCCEEEEEecC-------------CCCceeEEEEeCC
Q 001310          505 IS---VDGKIKAWLYDSLGARVD----YD-APGLGCTRMAYSANGRRLFSCGTS-------------KEGESFLVEWNES  563 (1103)
Q Consensus       505 ~~---~dg~i~iwd~~~~~~~~~----~~-~~~~~i~~~~~s~dg~~l~~~~~~-------------~~~~~~i~iwd~~  563 (1103)
                      ..   ...+|.+|++........    .. ......+.+++..+|..+++--..             +...+.+.-||..
T Consensus       117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~  196 (340)
T d1v04a_         117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  196 (340)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSS
T ss_pred             EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCC
Confidence            43   456788888865543322    12 122357889999999888773110             0123445555543


Q ss_pred             CCeeEEEEecccccCCceEEEEEcCCCCEEEEE-eCCCcEEEEECCCCe
Q 001310          564 EGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA-GDDHVIKIWDMNKVQ  611 (1103)
Q Consensus       564 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~  611 (1103)
                        +......+ -   ...+.++++|++++|+.+ +..+.|++|++....
T Consensus       197 --~~~~~~~~-l---~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~  239 (340)
T d1v04a_         197 --DVRVVAEG-F---DFANGINISPDGKYVYIAELLAHKIHVYEKHANW  239 (340)
T ss_dssp             --CEEEEEEE-E---SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTS
T ss_pred             --ceEEEcCC-C---CccceeEECCCCCEEEEEeCCCCeEEEEEeCCCc
Confidence              33222332 2   468899999999888765 467889999887543

>d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Encephalitozoon cuniculi [TaxId: 6035]

Probab=93.93  E-value=0.03  Score=47.46  Aligned_cols=78  Identities=13%  Similarity=0.241  Sum_probs=56.1

Q ss_pred             hhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHHHHHHH
Q 001310           72 IYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSARKNMM  145 (1103)
Q Consensus        72 ~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~r~~l~  145 (1103)
                      ++|+++-+.||||+.+|..++|..++++.-..+. ...+.+++|+.+.+..++.+++....+...      .+.+-..|+
T Consensus        27 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s~~lL~  105 (131)
T d2j4ba1          27 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI  105 (131)
T ss_dssp             GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHHHHHHH
Confidence            9999999999999999999999999998655554 356778888888887777665543332211      144455566


Q ss_pred             HHHHH
Q 001310          146 LELKQ  150 (1103)
Q Consensus       146 ~~l~~  150 (1103)
                      ..|++
T Consensus       106 ~fL~~  110 (131)
T d2j4ba1         106 NFLEE  110 (131)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            66653

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=93.21  E-value=2.5  Score=42.85  Aligned_cols=186  Identities=6%  Similarity=-0.029  Sum_probs=105.6

Q ss_pred             cEEEEEEecCCcEEEEeecCceEEEeecCCCccccccccccccCCeeecCCCCCceeeccCCCCCCCCCeeEEEEecCCC
Q 001310          736 KISRLTYNNGGQAIFALASNGVHLMWRWPRNDLTLSTEATTKVPPRLYQPRHGPQFMVNDTTDSNSQEAVPCFALSKNDA  815 (1103)
Q Consensus       736 ~i~~~~~s~~g~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s~d~~  815 (1103)
                      ...-+++++....+++++.++ +.|.....-........           .........      ....|..++|+.|  
T Consensus        38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~-----------~~~~~~~~~------~ip~v~~vafs~d--   97 (381)
T d1xipa_          38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDS-----------TPLTFKWEK------EIPDVIFVCFHGD--   97 (381)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSS-----------CCCCCSEEE------ECTTEEEEEEETT--
T ss_pred             ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccC-----------CCCcceecc------CCCCeEEEEeeCC--
Confidence            445678888888888888775 44544321100000000           000001111      1235888899755  


Q ss_pred             EEEEEcCCeEEEEEcCCceeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeEEEecc-----CCCCEE
Q 001310          816 YLFSASGGVISLYIVMTFKTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVISKLEG-----HSKRVT  890 (1103)
Q Consensus       816 ~l~~~~dg~i~iwd~~~~~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~~~l~~-----h~~~V~  890 (1103)
                      .++...++.+..++..+............++..+.+.| .  .++....+|.+.++++..++......+     -.+.+.
T Consensus        98 ~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p-~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~  174 (381)
T d1xipa_          98 QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN-N--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQL  174 (381)
T ss_dssp             EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS-S--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEE
T ss_pred             EEEEEeCCCEEEEEeeccccccccccccccccceecCC-c--eeEEEecCCCEEEEEeccCccccccCCcceEEecCCce
Confidence            57777778888888876555444444456788888887 3  566677889999999998764332211     235678


Q ss_pred             EEEEccCCCEEEEEeCCCeEEEE-EcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEE
Q 001310          891 GLVFSDALNILVSSGGDAQIFVW-DVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLL  953 (1103)
Q Consensus       891 ~l~~s~dg~~l~s~s~dg~I~iw-d~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~  953 (1103)
                      +++|++.|+.++++..++ ..+- ++..     ...+..+..   ....|.++.|-....++++
T Consensus       175 ~v~ws~kgkq~v~~~g~~-~q~k~~i~~-----~~~~~~p~~---~~~~v~sI~WL~~~~F~vv  229 (381)
T d1xipa_         175 AVLLKDRSFQSFAWRNGE-MEKQFEFSL-----PSELEELPV---EEYSPLSVTILSPQDFLAV  229 (381)
T ss_dssp             EEEETTSCEEEEEEETTE-EEEEEEECC-----CHHHHTSCT---TTSEEEEEEESSSSEEEEE
T ss_pred             EEEEeCCcEEEEEeCCCc-eeeccCCCC-----ccccCCCcC---CCcceeEEEEecCceEEEE
Confidence            888888888887764332 1111 1111     001111111   1125778888887777776

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=92.91  E-value=5.1  Score=39.89  Aligned_cols=188  Identities=14%  Similarity=0.153  Sum_probs=105.6

Q ss_pred             EEEEEcCCCceEEEeCCCCceeEEeecCCCceEEEEeee----cCCccEEEEEEC--C--CeEEEEEcCCCCe-eEEecC
Q 001310          457 SVITCGDDKTIKVWDAVTGSRTYSFEGHGAPVYSLCPHA----KENIHFIFSISV--D--GKIKAWLYDSLGA-RVDYDA  527 (1103)
Q Consensus       457 ~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~l~s~~~--d--g~i~iwd~~~~~~-~~~~~~  527 (1103)
                      +++....++-|++||+ .|+.++.+.  .+.++.+....    ..+...++.++.  +  .+|.+|.++.... ...+..
T Consensus        42 lI~gTdK~~Gl~vYdL-~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~  118 (353)
T d1h6la_          42 KLITTNKKSGLAVYSL-EGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITD  118 (353)
T ss_dssp             EEEEEETTSCCEEEET-TCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSC
T ss_pred             EEEEEcCcCCEEEEcC-CCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccccc
Confidence            5565566667999997 588887764  35566655431    122223444542  2  3688888764332 222222


Q ss_pred             C-------CccEEEEEE--ccC-CCEEEEEecCCCCceeEEEEeC---CCC----eeEEEEecccccCCceEEEEEcCCC
Q 001310          528 P-------GLGCTRMAY--SAN-GRRLFSCGTSKEGESFLVEWNE---SEG----AIKRTYQGLQLQHNSVSVVHFDTAK  590 (1103)
Q Consensus       528 ~-------~~~i~~~~~--s~d-g~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~~~v~~~~~~~~~  590 (1103)
                      .       ...+..+|+  ++. |...+.... +  ++.+..|.+   ..+    +.++.+..    ...+..|.+..+.
T Consensus       119 ~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~-k--~G~v~q~~l~~~~~g~v~~~lvr~f~~----~~q~EGCVvDde~  191 (353)
T d1h6la_         119 PNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG-K--EGEFEQYELNADKNGYISGKKVRAFKM----NSQTEGMAADDEY  191 (353)
T ss_dssp             SSSCEECSSSSCCCEEEEECTTTCCEEEEEEC-S--SSEEEEEEEEECTTSSEEEEEEEEEEC----SSCEEEEEEETTT
T ss_pred             cccccccccCcceEEEEEecCCCCeEEEEEEc-C--CceEEEEEEEcCCCCceeeEeeeccCC----CCccceEEEeCCC
Confidence            1       123556666  654 554444432 2  445666644   333    33444543    2578899999999


Q ss_pred             CEEEEEeCCCcEEEEECCC-----CeeEEEEcCCCCCCCCceEEEe--cCCC-EE-EEEECCCeEEEEEcCCC
Q 001310          591 DQILAAGDDHVIKIWDMNK-----VQLLTTIDAGGGLPENPRICFN--KNGT-LL-AVIANENRIKILETPES  654 (1103)
Q Consensus       591 ~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s--~~g~-~l-~~~~~dg~i~iw~~~~~  654 (1103)
                      ..|+.+-++..|..++.+.     +..+.......-...+-.++.-  +++. +| ++.-.+++..+|+....
T Consensus       192 ~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~  264 (353)
T d1h6la_         192 GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ  264 (353)
T ss_dssp             TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred             CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence            9999998887776666542     2223222221122345566644  2333 44 44445789999998764

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.85  E-value=1.7  Score=44.06  Aligned_cols=184  Identities=10%  Similarity=0.077  Sum_probs=108.1

Q ss_pred             CCCeeEEEEecCCCEEEEEcCCeEEEEEcCCc-----------eeeEEecCCCCCeeEEEEcCCCCCEEEEEeCCCeEEE
Q 001310          802 QEAVPCFALSKNDAYLFSASGGVISLYIVMTF-----------KTILTIMPPSPTATSLAFNPHDNNVIAIGMDDSTILI  870 (1103)
Q Consensus       802 ~~~v~~l~~s~d~~~l~~~~dg~i~iwd~~~~-----------~~~~~~~~~~~~i~~l~~s~~d~~~lasg~~dg~v~i  870 (1103)
                      .....-+++++...+++.++...+.|..+..-           ......  .-..|..++|+. +  .|++. .++.+..
T Consensus        36 ~~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~-d--~l~v~-~~~~l~~  109 (381)
T d1xipa_          36 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHG-D--QVLVS-TRNALYS  109 (381)
T ss_dssp             SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEET-T--EEEEE-ESSEEEE
T ss_pred             ccccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeC-C--EEEEE-eCCCEEE
Confidence            34566789999888888888777888775321           111111  123689999986 3  45544 3556777


Q ss_pred             EEcCCceeEEEeccCCCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCE
Q 001310          871 YNARSSEVISKLEGHSKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTR  950 (1103)
Q Consensus       871 wd~~~~~~~~~l~~h~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~  950 (1103)
                      ++..+-........-..++..+.++|.  .++....++.+.++++..++.....  .... .....+.+.+++|++.|+.
T Consensus       110 ~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~--~~v~-~~~~~~~~~~v~ws~kgkq  184 (381)
T d1xipa_         110 LDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLA--QNVT-SFDVTNSQLAVLLKDRSFQ  184 (381)
T ss_dssp             EESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEE--ESEE-EEEECSSEEEEEETTSCEE
T ss_pred             EEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCcccccc--CCcc-eEEecCCceEEEEeCCcEE
Confidence            877664333333334456788888775  5666778999999999987643211  0000 0011135788888888888


Q ss_pred             EEEEeCCeEEEE-ECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEe
Q 001310          951 FLLVHETHLAIY-EAEELTCLKQWFPISSVPISQATFSCDCRMVFTSF  997 (1103)
Q Consensus       951 l~~~~d~~v~iw-d~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~  997 (1103)
                      ++++..+...+- ++.....+.. .......|.+|.|..+..++++-+
T Consensus       185 ~v~~~g~~~q~k~~i~~~~~~~~-p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         185 SFAWRNGEMEKQFEFSLPSELEE-LPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             EEEEETTEEEEEEEECCCHHHHT-SCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             EEEeCCCceeeccCCCCccccCC-CcCCCcceeEEEEecCceEEEEEC
Confidence            887644433321 1111100000 011245788999988877777553

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=91.32  E-value=7.8  Score=38.52  Aligned_cols=191  Identities=12%  Similarity=0.055  Sum_probs=103.0

Q ss_pred             EEEEEECCCCCEEEEEeC------------CCeEEEEEecCCCccccceEeccc-----cccEEEEEE--ecCCCceEEE
Q 001310          399 VNRVVWSPDGSLLGVAYS------------KHIVQLYAYHGGSDARQQLEIDAH-----VGNVNDLAF--SAPCKQISVI  459 (1103)
Q Consensus       399 V~~~~~spdg~~las~~~------------d~~i~iwd~~~~~~~~~~~~l~~h-----~~~v~~~~~--s~d~~~~~l~  459 (1103)
                      .-.++..|||..+++++.            .|.|.++|+++.........+.+.     .-.-..+..  .+||+. .|+
T Consensus        37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~  115 (340)
T d1v04a_          37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLL  115 (340)
T ss_dssp             CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEE
T ss_pred             cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEE
Confidence            335788899988877642            488999998876432222222211     112233333  456664 344


Q ss_pred             EE---cCCCceEEEeCCCCce-e---EEeec-CCCceEEEEeeecCCccEEEEEEC---------------CCeEEEEEc
Q 001310          460 TC---GDDKTIKVWDAVTGSR-T---YSFEG-HGAPVYSLCPHAKENIHFIFSISV---------------DGKIKAWLY  516 (1103)
Q Consensus       460 s~---~~d~~i~iwd~~~~~~-~---~~~~~-~~~~v~~~~~~~~~~~~~l~s~~~---------------dg~i~iwd~  516 (1103)
                      ..   ....+|.+|++..... +   .++.. .....+++++.  +++.+++|-..               -+...+|..
T Consensus       116 vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~--~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~  193 (340)
T d1v04a_         116 VVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAV--GPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYY  193 (340)
T ss_dssp             EEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEE--ETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEE
T ss_pred             EEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEe--cCCCEEEecCccCcChhhhhhhHhhcCCceeEEEE
Confidence            43   3456788888764432 2   22222 12345677764  35566666311               123345555


Q ss_pred             CCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEEEecccccCCceEEEEEcCCCCEEEEE
Q 001310          517 DSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRTYQGLQLQHNSVSVVHFDTAKDQILAA  596 (1103)
Q Consensus       517 ~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~  596 (1103)
                      +......... .-...+.++++||+++|+++...   ...|+.|++............. -....-.+.+.+++..+.++
T Consensus       194 ~~~~~~~~~~-~l~~pNGI~~s~d~~~lyVa~t~---~~~i~~y~~~~~~~l~~~~~~~-l~~~pDNi~~d~~~g~lwva  268 (340)
T d1v04a_         194 SPNDVRVVAE-GFDFANGINISPDGKYVYIAELL---AHKIHVYEKHANWTLTPLRVLS-FDTLVDNISVDPVTGDLWVG  268 (340)
T ss_dssp             CSSCEEEEEE-EESSEEEEEECTTSSEEEEEEGG---GTEEEEEEECTTSCEEEEEEEE-CSSEEEEEEECTTTCCEEEE
T ss_pred             cCCceEEEcC-CCCccceeEECCCCCEEEEEeCC---CCeEEEEEeCCCcccceEEEec-CCCCCCccEEecCCCEEEEE
Confidence            5544433222 23457889999999999887653   4568888876443222221111 12456677777644444444


Q ss_pred             e
Q 001310          597 G  597 (1103)
Q Consensus       597 ~  597 (1103)
                      +
T Consensus       269 ~  269 (340)
T d1v04a_         269 C  269 (340)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.02  E-value=5.3  Score=38.55  Aligned_cols=187  Identities=12%  Similarity=0.032  Sum_probs=90.7

Q ss_pred             CCCEEEEEc-----C-----CeEEEEEcCCceeeEE--ecCCCCCeeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCC
Q 001310          813 NDAYLFSAS-----G-----GVISLYIVMTFKTILT--IMPPSPTATSLAFNPHDNNVIAIGMDDS-----TILIYNARS  875 (1103)
Q Consensus       813 d~~~l~~~~-----d-----g~i~iwd~~~~~~~~~--~~~~~~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~  875 (1103)
                      +++.++.|+     +     ..+.+||..+.+-...  +......-.+..+   ++++++.|+.++     ....++..+
T Consensus        50 ~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~~~---~~~i~~~gg~~~~~~~~~~~~~~~~~  126 (288)
T d1zgka1          50 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI---DGHIYAVGGSHGCIHHNSVERYEPER  126 (288)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE---TTEEEEECCEETTEECCCEEEEETTT
T ss_pred             CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecccc---ceeeEEecceecccccceeeeecccc
Confidence            566666654     1     3477888876544322  2111112222222   566666665544     345567666


Q ss_pred             ceeEEEecc--CCCCEEEEEEccCCCEEEEEeCC-----CeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCC
Q 001310          876 SEVISKLEG--HSKRVTGLVFSDALNILVSSGGD-----AQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQ  948 (1103)
Q Consensus       876 ~~~~~~l~~--h~~~V~~l~~s~dg~~l~s~s~d-----g~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg  948 (1103)
                      ......-..  .......+.  .+++.++.++.+     ..+..||...++...........       ...+++. .++
T Consensus       127 ~~~~~~~~~~~~r~~~~~~~--~~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-------~~~~~~~-~~~  196 (288)
T d1zgka1         127 DEWHLVAPMLTRRIGVGVAV--LNRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIR-------SGAGVCV-LHN  196 (288)
T ss_dssp             TEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCC-------BSCEEEE-ETT
T ss_pred             Cccccccccccccccceeee--eeecceEecCcccccccceEEEeecccccccccccccccc-------ccccccc-eee
Confidence            543221111  111111122  245566666553     34788888776543322111111       1112222 234


Q ss_pred             CEEEEE-eC-----CeEEEEECCCceEEEEeeCCCCcCeEEEEEccCCCEEEEEecCC-----cEEEEeCCCceeE
Q 001310          949 TRFLLV-HE-----THLAIYEAEELTCLKQWFPISSVPISQATFSCDCRMVFTSFVDG-----TLSIHEASNLEVQ 1013 (1103)
Q Consensus       949 ~~l~~~-~d-----~~v~iwd~~~~~~~~~~~~~h~~~v~~l~fs~dg~~l~t~~~dg-----~v~vWd~~~~~~~ 1013 (1103)
                      ++++.+ .+     .....+|..+.+.... ..........-+...++++++.|+.++     .|.+||+++.+..
T Consensus       197 ~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~-~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~  271 (288)
T d1zgka1         197 CIYAAGGYDGQDQLNSVERYDVETETWTFV-APMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWS  271 (288)
T ss_dssp             EEEEECCBCSSSBCCCEEEEETTTTEEEEC-CCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEE
T ss_pred             eEEEecCccccccccceeeeeecceeeecc-cCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEE
Confidence            444443 22     3578889887765542 111122222222234788888887554     3889999987643

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.74  E-value=5.3  Score=35.57  Aligned_cols=165  Identities=13%  Similarity=0.092  Sum_probs=98.7

Q ss_pred             EEEEEcCCceeeEEecCCC-CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE--EEeccC-------CCCEEEEEE
Q 001310          825 ISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLEGH-------SKRVTGLVF  894 (1103)
Q Consensus       825 i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~~h-------~~~V~~l~~  894 (1103)
                      |.+-++...-.-.++.... -.|.+++..  |.+.+.+|+......+|-++.|+..  ..+.+.       .+.|..+.|
T Consensus        84 i~~~Nlk~~GEE~~i~spk~vRI~S~~yd--dk~vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~  161 (313)
T d2hu7a1          84 LFKVNTSRPGEEQRLEAVKPMRILSGVDT--GEAVVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGF  161 (313)
T ss_dssp             EEEEETTSTTCEEECTTSCSBEEEEEEEC--SSCEEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEE
T ss_pred             EEEEccCCCCeeeEecCCceEEEEEeeec--CceEEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEee
Confidence            5555554222333444333 467777775  6788899998888999999988643  333322       122333322


Q ss_pred             -ccCCCEEEEEeC-CCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCCCCEEEEE----eCCeEEEEECCCce
Q 001310          895 -SDALNILVSSGG-DAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKDQTRFLLV----HETHLAIYEAEELT  968 (1103)
Q Consensus       895 -s~dg~~l~s~s~-dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~~~----~d~~v~iwd~~~~~  968 (1103)
                       .+..+-+.++.- .|.++|++...|                   .+.....+++.+. ++.    .+....-+|.++++
T Consensus       162 ~~g~~~sfF~adl~SG~lri~tpkeG-------------------S~~~ay~~~gnKV-~sdyEt~gEsywit~D~~s~~  221 (313)
T d2hu7a1         162 FGGGRVSLFTSNLSSGGLRVFDSGEG-------------------SFSSASISPGMKV-TAGLETAREARLVTVDPRDGS  221 (313)
T ss_dssp             EETTEEEEEEEETTTEEEEEECCSSE-------------------EEEEEEECTTSCE-EEEEEESSCEEEEEECTTTCC
T ss_pred             ecCCcceEEEEecccCCEEEecCCCC-------------------cccceeEccCcee-eeccCCCCceEEEEEecccCc
Confidence             222233444443 555555555442                   3666777777776 443    22333356888777


Q ss_pred             EEEEeeCCC------CcCeEEEEEccCCCEEEEEecCCcEEEEeCCCceeE
Q 001310          969 CLKQWFPIS------SVPISQATFSCDCRMVFTSFVDGTLSIHEASNLEVQ 1013 (1103)
Q Consensus       969 ~~~~~~~~h------~~~v~~l~fs~dg~~l~t~~~dg~v~vWd~~~~~~~ 1013 (1103)
                      .-..-+++.      ...|+-+-+.||++.++.+-.||.-++|.  +|+.+
T Consensus       222 yerve~P~kd~~sy~p~~I~~~~Y~Pdd~L~iiakrdG~s~lF~--nGk~i  270 (313)
T d2hu7a1         222 VEDLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFI--DGERV  270 (313)
T ss_dssp             EEECCCSSCHHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEE--TTEEE
T ss_pred             eeeeecCcccceeecceEEEeeeeCCCCcEEEEEecCCchheee--cceEe
Confidence            655444433      34455566899999989999999999986  45444

>d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: Taf5 N-terminal domain-like
superfamily: Taf5 N-terminal domain-like
family: Taf5 N-terminal domain-like
domain: TAF5 subunit of TFIID
species: Saccharomyces cerevisiae [TaxId: 4932]

Probab=90.49  E-value=0.036  Score=47.18  Aligned_cols=82  Identities=16%  Similarity=0.211  Sum_probs=57.5

Q ss_pred             ccccchhhhhhhhhhhhhhcCCCHHHHHHHHHhhccccCCCCHHHHHHHHhhcccccccchhccccccCC------ChHH
Q 001310           67 RYSTKIYFEIRKQNFFEALDGHDIAKALNILKKDLKDFAPGNEELFKELAQLLTLDDIRDHELLSKYYGD------ALSA  140 (1103)
Q Consensus        67 ~~~~~~~~~~~~q~~~Ell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~~~~~------~~~~  140 (1103)
                      ++.. ++|+++-+.|+||+.+|. .+|..++++.-..+.....+.+++|+.+.+..++.+.+....+...      .+.+
T Consensus        25 EL~~-lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s  102 (134)
T d2j49a1          25 ELSY-IMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT  102 (134)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred             HHHH-HHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHH
Confidence            3444 999999999999999875 6899999987666654456667778877777776665544443322      2555


Q ss_pred             HHHHHHHHHH
Q 001310          141 RKNMMLELKQ  150 (1103)
Q Consensus       141 r~~l~~~l~~  150 (1103)
                      -..|+..|++
T Consensus       103 ~~lLl~fL~~  112 (134)
T d2j49a1         103 LNLLLYFLNE  112 (134)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            6667777764

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=90.44  E-value=4.5  Score=42.35  Aligned_cols=53  Identities=21%  Similarity=0.303  Sum_probs=38.2

Q ss_pred             CCeeEEEEcCCCCCEEEEEeCCCeEEEEEcCCceeE--EEec------cCCCCEEEEEEccC
Q 001310          844 PTATSLAFNPHDNNVIAIGMDDSTILIYNARSSEVI--SKLE------GHSKRVTGLVFSDA  897 (1103)
Q Consensus       844 ~~i~~l~~s~~d~~~lasg~~dg~v~iwd~~~~~~~--~~l~------~h~~~V~~l~~s~d  897 (1103)
                      ...++|+|.| |++++++--..|.|++++..+++..  ..+.      .-.+....|+|+|+
T Consensus        27 ~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          27 NKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4678999999 8888887656799999988776532  2221      11346788999985

>d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Acylamino-acid-releasing enzyme, N-terminal donain
domain: Acylamino-acid-releasing enzyme, N-terminal donain
species: Aeropyrum pernix [TaxId: 56636]

Probab=90.08  E-value=6.1  Score=35.19  Aligned_cols=153  Identities=8%  Similarity=0.045  Sum_probs=85.5

Q ss_pred             cEEEEEEecCCCceEEEEEcCCCceEEEeCCCCceeE--EeecCCCceEEE--------EeeecCCccEEEEEEC-CCeE
Q 001310          443 NVNDLAFSAPCKQISVITCGDDKTIKVWDAVTGSRTY--SFEGHGAPVYSL--------CPHAKENIHFIFSISV-DGKI  511 (1103)
Q Consensus       443 ~v~~~~~s~d~~~~~l~s~~~d~~i~iwd~~~~~~~~--~~~~~~~~v~~~--------~~~~~~~~~~l~s~~~-dg~i  511 (1103)
                      +|.+++.  |++. .+++|+......+|-++.|+...  .+. .-+.|+++        .+. .++..-++++.. .|.+
T Consensus       105 RI~S~~y--ddk~-vvF~Gased~~~LYviegGklrkL~~vP-pFsFVtDI~~d~I~G~g~~-~g~~~sfF~adl~SG~l  179 (313)
T d2hu7a1         105 RILSGVD--TGEA-VVFTGATEDRVALYALDGGGLRELARLP-GFGFVSDIRGDLIAGLGFF-GGGRVSLFTSNLSSGGL  179 (313)
T ss_dssp             EEEEEEE--CSSC-EEEEEECSSCEEEEEEETTEEEEEEEES-SCEEEEEEETTEEEEEEEE-ETTEEEEEEEETTTEEE
T ss_pred             EEEEeee--cCce-EEEecccCCceEEEEEeCCceeeeccCC-CcceEEeccCCeEEEEeee-cCCcceEEEEecccCCE
Confidence            4555554  5665 66777777778888888876532  222 12233333        221 112222333333 5555


Q ss_pred             EEEEcCCCCeeEEecCCCccEEEEEEccCCCEEEEEecCCCCceeEEEEeCCCCeeEEE-Eeccc---ccCCceEEEEEc
Q 001310          512 KAWLYDSLGARVDYDAPGLGCTRMAYSANGRRLFSCGTSKEGESFLVEWNESEGAIKRT-YQGLQ---LQHNSVSVVHFD  587 (1103)
Q Consensus       512 ~iwd~~~~~~~~~~~~~~~~i~~~~~s~dg~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~---~~~~~v~~~~~~  587 (1103)
                      ++++           ...+.++....+++.+. ++...+- ++....-+|+++++..+. +....   ...-.|.-+-+.
T Consensus       180 ri~t-----------pkeGS~~~ay~~~gnKV-~sdyEt~-gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~  246 (313)
T d2hu7a1         180 RVFD-----------SGEGSFSSASISPGMKV-TAGLETA-REARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYL  246 (313)
T ss_dssp             EEEC-----------CSSEEEEEEEECTTSCE-EEEEEES-SCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEEC
T ss_pred             EEec-----------CCCCcccceeEccCcee-eeccCCC-CceEEEEEecccCceeeeecCcccceeecceEEEeeeeC
Confidence            5553           34456666666666665 4444332 244444669887765432 11111   012345666689


Q ss_pred             CCCCEEEEEeCCCcEEEEECCCCeeEEE
Q 001310          588 TAKDQILAAGDDHVIKIWDMNKVQLLTT  615 (1103)
Q Consensus       588 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~  615 (1103)
                      |+++.++.+-.||.-++|.  +|+.+..
T Consensus       247 Pdd~L~iiakrdG~s~lF~--nGk~in~  272 (313)
T d2hu7a1         247 PDGRLAVVARREGRSAVFI--DGERVEA  272 (313)
T ss_dssp             TTSCEEEEEEETTEEEEEE--TTEEECC
T ss_pred             CCCcEEEEEecCCchheee--cceEecC
Confidence            9999989999999999887  5665543

>d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Kelch motif
family: Kelch motif
domain: Kelch-like ECH-associated protein 1, KEAP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.96  E-value=8.8  Score=36.84  Aligned_cols=108  Identities=13%  Similarity=0.045  Sum_probs=56.6

Q ss_pred             CCCEEEEEc-C-----CeEEEEEcCCceeeEEecCCC-CCeeEEEEcCCCCCEEEEEeCCC-----eEEEEEcCCceeEE
Q 001310          813 NDAYLFSAS-G-----GVISLYIVMTFKTILTIMPPS-PTATSLAFNPHDNNVIAIGMDDS-----TILIYNARSSEVIS  880 (1103)
Q Consensus       813 d~~~l~~~~-d-----g~i~iwd~~~~~~~~~~~~~~-~~i~~l~~s~~d~~~lasg~~dg-----~v~iwd~~~~~~~~  880 (1103)
                      +++.++.++ +     ..+..||..+.+....-.... ....+.+..  ++++++.|+.++     ....+|..+.+...
T Consensus       148 ~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~  225 (288)
T d1zgka1         148 NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTF  225 (288)
T ss_dssp             TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEE
T ss_pred             eecceEecCcccccccceEEEeeccccccccccccccccccccccce--eeeEEEecCccccccccceeeeeecceeeec
Confidence            445555553 1     447888887665432221111 122233333  456777766553     66778877765332


Q ss_pred             EeccCCCCEEEEEEccCCCEEEEEeCCC-----eEEEEEcCCCceee
Q 001310          881 KLEGHSKRVTGLVFSDALNILVSSGGDA-----QIFVWDVDGWGIQT  922 (1103)
Q Consensus       881 ~l~~h~~~V~~l~~s~dg~~l~s~s~dg-----~I~iwd~~~~~~~~  922 (1103)
                      .-.........-+...++++++.|+.++     .|.+||+.+++-..
T Consensus       226 ~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~W~~  272 (288)
T d1zgka1         226 VAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDTWSE  272 (288)
T ss_dssp             CCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTEEEE
T ss_pred             ccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCEEEE
Confidence            2111111111112223678888887654     37899999876444

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=88.18  E-value=4.9  Score=42.03  Aligned_cols=113  Identities=10%  Similarity=0.077  Sum_probs=63.9

Q ss_pred             CCCEEEEEEccCCCEEEEEeCCCeEEEEEcCCCceeeeeeeecCCCcccCCCCceEEEEcCC---CCEEEEE---e----
Q 001310          886 SKRVTGLVFSDALNILVSSGGDAQIFVWDVDGWGIQTCRSLQTPDGVMTLAPSETHIQFHKD---QTRFLLV---H----  955 (1103)
Q Consensus       886 ~~~V~~l~~s~dg~~l~s~s~dg~I~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~d---g~~l~~~---~----  955 (1103)
                      -...++|+|.|||++|++--..|.|++++..+++......+..........+....++|+|+   ..++.++   .    
T Consensus        26 L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~~  105 (450)
T d1crua_          26 LNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKS  105 (450)
T ss_dssp             CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC
T ss_pred             CCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCCC
Confidence            35678999999999988765579999999888765443222211111111236788999986   3444432   1    


Q ss_pred             -C----Ce--EEEEECCCc-------eEE-EEeeCCCCcCeEEEEEccCCCEEEEEec
Q 001310          956 -E----TH--LAIYEAEEL-------TCL-KQWFPISSVPISQATFSCDCRMVFTSFV  998 (1103)
Q Consensus       956 -d----~~--v~iwd~~~~-------~~~-~~~~~~h~~~v~~l~fs~dg~~l~t~~~  998 (1103)
                       +    +.  +..+.....       +.+ .............|.|.|||.+.++.+.
T Consensus       106 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~Gd  163 (450)
T d1crua_         106 TDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (450)
T ss_dssp             --CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             cccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEecC
Confidence             0    11  223332211       111 1111111224578999999988777664