Citrus Sinensis ID: 001319
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1101 | 2.2.26 [Sep-21-2011] | |||||||
| Q84JM4 | 1108 | Topless-related protein 3 | yes | no | 0.985 | 0.979 | 0.761 | 0.0 | |
| Q9LRZ0 | 1131 | Topless-related protein 2 | no | no | 0.969 | 0.943 | 0.727 | 0.0 | |
| Q94AI7 | 1131 | Protein TOPLESS OS=Arabid | no | no | 0.992 | 0.966 | 0.625 | 0.0 | |
| Q0WV90 | 1120 | Topless-related protein 1 | no | no | 0.990 | 0.973 | 0.628 | 0.0 | |
| Q27GK7 | 1135 | Topless-related protein 4 | no | no | 0.971 | 0.942 | 0.613 | 0.0 | |
| Q8YTC2 | 1258 | Uncharacterized WD repeat | no | no | 0.454 | 0.397 | 0.214 | 2e-12 | |
| Q00808 | 1356 | Vegetative incompatibilit | no | no | 0.269 | 0.219 | 0.262 | 4e-12 | |
| Q8YV57 | 1683 | Uncharacterized WD repeat | no | no | 0.394 | 0.257 | 0.223 | 2e-11 | |
| Q93847 | 395 | Uncharacterized WD repeat | yes | no | 0.180 | 0.503 | 0.25 | 3e-11 | |
| Q9V3J8 | 361 | Protein will die slowly O | yes | no | 0.175 | 0.534 | 0.272 | 5e-10 |
| >sp|Q84JM4|TPR3_ARATH Topless-related protein 3 OS=Arabidopsis thaliana GN=TPR3 PE=1 SV=1 | Back alignment and function desciption |
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Score = 1751 bits (4534), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 856/1124 (76%), Positives = 962/1124 (85%), Gaps = 39/1124 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGFFFN KYF+EKV AG+WD+VE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFFFNTKYFDEKVLAGEWDDVETYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQ+KAKAV+ILV DL+VFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQEKAKAVEILVQDLRVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTKTARGIML ELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LQNFRENEQLSKYGDTKTARGIMLGELKKLIEANPLFRDKLMFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+ PNGPLAP+ VN PV + KPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTLPNGPLAPSAVNQPVTTLTKPAAYPSLGPHVPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
AAANA ALA WMA AS +S+VQAAVVT + +P PQNQ+S+LK PRTPP TPG+VDYQN
Sbjct: 241 GPAAANAGALASWMAAASGASAVQAAVVTPALMPQPQNQMSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT-WSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHE LMKRLRPAPS EEVTY + R Q WSL+DLP A++LHQGSTV SM+F+P T
Sbjct: 301 PDHE-LMKRLRPAPSVEEVTYPAPRQQAPWSLEDLPTKAALALHQGSTVTSMEFYPMQNT 359
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+ GEITLWELA R+RLVS+PFKIWDM+ CS FQA I K+ PISV+RVAWSPDG
Sbjct: 360 LLLVGSATGEITLWELAARERLVSRPFKIWDMSNCSHQFQALIAKETPISVTRVAWSPDG 419
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
N++GVAFTKHLIQLY+++G NDLRQH++IDAHVGAVNDLAFA PN+ LCV+TCGDDKLIK
Sbjct: 420 NFIGVAFTKHLIQLYAFSGPNDLRQHTEIDAHVGAVNDLAFANPNRQLCVITCGDDKLIK 479
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++SGRK F FEGH+APVYSICPH+KENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 480 VWDVSGRKHFTFEGHDAPVYSICPHYKENIQFIFSTAIDGKIKAWLYDNLGSRVDYDAPG 539
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCT MLYSADG+RLFSCGTSKDGDSFLVEWNESEG+IKRTY F+KK GVVQFDT++N
Sbjct: 540 KWCTRMLYSADGTRLFSCGTSKDGDSFLVEWNESEGSIKRTYKEFQKKLAGVVQFDTSKN 599
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGED QIKFWDM+N+N+LTSTDAEGGLP LP LRF+K+GNLLAVTTADNGFKILAN
Sbjct: 600 HFLAVGEDGQIKFWDMNNINVLTSTDAEGGLPALPHLRFNKDGNLLAVTTADNGFKILAN 659
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII--- 715
G RSLRA+E P E +RTP++ A+ + ++V NCKVER SPVR S ++
Sbjct: 660 PAGFRSLRAMETPASETMRTPVDFKAVPGAPVASV------NCKVERGSPVRHSQMLNGV 713
Query: 716 ------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 757
LAEI+D QC T+P++ +S+KVV+LLYTNS G+LALGS
Sbjct: 714 DPSKSRIDDSTDKPKSWQLAEILDPSQCFQATLPDTAGSSTKVVQLLYTNSGAGILALGS 773
Query: 758 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817
NG+Q+LWKW NEQNPSGKATA+ VPQHW P+SGLLM NDV+GVNLE A PCIALSKNDS
Sbjct: 774 NGIQRLWKWVPNEQNPSGKATATVVPQHWQPNSGLLMTNDVSGVNLENAAPCIALSKNDS 833
Query: 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877
YVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNN+IAIG EDSTIHIYNVRV
Sbjct: 834 YVMSAAGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNVIAIGMEDSTIHIYNVRV 893
Query: 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 937
DEVKSKLKGHQKRITGLAFST+LNILVSSGADAQ+C WSIDTWEKRKSV I +PAGK
Sbjct: 894 DEVKSKLKGHQKRITGLAFSTALNILVSSGADAQICFWSIDTWEKRKSVAIQMPAGKAAN 953
Query: 938 GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFA 997
GDTRVQF+ DQ+R+LVVHETQLA++DASKME IRQW PQD+LSAPIS AVY+CNSQL++
Sbjct: 954 GDTRVQFHVDQLRILVVHETQLAVFDASKMECIRQWIPQDSLSAPISSAVYACNSQLIYT 1013
Query: 998 TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG 1057
TF DGNIGVFDAD+LRLRC I+PS YL G+Q + PLVVAAHP +PNQFA+GL DG
Sbjct: 1014 TFRDGNIGVFDADSLRLRCRISPSAYLP----QGNQGLSPLVVAAHPQDPNQFAVGLNDG 1069
Query: 1058 SVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHTPDQLQR 1101
SVK+MEP+E EGKWG+ PP + +NS S+TSN TP+QLQR
Sbjct: 1070 SVKMMEPTEGEGKWGMIPPSE--AINS---PSTTSNQTPEQLQR 1108
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LRZ0|TPR2_ARATH Topless-related protein 2 OS=Arabidopsis thaliana GN=TPR2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1645 bits (4261), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 804/1105 (72%), Positives = 909/1105 (82%), Gaps = 38/1105 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTAAAANANA-LAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDY 297
A A LAGWMAN + SSSV + VV AS P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + S+ +KVS S+ SS +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKA---SIDMKVSTSAMASSISPAIGKIEHMDAGSPARPTPI 716
Query: 715 I--------------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS 748
L EIVD QCR VTMP+S D+ SKV RLLYTNS
Sbjct: 717 PNGIEAMSRTMEKPRNLDSVDKSKPLELTEIVDPTQCRQVTMPDSKDSVSKVARLLYTNS 776
Query: 749 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVP 808
VG+LALGSNGVQ+LWKW RNEQNP+GKATAS PQHW P+SGLLMANDV N E +VP
Sbjct: 777 GVGVLALGSNGVQRLWKWIRNEQNPTGKATASVTPQHWQPNSGLLMANDVPE-NPEGSVP 835
Query: 809 CIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 868
CIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDS
Sbjct: 836 CIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDS 895
Query: 869 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928
+IHIYNVRVDEVK+KLKGHQK ITGLAFST+LNILVSSGADAQL W+ D+WEK+KS I
Sbjct: 896 SIHIYNVRVDEVKTKLKGHQKHITGLAFSTALNILVSSGADAQLFFWTADSWEKKKSSAI 955
Query: 929 HIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVY 988
+P GK P GDTRVQF+ DQ+++LV HETQLAIYDASKME I +W PQ+ALS+PI+ A Y
Sbjct: 956 QLPPGKAPVGDTRVQFHNDQIQLLVSHETQLAIYDASKMECIHKWVPQEALSSPITSASY 1015
Query: 989 SCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1048
SCNSQLV+A+F DGNI VFDA++LRLRC IAPS Y+ P S ++P V+ AHP EPN
Sbjct: 1016 SCNSQLVYASFADGNIAVFDAESLRLRCRIAPSAYM-PQPTPNSAPIFPQVITAHPQEPN 1074
Query: 1049 QFAIGLTDGSVKVMEPSESEGKWGV 1073
Q A+GL+DGSVKV+EPSE +WGV
Sbjct: 1075 QLAVGLSDGSVKVIEPSELSRRWGV 1099
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Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q94AI7|TPL_ARATH Protein TOPLESS OS=Arabidopsis thaliana GN=TPL PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1435 bits (3714), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 712/1139 (62%), Positives = 860/1139 (75%), Gaps = 46/1139 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLP-VAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P + + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PTA+ LAGWM S+ SSV V+A +I + + + LKHPRTPPT +DY
Sbjct: 241 PTASPV-PTPLAGWM---SSPSSVPHPAVSAGAIALGGPSIPAALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ +G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV--ALKVSASSAVSSGTPANC- 701
AV+ +N KI+AN+ GLR L EN E+ + I S+ A +A+SA + AN
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAINSIAAAAAAAATSAGHADRSANVV 716
Query: 702 -----KVERSSPVRPSPII------------LAEIVDSGQCRLVTMPESTDTSSKVVRLL 744
+ + V P+I L E+ + QCR + +PE+ +K+ RL+
Sbjct: 717 SIQGMNGDSRNMVDVKPVITEESNDKSKIWKLTEVSEPSQCRSLRLPENLRV-AKISRLI 775
Query: 745 YTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLE 804
+TNS +LAL SN + LWKW RNE+N +GKATAS PQ W P+SG+LM NDVA N E
Sbjct: 776 FTNSGNAILALASNAIHLLWKWQRNERNATGKATASLPPQQWQPASGILMTNDVAETNPE 835
Query: 805 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 864
EAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHPQDNNIIAIG
Sbjct: 836 EAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIG 895
Query: 865 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 924
+DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW+ D WEK++
Sbjct: 896 MDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQR 955
Query: 925 SVTIHIPAGK--TPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP 982
S + +P G+ + DTRVQF+ DQ LVVHETQLAIY+ +K+E ++QW +++L AP
Sbjct: 956 SKVLPLPQGRPNSAPSDTRVQFHQDQAHFLVVHETQLAIYETTKLECMKQWAVRESL-AP 1014
Query: 983 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1042
I+ A +SC+SQLV+A+F D + VF + LRLRC + PS YL S+ N + V+PLV+AA
Sbjct: 1015 ITHATFSCDSQLVYASFMDATVCVFSSANLRLRCRVNPSAYLPASLSNSN--VHPLVIAA 1072
Query: 1043 HPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHTPDQLQR 1101
HP EPN FA+GL+DG V + EP ESEGKWGV+PP +NG + T+ S DQ QR
Sbjct: 1073 HPQEPNMFAVGLSDGGVHIFEPLESEGKWGVAPPAENGSASGAPTAPSVGASASDQPQR 1131
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Transcriptional corepressor. May repress the expression of root-promoting genes in the top half of the embryo to allow proper differentiation of the shoot pole during the transition stage of embryogenesis. Regulates the expression of PLT1 and PLT2. Negative regulator of jasmonate responses. Negative regulator of auxin responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q0WV90|TPR1_ARATH Topless-related protein 1 OS=Arabidopsis thaliana GN=TPR1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1433 bits (3710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 711/1131 (62%), Positives = 855/1131 (75%), Gaps = 41/1131 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRTSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLP-VAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PN AP+PVN P + ++ K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCRLPNDARAPSPVNNPLLGSLPKAEGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQV-SVLKHPRTPPTPGMVDYQ 298
PT + LAGWM S+ SSV V+ I + + + LKHPRTPP+ VDY
Sbjct: 241 PTPSPV-PTPLAGWM---SSPSSVPHPAVSGGPIALGAPSIQAALKHPRTPPSNSAVDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH---QTWSL-DDLPRTVAVSLHQGS 345
+ D + + KR RP ++EV T+ H QT+ DDLP+TVA +L QGS
Sbjct: 297 SGDSDHVSKRTRPMGISDEVSLGVNMLPMTFPGQAHGHNQTFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND+AF+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV TCGDDK IKVW+ +G K + FEGHEAPVYSICPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVTTCGDDKTIKVWDAATGVKRYTFEGHEAPVYSICPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDY+APG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYEAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD + +LT+ DA+GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDTIQLLTAIDADGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704
AV+ DN K++AN+ GLR L VEN E+ + I S+ + +S VS P
Sbjct: 657 AVSANDNMIKVMANSDGLRLLHTVENLSSESSKPAINSIPMVERPASVVS--IPGMNGDS 714
Query: 705 RSSPVRPSPII------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 752
R+ V P+I L E+ + QCR + +PE+ +K+ RL++TNS +
Sbjct: 715 RNM-VDVKPVITEESNDKSKVWKLTEVGEPSQCRSLRLPENMRV-TKISRLIFTNSGNAI 772
Query: 753 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 812
LAL SN + LWKW RN++N +GKATAS PQ W P+SG+LM NDVA N EEAVPC AL
Sbjct: 773 LALASNAIHLLWKWQRNDRNATGKATASLPPQQWQPASGILMTNDVAETNPEEAVPCFAL 832
Query: 813 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872
SKNDSYVMSA+GGKISLFNMMTFK M TFM PPPA+TFLAFHPQDNNIIAIG +DSTI I
Sbjct: 833 SKNDSYVMSASGGKISLFNMMTFKTMATFMPPPPAATFLAFHPQDNNIIAIGMDDSTIQI 892
Query: 873 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 932
YNVRVDEVKSKLKGH KRITGLAFS LN+LVSSGADAQLCVW+ D WEK+KS + IP
Sbjct: 893 YNVRVDEVKSKLKGHSKRITGLAFSNVLNVLVSSGADAQLCVWNTDGWEKQKSKVLQIPQ 952
Query: 933 GKTPT--GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 990
G++ + DTRVQF+ DQV LVVHETQLAIY+ +K+E ++QW P +API+ A +SC
Sbjct: 953 GRSTSSLSDTRVQFHQDQVHFLVVHETQLAIYETTKLECMKQW-PVRESAAPITHATFSC 1011
Query: 991 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050
+SQL++ +F D I VF + LRLRC + PS YL S+ N + V+PLV+AAHP E N F
Sbjct: 1012 DSQLIYTSFMDATICVFSSANLRLRCRVNPSAYLPASLSNSN--VHPLVIAAHPQESNMF 1069
Query: 1051 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHTPDQLQR 1101
A+GL+DG V + EP ESEGKWGV+PP +NG ++ T + S DQ QR
Sbjct: 1070 AVGLSDGGVHIFEPLESEGKWGVAPPPENGSASAVTATPSVGASASDQPQR 1120
|
Transcriptional corepressor. Activates TIR-NB-LRR R protein-mediated immune responses through repression of negative regulators such as CNGC2/DND1. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q27GK7|TPR4_ARATH Topless-related protein 4 OS=Arabidopsis thaliana GN=TPR4 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1378 bits (3567), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 693/1129 (61%), Positives = 841/1129 (74%), Gaps = 59/1129 (5%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFK++VH+LEKESGFFFNM+YFE+ V AG+WD+VEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKDTVHRLEKESGFFFNMRYFEDSVTAGEWDDVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD++D AKAVDILV +LKVFSTFNEELFKEIT LLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKKDHAKAVDILVKELKVFSTFNEELFKEITMLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK+ARGIML ELKKLIEANPLFRDKL FP+LK+SRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKSARGIMLGELKKLIEANPLFRDKLQFPSLKNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTP-VNLPVAAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DHTC PNG P+P N + +V K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHTCGHPNGAHTPSPTTNHLMGSVPKVGGFPPLGAHGPFQ 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPV--PQNQVSVLK--HPRTPPTPGM- 294
PT A +LAGWM N SVQ V+A I + P + VS+LK PR+PPT +
Sbjct: 241 PTPAPL-TTSLAGWMPNP----SVQHPTVSAGPIGLGAPNSAVSMLKRERPRSPPTNSLS 295
Query: 295 VDYQNPDHEQLMKRLRPAPSAE----------EVTY--SSSRHQTWSLDDLPRTVAVSLH 342
+DYQ D E ++KR RP ++ VTY S H T+S DDLP+ V+ L
Sbjct: 296 MDYQTADSESVLKRPRPFGISDGVNNLPVNVLPVTYPGQSHAHATYSTDDLPKNVSRILS 355
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402
QGS + SMDFHP QT+LLVG++ G+I +WE+ R++LVS+ FK+WD+A C++ QAS+
Sbjct: 356 QGSAIKSMDFHPVQQTMLLVGTNLGDIAIWEVGSREKLVSRSFKVWDLATCTVNLQASLA 415
Query: 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP 462
+ +V+RV WSPDG +GVA++KH++ +YSY G DLR H +IDAH G VNDLAF+ P
Sbjct: 416 SEYTAAVNRVVWSPDGGLLGVAYSKHIVHIYSYHGGEDLRNHLEIDAHAGNVNDLAFSQP 475
Query: 463 NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIK 521
N+ LCVVTCG+DK IKVW+ ++G KL FEGHEAPVYS+CPH KENIQFIFSTA+DGKIK
Sbjct: 476 NQQLCVVTCGEDKTIKVWDAVTGNKLHTFEGHEAPVYSVCPHQKENIQFIFSTAVDGKIK 535
Query: 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581
AWLYD MGSRVDYDAPG CT+M Y ADG+RLFSCGTSK+G+SF+VEWNESEG +KRTY
Sbjct: 536 AWLYDNMGSRVDYDAPGRSCTSMAYCADGTRLFSCGTSKEGESFIVEWNESEGAVKRTYL 595
Query: 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641
G K+S GVVQFDT +N FL G++ Q+KFWDMD+V++L+ST AEGGLP+ P LR +KEG
Sbjct: 596 GLGKRSVGVVQFDTMKNKFLVAGDEFQVKFWDMDSVDLLSSTAAEGGLPSSPCLRINKEG 655
Query: 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK--VSASSAVSSGTPA 699
LLAV+T DNG KILANA G R L ++ N ++ R P SVA V +S T
Sbjct: 656 TLLAVSTTDNGIKILANAEGSRILHSMANRGLDSSRAPPGSVAKGPIVGTFGTPNSSTGM 715
Query: 700 NCKV-ERSSPV----------RPSPII---------------LAEIVDSGQCRLVTMPES 733
+ + ERS PV R P + L EI + Q R + +P+
Sbjct: 716 SLSMGERSGPVASVTGLNGDNRSLPDVKPRIADDAEKSKTWKLTEISERSQLRTLRLPD- 774
Query: 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793
T ++VV+L+YTNS +LAL N KLWKW ++E+N GKA ++ PQ W PSSG+L
Sbjct: 775 TLLPARVVKLIYTNSGGAILALAENAAHKLWKWQKSERNLLGKANSNVPPQLWQPSSGVL 834
Query: 794 MANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAF 853
M ND N E+ VPC ALSKNDSYVMSA+GGKISLFNMMTFK MTTFM+PPPA+T LAF
Sbjct: 835 MTNDTREGNKEDVVPCFALSKNDSYVMSASGGKISLFNMMTFKTMTTFMAPPPAATSLAF 894
Query: 854 HPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLC 913
HPQDNNIIAIG +DS+I IYNVRVDEVKSKLKGHQKR+TGLAFS LN+LVSSGAD+QLC
Sbjct: 895 HPQDNNIIAIGMDDSSIQIYNVRVDEVKSKLKGHQKRVTGLAFSNVLNVLVSSGADSQLC 954
Query: 914 VWSIDTWEKRKSVTIHIPAGKTPT--GDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 971
VWS+D WEK+ S I IP+G +P TRVQF+ DQ+ +LVVH +QLAIY+A K+E ++
Sbjct: 955 VWSMDGWEKQASKQIQIPSGHSPNPLAHTRVQFHQDQIHVLVVHASQLAIYEAPKLENMK 1014
Query: 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1031
QW P+++ S ++ AVYSC+SQ ++A F DG++ + A TL+L+C I P++YL PS N
Sbjct: 1015 QWIPKES-SGSVTDAVYSCDSQSIYAAFDDGSVSILTATTLQLKCRIGPNSYL-PS--NP 1070
Query: 1032 SQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNG 1080
S VYP VAAHP EPNQFA+GLTDG V V+EP EGKWG+S P +NG
Sbjct: 1071 SSRVYPATVAAHPSEPNQFAVGLTDGGVHVIEPPGPEGKWGISAPPENG 1119
|
Transcriptional corepressor. Negative regulator of jasmonate responses. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8YTC2|Y2800_NOSS1 Uncharacterized WD repeat-containing protein alr2800 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=alr2800 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 130/605 (21%), Positives = 231/605 (38%), Gaps = 105/605 (17%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
WS+ D ++ H+ V S+ FHP +TL S++G+ K K+
Sbjct: 711 WSVRDGVCIKTLTGHE-HEVFSVAFHPDGETL---ASASGD--------------KTIKL 752
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
WD+ + + D V VA+SPDGN + + H I+L+ + LR +
Sbjct: 753 WDIQDGTCLQTLTGHTDW---VRCVAFSPDGNTLASSAADHTIKLWDVSQGKCLR---TL 806
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKE 506
+H G V +AF+ + L + D+ IK+W +G L + GH VYSI +
Sbjct: 807 KSHTGWVRSVAFSADGQTL--ASGSGDRTIKIWNYHTGECLKTYIGHTNSVYSIA--YSP 862
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG---- 562
+ + + S + D IK W D H C L+ + + S S DG
Sbjct: 863 DSKILVSGSGDRTIKLW-----------DCQTHICIKTLH-GHTNEVCSVAFSPDGQTLA 910
Query: 563 ----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618
D + WN G + + G + V F + + D +K WD
Sbjct: 911 CVSLDQSVRLWNCRTGQCLKAWYGNTDWALPVA-FSPDRQILASGSNDKTVKLWDWQTGK 969
Query: 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678
++S EG + + FS + LA + D+ ++ + G F+ L
Sbjct: 970 YISSL--EGHTDFIYGIAFSPDSQTLASASTDSSVRLWNISTG---------QCFQILLE 1018
Query: 679 PIESV-ALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTS 737
+ V A+ + + A+C V+ + + +GQC L T+ E +D
Sbjct: 1019 HTDWVYAVVFHPQGKIIATGSADCTVKLWN------------ISTGQC-LKTLSEHSD-- 1063
Query: 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 797
K++ + ++ L + ++ +LW T V G+L +
Sbjct: 1064 -KILGMAWSPDGQLLASASADQSVRLWD----------CCTGRCV--------GILRGH- 1103
Query: 798 VAGVNLEEAVPCIALSKNDSYVMS-ATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 856
V S N + + +T + +++ K + T +AF P
Sbjct: 1104 ------SNRVYSAIFSPNGEIIATCSTDQTVKIWDWQQGKCLKTLTGHTNWVFDIAFSP- 1156
Query: 857 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916
D I+A + D T+ I++V + GH ++ +AFS ++ S D + +W+
Sbjct: 1157 DGKILASASHDQTVRIWDVNTGKCHHICIGHTHLVSSVAFSPDGEVVASGSQDQTVRIWN 1216
Query: 917 IDTWE 921
+ T E
Sbjct: 1217 VKTGE 1221
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/350 (26%), Positives = 140/350 (40%), Gaps = 53/350 (15%)
Query: 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM----------------------RDRL 380
GS+V+S+ F Q + GS + I +W+ A R+R+
Sbjct: 840 HGSSVLSVAFSADGQRVA-SGSDDKTIKIWDTASGTGTQTLEGHGGSVWSVAFSPDRERV 898
Query: 381 VS----KPFKIWDMAA--CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYS 434
S K KIWD A+ C+ + + V VA+SPDG V H I+++
Sbjct: 899 ASGSDDKTIKIWDAASGTCTQTLEGHGGR-----VQSVAFSPDGQRVASGSDDHTIKIWD 953
Query: 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGH 493
A S Q ++ H +V +AF+ + V + DK IK+W+ SG EGH
Sbjct: 954 -AASGTCTQ--TLEGHGSSVLSVAFSPDGQR--VASGSGDKTIKIWDTASGTCTQTLEGH 1008
Query: 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGS 551
V+S+ + Q + S + D IK W DT GH W ++++S DG
Sbjct: 1009 GGSVWSVA--FSPDGQRVASGSDDKTIKIW--DTASGTCTQTLEGHGGWVQSVVFSPDGQ 1064
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
R+ S D + W+ GT +T G S V F + D IK
Sbjct: 1065 RV----ASGSDDHTIKIWDAVSGTCTQTLEG-HGDSVWSVAFSPDGQRVASGSIDGTIKI 1119
Query: 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661
WD + + + GG + + FS +G +A + D KI A G
Sbjct: 1120 WDAASGTCTQTLEGHGGW--VHSVAFSPDGQRVASGSIDGTIKIWDAASG 1167
|
Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c. Podospora anserina (taxid: 5145) |
| >sp|Q8YV57|Y2124_NOSS1 Uncharacterized WD repeat-containing protein all2124 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=all2124 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 111/497 (22%), Positives = 194/497 (39%), Gaps = 63/497 (12%)
Query: 440 DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499
++++ ++++ H V ++ + + + + DK IK+W GR GHE VYS
Sbjct: 1061 EMQERNRLEGHKDGVISISISRDGQ--TIASGSLDKTIKLWSRDGRLFRTLNGHEDAVYS 1118
Query: 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT--MLYSADGSRLFSCG 557
+ + Q I S D IK W T + GH T + +S DG L S
Sbjct: 1119 VS--FSPDGQTIASGGSDKTIKLW--QTSDGTLLKTITGHEQTVNNVYFSPDGKNLASAS 1174
Query: 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMD 615
+ D + W+ + G + T G S GV V+F A ED +K W
Sbjct: 1175 S----DHSIKLWDTTSGQLLMTLTG---HSAGVITVRFSPDGQTIAAGSEDKTVKLWHRQ 1227
Query: 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI--LANAIGLRSLR----AVE 669
+ +L + + N L FS +G LA +AD K+ +A+ +++L+ +V
Sbjct: 1228 DGKLLKTLNGHQDWVN--SLSFSPDGKTLASASADKTIKLWRIADGKLVKTLKGHNDSVW 1285
Query: 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR-----PSPIILAEIVDSGQ 724
+ F + I S + + G S V P I+A
Sbjct: 1286 DVNFSSDGKAIASASRDNTIKLWNRHGIELETFTGHSGGVYAVNFLPDSNIIASASLDNT 1345
Query: 725 CRLVTMP-----ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 779
RL P E +S V + + + + G++G +LW + Q+ S T
Sbjct: 1346 IRLWQRPLISPLEVLAGNSGVYAVSFLHDGSIIATAGADGNIQLW----HSQDGSLLKT- 1400
Query: 780 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK-ISLFNMMTFKVM 838
LP + +A+ I+ + + SA K + ++ + K +
Sbjct: 1401 -------LPGN--------------KAIYGISFTPQGDLIASANADKTVKIWRVRDGKAL 1439
Query: 839 TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 898
T + + F P D +A + D+T+ ++NV + K LKGH + ++FS
Sbjct: 1440 KTLIGHDNEVNKVNFSP-DGKTLASASRDNTVKLWNVSDGKFKKTLKGHTDEVFWVSFSP 1498
Query: 899 SLNILVSSGADAQLCVW 915
I+ S+ AD + +W
Sbjct: 1499 DGKIIASASADKTIRLW 1515
|
Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690) |
| >sp|Q93847|YZLL_CAEEL Uncharacterized WD repeat-containing protein K04G11.4 OS=Caenorhabditis elegans GN=K04G11.4 PE=4 SV=1 | Back alignment and function description |
|---|
Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 98/216 (45%), Gaps = 17/216 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S + +SPDG Y+G I+++ D + H +N+ +++ +KL
Sbjct: 109 SISGIKFSPDGRYMGSGSADCSIKIWRM----DFVYEKTLMGHRLGINEFSWSSDSKL-- 162
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+V+C DDKL+KV+++ SGR + +GH V+ C + I S + D I+ W
Sbjct: 163 IVSCSDDKLVKVFDVSSGRCVKTLKGHTNYVFCCC--FNPSGTLIASGSFDETIRIWC-- 218
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ PGH +++ ++ DG+ L S D + W+ + GT +T
Sbjct: 219 ARNGNTIFSIPGHEDPVSSVCFNRDGAYL----ASGSYDGIVRIWDSTTGTCVKTLIDEE 274
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
V+F + LA ++ +K WD + +L
Sbjct: 275 HPPITHVKFSPNGKYILASNLNNTLKLWDYQKLRVL 310
|
Caenorhabditis elegans (taxid: 6239) |
| >sp|Q9V3J8|WDS_DROME Protein will die slowly OS=Drosophila melanogaster GN=wds PE=2 SV=1 | Back alignment and function description |
|---|
Score = 67.8 bits (164), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 57/209 (27%), Positives = 97/209 (46%), Gaps = 16/209 (7%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+VS V +SP+G ++ + LI+++ G+ D + I H ++D+A++ ++LL
Sbjct: 74 AVSAVKFSPNGEWLASSSADKLIKIW---GAYDGKFEKTISGHKLGISDVAWSSDSRLL- 129
Query: 468 VVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVWELS G+ L +GH Y C + I S + D ++ W D
Sbjct: 130 -VSGSDDKTLKVWELSTGKSLKTLKGHSN--YVFCCNFNPQSNLIVSGSFDESVRIW--D 184
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
+ P H + + ++ DGS + S +S DG W+ + G +T
Sbjct: 185 VRTGKCLKTLPAHSDPVSAVHFNRDGSLIVS--SSYDG--LCRIWDTASGQCLKTLIDDD 240
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA D+ +K WD
Sbjct: 241 NPPVSFVKFSPNGKYILAATLDNTLKLWD 269
|
Essential for viability. Drosophila melanogaster (taxid: 7227) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1101 | ||||||
| 449454049 | 1127 | PREDICTED: topless-related protein 3-lik | 0.995 | 0.972 | 0.826 | 0.0 | |
| 255542820 | 1132 | WD-repeat protein, putative [Ricinus com | 1.0 | 0.972 | 0.837 | 0.0 | |
| 87162556 | 1128 | Lissencephaly type-1-like homology motif | 0.999 | 0.975 | 0.809 | 0.0 | |
| 357511795 | 1129 | hypothetical protein MTR_7g112460 [Medic | 0.994 | 0.969 | 0.828 | 0.0 | |
| 224123676 | 1133 | predicted protein [Populus trichocarpa] | 0.993 | 0.965 | 0.812 | 0.0 | |
| 356576819 | 1131 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.973 | 0.808 | 0.0 | |
| 357441817 | 1140 | WD repeat-containing protein [Medicago t | 0.999 | 0.964 | 0.801 | 0.0 | |
| 356535043 | 1130 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.974 | 0.810 | 0.0 | |
| 356505795 | 1131 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.973 | 0.820 | 0.0 | |
| 356572948 | 1131 | PREDICTED: topless-related protein 3-lik | 1.0 | 0.973 | 0.824 | 0.0 |
| >gi|449454049|ref|XP_004144768.1| PREDICTED: topless-related protein 3-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1926 bits (4989), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 936/1132 (82%), Positives = 1014/1132 (89%), Gaps = 36/1132 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVH+LEKESGF+FNMKYFE+KVQAG+W+EVEKYLSG+
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHRLEKESGFYFNMKYFEDKVQAGEWEEVEKYLSGY 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR DKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRSDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTK AR IMLIELKKLIEANPLFRDKL FP LKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKAARSIMLIELKKLIEANPLFRDKLVFPALKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSPPNGPLAPTPVNLPVA KPA YA LG HSPFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFMDHTCSPPNGPLAPTPVNLPVA---KPAPYAPLGAHSPFPP 237
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
T A ANANALAGWMANASASSSVQAAVVTASSIPVPQNQVS+LKH RTPP+ PGMVDYQN
Sbjct: 238 TGATANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSILKHARTPPSNPGMVDYQN 297
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
P+H+QLMKRLR A S EEVTY + R Q +WS++DLPRTVA +LHQGSTV SMDFHP+H T
Sbjct: 298 PEHDQLMKRLRSAQSVEEVTYPAPRQQASWSIEDLPRTVAFTLHQGSTVTSMDFHPTHHT 357
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL +R+RL+SKPFK+WD+++ SL FQA+I KD PISVSRV WSPDG
Sbjct: 358 LLLVGSNNGEVTLWELGIRERLISKPFKLWDLSSRSLAFQAAIVKDTPISVSRVTWSPDG 417
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+VGVAFTKHL+ LYSY SN+L Q S+IDAHVG VNDLAFA+PNK LCVVTCG+DKLIK
Sbjct: 418 TFVGVAFTKHLVHLYSYNSSNELNQQSEIDAHVGGVNDLAFAHPNKQLCVVTCGEDKLIK 477
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW++ GRKLF FEGHEA VYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAPG
Sbjct: 478 VWDIGGRKLFTFEGHEASVYSICPHHKENIQFIFSTALDGKIKAWLYDHMGSRVDYDAPG 537
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
WCTTMLYSADGSRLFSCGTSKDGDS+LVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 538 KWCTTMLYSADGSRLFSCGTSKDGDSYLVEWNESEGAIKRTYLGFRKKSTGVVQFDTTQN 597
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
HFLAVGEDSQIKFWDMDNVNILT TDAEGGLP+LPRLRF+KEGNLLAVTT DNGFKILAN
Sbjct: 598 HFLAVGEDSQIKFWDMDNVNILTYTDAEGGLPSLPRLRFNKEGNLLAVTT-DNGFKILAN 656
Query: 659 AIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII-- 715
A+G+RSL+A+E+ PFEALR+P+ES ALKVS SAV+S +P NCKVERSSPVRP II
Sbjct: 657 AVGMRSLKAIESTTPFEALRSPMES-ALKVSGPSAVASVSPVNCKVERSSPVRPPSIING 715
Query: 716 -------------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 750
LAEIVD CRLVTMP++ D+S KVVRLLYTNS V
Sbjct: 716 VEGLGRNLDKARTVEDAIDKAKPWQLAEIVDPASCRLVTMPDNADSSHKVVRLLYTNSGV 775
Query: 751 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810
GLLALGSNG+QKLWKW RNEQNPSGKATA+ VPQHW P+SGLLM NDV GVNLEEAVPCI
Sbjct: 776 GLLALGSNGIQKLWKWTRNEQNPSGKATANVVPQHWQPNSGLLMTNDVLGVNLEEAVPCI 835
Query: 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 870
ALSKNDSYVMSA+GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 836 ALSKNDSYVMSASGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTI 895
Query: 871 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 930
HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLC+WSIDTWEKRKS+TI +
Sbjct: 896 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCLWSIDTWEKRKSITIQL 955
Query: 931 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 990
PAGK P GDTRVQF++DQ+R+LVVHETQ+AIYDASKM+RIRQW PQDAL APIS A YSC
Sbjct: 956 PAGKAPVGDTRVQFHSDQIRLLVVHETQIAIYDASKMDRIRQWVPQDALPAPISYAAYSC 1015
Query: 991 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050
NSQLV+ATFCDGN+GVFDADTLRLRC IAPS YL +VLN SQ +YPLVVA HPL+PNQ
Sbjct: 1016 NSQLVYATFCDGNVGVFDADTLRLRCRIAPSVYLPSAVLNSSQAIYPLVVATHPLDPNQL 1075
Query: 1051 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1101
AIGL+DGSVKV+EP+ESEGKWGVSPP+DNGILN RT SSS TSNHTPDQ+QR
Sbjct: 1076 AIGLSDGSVKVIEPTESEGKWGVSPPMDNGILNGRTASSSTTSNHTPDQIQR 1127
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255542820|ref|XP_002512473.1| WD-repeat protein, putative [Ricinus communis] gi|223548434|gb|EEF49925.1| WD-repeat protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1922 bits (4980), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 948/1132 (83%), Positives = 1021/1132 (90%), Gaps = 31/1132 (2%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKF ESVHKLEK+SGF+FNMKYFEEKVQAG+W+EVE YLSGF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFMESVHKLEKDSGFYFNMKYFEEKVQAGEWEEVENYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
LSNFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLGFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTCSPPNGPLAP PVNLPVAAVAKP++Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPPNGPLAPAPVNLPVAAVAKPSAYPSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
TAAAANA ALAGWMANASASSSVQAAVVTASS+PVPQNQVSVLK PRTPPT PGMVDYQN
Sbjct: 241 TAAAANAGALAGWMANASASSSVQAAVVTASSMPVPQNQVSVLKRPRTPPTAPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQ-TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
PDHEQLMKRLRPA S +EVTY +SR Q +WSLDDLPRTVA+++HQGS V SMDFHPSHQT
Sbjct: 301 PDHEQLMKRLRPAQSVDEVTYPTSRQQASWSLDDLPRTVALTMHQGSAVTSMDFHPSHQT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLLVGS+NGE+TLWEL R+RLVSKPFKIW++ +CSL FQAS KD P+SV+RV WSPDG
Sbjct: 361 LLLVGSANGEVTLWELVQRERLVSKPFKIWEITSCSLQFQASFVKDAPVSVNRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
+ VG AF KHLI LY+Y GS+DLRQ +IDAH G VNDLAFA+PNK LCVVTCGDDKLIK
Sbjct: 421 SLVGAAFNKHLIHLYAYTGSSDLRQQLEIDAHAGGVNDLAFAHPNKQLCVVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD +GSRVDYDAPG
Sbjct: 481 VWDLGGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNVGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-GVVQFDTTQ 597
HWCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG IKR YAGFRKKS GVVQFDTTQ
Sbjct: 541 HWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGAIKRHYAGFRKKSTAGVVQFDTTQ 600
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
NHFLA GED QIKFWDMDN N+LTS DA+GGLP+LPRLRF+KEGNLLAVTTADNGFKI+A
Sbjct: 601 NHFLAAGEDGQIKFWDMDNTNVLTSIDADGGLPSLPRLRFNKEGNLLAVTTADNGFKIIA 660
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII-- 715
NA GLR+LRAVE P FEALR+PIES A+KVS +S V++ +P N KVERSSPVRPSPI+
Sbjct: 661 NAAGLRALRAVETPGFEALRSPIESAAIKVSGASGVANISPVNLKVERSSPVRPSPILNG 720
Query: 716 -------------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 750
LAEIV+ +CRLVT+P+STD+SSKVVRLLYTNS V
Sbjct: 721 VDPMSRSMEKLRTVDDVIDKTKPWQLAEIVEPDECRLVTLPDSTDSSSKVVRLLYTNSGV 780
Query: 751 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810
G+LALGSNG+QKLWKW R++QNPSGKATA AVPQHW P+SGLLMANDV+GVNLEEAVPCI
Sbjct: 781 GILALGSNGIQKLWKWARSDQNPSGKATAGAVPQHWQPNSGLLMANDVSGVNLEEAVPCI 840
Query: 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 870
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 841 ALSKNDSYVMSAAGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGMEDSTI 900
Query: 871 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 930
HIYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADAQLCVWSIDTWEKRKS TI I
Sbjct: 901 HIYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAQLCVWSIDTWEKRKSFTIQI 960
Query: 931 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 990
PAGK PTG TRVQF++DQ R+LVVHETQLAIYDASKM+RIRQW PQDA+SAPIS A YSC
Sbjct: 961 PAGKAPTGVTRVQFHSDQTRLLVVHETQLAIYDASKMDRIRQWVPQDAMSAPISYAAYSC 1020
Query: 991 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050
NSQL+FA+F DGNIGVFDAD+LRLRC IAPS YLSP+VLNGSQ++YPLVVAAHP E NQ
Sbjct: 1021 NSQLIFASFRDGNIGVFDADSLRLRCRIAPSAYLSPAVLNGSQSIYPLVVAAHPHETNQL 1080
Query: 1051 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSR-TTSSSTSNHTPDQLQR 1101
A+GLTDGSVKVMEP S+GKWG SPPVDNGILN R T+SS+TSNHTPDQLQR
Sbjct: 1081 AVGLTDGSVKVMEPKASDGKWGTSPPVDNGILNGRTTSSSTTSNHTPDQLQR 1132
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|87162556|gb|ABD28351.1| Lissencephaly type-1-like homology motif; CTLH, C-terminal to LisH motif; Nitrous oxide reductase, N-terminal; WD40-like; Quinonprotein alcohol dehydrogenase-like [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1910 bits (4948), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1129 (80%), Positives = 1005/1129 (89%), Gaps = 29/1129 (2%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVAYTSLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRTPP TPG+VDYQN
Sbjct: 241 NVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRTPPATPGIVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V S+DFHPSH TL
Sbjct: 301 TDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSVTSLDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDGN
Sbjct: 361 LLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKSNGVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSNGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVTT DNGFKI+ANA
Sbjct: 601 FLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVTTVDNGFKIMANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII---- 715
GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSSPVRP PI+
Sbjct: 661 TGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSSPVRPPPILNGVD 719
Query: 716 ----------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 753
L EI+D QCR VTMP++TD+ SKVVRLLYTNSAVG+L
Sbjct: 720 PMSRSVEKSRVEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVVRLLYTNSAVGIL 779
Query: 754 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813
ALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AGVNLEEAVPCIALS
Sbjct: 780 ALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGVNLEEAVPCIALS 839
Query: 814 KNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873
KNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNII+IG EDSTIHIY
Sbjct: 840 KNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIISIGMEDSTIHIY 899
Query: 874 NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG 933
NVRVDEVKSKLKGHQ+RITGLAFST+LNILVSSGADAQ+CVWSIDTWEKRKS+ I +PAG
Sbjct: 900 NVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTWEKRKSIPIQLPAG 959
Query: 934 KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ 993
K+P GDTRVQF++DQ+R+LVVHETQLAIYD SKMERIRQW PQDALSAPIS A YSCNSQ
Sbjct: 960 KSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALSAPISYAAYSCNSQ 1019
Query: 994 LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1053
L++A+FCD NIGVFDAD+LRLRC IAP LS + L+ SQ VYPLV+AAHPLEPNQFA+G
Sbjct: 1020 LIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVIAAHPLEPNQFAVG 1079
Query: 1054 LTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTS-SSTSNHTPDQLQR 1101
L+DGSVKV+EPSESEGKWG SPP+DNGI+N + S S+TSNHT DQ QR
Sbjct: 1080 LSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQAQR 1128
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357511795|ref|XP_003626186.1| hypothetical protein MTR_7g112460 [Medicago truncatula] gi|355501201|gb|AES82404.1| hypothetical protein MTR_7g112460 [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1904 bits (4933), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 934/1128 (82%), Positives = 1005/1128 (89%), Gaps = 33/1128 (2%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIML+ELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLLELKKLIEANPLFRDKLVFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGT--HSPF 238
WQHQLCKNPR NPDIKTLF DH+C+P NGPLAPTPVNLPVAAVAKPA+Y SLG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFIDHSCTPSNGPLAPTPVNLPVAAVAKPAAYTSLGVGAHGPF 240
Query: 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDY 297
PP AA ANANALAGWMANAS SSSVQAAVVTAS+IPVP NQVS+LK P TP T PGMV+Y
Sbjct: 241 PPAAATANANALAGWMANASVSSSVQAAVVTASTIPVPHNQVSILKRPITPSTTPGMVEY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLRPAPS EEV+Y S+R +WSLDDLPRTVA+SLHQGS+V SMDFHPSHQ
Sbjct: 301 QSADHEQLMKRLRPAPSVEEVSYPSARQASWSLDDLPRTVAMSLHQGSSVTSMDFHPSHQ 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS+NGEI+LWEL MR+RLVSKPFKIWD++ACSLPFQA++ KD P SVSRV WS D
Sbjct: 361 TLLLVGSNNGEISLWELGMRERLVSKPFKIWDISACSLPFQAAVVKDTP-SVSRVTWSLD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
G++VGVAFTKHLI +Y+Y GSN+L Q +IDAH+G VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GSFVGVAFTKHLIHIYAYNGSNELAQRVEIDAHIGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+L+GR+LFNFEGHEAPVYSICPHHKENIQFIFSTA+DGKIKAWLYD MGSRVDYDAP
Sbjct: 480 KVWDLTGRRLFNFEGHEAPVYSICPHHKENIQFIFSTAVDGKIKAWLYDNMGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
GHWCTTMLYSADG+RLFSCGTSKDGDSFLVEWNESEG IKRTY GFRKKS GVVQFDTTQ
Sbjct: 540 GHWCTTMLYSADGTRLFSCGTSKDGDSFLVEWNESEGAIKRTYNGFRKKSAGVVQFDTTQ 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLA GEDSQIKFWDMDNVN LTST+AEGGL LP LRF+KEGNLLAVTTADNGFKILA
Sbjct: 600 NRFLAAGEDSQIKFWDMDNVNPLTSTEAEGGLQGLPHLRFNKEGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII-- 715
NA GLRSLR VE P FEALR+PIES A KVS SSAV+ +P +CKVERSSP RPS I+
Sbjct: 660 NAGGLRSLRTVETPAFEALRSPIESAANKVSGSSAVNV-SPVSCKVERSSPARPSQILNG 718
Query: 716 -------------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 750
L EIVD CRLVTMP+STDTSSKVVRLLYTNS
Sbjct: 719 VDPAGRNAEKPRTVEDVMDRTKSWQLFEIVDPAHCRLVTMPDSTDTSSKVVRLLYTNSGA 778
Query: 751 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810
GLLALGSNGVQKLWKW RN+QNPSGKATAS VPQHW P+SGLLM NDV+GVNLEEAVPCI
Sbjct: 779 GLLALGSNGVQKLWKWSRNDQNPSGKATASVVPQHWQPNSGLLMTNDVSGVNLEEAVPCI 838
Query: 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 870
ALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM+PPPASTFLAFHPQDNNIIAIG EDSTI
Sbjct: 839 ALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMAPPPASTFLAFHPQDNNIIAIGMEDSTI 898
Query: 871 HIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 930
HIYNVRVDEVKSKLKGHQKRI+GLAFST+L ILVSSGADA LCVWSIDTWEKRKSV I +
Sbjct: 899 HIYNVRVDEVKSKLKGHQKRISGLAFSTNLGILVSSGADAHLCVWSIDTWEKRKSVPIQL 958
Query: 931 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 990
P GK P G+TRVQF++DQ+R+LV HETQLAIYDASKMERIRQW PQD LSAPIS A YSC
Sbjct: 959 PVGKAPVGETRVQFHSDQLRLLVSHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSC 1018
Query: 991 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050
NSQL+FATFCDGN GVFDAD+LRLRC IAPSTY + + L+GSQ VYP VVAAHPLEPNQF
Sbjct: 1019 NSQLIFATFCDGNTGVFDADSLRLRCRIAPSTYFTATTLSGSQAVYPFVVAAHPLEPNQF 1078
Query: 1051 AIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHTPDQ 1098
A+GLTDGSVKV+EP ESEGKWG SPP+DNG++N R +SSTSNHTPDQ
Sbjct: 1079 ALGLTDGSVKVIEPIESEGKWGSSPPMDNGMMNGR-AASSTSNHTPDQ 1125
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224123676|ref|XP_002330180.1| predicted protein [Populus trichocarpa] gi|222871636|gb|EEF08767.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1904 bits (4931), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 926/1140 (81%), Positives = 1003/1140 (87%), Gaps = 46/1140 (4%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFLEEEKFKESVHKLEKESGF+FNMKYFEEKV AG+WDEVEKYL+GF
Sbjct: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFYFNMKYFEEKVLAGEWDEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAK V+ILV+DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKGVEILVSDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IML+ELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN
Sbjct: 121 LNNFRENEQLSKYGDTKTARSIMLVELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS-YASLGTHSPFP 239
WQHQLCKNPR NPDIKTLFTDHTCSP NGPLA PVNLPVAA A + Y LG H PFP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCSPMNGPLAAAPVNLPVAAAAAKPAAYTPLGAHGPFP 240
Query: 240 PTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTP-GMVDYQ 298
T AAAN +ALA WMAN SASSSVQAAVVTASSIP+PQNQV VLK PRTPPT G+VDYQ
Sbjct: 241 ATGAAANTSALASWMANTSASSSVQAAVVTASSIPIPQNQVPVLKRPRTPPTALGIVDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSR-HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
NPDHE L+KRLRPA S EEVTY +SR H +WSL+ LPRTVA SLH GS V+SMDFHPSH
Sbjct: 301 NPDHE-LIKRLRPAQSVEEVTYPASRQHASWSLEYLPRTVAFSLHPGSAVMSMDFHPSHH 359
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLLLVGS NGEITLWEL R+RL SKPFKIWDM+ACSL FQAS FKD ISV+RVAWSPD
Sbjct: 360 TLLLVGSVNGEITLWELISRERLFSKPFKIWDMSACSLQFQASGFKDASISVTRVAWSPD 419
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN+VG AF KHLI LY+Y G NDLRQH +IDAHVG VNDLAFA+PNK LCVVTCGDDKLI
Sbjct: 420 GNFVGAAFNKHLIHLYAYNGPNDLRQHLEIDAHVGGVNDLAFAHPNKQLCVVTCGDDKLI 479
Query: 478 K--------VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG 529
K VW+L+GRKLFNF GHEAPVY+ICPHHKENIQFIFSTAIDGKIKAWLYD MG
Sbjct: 480 KAIYIMLKQVWDLTGRKLFNFGGHEAPVYNICPHHKENIQFIFSTAIDGKIKAWLYDNMG 539
Query: 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589
SRVDYDAPG WCTTMLYS DGSRLFSCGTSKDG+S+LVEWNESEG+IKR++ GFRKKS G
Sbjct: 540 SRVDYDAPGRWCTTMLYSTDGSRLFSCGTSKDGESYLVEWNESEGSIKRSFVGFRKKSAG 599
Query: 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649
VVQFDTTQNHFLA G+D QIKFWDM+N N+LTSTDA+GGL LPRLRF++EGNLLAV+TA
Sbjct: 600 VVQFDTTQNHFLAAGDDGQIKFWDMENTNVLTSTDADGGLQTLPRLRFNREGNLLAVSTA 659
Query: 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709
DNGFKILANA GLRSLRAVE FEALR+P+ES A+KVS +S++++ +P NCKVER+SPV
Sbjct: 660 DNGFKILANAAGLRSLRAVETQSFEALRSPMESAAIKVSGASSIANASPVNCKVERNSPV 719
Query: 710 RPSPII---------------------------LAEIVDSGQCRLVTMPESTDTSSKVVR 742
RPSPI+ LAEI D +CRLVT+PES DTSSKVVR
Sbjct: 720 RPSPILNGVDPLNRSMEKPRTVDDVIDKTKPWQLAEIADPSECRLVTLPESADTSSKVVR 779
Query: 743 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 802
LLYTNS VG+LALG+NG+QKLWKW RNEQNPSGKATAS PQHW P+SGLLM NDV+GVN
Sbjct: 780 LLYTNSGVGMLALGANGIQKLWKWPRNEQNPSGKATASVAPQHWQPNSGLLMTNDVSGVN 839
Query: 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 862
LEEAVPCIALSKNDSYVMSATGGK+SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA
Sbjct: 840 LEEAVPCIALSKNDSYVMSATGGKVSLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 899
Query: 863 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 922
IG EDSTIHIYNVRVDEVKSKLKGHQKR+TGLAFST+LNILVSSGADAQLC+WSIDTWEK
Sbjct: 900 IGMEDSTIHIYNVRVDEVKSKLKGHQKRVTGLAFSTNLNILVSSGADAQLCIWSIDTWEK 959
Query: 923 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP 982
RKSV I IPAGK+PTGDTRVQF++DQ R+LV+HETQLAIYDASKMERIRQW PQDA+SAP
Sbjct: 960 RKSVAIQIPAGKSPTGDTRVQFHSDQTRLLVIHETQLAIYDASKMERIRQWVPQDAVSAP 1019
Query: 983 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1042
IS A YSCNSQL++ATFCDGNIGVFDAD+LRLRC IAPS Y NGSQTVYPLVVA
Sbjct: 1020 ISYAAYSCNSQLIYATFCDGNIGVFDADSLRLRCRIAPSVY------NGSQTVYPLVVAT 1073
Query: 1043 HPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSR-TTSSSTSNHTPDQLQR 1101
HPL+PNQ A+GLTDGSVKV+EP+ESEGKWG SPPVDNG+LN R T+SS+TSNHT DQLQR
Sbjct: 1074 HPLDPNQLALGLTDGSVKVIEPTESEGKWGTSPPVDNGVLNGRTTSSSTTSNHTLDQLQR 1133
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356576819|ref|XP_003556527.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1902 bits (4926), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1131 (80%), Positives = 1006/1131 (88%), Gaps = 30/1131 (2%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLP+AAVAKPA+Y SLG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPVNLPIAAVAKPAAYTSLGAHGPFPP 240
Query: 241 TAAAANANALA-GWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQ 298
AAA GWMANASASSSVQAAVVTAS++PVPQNQV +LK PRTPP PGM+DYQ
Sbjct: 241 AAAATANANALAGWMANASASSSVQAAVVTASTMPVPQNQVPILKRPRTPPANPGMIDYQ 300
Query: 299 NPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQT 358
N DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH T
Sbjct: 301 NADHEQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHT 360
Query: 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418
LLL GS+NGEI+LWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG
Sbjct: 361 LLLAGSNNGEISLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDG 420
Query: 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478
++VG+AFTKHLI LY+Y G N+L Q ++DAHVG VNDL+FA+PNK +C+VTCGDDKLIK
Sbjct: 421 SFVGIAFTKHLIHLYAYTGPNELTQRIEVDAHVGGVNDLSFAHPNKQMCIVTCGDDKLIK 480
Query: 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
VW+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPG
Sbjct: 481 VWDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPG 540
Query: 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598
HWCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 HWCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQN 600
Query: 599 HFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658
FLA GED Q+KFWDMDN+N+L S+DA+GGL +LPRLRF+KEGN+LAVTT DNGFKILAN
Sbjct: 601 RFLAAGEDGQVKFWDMDNINLLISSDADGGLQSLPRLRFNKEGNILAVTTVDNGFKILAN 660
Query: 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII--- 715
A GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+
Sbjct: 661 ASGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGV 720
Query: 716 ------------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 751
L+EI+D QCR VTMPESTD+SSKVVRLLYTNSAVG
Sbjct: 721 DPMGRSAEKPRTVEDVIDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVVRLLYTNSAVG 780
Query: 752 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 811
+LALGSNG+QKLWKW R+EQNP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIA
Sbjct: 781 ILALGSNGIQKLWKWARSEQNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIA 840
Query: 812 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 871
LSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIH
Sbjct: 841 LSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIH 900
Query: 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP 931
IYNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADA LCVWSIDTWEKRKS+ I +P
Sbjct: 901 IYNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKSIPIQLP 960
Query: 932 AGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN 991
AGK+P GDTRVQF++DQ+R+LVVHETQLAIYDASKMERIRQW PQD LSAPIS A YSCN
Sbjct: 961 AGKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCN 1020
Query: 992 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051
SQL++ATFCD NIGVFDAD+LRLRC IAPS LSP+ L+GSQ VYPLVVAAHPLEPNQFA
Sbjct: 1021 SQLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFA 1080
Query: 1052 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1101
+GLTDGSVKV+EP+ESEGKWG SPP+DNGILN R SSS TSNHT DQ QR
Sbjct: 1081 VGLTDGSVKVIEPNESEGKWGTSPPMDNGILNGRAGSSSTTSNHTADQAQR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357441817|ref|XP_003591186.1| WD repeat-containing protein [Medicago truncatula] gi|355480234|gb|AES61437.1| WD repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 1900 bits (4923), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 914/1141 (80%), Positives = 1005/1141 (88%), Gaps = 41/1141 (3%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFL+EEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLDEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLAGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDK KAV+ILV DLKVFSTFNEEL+KEITQLL
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKPKAVEILVGDLKVFSTFNEELYKEITQLLI 120
Query: 121 LSNF------------RENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKS 168
L+NF RENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKLAFPTLKS
Sbjct: 121 LNNFSMPTDLYFISYDRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLAFPTLKS 180
Query: 169 SRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPAS 228
SRLRTLINQSLNWQHQLCKNPR NPDIKTLF DHTCSP NGPLAPTPVNLP++AVAKP +
Sbjct: 181 SRLRTLINQSLNWQHQLCKNPRPNPDIKTLFIDHTCSPSNGPLAPTPVNLPISAVAKPVA 240
Query: 229 YASLGTHSPFPPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRT 288
Y SLG H PFPP A ANANALAGWMANASASSSVQAAVVT+S++PVPQNQVS+LK PRT
Sbjct: 241 YTSLGAHGPFPPNVATANANALAGWMANASASSSVQAAVVTSSTMPVPQNQVSILKRPRT 300
Query: 289 PP-TPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTV 347
PP TPG+VDYQN DHEQLMKRLRP S EEV+Y +R +WSLDDLPRTVA++LHQGS+V
Sbjct: 301 PPATPGIVDYQNTDHEQLMKRLRPGHSVEEVSYPVARQASWSLDDLPRTVAMTLHQGSSV 360
Query: 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407
S+DFHPSH TLLLVGSSNGEITLWEL++R+RLVSKPFKIWD++ACSLPFQA+ KD PI
Sbjct: 361 TSLDFHPSHHTLLLVGSSNGEITLWELSLRERLVSKPFKIWDVSACSLPFQAAAVKDAPI 420
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
SVSRV WSPDGN+VGVAFTKHLI LY+Y GSN+L Q ++DAHVG VNDL+FA PNK LC
Sbjct: 421 SVSRVTWSPDGNFVGVAFTKHLIHLYAYTGSNELAQRIEVDAHVGGVNDLSFALPNKQLC 480
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527
+VTCGDDKLIKVW+ +GR+LF FEGH+APVYSICPHHKENIQFIFSTAIDGKIKAWLYD
Sbjct: 481 IVTCGDDKLIKVWDANGRRLFTFEGHDAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDN 540
Query: 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS
Sbjct: 541 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKS 600
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647
NGVVQFDTTQN FL GED Q+KFWDMDN+N+L STDA+GGL LPRL+F+KEGN+LAVT
Sbjct: 601 NGVVQFDTTQNRFLVAGEDGQLKFWDMDNINLLASTDADGGLQGLPRLKFNKEGNILAVT 660
Query: 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707
T DNGFKI+ANA GLRSLR +E P FEALR+PIES ++KVS SS ++ +P NCKVERSS
Sbjct: 661 TVDNGFKIMANATGLRSLRTIETPAFEALRSPIESTSIKVSGSS-TANVSPVNCKVERSS 719
Query: 708 PVRPSPII--------------------------LAEIVDSGQCRLVTMPESTDTSSKVV 741
PVRP PI+ L EI+D QCR VTMP++TD+ SKVV
Sbjct: 720 PVRPPPILNGVDPMSRSVEKSRVEDATDRTKSWQLTEILDPVQCRSVTMPDTTDSFSKVV 779
Query: 742 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 801
RLLYTNSAVG+LALGSNGVQKLWKW RNEQNP+GKATAS VPQ W P+SGLLM ND+AGV
Sbjct: 780 RLLYTNSAVGILALGSNGVQKLWKWARNEQNPTGKATASVVPQRWQPNSGLLMTNDIAGV 839
Query: 802 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 861
NLEEAVPCIALSKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNII
Sbjct: 840 NLEEAVPCIALSKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNII 899
Query: 862 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 921
+IG EDSTIHIYNVRVDEVKSKLKGHQ+RITGLAFST+LNILVSSGADAQ+CVWSIDTWE
Sbjct: 900 SIGMEDSTIHIYNVRVDEVKSKLKGHQRRITGLAFSTNLNILVSSGADAQMCVWSIDTWE 959
Query: 922 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSA 981
KRKS+ I +PAGK+P GDTRVQF++DQ+R+LVVHETQLAIYD SKMERIRQW PQDALSA
Sbjct: 960 KRKSIPIQLPAGKSPVGDTRVQFHSDQIRLLVVHETQLAIYDGSKMERIRQWIPQDALSA 1019
Query: 982 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1041
PIS A YSCNSQL++A+FCD NIGVFDAD+LRLRC IAP LS + L+ SQ VYPLV+A
Sbjct: 1020 PISYAAYSCNSQLIYASFCDANIGVFDADSLRLRCRIAPPICLSSAALSRSQAVYPLVIA 1079
Query: 1042 AHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTS-SSTSNHTPDQLQ 1100
AHPLEPNQFA+GL+DGSVKV+EPSESEGKWG SPP+DNGI+N + S S+TSNHT DQ Q
Sbjct: 1080 AHPLEPNQFAVGLSDGSVKVIEPSESEGKWGSSPPMDNGIMNGKAPSPSTTSNHTADQAQ 1139
Query: 1101 R 1101
R
Sbjct: 1140 R 1140
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356535043|ref|XP_003536058.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1892 bits (4900), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 916/1130 (81%), Positives = 1006/1130 (89%), Gaps = 29/1130 (2%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYLSGF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+QDKAKAV+ILV DLK+FSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDQQDKAKAVEILVGDLKMFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTAR IMLIELKKLIEANPLFRDKL FPTLKSSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARSIMLIELKKLIEANPLFRDKLIFPTLKSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTP+NLP+AAVAKPA+Y LG H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCAPPNGPLAPTPINLPIAAVAKPATYTPLGAHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPP-TPGMVDYQN 299
AA ANANALAGWMANASASSSVQAAVVTAS+IPVPQNQ PRTPP PGMVDYQN
Sbjct: 241 AAATANANALAGWMANASASSSVQAAVVTASTIPVPQNQXXXXXRPRTPPANPGMVDYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DH+QLMKRLRP S EEV+Y +R +WSLDDLPRTV ++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHDQLMKRLRPGHSVEEVSYPLARQASWSLDDLPRTVTMTLHQGSSVTSMDFHPSHHTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEITLWEL++R++LVSKPFKIWD++ACSLPFQA+ KD PISVSRV WSPDG+
Sbjct: 361 LLVGSNNGEITLWELSLREKLVSKPFKIWDVSACSLPFQAAAVKDAPISVSRVTWSPDGS 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VG+AFTKHLI LY+ GSN+L Q ++DAHVG VNDLAFA+PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGIAFTKHLIHLYACTGSNELTQRIEVDAHVGGVNDLAFAHPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+L+GRKLF+FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDLNGRKLFSFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADG+RLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGTRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED Q+KFWDMDN+N+L ST+A+GGL +LPRLRF+KEGN+LAVTT DNGFKILANA
Sbjct: 601 FLAAGEDGQVKFWDMDNINLLISTEADGGLQSLPRLRFNKEGNILAVTTMDNGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII---- 715
GLRSLR +E P FEALR+PIES +KV + S+ + +P NCKVERSSPVRPSPI+
Sbjct: 661 SGLRSLRTIETPAFEALRSPIESTPIKVVSGSSTVNVSPVNCKVERSSPVRPSPILNGVD 720
Query: 716 -----------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 752
L+EI+D QCR VTMPESTD+SSKV+RLLYTNSAVG+
Sbjct: 721 PMGRSVEKPRTVEDVTDRAKPWQLSEILDPVQCRSVTMPESTDSSSKVIRLLYTNSAVGI 780
Query: 753 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 812
LALGSNG+QKLWKW R+E NP+GKATA+ VP HW P++GLLM ND++GVNLEEAVPCIAL
Sbjct: 781 LALGSNGIQKLWKWARSELNPTGKATANVVPLHWQPNNGLLMTNDISGVNLEEAVPCIAL 840
Query: 813 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG +DSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMDDSTIHI 900
Query: 873 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 932
YNVRVDEVKSKLKGHQKRITGLAFST+LNILVSSGADA LCVWSIDTWEKRK++ I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTNLNILVSSGADAHLCVWSIDTWEKRKAIPIQLPA 960
Query: 933 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 992
GK+P GDTRVQF++DQ+R+LVVHETQLAIYDASKMERIRQW PQD LSAPIS A YSCNS
Sbjct: 961 GKSPVGDTRVQFHSDQLRLLVVHETQLAIYDASKMERIRQWVPQDVLSAPISYAAYSCNS 1020
Query: 993 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1052
QL++ATFCD NIGVFDAD+LRLRC IAPS LSP+ L+GSQ VYPLVVAAHPLEPNQFA+
Sbjct: 1021 QLIYATFCDANIGVFDADSLRLRCRIAPSICLSPAALSGSQGVYPLVVAAHPLEPNQFAV 1080
Query: 1053 GLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1101
GLTDGSVKV+EP+ESEGKWG PP DNGILN RT SSS TSNHT DQ QR
Sbjct: 1081 GLTDGSVKVIEPNESEGKWGTCPPTDNGILNGRTGSSSTTSNHTADQAQR 1130
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356505795|ref|XP_003521675.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1888 bits (4890), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 928/1131 (82%), Positives = 1010/1131 (89%), Gaps = 30/1131 (2%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD QDKAKAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDGQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L+NFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LTNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLPVAAVAKPA+Y S+G+H PFPP
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGSHGPFPP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPT-PGMVDYQN 299
AA AN NALAGWMANASASSSVQAAVVTAS+IPVPQNQVS+LK PRTPPT PGM DYQN
Sbjct: 241 AAATANTNALAGWMANASASSSVQAAVVTASTIPVPQNQVSILKRPRTPPTTPGMADYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRPAPS EEV+Y ++R + SLDDLPRTVA++LHQGS+V SMDFHPSH TL
Sbjct: 301 ADHEQLMKRLRPAPSVEEVSYPAARQASCSLDDLPRTVAMTLHQGSSVTSMDFHPSHPTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEI+LWEL RDRLVSKPFKIWD++ACSLPFQA++ KD PIS SRV WS DGN
Sbjct: 361 LLVGSNNGEISLWELGFRDRLVSKPFKIWDISACSLPFQAAMVKDSPISASRVTWSLDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAH+G VNDLAFA+ NK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHLNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+++GRKLFNFEGHEA VYSICPHHKE+IQF+FSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDIAGRKLFNFEGHEAAVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESEG IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESEGAIKRTYNGFRKKSTGVVQFDTTQNR 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED QIKFWDMDN+N+LTSTDAEGGL LP LRF+KEGNLLAVTTAD GFKILANA
Sbjct: 601 FLAAGEDGQIKFWDMDNINLLTSTDAEGGLQTLPHLRFNKEGNLLAVTTADKGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII---- 715
GLRSLR VE P FEALR+PIES A+KV++ S+ + +P NCKVE+SSPV PSPI+
Sbjct: 661 NGLRSLRTVETPGFEALRSPIESAAVKVASGSSAVNVSPVNCKVEKSSPVGPSPILNGVD 720
Query: 716 -----------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 752
L+EIVD+ QCRLVTMP+STD+SSKVVRLLYTNS G+
Sbjct: 721 TTGQNAEKPRTVEDGVDRAKPWQLSEIVDAVQCRLVTMPDSTDSSSKVVRLLYTNSGAGV 780
Query: 753 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 812
LALGSNGVQKLWKW R+EQNP+GKATAS VPQHW P+SGLLM NDVAGVNL+EAVPCIAL
Sbjct: 781 LALGSNGVQKLWKWARSEQNPNGKATASVVPQHWQPNSGLLMTNDVAGVNLDEAVPCIAL 840
Query: 813 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872
SKNDSYVMSA GGK+SLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIHI
Sbjct: 841 SKNDSYVMSACGGKVSLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHI 900
Query: 873 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 932
YNVRVDEVKSKLKGHQKRITGLAFST LNILVSSGADAQLCVWSIDTWEKRKSV I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPA 960
Query: 933 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 992
GK P GDTRVQF+ DQ+R+LV HETQLAIYDASKM+RIRQW PQD L+APIS A YSCNS
Sbjct: 961 GKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNS 1020
Query: 993 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLS-PSVLNGSQTVYPLVVAAHPLEPNQFA 1051
QL++ATFCDGN GVFDAD+LRLRC IA STY S P+ L+G+Q+ YP+ +AAHPLEPNQFA
Sbjct: 1021 QLIYATFCDGNTGVFDADSLRLRCRIALSTYFSPPAALSGNQSAYPVAIAAHPLEPNQFA 1080
Query: 1052 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1101
+GLTDGSVKV+EPSESEGKWG SPP+DNGILN R S+S TSN TPDQ QR
Sbjct: 1081 VGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASTSITSNLTPDQAQR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356572948|ref|XP_003554627.1| PREDICTED: topless-related protein 3-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1883 bits (4878), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 933/1131 (82%), Positives = 1008/1131 (89%), Gaps = 30/1131 (2%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
M+SLSRELVFLILQFLEEEK KESVHKLEKESGFFFNMKYFEEKVQAG+W+EVEKYL+GF
Sbjct: 1 MTSLSRELVFLILQFLEEEKLKESVHKLEKESGFFFNMKYFEEKVQAGEWEEVEKYLTGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAV+ILV DLKVFSTFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVEILVGDLKVFSTFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
LSNFRENEQLSKYGDTK ARGIMLIELKKLIEANPLFRDKL FPTL+SSRLRTLINQSLN
Sbjct: 121 LSNFRENEQLSKYGDTKNARGIMLIELKKLIEANPLFRDKLIFPTLRSSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240
WQHQLCKNPR NPDIKTLFTDHTC+PPNGPLAPTPVNLPVAAVAKPA+Y S+G H PF P
Sbjct: 181 WQHQLCKNPRPNPDIKTLFTDHTCTPPNGPLAPTPVNLPVAAVAKPAAYTSIGAHGPFLP 240
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTP-PTPGMVDYQN 299
A ANANALAGWMANASASSSVQAAVVTAS+IPVPQN VS+LK PRTP T GM DYQN
Sbjct: 241 ATATANANALAGWMANASASSSVQAAVVTASAIPVPQNPVSILKCPRTPLTTAGMADYQN 300
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL 359
DHEQLMKRLRPAPS EEV+ ++R +WSLDDLPRTVA++LHQGS+V SMDFHPSHQTL
Sbjct: 301 ADHEQLMKRLRPAPSVEEVSCPAARPASWSLDDLPRTVAMTLHQGSSVTSMDFHPSHQTL 360
Query: 360 LLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419
LLVGS+NGEITLWEL +RDRLVSKPFKIWD++ACSLPFQA++ KD PISVSRV WS DGN
Sbjct: 361 LLVGSNNGEITLWELGLRDRLVSKPFKIWDISACSLPFQAAMVKDAPISVSRVTWSLDGN 420
Query: 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
+VGVAFTKHLI LY+Y GSN+L Q ++DAH+G VNDLAFA+PNK LC+VTCGDDKLIKV
Sbjct: 421 FVGVAFTKHLIHLYAYTGSNELAQRIEVDAHIGGVNDLAFAHPNKQLCIVTCGDDKLIKV 480
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
W+L+GRKLFNFEGHEAPVYSICPHHKE+IQF+FSTAIDGKIKAWLYD MGSRVDYDAPGH
Sbjct: 481 WDLTGRKLFNFEGHEAPVYSICPHHKESIQFVFSTAIDGKIKAWLYDNMGSRVDYDAPGH 540
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
WCTTMLYSADGSRLFSCGTSKDG+SFLVEWNESE IKRTY GFRKKS GVVQFDTTQN
Sbjct: 541 WCTTMLYSADGSRLFSCGTSKDGESFLVEWNESERAIKRTYNGFRKKSAGVVQFDTTQNC 600
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
FLA GED QIKFWDMDN+N+LTSTDAEGGL LP LRF+KEGN+LAVTTADNGFKILANA
Sbjct: 601 FLAAGEDGQIKFWDMDNINLLTSTDAEGGLQALPHLRFNKEGNVLAVTTADNGFKILANA 660
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII---- 715
GLRSLR VE P FEALR+PIES A+KV++ S+ + +P NCKVERSSPVRPSPI+
Sbjct: 661 NGLRSLRTVETPGFEALRSPIESAAVKVASGSSAVNVSPVNCKVERSSPVRPSPILNGVD 720
Query: 716 -----------------------LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL 752
L+EIVD+ QCRLVT P+STD+SSKVVRLLYTNS GL
Sbjct: 721 PMGRNVEKPRTVEDGIDKAKPWQLSEIVDAVQCRLVTTPDSTDSSSKVVRLLYTNSGAGL 780
Query: 753 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 812
LALGSNGVQKLWKW R EQNP+GKATAS VPQHW P+SGLLM NDV GVNL+EAVPCIAL
Sbjct: 781 LALGSNGVQKLWKWARCEQNPNGKATASVVPQHWQPNSGLLMTNDVTGVNLDEAVPCIAL 840
Query: 813 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872
SKNDSYVMSA GGKISLFNMMTFKVMTTFM PPPASTFLAFHPQDNNIIAIG EDSTIHI
Sbjct: 841 SKNDSYVMSACGGKISLFNMMTFKVMTTFMPPPPASTFLAFHPQDNNIIAIGMEDSTIHI 900
Query: 873 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA 932
YNVRVDEVKSKLKGHQKRITGLAFST LNILVSSGADAQLCVWSIDTWEKRKSV I +PA
Sbjct: 901 YNVRVDEVKSKLKGHQKRITGLAFSTCLNILVSSGADAQLCVWSIDTWEKRKSVPIQLPA 960
Query: 933 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 992
GK P GDTRVQF+ DQ+R+LV HETQLAIYDASKM+RIRQW PQD L+APIS A YSCNS
Sbjct: 961 GKAPVGDTRVQFHLDQIRLLVAHETQLAIYDASKMDRIRQWVPQDVLAAPISYAAYSCNS 1020
Query: 993 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP-SVLNGSQTVYPLVVAAHPLEPNQFA 1051
QL++ATF DGN GVFDAD+LRLRC IA STY SP + L+G+Q+VYP+VVAAHPLEPNQFA
Sbjct: 1021 QLIYATFSDGNTGVFDADSLRLRCRIALSTYFSPAAALSGNQSVYPVVVAAHPLEPNQFA 1080
Query: 1052 IGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS-TSNHTPDQLQR 1101
+GLTDGSVKV+EPSESEGKWG SPP+DNGILN R SSS TSNHTPD +R
Sbjct: 1081 VGLTDGSVKVIEPSESEGKWGTSPPMDNGILNGRAASSSTTSNHTPDLAKR 1131
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1101 | ||||||
| TAIR|locus:2086770 | 1131 | TPR2 "TOPLESS-related 2" [Arab | 0.644 | 0.627 | 0.713 | 0.0 | |
| TAIR|locus:2036204 | 1131 | TPL "TOPLESS" [Arabidopsis tha | 0.613 | 0.597 | 0.649 | 0.0 | |
| TAIR|locus:2198888 | 1120 | TPR1 "TOPLESS-related 1" [Arab | 0.708 | 0.696 | 0.593 | 6.4e-257 | |
| TAIR|locus:2040100 | 740 | AT2G25420 "AT2G25420" [Arabido | 0.338 | 0.504 | 0.353 | 4.1e-87 | |
| ASPGD|ASPL0000038644 | 577 | AN10391 [Emericella nidulans ( | 0.245 | 0.467 | 0.244 | 3.4e-16 | |
| FB|FBgn0037094 | 630 | CG7611 [Drosophila melanogaste | 0.178 | 0.312 | 0.256 | 5.8e-15 | |
| ASPGD|ASPL0000032162 | 1364 | AN8468 [Emericella nidulans (t | 0.423 | 0.341 | 0.226 | 8.7e-11 | |
| MGI|MGI:1916794 | 328 | Wdr5b "WD repeat domain 5B" [M | 0.177 | 0.594 | 0.256 | 6.2e-14 | |
| POMBASE|SPAC343.04c | 507 | SPAC343.04c "WD repeat protein | 0.116 | 0.252 | 0.294 | 1.2e-12 | |
| WB|WBGene00006474 | 376 | wdr-5.1 [Caenorhabditis elegan | 0.174 | 0.510 | 0.257 | 1.5e-12 |
| TAIR|locus:2086770 TPR2 "TOPLESS-related 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2664 (942.8 bits), Expect = 0., Sum P(2) = 0.
Identities = 514/720 (71%), Positives = 580/720 (80%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKESVHKLE+ESGFFFN+KYFEEK AG+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKESVHKLEQESGFFFNIKYFEEKALAGEWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALDR D+AKAV+IL DLKVF+TFNEEL+KEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRNDRAKAVEILAKDLKVFATFNEELYKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IM ELKKLIEANPLFR+KLAFP+ K+SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARSIMYTELKKLIEANPLFREKLAFPSFKASRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHS-PFP 239
WQHQLCKNPR NPDIKTLF DH+CSP NG A TPVNLPVAAVA+P+++ LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFLDHSCSPSNGARALTPVNLPVAAVARPSNFVPLGVHGGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-IPVPQNQVSVLKHPRTPPTP-GMVDY 297
P+ +QV+ LKHPR P G++DY
Sbjct: 241 SNPAPAPNANALAGWMANPNPSSSVPSGVVAASPFPMQPSQVNELKHPRAPSNSLGLMDY 300
Query: 298 QNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQ 357
Q+ DHEQLMKRLR A ++ EVTY + H SLDDLPR V ++ QGS VISMDFHPSH
Sbjct: 301 QSADHEQLMKRLRSAQTSNEVTYPAHSHPPASLDDLPRNVVSTIRQGSVVISMDFHPSHH 360
Query: 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417
TLL VG S+GE+TLWE+ R+++V++PFKIW+MAACS+ FQ SI K+ ISV+RVAWSPD
Sbjct: 361 TLLAVGCSSGEVTLWEVGSREKVVTEPFKIWNMAACSVIFQGSIVKEPSISVTRVAWSPD 420
Query: 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477
GN +GV+FTKHLI +Y+Y GS DLRQH +IDAHVG VNDLAFA+PNK +CVVTCGDDKLI
Sbjct: 421 GNLLGVSFTKHLIHVYAYQGS-DLRQHLEIDAHVGCVNDLAFAHPNKQMCVVTCGDDKLI 479
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
KVW+LSG+KLF FEGHEAPVYSICPH KENIQFIFSTA+DGKIKAWLYD +GSRVDYDAP
Sbjct: 480 KVWDLSGKKLFTFEGHEAPVYSICPHQKENIQFIFSTALDGKIKAWLYDNVGSRVDYDAP 539
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
G WCTTMLYSADGSRLFSCGTSK+GDSFLVEWNESEG +KRTY GFRKKS GVVQFDTT+
Sbjct: 540 GQWCTTMLYSADGSRLFSCGTSKEGDSFLVEWNESEGALKRTYLGFRKKSAGVVQFDTTR 599
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657
N FLAVGED+QIKFW+MDN N+LT +AEGGLPNLPRLRF+K+GNLLAVTTADNGFKILA
Sbjct: 600 NRFLAVGEDNQIKFWNMDNTNLLTVVEAEGGLPNLPRLRFNKDGNLLAVTTADNGFKILA 659
Query: 658 NAIGLRSLRAVENPPFEALRTPIEXXXXXXXXXXXXXXGTPANCKVER---SSPVRPSPI 714
N GLR+LRA E FEA + I+ +PA K+E SP RP+PI
Sbjct: 660 NTDGLRTLRAFEARSFEASKASIDMKVSTSAMASSI---SPAIGKIEHMDAGSPARPTPI 716
|
|
| TAIR|locus:2036204 TPL "TOPLESS" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2355 (834.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 452/696 (64%), Positives = 534/696 (76%)
Query: 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFFFNMKYFEEKVQAGDWDEVEKYLSGF 60
MSSLSRELVFLILQFL+EEKFKE+VHKLE+ESGFFFNMKYFE++V G+WDEVEKYLSGF
Sbjct: 1 MSSLSRELVFLILQFLDEEKFKETVHKLEQESGFFFNMKYFEDEVHNGNWDEVEKYLSGF 60
Query: 61 TKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLT 120
TKVDDNRYSMKIFFEIRKQKYLEALD+ D+ KAVDILV DLKVFSTFNEELFKEITQLLT
Sbjct: 61 TKVDDNRYSMKIFFEIRKQKYLEALDKHDRPKAVDILVKDLKVFSTFNEELFKEITQLLT 120
Query: 121 LSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQSLN 180
L NFRENEQLSKYGDTK+AR IML+ELKKLIEANPLFRDKL FPTL++SRLRTLINQSLN
Sbjct: 121 LENFRENEQLSKYGDTKSARAIMLVELKKLIEANPLFRDKLQFPTLRNSRLRTLINQSLN 180
Query: 181 WQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPV-AAVAKPASYASLGTHSPFP 239
WQHQLCKNPR NPDIKTLF DH+C PPNG AP+PVN P+ + K + LG H PF
Sbjct: 181 WQHQLCKNPRPNPDIKTLFVDHSCGPPNGARAPSPVNNPLLGGIPKAGGFPPLGAHGPFQ 240
Query: 240 PTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIP-VPQNQVSVLKHPRTPPTPGMVDYQ 298
PT P +P + LKHPRTPPT +DY
Sbjct: 241 PTASPVPTPLAGWMSSPSSVPHPAVSAGAIALGGPSIP----AALKHPRTPPTNASLDYP 296
Query: 299 NPDHEQLMKRLRPAPSAEEV---------TYSSSRH----QTWSLDDLPRTVAVSLHQGS 345
+ D E + KR RP ++EV ++S H + DDLP+TVA +L QGS
Sbjct: 297 SADSEHVSKRTRPMGISDEVNLGVNMLPMSFSGQAHGHSPAFKAPDDLPKTVARTLSQGS 356
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405
+ +SMDFHP QTLLLVG++ G+I LWE+ R+RLV K FK+WD++ CS+P QA++ K+
Sbjct: 357 SPMSMDFHPIKQTLLLVGTNVGDIGLWEVGSRERLVQKTFKVWDLSKCSMPLQAALVKEP 416
Query: 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL 465
+SV+RV WSPDG+ GVA+++H++QLYSY G D+RQH +IDAHVG VND++F+ PNK
Sbjct: 417 VVSVNRVIWSPDGSLFGVAYSRHIVQLYSYHGGEDMRQHLEIDAHVGGVNDISFSTPNKQ 476
Query: 466 LCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524
LCV+TCGDDK IKVW+ + G K FEGHEAPVYS+CPH+KENIQFIFSTA+DGKIKAWL
Sbjct: 477 LCVITCGDDKTIKVWDAATGVKRHTFEGHEAPVYSVCPHYKENIQFIFSTALDGKIKAWL 536
Query: 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
YD MGSRVDYDAPG WCTTM YSADG+RLFSCGTSKDG+SF+VEWNESEG +KRTY GF
Sbjct: 537 YDNMGSRVDYDAPGRWCTTMAYSADGTRLFSCGTSKDGESFIVEWNESEGAVKRTYQGFH 596
Query: 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644
K+S GVVQFDTT+N +LA G+D IKFWDMD V +LT+ D +GGL PR+RF+KEG+LL
Sbjct: 597 KRSLGVVQFDTTKNRYLAAGDDFSIKFWDMDAVQLLTAIDGDGGLQASPRIRFNKEGSLL 656
Query: 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680
AV+ +N KI+AN+ GLR L EN E+ + I
Sbjct: 657 AVSGNENVIKIMANSDGLRLLHTFENISSESSKPAI 692
|
|
| TAIR|locus:2198888 TPR1 "TOPLESS-related 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2473 (875.6 bits), Expect = 6.4e-257, P = 6.4e-257
Identities = 475/800 (59%), Positives = 589/800 (73%)
Query: 318 VTYSSSRH---QTWSL-DDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWE 373
+T+ H QT+ DDLP+TVA +L QGS+ +SMDFHP QTLLLVG++ G+I LWE
Sbjct: 325 MTFPGQAHGHNQTFKAPDDLPKTVARTLSQGSSPMSMDFHPIKQTLLLVGTNVGDIGLWE 384
Query: 374 LAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433
+ R+RLV K FK+WD++ CS+P QA++ K+ +SV+RV WSPDG+ GVA+++H++QLY
Sbjct: 385 VGSRERLVQKTFKVWDLSKCSMPLQAALVKEPVVSVNRVIWSPDGSLFGVAYSRHIVQLY 444
Query: 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEG 492
SY G D+RQH +IDAHVG VND+AF+ PNK LCV TCGDDK IKVW+ + G K + FEG
Sbjct: 445 SYHGGEDMRQHLEIDAHVGGVNDIAFSTPNKQLCVTTCGDDKTIKVWDAATGVKRYTFEG 504
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
HEAPVYSICPH+KENIQFIFSTA+DGKIKAWLYD MGSRVDY+APG WCTTM YSADG+R
Sbjct: 505 HEAPVYSICPHYKENIQFIFSTALDGKIKAWLYDNMGSRVDYEAPGRWCTTMAYSADGTR 564
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612
LFSCGTSKDG+SF+VEWNESEG +KRTY GF K+S GVVQFDTT+N +LA G+D IKFW
Sbjct: 565 LFSCGTSKDGESFIVEWNESEGAVKRTYQGFHKRSLGVVQFDTTKNRYLAAGDDFSIKFW 624
Query: 613 DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPP 672
DMD + +LT+ DA+GGL PR+RF+KEG+LLAV+ DN K++AN+ GLR L VEN
Sbjct: 625 DMDTIQLLTAIDADGGLQASPRIRFNKEGSLLAVSANDNMIKVMANSDGLRLLHTVENLS 684
Query: 673 FEALRTPIEXXXXXXXXXXXXXX----GTPANCK-----VERSSPVRPSPIILAEIVDSG 723
E+ + I G N + S + L E+ +
Sbjct: 685 SESSKPAINSIPMVERPASVVSIPGMNGDSRNMVDVKPVITEESNDKSKVWKLTEVGEPS 744
Query: 724 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 783
QCR + +PE+ + K+ RL++TNS +LAL SN + LWKW RN++N +GKATAS P
Sbjct: 745 QCRSLRLPENMRVT-KISRLIFTNSGNAILALASNAIHLLWKWQRNDRNATGKATASLPP 803
Query: 784 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS 843
Q W P+SG+LM NDVA N EEAVPC ALSKNDSYVMSA+GGKISLFNMMTFK M TFM
Sbjct: 804 QQWQPASGILMTNDVAETNPEEAVPCFALSKNDSYVMSASGGKISLFNMMTFKTMATFMP 863
Query: 844 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNIL 903
PPPA+TFLAFHPQDNNIIAIG +DSTI IYNVRVDEVKSKLKGH KRITGLAFS LN+L
Sbjct: 864 PPPAATFLAFHPQDNNIIAIGMDDSTIQIYNVRVDEVKSKLKGHSKRITGLAFSNVLNVL 923
Query: 904 VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG--DTRVQFNADQVRMLVVHETQLAI 961
VSSGADAQLCVW+ D WEK+KS + IP G++ + DTRVQF+ DQV LVVHETQLAI
Sbjct: 924 VSSGADAQLCVWNTDGWEKQKSKVLQIPQGRSTSSLSDTRVQFHQDQVHFLVVHETQLAI 983
Query: 962 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1021
Y+ +K+E ++QW +++ +API+ A +SC+SQL++ +F D I VF + LRLRC + PS
Sbjct: 984 YETTKLECMKQWPVRES-AAPITHATFSCDSQLIYTSFMDATICVFSSANLRLRCRVNPS 1042
Query: 1022 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGI 1081
YL S+ N + V+PLV+AAHP E N FA+GL+DG V + EP ESEGKWGV+PP +NG
Sbjct: 1043 AYLPASLSNSN--VHPLVIAAHPQESNMFAVGLSDGGVHIFEPLESEGKWGVAPPPENGS 1100
Query: 1082 LNXXXXXXXXXNHTPDQLQR 1101
+ DQ QR
Sbjct: 1101 ASAVTATPSVGASASDQPQR 1120
|
|
| TAIR|locus:2040100 AT2G25420 "AT2G25420" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 594 (214.2 bits), Expect = 4.1e-87, Sum P(2) = 4.1e-87
Identities = 139/393 (35%), Positives = 221/393 (56%)
Query: 696 GTPANCKV--ERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 753
GTP++ K +++ P + P EI D QC + +P+ + K+ RL Y+ S +L
Sbjct: 350 GTPSSMKFFFKKTVPRKKKP---NEIKDPSQCNALVLPDCF-SEEKIARLTYSPSGDYIL 405
Query: 754 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813
AL + KLW W + QN K P+ P SG M N++A +++++ C A+
Sbjct: 406 ALAEDATHKLWTWS-SSQNEFCKENVYPKPRLHQPQSGKTMENEMA-TSVQKSTSCFAVK 463
Query: 814 KNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873
SY+ S +GGKI++F++ F+ + +F SP P +T+ F P D ++A+G +D +I I+
Sbjct: 464 --GSYLFSTSGGKIAVFDLKNFEKVASFGSPTPMATYFIFIPGD--LLAVGLDDGSIFIH 519
Query: 874 NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK--RKSVTIHI- 930
+ +VK KL+GH ++IT LAFS N+LVSS +D +LC+WS +W K K+ T
Sbjct: 520 CLSSRKVKEKLEGHDQKITCLAFSRCFNVLVSSDSDGKLCLWSTKSWVKLTSKNSTRKFC 579
Query: 931 -PAGKTPTG-DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVY 988
+ T T +QF+ Q+ +LVVH+ + +Y+ ++ QW P DA I+ A Y
Sbjct: 580 NRSNLESTSLVTHIQFDPYQIELLVVHDGWIGLYEVRTLDCRLQWIP-DASDPAITSATY 638
Query: 989 SCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1048
S + ++++ F G+I + D+ T C I +++ S N S VYP VVAAHP PN
Sbjct: 639 SSDGEIIYVGFRCGSIKIVDSKTFMTLCQINLTSFTQLSTSNISLEVYPTVVAAHPSHPN 698
Query: 1049 QFAIGLTDGSVKVMEPSESEGKWGVSPPV-DNG 1080
Q + GL++G V V++P S G WG + P+ DNG
Sbjct: 699 QISAGLSNGKVIVLQPLWSGG-WGEAAPLEDNG 730
|
|
| ASPGD|ASPL0000038644 AN10391 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 191 (72.3 bits), Expect = 3.4e-16, Sum P(2) = 3.4e-16
Identities = 73/299 (24%), Positives = 127/299 (42%)
Query: 370 TLWELAMRDRLVSKPFKIWDMAACSLPF---QASIFKDVPISV--SRVAWSPDGNYVGVA 424
++W L + R S + D+ S F S K P+ V S + +SP + +
Sbjct: 207 SMWRLVLLLRRKSSDSDLLDLVRDSYRFFLQNISAIKCAPLQVYASALVFSPADSLIRKL 266
Query: 425 FTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479
F K + D+ H ++ H AV +++++ ++LL + DD+ +K+
Sbjct: 267 FGKE--EPNWIETKPDVANHWSPCLQALEGHEAAVLSVSYSHDSRLLA--SASDDRTVKI 322
Query: 480 WEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538
W+ +G EGH V S+ H + ++A D +K W DT + + G
Sbjct: 323 WDTETGSLQHTLEGHSDLVRSVIFSHDSRL---LASASDSTVKIW--DTGTGSLQHTLEG 377
Query: 539 H--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596
H W ++++S D S+L + S DS + W+ G+++ T G R V+ F
Sbjct: 378 HRDWVRSVIFSHD-SQLLA---SASDDSTVKIWDTGTGSLQHTLEGHRDWVRSVI-FSHD 432
Query: 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ +DS +K WD L T EG + + FS + LLA + D +I
Sbjct: 433 SQLLASASDDSTVKIWDT-GTGSLQHT-LEGHRDWVRSVIFSHDSRLLASASDDRTVRI 489
|
|
| FB|FBgn0037094 CG7611 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 143 (55.4 bits), Expect = 5.8e-15, Sum P(3) = 5.8e-15
Identities = 56/218 (25%), Positives = 100/218 (45%)
Query: 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFF---NMKYFEEKVQAGDWDEVEKYLSGFT 61
++E++ LI Q+L + +SV L ESG + + F E V GDW + + L
Sbjct: 97 NQEIIRLIGQYLHDVGLDKSVQTLMLESGCYLEHPSATKFREHVLMGDWSKADSDLKDLE 156
Query: 62 KVDDNRYSMKIF---FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQL 118
+ DN I F + +QKYLE LD + A+ +L ++L N +++
Sbjct: 157 PLIDNGKLATITEMKFILLEQKYLEHLDDGNPLDALHVLRSELTPLQ-HNITRVHQLSSY 215
Query: 119 LTLSNFRENEQLSKY-GDTKTARGIMLIELKKLIEANPLFRDKLAFPTLKSSRLRTLINQ 177
+ S ++ Q +K+ G +R +++ L+ + + + + RLRTL+ Q
Sbjct: 216 MMCSTNQDLYQRAKWEGKGILSRALVMERLQTFMPPSVMMSPR---------RLRTLLQQ 266
Query: 178 SLNWQHQLCK-NPRA---NPDIKTLFTDHTCSPPNGPL 211
++ Q Q C + A N + +L TDH C+ P+
Sbjct: 267 AVELQSQHCPCHDMAWETNLETVSLLTDHCCTTDGFPM 304
|
|
| ASPGD|ASPL0000032162 AN8468 [Emericella nidulans (taxid:162425)] | Back alignment and assigned GO terms |
|---|
Score = 192 (72.6 bits), Expect = 8.7e-11, P = 8.7e-11
Identities = 118/522 (22%), Positives = 219/522 (41%)
Query: 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG--RKLFNFEG--- 492
S+D Q S+ID++ +VN+ P +L +++ W +G K +F
Sbjct: 590 SDDTLQRSEIDSN--SVNE---HLPVELQYACRYWTQHMMQSWNPAGAVEKACSFLKKYF 644
Query: 493 -HEAPVYSICPHHKENIQFI--FSTAI----DGKIKAWLYDT----MGSR-VDYDAPGH- 539
H V SI E I+ I + I D ++ +LYD + +R + AP
Sbjct: 645 LHWMEVMSILGVMPEVIRAICRLQSGIQDDKDSELSKFLYDARRFVLNNRHLAETAPLQL 704
Query: 540 WCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596
+ + +++S +GS R+F+ S G S L + ++ ++T VV F
Sbjct: 705 YSSGLMFSPEGSITRRIFNYNLS--GWSQLPKVEQTWSAEQQTLENHLGPVESVV-FSPD 761
Query: 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656
++ D +K WD +L + D G + L FS +G LLA + DN +
Sbjct: 762 GKQLVSGSYDDTVKIWDPATGELLQTLDGHSG--TVESLAFSPDGKLLASGSYDNTIDLW 819
Query: 657 ANAIGLRSLRAVENPP---FEALRTPIEXXXXXXXXXXXXXXGTPANCKVERSSPVRPSP 713
+A G L+ E P + P A +++++
Sbjct: 820 DSATG-ELLQTFEGHPHSIWSVAFAPDGKELASASDDSTIKIWDLATGELQQTLDSHSQS 878
Query: 714 IILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ-N 772
+ + S +L+ S D++ KV N A G L G W ++ +
Sbjct: 879 V--RSVAFSPDGKLLAS-SSLDSTIKV-----WNPATGELQQSLEGRSG---WVKSVAFS 927
Query: 773 PSGKATASAVPQH----WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK-I 827
P GK AS ++ W P++G L+ + G + ++V +A S + + S++ I
Sbjct: 928 PDGKKLASGSEKNTVKLWNPATGELLQT-LEGHS--QSVRSVAFSPDGKQLASSSSDTTI 984
Query: 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887
L+N T ++ TF +AF P ++++ G++D+TI ++++ E++ L+ H
Sbjct: 985 KLWNSTTGELQQTFKGHDLWIRAVAFSPDGKHLVS-GSDDNTIKLWDLATSELQQSLEDH 1043
Query: 888 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929
+ + +AFS L SS D+ + +W T E ++++ H
Sbjct: 1044 SRSVHAVAFSPDDKQLASSSLDSTIKLWDSATGELQRTLEGH 1085
|
|
| MGI|MGI:1916794 Wdr5b "WD repeat domain 5B" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 150 (57.9 bits), Expect = 6.2e-14, Sum P(2) = 6.2e-14
Identities = 53/207 (25%), Positives = 94/207 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
++S V +SP+G ++ + LI ++ G+ D + H ++D+A++ + L
Sbjct: 41 AISSVKFSPNGEWLASSAADALIIIW---GAYDGNCKKTLYGHSLEISDVAWSSDSSRL- 96
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
V+ DDK +KVW++ SG+ L +GH V+ C + + I S + D +K W
Sbjct: 97 -VSASDDKTLKVWDMRSGKCLKTLKGHSDFVFC-CDFNPPS-NLIVSGSFDESVKIWEVK 153
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586
T A + + ++ +GS + S G S DG + W+ + G RT A
Sbjct: 154 TGKCLKTLSAHSDPISAVNFNCNGSLIVS-G-SYDGLCRI--WDAASGQCLRTLADEGNP 209
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + L D+ +K WD
Sbjct: 210 PVSFVKFSPNGKYILTATLDNTLKLWD 236
|
|
| POMBASE|SPAC343.04c SPAC343.04c "WD repeat protein, human WDR26 family, ubiquitin ligase complex subunit (predicted)" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 130 (50.8 bits), Expect = 1.2e-12, Sum P(3) = 1.2e-12
Identities = 40/136 (29%), Positives = 71/136 (52%)
Query: 7 ELVFLILQFLEEEKFKESVHKLEKESGFFF---NMKYFEEKVQAGDWDEVEKYLSGFTKV 63
E++ L+LQFL + + ES+ LEKE+G ++K ++ V GDW E S ++
Sbjct: 10 EVIHLLLQFLNDYGYDESLKALEKETGLVSETEDVKRLKQAVLQGDWITAEAAFS-IMQL 68
Query: 64 DDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSN 123
D + F ++KQ+ LE +A+ +L N + FN+E + ++ +L +N
Sbjct: 69 RDESKRKEAQFLLQKQRCLELARSGAICEAIYVLQNFES--TDFNKEKERLVSIILESNN 126
Query: 124 FRENEQLSK--YGDTK 137
NE ++K YG+T+
Sbjct: 127 KSNNELITKNGYGNTR 142
|
|
| WB|WBGene00006474 wdr-5.1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
|---|
Score = 166 (63.5 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 54/210 (25%), Positives = 95/210 (45%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
S+S +SP G Y+G + +++++ + + + H VND+A++ ++ C
Sbjct: 89 SISSAKFSPCGKYLGTSSADKTVKIWNM---DHMICERTLTGHKLGVNDIAWSSDSR--C 143
Query: 468 VVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VV+ DDK +K++E+ + R +GH Y C + + S + D ++ W
Sbjct: 144 VVSASDDKTLKIFEIVTSRMTKTLKGHNN--YVFCCNFNPQSSLVVSGSFDESVRIWDVK 201
Query: 527 TMGSRVDYDAPGHW--CTTMLYSADGSRLFSCGTSKDGDSFLVE-WNESEGTIKRTYAGF 583
T G + P H + + ++ DGS L + G S DG LV W+ + G +T
Sbjct: 202 T-GMCIK-TLPAHSDPVSAVSFNRDGS-LIASG-SYDG---LVRIWDTANGQCIKTLVDD 254
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
V+F + LA DS +K WD
Sbjct: 255 ENPPVAFVKFSPNGKYILASNLDSTLKLWD 284
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LRZ0 | TPR2_ARATH | No assigned EC number | 0.7276 | 0.9691 | 0.9434 | no | no |
| Q84JM4 | TPR3_ARATH | No assigned EC number | 0.7615 | 0.9854 | 0.9792 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1101 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-31 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-22 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-21 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 1e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-17 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 5e-16 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 6e-15 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-15 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 2e-14 | |
| smart00668 | 58 | smart00668, CTLH, C-terminal to LisH motif | 2e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-13 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 9e-10 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-09 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-06 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-05 | |
| smart00667 | 34 | smart00667, LisH, Lissencephaly type-1-like homolo | 3e-05 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 6e-05 | |
| PTZ00420 | 568 | PTZ00420, PTZ00420, coronin; Provisional | 9e-05 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 0.002 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 0.002 | |
| PTZ00421 | 493 | PTZ00421, PTZ00421, coronin; Provisional | 0.002 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 1e-31
Identities = 84/320 (26%), Positives = 125/320 (39%), Gaps = 46/320 (14%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H G V + F P + LL GS +G I K+WD+ L
Sbjct: 8 HTGG-VTCVAFSPDGK-LLATGSGDGTI----------------KVWDLETGELLRT--- 46
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
K V VA S DG Y+ + I+L+ +R + H V+ +AF+
Sbjct: 47 LKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTG---HTSYVSSVAFS- 102
Query: 462 PNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520
P+ + + + DK IKVW++ +G+ L GH V S+ F+ S++ DG I
Sbjct: 103 PDGRI-LSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDG--TFVASSSQDGTI 159
Query: 521 KAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
K W D + GH ++ +S DG +L S + DG L W+ S G
Sbjct: 160 KLW--DLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS--DGTIKL--WDLSTGKCLG 213
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---VNILTSTDAEGGLPNLPRL 635
T G N V F + ED I+ WD+ V L+ L
Sbjct: 214 TLRGHENGVNSVA-FSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNSVT-----SL 267
Query: 636 RFSKEGNLLAVTTADNGFKI 655
+S +G LA +AD +I
Sbjct: 268 AWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-22
Identities = 61/239 (25%), Positives = 93/239 (38%), Gaps = 39/239 (16%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L+ ++ H S V S+ F P + +L S + I K+
Sbjct: 78 WDLETGECVRTLTGHT-SYVSSVAFSPDGR-ILSSSSRDKTI----------------KV 119
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS-- 445
WD+ + + V+ VA+SPDG +V + I+L+ DLR
Sbjct: 120 WDVETGK---CLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLW------DLRTGKCV 170
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPH 503
+ H G VN +AF+ + L + D IK+W+LS K GHE V S+
Sbjct: 171 ATLTGHTGEVNSVAFSPDGEKLL--SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFS 228
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSK 560
+ + S + DG I+ W D GH T++ +S DG RL S
Sbjct: 229 PDGYL--LASGSEDGTIRVW--DLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADG 283
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 2e-21
Identities = 62/270 (22%), Positives = 101/270 (37%), Gaps = 23/270 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ---HSQIDAHVGAVNDLAFAYPNK 464
V+ VA+SPDG + I+++ LR H+ V A D +
Sbjct: 11 GVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY----- 65
Query: 465 LLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ + DK I++W+L +G + GH + V S+ + + + S++ D IK W
Sbjct: 66 ---LASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP--DGRILSSSSRDKTIKVW 120
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
D + GH + F +S+DG L W+ G T G
Sbjct: 121 --DVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL--WDLRTGKCVATLTGH 176
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643
+ N V F L+ D IK WD+ L + N + FS +G L
Sbjct: 177 TGEVNSV-AFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVN--SVAFSPDGYL 233
Query: 644 LAVTTADNGFKI--LANAIGLRSLRAVENP 671
LA + D ++ L +++L N
Sbjct: 234 LASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.8 bits (221), Expect = 1e-18
Identities = 91/379 (24%), Positives = 152/379 (40%), Gaps = 33/379 (8%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
++ S+ F P + LLL GSS+G I LW+L ++L+ S+
Sbjct: 66 DSITSIAFSPDGE-LLLSGSSDGTIKLWDLDNGEKLI-----------------KSLEGL 107
Query: 405 VPISVSRVAW-SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN 463
SVS++A SPDGN + +A + + + S + ++ H +V LAF P+
Sbjct: 108 HDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAF-SPD 166
Query: 464 KLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522
L D IK+W+L +G+ L GH PV S+ + S + DG I+
Sbjct: 167 GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA-SGSSDGTIRL 225
Query: 523 WLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKRTY 580
W T G + GH +S DGS L S D + W+ S ++ RT
Sbjct: 226 WDLST-GKLLRSTLSGHSDSVVSSFSPDGSLLASGS----SDGTIRLWDLRSSSSLLRTL 280
Query: 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640
+G V F + D ++ WD++ +L+S +G + L FS +
Sbjct: 281 SGHSSSVLS-VAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700
G+LL +D+G LR+ + ++ + + SS + GT
Sbjct: 340 GSLLVSGGSDDG---TIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRL 396
Query: 701 CKVERSSPVRPSPIILAEI 719
+ S +R + +
Sbjct: 397 WDLSTGSLLRNLDGHTSRV 415
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-17
Identities = 55/220 (25%), Positives = 87/220 (39%), Gaps = 26/220 (11%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELS-GRKLFNFEGHEAPVYSI-- 500
+ H G V +AF+ KLL T D IKVW+L G L +GH PV +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLL--ATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAA 59
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGT 558
++ S + D I+ L+D GH + +++ +S DG L S
Sbjct: 60 SADGT----YLASGSSDKTIR--LWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSS- 112
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVG-EDSQIKFWDMD 615
D + W+ G T G ++ V V F F+A +D IK WD+
Sbjct: 113 ---RDKTIKVWDVETGKCLTTLRG---HTDWVNSVAFSPD-GTFVASSSQDGTIKLWDLR 165
Query: 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + G + + FS +G L +++D K+
Sbjct: 166 TGKCVAT--LTGHTGEVNSVAFSPDGEKLLSSSSDGTIKL 203
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 82.1 bits (201), Expect = 5e-16
Identities = 81/344 (23%), Positives = 133/344 (38%), Gaps = 35/344 (10%)
Query: 289 PPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSLHQGST-- 346
TPG + H + + L +P + + SS T L DL +S G T
Sbjct: 141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDP 200
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
V S+ F P L+ GSS+G I LW+L+ L S
Sbjct: 201 VSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL------------------RSTLSGHS 242
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
SV ++SPDG+ + + I+L+ S+ L + + H +V +AF+ KLL
Sbjct: 243 DSVVS-SFSPDGSLLASGSSDGTIRLWDLRSSSSLLRT--LSGHSSSVLSVAFSPDGKLL 299
Query: 467 CVVTCGDDKLIKVWELSGRKL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523
+ D +++W+L KL +GHE PV S+ + + + DG I+ W
Sbjct: 300 --ASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLS-FSPDGSLLVSGGSDDGTIRLW 356
Query: 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583
T + ++ +S DG + S T D + W+ S G++ R G
Sbjct: 357 DLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGST----DGTVRLWDLSTGSLLRNLDGH 411
Query: 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
+ + F + D+ I+ WD+ S +G
Sbjct: 412 TSRVT-SLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSFSPDG 454
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 78.5 bits (194), Expect = 1e-15
Identities = 44/213 (20%), Positives = 90/213 (42%), Gaps = 18/213 (8%)
Query: 807 VPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 865
V C+A S + + + +G G I ++++ T +++ T +A D +A G+
Sbjct: 12 VTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASA-DGTYLASGS 70
Query: 866 EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 925
D TI ++++ E L GH ++ +AFS IL SS D + VW ++T + +
Sbjct: 71 SDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTT 130
Query: 926 VTIHIPAGKTPTGDTR-VQFNADQVRMLVV---HETQLAIYDASKMERIRQWTPQDALSA 981
+ H T V F V + + ++D + + T +
Sbjct: 131 LRGH-------TDWVNSVAF--SPDGTFVASSSQDGTIKLWDLRTGKCVATLT---GHTG 178
Query: 982 PISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1014
++ +S + + + ++ DG I ++D T +
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.6 bits (192), Expect = 6e-15
Identities = 93/460 (20%), Positives = 170/460 (36%), Gaps = 62/460 (13%)
Query: 473 DDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532
D L+ + +LS GHE + SI + + + S + DG IK W D +
Sbjct: 47 SDSLVSLPDLSSLL---LRGHEDSITSIA--FSPDGELLLSGSSDGTIKLWDLDNGEKLI 101
Query: 533 D--YDAPGHWCTTMLY-SADGSRLFSCGTSKDGDSFLVEWN-ESEGTIKRTYAGFRKKSN 588
+ + S DG+ + +S DG L W+ + G + RT G +
Sbjct: 102 KSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKL--WDLSTPGKLIRTLEGHSESVT 159
Query: 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648
+ + D IK WD+ L++ + L FS +G LL +
Sbjct: 160 SLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVS--SLAFSPDGGLLIASG 217
Query: 649 ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708
+ +G ++R + + LR+ + + S VSS +P + S
Sbjct: 218 SSDG-----------TIRLWDLSTGKLLRSTLSG-----HSDSVVSSFSPDGSLLASGSS 261
Query: 709 VRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 768
+ + S L T+ SS V+ + ++ L + S+G +LW
Sbjct: 262 DGTIRLWD---LRSSSSLLRTLSGH---SSSVLSVAFSPDGKLLASGSSDGTVRLWD--- 312
Query: 769 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG--GK 826
+ + + E V ++ S + S ++S G
Sbjct: 313 --------------------LETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGT 352
Query: 827 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 886
I L+++ T K + T + ++F P D +++ G+ D T+ ++++ + L G
Sbjct: 353 IRLWDLRTGKPLKTLEGHSNVLS-VSFSP-DGRVVSSGSTDGTVRLWDLSTGSLLRNLDG 410
Query: 887 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV 926
H R+T L FS L S +D + +W + T K S
Sbjct: 411 HTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSVSF 450
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.8 bits (190), Expect = 9e-15
Identities = 74/329 (22%), Positives = 123/329 (37%), Gaps = 38/329 (11%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W L + + +V S+ F P + L S +G I LW+L L
Sbjct: 139 WDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPL------- 191
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
S VS +A+SPDG + + I+L+ S S
Sbjct: 192 ------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDL--STGKLLRST 237
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL--SGRKLFNFEGHEAPVYSICPHH 504
+ H +V +F+ LL + D I++W+L S L GH + V S+
Sbjct: 238 LSGHSDSV-VSSFSPDGSLL--ASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSP 294
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDG 562
+ + S + DG ++ W +T GH +++ +S DGS L S G+
Sbjct: 295 DGKL--LASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSD--- 349
Query: 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622
D + W+ G +T + V F + D ++ WD+ ++L +
Sbjct: 350 DGTIRLWDLRTGKPLKTL--EGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRN 407
Query: 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADN 651
D + L FS +G LA ++DN
Sbjct: 408 LDGHTSR--VTSLDFSPDGKSLASGSSDN 434
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 2e-14
Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 2/114 (1%)
Query: 804 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 862
V +A S + ++S++ G I L+++ T K + T +AF P D ++A
Sbjct: 177 TGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-DGYLLA 235
Query: 863 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916
G+ED TI ++++R E L GH +T LA+S L S AD + +W
Sbjct: 236 SGSEDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|128914 smart00668, CTLH, C-terminal to LisH motif | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 2e-14
Identities = 21/56 (37%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Query: 34 FFFNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQD 89
F K E + GDWDE ++LS R S K+ FE+RKQK+LE + +
Sbjct: 1 EFDERKRIRELILKGDWDEALEWLSSLKPPLLERNS-KLEFELRKQKFLELVRQGK 55
|
Alpha-helical motif of unknown function. Length = 58 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.3 bits (183), Expect = 3e-14
Identities = 32/127 (25%), Positives = 62/127 (48%), Gaps = 2/127 (1%)
Query: 804 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 862
+ V +A S + ++V S++ G I L+++ T K + T +AF P D +
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSP-DGEKLL 193
Query: 863 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 922
+ D TI ++++ + L+GH+ + +AFS +L S D + VW + T E
Sbjct: 194 SSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC 253
Query: 923 RKSVTIH 929
++++ H
Sbjct: 254 VQTLSGH 260
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 70.8 bits (174), Expect = 5e-13
Identities = 50/260 (19%), Positives = 93/260 (35%), Gaps = 67/260 (25%)
Query: 804 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 862
V +A S + + S++ I ++++ T K +TT +AF P D +A
Sbjct: 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSP-DGTFVA 151
Query: 863 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 922
++D TI ++++R + + L GH + +AFS L+SS +D + +W + T
Sbjct: 152 SSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTG-- 209
Query: 923 RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP 982
+ L HE
Sbjct: 210 ------------------------KCLGTLRGHE------------------------NG 221
Query: 983 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQT-VYPLVVA 1041
++ +S + L+ + DG I V+D T L+G V +A
Sbjct: 222 VNSVAFSPDGYLLASGSEDGTIRVWDLRTGECV-----------QTLSGHTNSVT--SLA 268
Query: 1042 AHPLEPNQFAIGLTDGSVKV 1061
P + + A G DG++++
Sbjct: 269 WSP-DGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-10
Identities = 40/181 (22%), Positives = 74/181 (40%), Gaps = 27/181 (14%)
Query: 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 943
LKGH +T +AFS +L + D + VW ++T E +++ H V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG------PVRDVA 58
Query: 944 FNADQVRMLVVHE-TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002
+AD + + ++D E +R T ++ +S +S + +++ ++ D
Sbjct: 59 ASADGTYLASGSSDKTIRLWDLETGECVRTLTGH---TSYVSSVAFSPDGRILSSSSRDK 115
Query: 1003 NIGVFDADTLRLRCYIAPSTYLSPSVLNG-SQTVYPLVVAAHPLEPNQF-AIGLTDGSVK 1060
I V+D +T + + L G + V VA P F A DG++K
Sbjct: 116 TIKVWDVETGKCL-----------TTLRGHTDWVN--SVAFSP--DGTFVASSSQDGTIK 160
Query: 1061 V 1061
+
Sbjct: 161 L 161
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.9 bits (146), Expect = 2e-09
Identities = 50/282 (17%), Positives = 108/282 (38%), Gaps = 14/282 (4%)
Query: 813 SKNDSYVMSATGGKISLFNMMT-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 871
+ S+ G + L+++ T K++ T + T LAF P + + + D TI
Sbjct: 122 GNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181
Query: 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHI 930
++++R + S L GH ++ LAFS ++ S +D + +W + T + +S
Sbjct: 182 LWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTL--- 238
Query: 931 PAGKTPTGDTRVQFNADQVRMLVVHET-QLAIYDASKMERIRQWTPQDALSAPISCAVYS 989
+ F+ D + + ++D + + S+ + +S
Sbjct: 239 ---SGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH--SSSVLSVAFS 293
Query: 990 CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP-SVLNGSQTVYPLVVAAHPLEPN 1048
+ +L+ + DG + ++D +T +L + + P S L+ S LV +
Sbjct: 294 PDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGS--DDG 351
Query: 1049 QFAIGLTDGSVKVMEPSESEGKWGVSPPVDNGILNSRTTSSS 1090
+ + VS D +++S +T +
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGT 393
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 49.6 bits (119), Expect = 3e-06
Identities = 40/185 (21%), Positives = 66/185 (35%), Gaps = 30/185 (16%)
Query: 300 PDHEQLMKRLRPAPSAEEVTYSSSRHQT--WSLDDLPRTVAV-SLHQGSTVISMDFHPSH 356
H + + +P V SS W L + VA + H G V S+ F P
Sbjct: 132 RGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTG-KCVATLTGHTGE-VNSVAFSPD- 188
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
LL SS+G I LW+L+ +L + V+ VA+SP
Sbjct: 189 GEKLLSSSSDGTIKLWDLST------------GKCLGTLRGHEN-------GVNSVAFSP 229
Query: 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476
DG + I+++ + H +V LA++ + + D
Sbjct: 230 DGYLLASGSEDGTIRVWD---LRTGECVQTLSGHTNSVTSLAWS--PDGKRLASGSADGT 284
Query: 477 IKVWE 481
I++W+
Sbjct: 285 IRIWD 289
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.5 bits (119), Expect = 3e-06
Identities = 65/392 (16%), Positives = 135/392 (34%), Gaps = 29/392 (7%)
Query: 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
S G + F L+ D IK WD
Sbjct: 35 SSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSI-AFSPDGELLLSGSSDGTIKLWD 93
Query: 614 MDN-VNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVEN 670
+DN ++ S + S +GN LLA ++ D K+ + + +R +E
Sbjct: 94 LDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEG 153
Query: 671 PPFEALRTPIESVAL----KVSASSAVSSGTPANCKVERSSPVRP-----SPIILAEIVD 721
+ S+A K+ AS + GT + P+ P+
Sbjct: 154 HS-----ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSP 208
Query: 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 781
G + + S+D + ++ L + + L + + + + A+ S+
Sbjct: 209 DGGLLIAS--GSSDGTIRLWDL--STGKLLRSTLSGHSDSVVSSFSPDGSL---LASGSS 261
Query: 782 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMMT--FKVM 838
L + +V +A S + + S + G + L+++ T
Sbjct: 262 DGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSS 321
Query: 839 TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 898
T + L+F P + +++ G++D TI ++++R + L+GH + ++FS
Sbjct: 322 LTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP 380
Query: 899 SLNILVSSGADAQLCVWSIDTWEKRKSVTIHI 930
++ S D + +W + T +++ H
Sbjct: 381 DGRVVSSGSTDGTVRLWDLSTGSLLRNLDGHT 412
|
Length = 466 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 2e-05
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916
E+ LKGH +T +AFS L S D + +W
Sbjct: 3 ELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|128913 smart00667, LisH, Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 3e-05
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 4 LSRELVFLILQFLEEEKFKESVHKLEKESGF 34
EL LIL++L ++E+ L+KESG
Sbjct: 2 SRSELNRLILEYLLRNGYEETAETLQKESGL 32
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. Length = 34 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 40.8 bits (96), Expect = 6e-05
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916
++ LKGH +T +AFS N+L S D + VW
Sbjct: 2 KLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39
|
Length = 39 |
| >gnl|CDD|240412 PTZ00420, PTZ00420, coronin; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (109), Expect = 9e-05
Identities = 29/82 (35%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
Query: 851 LAFHPQDNNIIAIGTEDSTIHIYNVR-----VDEVKSK---LKGHQKRITGLAFS-TSLN 901
L F+P + I+A G+ED TI ++ + V E+K LKGH+K+I+ + ++ +
Sbjct: 80 LQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYY 139
Query: 902 ILVSSGADAQLCVWSIDTWEKR 923
I+ SSG D+ + +W I+ EKR
Sbjct: 140 IMCSSGFDSFVNIWDIEN-EKR 160
|
Length = 568 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 42.0 bits (97), Expect = 0.002
Identities = 38/221 (17%), Positives = 80/221 (36%), Gaps = 31/221 (14%)
Query: 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 907
S + ++ DS + + ++ L+GH+ IT +AFS +L+S
Sbjct: 29 SLLSLGSSESGILLLALLSDSLVSLPDLS----SLLLRGHEDSITSIAFSPDGELLLSGS 84
Query: 908 ADAQLCVWSID-------TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 960
+D + +W +D + E ++ A +P G++ + ++ + + +
Sbjct: 85 SDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLS-- 142
Query: 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020
+ + IR + S A L + DG I ++D T + +A
Sbjct: 143 ----TPGKLIRTLEGHS--ESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG 196
Query: 1021 STYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1061
T +A P A G +DG++++
Sbjct: 197 HTD------------PVSSLAFSPDGGLLIASGSSDGTIRL 225
|
Length = 466 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 36.6 bits (85), Expect = 0.002
Identities = 11/34 (32%), Positives = 17/34 (50%), Gaps = 2/34 (5%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
+ H G V +AF+ LL + DD ++VW
Sbjct: 7 LKGHTGPVTSVAFSPDGNLL--ASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|173611 PTZ00421, PTZ00421, coronin; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (98), Expect = 0.002
Identities = 22/77 (28%), Positives = 41/77 (53%), Gaps = 8/77 (10%)
Query: 851 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-------KLKGHQKRITGLAFSTS-LNI 902
+AF+P D + +ED TI + + + + L+GH K++ ++F S +N+
Sbjct: 81 VAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNV 140
Query: 903 LVSSGADAQLCVWSIDT 919
L S+GAD + VW ++
Sbjct: 141 LASAGADMVVNVWDVER 157
|
Length = 493 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1101 | |||
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 100.0 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 100.0 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 100.0 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 100.0 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 100.0 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 100.0 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 100.0 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 100.0 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 100.0 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 100.0 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 100.0 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.98 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.98 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.98 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.98 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.97 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.97 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.97 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.97 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.97 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.97 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.97 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.96 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.96 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.96 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.96 | |
| PTZ00421 | 493 | coronin; Provisional | 99.96 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.96 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.95 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.95 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.95 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.95 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.95 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.95 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.95 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.95 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.94 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.94 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.94 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.94 | |
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.94 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.94 | |
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.94 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.94 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.93 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.93 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.93 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.93 | |
| PTZ00420 | 568 | coronin; Provisional | 99.93 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.93 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.93 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.92 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.92 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.92 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.92 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.91 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.91 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.91 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.91 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.9 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.9 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.9 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.89 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.89 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.89 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.89 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.89 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.88 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.87 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.86 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.86 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.86 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.85 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.85 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.85 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.85 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.85 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.85 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.84 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.84 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.84 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.83 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.82 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.82 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.82 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.82 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.81 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.81 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.81 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.81 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.8 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.8 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.79 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.78 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.77 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.77 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.75 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.74 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.74 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.74 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.73 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.72 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.72 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.72 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.71 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.71 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.7 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.7 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.69 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.69 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.68 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.68 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.68 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.67 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 99.66 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.66 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.66 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.66 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.65 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.64 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.64 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.63 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.63 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.63 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.62 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.61 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.61 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.59 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.59 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.58 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.58 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.58 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.57 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 99.56 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.55 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.55 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.55 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.54 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.54 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.54 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.54 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.54 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.52 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.52 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.51 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.51 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.51 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.5 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 99.49 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.48 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.47 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.46 | |
| KOG2659 | 228 | consensus LisH motif-containing protein [Cytoskele | 99.45 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.45 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.44 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 99.44 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.44 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.43 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.4 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.4 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 99.39 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.37 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.37 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.37 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.37 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.37 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 99.37 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.36 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.36 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 99.36 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.36 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.35 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.35 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.33 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.33 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.31 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.23 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.23 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.21 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 99.2 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 99.19 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 99.11 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 99.09 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.07 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.99 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.99 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.98 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.98 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.98 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.9 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.9 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.89 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.88 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.88 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.86 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.85 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.84 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.83 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.82 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.8 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.79 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.77 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.77 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.76 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.75 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.7 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.69 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.67 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.64 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.63 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.59 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.59 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.59 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.59 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.56 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.56 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.55 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.54 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 98.54 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.54 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.53 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 98.52 | |
| KOG0396 | 389 | consensus Uncharacterized conserved protein [Funct | 98.52 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.5 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 98.5 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.49 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.48 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.45 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 98.42 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.41 | |
| PF10607 | 145 | CLTH: CTLH/CRA C-terminal to LisH motif domain; In | 98.41 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.39 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.38 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 98.37 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.36 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 98.35 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 98.34 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 98.3 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.28 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 98.27 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.22 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 98.21 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 98.2 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.19 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.1 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 98.1 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 98.09 | |
| PF08513 | 27 | LisH: LisH; InterPro: IPR013720 The LisH motif is | 98.07 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 98.05 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 98.03 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 98.01 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 98.0 | |
| smart00668 | 58 | CTLH C-terminal to LisH motif. Alpha-helical motif | 97.97 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.96 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.96 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.91 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.91 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.89 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 97.88 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.88 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.84 | |
| smart00667 | 34 | LisH Lissencephaly type-1-like homology motif. Alp | 97.83 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.82 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.81 | |
| KOG2817 | 394 | consensus Predicted E3 ubiquitin ligase [Posttrans | 97.81 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.76 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 97.72 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.64 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.6 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.57 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.56 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.55 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.53 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.5 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 97.49 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.48 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 97.45 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 97.43 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.41 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 97.39 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.29 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.23 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 97.2 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.2 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.09 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 97.07 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 97.05 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 97.01 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.99 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 96.94 | |
| PRK10115 | 686 | protease 2; Provisional | 96.9 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.89 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 96.88 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.87 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 96.77 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 96.76 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.66 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.61 | |
| PRK10115 | 686 | protease 2; Provisional | 96.61 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.57 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 96.56 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.56 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.52 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 96.45 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 96.44 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.44 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.37 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 96.22 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 96.2 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 96.15 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 96.11 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.1 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 96.02 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 96.01 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.97 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 95.87 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.76 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 95.73 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 95.72 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.72 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.71 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 95.7 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.64 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 95.58 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.57 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 95.32 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 95.29 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 95.08 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 94.85 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.8 | |
| KOG4659 | 1899 | consensus Uncharacterized conserved protein (Rhs f | 94.77 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.66 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 94.65 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 94.65 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 94.62 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 94.62 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 94.58 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 94.53 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 94.48 | |
| COG4257 | 353 | Vgb Streptogramin lyase [Defense mechanisms] | 94.38 | |
| PHA03098 | 534 | kelch-like protein; Provisional | 94.37 | |
| cd08044 | 133 | TAF5_NTD2 TAF5_NTD2 is the second conserved N-term | 94.23 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 94.04 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 94.02 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.97 | |
| PF04494 | 142 | TFIID_90kDa: WD40 associated region in TFIID subun | 93.79 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 93.73 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 93.55 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 93.51 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 93.4 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 93.24 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 93.21 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 93.14 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 93.1 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 92.98 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 92.89 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 92.52 | |
| KOG1916 | 1283 | consensus Nuclear protein, contains WD40 repeats [ | 92.47 | |
| PF10433 | 504 | MMS1_N: Mono-functional DNA-alkylating methyl meth | 92.46 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 92.3 | |
| KOG2247 | 615 | consensus WD40 repeat-containing protein [General | 92.08 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 92.07 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 91.93 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 91.57 | |
| KOG4460 | 741 | consensus Nuclear pore complex, Nup88/rNup84 compo | 91.47 | |
| PF11725 | 1774 | AvrE: Pathogenicity factor; InterPro: IPR021085 Th | 91.27 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 91.25 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 90.86 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 90.51 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 90.5 | |
| PF07676 | 39 | PD40: WD40-like Beta Propeller Repeat; InterPro: I | 90.41 | |
| COG3292 | 671 | Predicted periplasmic ligand-binding sensor domain | 90.28 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 90.15 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 90.1 | |
| PF03022 | 287 | MRJP: Major royal jelly protein; InterPro: IPR0035 | 90.04 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 89.96 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 89.79 | |
| PF12657 | 173 | TFIIIC_delta: Transcription factor IIIC subunit de | 89.62 | |
| PF13449 | 326 | Phytase-like: Esterase-like activity of phytase | 88.74 | |
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 88.74 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 88.45 | |
| PLN02153 | 341 | epithiospecifier protein | 88.34 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 88.21 | |
| COG3823 | 262 | Glutamine cyclotransferase [Posttranslational modi | 88.08 | |
| smart00036 | 302 | CNH Domain found in NIK1-like kinases, mouse citro | 87.91 | |
| KOG1900 | 1311 | consensus Nuclear pore complex, Nup155 component ( | 87.38 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 87.03 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 86.85 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 86.76 | |
| COG1770 | 682 | PtrB Protease II [Amino acid transport and metabol | 86.57 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 86.44 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 86.31 | |
| TIGR03606 | 454 | non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH | 86.07 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 85.87 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 85.66 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 85.53 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 84.6 | |
| KOG1983 | 993 | consensus Tomosyn and related SNARE-interacting pr | 84.5 | |
| PLN02193 | 470 | nitrile-specifier protein | 84.49 | |
| KOG2377 | 657 | consensus Uncharacterized conserved protein [Funct | 84.37 | |
| PLN02153 | 341 | epithiospecifier protein | 84.36 | |
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 84.05 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 83.97 | |
| PF08801 | 422 | Nucleoporin_N: Nup133 N terminal like; InterPro: I | 83.47 | |
| TIGR03548 | 323 | mutarot_permut cyclically-permuted mutatrotase fam | 82.67 |
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-72 Score=555.47 Aligned_cols=490 Identities=22% Similarity=0.314 Sum_probs=417.2
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC---HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN---MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKY 81 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~ 81 (1101)
+-|++|++.|+|+.+||.+|+.+||.|+|+.+. ...|.++++.|+|++++..+..+....+.. ...+.|++.+|+|
T Consensus 17 k~efi~il~q~l~slgy~~S~~~lE~es~ll~~tat~klf~q~vlqg~w~q~v~~~~~i~~~de~~-~~ea~fLv~kQ~f 95 (519)
T KOG0293|consen 17 KGEFIRILWQILYSLGYDHSSPLLEWESGLLIPTATTKLFDQQVLQGQWDQQVMSLVRISFEDERN-RKEAMFLVNKQIF 95 (519)
T ss_pred cchhhHhHHHHHHhcCccccchhhHHhhCcccccchHHHHHHHHHcccHHHHHHHHhhccCcchhh-hHHHHHHHHHHHH
Confidence 459999999999999999999999999999885 999999999999999999999885444333 4459999999999
Q ss_pred HHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCc-cccccccccCCchHHHHHHHHHHHhhcccCcccccc
Q 001319 82 LEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNF-RENEQLSKYGDTKTARGIMLIELKKLIEANPLFRDK 160 (1101)
Q Consensus 82 lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~ 160 (1101)
||++..|.+.+|+.+||++..++ .++.+++++|+.-+..++. ..++.- .-......|..|+++|+++|||++|
T Consensus 96 LEf~k~~~is~al~~l~~~~~~l-r~~~kk~~el~~sll~sn~~~~ne~~-~~~~~~n~R~~ll~elskyi~p~il---- 169 (519)
T KOG0293|consen 96 LEFLKTGSISHALPVLRNPVLYL-RKNKKKFHELASSLLVSNDQFSNEEN-TTAQLNNERDKLLDELSKYIPPNIL---- 169 (519)
T ss_pred HHHHhhccHhhhhHhhhcchhhh-hhhHHHHHHHHHHHhccccccccccc-hhhhhchhHHHHHHHHHhhCCHhhc----
Confidence 99999999999999999999998 7899999999887765433 333332 1222456899999999999999998
Q ss_pred cCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCCC
Q 001319 161 LAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPFPP 240 (1101)
Q Consensus 161 ~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 240 (1101)
+|++||++||+||++||++.|+||| ..+..|||.||.|.+.+ +|. ++.+++.+|++
T Consensus 170 -----lP~rRLehLl~qAv~~Q~d~cvyhn-sldsvsll~Dh~c~~~q--------------ip~-qt~qil~~htd--- 225 (519)
T KOG0293|consen 170 -----LPKRRLEHLLEQAVKYQRDSCVYHN-SLDSVSLLSDHFCGRLQ--------------IPS-QTWQILQDHTD--- 225 (519)
T ss_pred -----CChHHHHHHHHHHHHHHHhHhHHhc-ccchhhhhhhcccCccc--------------CCc-hhhhhHhhCCC---
Confidence 9999999999999999999999999 47779999999999966 777 55665555555
Q ss_pred CccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCccccCCCChHHHhhhcCCCCCCcceee
Q 001319 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTY 320 (1101)
Q Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 320 (1101)
T Consensus 226 -------------------------------------------------------------------------------- 225 (519)
T KOG0293|consen 226 -------------------------------------------------------------------------------- 225 (519)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCccccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 321 SSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 321 ~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+||-+.||++|+| ||++++|.+..||++.....+. ..+
T Consensus 226 -------------------------EVWfl~FS~nGky-LAsaSkD~Taiiw~v~~d~~~k----------------l~~ 263 (519)
T KOG0293|consen 226 -------------------------EVWFLQFSHNGKY-LASASKDSTAIIWIVVYDVHFK----------------LKK 263 (519)
T ss_pred -------------------------cEEEEEEcCCCee-EeeccCCceEEEEEEecCccee----------------eee
Confidence 6666667888996 5999999999999987644322 124
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
++.+|..+|..+.||||.+||++|+.|..+++||+.+|+...... .+|...+.+++|.|||. .+++|+.|+++..|
T Consensus 264 tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~--~~~~~S~~sc~W~pDg~--~~V~Gs~dr~i~~w 339 (519)
T KOG0293|consen 264 TLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYP--SGLGFSVSSCAWCPDGF--RFVTGSPDRTIIMW 339 (519)
T ss_pred eeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcc--cCcCCCcceeEEccCCc--eeEecCCCCcEEEe
Confidence 689999999999999999999999999999999999999876432 24678999999999999 69999999999999
Q ss_pred EcCCceeEEeecCCc-CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 ELSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d~~~~~~~~~~~h~~-~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
|.+|+.+..+++-.. .|.++++++ ||+++++.+.|..|++++.++..... +.....+|+++++|.||+++++.-.
T Consensus 340 dlDgn~~~~W~gvr~~~v~dlait~--Dgk~vl~v~~d~~i~l~~~e~~~dr~-lise~~~its~~iS~d~k~~LvnL~- 415 (519)
T KOG0293|consen 340 DLDGNILGNWEGVRDPKVHDLAITY--DGKYVLLVTVDKKIRLYNREARVDRG-LISEEQPITSFSISKDGKLALVNLQ- 415 (519)
T ss_pred cCCcchhhcccccccceeEEEEEcC--CCcEEEEEecccceeeechhhhhhhc-cccccCceeEEEEcCCCcEEEEEcc-
Confidence 999999888887653 589999876 77999999999999999987766554 3345668999999999999998875
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcc-eEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKS-NGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~-v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
+..+++||++..+.++.+.||.... +-.-||.. +..++++|++|++|+||+..+++++..+.+|.. .|++++|
T Consensus 416 ---~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~--~vNcVsw 490 (519)
T KOG0293|consen 416 ---DQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSK--TVNCVSW 490 (519)
T ss_pred ---cCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcc--eeeEEec
Confidence 8889999999999999999998743 22245554 457899999999999999999999999998765 8999999
Q ss_pred ec-CCCEEEEEEcCCcEEEEEccc
Q 001319 638 SK-EGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 638 s~-~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
+| +..++|++++||+|+||....
T Consensus 491 NP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 491 NPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred CCCCHHHhhccCCCCeEEEecCCc
Confidence 99 667999999999999997653
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-58 Score=439.61 Aligned_cols=487 Identities=21% Similarity=0.333 Sum_probs=400.3
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC----HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQK 80 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~ 80 (1101)
..+|+|||.|||+|..++++.++|++|++++++ ++.|.+.|.+|+||.++..+++| .+|+ +-+..+|+|.
T Consensus 7 ssdVIrli~QflKE~~L~rtl~tLQeEt~VSLNTVDSvd~Fv~dI~sG~WD~VL~~vqsL-KLP~-----kkL~dLYEqi 80 (508)
T KOG0275|consen 7 SSDVIRLIEQFLKENSLHRTLQTLQEETNVSLNTVDSVDGFVNDINSGHWDTVLKTVQSL-KLPD-----KKLIDLYEQI 80 (508)
T ss_pred cchHHHHHHHHHhhhhHHHHHHHHHHhhccceeechhHHHHHHhcccCchHHHHHHHHhc-cCch-----hHHHHHHHHH
Confidence 458999999999999999999999999999997 89999999999999999999999 4443 3678899999
Q ss_pred HHHHHccCCHHHHHHHHHhh--cccccccCHHHHHHHHHhhcccCccccccccccCCchHHHHHHHHHHHhhcccCcccc
Q 001319 81 YLEALDRQDKAKAVDILVND--LKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGDTKTARGIMLIELKKLIEANPLFR 158 (1101)
Q Consensus 81 ~lell~~~~~~~a~~~l~~~--l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~ 158 (1101)
.|||+|.++...|..+||+- +.-++..+|++|-+|..+|..+.|+..+.... ...++.|..+.+.|...+.-
T Consensus 81 vlEliELREL~tAR~~lRQTdpM~~lKQ~~peRy~~lE~ll~R~YFDp~EaY~d-ssKEkrRa~IAQ~ls~EV~V----- 154 (508)
T KOG0275|consen 81 VLELIELRELGTARSLLRQTDPMIMLKQIQPERYIRLENLLNRSYFDPREAYGD-SSKEKRRAVIAQALSGEVHV----- 154 (508)
T ss_pred HHHHHHHHhhhHHHHHHhccCceehhhccChHHHHHHHHHhcccccChhhhcCc-chHHHHHHHHHHHhcCceEE-----
Confidence 99999999999999999973 55567889999999999999999988777432 22445567777777766555
Q ss_pred cccCCCCCChHHHHHHHHHHHHHHHhcCCCCCCCCCcccccccccCCCCCCCCCCCCCCCCcccCCCCCCCCCCCCCCCC
Q 001319 159 DKLAFPTLKSSRLRTLINQSLNWQHQLCKNPRANPDIKTLFTDHTCSPPNGPLAPTPVNLPVAAVAKPASYASLGTHSPF 238 (1101)
Q Consensus 159 ~~~~~~~~p~~rL~~ll~qa~~~q~~~c~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 238 (1101)
+||+||..||.||++||..+- .+|++.+++ .|
T Consensus 155 -------VppSRLlaLlGQaLKWQqHQG-----------------------------------LLPPGt~iD------LF 186 (508)
T KOG0275|consen 155 -------VPPSRLLALLGQALKWQQHQG-----------------------------------LLPPGTTID------LF 186 (508)
T ss_pred -------cChHHHHHHHHHHhhhHhhcC-----------------------------------CCCCCceee------ec
Confidence 999999999999999998843 344444443 45
Q ss_pred CCCccccchhhhhhhhccCCCCcccccccccCCCCCCCCCccccccCCCCCCCCCccccCCCChHHHhhhcCCCCCCcce
Q 001319 239 PPTAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEV 318 (1101)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 318 (1101)
++..+ .+ ... +
T Consensus 187 RGkAA-~K----------------------------------------------------~~~-E--------------- 197 (508)
T KOG0275|consen 187 RGKAA-MK----------------------------------------------------DQE-E--------------- 197 (508)
T ss_pred cchhh-hh----------------------------------------------------hhH-h---------------
Confidence 55521 00 000 0
Q ss_pred eecCCCccccccCCCCccee--EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcc
Q 001319 319 TYSSSRHQTWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396 (1101)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~--~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~ 396 (1101)
+..|..+. ..++.++.+.|..|||||+| |++|+.||.|.+||+.+|+.....+++.-
T Consensus 198 ------------e~~Pt~l~r~IKFg~KSh~EcA~FSPDgqy-LvsgSvDGFiEVWny~~GKlrKDLkYQAq-------- 256 (508)
T KOG0275|consen 198 ------------ERYPTQLARSIKFGQKSHVECARFSPDGQY-LVSGSVDGFIEVWNYTTGKLRKDLKYQAQ-------- 256 (508)
T ss_pred ------------hhchHHhhhheecccccchhheeeCCCCce-Eeeccccceeeeehhccchhhhhhhhhhh--------
Confidence 01111222 22456778999999999996 58999999999999999998765444321
Q ss_pred ccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce
Q 001319 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1101)
Q Consensus 397 ~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~ 476 (1101)
..+-.+..+|.|+.||.|...||+|+.||.|+||.+.+|.|++.+. +.|+..|+|+.|+.|+. -+++++.|.+
T Consensus 257 ---d~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFd--rAHtkGvt~l~FSrD~S--qiLS~sfD~t 329 (508)
T KOG0275|consen 257 ---DNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFD--RAHTKGVTCLSFSRDNS--QILSASFDQT 329 (508)
T ss_pred ---cceeecccceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhh--hhhccCeeEEEEccCcc--hhhcccccce
Confidence 2366689999999999999999999999999999999999999543 38999999999999999 6999999999
Q ss_pred EEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC--CceEEEEEccC-CCE
Q 001319 477 IKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSAD-GSR 552 (1101)
Q Consensus 477 v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~d-~~~ 552 (1101)
+++.- .+|+++..++||+..|+...|.+ ||..+++++.||+|++|+..+.++..++...+ -+|.++..-|. ...
T Consensus 330 vRiHGlKSGK~LKEfrGHsSyvn~a~ft~--dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh 407 (508)
T KOG0275|consen 330 VRIHGLKSGKCLKEFRGHSSYVNEATFTD--DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEH 407 (508)
T ss_pred EEEeccccchhHHHhcCccccccceEEcC--CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCce
Confidence 99999 99999999999999999999966 77899999999999999999999887766544 36777777664 456
Q ss_pred EEEeecCCCCCceEEEEeCCCCeeEEEecccC--CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCC
Q 001319 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+++|.. .++|++-++. |+.++.|.... ++..-+.+.+|.|.++++.++|+.++.|...+|++..++..+..
T Consensus 408 ~iVCNr----sntv~imn~q-GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEk-- 480 (508)
T KOG0275|consen 408 FIVCNR----SNTVYIMNMQ-GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEK-- 480 (508)
T ss_pred EEEEcC----CCeEEEEecc-ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccc--
Confidence 777754 7788888864 77777776432 23455678999999999999999999999999999999988865
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
.|..++-+|..+.+++-+.||.+++|.
T Consensus 481 dvIGl~HHPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCcccchhhhhcccchhhhcC
Confidence 688999999999999999999999994
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-56 Score=474.57 Aligned_cols=573 Identities=15% Similarity=0.235 Sum_probs=477.3
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCcee-ccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCC
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~ 428 (1101)
++||++|+. |++... ..|.+-|+.+++.. .. .-......+++++.+||+++|++++..+
T Consensus 25 ~~~s~nG~~-L~t~~~-d~Vi~idv~t~~~~l~s------------------~~~ed~d~ita~~l~~d~~~L~~a~rs~ 84 (775)
T KOG0319|consen 25 VAWSSNGQH-LYTACG-DRVIIIDVATGSIALPS------------------GSNEDEDEITALALTPDEEVLVTASRSQ 84 (775)
T ss_pred eeECCCCCE-EEEecC-ceEEEEEccCCceeccc------------------CCccchhhhheeeecCCccEEEEeeccc
Confidence 899999995 566544 36889999998763 21 1334577899999999999999999999
Q ss_pred eEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCC
Q 001319 429 LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1101)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~ 506 (1101)
.+++|++.+|+.++ .++. |++||.-++|+|.+. ++++|+.|+.++||| ..+.+...|+||.+.|.++.|+|..
T Consensus 85 llrv~~L~tgk~ir---swKa~He~Pvi~ma~~~~g~--LlAtggaD~~v~VWdi~~~~~th~fkG~gGvVssl~F~~~~ 159 (775)
T KOG0319|consen 85 LLRVWSLPTGKLIR---SWKAIHEAPVITMAFDPTGT--LLATGGADGRVKVWDIKNGYCTHSFKGHGGVVSSLLFHPHW 159 (775)
T ss_pred eEEEEEcccchHhH---hHhhccCCCeEEEEEcCCCc--eEEeccccceEEEEEeeCCEEEEEecCCCceEEEEEeCCcc
Confidence 99999999998888 5666 999999999999997 899999999999999 8899999999999999999999988
Q ss_pred CccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~ 585 (1101)
+...|++|..|+++++||+.+... ......|...|++++|++|+..++++++ |..+.+||+.+-+..++++...
T Consensus 160 ~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vtsL~~~~d~~~~ls~~R----Dkvi~vwd~~~~~~l~~lp~ye- 234 (775)
T KOG0319|consen 160 NRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTSLAFSEDSLELLSVGR----DKVIIVWDLVQYKKLKTLPLYE- 234 (775)
T ss_pred chhheeecCCCceEEEEEcccCchHHHHHHhhhhheeeeeeccCCceEEEecc----CcEEEEeehhhhhhhheechhh-
Confidence 878899999999999999986554 6778889999999999999999999986 8899999998877777776554
Q ss_pred cceEEEEEeCC-----CCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 586 KSNGVVQFDTT-----QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 586 ~~v~~~~~~~~-----~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
.+..+.+-++ +.+++++|.+|.+++||.++++.+....... ...+..+...+....++..+.|..+.++|.++
T Consensus 235 -~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~-~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~ 312 (775)
T KOG0319|consen 235 -SLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD-SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDE 312 (775)
T ss_pred -heeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC-chhhhcceeccccCceEEEEccceEEEEEccc
Confidence 3666777666 6799999999999999999998877665443 22366666666666777778889999998776
Q ss_pred cccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccE
Q 001319 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKV 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 740 (1101)
. ...+.+.+ ....|
T Consensus 313 l-~i~k~ivG-----------------------------------------------------------------~ndEI 326 (775)
T KOG0319|consen 313 L-TIVKQIVG-----------------------------------------------------------------YNDEI 326 (775)
T ss_pred c-EEehhhcC-----------------------------------------------------------------Cchhh
Confidence 6 34433333 34455
Q ss_pred EEEEee-cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeE
Q 001319 741 VRLLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 819 (1101)
Q Consensus 741 ~~~~~s-~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 819 (1101)
..+.|- |+.+.+++++..+.+++|+..+... . .+. +|.+.|.++....+|-+|
T Consensus 327 ~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c--------------------~----ii~--GH~e~vlSL~~~~~g~ll 380 (775)
T KOG0319|consen 327 LDMKFLGPEESHLAVATNSPELRLYTLPTSYC--------------------Q----IIP--GHTEAVLSLDVWSSGDLL 380 (775)
T ss_pred eeeeecCCccceEEEEeCCCceEEEecCCCce--------------------E----EEe--CchhheeeeeecccCcEE
Confidence 555553 5667788888889999997653211 0 122 499999999988888999
Q ss_pred EEEc-CCeEEEEECCCce----EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-----E----Eeec
Q 001319 820 MSAT-GGKISLFNMMTFK----VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-----K----SKLK 885 (1101)
Q Consensus 820 a~~~-dg~i~vwd~~~~~----~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-----~----~~~~ 885 (1101)
++++ |.++++|.++++. ++....+|.+.|.+++++.....++++++.|+++++|++...+. + ....
T Consensus 381 at~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~ 460 (775)
T KOG0319|consen 381 ATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTER 460 (775)
T ss_pred EEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHH
Confidence 9999 9999999884433 45567789999999999986778999999999999999986321 1 1235
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEc
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDA 964 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~ 964 (1101)
.|...|++++++|+.+++||||.|++.++|++.... ....+.||. .++.++.|+|....++++ .|++|+||.+
T Consensus 461 aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~-----l~~vLsGH~-RGvw~V~Fs~~dq~laT~SgD~TvKIW~i 534 (775)
T KOG0319|consen 461 AHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLR-----LLGVLSGHT-RGVWCVSFSKNDQLLATCSGDKTVKIWSI 534 (775)
T ss_pred hhcccccceEecCCCceEEecccccceeeecccCce-----EEEEeeCCc-cceEEEEeccccceeEeccCCceEEEEEe
Confidence 799999999999999999999999999999999543 455667777 899999999999999995 5999999999
Q ss_pred CCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEec
Q 001319 965 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1044 (1101)
Q Consensus 965 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p 1044 (1101)
+++.++.++.+| ...|..+.|-.+|+.|++++.||-|++|+++++++.+.+.. |.+.+ .+++-+|
T Consensus 535 s~fSClkT~eGH---~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~----------H~Drv--WaL~~~~ 599 (775)
T KOG0319|consen 535 STFSCLKTFEGH---TSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDA----------HNDRV--WALSVSP 599 (775)
T ss_pred ccceeeeeecCc---cceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhh----------cccee--EEEeecC
Confidence 999999999887 89999999999999999999999999999999999998874 66655 5777778
Q ss_pred CCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1045 LEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1045 ~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
...+++||+.||.|.+|.=.|.+
T Consensus 600 -~~~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 600 -LLDMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred -ccceeEecCCCeEEEEeecCcHH
Confidence 57799999999999999866544
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=457.82 Aligned_cols=540 Identities=16% Similarity=0.232 Sum_probs=450.0
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccccc-CCccEEEEEEccCCCEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD-VPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-h~~~v~~~~~spdg~~l 421 (1101)
..+.+++++.+||+.+ |++++..+.+++|++.+++.+.. ++. |+++|.-++|+|.|..|
T Consensus 61 d~d~ita~~l~~d~~~-L~~a~rs~llrv~~L~tgk~irs-------------------wKa~He~Pvi~ma~~~~g~Ll 120 (775)
T KOG0319|consen 61 DEDEITALALTPDEEV-LVTASRSQLLRVWSLPTGKLIRS-------------------WKAIHEAPVITMAFDPTGTLL 120 (775)
T ss_pred chhhhheeeecCCccE-EEEeeccceEEEEEcccchHhHh-------------------HhhccCCCeEEEEEcCCCceE
Confidence 4578999999999985 57888999999999999987653 555 99999999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc-eeEEeecCCcCeEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLFNFEGHEAPVYS 499 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~-~~~~~~~h~~~v~~ 499 (1101)
|+|+.|+.|+|||+..+.+.. .++||.+.|.++.|.|+-.+.+|++|..|+++++|| .+.. ++..+..|.+.|++
T Consensus 121 AtggaD~~v~VWdi~~~~~th---~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~tcl~~~~~H~S~vts 197 (775)
T KOG0319|consen 121 ATGGADGRVKVWDIKNGYCTH---SFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRTCLHTMILHKSAVTS 197 (775)
T ss_pred EeccccceEEEEEeeCCEEEE---EecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCchHHHHHHhhhhheee
Confidence 999999999999999998877 789999999999999998766899999999999999 5343 58889999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC-----CCEEEEeecCCCCCceEEEEeCCCC
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
+++.+ |+..+++++.|..+.+||+...+....+.. ...+.++.+-++ |.++++.|. ++.+++||.+++
T Consensus 198 L~~~~--d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~-ye~~E~vv~l~~~~~~~~~~~~TaG~----~g~~~~~d~es~ 270 (775)
T KOG0319|consen 198 LAFSE--DSLELLSVGRDKVIIVWDLVQYKKLKTLPL-YESLESVVRLREELGGKGEYIITAGG----SGVVQYWDSESG 270 (775)
T ss_pred eeecc--CCceEEEeccCcEEEEeehhhhhhhheech-hhheeeEEEechhcCCcceEEEEecC----CceEEEEecccc
Confidence 99977 567899999999999999966555444332 224666777666 678998885 999999999999
Q ss_pred eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE-ecCCCEEEEEEcCCcE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGF 653 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-s~~g~~l~~~~~d~~i 653 (1101)
++...........+..+...+....++....|..+.++|.++.+....+-+... .|.++.| .|+.++|++++..+.+
T Consensus 271 ~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~nd--EI~Dm~~lG~e~~~laVATNs~~l 348 (775)
T KOG0319|consen 271 KCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYND--EILDMKFLGPEESHLAVATNSPEL 348 (775)
T ss_pred hhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCch--hheeeeecCCccceEEEEeCCCce
Confidence 887766554333455555656667788888899999999999998888765543 6888876 5678999999999999
Q ss_pred EEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCC
Q 001319 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPES 733 (1101)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 733 (1101)
++|+..+.. +. .+
T Consensus 349 r~y~~~~~~-c~-ii----------------------------------------------------------------- 361 (775)
T KOG0319|consen 349 RLYTLPTSY-CQ-II----------------------------------------------------------------- 361 (775)
T ss_pred EEEecCCCc-eE-EE-----------------------------------------------------------------
Confidence 999766541 10 11
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
.+|...|.++....+|..|++++.|.++++|.++.+.. ..... ....+|...|.+++++
T Consensus 362 ~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~-------------------~~~~~--a~~~gH~~svgava~~ 420 (775)
T KOG0319|consen 362 PGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCS-------------------KSLCV--AQANGHTNSVGAVAGS 420 (775)
T ss_pred eCchhheeeeeecccCcEEEEecCCceEEEEEecCCcc-------------------hhhhh--hhhcccccccceeeec
Confidence 45888899999888888999999999999998732211 00111 1112599999999998
Q ss_pred CCCC-eEEEEc-CCeEEEEECCCceE---------EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 814 KNDS-YVMSAT-GGKISLFNMMTFKV---------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 814 ~dg~-~la~~~-dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
..+. ++++++ |.++++|++...+. ..+...|...|.+++++| +.+++|+|+.|.+.+||++.......
T Consensus 421 ~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~-ndkLiAT~SqDktaKiW~le~~~l~~ 499 (775)
T KOG0319|consen 421 KLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAP-NDKLIATGSQDKTAKIWDLEQLRLLG 499 (775)
T ss_pred ccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecC-CCceEEecccccceeeecccCceEEE
Confidence 7654 778887 99999999976221 123346899999999999 89999999999999999999999999
Q ss_pred eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEE
Q 001319 883 KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAI 961 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v 961 (1101)
++.||...|.++.|++..+.++|+|.|++|+||.++++++.+ .++||. ..|..+.|-.+|+.|++ +.||-+++
T Consensus 500 vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClk-----T~eGH~-~aVlra~F~~~~~qliS~~adGliKl 573 (775)
T KOG0319|consen 500 VLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLK-----TFEGHT-SAVLRASFIRNGKQLISAGADGLIKL 573 (775)
T ss_pred EeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeee-----eecCcc-ceeEeeeeeeCCcEEEeccCCCcEEE
Confidence 999999999999999999999999999999999999987544 456666 78999999999999998 56999999
Q ss_pred EEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 962 YDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 962 ~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
|++.+++++..+..| ...|++++-++++.+++||+.||.|.+|.=.+.
T Consensus 574 Wnikt~eC~~tlD~H---~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~Te 621 (775)
T KOG0319|consen 574 WNIKTNECEMTLDAH---NDRVWALSVSPLLDMFVTGGGDGRIIFWKDVTE 621 (775)
T ss_pred Eeccchhhhhhhhhc---cceeEEEeecCccceeEecCCCeEEEEeecCcH
Confidence 999999999999876 899999999999999999999999999976553
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-50 Score=411.27 Aligned_cols=567 Identities=14% Similarity=0.220 Sum_probs=443.6
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeE
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i 430 (1101)
.-.|.|..++.+. .+.|.+-+++...... ++.+|...++-..|||.|-|+|+|...|+|
T Consensus 25 g~dpkgd~ilY~n--Gksv~ir~i~~~~~~~-------------------iYtEH~~~vtVAkySPsG~yiASGD~sG~v 83 (603)
T KOG0318|consen 25 GGDPKGDNILYTN--GKSVIIRNIDNPASVD-------------------IYTEHAHQVTVAKYSPSGFYIASGDVSGKV 83 (603)
T ss_pred ccCCCCCeEEEeC--CCEEEEEECCCcccee-------------------eeccccceeEEEEeCCCceEEeecCCcCcE
Confidence 3456677777764 4578888887765432 478899999999999999999999999999
Q ss_pred EEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec--CCc--eEEEEEcCCceeEEeecCCcCeEEEecccCC
Q 001319 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKE 506 (1101)
Q Consensus 431 ~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~--~d~--~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~ 506 (1101)
||||....+.+. ..+++.-.++|.+++|+.|+++ +++.+ .++ .+.+|| +|..+-.+.||...|+++.|-|..
T Consensus 84 RIWdtt~~~hiL-Knef~v~aG~I~Di~Wd~ds~R--I~avGEGrerfg~~F~~D-SG~SvGei~GhSr~ins~~~KpsR 159 (603)
T KOG0318|consen 84 RIWDTTQKEHIL-KNEFQVLAGPIKDISWDFDSKR--IAAVGEGRERFGHVFLWD-SGNSVGEITGHSRRINSVDFKPSR 159 (603)
T ss_pred EEEeccCcceee-eeeeeecccccccceeCCCCcE--EEEEecCccceeEEEEec-CCCccceeeccceeEeeeeccCCC
Confidence 999998744332 2367788899999999999996 44433 333 455566 677788999999999999998865
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec---cc
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA---GF 583 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~---~~ 583 (1101)
. -++++++.|++|.+|+-...+-...+..|...|.++.|+|||.++++.+. |+.+.+||-.+|+.+..+. +|
T Consensus 160 P-fRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gs----Dgki~iyDGktge~vg~l~~~~aH 234 (603)
T KOG0318|consen 160 P-FRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGS----DGKIYIYDGKTGEKVGELEDSDAH 234 (603)
T ss_pred c-eEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecC----CccEEEEcCCCccEEEEecCCCCc
Confidence 3 67999999999999986666666777788889999999999999999986 9999999999999999998 66
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC-CCCCeeEEecCCCEEEEEEcCCcEEEEEccccc
Q 001319 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
.+ .|..++|+||+..+++++.|.+++|||+.+.+++.++...... ..-..+.|- ...|++.+.+|+|.+++.....
T Consensus 235 kG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq--kd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 235 KG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ--KDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred cc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEe--CCeEEEEEcCcEEEEecccCCC
Confidence 66 8999999999999999999999999999999999988765431 111234453 6689999999999999887662
Q ss_pred cccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEE
Q 001319 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVR 742 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 742 (1101)
..+.+ .+|...|++
T Consensus 312 -~~~~i-----------------------------------------------------------------~GHnK~ITa 325 (603)
T KOG0318|consen 312 -VLKVI-----------------------------------------------------------------SGHNKSITA 325 (603)
T ss_pred -hhhee-----------------------------------------------------------------cccccceeE
Confidence 33333 458999999
Q ss_pred EEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE
Q 001319 743 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 822 (1101)
Q Consensus 743 ~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 822 (1101)
+..++++++|++++.||.|.-|+....... .+.+..|...|.+++.+..+.++.++
T Consensus 326 Ltv~~d~~~i~SgsyDG~I~~W~~~~g~~~------------------------~~~g~~h~nqI~~~~~~~~~~~~t~g 381 (603)
T KOG0318|consen 326 LTVSPDGKTIYSGSYDGHINSWDSGSGTSD------------------------RLAGKGHTNQIKGMAASESGELFTIG 381 (603)
T ss_pred EEEcCCCCEEEeeccCceEEEEecCCcccc------------------------ccccccccceEEEEeecCCCcEEEEe
Confidence 999999999999999999999986543211 12222489999999999888888888
Q ss_pred cCCeEEEEECCCceEEEE--eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCC
Q 001319 823 TGGKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 900 (1101)
Q Consensus 823 ~dg~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 900 (1101)
-|+++++.++........ ++. .....+++..+ ++.+++.++.++-+.+=|... +.... -.-...+++++|++
T Consensus 382 ~Dd~l~~~~~~~~~~t~~~~~~l-g~QP~~lav~~-d~~~avv~~~~~iv~l~~~~~---~~~~~-~~y~~s~vAv~~~~ 455 (603)
T KOG0318|consen 382 WDDTLRVISLKDNGYTKSEVVKL-GSQPKGLAVLS-DGGTAVVACISDIVLLQDQTK---VSSIP-IGYESSAVAVSPDG 455 (603)
T ss_pred cCCeEEEEecccCcccccceeec-CCCceeEEEcC-CCCEEEEEecCcEEEEecCCc---ceeec-cccccceEEEcCCC
Confidence 899999998865433222 121 22334888888 776777777655444433332 22221 23457899999999
Q ss_pred CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCC
Q 001319 901 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL 979 (1101)
Q Consensus 901 ~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h 979 (1101)
..++.|+.||.|++|.+..++....... ..+. +.++.+++|||+.+||+++ .+.+.+||..+.+.....- ..|
T Consensus 456 ~~vaVGG~Dgkvhvysl~g~~l~ee~~~---~~h~-a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w--~FH 529 (603)
T KOG0318|consen 456 SEVAVGGQDGKVHVYSLSGDELKEEAKL---LEHR-AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW--AFH 529 (603)
T ss_pred CEEEEecccceEEEEEecCCcccceeee---eccc-CCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee--eee
Confidence 9999999999999999998765332211 1222 7899999999999999987 8999999999887732222 224
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeE
Q 001319 980 SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSV 1059 (1101)
Q Consensus 980 ~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v 1059 (1101)
...|.+++|||+.+++|||+-|..|.||+++.......+. .+|...+..+.|.. +..+++++.|.+|
T Consensus 530 takI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~ik-----------nAH~~gVn~v~wld--e~tvvSsG~Da~i 596 (603)
T KOG0318|consen 530 TAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIK-----------NAHLGGVNSVAWLD--ESTVVSSGQDANI 596 (603)
T ss_pred eeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEec-----------cccccCceeEEEec--CceEEeccCccee
Confidence 8999999999999999999999999999999876654444 24444577899975 7899999999999
Q ss_pred EEEeCC
Q 001319 1060 KVMEPS 1065 (1101)
Q Consensus 1060 ~iWd~~ 1065 (1101)
++|++.
T Consensus 597 K~W~v~ 602 (603)
T KOG0318|consen 597 KVWNVT 602 (603)
T ss_pred EEeccc
Confidence 999874
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=426.32 Aligned_cols=555 Identities=17% Similarity=0.281 Sum_probs=440.3
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+..+.+...|.+++.||+|..| ++-...|...+-++.....++... -...|.|+.|||
T Consensus 48 ~Tl~~e~~~NI~~ialSp~g~ll-lavdE~g~~~lvs~~~r~Vlh~f~--------------------fk~~v~~i~fSP 106 (893)
T KOG0291|consen 48 YTLPLETRYNITRIALSPDGTLL-LAVDERGRALLVSLLSRSVLHRFN--------------------FKRGVGAIKFSP 106 (893)
T ss_pred eeEEeecCCceEEEEeCCCceEE-EEEcCCCcEEEEecccceeeEEEe--------------------ecCccceEEECC
Confidence 44556689999999999999854 555788888888887766654311 245899999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcc-----cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c--CCceeE
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~--~~~~~~ 488 (1101)
||+++|+|..+ .+.||..-.... .....++.+|...|.++.|+.|.+ +|++|+.|.++++|+ . .+-..+
T Consensus 107 ng~~fav~~gn-~lqiw~~P~~~~~~~~pFvl~r~~~g~fddi~si~Ws~DSr--~l~~gsrD~s~rl~~v~~~k~~~~~ 183 (893)
T KOG0291|consen 107 NGKFFAVGCGN-LLQIWHAPGEIKNEFNPFVLHRTYLGHFDDITSIDWSDDSR--LLVTGSRDLSARLFGVDGNKNLFTY 183 (893)
T ss_pred CCcEEEEEecc-eeEEEecCcchhcccCcceEeeeecCCccceeEEEeccCCc--eEEeccccceEEEEEeccccccceE
Confidence 99999998654 699998754322 223335679999999999999999 899999999999999 3 333467
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-----------------------CCe-----------eeec
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----------------------MGS-----------RVDY 534 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-----------------------~~~-----------~~~~ 534 (1101)
.+.+|.+.|.+.-|.. +...+++.+.||.+.+|.... ++. +.-+
T Consensus 184 ~l~gHkd~VvacfF~~--~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~l 261 (893)
T KOG0291|consen 184 ALNGHKDYVVACFFGA--NSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYL 261 (893)
T ss_pred eccCCCcceEEEEecc--CcceEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeee
Confidence 8899999999988865 557899999999999998761 111 0112
Q ss_pred cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEE
Q 001319 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWD 613 (1101)
Q Consensus 535 ~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd 613 (1101)
......+++.+|++..+.|+++-. .|...+|++....+++.+.-... .+..++|+..|.+++.|+ .-|.+.||+
T Consensus 262 n~~~~kvtaa~fH~~t~~lvvgFs----sG~f~LyelP~f~lih~LSis~~-~I~t~~~N~tGDWiA~g~~klgQLlVwe 336 (893)
T KOG0291|consen 262 NQNSSKVTAAAFHKGTNLLVVGFS----SGEFGLYELPDFNLIHSLSISDQ-KILTVSFNSTGDWIAFGCSKLGQLLVWE 336 (893)
T ss_pred cccccceeeeeccCCceEEEEEec----CCeeEEEecCCceEEEEeecccc-eeeEEEecccCCEEEEcCCccceEEEEE
Confidence 223357899999999999999875 78899999999999999887665 789999999999999977 458999999
Q ss_pred CCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccccc
Q 001319 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1101)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 693 (1101)
..+..-+...+ +|...+.+++++|||+++++|+.||.|+|||..++ -++.++
T Consensus 337 WqsEsYVlKQQ--gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg-fC~vTF------------------------- 388 (893)
T KOG0291|consen 337 WQSESYVLKQQ--GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG-FCFVTF------------------------- 388 (893)
T ss_pred eeccceeeecc--ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc-eEEEEe-------------------------
Confidence 98877665555 44668999999999999999999999999998765 111110
Q ss_pred ccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC
Q 001319 694 SSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 773 (1101)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~ 773 (1101)
T Consensus 389 -------------------------------------------------------------------------------- 388 (893)
T KOG0291|consen 389 -------------------------------------------------------------------------------- 388 (893)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCC-CeeEE
Q 001319 774 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-ASTFL 851 (1101)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l 851 (1101)
. .|...|+.+.|+.+|+.+++++ ||+|+.||+...+..+++..+.. ...|+
T Consensus 389 -------------------------t--eHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~Qfscv 441 (893)
T KOG0291|consen 389 -------------------------T--EHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCV 441 (893)
T ss_pred -------------------------c--cCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEE
Confidence 0 2888899999999999999998 99999999999999999987443 46788
Q ss_pred EEecCCCCEEEEEeCCC-cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc-cceEEe
Q 001319 852 AFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR-KSVTIH 929 (1101)
Q Consensus 852 ~~s~~~~~~la~g~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~-~~~~~~ 929 (1101)
+..| .|.++.+|+.|. .|++|++++|+++..+.||.++|.+++|+|++..|+|++.|.+|++||+-..... ....+.
T Consensus 442 avD~-sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTVRiW~if~s~~~vEtl~i~ 520 (893)
T KOG0291|consen 442 AVDP-SGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTVRIWDIFSSSGTVETLEIR 520 (893)
T ss_pred EEcC-CCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceEEEEEeeccCceeeeEeec
Confidence 8888 899999999886 7999999999999999999999999999999999999999999999999764321 122222
Q ss_pred ecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCC-----------------CCCCCEEEEEEccC
Q 001319 930 IPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQD-----------------ALSAPISCAVYSCN 991 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~-----------------~h~~~v~~v~~s~d 991 (1101)
..+..++|+|||+.|+++. ||.|.+||+..+.....+.+.. ......+.+++|+|
T Consensus 521 -------sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaD 593 (893)
T KOG0291|consen 521 -------SDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSAD 593 (893)
T ss_pred -------cceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCC
Confidence 6789999999999999965 9999999998877664443321 12578999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCceeEeeCCCCc-------------------------------------CCCcc------
Q 001319 992 SQLVFATFCDGNIGVFDADTLRLRCYIAPSTY-------------------------------------LSPSV------ 1028 (1101)
Q Consensus 992 g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~-------------------------------------~~~~~------ 1028 (1101)
|..|++|+....|++|++.++-++.+++-..- ..+.+
T Consensus 594 G~~IlAgG~sn~iCiY~v~~~vllkkfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdls 673 (893)
T KOG0291|consen 594 GKCILAGGESNSICIYDVPEGVLLKKFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLS 673 (893)
T ss_pred CCEEEecCCcccEEEEECchhheeeeEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCcc
Confidence 99999999999999999999877666551110 00000
Q ss_pred -cCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 1029 -LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1029 -~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
....-.+.+.++.|+|+ ++-++.++..| |.||.+.+.
T Consensus 674 sRr~rpeIrv~sv~fsPt-graFAaatTEG-l~IYsld~~ 711 (893)
T KOG0291|consen 674 SRRFRPEIRVTSVQFSPT-GRAFAAATTEG-LLIYSLDTT 711 (893)
T ss_pred ccccCceEEEEEEEECCC-cCeeeeecccc-eEEEecCCc
Confidence 00112467889999995 77788887776 567777553
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=406.74 Aligned_cols=536 Identities=17% Similarity=0.272 Sum_probs=426.8
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
-.+|...++-..|||.|- ++|+|...|.|||||....+.+...+ ++.-.++|..++|++|++
T Consensus 55 YtEH~~~vtVAkySPsG~-yiASGD~sG~vRIWdtt~~~hiLKne-----------------f~v~aG~I~Di~Wd~ds~ 116 (603)
T KOG0318|consen 55 YTEHAHQVTVAKYSPSGF-YIASGDVSGKVRIWDTTQKEHILKNE-----------------FQVLAGPIKDISWDFDSK 116 (603)
T ss_pred eccccceeEEEEeCCCce-EEeecCCcCcEEEEeccCcceeeeee-----------------eeecccccccceeCCCCc
Confidence 346899999999999997 56999999999999987755444322 334567999999999999
Q ss_pred EEEEEEC--CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcC
Q 001319 420 YVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 420 ~las~~~--d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~ 496 (1101)
.|++.+. ++..+++-.++|..+. ++.||...|++++|-|.-.. .++||++|++|.+|+ ..-+--.++..|..-
T Consensus 117 RI~avGEGrerfg~~F~~DSG~SvG---ei~GhSr~ins~~~KpsRPf-Ri~T~sdDn~v~ffeGPPFKFk~s~r~HskF 192 (603)
T KOG0318|consen 117 RIAAVGEGRERFGHVFLWDSGNSVG---EITGHSRRINSVDFKPSRPF-RIATGSDDNTVAFFEGPPFKFKSSFREHSKF 192 (603)
T ss_pred EEEEEecCccceeEEEEecCCCccc---eeeccceeEeeeeccCCCce-EEEeccCCCeEEEeeCCCeeeeecccccccc
Confidence 9988764 3334455455565555 78899999999999998776 899999999999999 766777888899999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc---CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
|+++.|+| ||.++++++.||+|.+||-.+++....+. .|.+.|.+++|+||+..+++++. |.+++|||+.+
T Consensus 193 V~~VRysP--DG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~Sa----Dkt~KIWdVs~ 266 (603)
T KOG0318|consen 193 VNCVRYSP--DGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSA----DKTIKIWDVST 266 (603)
T ss_pred eeeEEECC--CCCeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecC----CceEEEEEeec
Confidence 99999988 67999999999999999999999988887 78889999999999999999986 89999999999
Q ss_pred CeeEEEecccCC---cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 574 GTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 574 ~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.++++++..... ..+.++ |. +..|++.+.+|.|.+++......+..+.+|.. .|+++..+|++.+|++|+.|
T Consensus 267 ~slv~t~~~~~~v~dqqvG~l-Wq--kd~lItVSl~G~in~ln~~d~~~~~~i~GHnK--~ITaLtv~~d~~~i~SgsyD 341 (603)
T KOG0318|consen 267 NSLVSTWPMGSTVEDQQVGCL-WQ--KDHLITVSLSGTINYLNPSDPSVLKVISGHNK--SITALTVSPDGKTIYSGSYD 341 (603)
T ss_pred cceEEEeecCCchhceEEEEE-Ee--CCeEEEEEcCcEEEEecccCCChhheeccccc--ceeEEEEcCCCCEEEeeccC
Confidence 999999875443 123333 33 67999999999999999999998888877644 89999999999999999999
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
|.|.-|+..++.... +.
T Consensus 342 G~I~~W~~~~g~~~~--~~------------------------------------------------------------- 358 (603)
T KOG0318|consen 342 GHINSWDSGSGTSDR--LA------------------------------------------------------------- 358 (603)
T ss_pred ceEEEEecCCccccc--cc-------------------------------------------------------------
Confidence 999999998772110 00
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
+..|...|.+++.+..+. +++++-|.++++.++......... .. .......++
T Consensus 359 --g~~h~nqI~~~~~~~~~~-~~t~g~Dd~l~~~~~~~~~~t~~~-----------------~~-------~lg~QP~~l 411 (603)
T KOG0318|consen 359 --GKGHTNQIKGMAASESGE-LFTIGWDDTLRVISLKDNGYTKSE-----------------VV-------KLGSQPKGL 411 (603)
T ss_pred --cccccceEEEEeecCCCc-EEEEecCCeEEEEecccCcccccc-----------------ee-------ecCCCceeE
Confidence 034888888888887665 888888889988876432211110 00 022334488
Q ss_pred EecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE--EeeccCC
Q 001319 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQ 888 (1101)
Q Consensus 811 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~--~~~~~h~ 888 (1101)
+..+|+.+++.+.++.|.+..-.++ ..++. ..-...+++++| ++..+|+|+.||.|+||.+..+.+. ..+..|.
T Consensus 412 av~~d~~~avv~~~~~iv~l~~~~~--~~~~~-~~y~~s~vAv~~-~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~~h~ 487 (603)
T KOG0318|consen 412 AVLSDGGTAVVACISDIVLLQDQTK--VSSIP-IGYESSAVAVSP-DGSEVAVGGQDGKVHVYSLSGDELKEEAKLLEHR 487 (603)
T ss_pred EEcCCCCEEEEEecCcEEEEecCCc--ceeec-cccccceEEEcC-CCCEEEEecccceEEEEEecCCcccceeeeeccc
Confidence 9999988877777666666542222 12222 244678999999 9999999999999999999876543 3566899
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCc
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKM 967 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~ 967 (1101)
++|++++||||+.+||++...+.|.+||+.+++.....- .-|. ..|.+++|+|+..++|+|+ |..|.||+++..
T Consensus 488 a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w----~FHt-akI~~~aWsP~n~~vATGSlDt~Viiysv~kP 562 (603)
T KOG0318|consen 488 AAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRW----AFHT-AKINCVAWSPNNKLVATGSLDTNVIIYSVKKP 562 (603)
T ss_pred CCceEEEECCCCcEEEEeccCCcEEEEEcccCceeccee----eeee-eeEEEEEeCCCceEEEeccccceEEEEEccCh
Confidence 999999999999999999999999999999987632211 1122 7899999999999999987 999999999876
Q ss_pred eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 968 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 968 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
....... ..|...|+.+.|- |...|++.+.|..|++|++.
T Consensus 563 ~~~i~ik--nAH~~gVn~v~wl-de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 563 AKHIIIK--NAHLGGVNSVAWL-DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred hhheEec--cccccCceeEEEe-cCceEEeccCcceeEEeccc
Confidence 5553333 3457779999997 55679999999999999874
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-54 Score=421.57 Aligned_cols=377 Identities=21% Similarity=0.370 Sum_probs=313.1
Q ss_pred ccccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+.++++....++....-||.+.|.|++|||+|++ ||+|+.|.++|+||+.+..... +.++
T Consensus 96 qavfrvrpvtrCssS~~GH~e~Vl~~~fsp~g~~-l~tGsGD~TvR~WD~~TeTp~~-------------------t~Kg 155 (480)
T KOG0271|consen 96 QAVFRVRPVTRCSSSIAGHGEAVLSVQFSPTGSR-LVTGSGDTTVRLWDLDTETPLF-------------------TCKG 155 (480)
T ss_pred chhhcccccceeccccCCCCCcEEEEEecCCCce-EEecCCCceEEeeccCCCCcce-------------------eecC
Confidence 3367777777777777889999999999999996 5999999999999999877654 5899
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec-----CCCceEEEEecCCceEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-----PNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-----d~~~~~l~s~~~d~~v~i 479 (1101)
|..+|.|++|||||+.||+|+.||+|++||.++|+++.. .|.+|...|++++|-| ..+ +|++++.||+|+|
T Consensus 156 H~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~--~l~gH~K~It~Lawep~hl~p~~r--~las~skDg~vrI 231 (480)
T KOG0271|consen 156 HKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGR--ALRGHKKWITALAWEPLHLVPPCR--RLASSSKDGSVRI 231 (480)
T ss_pred CccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccc--cccCcccceeEEeecccccCCCcc--ceecccCCCCEEE
Confidence 999999999999999999999999999999999988765 6889999999999976 455 7999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| ..+.++..+.||+.+|+|++|-. + .+|++++.|++|++|+...+.....+.+|.++|+.++.+.|- ++-
T Consensus 232 Wd~~~~~~~~~lsgHT~~VTCvrwGG--~-gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy--~LR--- 303 (480)
T KOG0271|consen 232 WDTKLGTCVRTLSGHTASVTCVRWGG--E-GLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDY--VLR--- 303 (480)
T ss_pred EEccCceEEEEeccCccceEEEEEcC--C-ceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchh--hhh---
Confidence 99 88899999999999999999953 3 499999999999999999988999999999999999887552 111
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
+ -+|.|.++..-..++ . ..+.+..++ ...-
T Consensus 304 --------------t-----------------gaf~~t~~~~~~~se--------~-~~~Al~rY~----------~~~~ 333 (480)
T KOG0271|consen 304 --------------T-----------------GAFDHTGRKPKSFSE--------E-QKKALERYE----------AVLK 333 (480)
T ss_pred --------------c-----------------cccccccccCCChHH--------H-HHHHHHHHH----------Hhhc
Confidence 1 123333322111000 0 000011111 1111
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
..+..|++|++|.++.+|+.....+++..+
T Consensus 334 ~~~erlVSgsDd~tlflW~p~~~kkpi~rm-------------------------------------------------- 363 (480)
T KOG0271|consen 334 DSGERLVSGSDDFTLFLWNPFKSKKPITRM-------------------------------------------------- 363 (480)
T ss_pred cCcceeEEecCCceEEEecccccccchhhh--------------------------------------------------
Confidence 245789999999999999754331111111
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
T Consensus 364 -------------------------------------------------------------------------------- 363 (480)
T KOG0271|consen 364 -------------------------------------------------------------------------------- 363 (480)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
. +|..-|..+.||||++++|+++ |..|++||..+|+.+.+|++|-..|..++|+. |.++|++|+.|.++++|++.+
T Consensus 364 t--gHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsa-DsRLlVS~SkDsTLKvw~V~t 440 (480)
T KOG0271|consen 364 T--GHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSA-DSRLLVSGSKDSTLKVWDVRT 440 (480)
T ss_pred h--chhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEecc-CccEEEEcCCCceEEEEEeee
Confidence 0 3778899999999999999999 99999999999999999999999999999999 999999999999999999999
Q ss_pred ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001319 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 878 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
.++...+.||.+.|.++.|+|||..+++|+.|+.+++|.
T Consensus 441 kKl~~DLpGh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 441 KKLKQDLPGHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred eeecccCCCCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 999999999999999999999999999999999999995
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-48 Score=415.95 Aligned_cols=543 Identities=15% Similarity=0.244 Sum_probs=433.6
Q ss_pred CCcceeecCCCccccccCC---------CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceecccc
Q 001319 314 SAEEVTYSSSRHQTWSLDD---------LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKP 384 (1101)
Q Consensus 314 ~~~~v~~~~~~~~~~~~~~---------~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~ 384 (1101)
++..+.+++.+..+-.++. ..+.+.+.+..+.+|.|++|||||+ ++|+| ..+.+.||.......-.-.+
T Consensus 57 NI~~ialSp~g~lllavdE~g~~~lvs~~~r~Vlh~f~fk~~v~~i~fSPng~-~fav~-~gn~lqiw~~P~~~~~~~~p 134 (893)
T KOG0291|consen 57 NITRIALSPDGTLLLAVDERGRALLVSLLSRSVLHRFNFKRGVGAIKFSPNGK-FFAVG-CGNLLQIWHAPGEIKNEFNP 134 (893)
T ss_pred ceEEEEeCCCceEEEEEcCCCcEEEEecccceeeEEEeecCccceEEECCCCc-EEEEE-ecceeEEEecCcchhcccCc
Confidence 3445555555554333332 3445556667789999999999998 55665 56789999976433211111
Q ss_pred ceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCC
Q 001319 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK 464 (1101)
Q Consensus 385 ~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~ 464 (1101)
| ...+++.||-..|.++.||.|.++|++|+.|.++++|+++..+.+.. ..+.+|.+.|-++-|..+..
T Consensus 135 F-----------vl~r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~~~~-~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 135 F-----------VLHRTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKNLFT-YALNGHKDYVVACFFGANSL 202 (893)
T ss_pred c-----------eEeeeecCCccceeEEEeccCCceEEeccccceEEEEEeccccccce-EeccCCCcceEEEEeccCcc
Confidence 2 23457899999999999999999999999999999999998776443 36889999999999999988
Q ss_pred ceEEEEecCCceEEEEEcC------------------------Cce-----e------EEeecCCcCeEEEecccCCCcc
Q 001319 465 LLCVVTCGDDKLIKVWELS------------------------GRK-----L------FNFEGHEAPVYSICPHHKENIQ 509 (1101)
Q Consensus 465 ~~~l~s~~~d~~v~iwd~~------------------------~~~-----~------~~~~~h~~~v~~v~~~~~~~~~ 509 (1101)
-+++.+.||.+.+|..+ ++. . .-+......|++.+|++.. .
T Consensus 203 --~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t--~ 278 (893)
T KOG0291|consen 203 --DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT--N 278 (893)
T ss_pred --eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc--e
Confidence 69999999999999833 111 0 1112223678999998844 7
Q ss_pred EEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceE
Q 001319 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (1101)
Q Consensus 510 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 589 (1101)
.|+++-..|...+|++.....+..+.....+|..++|+..|.+++.++. +-|++.+|+..+...+.+.++|.. .+.
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~---klgQLlVweWqsEsYVlKQQgH~~-~i~ 354 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCS---KLGQLLVWEWQSESYVLKQQGHSD-RIT 354 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCC---ccceEEEEEeeccceeeecccccc-cee
Confidence 8999999999999999999999998888899999999999999999986 478999999999999999999987 899
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccccccc
Q 001319 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVE 669 (1101)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~ 669 (1101)
+++++|||.++++|++||+|+|||..++-++.++..| ...|+.+.|+..|+.+++.+-||+|+.||+... ...+++.
T Consensus 355 ~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteH--ts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY-rNfRTft 431 (893)
T KOG0291|consen 355 SLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEH--TSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY-RNFRTFT 431 (893)
T ss_pred eEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccC--CCceEEEEEEecCCEEEEeecCCeEEeeeeccc-ceeeeec
Confidence 9999999999999999999999999999999999866 448999999999999999999999999998654 2222221
Q ss_pred CCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCc
Q 001319 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 749 (1101)
Q Consensus 670 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 749 (1101)
.
T Consensus 432 ~------------------------------------------------------------------------------- 432 (893)
T KOG0291|consen 432 S------------------------------------------------------------------------------- 432 (893)
T ss_pred C-------------------------------------------------------------------------------
Confidence 1
Q ss_pred ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC-eE
Q 001319 750 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG-KI 827 (1101)
Q Consensus 750 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg-~i 827 (1101)
.......|++..|.|.++.+|+ |. .|
T Consensus 433 ----------------------------------------------------P~p~QfscvavD~sGelV~AG~~d~F~I 460 (893)
T KOG0291|consen 433 ----------------------------------------------------PEPIQFSCVAVDPSGELVCAGAQDSFEI 460 (893)
T ss_pred ----------------------------------------------------CCceeeeEEEEcCCCCEEEeeccceEEE
Confidence 0223356888889999998888 53 59
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce-EEEeeccCCCCeeEEEEcCCCCEEEEE
Q 001319 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFSTSLNILVSS 906 (1101)
Q Consensus 828 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s~d~~~l~s~ 906 (1101)
.||++++|+.+..+.+|.++|.+++|+| .+..||+|+.|.+|++||+-... .+.++ .+...+.+++|+|||+.|+++
T Consensus 461 fvWS~qTGqllDiLsGHEgPVs~l~f~~-~~~~LaS~SWDkTVRiW~if~s~~~vEtl-~i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 461 FVWSVQTGQLLDILSGHEGPVSGLSFSP-DGSLLASGSWDKTVRIWDIFSSSGTVETL-EIRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred EEEEeecCeeeehhcCCCCcceeeEEcc-ccCeEEeccccceEEEEEeeccCceeeeE-eeccceeEEEEcCCCCeEEEE
Confidence 9999999999999999999999999999 89999999999999999998653 33444 477889999999999999999
Q ss_pred eCCCcEEEEECCCCccccceE--------------EeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeee
Q 001319 907 GADAQLCVWSIDTWEKRKSVT--------------IHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIR 971 (1101)
Q Consensus 907 s~Dg~v~lwd~~~~~~~~~~~--------------~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~ 971 (1101)
.-||.|.+||+..+.+..... +...........+.+++|+||.+++++ ..+.|++|++.++-.++
T Consensus 539 TldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~iCiY~v~~~vllk 618 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNSICIYDVPEGVLLK 618 (893)
T ss_pred EecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCcccEEEEECchhheee
Confidence 999999999998765442221 111111122678899999999999995 58899999999887666
Q ss_pred EeccCCCC-----------------------------------------------------CCCEEEEEEccCCCEEEEE
Q 001319 972 QWTPQDAL-----------------------------------------------------SAPISCAVYSCNSQLVFAT 998 (1101)
Q Consensus 972 ~~~~~~~h-----------------------------------------------------~~~v~~v~~s~dg~~l~s~ 998 (1101)
.+...+.+ .-.|+++.|||.|+-.|++
T Consensus 619 kfqiS~N~sLdg~~efln~rkmtEfG~~~LiD~e~~~~e~~i~~~lpG~~~gdlssRr~rpeIrv~sv~fsPtgraFAaa 698 (893)
T KOG0291|consen 619 KFQISDNRSLDGVLEFLNRRKMTEFGNMDLIDTEESDLEGRIDIALPGVQRGDLSSRRFRPEIRVTSVQFSPTGRAFAAA 698 (893)
T ss_pred eEEeccccchhHHHHHhccccccccCCccccccccccccccccccCCccccCCccccccCceEEEEEEEECCCcCeeeee
Confidence 54332110 2247899999999999999
Q ss_pred eCCCcEEEEeCCCCcee
Q 001319 999 FCDGNIGVFDADTLRLR 1015 (1101)
Q Consensus 999 ~~dg~i~vwd~~~~~~~ 1015 (1101)
+..| +.||.+.+.-+.
T Consensus 699 tTEG-l~IYsld~~~~F 714 (893)
T KOG0291|consen 699 TTEG-LLIYSLDTTILF 714 (893)
T ss_pred cccc-eEEEecCCceEE
Confidence 9888 778988775443
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-48 Score=409.86 Aligned_cols=570 Identities=16% Similarity=0.228 Sum_probs=445.4
Q ss_pred cCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEE
Q 001319 354 PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLY 433 (1101)
Q Consensus 354 pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vw 433 (1101)
-.|+++.+ +.--.|.+||+.+|+.... .+.......|+|++-+||.-.||+|..||.|+||
T Consensus 32 ~~Gr~va~--~a~E~vn~WdlRtge~~~~-----------------l~~~~~k~evt~l~~~~d~l~lAVGYaDGsVqif 92 (888)
T KOG0306|consen 32 GKGRAVAV--SALEQVNIWDLRTGEIEKK-----------------LILLKKKAEVTCLRSSDDILLLAVGYADGSVQIF 92 (888)
T ss_pred CCCcEEEE--eccccEeEEeeecchhhhh-----------------hhhhcccceEEEeeccCCcceEEEEecCceEEee
Confidence 45885433 3445899999999965431 0122344689999999999999999999999999
Q ss_pred eecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEE
Q 001319 434 SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512 (1101)
Q Consensus 434 d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~ 512 (1101)
+..++.... ++.||...|+++.|...|. .|+|||.|+.|.+|| ....-+..+.||...|+..-|.. +..+++
T Consensus 93 ~~~s~~~~~---tfngHK~AVt~l~fd~~G~--rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~--~~~~lv 165 (888)
T KOG0306|consen 93 SLESEEILI---TFNGHKAAVTTLKFDKIGT--RLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLN--GDSFLV 165 (888)
T ss_pred ccCCCceee---eecccccceEEEEEcccCc--eEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccC--CCeEEE
Confidence 999876554 7889999999999999999 799999999999999 77777899999999999988865 347999
Q ss_pred EeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC------------eeEEEe
Q 001319 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------------TIKRTY 580 (1101)
Q Consensus 513 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~------------~~~~~~ 580 (1101)
+.+.|+.|++||+++..+..+...|...+.++++.+ +.+++++. ++.+.+|++... +...++
T Consensus 166 S~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~--~~lvt~~~----dse~~v~~L~~~~D~~~~~~~~s~~~~G~~ 239 (888)
T KOG0306|consen 166 SVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE--KLLVTAGT----DSELKVWELAFEDDEKETNRYISTKLRGTF 239 (888)
T ss_pred EeccCceEEEEecccceeeeEEecccceEEEEEEec--ceEEEEec----CCceEEEEeecccccccccccceeecccee
Confidence 999999999999999999999999999999999988 67777765 888999998211 011111
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEe-------------e-------------------ccCCC
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS-------------T-------------------DAEGG 628 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------------~-------------------~~~~~ 628 (1101)
........-.++..++++++++-+.|..+.++.+.+.+.+.. . ..-..
T Consensus 240 ~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 240 IRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred eeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 111111233366777888899999999999998865321100 0 00001
Q ss_pred CCCCCeeEEecCCC---EEEEEEcCCcEEEEEccccccc---cccccCCCcccccCcceeeeeeeccccccccCCCCCcc
Q 001319 629 LPNLPRLRFSKEGN---LLAVTTADNGFKILANAIGLRS---LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1101)
Q Consensus 629 ~~~v~~v~~s~~g~---~l~~~~~d~~i~iwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 702 (1101)
...+.++.|-|.+. .|+. -.++++..|.++..... ......-....++..|.++.++.+...++.++...
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~S--- 395 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGES--- 395 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeeecCCCc---
Confidence 12456777777543 3333 56788888887652111 11122233445677899999999988886655544
Q ss_pred eeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecc
Q 001319 703 VERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 782 (1101)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~ 782 (1101)
..+|........+.+ ..+.+.+..|.|.+++++.|..+|.+.++|+...
T Consensus 396 -----------ikiWn~~t~kciRTi-------~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~------------- 444 (888)
T KOG0306|consen 396 -----------IKIWNRDTLKCIRTI-------TCGYILASKFVPGDRYIVLGTKNGELQVFDLASA------------- 444 (888)
T ss_pred -----------EEEEEccCcceeEEe-------ccccEEEEEecCCCceEEEeccCCceEEEEeehh-------------
Confidence 337777766666666 3457889999999999999999999999986532
Q ss_pred ccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCC-----ceEEEEee-------CCCCCee
Q 001319 783 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT-----FKVMTTFM-------SPPPAST 849 (1101)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~-----~~~~~~~~-------~~~~~i~ 849 (1101)
.+.... . +|.+.|++++.+||++.+++|+ |.+|++||..- |.....+. .-...|.
T Consensus 445 ---------~l~Eti-~--AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL 512 (888)
T KOG0306|consen 445 ---------SLVETI-R--AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVL 512 (888)
T ss_pred ---------hhhhhh-h--ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEE
Confidence 111111 1 3999999999999999999999 89999998741 22211111 1246799
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe
Q 001319 850 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 850 ~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 929 (1101)
|+.+|| |+++||++--|.+|+||-+++-+....+.||.-||.||..|||++.++|||.|++|++|-++-|.+.+.+..+
T Consensus 513 ~v~~Sp-dgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAH 591 (888)
T KOG0306|consen 513 CVSVSP-DGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAH 591 (888)
T ss_pred EEEEcC-CCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcc
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999987766443
Q ss_pred ecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 930 IPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
. ..|.++.|-|+...+.+ |.|+.|+-||.++.+.+..+..| ...|+|++.+|+|.++++++.|.+|++|.
T Consensus 592 d------DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H---~~ev~cLav~~~G~~vvs~shD~sIRlwE 662 (888)
T KOG0306|consen 592 D------DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH---HSEVWCLAVSPNGSFVVSSSHDKSIRLWE 662 (888)
T ss_pred c------CceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccc---hheeeeeEEcCCCCeEEeccCCceeEeee
Confidence 2 78999999998888777 56999999999999999999877 78999999999999999999999999999
Q ss_pred CCCC
Q 001319 1009 ADTL 1012 (1101)
Q Consensus 1009 ~~~~ 1012 (1101)
...-
T Consensus 663 ~tde 666 (888)
T KOG0306|consen 663 RTDE 666 (888)
T ss_pred ccCc
Confidence 7763
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-47 Score=402.94 Aligned_cols=568 Identities=16% Similarity=0.171 Sum_probs=433.6
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
.|+++|+... -.|.+||+.+|+..+.+.. ..-...|+|+.-++|.- +||.|..||.|+||+ .++....++.||..
T Consensus 33 ~Gr~va~~a~-E~vn~WdlRtge~~~~l~~-~~~k~evt~l~~~~d~l--~lAVGYaDGsVqif~~~s~~~~~tfngHK~ 108 (888)
T KOG0306|consen 33 KGRAVAVSAL-EQVNIWDLRTGEIEKKLIL-LKKKAEVTCLRSSDDIL--LLAVGYADGSVQIFSLESEEILITFNGHKA 108 (888)
T ss_pred CCcEEEEecc-ccEeEEeeecchhhhhhhh-hcccceEEEeeccCCcc--eEEEEecCceEEeeccCCCceeeeeccccc
Confidence 5888877332 3599999999965554322 23345799999888887 799999999999999 88888899999999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|+.+.|.. .|..|++||.|+.|.+||+-.......+.+|...|+.+-|..+.+++++++. |+.|++||+++..
T Consensus 109 AVt~l~fd~--~G~rlaSGskDt~IIvwDlV~E~Gl~rL~GHkd~iT~~~F~~~~~~lvS~sK----Ds~iK~WdL~tqh 182 (888)
T KOG0306|consen 109 AVTTLKFDK--IGTRLASGSKDTDIIVWDLVGEEGLFRLRGHKDSITQALFLNGDSFLVSVSK----DSMIKFWDLETQH 182 (888)
T ss_pred ceEEEEEcc--cCceEeecCCCccEEEEEeccceeeEEeecchHHHhHHhccCCCeEEEEecc----CceEEEEecccce
Confidence 999999955 7789999999999999999999999999999999999999998899999885 9999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC------------eeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV------------NILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~------------~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
+..+.-.|.+ .+..+++.+ +.+++++.|+.+.+|++... +...++...+. .....++..+++++
T Consensus 183 Cf~Thvd~r~-Eiw~l~~~~--~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk-~R~i~l~~d~s~r~ 258 (888)
T KOG0306|consen 183 CFETHVDHRG-EIWALVLDE--KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIRQSK-GREINLVTDFSDRF 258 (888)
T ss_pred eeeEEecccc-eEEEEEEec--ceEEEEecCCceEEEEeecccccccccccceeeccceeeeccC-CceeEEeecCcccE
Confidence 9999999887 899999987 78999999999999998211 01112222221 23445666778889
Q ss_pred EEEEEcCCcEEEEEccccccccccccCCCcccccCcc---eeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEE
Q 001319 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI---ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIV 720 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v---~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (1101)
+++-+.|..+.++.+.+..+..+.+...........- ....+...-+.. +
T Consensus 259 ~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~-----------------------i---- 311 (888)
T KOG0306|consen 259 LVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDE-----------------------I---- 311 (888)
T ss_pred EEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHH-----------------------H----
Confidence 9999999999999988764443333221000000000 000000000000 0
Q ss_pred eCCCeEEEEcCCCCCCcccEEEEEeecCccc--EEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 721 DSGQCRLVTMPESTDTSSKVVRLLYTNSAVG--LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~--l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
..... .....+|.++.+.|.+.. .+..-.++.+..|.++.... .. +....... +
T Consensus 312 --~r~~~------ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~-~~-------------p~~~~~~~--i 367 (888)
T KOG0306|consen 312 --KRLET------IRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGK-TS-------------PEADRTSN--I 367 (888)
T ss_pred --HHHHh------eechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCC-CC-------------ccccccce--e
Confidence 00000 113445666666665432 23335667888887764111 00 00011111 1
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
...+|...|+++++|.|...+++|.++.+++|+..+.++++++.. +-+.+..|.| +++++++|...|.+.+||+.+.
T Consensus 368 ~~~GHR~dVRsl~vS~d~~~~~Sga~~SikiWn~~t~kciRTi~~--~y~l~~~Fvp-gd~~Iv~G~k~Gel~vfdlaS~ 444 (888)
T KOG0306|consen 368 EIGGHRSDVRSLCVSSDSILLASGAGESIKIWNRDTLKCIRTITC--GYILASKFVP-GDRYIVLGTKNGELQVFDLASA 444 (888)
T ss_pred eeccchhheeEEEeecCceeeeecCCCcEEEEEccCcceeEEecc--ccEEEEEecC-CCceEEEeccCCceEEEEeehh
Confidence 223599999999999999999999999999999999999999974 4789999999 8999999999999999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-----CccccceEEe-ecCCCCCCCcceEEEcCCCCEEE
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-----WEKRKSVTIH-IPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~-----~~~~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
..+.+.++|.+.|..++.+||++.+++||.|.+|++||..- |...+...+. ...-.-...+.++.+||||++|+
T Consensus 445 ~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~La 524 (888)
T KOG0306|consen 445 SLVETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLA 524 (888)
T ss_pred hhhhhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEE
Confidence 99999999999999999999999999999999999999742 2211111100 00001126799999999999999
Q ss_pred EEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCC
Q 001319 953 VVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1031 (1101)
Q Consensus 953 ~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h 1031 (1101)
++- |.+++||-+++.+....+.+| .-||.|+.+|||+++++||+.|..|+||-++-|.+...+.. |
T Consensus 525 VsLLdnTVkVyflDtlKFflsLYGH---kLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fA----------H 591 (888)
T KOG0306|consen 525 VSLLDNTVKVYFLDTLKFFLSLYGH---KLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFA----------H 591 (888)
T ss_pred EEeccCeEEEEEecceeeeeeeccc---ccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhc----------c
Confidence 975 999999999999999998876 99999999999999999999999999999999998766542 5
Q ss_pred CCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1032 SQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1032 ~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.+ .++++.|.| +..+++|+|.||.|+-||-..-+
T Consensus 592 dD--Svm~V~F~P-~~~~FFt~gKD~kvKqWDg~kFe 625 (888)
T KOG0306|consen 592 DD--SVMSVQFLP-KTHLFFTCGKDGKVKQWDGEKFE 625 (888)
T ss_pred cC--ceeEEEEcc-cceeEEEecCcceEEeechhhhh
Confidence 55 557999999 79999999999999999987766
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=383.42 Aligned_cols=366 Identities=18% Similarity=0.268 Sum_probs=293.9
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.||.++|.|++|+|+|++||+|+.|.++++||+.+..... +.++|...|.|++|+|||+ .|+||+.||+|++|
T Consensus 110 S~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~---t~KgH~~WVlcvawsPDgk--~iASG~~dg~I~lw 184 (480)
T KOG0271|consen 110 SIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLF---TCKGHKNWVLCVAWSPDGK--KIASGSKDGSIRLW 184 (480)
T ss_pred ccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcce---eecCCccEEEEEEECCCcc--hhhccccCCeEEEe
Confidence 488999999999999999999999999999999999977665 7899999999999999999 89999999999999
Q ss_pred E-cCCcee-EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 481 E-LSGRKL-FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 481 d-~~~~~~-~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
| .+|+++ ..+.+|...|++++|.|-. ..|..+++++++.
T Consensus 185 dpktg~~~g~~l~gH~K~It~Lawep~h---------------------------------------l~p~~r~las~sk 225 (480)
T KOG0271|consen 185 DPKTGQQIGRALRGHKKWITALAWEPLH---------------------------------------LVPPCRRLASSSK 225 (480)
T ss_pred cCCCCCcccccccCcccceeEEeecccc---------------------------------------cCCCccceecccC
Confidence 9 777665 7899999999999997631 1255567777663
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
||.++|||+..+.++..+.+|.. .|+|+.|..+| ++++|+.|++|++|+...|.+...+.+|.+ .|+.++.+
T Consensus 226 ----Dg~vrIWd~~~~~~~~~lsgHT~-~VTCvrwGG~g-liySgS~DrtIkvw~a~dG~~~r~lkGHah--wvN~lals 297 (480)
T KOG0271|consen 226 ----DGSVRIWDTKLGTCVRTLSGHTA-SVTCVRWGGEG-LIYSGSQDRTIKVWRALDGKLCRELKGHAH--WVNHLALS 297 (480)
T ss_pred ----CCCEEEEEccCceEEEEeccCcc-ceEEEEEcCCc-eEEecCCCceEEEEEccchhHHHhhcccch--heeeeecc
Confidence 77788888888888889999988 89999998764 999999999999999999999999998877 78888887
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
.+- .|-+|..| +.++..
T Consensus 298 Tdy-~LRtgaf~------------------------------------~t~~~~-------------------------- 314 (480)
T KOG0271|consen 298 TDY-VLRTGAFD------------------------------------HTGRKP-------------------------- 314 (480)
T ss_pred chh-hhhccccc------------------------------------cccccC--------------------------
Confidence 542 11111111 111110
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
-..++. .......|+
T Consensus 315 ----------------------------------~~~se~--------------------~~~Al~rY~----------- 329 (480)
T KOG0271|consen 315 ----------------------------------KSFSEE--------------------QKKALERYE----------- 329 (480)
T ss_pred ----------------------------------CChHHH--------------------HHHHHHHHH-----------
Confidence 000000 000000000
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECC-CceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 876 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~ 876 (1101)
.+.-..+..+++|+ |.++.+|+.. +.+++..+.+|...|..+.||| |++++|+++-|.+|++|+..
T Consensus 330 -----------~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSP-d~r~IASaSFDkSVkLW~g~ 397 (480)
T KOG0271|consen 330 -----------AVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSP-DGRYIASASFDKSVKLWDGR 397 (480)
T ss_pred -----------HhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECC-CccEEEEeecccceeeeeCC
Confidence 01112357888888 6889999975 4558889999999999999999 99999999999999999999
Q ss_pred cceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeC
Q 001319 877 VDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE 956 (1101)
Q Consensus 877 ~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d 956 (1101)
+|+.+..|+||-++|+.++|+.|.++|++|+.|.++++|++.+.+..
T Consensus 398 tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~--------------------------------- 444 (480)
T KOG0271|consen 398 TGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLK--------------------------------- 444 (480)
T ss_pred CcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeec---------------------------------
Confidence 99999999999999999999999999999999999999999884321
Q ss_pred CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 957 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 957 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
..+. +|..+|.++.|+|||+.+++|+.|..+++|.
T Consensus 445 --------------~DLp---Gh~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 445 --------------QDLP---GHADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred --------------ccCC---CCCceEEEEEecCCCceeecCCCceEEEeec
Confidence 1122 3378888888888888888888888888884
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-45 Score=381.83 Aligned_cols=614 Identities=13% Similarity=0.172 Sum_probs=414.8
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE--
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-- 425 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-- 425 (1101)
..++-+|... ++|- -....|.+||.+..+.- +++..|..+++|+|||++|+|+|+|-
T Consensus 41 ~gLa~~p~Sg-l~aY-pAGCvVVlfn~~~~tQ~-------------------hlvnssRk~~t~vAfS~~GryvatGEcG 99 (1080)
T KOG1408|consen 41 NGLASVPCSG-LCAY-PAGCVVVLFNVDSCTQS-------------------HLVNSSRKPLTCVAFSQNGRYVATGECG 99 (1080)
T ss_pred Cccccccccc-ceee-ccCcEEEEEcccccchh-------------------heecccCcceeEEEEcCCCcEEEecccC
Confidence 4555666554 3332 23457889998765533 34667888999999999999999985
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec--CCceEEEEEcCCceeEEeecCCcCeEEEecc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~--~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
....++||++.....+. ++..|.-.|+|++|+|.++ ++++.+ .|-.|.+||-.-.....-..-...|..++|+
T Consensus 100 ~~pa~kVw~la~h~vVA---EfvdHKY~vtcvaFsp~~k--yvvSVGsQHDMIVnv~dWr~N~~~asnkiss~Vsav~fs 174 (1080)
T KOG1408|consen 100 RTPASKVWSLAFHGVVA---EFVDHKYNVTCVAFSPGNK--YVVSVGSQHDMIVNVNDWRVNSSGASNKISSVVSAVAFS 174 (1080)
T ss_pred CCccceeeeeccccchh---hhhhccccceeeeecCCCc--EEEeeccccceEEEhhhhhhcccccccccceeEEEEEEc
Confidence 56679999999876555 7889999999999999999 677665 4556788882222222222345678899986
Q ss_pred cCCCccEEEEeccCCeEEEEecCCCCeee---eccCCCCceEEEEE------------ccCCCEEEEeecCCCCCceEEE
Q 001319 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLY------------SADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 504 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~------------s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
. ||.++++.+ ...|++|.++...... .+.+.....-.+.+ ..+..+.++. .|.+.-
T Consensus 175 E--dgSYfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~------qGhLvE 245 (1080)
T KOG1408|consen 175 E--DGSYFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITA------QGHLVE 245 (1080)
T ss_pred c--CCceeeeee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEec------ccceee
Confidence 5 778888776 6799999987765211 01111000000100 0111111111 222221
Q ss_pred EeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc----------------------C
Q 001319 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA----------------------E 626 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~----------------------~ 626 (1101)
+ .+.+++.++.........+++.+ .+++++|+.+|.|++|+..+-.-..+++. .
T Consensus 246 F--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~ 321 (1080)
T KOG1408|consen 246 F--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSP 321 (1080)
T ss_pred e--chhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccccccchhhcccccccccccCc
Confidence 1 22222222222222244556665 57999999999999999877554443321 1
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceecc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 706 (1101)
...+...++.|++....|.+...|..++|||+++..+.-+.. ..-.+...
T Consensus 322 a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~---s~lyHS~c--------------------------- 371 (1080)
T KOG1408|consen 322 AIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCS---SMLYHSAC--------------------------- 371 (1080)
T ss_pred ccCCceeEEEecCCCceEEEEEcCceEEEEecccccccccee---eeeeccce---------------------------
Confidence 112334578899999999999999999999998653221111 11001111
Q ss_pred CCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCC--CCeee-----
Q 001319 707 SPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS--GKATA----- 779 (1101)
Q Consensus 707 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~--~~~~~----- 779 (1101)
+|.+....- .-|... .+.-|.+- ++++++|++|++|++........ .....
T Consensus 372 ---------iW~Ve~~p~---------nv~~~~---~aclp~~c-F~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~k 429 (1080)
T KOG1408|consen 372 ---------IWDVENLPC---------NVHSPT---AACLPRGC-FTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSK 429 (1080)
T ss_pred ---------eeeeccccc---------cccCcc---cccCCccc-eeEecCCCcEEEeecccccccceeecccchhhhhc
Confidence 333322110 001110 11122333 89999999999999875211000 00000
Q ss_pred ----eccccc-cccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEE
Q 001319 780 ----SAVPQH-WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAF 853 (1101)
Q Consensus 780 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 853 (1101)
..+.+. -+...+..-............++++++||||++||+|+ .|.++||++...+....+..|..+|.|+.|
T Consensus 430 i~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLey 509 (1080)
T KOG1408|consen 430 IPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEY 509 (1080)
T ss_pred CccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEee
Confidence 000000 01111110000011113566799999999999999999 799999999999999999999999999999
Q ss_pred ecC--CCCEEEEEeCCCcEEEEEeecc-eEEEeeccCCCCeeEEEEcCCC--CEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 854 HPQ--DNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLAFSTSL--NILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 854 s~~--~~~~la~g~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~~s~d~--~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
|.. ..++||+++.|.-|.|||+... .++.++.+|+..|+++.|...| ..++++|.|+.|.+--.........+..
T Consensus 510 S~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r 589 (1080)
T KOG1408|consen 510 SFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPR 589 (1080)
T ss_pred cCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccc
Confidence 863 3579999999999999999754 5678899999999999998877 7899999999876544332111111111
Q ss_pred eecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 929 HIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 929 ~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
....- ....+..+++.|..+++++ +.|+.|+||++.++++++.+++.++|.+....+...|.|-||++...|.++.++
T Consensus 590 ~t~t~-~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~ 668 (1080)
T KOG1408|consen 590 HTQTL-SKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFV 668 (1080)
T ss_pred ccccc-ccceEEEeeeCCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEE
Confidence 11111 1157889999999999998 569999999999999999999999999999999999999999999999999999
Q ss_pred eCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1008 DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1008 d~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
|.-+|++++++.+ |+. .++++.|.+ |-.-|++.+.||+|.||.+..
T Consensus 669 Df~sgEcvA~m~G----------HsE--~VTG~kF~n-DCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 669 DFVSGECVAQMTG----------HSE--AVTGVKFLN-DCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred EeccchhhhhhcC----------cch--heeeeeecc-cchhheeecCCceEEEEECch
Confidence 9999999998875 665 457999999 789999999999999999964
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=340.68 Aligned_cols=341 Identities=18% Similarity=0.294 Sum_probs=288.0
Q ss_pred CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccc-cc----cCCc
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI-FK----DVPI 407 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~~----~h~~ 407 (1101)
.|....+.++|+.+|.+++|+|-..-++|+|+.|-..++|++....-.... ...+++.+ .. ....
T Consensus 167 I~~~~~kvl~~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~----------q~~lrh~~~~~~~s~~~nk 236 (524)
T KOG0273|consen 167 IPSSKAKVLRHESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGST----------QLVLRHCIREGGKSVPSNK 236 (524)
T ss_pred ccccceeeccCCCceEEEecCchhhhhhhccCCccceeeeeehhhccccch----------hhhhhhhhhhhcccCCccC
Confidence 455566777899999999999987657899999999999998741110000 00001000 11 1246
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
.|++++|+.+|..||+|+.||.+++|+...+. +. ++..|.++|.++.|+.+|. +|++++.|+++.+|| .+|..
T Consensus 237 dVT~L~Wn~~G~~LatG~~~G~~riw~~~G~l-~~---tl~~HkgPI~slKWnk~G~--yilS~~vD~ttilwd~~~g~~ 310 (524)
T KOG0273|consen 237 DVTSLDWNNDGTLLATGSEDGEARIWNKDGNL-IS---TLGQHKGPIFSLKWNKKGT--YILSGGVDGTTILWDAHTGTV 310 (524)
T ss_pred CcceEEecCCCCeEEEeecCcEEEEEecCchh-hh---hhhccCCceEEEEEcCCCC--EEEeccCCccEEEEeccCceE
Confidence 89999999999999999999999999998753 33 6889999999999999999 899999999999999 99999
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceE
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 566 (1101)
.+.+.-|..+-..|.|... .-+++++.|+.|+++.+....+..++.+|.+.|.++.|.|.|.+|++++. |+++
T Consensus 311 ~q~f~~~s~~~lDVdW~~~---~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~Sd----D~Tl 383 (524)
T KOG0273|consen 311 KQQFEFHSAPALDVDWQSN---DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSD----DGTL 383 (524)
T ss_pred EEeeeeccCCccceEEecC---ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecC----CCee
Confidence 9999999998777888532 47899999999999999999999999999999999999999999999996 9999
Q ss_pred EEEeCCCCeeEEEecccCCcceEEEEEeCCC---------CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 567 VEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---------NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---------~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
+||..........+.+|.+ .|..+.|+|+| ..+++++.|++|++||+..+.++..+..|. .+|.+++|
T Consensus 384 kiWs~~~~~~~~~l~~Hsk-ei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~--~pVysvaf 460 (524)
T KOG0273|consen 384 KIWSMGQSNSVHDLQAHSK-EIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQ--EPVYSVAF 460 (524)
T ss_pred EeeecCCCcchhhhhhhcc-ceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCC--CceEEEEe
Confidence 9999999999999999988 78889999876 368899999999999999999999987654 48999999
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
+|+|+++++|+.||.|.+|+..++ +.++...
T Consensus 461 S~~g~ylAsGs~dg~V~iws~~~~-~l~~s~~------------------------------------------------ 491 (524)
T KOG0273|consen 461 SPNGRYLASGSLDGCVHIWSTKTG-KLVKSYQ------------------------------------------------ 491 (524)
T ss_pred cCCCcEEEecCCCCeeEeccccch-heeEeec------------------------------------------------
Confidence 999999999999999999999877 3332221
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
..+.|..+.|+.+|..+.++.+||.+++-|+
T Consensus 492 ------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldl 522 (524)
T KOG0273|consen 492 ------------------GTGGIFELCWNAAGDKLGACASDGSVCVLDL 522 (524)
T ss_pred ------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEEe
Confidence 3455888999999999999999999998775
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-38 Score=337.39 Aligned_cols=586 Identities=15% Similarity=0.154 Sum_probs=438.1
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCe
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~ 429 (1101)
..|..-|+.++++.+-+.++.+||.+.-..+.. -+.+...|+|++=. ..++.+++.. .
T Consensus 39 ~~~~~~~~~~~vtt~vgksfqvYd~~kl~ll~v-------------------s~~lp~~I~alas~--~~~vy~A~g~-~ 96 (910)
T KOG1539|consen 39 FRVVALGSTFYVTTCVGKSFQVYDVNKLNLLFV-------------------SKPLPDKITALASD--KDYVYVASGN-K 96 (910)
T ss_pred eeeeecCceEEEEEecCceEEEEeccceEEEEe-------------------cCCCCCceEEEEec--CceEEEecCc-E
Confidence 445555666778888999999999987666542 23577899999865 4455555433 4
Q ss_pred EEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-cee---EEe-ecCCcCeEEEecc
Q 001319 430 IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKL---FNF-EGHEAPVYSICPH 503 (1101)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~---~~~-~~h~~~v~~v~~~ 503 (1101)
|.+|-. |+.++. .+.+|.+.|.-+.- =|. .++++..++.+.||+ ..+ ..+ ..+ +...+.|+++. +
T Consensus 97 i~~~~r--gk~i~~--~~~~~~a~v~~l~~--fGe--~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-H 167 (910)
T KOG1539|consen 97 IYAYAR--GKHIRH--TTLLHGAKVHLLLP--FGE--HLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-H 167 (910)
T ss_pred EEEEEc--cceEEE--EeccccceEEEEee--ecc--eEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-c
Confidence 666653 444443 45677777776654 355 689999999999999 443 221 122 22223377775 5
Q ss_pred cCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc
Q 001319 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1101)
Q Consensus 504 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1101)
|+---+.++.|+.+|.+.+|++++++.+.++......|+++.-+|-=..++.|.. +|+|.+++++.++.+.+|+..
T Consensus 168 P~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~----~G~ViifNlK~dkil~sFk~d 243 (910)
T KOG1539|consen 168 PSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLE----NGTVIIFNLKFDKILMSFKQD 243 (910)
T ss_pred chhheeeEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEecc----CceEEEEEcccCcEEEEEEcc
Confidence 5444456889999999999999999999999999999999999999889999885 999999999999999999876
Q ss_pred CCcceEEEEEeCCCCEEEE-EeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccc
Q 001319 584 RKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
.+ .|+.++|..||+.+++ |+..|.+.+||++..+++..+.. .|.+.|....|-|....+++++.|+.+++|-.+++.
T Consensus 244 ~g-~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~n-ah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~d 321 (910)
T KOG1539|consen 244 WG-RVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRN-AHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGD 321 (910)
T ss_pred cc-ceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeec-cccCCcccceecCCCceEeeccCCCceeEEEeeCCC
Confidence 44 8999999999987665 55779999999999888877652 234578999999999999999999999998766442
Q ss_pred cccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEE
Q 001319 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVR 742 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 742 (1101)
...+.+ +. ..+|..+..+
T Consensus 322 g~pR~L------------------------------------------------------------R~--R~GHs~Pp~~ 339 (910)
T KOG1539|consen 322 GVPRLL------------------------------------------------------------RS--RGGHSAPPSC 339 (910)
T ss_pred Ccchhe------------------------------------------------------------ee--ccCCCCCchh
Confidence 111111 11 1458888888
Q ss_pred EEee-cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC-----C
Q 001319 743 LLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-----D 816 (1101)
Q Consensus 743 ~~~s-~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-----g 816 (1101)
+.|. .+|..++.++.|++.+.+++....+...-.. .................-.-.+|..+++... .
T Consensus 340 irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~-------~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 340 IRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQ-------LHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred eeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcc-------cccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 8887 7888999999999988887654322111000 0011110000000000012345666666542 1
Q ss_pred CeEEEE-cCCeEEEEECCCceE-EEEee-----CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee---cc
Q 001319 817 SYVMSA-TGGKISLFNMMTFKV-MTTFM-----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL---KG 886 (1101)
Q Consensus 817 ~~la~~-~dg~i~vwd~~~~~~-~~~~~-----~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~---~~ 886 (1101)
..++.. ++...+.|+..+... ...+. .....+++++.++ .|++.+.|...|.|.+|++.+|-....+ ..
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~-CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a 491 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSF-CGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA 491 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEec-cCceEEEeccCCeEEEEEcccCeeecccccCcc
Confidence 233333 256799999976554 22222 2336799999999 9999999999999999999999888888 58
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcC
Q 001319 887 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS 965 (1101)
Q Consensus 887 h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~ 965 (1101)
|.++|++++...-++.+++++.+|.+++||......+....+. .++..+..+.....+++ .+|-.|.++|..
T Consensus 492 h~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~-------~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~ 564 (910)
T KOG1539|consen 492 HKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRLG-------SSITGIVYHRVSDLLAIALDDFSIRVVDVV 564 (910)
T ss_pred ccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeeccC-------CCcceeeeeehhhhhhhhcCceeEEEEEch
Confidence 9999999999888899999999999999999987644443332 56778888888887777 568899999999
Q ss_pred CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 966 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 966 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
+-+.++.+.+| ...|++++|||||+||++++.|++|++||+.++.++-.+.. .. .++++.|+|
T Consensus 565 t~kvvR~f~gh---~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~~~v-----------d~--~~~sls~SP- 627 (910)
T KOG1539|consen 565 TRKVVREFWGH---GNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDGLLV-----------DS--PCTSLSFSP- 627 (910)
T ss_pred hhhhhHHhhcc---ccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeeeEec-----------CC--cceeeEECC-
Confidence 99999999876 99999999999999999999999999999999999887762 22 346899999
Q ss_pred CCCEEEEEECC-CeEEEEeCCC
Q 001319 1046 EPNQFAIGLTD-GSVKVMEPSE 1066 (1101)
Q Consensus 1046 d~~~l~s~~~D-g~v~iWd~~~ 1066 (1101)
.+++|+|+..| ..|++|.=.+
T Consensus 628 ngD~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 628 NGDFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CCCEEEEEEecCceEEEEEchh
Confidence 59999999999 6799997443
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=337.95 Aligned_cols=283 Identities=17% Similarity=0.266 Sum_probs=265.5
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC--C
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--g 418 (1101)
++.+.+|..+.||+|++ ++|||+-+|.+++|+..+...+. +|.||...|.++.|+|. +
T Consensus 172 ~gd~rPis~~~fS~ds~-~laT~swsG~~kvW~~~~~~~~~-------------------~l~gH~~~v~~~~fhP~~~~ 231 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSK-HLATGSWSGLVKVWSVPQCNLLQ-------------------TLRGHTSRVGAAVFHPVDSD 231 (459)
T ss_pred ccCCCcceeeEeecCCC-eEEEeecCCceeEeecCCcceeE-------------------EEeccccceeeEEEccCCCc
Confidence 45677999999999998 67999999999999999886654 49999999999999996 6
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
..||+|+.||+|++|++.+...+. .+.+|...|..++|+|+|+ +|+|++.|.+-++|| .++..+....||...|
T Consensus 232 ~~lat~s~Dgtvklw~~~~e~~l~---~l~gH~~RVs~VafHPsG~--~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v 306 (459)
T KOG0272|consen 232 LNLATASADGTVKLWKLSQETPLQ---DLEGHLARVSRVAFHPSGK--FLGTASFDSTWRLWDLETKSELLLQEGHSKGV 306 (459)
T ss_pred cceeeeccCCceeeeccCCCcchh---hhhcchhhheeeeecCCCc--eeeecccccchhhcccccchhhHhhccccccc
Confidence 799999999999999999987766 7889999999999999999 899999999999999 8888888999999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.+++|++ ||.++++|+.|..-||||++++.++..+.+|...|.+++|+|+|..+++|+. |++++|||++..+.+
T Consensus 307 ~~iaf~~--DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~----Dnt~kVWDLR~r~~l 380 (459)
T KOG0272|consen 307 FSIAFQP--DGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSS----DNTCKVWDLRMRSEL 380 (459)
T ss_pred ceeEecC--CCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCC----CCcEEEeeecccccc
Confidence 9999988 7789999999999999999999999999999999999999999999999985 999999999999999
Q ss_pred EEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 656 (1101)
.++.+|.+ .|+.++|+| .|.+|++++.|+++++|.-.+..+++.+.+|.. .|.++.+++|+..+++++.|+++++|
T Consensus 381 y~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~--kV~s~Dis~d~~~i~t~s~DRT~KLW 457 (459)
T KOG0272|consen 381 YTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEG--KVISLDISPDSQAIATSSFDRTIKLW 457 (459)
T ss_pred eecccccc-hhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCcc--ceEEEEeccCCceEEEeccCceeeec
Confidence 99999988 899999998 688999999999999999999999999987755 89999999999999999999999999
Q ss_pred E
Q 001319 657 A 657 (1101)
Q Consensus 657 d 657 (1101)
.
T Consensus 458 ~ 458 (459)
T KOG0272|consen 458 R 458 (459)
T ss_pred c
Confidence 5
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-38 Score=329.99 Aligned_cols=583 Identities=14% Similarity=0.177 Sum_probs=400.4
Q ss_pred eeEeecCCCcEEEEEEecCCc--eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 337 VAVSLHQGSTVISMDFHPSHQ--TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~--~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
....-+|..+|+|+.|-|+.+ -.+++|+.|+.|++|.+........ ..+.+|...+.|+
T Consensus 47 ~t~l~GH~a~VnC~~~l~~s~~~a~~vsG~sD~~v~lW~l~~~~~~~i-----------------~~~~g~~~~~~cv-- 107 (764)
T KOG1063|consen 47 VTTLDGHVARVNCVHWLPTSEIVAEMVSGDSDGRVILWKLRDEYLIKI-----------------YTIQGHCKECVCV-- 107 (764)
T ss_pred EEeccCCccceEEEEEcccccccceEEEccCCCcEEEEEEeehheEEE-----------------EeecCcceeEEEE--
Confidence 334445999999999999876 1358999999999999984333321 2356665555554
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeee--cccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC--ceeEE
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKLFN 489 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~--~~~~~ 489 (1101)
+..-....+...|+.+.+||.+..+. .....+. .-..--.|+++.++.+..+++.|+.+..|.++. ..+ +.+..
T Consensus 108 ~a~~~~~~~~~ad~~v~vw~~~~~e~-~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~e 186 (764)
T KOG1063|consen 108 VARSSVMTCKAADGTVSVWDKQQDEV-FLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDLYSSSADSFARVAE 186 (764)
T ss_pred EeeeeEEEeeccCceEEEeecCCCce-eeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEEeccCCcceeEEEE
Confidence 43333333336899999999965541 1111111 112233567777866655788888888999998 533 45678
Q ss_pred eecCCcCeEEEecccCCC-ccEEEEeccCCeEEEEecCCCC------------------------ee-------eeccCC
Q 001319 490 FEGHEAPVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMG------------------------SR-------VDYDAP 537 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~------------------------~~-------~~~~~~ 537 (1101)
+.||.+.|.+++|..... .-+|+++|.|..||+|.+.... .. ..+.+|
T Consensus 187 l~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GH 266 (764)
T KOG1063|consen 187 LEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGH 266 (764)
T ss_pred eeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCc
Confidence 899999999999976543 4678999999999999774332 00 023478
Q ss_pred CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC--eeEEEec----ccCCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYA----GFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 538 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~----~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
..+|.++.|+|.+..|++++. |.++.+|...+. --+.... ++........-|+|+++.+++-+.-|..++
T Consensus 267 eDWV~sv~W~p~~~~LLSASa----DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hl 342 (764)
T KOG1063|consen 267 EDWVYSVWWHPEGLDLLSASA----DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHL 342 (764)
T ss_pred ccceEEEEEccchhhheeccc----CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEE
Confidence 899999999999998998886 889999987654 2222221 122224667889999999999999999999
Q ss_pred EECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccc
Q 001319 612 WDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1101)
Q Consensus 612 wd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 690 (1101)
|... ...........+|...|.+++|+|.|.+|.+.+.|.+-|++..-..+.....+..+
T Consensus 343 Wkt~d~~~w~~~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRP------------------- 403 (764)
T KOG1063|consen 343 WKTKDKTFWTQEPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARP------------------- 403 (764)
T ss_pred EeccCccceeeccccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeeccc-------------------
Confidence 9832 23334444455677799999999999999999999999998654221111111110
Q ss_pred cccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC
Q 001319 691 SAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 770 (1101)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~ 770 (1101)
..|.-.++++++-+....+++++.+..+|+++....-
T Consensus 404 -------------------------------------------QiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~f 440 (764)
T KOG1063|consen 404 -------------------------------------------QIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSF 440 (764)
T ss_pred -------------------------------------------ccccccceeeehccCCceeeecccceeeeeecCcHHH
Confidence 1255556666666655556666666666666643210
Q ss_pred ----------------CCCCCCee-----------------------------eeccccccccCCcc--------ceeec
Q 001319 771 ----------------QNPSGKAT-----------------------------ASAVPQHWLPSSGL--------LMAND 797 (1101)
Q Consensus 771 ----------------~~~~~~~~-----------------------------~~~~~~~~~~~~~~--------~~~~~ 797 (1101)
..+.+... ......+..+.... .....
T Consensus 441 v~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~K 520 (764)
T KOG1063|consen 441 VKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHK 520 (764)
T ss_pred HHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHH
Confidence 00000000 00000111111100 01111
Q ss_pred cCCCCCCCCEeEEEecCCCCeEEEEc-C-----CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEE
Q 001319 798 VAGVNLEEAVPCIALSKNDSYVMSAT-G-----GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 871 (1101)
Q Consensus 798 ~~~~~~~~~v~~~~~s~dg~~la~~~-d-----g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~ 871 (1101)
+ .+|...|.+++.+|+|+++|++. . ..|++|+..+...+..+.+|.-.|+.++||| |+++|++.+.|.++.
T Consensus 521 L--YGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSp-dg~~LLsvsRDRt~s 597 (764)
T KOG1063|consen 521 L--YGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSP-DGRYLLSVSRDRTVS 597 (764)
T ss_pred h--ccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECC-CCcEEEEeecCceEE
Confidence 2 36999999999999999999985 1 2499999999999999999999999999999 999999999999999
Q ss_pred EEEeecceE----EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC
Q 001319 872 IYNVRVDEV----KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 872 iwd~~~~~~----~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
+|....... ....+.|+.-|.+..|+|++++++|+|.|++|++|............+ ........++++++.|-
T Consensus 598 l~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~--a~~~~~~aVTAv~~~~~ 675 (764)
T KOG1063|consen 598 LYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRF--ACLKFSLAVTAVAYLPV 675 (764)
T ss_pred eeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhh--chhccCCceeeEEeecc
Confidence 999865422 233678999999999999999999999999999999988732111111 11112267888888763
Q ss_pred ----CC-EEEEEe-CCeEEEEEcC---------CceeeeEeccCCCCCCCEEEEEEccC----------CCEEEEEeCCC
Q 001319 948 ----QV-RMLVVH-ETQLAIYDAS---------KMERIRQWTPQDALSAPISCAVYSCN----------SQLVFATFCDG 1002 (1101)
Q Consensus 948 ----~~-~l~~~~-d~~i~v~d~~---------~~~~~~~~~~~~~h~~~v~~v~~s~d----------g~~l~s~~~dg 1002 (1101)
.. .+++|- .|.|.+|... +......+....+|...|+.+.|+|- ...|++|++|.
T Consensus 676 ~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~ 755 (764)
T KOG1063|consen 676 DHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDE 755 (764)
T ss_pred ccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeecccc
Confidence 22 455554 8999999865 12223334444567889999999974 23569999999
Q ss_pred cEEEEeCC
Q 001319 1003 NIGVFDAD 1010 (1101)
Q Consensus 1003 ~i~vwd~~ 1010 (1101)
.++|+++.
T Consensus 756 ~vri~nv~ 763 (764)
T KOG1063|consen 756 SVRIFNVD 763 (764)
T ss_pred eeEEeecc
Confidence 99999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-38 Score=330.06 Aligned_cols=474 Identities=16% Similarity=0.267 Sum_probs=358.7
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+++.|.+|.|+|....+ .++-..|.|.|||.++...+.. +.-..-+|.+..|-+..++++
T Consensus 12 rSdRVKsVd~HPtePw~-la~LynG~V~IWnyetqtmVks-------------------feV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 12 RSDRVKSVDFHPTEPWI-LAALYNGDVQIWNYETQTMVKS-------------------FEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred cCCceeeeecCCCCceE-EEeeecCeeEEEecccceeeee-------------------eeecccchhhheeeeccceEE
Confidence 78899999999999865 5567899999999999887763 444567999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v 500 (1101)
+|+.|..|+||+..+++.+. .+..|.+.|++++.+|... +++|+|+|-+|++|| ..-.+.++|.||+..|.++
T Consensus 72 ~GsDD~~IrVfnynt~ekV~---~FeAH~DyIR~iavHPt~P--~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv 146 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVK---TFEAHSDYIRSIAVHPTLP--YVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQV 146 (794)
T ss_pred EecCCceEEEEecccceeeE---EeeccccceeeeeecCCCC--eEEecCCccEEEEeeccCceeeeeEEcCcceEEEEE
Confidence 99999999999999998777 7889999999999999998 899999999999999 4456789999999999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCC--CEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--SRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~--~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+|.|. |.+.+++++.|++|++|.+....+.+++.+|...|+|+.+-+-| .+|++|+. |..|++||.++..+++
T Consensus 147 ~fnPk-D~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaD----D~tiKvWDyQtk~CV~ 221 (794)
T KOG0276|consen 147 AFNPK-DPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGAD----DLTIKVWDYQTKSCVQ 221 (794)
T ss_pred EecCC-CccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCC----CceEEEeecchHHHHH
Confidence 99997 45789999999999999999999999999999999999998755 58999985 8999999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++.||.+ .+..++|+|.-..+++|++||+++||+..+.++..++.... ..+.|++-.+.++.+++|.++|.|.+ .+
T Consensus 222 TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE~tLn~gl--eRvW~I~~~k~~~~i~vG~Deg~i~v-~l 297 (794)
T KOG0276|consen 222 TLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSKTYKLEKTLNYGL--ERVWCIAAHKGDGKIAVGFDEGSVTV-KL 297 (794)
T ss_pred Hhhcccc-cceEEEecCCCcEEEEecCCccEEEecCcceehhhhhhcCC--ceEEEEeecCCCCeEEEeccCCcEEE-Ec
Confidence 9999998 89999999999999999999999999999998888877654 38999999999999999999888765 22
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.... ..+...+.|+. +|... +
T Consensus 298 gree------------------P~vsMd~~gKI------------------------iwa~~-----------------~ 318 (794)
T KOG0276|consen 298 GREE------------------PAVSMDSNGKI------------------------IWAVH-----------------S 318 (794)
T ss_pred cCCC------------------CceeecCCccE------------------------EEEcC-----------------c
Confidence 2110 01122222211 11111 0
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCC-CCCCEeEEEecCCCC
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN-LEEAVPCIALSKNDS 817 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~s~dg~ 817 (1101)
.|..+. +-+.+.++ +...|+.+.....+.+ ..-....++-||+|+
T Consensus 319 ei~~~~-------~ks~~~~~---------------------------ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGr 364 (794)
T KOG0276|consen 319 EIQAVN-------LKSVGAQK---------------------------EVTDGERLPLSVKELGSVEIYPQTLAHSPNGR 364 (794)
T ss_pred eeeeee-------ceeccCcc---------------------------cccCCccccchhhhccccccchHHhccCCCCc
Confidence 111100 00000000 1222222222111111 111223578899999
Q ss_pred eEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
++++++||.-.||..-..+- ...+.-....|++ |....|+-..++.|+++ ++.+....+...-. +..+
T Consensus 365 fV~VcgdGEyiIyTala~Rn-----K~fG~~~eFvw~~-dsne~avRes~~~vki~--knfke~ksi~~~~~---~e~i- 432 (794)
T KOG0276|consen 365 FVVVCGDGEYIIYTALALRN-----KAFGSGLEFVWAA-DSNEFAVRESNGNVKIF--KNFKEHKSIRPDMS---AEGI- 432 (794)
T ss_pred EEEEecCccEEEEEeeehhh-----cccccceeEEEcC-CCCeEEEEecCCceEEE--ecceeccccccccc---eeee-
Confidence 99999999988886422211 2345667789999 77777888889999998 56666555542211 1111
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 898 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
-.|.+|...+ ++.+++||-++++.+....+ ....+.|+.+|.+++++.|...+++...
T Consensus 433 ~gg~Llg~~s-s~~~~fydW~~~~lVrrI~v---------~~k~v~w~d~g~lVai~~d~Sfyil~~n 490 (794)
T KOG0276|consen 433 FGGPLLGVRS-SDFLCFYDWESGELVRRIEV---------TSKHVYWSDNGELVAIAGDDSFYILKFN 490 (794)
T ss_pred cCCceEEEEe-CCeEEEEEcccceEEEEEee---------ccceeEEecCCCEEEEEecCceeEEEec
Confidence 2344555444 56699999999887665543 3457899999999999887776666544
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-38 Score=335.22 Aligned_cols=568 Identities=14% Similarity=0.176 Sum_probs=375.6
Q ss_pred CCCcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
|...++|+||||+|+| +|+|- ....+++|++.....+.. |..|...|+|++|+|.++|
T Consensus 77 sRk~~t~vAfS~~Gry-vatGEcG~~pa~kVw~la~h~vVAE-------------------fvdHKY~vtcvaFsp~~ky 136 (1080)
T KOG1408|consen 77 SRKPLTCVAFSQNGRY-VATGECGRTPASKVWSLAFHGVVAE-------------------FVDHKYNVTCVAFSPGNKY 136 (1080)
T ss_pred cCcceeEEEEcCCCcE-EEecccCCCccceeeeeccccchhh-------------------hhhccccceeeeecCCCcE
Confidence 6679999999999996 58874 456899999988766553 7789999999999999999
Q ss_pred EEEEEC--CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE---EeecCC
Q 001319 421 VGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF---NFEGHE 494 (1101)
Q Consensus 421 las~~~--d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~---~~~~h~ 494 (1101)
+++.+. |-.|.+||+...-... -..-...|..++|+.||. |+++.+ ...|++|. ..++... .+.+..
T Consensus 137 vvSVGsQHDMIVnv~dWr~N~~~a----snkiss~Vsav~fsEdgS--YfvT~g-nrHvk~wyl~~~~KykdpiPl~gRs 209 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVNVNDWRVNSSGA----SNKISSVVSAVAFSEDGS--YFVTSG-NRHVKLWYLQIQSKYKDPIPLPGRS 209 (1080)
T ss_pred EEeeccccceEEEhhhhhhccccc----ccccceeEEEEEEccCCc--eeeeee-eeeEEEEEeeccccccCCccccchh
Confidence 998664 6678899887543221 223456799999999999 788877 78999999 4343211 111111
Q ss_pred cCeEEEecccCCCccEEEEe-------------ccCCeEEEEecCCCCeeeec-cCCCCceEEEEEccCCCEEEEeecCC
Q 001319 495 APVYSICPHHKENIQFIFST-------------AIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~-------------~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.-.-.+.+ ..+++.+ +..|.+.-| ......-+. ......-.|++.+ .+++++|+.
T Consensus 210 ~~lg~lr~-----n~f~avaCg~gicAestfait~qGhLvEF--SsRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa-- 278 (1080)
T KOG1408|consen 210 YFLGNLRF-----NEFLAVACGVGICAESTFAITAQGHLVEF--SSRRLLDKWVQCRTTNANCICVS--SRLIACGCA-- 278 (1080)
T ss_pred hhcccccc-----chhhhhhhcCcccccceEEEecccceeee--chhhhhhhhhhhhccccceeeee--cceEEEeec--
Confidence 11111110 0111111 112222222 111111000 0011123455554 568888886
Q ss_pred CCCceEEEEeCCCCeeEEEecccC--------------------C---cceEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFR--------------------K---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~--------------------~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1101)
++.|++++..+-....++...+ . ...-.+.|++....|.+...|..++|||++.-
T Consensus 279 --~g~vrlFnp~tL~y~~Tlpr~halg~d~a~~~q~~~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~ 356 (1080)
T KOG1408|consen 279 --KGMVRLFNPETLDYAGTLPRSHALGSDTANLSQPEPKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDV 356 (1080)
T ss_pred --cceeeecCcchhhhccccccccccccchhhcccccccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEecccc
Confidence 9999999988754443332110 0 11223678888899999999999999999874
Q ss_pred eeeEee-ccCCCCCCCCeeEEec-----------CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeee
Q 001319 618 NILTST-DAEGGLPNLPRLRFSK-----------EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1101)
Q Consensus 618 ~~~~~~-~~~~~~~~v~~v~~s~-----------~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1101)
+.+... ..-.|...|+.+.--| -...+++++.|++|++|+++... .-..+.......... .+.+
T Consensus 357 ~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ct-nn~vyrRNils~~l~---ki~y 432 (1080)
T KOG1408|consen 357 NKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCT-NNQVYRRNILSANLS---KIPY 432 (1080)
T ss_pred ccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeeccccc-ccceeecccchhhhh---cCcc
Confidence 433211 1111222344433322 12358899999999999998641 111111111111100 0001
Q ss_pred eeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 686 KVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 686 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
..+...++--...+ +++.. .....+....+.+++++|+|++|+++..-|.+++|+
T Consensus 433 ~d~~~q~~~d~~~~----------------~fdka---------~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~ 487 (1080)
T KOG1408|consen 433 EDSTQQIMHDASAG----------------IFDKA---------LVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYD 487 (1080)
T ss_pred ccCchhhhhhccCC----------------ccccc---------chhhcCcccceEEEEECCCcceecccCccCceEEEE
Confidence 00000000000000 00000 000123556789999999999999999999999999
Q ss_pred ecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC---CCCeEEEEc-CCeEEEEECC-CceEEEE
Q 001319 766 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK---NDSYVMSAT-GGKISLFNMM-TFKVMTT 840 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~-~~~~~~~ 840 (1101)
+..-.. + ..+ ..|+.+|.|+.+|. ..++||+++ |.-|+|||+. +..++.+
T Consensus 488 Lq~l~~----------------------~-~~~--eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qt 542 (1080)
T KOG1408|consen 488 LQELEY----------------------T-CFM--EAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQT 542 (1080)
T ss_pred ehhhhh----------------------h-hhe--ecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhh
Confidence 763210 0 001 14999999999986 357899998 7789999986 4567888
Q ss_pred eeCCCCCeeEEEEecCCC--CEEEEEeCCCcEEEEEeecceEEEeeccC-----CCCeeEEEEcCCCCEEEEEeCCCcEE
Q 001319 841 FMSPPPASTFLAFHPQDN--NIIAIGTEDSTIHIYNVRVDEVKSKLKGH-----QKRITGLAFSTSLNILVSSGADAQLC 913 (1101)
Q Consensus 841 ~~~~~~~i~~l~~s~~~~--~~la~g~~dg~v~iwd~~~~~~~~~~~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~v~ 913 (1101)
+.+|...|+++.|.. .+ ..+++++.|..|.+--.....-...+..| ...+++++..|..+++++++.|..|+
T Consensus 543 ld~HSssITsvKFa~-~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnir 621 (1080)
T KOG1408|consen 543 LDGHSSSITSVKFAC-NGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRNIR 621 (1080)
T ss_pred hcccccceeEEEEee-cCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccceE
Confidence 999999999999988 44 67788889988776444322222223222 24689999999999999999999999
Q ss_pred EEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCC
Q 001319 914 VWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 992 (1101)
Q Consensus 914 lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 992 (1101)
||+++++++.+.+.-. .++. +....+...|.|.++++ ++|+++.+||..+|+++....+| ...|+.+.|++|.
T Consensus 622 if~i~sgKq~k~FKgs--~~~e-G~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH---sE~VTG~kF~nDC 695 (1080)
T KOG1408|consen 622 IFDIESGKQVKSFKGS--RDHE-GDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH---SEAVTGVKFLNDC 695 (1080)
T ss_pred EEeccccceeeeeccc--ccCC-CceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc---chheeeeeecccc
Confidence 9999999977655432 2222 56778899999999999 57999999999999999998876 8999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC
Q 001319 993 QLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 993 ~~l~s~~~dg~i~vwd~~~ 1011 (1101)
++|++.+.||.|.||.+..
T Consensus 696 kHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 696 KHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred hhheeecCCceEEEEECch
Confidence 9999999999999999985
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-39 Score=304.70 Aligned_cols=293 Identities=22% Similarity=0.312 Sum_probs=255.5
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
-+|++.|+.++..+.+..++.+++.|.++.+|++......... +.+.+.||...|..++.++||.+
T Consensus 12 ~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~--------------~~r~~~GHsH~v~dv~~s~dg~~ 77 (315)
T KOG0279|consen 12 EGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGV--------------PVRRLTGHSHFVSDVVLSSDGNF 77 (315)
T ss_pred cCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCc--------------eeeeeeccceEecceEEccCCce
Confidence 3599999999999998889999999999999999765332211 22358999999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecC--CcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH--EAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h--~~~v~ 498 (1101)
.++++.|+++++||+.+|+..+ .|.||...|.+++|++|++ -++||+.|++|++|+.-|.+..++..+ .+.|.
T Consensus 78 alS~swD~~lrlWDl~~g~~t~---~f~GH~~dVlsva~s~dn~--qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVs 152 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLATGESTR---RFVGHTKDVLSVAFSTDNR--QIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVS 152 (315)
T ss_pred EEeccccceEEEEEecCCcEEE---EEEecCCceEEEEecCCCc--eeecCCCcceeeeeeecccEEEEEecCCCcCcEE
Confidence 9999999999999999997666 6889999999999999999 699999999999999778887777654 78999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+++|+|+.+..+|++++.|++|++||+++.+....+.+|.+.++.+++||||...++|+. ++.+.+||+..++.+.
T Consensus 153 cvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgk----dg~~~LwdL~~~k~ly 228 (315)
T KOG0279|consen 153 CVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGK----DGEAMLWDLNEGKNLY 228 (315)
T ss_pred EEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCC----CceEEEEEccCCceeE
Confidence 999999987889999999999999999999999999999999999999999999999885 9999999999999988
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC-------CCCCCeeEEecCCCEEEEEEcCC
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
.+.... .|.+++|+|+. +.++...+..|+|||+.++..+..+..... ......++|++||..|+.|..|+
T Consensus 229 sl~a~~--~v~sl~fspnr-ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~ 305 (315)
T KOG0279|consen 229 SLEAFD--IVNSLCFSPNR-YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDN 305 (315)
T ss_pred eccCCC--eEeeEEecCCc-eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCC
Confidence 887643 69999999985 455555556699999999988877654321 22346789999999999999999
Q ss_pred cEEEEEcc
Q 001319 652 GFKILANA 659 (1101)
Q Consensus 652 ~i~iwd~~ 659 (1101)
.|++|.+.
T Consensus 306 ~irv~qv~ 313 (315)
T KOG0279|consen 306 VIRVWQVA 313 (315)
T ss_pred cEEEEEee
Confidence 99999864
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=329.37 Aligned_cols=284 Identities=21% Similarity=0.314 Sum_probs=260.1
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
|-+.+|..+.||+|++.||+|+-+|.++||+..+...+. ++.||.+.|.++.|+|.....-++||+.||++++|+ .
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~---~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~ 249 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQ---TLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLS 249 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeE---EEeccccceeeEEEccCCCccceeeeccCCceeeeccC
Confidence 456799999999999999999999999999999886555 799999999999999984222799999999999999 5
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
+..++..+.+|...|..++|+| +|++|++++.|.+-++||+++........+|...|.+++|.+||..+++|+.
T Consensus 250 ~e~~l~~l~gH~~RVs~VafHP--sG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGl---- 323 (459)
T KOG0272|consen 250 QETPLQDLEGHLARVSRVAFHP--SGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGL---- 323 (459)
T ss_pred CCcchhhhhcchhhheeeeecC--CCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCc----
Confidence 5588999999999999999998 6689999999999999999999999999999999999999999999999986
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EG 641 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g 641 (1101)
|..-+|||+++|+++..+.+|.+ .|..++|+|+|-.+++|+.|++++|||++..+.+.++..|.. -|..|.|+| .|
T Consensus 324 D~~~RvWDlRtgr~im~L~gH~k-~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n--lVS~Vk~~p~~g 400 (459)
T KOG0272|consen 324 DSLGRVWDLRTGRCIMFLAGHIK-EILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN--LVSQVKYSPQEG 400 (459)
T ss_pred cchhheeecccCcEEEEeccccc-ceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc--hhhheEecccCC
Confidence 88889999999999999999887 899999999999999999999999999999999888887755 799999999 78
Q ss_pred CEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
.+|++++.|+++++|...+. .+++.+
T Consensus 401 ~fL~TasyD~t~kiWs~~~~-~~~ksL----------------------------------------------------- 426 (459)
T KOG0272|consen 401 YFLVTASYDNTVKIWSTRTW-SPLKSL----------------------------------------------------- 426 (459)
T ss_pred eEEEEcccCcceeeecCCCc-ccchhh-----------------------------------------------------
Confidence 99999999999999998766 444444
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|.++|.++.+++++..+++++.|.++++|.
T Consensus 427 ------------aGHe~kV~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 427 ------------AGHEGKVISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred ------------cCCccceEEEEeccCCceEEEeccCceeeecc
Confidence 34999999999999999999999999999994
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-38 Score=342.67 Aligned_cols=275 Identities=19% Similarity=0.300 Sum_probs=239.8
Q ss_pred ccCCCCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceecc---ccceee---------cccccCc
Q 001319 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---KPFKIW---------DMAACSL 395 (1101)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~---~~~~~~---------d~~~~~~ 395 (1101)
..+.+|..+..++. ....|+|..||+|++ ++|.|..|..|++|.+...+.... ..+... +......
T Consensus 362 ~~~~lpSic~YT~~nt~~~v~ca~fSddss-mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~ 440 (707)
T KOG0263|consen 362 GRNSLPSICMYTFHNTYQGVTCAEFSDDSS-MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDS 440 (707)
T ss_pred CCCCCCcEEEEEEEEcCCcceeEeecCCcc-hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccC
Confidence 34567777887777 567899999999998 789999999999999985331110 000000 1111112
Q ss_pred cccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 396 PFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 396 ~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
....+++.||.++|..+.|+||.++|++|+.|++||+|.+.+..++. .++||..+|+++.|+|-|- ++||+|.|+
T Consensus 441 ~~~~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V---~y~GH~~PVwdV~F~P~Gy--YFatas~D~ 515 (707)
T KOG0263|consen 441 SGTSRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLV---IYKGHLAPVWDVQFAPRGY--YFATASHDQ 515 (707)
T ss_pred CceeEEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEE---EecCCCcceeeEEecCCce--EEEecCCCc
Confidence 22334589999999999999999999999999999999999987766 6789999999999999998 899999999
Q ss_pred eEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEE
Q 001319 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 476 ~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 554 (1101)
+.++|. ....+++.+.||.+.|.|+.|+| +..++++||.|.++|+||+.++.....+.+|..+|.+++|||+|++|+
T Consensus 516 tArLWs~d~~~PlRifaghlsDV~cv~FHP--Ns~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~La 593 (707)
T KOG0263|consen 516 TARLWSTDHNKPLRIFAGHLSDVDCVSFHP--NSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLA 593 (707)
T ss_pred eeeeeecccCCchhhhcccccccceEEECC--cccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEe
Confidence 999999 88899999999999999999999 558999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
+|+. ++.|.+||+.+++++..+.+|.+ .+.++.|+.+|..|++||.|.+|++||+..
T Consensus 594 Sg~e----d~~I~iWDl~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~~ 650 (707)
T KOG0263|consen 594 SGDE----DGLIKIWDLANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLTK 650 (707)
T ss_pred eccc----CCcEEEEEcCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEchh
Confidence 9986 99999999999999999999955 899999999999999999999999999865
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-39 Score=304.58 Aligned_cols=293 Identities=16% Similarity=0.252 Sum_probs=263.9
Q ss_pred cceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEE
Q 001319 335 RTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1101)
Q Consensus 335 ~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 413 (1101)
-+..+++. |...|.++.|++|.++ +++++.||.+.|||.-+..+++. ++-...+|..+|
T Consensus 45 ~~~rr~LkGH~~Ki~~~~ws~Dsr~-ivSaSqDGklIvWDs~TtnK~ha-------------------ipl~s~WVMtCA 104 (343)
T KOG0286|consen 45 MRTRRTLKGHLNKIYAMDWSTDSRR-IVSASQDGKLIVWDSFTTNKVHA-------------------IPLPSSWVMTCA 104 (343)
T ss_pred eeeEEEecccccceeeeEecCCcCe-EEeeccCCeEEEEEcccccceeE-------------------EecCceeEEEEE
Confidence 33445665 9999999999999996 58999999999999988776653 444678999999
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCc---ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 414 WSPDGNYVGVAFTKHLIQLYSYAGSN---DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~---~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
|+|.|+++|+|+.|+...||++.+.+ ..+...++.+|++.+.|+.|.+|++ |+|++.|.+..+|| .+|+.+..
T Consensus 105 ~sPSg~~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD~~---ilT~SGD~TCalWDie~g~~~~~ 181 (343)
T KOG0286|consen 105 YSPSGNFVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDDNH---ILTGSGDMTCALWDIETGQQTQV 181 (343)
T ss_pred ECCCCCeEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCCCc---eEecCCCceEEEEEcccceEEEE
Confidence 99999999999999999999998652 2344447899999999999999886 89999999999999 99999999
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
|.||.+.|.++.+.|+ +++.+++|+-|+..++||++.+.....+.+|...|++++|.|+|.-+++|+. |++.++|
T Consensus 182 f~GH~gDV~slsl~p~-~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSD----D~tcRly 256 (343)
T KOG0286|consen 182 FHGHTGDVMSLSLSPS-DGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSD----DATCRLY 256 (343)
T ss_pred ecCCcccEEEEecCCC-CCCeEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCC----CceeEEE
Confidence 9999999999999886 6789999999999999999999999999999999999999999999999986 9999999
Q ss_pred eCCCCeeEEEecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 570 NESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 570 d~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
|++..+.+..|.... ...+++++|+..|++|++|..|..+.+||.-.++.+..+.+|++ .|.++..+|||.-+++|+
T Consensus 257 DlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~vg~L~GHeN--RvScl~~s~DG~av~TgS 334 (343)
T KOG0286|consen 257 DLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGERVGVLAGHEN--RVSCLGVSPDGMAVATGS 334 (343)
T ss_pred eecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccceEEEeeccCC--eeEEEEECCCCcEEEecc
Confidence 999999888887543 23688999999999999999999999999999999999987755 899999999999999999
Q ss_pred cCCcEEEEE
Q 001319 649 ADNGFKILA 657 (1101)
Q Consensus 649 ~d~~i~iwd 657 (1101)
-|.+++||.
T Consensus 335 WDs~lriW~ 343 (343)
T KOG0286|consen 335 WDSTLRIWA 343 (343)
T ss_pred hhHheeecC
Confidence 999999994
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-37 Score=323.52 Aligned_cols=594 Identities=14% Similarity=0.168 Sum_probs=407.0
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC---EEEEEEC
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN---YVGVAFT 426 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~---~las~~~ 426 (1101)
..|.|.+ ++|.| ....|.+||..+.... ..+.||..+|+|+.|-|+.+ ++++|+.
T Consensus 20 ~sw~~~~--~vafG-a~~~Iav~dp~k~~i~-------------------t~l~GH~a~VnC~~~l~~s~~~a~~vsG~s 77 (764)
T KOG1063|consen 20 SSWGPGG--LVAFG-AGPAIAVADPEKILIV-------------------TTLDGHVARVNCVHWLPTSEIVAEMVSGDS 77 (764)
T ss_pred ccccccc--eEEec-CCceEEEeCcccceeE-------------------EeccCCccceEEEEEcccccccceEEEccC
Confidence 3346665 45665 5678999998765322 25899999999999999988 8999999
Q ss_pred CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc-CCc--eeEEeecCCcCe--EEEe
Q 001319 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGR--KLFNFEGHEAPV--YSIC 501 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~-~~~--~~~~~~~h~~~v--~~v~ 501 (1101)
|+.|++|.++. +.+.....+.+|...+.| +...-. .......|+++.+||. ..+ +...+.--.+.+ .|++
T Consensus 78 D~~v~lW~l~~-~~~~~i~~~~g~~~~~~c--v~a~~~--~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~ 152 (764)
T KOG1063|consen 78 DGRVILWKLRD-EYLIKIYTIQGHCKECVC--VVARSS--VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLA 152 (764)
T ss_pred CCcEEEEEEee-hheEEEEeecCcceeEEE--EEeeee--EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHh
Confidence 99999999994 334445567776655544 443322 2222378999999995 444 223333222333 3444
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCC--CeeeeccCCCCceEEEEEccCCC---EEEEeecCCCCCceEEEEeCCCCe-
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGS---RLFSCGTSKDGDSFLVEWNESEGT- 575 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~d~~---~l~~~~~~~~~~~~i~iwd~~~~~- 575 (1101)
+.+.++.-.++.|+.+..|.++.-.+. .....+.+|..+|.+++|...+. +|++++ +|..|+||.+.-+.
T Consensus 153 ~~~~~~~~lla~Ggs~~~v~~~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~S----QD~yIRiW~i~~~~~ 228 (764)
T KOG1063|consen 153 ALKNNKTFLLACGGSKFVVDLYSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSS----QDRYIRIWRIVLGDD 228 (764)
T ss_pred hhccCCcEEEEecCcceEEEEeccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecC----CceEEEEEEEEecCC
Confidence 555333345566777788888855433 44567889999999999987655 455555 58999999764221
Q ss_pred --------------------eE----------EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC--eeeEee
Q 001319 576 --------------------IK----------RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTST 623 (1101)
Q Consensus 576 --------------------~~----------~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~ 623 (1101)
.. ..+.||.+ .|.++.|+|.+..|++++.|.++.+|...+. -.+...
T Consensus 229 ~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeD-WV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~v 307 (764)
T KOG1063|consen 229 EDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHED-WVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVV 307 (764)
T ss_pred ccccccccccccccCCceeeeeeeEEEEEehhhhhcCccc-ceEEEEEccchhhheecccCcceEEEecCCccceEEEEE
Confidence 11 11237776 8999999999999999999999999987654 222222
Q ss_pred cc---CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCC
Q 001319 624 DA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1101)
Q Consensus 624 ~~---~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 700 (1101)
.. .+.........|+|+++.+++-+..|..++|...+.... ..
T Consensus 308 RlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w--~~-------------------------------- 353 (764)
T KOG1063|consen 308 RLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFW--TQ-------------------------------- 353 (764)
T ss_pred EeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccce--ee--------------------------------
Confidence 11 112234678899999999999999999999983322110 00
Q ss_pred cceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeee
Q 001319 701 CKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATAS 780 (1101)
Q Consensus 701 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~ 780 (1101)
.+.-.+|...|+.+.|.|.|.++++.+.|.+-|++---..+.
T Consensus 354 -----------------------------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~--------- 395 (764)
T KOG1063|consen 354 -----------------------------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQ--------- 395 (764)
T ss_pred -----------------------------ccccccccccceeeeecCCCCEEEEeccccceeeeccccccc---------
Confidence 011156999999999999999999999999999874221100
Q ss_pred ccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcC-CeEEEEECC--------------------------
Q 001319 781 AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMM-------------------------- 833 (1101)
Q Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d-g~i~vwd~~-------------------------- 833 (1101)
.|.- + .+-+-|...++|+++-+....+++|.| ..+|+|+..
T Consensus 396 ----~wHE----i----aRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~ 463 (764)
T KOG1063|consen 396 ----EWHE----I----ARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGAN 463 (764)
T ss_pred ----ceee----e----cccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccc
Confidence 0110 0 011127788888888775555666654 557777651
Q ss_pred -----------------CceE---------------------------------EEEeeCCCCCeeEEEEecCCCCEEEE
Q 001319 834 -----------------TFKV---------------------------------MTTFMSPPPASTFLAFHPQDNNIIAI 863 (1101)
Q Consensus 834 -----------------~~~~---------------------------------~~~~~~~~~~i~~l~~s~~~~~~la~ 863 (1101)
+|.. +..+.+|..+|.+++.+| +++++|+
T Consensus 464 VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~-~gnliAS 542 (764)
T KOG1063|consen 464 VPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISP-TGNLIAS 542 (764)
T ss_pred cccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecC-CCCEEee
Confidence 0100 012346778899999999 9999999
Q ss_pred EeCC-----CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 864 GTED-----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 864 g~~d-----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
++.. ..|++|+..+...+..+.+|+-.|+.|+|||||++|++.+.|.++.+|......... ..+.....|. .-
T Consensus 543 aCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e-~~fa~~k~Ht-RI 620 (764)
T KOG1063|consen 543 ACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDE-FRFACLKAHT-RI 620 (764)
T ss_pred hhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchh-hhhccccccc-eE
Confidence 9854 468999999988888999999999999999999999999999999999986543221 2222233343 67
Q ss_pred cceEEEcCCCCEEEEEe-CCeEEEEEcCCc--eeeeEeccCCCCCCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCC
Q 001319 939 DTRVQFNADQVRMLVVH-ETQLAIYDASKM--ERIRQWTPQDALSAPISCAVYSCN-----SQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~--~~~~~~~~~~~h~~~v~~v~~s~d-----g~~l~s~~~dg~i~vwd~~ 1010 (1101)
|.++.|+|++.++++++ |++|.||..... +.+..+.. ..+..+|+++++.|- +..++.|-+.|.|.+|...
T Consensus 621 IWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~-~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 621 IWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFAC-LKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred EEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhch-hccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 88999999999999855 999999999887 55554322 234889999999872 2367789999999999966
Q ss_pred CCceeEeeCCCC--cCCCcccCCCCccceEEEEEecCC---------CCEEEEEECCCeEEEEeCC
Q 001319 1011 TLRLRCYIAPST--YLSPSVLNGSQTVYPLVVAAHPLE---------PNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1011 ~~~~~~~~~~~~--~~~~~~~~h~~~~~~~~l~~~p~d---------~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.-.......... ......++|.. .+..+.|.|.. ...|++|++|..++++++.
T Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~~--aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 700 REHRQVTVGTFNLDTRLCATIGPDS--AVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred cccccccceeeeeccccccccChHH--hhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence 211111100000 00011122444 44578898752 2356999999999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-35 Score=316.21 Aligned_cols=559 Identities=13% Similarity=0.177 Sum_probs=414.4
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+.+.|.|++-+.+ +.+| + ..+.|.+|.- |+.+. +++.+|...|.-+. |=|.++
T Consensus 74 ~lp~~I~alas~~~--~vy~-A-~g~~i~~~~r--gk~i~------------------~~~~~~~a~v~~l~--~fGe~l 127 (910)
T KOG1539|consen 74 PLPDKITALASDKD--YVYV-A-SGNKIYAYAR--GKHIR------------------HTTLLHGAKVHLLL--PFGEHL 127 (910)
T ss_pred CCCCceEEEEecCc--eEEE-e-cCcEEEEEEc--cceEE------------------EEeccccceEEEEe--eecceE
Confidence 37789999987766 3333 2 3446777764 43332 24667887887765 458999
Q ss_pred EEEECCCeEEEEeecCC-cccc-cceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 422 GVAFTKHLIQLYSYAGS-NDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~-~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
.++..++.+.||+..++ +... ....++...+.|+++. +|..--..++.|+.+|.+.+|+ .+++.++++.++...|+
T Consensus 128 ia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP~TYLNKIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT 206 (910)
T KOG1539|consen 128 IAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HPSTYLNKIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRIT 206 (910)
T ss_pred EEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cchhheeeEEEeecCCcEEEEEeccCcEEEEeccccccee
Confidence 99999999999999885 2211 1111222223376664 4543222689999999999999 99999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
++.-+|.- ..++.|..+|+|.+++++..+.+..+....+.|++++|..||..+++.+. ..|.+.+||++..+.+.
T Consensus 207 ~ieqsPaL--DVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~---~~G~m~~wDLe~kkl~~ 281 (910)
T KOG1539|consen 207 AIEQSPAL--DVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGR---SNGDMAFWDLEKKKLIN 281 (910)
T ss_pred EeccCCcc--eEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEecc---CCceEEEEEcCCCeeee
Confidence 99877644 58999999999999999999999999988889999999999998877664 36889999999999988
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--CeeeEeeccCCCCCCCCeeEEe-cCCCEEEEEEcCCcEEE
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFS-KEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s-~~g~~l~~~~~d~~i~i 655 (1101)
.....+...+....|.|....+++++.|+.+++|=..+ |.+.......+|..+..++.|. .+|.++.+++.|++++.
T Consensus 282 v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~Pp~~irfy~~~g~~ilsa~~Drt~r~ 361 (910)
T KOG1539|consen 282 VTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSAPPSCIRFYGSQGHFILSAKQDRTLRS 361 (910)
T ss_pred eeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCCCchheeeeccCcEEEEecccCcchhh
Confidence 88755544788899999999999999999988885553 4222222223445578899998 68999999999999998
Q ss_pred EEccccccccccccC-CCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCC
Q 001319 656 LANAIGLRSLRAVEN-PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPEST 734 (1101)
Q Consensus 656 wd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 734 (1101)
+++..... -+.+.. +.. ...+.+ +. .....
T Consensus 362 fs~~~e~~-~~~l~~~~~~-------------~~~kk~------------------------------~~-----~~~~~ 392 (910)
T KOG1539|consen 362 FSVISESQ-SQELGQLHNK-------------KRAKKV------------------------------NV-----FSTEK 392 (910)
T ss_pred hhhhHHHH-hHhhcccccc-------------cccccc------------------------------cc-----cchhh
Confidence 88754411 111100 000 000000 00 00001
Q ss_pred CCcccEEEEEeecCc----ccEEEee-cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE
Q 001319 735 DTSSKVVRLLYTNSA----VGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 809 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~----~~l~~~~-~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 809 (1101)
....+|..+++...- ..++++. .+...+.|++.... .|...-...........+++
T Consensus 393 ~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~-------------------~G~~~L~~~~~~~~~~~~~a 453 (910)
T KOG1539|consen 393 LKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKT-------------------SGRHVLDPKRFKKDDINATA 453 (910)
T ss_pred hcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcc-------------------cccEEecCccccccCcceEE
Confidence 122344444443321 1234443 45677788765321 11100000000014467899
Q ss_pred EEecCCCCeEEEEc-CCeEEEEECCCceEEEEe---eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 810 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTF---MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 810 ~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
++.++.|.+.+.|+ .|.|.+|++++|-....+ ..|.++|+.++... -++.+++++.+|-+++||..+..++..++
T Consensus 454 v~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~-~n~~~vsa~~~Gilkfw~f~~k~l~~~l~ 532 (910)
T KOG1539|consen 454 VCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDG-TNRLLVSAGADGILKFWDFKKKVLKKSLR 532 (910)
T ss_pred EEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecC-CCceEEEccCcceEEEEecCCcceeeeec
Confidence 99999999999997 899999999999999998 58999999999987 78899999999999999999988877776
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEc
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDA 964 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~ 964 (1101)
-...+.++..+.....++.+..|-.|+++|+.+.+.. +.+.||. ..+++++|||||++|++++ |++|++||+
T Consensus 533 -l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvv-----R~f~gh~-nritd~~FS~DgrWlisasmD~tIr~wDl 605 (910)
T KOG1539|consen 533 -LGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVV-----REFWGHG-NRITDMTFSPDGRWLISASMDSTIRTWDL 605 (910)
T ss_pred -cCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhh-----HHhhccc-cceeeeEeCCCCcEEEEeecCCcEEEEec
Confidence 3456888999988889999999999999999986643 3455665 8999999999999999965 999999999
Q ss_pred CCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-CcEEEEeCCCC
Q 001319 965 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-GNIGVFDADTL 1012 (1101)
Q Consensus 965 ~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-g~i~vwd~~~~ 1012 (1101)
.++.++..+.. ..+++++.|||+|.+|||...| .-|++|.-.+.
T Consensus 606 pt~~lID~~~v----d~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 606 PTGTLIDGLLV----DSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred cCcceeeeEec----CCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 99999998877 7899999999999999999988 67999976653
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-35 Score=308.13 Aligned_cols=463 Identities=16% Similarity=0.225 Sum_probs=354.6
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+..+...|.++.|+|...+++++-.+|.|.|||.++...++ .+.-..-+|++..|-+--+ ++++|++|..|+||+
T Consensus 9 ~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVk---sfeV~~~PvRa~kfiaRkn--Wiv~GsDD~~IrVfn 83 (794)
T KOG0276|consen 9 FQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVK---SFEVSEVPVRAAKFIARKN--WIVTGSDDMQIRVFN 83 (794)
T ss_pred hhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeee---eeeecccchhhheeeeccc--eEEEecCCceEEEEe
Confidence 55589999999999999999999999999999999988877 5666788999999998877 899999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC-CeeeeccCCCCceEEEEEcc-CCCEEEEeec
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSCGT 558 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~ 558 (1101)
.+++.+..|..|.+.|.+++.+|.. .+++++|.|-+|++||.+.. .+..++.+|.+.|++++|.| |.+.+++++-
T Consensus 84 ynt~ekV~~FeAH~DyIR~iavHPt~--P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sL 161 (794)
T KOG0276|consen 84 YNTGEKVKTFEAHSDYIRSIAVHPTL--PYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASL 161 (794)
T ss_pred cccceeeEEeeccccceeeeeecCCC--CeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeec
Confidence 9999999999999999999999964 79999999999999999875 45678999999999999999 5678888886
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC--CCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
|++|++|.+.+..+..++.+|.. .|+++.+-+. ..++++|+.|.+++|||..+..+++++.+|.+ .|..+.
T Consensus 162 ----DrTVKVWslgs~~~nfTl~gHek-GVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~--Nvs~v~ 234 (794)
T KOG0276|consen 162 ----DRTVKVWSLGSPHPNFTLEGHEK-GVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN--NVSFVF 234 (794)
T ss_pred ----cccEEEEEcCCCCCceeeecccc-CcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc--cceEEE
Confidence 99999999999999999999988 8999999774 47999999999999999999999999998765 799999
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
|+|.-..+++|+.||+++||+..+- +....+
T Consensus 235 fhp~lpiiisgsEDGTvriWhs~Ty-~lE~tL------------------------------------------------ 265 (794)
T KOG0276|consen 235 FHPELPIIISGSEDGTVRIWNSKTY-KLEKTL------------------------------------------------ 265 (794)
T ss_pred ecCCCcEEEEecCCccEEEecCcce-ehhhhh------------------------------------------------
Confidence 9999999999999999999987654 111111
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
......+.+++..+.+..++.|.++|.+.+=
T Consensus 266 -----------------n~gleRvW~I~~~k~~~~i~vG~Deg~i~v~-------------------------------- 296 (794)
T KOG0276|consen 266 -----------------NYGLERVWCIAAHKGDGKIAVGFDEGSVTVK-------------------------------- 296 (794)
T ss_pred -----------------hcCCceEEEEeecCCCCeEEEeccCCcEEEE--------------------------------
Confidence 1134566777777777777777777766541
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEcC--CeEEEE------ECCCceEEEE----eeCCCCCeeEEEEecCCCCEEEEE
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSATG--GKISLF------NMMTFKVMTT----FMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~d--g~i~vw------d~~~~~~~~~----~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
.......+.+++.|+.+-+... -.+.+- ++..|+++.. +....--...++-+| +|++++++
T Consensus 297 ------lgreeP~vsMd~~gKIiwa~~~ei~~~~~ks~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsP-NGrfV~Vc 369 (794)
T KOG0276|consen 297 ------LGREEPAVSMDSNGKIIWAVHSEIQAVNLKSVGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSP-NGRFVVVC 369 (794)
T ss_pred ------ccCCCCceeecCCccEEEEcCceeeeeeceeccCcccccCCccccchhhhccccccchHHhccCC-CCcEEEEe
Confidence 1112223444555544433221 111111 2333433221 111111234578888 88887665
Q ss_pred eCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEE
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 944 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 944 (1101)
.||.-.||..-. --..+.+.-....|++|.+..++--.++.|+++ ..++..+..... .....
T Consensus 370 -gdGEyiIyTala-----~RnK~fG~~~eFvw~~dsne~avRes~~~vki~--knfke~ksi~~~----------~~~e~ 431 (794)
T KOG0276|consen 370 -GDGEYIIYTALA-----LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIF--KNFKEHKSIRPD----------MSAEG 431 (794)
T ss_pred -cCccEEEEEeee-----hhhcccccceeEEEcCCCCeEEEEecCCceEEE--ecceeccccccc----------cceee
Confidence 589888886322 112355667889999998888988889999998 554443333211 11223
Q ss_pred cCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 945 NADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 945 s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
--.|.+|.+.+++.+++||.+++..++.+... ...+.|+.+|.+++.++.|. .+|+.
T Consensus 432 i~gg~Llg~~ss~~~~fydW~~~~lVrrI~v~------~k~v~w~d~g~lVai~~d~S-fyil~ 488 (794)
T KOG0276|consen 432 IFGGPLLGVRSSDFLCFYDWESGELVRRIEVT------SKHVYWSDNGELVAIAGDDS-FYILK 488 (794)
T ss_pred ecCCceEEEEeCCeEEEEEcccceEEEEEeec------cceeEEecCCCEEEEEecCc-eeEEE
Confidence 33566777788999999999999999998654 46789999999988887554 44443
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-35 Score=317.36 Aligned_cols=501 Identities=15% Similarity=0.257 Sum_probs=351.7
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
.+..|..++|+|.... +.++-..|.|++||+.-+.++.. |.+|.++|..++|+|++.+++
T Consensus 8 kSsRvKglsFHP~rPw-ILtslHsG~IQlWDYRM~tli~r-------------------FdeHdGpVRgv~FH~~qplFV 67 (1202)
T KOG0292|consen 8 KSSRVKGLSFHPKRPW-ILTSLHSGVIQLWDYRMGTLIDR-------------------FDEHDGPVRGVDFHPTQPLFV 67 (1202)
T ss_pred ccccccceecCCCCCE-EEEeecCceeeeehhhhhhHHhh-------------------hhccCCccceeeecCCCCeEE
Confidence 3568999999999885 56778999999999998888763 889999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+|+.|-.|+||+.++.+++. ++.||-+.|+.+.|++.-. +++|+|+|.+|+||+ .+++++..+.||...|.|..
T Consensus 68 SGGDDykIkVWnYk~rrclf---tL~GHlDYVRt~~FHheyP--WIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAq 142 (1202)
T KOG0292|consen 68 SGGDDYKIKVWNYKTRRCLF---TLLGHLDYVRTVFFHHEYP--WILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQ 142 (1202)
T ss_pred ecCCccEEEEEecccceehh---hhccccceeEEeeccCCCc--eEEEccCCCeEEEEeccCCceEEEEecCceEEEeec
Confidence 99999999999999998877 7889999999999999988 899999999999999 99999999999999999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
|+|.. ..++++|.|.+||+||+........-.+ ++.=...+..+ ..-++-....-....+.
T Consensus 143 FhptE--DlIVSaSLDQTVRVWDisGLRkk~~~pg------~~e~~~~~~~~-----------~~dLfg~~DaVVK~VLE 203 (1202)
T KOG0292|consen 143 FHPTE--DLIVSASLDQTVRVWDISGLRKKNKAPG------SLEDQMRGQQG-----------NSDLFGQTDAVVKHVLE 203 (1202)
T ss_pred cCCcc--ceEEEecccceEEEEeecchhccCCCCC------Cchhhhhcccc-----------chhhcCCcCeeeeeeec
Confidence 99976 5899999999999999865433322111 00000011110 00111111222345678
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
||.. .|+-++|+|.-..+++|+.|+.|++|.+..-+.-..-...+|...|.++-|+|...++++.+.|++|++||+...
T Consensus 204 GHDR-GVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kR 282 (1202)
T KOG0292|consen 204 GHDR-GVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKR 282 (1202)
T ss_pred cccc-ccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEEecccc
Confidence 8877 789999999999999999999999999987766555556677889999999999999999999999999999766
Q ss_pred ccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEE
Q 001319 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVV 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 741 (1101)
..+++++. .....+
T Consensus 283 -t~v~tfrr-----------------------------------------------------------------endRFW 296 (1202)
T KOG0292|consen 283 -TSVQTFRR-----------------------------------------------------------------ENDRFW 296 (1202)
T ss_pred -cceeeeec-----------------------------------------------------------------cCCeEE
Confidence 33333321 345567
Q ss_pred EEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE
Q 001319 742 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 821 (1101)
Q Consensus 742 ~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 821 (1101)
.++.+|..+ +++++.|+.+.++.+++ +.++.++ + +..|..
T Consensus 297 ~laahP~lN-LfAAgHDsGm~VFkleR-----------------------------------Erpa~~v--~--~n~LfY 336 (1202)
T KOG0292|consen 297 ILAAHPELN-LFAAGHDSGMIVFKLER-----------------------------------ERPAYAV--N--GNGLFY 336 (1202)
T ss_pred EEEecCCcc-eeeeecCCceEEEEEcc-----------------------------------cCceEEE--c--CCEEEE
Confidence 788888888 45555555566666542 2333333 2 334444
Q ss_pred EcCCeEEEEECCCceEE--EEeeCC---CCCeeEEEEecCCCCEEEEEeCC-CcEEEEEeecceEEE-e-ecc-CCCCee
Q 001319 822 ATGGKISLFNMMTFKVM--TTFMSP---PPASTFLAFHPQDNNIIAIGTED-STIHIYNVRVDEVKS-K-LKG-HQKRIT 892 (1101)
Q Consensus 822 ~~dg~i~vwd~~~~~~~--~~~~~~---~~~i~~l~~s~~~~~~la~g~~d-g~v~iwd~~~~~~~~-~-~~~-h~~~V~ 892 (1101)
..+..|+-+|+.+.+-. ..++.. ..+..++.+.|..+..|++...| |.-.++.+....... . -.. ......
T Consensus 337 vkd~~i~~~d~~t~~d~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~~~~~k~tG~~ 416 (1202)
T KOG0292|consen 337 VKDRFIRSYDLRTQKDTAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDGKDVKKGTGEG 416 (1202)
T ss_pred EccceEEeeeccccccceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCchhhhcCCCCc
Confidence 45888999999875543 333332 35788999999555555554444 444555554321110 0 000 111223
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeE
Q 001319 893 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQ 972 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~ 972 (1101)
++-.. .+++.+---.+.++.+=++....... .... .....+-+-.+|.+| ..+...|.+||+...+.+..
T Consensus 417 a~fva-rNrfavl~k~~~~v~ik~l~N~vtkk-l~~~-------~~~~~IF~ag~g~ll-l~~~~~v~lfdvQq~~~~~s 486 (1202)
T KOG0292|consen 417 ALFVA-RNRFAVLDKSNEQVVIKNLKNKVTKK-LLLP-------ESTDDIFYAGTGNLL-LRSPDSVTLFDVQQKKKVGS 486 (1202)
T ss_pred eEEEE-ecceEEEEecCcceEEecccchhhhc-ccCc-------ccccceeeccCccEE-EEcCCeEEEEEeecceEEEE
Confidence 33333 22333333335566666665532211 1111 233445555555544 44567899999999988888
Q ss_pred eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 973 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 973 ~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
+. -..|..+.||+|..+++.-+ -.+|.|.+.+
T Consensus 487 i~-----~s~vkyvvws~dm~~vAll~-Kh~i~i~~kk 518 (1202)
T KOG0292|consen 487 IK-----VSKVKYVVWSNDMSRVALLS-KHTITIADKK 518 (1202)
T ss_pred Ee-----cCceeEEEEcCccchhhhcc-cceEEEEecc
Confidence 87 46799999999998877655 3456666643
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-37 Score=289.82 Aligned_cols=287 Identities=16% Similarity=0.220 Sum_probs=258.9
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
++++||.+.|.++.|++|+++|++++.||.+.|||.-+..... .+.-....|..+||+|.|+ +++.|+-|+...|
T Consensus 49 r~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~h---aipl~s~WVMtCA~sPSg~--~VAcGGLdN~Csi 123 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVH---AIPLPSSWVMTCAYSPSGN--FVACGGLDNKCSI 123 (343)
T ss_pred EEecccccceeeeEecCCcCeEEeeccCCeEEEEEccccccee---EEecCceeEEEEEECCCCC--eEEecCcCceeEE
Confidence 3589999999999999999999999999999999998876554 4556778999999999999 8999999999999
Q ss_pred EE-cCC------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc-CCC
Q 001319 480 WE-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1101)
Q Consensus 480 wd-~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~ 551 (1101)
|+ .+. +..+.+.+|++.+.++.|.. | ..|++++.|.+..+||++++.....+.+|.+.|.++.++| +++
T Consensus 124 y~ls~~d~~g~~~v~r~l~gHtgylScC~f~d--D-~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 124 YPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD--D-NHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EecccccccccceeeeeecCccceeEEEEEcC--C-CceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 99 322 34567899999999999975 3 4788999999999999999999999999999999999999 999
Q ss_pred EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
.+++|+. |...++||++.+.++++|.+|.. .|+.++|.|+|.-+++|++|++.++||++..+.+..+.......+
T Consensus 201 tFvSg~c----D~~aklWD~R~~~c~qtF~ghes-DINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~g 275 (343)
T KOG0286|consen 201 TFVSGGC----DKSAKLWDVRSGQCVQTFEGHES-DINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICG 275 (343)
T ss_pred eEEeccc----ccceeeeeccCcceeEeeccccc-ccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCC
Confidence 9999987 88999999999999999999998 899999999999999999999999999999999999987777789
Q ss_pred CCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCC
Q 001319 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1101)
Q Consensus 632 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 711 (1101)
|++++||..|++|++|..|.++.+||.-.+ +..-.+
T Consensus 276 itSv~FS~SGRlLfagy~d~~c~vWDtlk~-e~vg~L------------------------------------------- 311 (343)
T KOG0286|consen 276 ITSVAFSKSGRLLFAGYDDFTCNVWDTLKG-ERVGVL------------------------------------------- 311 (343)
T ss_pred ceeEEEcccccEEEeeecCCceeEeecccc-ceEEEe-------------------------------------------
Confidence 999999999999999999999999997655 111111
Q ss_pred CceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 712 SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|.+.|.++..+|||..+.+++-|..+++|.
T Consensus 312 ----------------------~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 312 ----------------------AGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred ----------------------eccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 35999999999999999999999999999993
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-33 Score=286.79 Aligned_cols=496 Identities=18% Similarity=0.249 Sum_probs=371.4
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCC--------eEEEEeecCCcccccceeeecccCcEEEEEEecCC--CceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKH--------LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN--KLLCVVT 470 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~--------~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~--~~~~l~s 470 (1101)
.+.||+..|.|++.+||.-.+|+|-.-| .|++||..+-..+. .+......|.|++|++-+ ..+..+-
T Consensus 99 ~y~GH~ddikc~~vHPdri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~---V~g~f~~GV~~vaFsk~~~G~~l~~vD 175 (626)
T KOG2106|consen 99 HYLGHNDDIKCMAVHPDRIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLH---VIGFFDRGVTCVAFSKINGGSLLCAVD 175 (626)
T ss_pred cccCCCCceEEEeecCCceeeccCcccccCCCcCCCeeeecccccceeee---eeccccccceeeeecccCCCceEEEec
Confidence 3789999999999999999999874444 49999977744343 555667789999999853 3223333
Q ss_pred ecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee---ccC-CCCceEEEE
Q 001319 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDA-PGHWCTTML 545 (1101)
Q Consensus 471 ~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~-~~~~v~~~~ 545 (1101)
-+.+..+-+|| ..+......+..+..|....|+|... +++++. ..+.+.+|+.+.+..... +.. ....|.|++
T Consensus 176 ~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~-nliit~-Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~ 253 (626)
T KOG2106|consen 176 DSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDP-NLIITC-GKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVT 253 (626)
T ss_pred CCCccccchhhchhhhccCcceeccceEEEEEeccCCC-cEEEEe-CCceEEEEEccCCceEEEeeccccccceEEEEEE
Confidence 55667889999 88887777777788899999999754 455554 478999999887765432 222 235799999
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
|.++|..+-. |.+|.|.||+..+.+..+....|.+ .|.+++.-.+|. |++|+.|+.|..|| ...+.+...+.
T Consensus 254 F~engdviTg-----DS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~lr~Gt-llSGgKDRki~~Wd-~~y~k~r~~el 325 (626)
T KOG2106|consen 254 FLENGDVITG-----DSGGNILIWSKGTNRISKQVHAHDG-GVFSLCMLRDGT-LLSGGKDRKIILWD-DNYRKLRETEL 325 (626)
T ss_pred EcCCCCEEee-----cCCceEEEEeCCCceEEeEeeecCC-ceEEEEEecCcc-EeecCccceEEecc-ccccccccccC
Confidence 9999986643 2489999999999888888777766 899999988875 55699999999999 56666666776
Q ss_pred CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceec
Q 001319 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1101)
Q Consensus 626 ~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 705 (1101)
+...+.|..++-...+ |++|...+.|..=.++++.....
T Consensus 326 Pe~~G~iRtv~e~~~d--i~vGTtrN~iL~Gt~~~~f~~~v--------------------------------------- 364 (626)
T KOG2106|consen 326 PEQFGPIRTVAEGKGD--ILVGTTRNFILQGTLENGFTLTV--------------------------------------- 364 (626)
T ss_pred chhcCCeeEEecCCCc--EEEeeccceEEEeeecCCceEEE---------------------------------------
Confidence 6666677777644322 77777666665444433311000
Q ss_pred cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccc
Q 001319 706 SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 785 (1101)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~ 785 (1101)
.+|......++.+|+...+++++.|+.+++|+-.. ..
T Consensus 365 ----------------------------~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k---------------~~ 401 (626)
T KOG2106|consen 365 ----------------------------QGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHK---------------LE 401 (626)
T ss_pred ----------------------------EecccceeeEEcCCChhheeeccCcceEEEccCCc---------------ee
Confidence 33777888999999999999999999999997110 11
Q ss_pred cccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEE
Q 001319 786 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
|.. ...+++.|+.|.|.| .+|.|. .|...|.|.++...+..-.. ..+++++.|+| +|.+||+|
T Consensus 402 wt~-------------~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~~~~d-~~~ls~v~ysp-~G~~lAvg 465 (626)
T KOG2106|consen 402 WTK-------------IIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVTIHTD-NEQLSVVRYSP-DGAFLAVG 465 (626)
T ss_pred EEE-------------EecCceeEeeccCcc-eEEEeeccceEEEEecccceeEEEEec-CCceEEEEEcC-CCCEEEEe
Confidence 211 156788999999999 888888 89999999999655554444 88999999999 99999999
Q ss_pred eCCCcEEEEEeecce-EEEee-ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccc------------eEEee
Q 001319 865 TEDSTIHIYNVRVDE-VKSKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS------------VTIHI 930 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~-~~~~~-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~------------~~~~~ 930 (1101)
+.|+.|+||.+..+. ...+. +.|..+|+.+.||+|+++|.+-+.|-.|..|.-..-+.... .-+..
T Consensus 466 s~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v 545 (626)
T KOG2106|consen 466 SHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEV 545 (626)
T ss_pred cCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEE
Confidence 999999999998543 22222 23448999999999999999999999999994332221111 11222
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 931 PAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 931 ~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
..+.....+..++-+...+.+++++ .|+|++|...--+....+....+|++.|++++|+.+..++++.+.|.+|..|++
T Consensus 546 ~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~he~~ghs~~vt~V~Fl~~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 546 FGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPSHEYGGHSSHVTNVAFLCKDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred ecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccceeeccccceeEEEEEeeCCceEEecCCCceEEEEEe
Confidence 2233335677777788889999987 689999987755554444444567999999999999999998889999999986
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-36 Score=295.73 Aligned_cols=287 Identities=20% Similarity=0.333 Sum_probs=263.1
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
..+.+|...|+.+-|+|+-. ++++++.|++|++||..+|+.+. .++||++.|..++|+..
T Consensus 102 ~~l~g~r~~vt~v~~hp~~~-~v~~as~d~tikv~D~~tg~~e~-------------------~LrGHt~sv~di~~~a~ 161 (406)
T KOG0295|consen 102 QKLAGHRSSVTRVIFHPSEA-LVVSASEDATIKVFDTETGELER-------------------SLRGHTDSVFDISFDAS 161 (406)
T ss_pred hhhhccccceeeeeeccCce-EEEEecCCceEEEEEccchhhhh-------------------hhhccccceeEEEEecC
Confidence 34556999999999999976 78999999999999999999865 39999999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~ 496 (1101)
|++||+++.|-.+++||.++- .+....+.+|...|.+++|-|-|. +++|++.|.+|+.|+ .+|.++.++.+|...
T Consensus 162 Gk~l~tcSsDl~~~LWd~~~~--~~c~ks~~gh~h~vS~V~f~P~gd--~ilS~srD~tik~We~~tg~cv~t~~~h~ew 237 (406)
T KOG0295|consen 162 GKYLATCSSDLSAKLWDFDTF--FRCIKSLIGHEHGVSSVFFLPLGD--HILSCSRDNTIKAWECDTGYCVKTFPGHSEW 237 (406)
T ss_pred ccEEEecCCccchhheeHHHH--HHHHHHhcCcccceeeEEEEecCC--eeeecccccceeEEecccceeEEeccCchHh
Confidence 999999999999999999873 333336789999999999999998 899999999999999 999999999999999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC---------------CCEEEEeecCCC
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD---------------GSRLFSCGTSKD 561 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d---------------~~~l~~~~~~~~ 561 (1101)
|..+..+. ||.++++++.|.++++|-+.+..+...+..|.++|.+++|.|. +.++.+++.
T Consensus 238 vr~v~v~~--DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~Sr--- 312 (406)
T KOG0295|consen 238 VRMVRVNQ--DGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSR--- 312 (406)
T ss_pred EEEEEecC--CeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecc---
Confidence 99998755 8899999999999999999999999999999999999999774 246677664
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
|++|++||+.++.++.++.+|.+ .|..++|+|.|+||+++.+|+++++||+.++++...+..+.+ -|+++.|+.+.
T Consensus 313 -DktIk~wdv~tg~cL~tL~ghdn-wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h--fvt~lDfh~~~ 388 (406)
T KOG0295|consen 313 -DKTIKIWDVSTGMCLFTLVGHDN-WVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH--FVTSLDFHKTA 388 (406)
T ss_pred -cceEEEEeccCCeEEEEEecccc-eeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcc--eeEEEecCCCC
Confidence 99999999999999999999988 899999999999999999999999999999999999998877 68999999999
Q ss_pred CEEEEEEcCCcEEEEE
Q 001319 642 NLLAVTTADNGFKILA 657 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd 657 (1101)
.++++|+-|.++++|.
T Consensus 389 p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 389 PYVVTGSVDQTVKVWE 404 (406)
T ss_pred ceEEeccccceeeeee
Confidence 9999999999999996
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-35 Score=279.08 Aligned_cols=292 Identities=17% Similarity=0.284 Sum_probs=244.3
Q ss_pred eEEEecccCCcceEEEEEeCC-CCEEEEEeCCCcEEEEECCC-----CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 576 IKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
...++++|.+ .|..++..+. ...+++++.|.++.+|++.. |..++.+.+|.| .|..++.++||++.++++.
T Consensus 7 l~~tl~gh~d-~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH--~v~dv~~s~dg~~alS~sw 83 (315)
T KOG0279|consen 7 LRGTLEGHTD-WVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH--FVSDVVLSSDGNFALSASW 83 (315)
T ss_pred eeeeecCCCc-eEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccce--EecceEEccCCceEEeccc
Confidence 4456788887 7888888886 46777899999999998764 667788888777 7999999999999999999
Q ss_pred CCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEE
Q 001319 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVT 729 (1101)
Q Consensus 650 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 729 (1101)
|+++++||+.++ +..+.+.
T Consensus 84 D~~lrlWDl~~g-~~t~~f~------------------------------------------------------------ 102 (315)
T KOG0279|consen 84 DGTLRLWDLATG-ESTRRFV------------------------------------------------------------ 102 (315)
T ss_pred cceEEEEEecCC-cEEEEEE------------------------------------------------------------
Confidence 999999999876 2211111
Q ss_pred cCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE
Q 001319 730 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 809 (1101)
Q Consensus 730 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 809 (1101)
+|...|.+
T Consensus 103 ------------------------------------------------------------------------GH~~dVls 110 (315)
T KOG0279|consen 103 ------------------------------------------------------------------------GHTKDVLS 110 (315)
T ss_pred ------------------------------------------------------------------------ecCCceEE
Confidence 27888999
Q ss_pred EEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCC--CCCeeEEEEecCC-CCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 810 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQD-NNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 810 ~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~-~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
++|++|.+.+++|+ |.+|++|++... +..++..+ .+.|+|+.|+|.. ..+|++++.|++|++||+.+.+....+.
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~ 189 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFI 189 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccc
Confidence 99999999999998 889999998654 44444433 6789999999932 7899999999999999999999999999
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
||++.++.+++||||..+++|+.||.+.+||+..++....+... ..|.+++|+|..-.|+.+.+..|+|||++
T Consensus 190 gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~-------~~v~sl~fspnrywL~~at~~sIkIwdl~ 262 (315)
T KOG0279|consen 190 GHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAF-------DIVNSLCFSPNRYWLCAATATSIKIWDLE 262 (315)
T ss_pred cccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCC-------CeEeeEEecCCceeEeeccCCceEEEecc
Confidence 99999999999999999999999999999999998764333221 78999999999999999998999999999
Q ss_pred CceeeeEeccCCC------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 966 KMERIRQWTPQDA------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 966 ~~~~~~~~~~~~~------h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
++..+..+..... ......+++||+||+.|++|..|+.|++|.+..
T Consensus 263 ~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 263 SKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred chhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEeec
Confidence 9998877765321 133467889999999999999999999998753
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-35 Score=272.04 Aligned_cols=281 Identities=16% Similarity=0.255 Sum_probs=236.6
Q ss_pred eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecC
Q 001319 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~ 437 (1101)
-+||+++.|.+||+|...+|.+... +......|..+...||+++||+++.. .|++||+.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rT-------------------iqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S 70 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRT-------------------IQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNS 70 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEE-------------------EecCccceeeEEEcCCcchhhhccCC-eeEEEEccC
Confidence 4789999999999999999998763 55567899999999999999999765 599999999
Q ss_pred CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEecc
Q 001319 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI 516 (1101)
Q Consensus 438 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~ 516 (1101)
++.- +..++.+|...|+++.|..||+ ++++||+||+++||| ..-.+.+. ..|..+|+++..+|. ..-|+++..
T Consensus 71 ~np~-Pv~t~e~h~kNVtaVgF~~dgr--WMyTgseDgt~kIWdlR~~~~qR~-~~~~spVn~vvlhpn--QteLis~dq 144 (311)
T KOG0315|consen 71 NNPN-PVATFEGHTKNVTAVGFQCDGR--WMYTGSEDGTVKIWDLRSLSCQRN-YQHNSPVNTVVLHPN--QTELISGDQ 144 (311)
T ss_pred CCCC-ceeEEeccCCceEEEEEeecCe--EEEecCCCceEEEEeccCcccchh-ccCCCCcceEEecCC--cceEEeecC
Confidence 8764 5558999999999999999999 899999999999999 55444444 447899999999884 468999999
Q ss_pred CCeEEEEecCCCCeeeeccCC-CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC------eeEEEecccCCcceE
Q 001319 517 DGKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG------TIKRTYAGFRKKSNG 589 (1101)
Q Consensus 517 d~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~------~~~~~~~~~~~~~v~ 589 (1101)
+|.|++||+....+...+... ...|.++...|||.+++.+.. .|..++|++-++ +++.+++.|.. -+.
T Consensus 145 sg~irvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nn----kG~cyvW~l~~~~~~s~l~P~~k~~ah~~-~il 219 (311)
T KOG0315|consen 145 SGNIRVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANN----KGNCYVWRLLNHQTASELEPVHKFQAHNG-HIL 219 (311)
T ss_pred CCcEEEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecC----CccEEEEEccCCCccccceEhhheecccc-eEE
Confidence 999999999988666554433 458999999999999998864 889999998754 35566777777 677
Q ss_pred EEEEeCCCCEEEEEeCCCcEEEEECCCC-eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccc
Q 001319 590 VVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 590 ~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~ 668 (1101)
.+.++|++++|++++.|.+++||+.++. +....+. ++...+..++||.||++|++|+.|+.+++|++..+ +.++..
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~--gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~-k~v~qy 296 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLT--GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAG-KEVRQY 296 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCceeeEEEee--cCCceEEeeeeccCccEEEecCCCCceeecccccC-ceeeec
Confidence 7889999999999999999999999987 3334444 45568999999999999999999999999999988 555555
Q ss_pred cCCC
Q 001319 669 ENPP 672 (1101)
Q Consensus 669 ~~~~ 672 (1101)
.++.
T Consensus 297 ~gh~ 300 (311)
T KOG0315|consen 297 QGHH 300 (311)
T ss_pred CCcc
Confidence 5543
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=267.87 Aligned_cols=295 Identities=15% Similarity=0.225 Sum_probs=252.3
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe--eEEEecccCCc
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKK 586 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~ 586 (1101)
-+|++++.|.+||+|...++.+..++......|..+.+.||++.|++++ ...|++||+.++. ++.+|.+|.+
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-----~qhvRlyD~~S~np~Pv~t~e~h~k- 84 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-----NQHVRLYDLNSNNPNPVATFEGHTK- 84 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-----CCeeEEEEccCCCCCceeEEeccCC-
Confidence 5899999999999999999999999999999999999999999999986 6789999998865 6899999987
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccc
Q 001319 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 666 (1101)
.|..+.|..+|+++++|++||+++|||++.......+.. ..+|+++..+|+...|++|..+|.|++||+... .+..
T Consensus 85 NVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~dqsg~irvWDl~~~-~c~~ 160 (311)
T KOG0315|consen 85 NVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN-SCTH 160 (311)
T ss_pred ceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeecCCCcEEEEEccCC-cccc
Confidence 799999999999999999999999999999666555554 358999999999999999999999999999765 1111
Q ss_pred cccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEee
Q 001319 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 746 (1101)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 746 (1101)
.+- |+ ....|.++...
T Consensus 161 ~li-------------------------------------------------------------Pe---~~~~i~sl~v~ 176 (311)
T KOG0315|consen 161 ELI-------------------------------------------------------------PE---DDTSIQSLTVM 176 (311)
T ss_pred ccC-------------------------------------------------------------CC---CCcceeeEEEc
Confidence 111 11 34578899999
Q ss_pred cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC
Q 001319 747 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG 825 (1101)
Q Consensus 747 ~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg 825 (1101)
|||..++++...|...+|++...... +.......+. .|.+.+..+.+|||+++||+++ |.
T Consensus 177 ~dgsml~a~nnkG~cyvW~l~~~~~~-----------------s~l~P~~k~~--ah~~~il~C~lSPd~k~lat~ssdk 237 (311)
T KOG0315|consen 177 PDGSMLAAANNKGNCYVWRLLNHQTA-----------------SELEPVHKFQ--AHNGHILRCLLSPDVKYLATCSSDK 237 (311)
T ss_pred CCCcEEEEecCCccEEEEEccCCCcc-----------------ccceEhhhee--cccceEEEEEECCCCcEEEeecCCc
Confidence 99999999999999999997652211 1111111122 3899999999999999999998 89
Q ss_pred eEEEEECCCc-eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 826 KISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 826 ~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
+++||+.++. +....+.+|...+...+||. |+.+|++|+.|+.+++|++..++.++...+|-....|++..
T Consensus 238 tv~iwn~~~~~kle~~l~gh~rWvWdc~FS~-dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 238 TVKIWNTDDFFKLELVLTGHQRWVWDCAFSA-DGEYLVTASSDHTARLWDLSAGKEVRQYQGHHKAAVCVALN 309 (311)
T ss_pred eEEEEecCCceeeEEEeecCCceEEeeeecc-CccEEEecCCCCceeecccccCceeeecCCcccccEEEEee
Confidence 9999999988 77778889999999999999 99999999999999999999999999999999988888764
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-34 Score=281.18 Aligned_cols=338 Identities=17% Similarity=0.257 Sum_probs=288.0
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.+..|++.|.+++.+|+.+ +++||+.|....+|+ .+|..+..+.+|...|+++.|+. +|.+|++|+.+|.|++|+
T Consensus 59 tF~~H~~svFavsl~P~~~--l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fsh--dgtlLATGdmsG~v~v~~ 134 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNN--LVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSH--DGTLLATGDMSGKVLVFK 134 (399)
T ss_pred ehhhcCCceEEEEeCCCCc--eEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEcc--CceEEEecCCCccEEEEE
Confidence 5789999999999999777 899999999999999 89999999999999999999987 779999999999999999
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
..++.....+......+.-+.|+|.+..|+.|+. ||.+++|.+.++...+.+.||.. ++++-.|.|+|++++++.
T Consensus 135 ~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~----DGsvWmw~ip~~~~~kv~~Gh~~-~ct~G~f~pdGKr~~tgy 209 (399)
T KOG0296|consen 135 VSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGST----DGSVWMWQIPSQALCKVMSGHNS-PCTCGEFIPDGKRILTGY 209 (399)
T ss_pred cccCceEEEeecccCceEEEEecccccEEEeecC----CCcEEEEECCCcceeeEecCCCC-CcccccccCCCceEEEEe
Confidence 9999999999878888999999999999999986 99999999999999999999877 888899999999999999
Q ss_pred CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeee
Q 001319 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1101)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1101)
.||+|++|+..++.++..+....+ ....++.++..+..++.|+.++.+.+-+..++. .+....+
T Consensus 210 ~dgti~~Wn~ktg~p~~~~~~~e~-~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgK-Vv~~~n~-------------- 273 (399)
T KOG0296|consen 210 DDGTIIVWNPKTGQPLHKITQAEG-LELPCISLNLAGSTLTKGNSEGVACGVNNGSGK-VVNCNNG-------------- 273 (399)
T ss_pred cCceEEEEecCCCceeEEeccccc-CcCCccccccccceeEeccCCccEEEEccccce-EEEecCC--------------
Confidence 999999999999999988875543 356899999999999999999998887665551 1100000
Q ss_pred eeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 685 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
.+..+.....
T Consensus 274 ---------------------------------------------------------------~~~~l~~~~e------- 283 (399)
T KOG0296|consen 274 ---------------------------------------------------------------TVPELKPSQE------- 283 (399)
T ss_pred ---------------------------------------------------------------CCccccccch-------
Confidence 0000000000
Q ss_pred EecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC
Q 001319 765 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 843 (1101)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~ 843 (1101)
.....|..+.++..-.+.|+|+ ||+|.|||+...+....+.
T Consensus 284 -------------------------------------~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~- 325 (399)
T KOG0296|consen 284 -------------------------------------ELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICE- 325 (399)
T ss_pred -------------------------------------hhhhhhhhcccccccchhhcccccceEEEEecccchhheecc-
Confidence 0233345556666777889998 9999999998877766655
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001319 844 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 844 ~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
|...|+.+.|-+ ..+|++++.||.|+.||.++|+++..+.||...|.+++++|++++++|+|.|++.+|+++.
T Consensus 326 he~~V~~l~w~~--t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 326 HEDGVTKLKWLN--TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred CCCceEEEEEcC--cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 778899999986 5788899999999999999999999999999999999999999999999999999999874
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-34 Score=292.13 Aligned_cols=336 Identities=16% Similarity=0.302 Sum_probs=270.6
Q ss_pred cccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecC--Ccc-----cccceeeecc----cCcEEEEEEecCCCceEEE
Q 001319 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAG--SND-----LRQHSQIDAH----VGAVNDLAFAYPNKLLCVV 469 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~--~~~-----~~~~~~l~~h----~~~V~~l~~s~d~~~~~l~ 469 (1101)
+. |+.+|.+.+|+|-.. .+|+|+.|-+.++|++.. ..+ ++....+.++ ...|++++|+.+|. .||
T Consensus 175 l~-~~~~V~~~~WnP~~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~--~La 251 (524)
T KOG0273|consen 175 LR-HESEVFICAWNPLRDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGT--LLA 251 (524)
T ss_pred cc-CCCceEEEecCchhhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCC--eEE
Confidence 44 999999999999665 999999999999999974 111 1111111122 34799999999999 899
Q ss_pred EecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC
Q 001319 470 TCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 470 s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d 549 (1101)
+|+.||.+++|+.+|..+.++..|.++|.++.|+. .|.+|++++.|+++.+||..+++....+..+..+-..+.|-.+
T Consensus 252 tG~~~G~~riw~~~G~l~~tl~~HkgPI~slKWnk--~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~ 329 (524)
T KOG0273|consen 252 TGSEDGEARIWNKDGNLISTLGQHKGPIFSLKWNK--KGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSN 329 (524)
T ss_pred EeecCcEEEEEecCchhhhhhhccCCceEEEEEcC--CCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecC
Confidence 99999999999999999999999999999999976 6689999999999999999888888888877776566777555
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
. .+++++. ++.|+++.+....++.++.+|++ .|.++.|+|.|..|++++.|++++||++........+..|..
T Consensus 330 ~-~F~ts~t----d~~i~V~kv~~~~P~~t~~GH~g-~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hsk- 402 (524)
T KOG0273|consen 330 D-EFATSST----DGCIHVCKVGEDRPVKTFIGHHG-EVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSK- 402 (524)
T ss_pred c-eEeecCC----CceEEEEEecCCCcceeeecccC-ceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhcc-
Confidence 4 4555554 89999999999999999999887 899999999999999999999999999998888888877654
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
.|..+.|+|+|... |+..
T Consensus 403 -ei~t~~wsp~g~v~-----------~n~~-------------------------------------------------- 420 (524)
T KOG0273|consen 403 -EIYTIKWSPTGPVT-----------SNPN-------------------------------------------------- 420 (524)
T ss_pred -ceeeEeecCCCCcc-----------CCCc--------------------------------------------------
Confidence 78999999976310 0000
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccC
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 789 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1101)
.+..+++++.|++|++||+.
T Consensus 421 --------------------------------------~~~~l~sas~dstV~lwdv~---------------------- 440 (524)
T KOG0273|consen 421 --------------------------------------MNLMLASASFDSTVKLWDVE---------------------- 440 (524)
T ss_pred --------------------------------------CCceEEEeecCCeEEEEEcc----------------------
Confidence 01124444455555555432
Q ss_pred CccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 790 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 790 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
.|.++.... .|..+|.+++|||+|+++|+|+ ||.|.+|++++++..+.+.+ .+.|..++|+. +|.+|..+-.||
T Consensus 441 ~gv~i~~f~---kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~-~~~Ifel~Wn~-~G~kl~~~~sd~ 515 (524)
T KOG0273|consen 441 SGVPIHTLM---KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG-TGGIFELCWNA-AGDKLGACASDG 515 (524)
T ss_pred CCceeEeec---cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC-CCeEEEEEEcC-CCCEEEEEecCC
Confidence 122221111 2999999999999999999999 99999999999999999986 56699999999 889998999999
Q ss_pred cEEEEEee
Q 001319 869 TIHIYNVR 876 (1101)
Q Consensus 869 ~v~iwd~~ 876 (1101)
.+++.|+.
T Consensus 516 ~vcvldlr 523 (524)
T KOG0273|consen 516 SVCVLDLR 523 (524)
T ss_pred CceEEEec
Confidence 99999874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=278.75 Aligned_cols=329 Identities=15% Similarity=0.205 Sum_probs=282.1
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.|..|++.|.+++.+|+.+++|+|+.|....+|+..+|+... .+.+|.+.|+++.|+.||. +||||+.+|.|+||
T Consensus 59 tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~---eltgHKDSVt~~~Fshdgt--lLATGdmsG~v~v~ 133 (399)
T KOG0296|consen 59 TFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAG---ELTGHKDSVTCCSFSHDGT--LLATGDMSGKVLVF 133 (399)
T ss_pred ehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCccee---EecCCCCceEEEEEccCce--EEEecCCCccEEEE
Confidence 478899999999999999999999999999999999998555 7889999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
+ .++.....+.+.-..+.-+.|+|. +.+|+.|+.||.+.+|.+.+......+.+|..++++-.|.|||++++++..
T Consensus 134 ~~stg~~~~~~~~e~~dieWl~WHp~--a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~- 210 (399)
T KOG0296|consen 134 KVSTGGEQWKLDQEVEDIEWLKWHPR--AHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYD- 210 (399)
T ss_pred EcccCceEEEeecccCceEEEEeccc--ccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEec-
Confidence 9 888888888767778889999994 479999999999999999998888889999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc--------C-CCCC
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--------E-GGLP 630 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--------~-~~~~ 630 (1101)
+++|++||+.++.++.++.+..+....++.++..+..++.|..++.+++-+..+|+.+..... + ....
T Consensus 211 ---dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~e 287 (399)
T KOG0296|consen 211 ---DGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDE 287 (399)
T ss_pred ---CceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhh
Confidence 999999999999999999877666788899999999999999999999999999988877653 1 1112
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
.|..+.++..-.+.|+|+-||+|.|||+.... ++.
T Consensus 288 sve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~--~R~------------------------------------------- 322 (399)
T KOG0296|consen 288 SVESIPSSSKLPLAACGSVDGTIAIYDLAAST--LRH------------------------------------------- 322 (399)
T ss_pred hhhhcccccccchhhcccccceEEEEecccch--hhe-------------------------------------------
Confidence 33444455556677778888888888765330 000
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCC
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 790 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1101)
T Consensus 323 -------------------------------------------------------------------------------- 322 (399)
T KOG0296|consen 323 -------------------------------------------------------------------------------- 322 (399)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCc
Q 001319 791 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST 869 (1101)
Q Consensus 791 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~ 869 (1101)
.. .|...|..+.|-+ ..+|+++. +|+|+.||.++|+++.++.+|...|.+++++| +++++++++.|++
T Consensus 323 -------~c--~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~-~~~~vvT~s~D~~ 391 (399)
T KOG0296|consen 323 -------IC--EHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSP-QKRLVVTVSDDNT 391 (399)
T ss_pred -------ec--cCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcC-CCcEEEEecCCCe
Confidence 00 1777788888888 45565555 99999999999999999999999999999999 9999999999999
Q ss_pred EEEEEee
Q 001319 870 IHIYNVR 876 (1101)
Q Consensus 870 v~iwd~~ 876 (1101)
.+||+..
T Consensus 392 a~VF~v~ 398 (399)
T KOG0296|consen 392 ALVFEVP 398 (399)
T ss_pred EEEEecC
Confidence 9999864
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-34 Score=281.99 Aligned_cols=293 Identities=18% Similarity=0.285 Sum_probs=260.5
Q ss_pred CcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 334 PRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 334 ~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
|-++.+.+. |.+.|.|+++.|-+. ++++|+.|++|.|||+.+|++.. ++.||-..|..+
T Consensus 140 pwKl~rVi~gHlgWVr~vavdP~n~-wf~tgs~DrtikIwDlatg~Lkl-------------------tltGhi~~vr~v 199 (460)
T KOG0285|consen 140 PWKLYRVISGHLGWVRSVAVDPGNE-WFATGSADRTIKIWDLATGQLKL-------------------TLTGHIETVRGV 199 (460)
T ss_pred cceehhhhhhccceEEEEeeCCCce-eEEecCCCceeEEEEcccCeEEE-------------------eecchhheeeee
Confidence 334445554 999999999999876 67999999999999999998765 489999999999
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~ 491 (1101)
++|+-..||++++.|+.|+.||++..+.++ .+.||-..|.|++..|.-. .|++|+.|.+++||| .+...+..+.
T Consensus 200 avS~rHpYlFs~gedk~VKCwDLe~nkvIR---~YhGHlS~V~~L~lhPTld--vl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 200 AVSKRHPYLFSAGEDKQVKCWDLEYNKVIR---HYHGHLSGVYCLDLHPTLD--VLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred eecccCceEEEecCCCeeEEEechhhhhHH---HhccccceeEEEeccccce--eEEecCCcceEEEeeecccceEEEec
Confidence 999999999999999999999999998888 6789999999999999988 899999999999999 8888999999
Q ss_pred cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
||..+|..+.+.+.. ..+++|+.|++|++||+..++....+..|...+++++..|....+++++ ...|+-|++
T Consensus 275 GH~~~V~~V~~~~~d--pqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas-----~dnik~w~~ 347 (460)
T KOG0285|consen 275 GHTNPVASVMCQPTD--PQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASAS-----PDNIKQWKL 347 (460)
T ss_pred CCCCcceeEEeecCC--CceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccC-----CccceeccC
Confidence 999999999987653 4789999999999999999999999999999999999999999999987 446999999
Q ss_pred CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec---cCC---CCCCCCeeEEecCCCEEE
Q 001319 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD---AEG---GLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~---~~~---~~~~v~~v~~s~~g~~l~ 645 (1101)
..|..+..+.+|.. .+.+++.+.|+ ++++|+++|.+.+||.++|...+... ..+ ....|.+.+|...|..|+
T Consensus 348 p~g~f~~nlsgh~~-iintl~~nsD~-v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rli 425 (460)
T KOG0285|consen 348 PEGEFLQNLSGHNA-IINTLSVNSDG-VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLI 425 (460)
T ss_pred Cccchhhccccccc-eeeeeeeccCc-eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecccCceEE
Confidence 99999999999887 88889998875 88999999999999999987655442 111 223578899999999999
Q ss_pred EEEcCCcEEEEEccc
Q 001319 646 VTTADNGFKILANAI 660 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~ 660 (1101)
+|..|.+|++|.-..
T Consensus 426 t~eadKtIk~~keDe 440 (460)
T KOG0285|consen 426 TGEADKTIKMYKEDE 440 (460)
T ss_pred eccCCcceEEEeccc
Confidence 999999999997543
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-33 Score=263.61 Aligned_cols=287 Identities=19% Similarity=0.325 Sum_probs=234.6
Q ss_pred eecCCCcEEEEEEecC-CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 340 SLHQGSTVISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspd-g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
+-+|++.|+.+||+|- |. +||+|+.|+.|+||+...+..... ...+-.+|+..|.++||+|.|
T Consensus 10 ~~gh~~r~W~~awhp~~g~-ilAscg~Dk~vriw~~~~~~s~~c---------------k~vld~~hkrsVRsvAwsp~g 73 (312)
T KOG0645|consen 10 LSGHKDRVWSVAWHPGKGV-ILASCGTDKAVRIWSTSSGDSWTC---------------KTVLDDGHKRSVRSVAWSPHG 73 (312)
T ss_pred ecCCCCcEEEEEeccCCce-EEEeecCCceEEEEecCCCCcEEE---------------EEeccccchheeeeeeecCCC
Confidence 3459999999999999 76 889999999999999875332211 112245799999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC---ceeEEeecCC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHE 494 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~---~~~~~~~~h~ 494 (1101)
++||+|+.|.++.||.-..++ ......+.||...|.+++|+++|. +||+|++|++|-||. ..+ .++..+.+|.
T Consensus 74 ~~La~aSFD~t~~Iw~k~~~e-fecv~~lEGHEnEVK~Vaws~sG~--~LATCSRDKSVWiWe~deddEfec~aVL~~Ht 150 (312)
T KOG0645|consen 74 RYLASASFDATVVIWKKEDGE-FECVATLEGHENEVKCVAWSASGN--YLATCSRDKSVWIWEIDEDDEFECIAVLQEHT 150 (312)
T ss_pred cEEEEeeccceEEEeecCCCc-eeEEeeeeccccceeEEEEcCCCC--EEEEeeCCCeEEEEEecCCCcEEEEeeecccc
Confidence 999999999999999987654 334558999999999999999999 899999999999999 433 4678899999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCC---CCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..|..+.|+|.. .+|++++.|.+|++|+-.. -.+..++.++...|.+++|.+.|..|++++. |++++||-.
T Consensus 151 qDVK~V~WHPt~--dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sd----D~tv~Iw~~ 224 (312)
T KOG0645|consen 151 QDVKHVIWHPTE--DLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSD----DGTVSIWRL 224 (312)
T ss_pred ccccEEEEcCCc--ceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecC----CcceEeeee
Confidence 999999999976 5999999999999997663 2457788888889999999999999999985 999999975
Q ss_pred CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe------eeEeeccCCCCCCCCeeEEecC-CCEE
Q 001319 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN------ILTSTDAEGGLPNLPRLRFSKE-GNLL 644 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~------~~~~~~~~~~~~~v~~v~~s~~-g~~l 644 (1101)
. ..+.+.+...+..++|. ...|++++.|+.|++|.-...- .+.. ....|...|++++|+|. .++|
T Consensus 225 ~-----~~~~~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~-~~~aHe~dVNsV~w~p~~~~~L 296 (312)
T KOG0645|consen 225 Y-----TDLSGMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDEPSWNLLAK-KEGAHEVDVNSVQWNPKVSNRL 296 (312)
T ss_pred c-----cCcchhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCCchHHHHHh-hhcccccccceEEEcCCCCCce
Confidence 4 23444444478888898 4589999999999999765421 1111 12233448999999994 7899
Q ss_pred EEEEcCCcEEEEEcc
Q 001319 645 AVTTADNGFKILANA 659 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~ 659 (1101)
+++++||.+++|.+.
T Consensus 297 ~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 297 ASGGDDGIVNFWELE 311 (312)
T ss_pred eecCCCceEEEEEec
Confidence 999999999999864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-31 Score=269.36 Aligned_cols=524 Identities=13% Similarity=0.174 Sum_probs=378.1
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--------eEEEEE-
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--------LIKVWE- 481 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--------~v~iwd- 481 (1101)
.+-+-|.|..+.... +.+.+++++..... -+.+|...|.|++.+||-- .+++|-.-| .|++||
T Consensus 70 Nly~lptgE~vyfvA--~V~Vl~n~ee~~Qr----~y~GH~ddikc~~vHPdri--~vatGQ~ag~~g~~~~phvriWds 141 (626)
T KOG2106|consen 70 NLYLLPTGELVYFVA--AVGVLYNWEERSQR----HYLGHNDDIKCMAVHPDRI--RVATGQGAGTSGRPLQPHVRIWDS 141 (626)
T ss_pred eeEEccCccEEEEec--cEEEEEeehhhhcc----cccCCCCceEEEeecCCce--eeccCcccccCCCcCCCeeeeccc
Confidence 455667777665432 34667777552211 3669999999999999876 566655444 599999
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEec--cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC-EEEEeec
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGT 558 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~ 558 (1101)
.+-..++.+......|.+++|++...|.++.... .+..+.+||...+.........+..|....|.|.+. .+++++
T Consensus 142 v~L~TL~V~g~f~~GV~~vaFsk~~~G~~l~~vD~s~~h~lSVWdWqk~~~~~~vk~sne~v~~a~FHPtd~nliit~G- 220 (626)
T KOG2106|consen 142 VTLSTLHVIGFFDRGVTCVAFSKINGGSLLCAVDDSNPHMLSVWDWQKKAKLGPVKTSNEVVFLATFHPTDPNLIITCG- 220 (626)
T ss_pred ccceeeeeeccccccceeeeecccCCCceEEEecCCCccccchhhchhhhccCcceeccceEEEEEeccCCCcEEEEeC-
Confidence 8888888888777889999999988777776653 456789999988877777777777889999999665 455554
Q ss_pred CCCCCceEEEEeCCCCeeEE---EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 559 SKDGDSFLVEWNESEGTIKR---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
.+.+.+|+.+.+.+.+ .|..+....+.+++|.++| -+++|..+|.|.||+..+.+..+....| ...|.++
T Consensus 221 ----k~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~eng-dviTgDS~G~i~Iw~~~~~~~~k~~~aH--~ggv~~L 293 (626)
T KOG2106|consen 221 ----KGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENG-DVITGDSGGNILIWSKGTNRISKQVHAH--DGGVFSL 293 (626)
T ss_pred ----CceEEEEEccCCceEEEeeccccccceEEEEEEEcCCC-CEEeecCCceEEEEeCCCceEEeEeeec--CCceEEE
Confidence 8899999999886554 4566666679999999987 5789999999999999887777666544 4589999
Q ss_pred EEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceE
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (1101)
..-.+|.+|- |+.|+.|..||-. .+..+..+
T Consensus 294 ~~lr~GtllS-GgKDRki~~Wd~~--y~k~r~~e---------------------------------------------- 324 (626)
T KOG2106|consen 294 CMLRDGTLLS-GGKDRKIILWDDN--YRKLRETE---------------------------------------------- 324 (626)
T ss_pred EEecCccEee-cCccceEEecccc--cccccccc----------------------------------------------
Confidence 9999997666 9999999999922 12221111
Q ss_pred EEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee
Q 001319 716 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 795 (1101)
Q Consensus 716 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1101)
+|+ ..+.|..++-.. +. |+.+...+.|..=.+ +++..+.
T Consensus 325 --------------lPe---~~G~iRtv~e~~-~d-i~vGTtrN~iL~Gt~----------------------~~~f~~~ 363 (626)
T KOG2106|consen 325 --------------LPE---QFGPIRTVAEGK-GD-ILVGTTRNFILQGTL----------------------ENGFTLT 363 (626)
T ss_pred --------------Cch---hcCCeeEEecCC-Cc-EEEeeccceEEEeee----------------------cCCceEE
Confidence 111 222222222211 11 444444433332221 1122111
Q ss_pred eccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 796 NDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 796 ~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
. .+|.+....++..|+...+++++ |+.+++|+ ..++..+.. -..++.|+.|+| .+ .+|.|+..|...+.|
T Consensus 364 v----~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~-~~d~~~~~~fhp-sg-~va~Gt~~G~w~V~d 434 (626)
T KOG2106|consen 364 V----QGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKI-IEDPAECADFHP-SG-VVAVGTATGRWFVLD 434 (626)
T ss_pred E----EecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEE-ecCceeEeeccC-cc-eEEEeeccceEEEEe
Confidence 1 14888999999999999998888 99999999 445544433 356889999999 67 999999999999999
Q ss_pred eecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-
Q 001319 875 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV- 953 (1101)
Q Consensus 875 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~- 953 (1101)
.++..++..-.. ..++++++|+|+|.+||.|+.|+.|.+|.++.........-.. .+ ..++.+.||+|++++.+
T Consensus 435 ~e~~~lv~~~~d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~-~g---s~ithLDwS~Ds~~~~~~ 509 (626)
T KOG2106|consen 435 TETQDLVTIHTD-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKC-SG---SPITHLDWSSDSQFLVSN 509 (626)
T ss_pred cccceeEEEEec-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeee-cC---ceeEEeeecCCCceEEec
Confidence 999777665555 8899999999999999999999999999998766443332221 12 78999999999999999
Q ss_pred EeCCeEEEEEcCCceeeeE--------------e-ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEee
Q 001319 954 VHETQLAIYDASKMERIRQ--------------W-TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 954 ~~d~~i~v~d~~~~~~~~~--------------~-~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1018 (1101)
+.|-.|-.|....-+.+.. + .....+...|..++-|.+.+++++|...|.|++|...--+..+-.
T Consensus 510 S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s~rA~~ 589 (626)
T KOG2106|consen 510 SGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSSPRAPS 589 (626)
T ss_pred cCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCCCcccc
Confidence 5588999995433222211 1 111234667788888899999999999999999998755443322
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
. .+.+|+. .+++++|.- +...|.+.+.|..|..|++
T Consensus 590 h-------e~~ghs~--~vt~V~Fl~-~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 590 H-------EYGGHSS--HVTNVAFLC-KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred e-------eeccccc--eeEEEEEee-CCceEEecCCCceEEEEEe
Confidence 1 1222444 567999998 4566666669999999986
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-34 Score=271.52 Aligned_cols=289 Identities=17% Similarity=0.231 Sum_probs=248.6
Q ss_pred ceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
......+|+++|..+.|+|+|. ++|+|+.|..|.+|++..... ...++++|.++|..+.|.
T Consensus 39 p~m~l~gh~geI~~~~F~P~gs-~~aSgG~Dr~I~LWnv~gdce------------------N~~~lkgHsgAVM~l~~~ 99 (338)
T KOG0265|consen 39 PIMLLPGHKGEIYTIKFHPDGS-CFASGGSDRAIVLWNVYGDCE------------------NFWVLKGHSGAVMELHGM 99 (338)
T ss_pred hhhhcCCCcceEEEEEECCCCC-eEeecCCcceEEEEecccccc------------------ceeeeccccceeEeeeec
Confidence 3445668999999999999998 579999999999999754322 112478999999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
+|+..|++++.|.+|+.||+++|++.+ .+++|..-|+++.-+.-|.. ++.|++.|+++++|| .+..+++++. ..
T Consensus 100 ~d~s~i~S~gtDk~v~~wD~~tG~~~r---k~k~h~~~vNs~~p~rrg~~-lv~SgsdD~t~kl~D~R~k~~~~t~~-~k 174 (338)
T KOG0265|consen 100 RDGSHILSCGTDKTVRGWDAETGKRIR---KHKGHTSFVNSLDPSRRGPQ-LVCSGSDDGTLKLWDIRKKEAIKTFE-NK 174 (338)
T ss_pred cCCCEEEEecCCceEEEEecccceeee---hhccccceeeecCccccCCe-EEEecCCCceEEEEeecccchhhccc-cc
Confidence 999999999999999999999999888 67899999999996655665 789999999999999 6666666664 45
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE- 573 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~- 573 (1101)
-++++++|.. .+..+++|+-|+.|++||++.......+.+|...|+.+..+++|.++.+.+. +.++++||.+.
T Consensus 175 yqltAv~f~d--~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsM----d~tvrvwd~rp~ 248 (338)
T KOG0265|consen 175 YQLTAVGFKD--TSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSM----DNTVRVWDVRPF 248 (338)
T ss_pred eeEEEEEecc--cccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccc----cceEEEEEeccc
Confidence 5789999865 4568999999999999999999999999999999999999999999999886 99999999874
Q ss_pred ---CeeEEEecccCCc---ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 574 ---GTIKRTYAGFRKK---SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 574 ---~~~~~~~~~~~~~---~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
.+++..+.++... ..-.++|+|++..+-+|+.|..+++||......+..++++. ..|++++|+|...+|.++
T Consensus 249 ~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh~--gsvn~~~Fhp~e~iils~ 326 (338)
T KOG0265|consen 249 APSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGHY--GSVNEVDFHPTEPIILSC 326 (338)
T ss_pred CCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCcc--eeEEEeeecCCCcEEEEe
Confidence 4557778776431 23347899999999999999999999999888888887664 489999999999999999
Q ss_pred EcCCcEEEE
Q 001319 648 TADNGFKIL 656 (1101)
Q Consensus 648 ~~d~~i~iw 656 (1101)
+.|.+|++=
T Consensus 327 ~sdk~i~lg 335 (338)
T KOG0265|consen 327 SSDKTIYLG 335 (338)
T ss_pred ccCceeEee
Confidence 999998873
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-35 Score=291.54 Aligned_cols=282 Identities=22% Similarity=0.330 Sum_probs=247.8
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
+..|..|.|.|+|++| ++|+..|.+.+|+..+-. | ..++..|..+|.++.||++|.++++
T Consensus 96 kc~V~~v~WtPeGRRL-ltgs~SGEFtLWNg~~fn------F-------------EtilQaHDs~Vr~m~ws~~g~wmiS 155 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRL-LTGSQSGEFTLWNGTSFN------F-------------ETILQAHDSPVRTMKWSHNGTWMIS 155 (464)
T ss_pred ccceeeEEEcCCCcee-EeecccccEEEecCceee------H-------------HHHhhhhcccceeEEEccCCCEEEE
Confidence 4589999999999975 799999999999963311 1 1257889999999999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
|+.+|.|++|+..-.. ++ .+.+ |...|++++|+|.+. .+++|++||+|+||| ...+.-..+.||.-.|.++.
T Consensus 156 gD~gG~iKyWqpnmnn-Vk---~~~ahh~eaIRdlafSpnDs--kF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvd 229 (464)
T KOG0284|consen 156 GDKGGMIKYWQPNMNN-VK---IIQAHHAEAIRDLAFSPNDS--KFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVD 229 (464)
T ss_pred cCCCceEEecccchhh-hH---HhhHhhhhhhheeccCCCCc--eeEEecCCCeEEEEeccCCchhheeccCCCCcceec
Confidence 9999999999987543 22 2444 448999999999888 799999999999999 88888888999999999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
|+|.. .+|++++.|..|++||.+++.++.++..|...|..+.|++++++|++++. |..++++|+++.+.+++++
T Consensus 230 WHP~k--gLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~sk----D~~~kv~DiR~mkEl~~~r 303 (464)
T KOG0284|consen 230 WHPTK--GLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSK----DQSCKVFDIRTMKELFTYR 303 (464)
T ss_pred cCCcc--ceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccC----CceEEEEehhHhHHHHHhh
Confidence 99965 69999999999999999999999999999999999999999999999986 8899999999999999999
Q ss_pred ccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 582 GFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+|.. .+.++.|+|-. ..|.+|+.||.|..|.+...+.+..+. ..+...|.+++|+|-|.+|++|+.|.++++|.-.
T Consensus 304 ~Hkk-dv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~-~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 304 GHKK-DVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIP-PAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred cchh-hheeeccccccccceeeccCCCceEEEeccccccccCCC-cccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 9988 89999999954 566678999999999998666665554 3456689999999999999999999999999754
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-31 Score=288.53 Aligned_cols=475 Identities=15% Similarity=0.207 Sum_probs=330.7
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+......|..++|+|..-+++++-..|.|++||..-+.++. .+..|.++|+.++|+|++. +++||++|..|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~---rFdeHdGpVRgv~FH~~qp--lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLID---RFDEHDGPVRGVDFHPTQP--LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHh---hhhccCCccceeeecCCCC--eEEecCCccEEEEEe
Confidence 44467789999999999999999999999999999998887 6789999999999999999 999999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+.+|+.++.||-+.|..+.|++.- .+|+++|.|.+|+||+..+.+++..+.+|.+.|+|..|.|....+++++-
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHhey--PWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSL-- 155 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEY--PWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASL-- 155 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCC--ceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecc--
Confidence 9999999999999999999999843 69999999999999999999999999999999999999999999999987
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
|.+|++||+..-+....-.+.-... + .+... ..-++--...-....++ +|...|+-++|+|.
T Consensus 156 --DQTVRVWDisGLRkk~~~pg~~e~~---~----~~~~~-------~~dLfg~~DaVVK~VLE--GHDRGVNwaAfhpT 217 (1202)
T KOG0292|consen 156 --DQTVRVWDISGLRKKNKAPGSLEDQ---M----RGQQG-------NSDLFGQTDAVVKHVLE--GHDRGVNWAAFHPT 217 (1202)
T ss_pred --cceEEEEeecchhccCCCCCCchhh---h----hcccc-------chhhcCCcCeeeeeeec--ccccccceEEecCC
Confidence 8999999987543322222200000 0 01110 00011111111223344 44558999999999
Q ss_pred CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEE
Q 001319 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIV 720 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (1101)
-.++++|++|..|++|..... + .|++
T Consensus 218 lpliVSG~DDRqVKlWrmnet-K----------------------------------------------------aWEv- 243 (1202)
T KOG0292|consen 218 LPLIVSGADDRQVKLWRMNET-K----------------------------------------------------AWEV- 243 (1202)
T ss_pred cceEEecCCcceeeEEEeccc-c----------------------------------------------------ceee-
Confidence 999999999999999987543 1 1111
Q ss_pred eCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCC
Q 001319 721 DSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1101)
....+|.+.|.++.|+|....+++.+.|+.+++||+..... +....
T Consensus 244 ----------DtcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~----------------------v~tfr-- 289 (1202)
T KOG0292|consen 244 ----------DTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS----------------------VQTFR-- 289 (1202)
T ss_pred ----------hhhhcccCCcceEEecCccceeEecCCCccEEEEecccccc----------------------eeeee--
Confidence 11266999999999999999999999999999999764311 11000
Q ss_pred CCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 801 VNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 801 ~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
...+..+.++..|...++|+|.|+.+.||.++.-.+ +.+.+ + ..|...- |..|+-+|+.+.+-
T Consensus 290 -rendRFW~laahP~lNLfAAgHDsGm~VFkleRErp------------a~~v~--~-n~LfYvk-d~~i~~~d~~t~~d 352 (1202)
T KOG0292|consen 290 -RENDRFWILAAHPELNLFAAGHDSGMIVFKLERERP------------AYAVN--G-NGLFYVK-DRFIRSYDLRTQKD 352 (1202)
T ss_pred -ccCCeEEEEEecCCcceeeeecCCceEEEEEcccCc------------eEEEc--C-CEEEEEc-cceEEeeecccccc
Confidence 156778999999999999999998888887753222 22332 2 3344443 88999999988543
Q ss_pred --EEeeccC---CCCeeEEEEcCCCCEEEEE-e-CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 881 --KSKLKGH---QKRITGLAFSTSLNILVSS-G-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 881 --~~~~~~h---~~~V~~l~~s~d~~~l~s~-s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
+..++.. -.++.++.++|..+.+..+ . ..|.-.++.+.......... ..... +.-....|-..+++.+.
T Consensus 353 ~~v~~lr~~g~~~~~~~smsYNpae~~vlics~~~n~~y~L~~ipk~~~~~~~~---~~~~k-~tG~~a~fvarNrfavl 428 (1202)
T KOG0292|consen 353 TAVASLRRPGTLWQPPRSLSYNPAENAVLICSNLDNGEYELVQIPKDSDGVSDG---KDVKK-GTGEGALFVARNRFAVL 428 (1202)
T ss_pred ceeEeccCCCcccCCcceeeeccccCeEEEEeccCCCeEEEEEecCcccccCCc---hhhhc-CCCCceEEEEecceEEE
Confidence 3344432 3678999999986644434 3 34555555554421111000 00000 11112223333333222
Q ss_pred E-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 954 V-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 954 ~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
. ++..+.+-++.+.. .+.+.. ...+..+-+..+|.+|+.. ...|.+||++..+....+.
T Consensus 429 ~k~~~~v~ik~l~N~v-tkkl~~----~~~~~~IF~ag~g~lll~~--~~~v~lfdvQq~~~~~si~ 488 (1202)
T KOG0292|consen 429 DKSNEQVVIKNLKNKV-TKKLLL----PESTDDIFYAGTGNLLLRS--PDSVTLFDVQQKKKVGSIK 488 (1202)
T ss_pred EecCcceEEecccchh-hhcccC----cccccceeeccCccEEEEc--CCeEEEEEeecceEEEEEe
Confidence 2 23444444443222 222221 2345667777777766543 3468999999988877776
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-33 Score=256.02 Aligned_cols=289 Identities=18% Similarity=0.249 Sum_probs=247.9
Q ss_pred CCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE
Q 001319 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
+|.+-..++. |.++|.++.|+-||+|. .+++.|.+|++|+...|.+++ ++.+|...|..
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~-ltcGsdrtvrLWNp~rg~lik-------------------tYsghG~EVlD 64 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYC-LTCGSDRTVRLWNPLRGALIK-------------------TYSGHGHEVLD 64 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEE-EEcCCCceEEeecccccceee-------------------eecCCCceeee
Confidence 3443444455 89999999999999975 566799999999999998886 48899999999
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE---cCCceeE
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE---LSGRKLF 488 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd---~~~~~~~ 488 (1101)
++.+.|...+|+|+.|..|.+||+++|+.++ .+.+|.+.|+.++|+.+.. .+++|+.|.++++|| ..-++++
T Consensus 65 ~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~R---r~rgH~aqVNtV~fNeesS--Vv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 65 AALSSDNSKFASCGGDKAVQVWDVNTGKVDR---RFRGHLAQVNTVRFNEESS--VVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred ccccccccccccCCCCceEEEEEcccCeeee---ecccccceeeEEEecCcce--EEEeccccceeEEEEcccCCCCccc
Confidence 9999999999999999999999999999888 6889999999999999998 999999999999999 4557788
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
.+......|.++.+. +..|++|+.||++|.||++.+.....+ -+++|++++|++|++..+.++- ++++++
T Consensus 140 ildea~D~V~Si~v~----~heIvaGS~DGtvRtydiR~G~l~sDy--~g~pit~vs~s~d~nc~La~~l----~stlrL 209 (307)
T KOG0316|consen 140 ILDEAKDGVSSIDVA----EHEIVAGSVDGTVRTYDIRKGTLSSDY--FGHPITSVSFSKDGNCSLASSL----DSTLRL 209 (307)
T ss_pred hhhhhcCceeEEEec----ccEEEeeccCCcEEEEEeecceeehhh--cCCcceeEEecCCCCEEEEeec----cceeee
Confidence 888888899999874 367999999999999999887665443 4567999999999999998886 899999
Q ss_pred EeCCCCeeEEEecccCCcceE-EEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 569 WNESEGTIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
.|-++|+++..+.||.+.... ..+++....++++|++||.|++||+.....+..+..++. ..|.+++++|.-..++++
T Consensus 210 lDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~-v~v~dl~~hp~~~~f~~A 288 (307)
T KOG0316|consen 210 LDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVST-VIVTDLSCHPTMDDFITA 288 (307)
T ss_pred cccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCc-eeEEeeecccCccceeEe
Confidence 999999999999999874432 356777778999999999999999999999998887654 247899999987777777
Q ss_pred EcCCcEEEEEc
Q 001319 648 TADNGFKILAN 658 (1101)
Q Consensus 648 ~~d~~i~iwd~ 658 (1101)
.. +.+..|.-
T Consensus 289 ~~-~~~~~~~~ 298 (307)
T KOG0316|consen 289 TG-HGDLFWYQ 298 (307)
T ss_pred cC-Cceeceee
Confidence 64 44555643
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-33 Score=271.79 Aligned_cols=294 Identities=16% Similarity=0.276 Sum_probs=258.8
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+++.+|.++|.|+++.|-.+++++|+.|++|+|||+.+|+... ++.||...|..+++|+-.. |+++++.|+.|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~Lkl---tltGhi~~vr~vavS~rHp--YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKL---TLTGHIETVRGVAVSKRHP--YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEE---eecchhheeeeeeecccCc--eEEEecCCCeeEE
Confidence 4689999999999999999999999999999999999998665 7889999999999999888 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| ...+.++.+.||-..|.+++.+|.- ..|++|+.|.++|+||+++......+.+|...|.++.+.|-...+++|+.
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTl--dvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~ 297 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTL--DVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSH 297 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccc--eeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecC
Confidence 99 8889999999999999999999865 68999999999999999999999999999999999999999999999986
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
|++|++||+..|+...++..|.. .+.+++.+|....+++++.| .|+-|++..|..+..+..+. .-|++++.+
T Consensus 298 ----D~tvrlWDl~agkt~~tlt~hkk-svral~lhP~e~~fASas~d-nik~w~~p~g~f~~nlsgh~--~iintl~~n 369 (460)
T KOG0285|consen 298 ----DSTVRLWDLRAGKTMITLTHHKK-SVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLSGHN--AIINTLSVN 369 (460)
T ss_pred ----CceEEEeeeccCceeEeeecccc-eeeEEecCCchhhhhccCCc-cceeccCCccchhhcccccc--ceeeeeeec
Confidence 99999999999999999988876 89999999999888888877 68999999999988876654 468899988
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
.|| .+++|+++|.+.+||..++ ...+..+..
T Consensus 370 sD~-v~~~G~dng~~~fwdwksg-~nyQ~~~t~----------------------------------------------- 400 (460)
T KOG0285|consen 370 SDG-VLVSGGDNGSIMFWDWKSG-HNYQRGQTI----------------------------------------------- 400 (460)
T ss_pred cCc-eEEEcCCceEEEEEecCcC-ccccccccc-----------------------------------------------
Confidence 777 7888999999999999988 222222110
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
..|+.......|...+|...|.+|+++..|.+|++|.-+
T Consensus 401 ----------vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 401 ----------VQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ----------ccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 001112256778999999999999999999999999744
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-33 Score=273.94 Aligned_cols=285 Identities=21% Similarity=0.294 Sum_probs=259.3
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|..+|+.+-|.|+-..+|+++.|++|++||..+|+..+ .++||.+.|.+++|+..|+ ++++++.|-.+++|
T Consensus 103 ~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e~---~LrGHt~sv~di~~~a~Gk--~l~tcSsDl~~~LW 177 (406)
T KOG0295|consen 103 KLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELER---SLRGHTDSVFDISFDASGK--YLATCSSDLSAKLW 177 (406)
T ss_pred hhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhhh---hhhccccceeEEEEecCcc--EEEecCCccchhhe
Confidence 377899999999999999999999999999999999999866 7899999999999999999 89999999999999
Q ss_pred E--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 481 d--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
| ..-+++..+.+|...|.+++|-|. |.++++++.|.+|+.|+++++-++.++.+|..+|..+..+.||..+++++.
T Consensus 178 d~~~~~~c~ks~~gh~h~vS~V~f~P~--gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~ 255 (406)
T KOG0295|consen 178 DFDTFFRCIKSLIGHEHGVSSVFFLPL--GDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSN 255 (406)
T ss_pred eHHHHHHHHHHhcCcccceeeEEEEec--CCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCC
Confidence 9 336788999999999999999885 479999999999999999999999999999999999999999999999985
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC---------------CCEEEEEeCCCcEEEEECCCCeeeEee
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT---------------QNHFLAVGEDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~---------------~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1101)
+.+|++|-..++++...++.|.- .+.+++|-|. +.++.+++.|++|++||+.++.++.++
T Consensus 256 ----dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL 330 (406)
T KOG0295|consen 256 ----DQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTL 330 (406)
T ss_pred ----CceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEE
Confidence 89999999999999999998876 8888888653 248889999999999999999999999
Q ss_pred ccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcce
Q 001319 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (1101)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 703 (1101)
.++.. .|..++|+|.|++|+++.+|+++++||+.+. .+...+..
T Consensus 331 ~ghdn--wVr~~af~p~Gkyi~ScaDDktlrvwdl~~~-~cmk~~~a--------------------------------- 374 (406)
T KOG0295|consen 331 VGHDN--WVRGVAFSPGGKYILSCADDKTLRVWDLKNL-QCMKTLEA--------------------------------- 374 (406)
T ss_pred ecccc--eeeeeEEcCCCeEEEEEecCCcEEEEEeccc-eeeeccCC---------------------------------
Confidence 87765 8999999999999999999999999999887 45444432
Q ss_pred eccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 704 ERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
|..-++++.|..+..++++|+-|.++++|.
T Consensus 375 --------------------------------h~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 375 --------------------------------HEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred --------------------------------CcceeEEEecCCCCceEEeccccceeeeee
Confidence 667788889999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-33 Score=312.61 Aligned_cols=285 Identities=22% Similarity=0.376 Sum_probs=251.3
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCc--eeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
|...|.++.|||+|++ +++++.|+.+++|+..+++ ... .+.+|...|.+++|+|||++
T Consensus 158 ~~~sv~~~~fs~~g~~-l~~~~~~~~i~~~~~~~~~~~~~~-------------------~l~~h~~~v~~~~fs~d~~~ 217 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRA-LAAASSDGLIRIWKLEGIKSNLLR-------------------ELSGHTRGVSDVAFSPDGSY 217 (456)
T ss_pred ccCceEEEEEcCCCCe-EEEccCCCcEEEeecccccchhhc-------------------cccccccceeeeEECCCCcE
Confidence 4789999999999996 6889999999999997665 222 36889999999999999999
Q ss_pred EEEEECCCeEEEEee-cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
+++|+.|++|+|||+ ..+.+++ ++.+|...|++++|+|+|+ ++++|+.|++|+||| .+++++..+.+|.+.|+
T Consensus 218 l~s~s~D~tiriwd~~~~~~~~~---~l~gH~~~v~~~~f~p~g~--~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is 292 (456)
T KOG0266|consen 218 LLSGSDDKTLRIWDLKDDGRNLK---TLKGHSTYVTSVAFSPDGN--LLVSGSDDGTVRIWDVRTGECVRKLKGHSDGIS 292 (456)
T ss_pred EEEecCCceEEEeeccCCCeEEE---EecCCCCceEEEEecCCCC--EEEEecCCCcEEEEeccCCeEEEeeeccCCceE
Confidence 999999999999999 4445555 7889999999999999997 899999999999999 78999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCC--ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
+++|.+ ++.+|++++.|+.|++||+.++. ....+..+.. .++++.|+|+++++++++. ++.+++||+..+
T Consensus 293 ~~~f~~--d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~----d~~~~~w~l~~~ 366 (456)
T KOG0266|consen 293 GLAFSP--DGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASL----DRTLKLWDLRSG 366 (456)
T ss_pred EEEECC--CCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecC----CCeEEEEEccCC
Confidence 999977 67899999999999999999988 3455554444 4999999999999999985 889999999999
Q ss_pred eeEEEecccCCc--ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE--cC
Q 001319 575 TIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--AD 650 (1101)
Q Consensus 575 ~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~--~d 650 (1101)
.....+.+|... .+.....++.+.++++|+.|+.|++||+.++..+..+..+. ...+..+.++|..+++++++ .|
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h~-~~~~~~~~~~~~~~~~~s~s~~~d 445 (456)
T KOG0266|consen 367 KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGHS-KAAVSDLSSHPTENLIASSSFEGD 445 (456)
T ss_pred cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCCC-CCceeccccCCCcCeeeecCcCCC
Confidence 999999999874 33345567889999999999999999999999888888774 55789999999999999998 78
Q ss_pred CcEEEEEcc
Q 001319 651 NGFKILANA 659 (1101)
Q Consensus 651 ~~i~iwd~~ 659 (1101)
+.+++|...
T Consensus 446 ~~~~~w~~~ 454 (456)
T KOG0266|consen 446 GLIRLWKYD 454 (456)
T ss_pred ceEEEecCC
Confidence 899999753
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-29 Score=267.11 Aligned_cols=548 Identities=13% Similarity=0.139 Sum_probs=387.6
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
...+|.++|||.+.+.||.+-.||.|.||++..+=.... .+.++. ..|.+++|++.++ |+|.+.+|.|.-|| .
T Consensus 24 ~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~--vi~g~~drsIE~L~W~e~~R---LFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEP--VIHGPEDRSIESLAWAEGGR---LFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeE--EEecCCCCceeeEEEccCCe---EEeecCCceEEEEecc
Confidence 456899999999999999999999999999998643332 455554 5899999996665 89999999999999 9
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee--ccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+++....+....+.|++++.+|.. ..++.|+.||.+..++...+..... +....+.+.++.|.|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~--~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~-- 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPEN--TILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI-- 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCcc--ceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc--
Confidence 999999999999999999998854 6899999999887777776665543 3344568999999999999999986
Q ss_pred CCCceEEEEeCCCCeeEEEec-----cc--CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 561 DGDSFLVEWNESEGTIKRTYA-----GF--RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~-----~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
||.|++||..++..+.... .. ....++++.|-.+ ..+++|..-|+|.+||...+.+++.+..+.. .|.
T Consensus 175 --Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~a--dVl 249 (691)
T KOG2048|consen 175 --DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDA--DVL 249 (691)
T ss_pred --CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhc--cee
Confidence 9999999999988766211 11 2224666777655 5899999999999999999999998887754 799
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1101)
+++.++++.++++++.|+.|.-+...+........
T Consensus 250 ~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~--------------------------------------------- 284 (691)
T KOG2048|consen 250 ALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVIN--------------------------------------------- 284 (691)
T ss_pred EEEEcCCCCeEEEccCCCceEEEEecCCccceeee---------------------------------------------
Confidence 99999999999999999999888766552210000
Q ss_pred eEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccc
Q 001319 714 IILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793 (1101)
Q Consensus 714 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1101)
.....|...|.++++.++ .+++++.|+++.+-.....+. .+ ..
T Consensus 285 -----------------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~--------------~~---h~- 327 (691)
T KOG2048|consen 285 -----------------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKN--------------MD---HR- 327 (691)
T ss_pred -----------------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCc--------------hh---hh-
Confidence 000347888888888887 689999998887643321100 00 00
Q ss_pred eeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceE---------EEEeeCCCCCeeEEEEecCCCCEEEEE
Q 001319 794 MANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKV---------MTTFMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 794 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---------~~~~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
+... ..... -+...+..++++.-.+..+.+|.+.+... ..........|.+.+.|| +|+++|.+
T Consensus 328 ~~~~----~p~~~--~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSP-dg~~Ia~s 400 (691)
T KOG2048|consen 328 QKNL----FPASD--RVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISP-DGNLIAIS 400 (691)
T ss_pred cccc----ccccc--eeecCccceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCC-CCCEEEEe
Confidence 0000 01111 13334555555555677788887765411 122223345699999999 99999887
Q ss_pred eCCCcEEEEEeecceEEE-----eeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 865 TEDSTIHIYNVRVDEVKS-----KLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~-----~~~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
. -..++||.+.....+. ....-.-....+.|+-|+..++.++ .+..+.+.++++...+....+... . ....
T Consensus 401 t-~~~~~iy~L~~~~~vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~-~~~~ 477 (691)
T KOG2048|consen 401 T-VSRTKIYRLQPDPNVKVINVDDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-A-KCPS 477 (691)
T ss_pred e-ccceEEEEeccCcceeEEEeccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-c-CCCc
Confidence 6 4568888887532221 1122334577889999988888887 778888998888665554444332 2 2278
Q ss_pred cceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeE
Q 001319 939 DTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLRLRC 1016 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~ 1016 (1101)
++.+..|++|.++|+ +..+.|.+|++++++........ ...|++++|+| +-..|+.+..++.+.-||++..++ .
T Consensus 478 I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~rl---n~~vTa~~~~~~~~~~lvvats~nQv~efdi~~~~l-~ 553 (691)
T KOG2048|consen 478 ISRLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVRL---NIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEARNL-T 553 (691)
T ss_pred ceeEEEcCCCCEEEEEeccceEEEEEcccceeecchhcc---CcceeeeeccccccCcEEEEecCCeEEEEecchhhh-h
Confidence 999999999999999 56999999999998876555333 67899999995 556789999999999999954432 2
Q ss_pred eeCCCC--cCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1017 YIAPST--YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1017 ~~~~~~--~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
++.... .++.....-.+ .+..+.|+|.....++ .-..+-+.+.|..
T Consensus 554 ~ws~~nt~nlpk~~~~l~~--~~~gisfd~~n~s~~~-~~~a~w~~~id~~ 601 (691)
T KOG2048|consen 554 RWSKNNTRNLPKEPKTLIP--GIPGISFDPKNSSRFI-VYDAHWSCLIDFS 601 (691)
T ss_pred hhhhccccccccChhhcCC--CCceEEeCCCCccEEE-EEcCcEEEEEecC
Confidence 221111 01111111112 2346777774333333 3334556666654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-34 Score=275.41 Aligned_cols=275 Identities=20% Similarity=0.287 Sum_probs=235.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
....|.|+.+..+ .+++|..|++|+|||.++.+++. ++.||++.|.|+.| |.+.|+
T Consensus 196 ~skgVYClQYDD~---kiVSGlrDnTikiWD~n~~~c~~-------------------~L~GHtGSVLCLqy--d~rvii 251 (499)
T KOG0281|consen 196 NSKGVYCLQYDDE---KIVSGLRDNTIKIWDKNSLECLK-------------------ILTGHTGSVLCLQY--DERVIV 251 (499)
T ss_pred cCCceEEEEecch---hhhcccccCceEEeccccHHHHH-------------------hhhcCCCcEEeeec--cceEEE
Confidence 3568999999754 35899999999999998877664 59999999999998 567999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc---eeEEeecCCcCeE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPVY 498 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~---~~~~~~~h~~~v~ 498 (1101)
+|+.|.+|+|||+++|+++. ++-+|...|..+.|+.. ++++++.|.++.+|| .... +.+.+.||...|+
T Consensus 252 sGSSDsTvrvWDv~tge~l~---tlihHceaVLhlrf~ng----~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVN 324 (499)
T KOG0281|consen 252 SGSSDSTVRVWDVNTGEPLN---TLIHHCEAVLHLRFSNG----YMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN 324 (499)
T ss_pred ecCCCceEEEEeccCCchhh---HHhhhcceeEEEEEeCC----EEEEecCCceeEEEeccCchHHHHHHHHhhhhhhee
Confidence 99999999999999999988 67899999999999843 799999999999999 3332 3467789999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.+.|. .+++++++.|.+|++|++.+.+....+.+|...|.|+.+ .|+++++|+. |.+|++||++.|.+++
T Consensus 325 vVdfd----~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSS----DntIRlwdi~~G~cLR 394 (499)
T KOG0281|consen 325 VVDFD----DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACLR 394 (499)
T ss_pred eeccc----cceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCC----CceEEEEeccccHHHH
Confidence 99883 369999999999999999999999999999999988876 6888999886 9999999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEe-------eccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS-------TDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~-------~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
.++||.. .+.++.|. .+.+++|+.||+|++||+..+..... .....+.+.|..+.| |...+++++.|.
T Consensus 395 vLeGHEe-LvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv~hsgRVFrLQF--D~fqIvsssHdd 469 (499)
T KOG0281|consen 395 VLEGHEE-LVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLVEHSGRVFRLQF--DEFQIISSSHDD 469 (499)
T ss_pred HHhchHH-hhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhhhccceeEEEee--cceEEEeccCCC
Confidence 9999988 89999986 57999999999999999987643311 112233447888888 677899999999
Q ss_pred cEEEEEcccccc
Q 001319 652 GFKILANAIGLR 663 (1101)
Q Consensus 652 ~i~iwd~~~~~~ 663 (1101)
+|.|||..++..
T Consensus 470 tILiWdFl~~~~ 481 (499)
T KOG0281|consen 470 TILIWDFLNGPP 481 (499)
T ss_pred eEEEEEcCCCCc
Confidence 999999987743
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-32 Score=258.23 Aligned_cols=287 Identities=18% Similarity=0.280 Sum_probs=246.2
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
..+.+|++.|..+.|+|+|.+||+|+.|..|.+|++.... ..+..+++|.+.|..+.|.+|+. .+++++.|++|+.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--eN~~~lkgHsgAVM~l~~~~d~s--~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--ENFWVLKGHSGAVMELHGMRDGS--HILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--cceeeeccccceeEeeeeccCCC--EEEEecCCceEEE
Confidence 4588999999999999999999999999999999976533 23346889999999999999999 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| .+|++++.+++|..-|+++..... +-.++.+++.|+++++||++..+....+. ..-.++++.|..++..+.+|+-
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rr-g~~lv~SgsdD~t~kl~D~R~k~~~~t~~-~kyqltAv~f~d~s~qv~sggI 194 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRR-GPQLVCSGSDDGTLKLWDIRKKEAIKTFE-NKYQLTAVGFKDTSDQVISGGI 194 (338)
T ss_pred EecccceeeehhccccceeeecCcccc-CCeEEEecCCCceEEEEeecccchhhccc-cceeEEEEEecccccceeeccc
Confidence 99 999999999999999999985432 34678899999999999999877766553 3346899999999999999986
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC----CeeeEeeccCCCCC--CC
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN----VNILTSTDAEGGLP--NL 632 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~----~~~~~~~~~~~~~~--~v 632 (1101)
|+.|++||++.......+.||.+ .|..+..+++|.++.+-+.|.++++||++. .+++..+.++.+.- ..
T Consensus 195 ----dn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknl 269 (338)
T KOG0265|consen 195 ----DNDIKVWDLRKNDGLYTLSGHAD-TITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNL 269 (338)
T ss_pred ----cCceeeeccccCcceEEeecccC-ceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhc
Confidence 88899999999999999999998 899999999999999999999999999874 34466666554432 33
Q ss_pred CeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCC
Q 001319 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 712 (1101)
..++|+|+++.+..|+.|..+++||.... ..+.
T Consensus 270 L~cswsp~~~~i~ags~dr~vyvwd~~~r-~~ly---------------------------------------------- 302 (338)
T KOG0265|consen 270 LKCSWSPNGTKITAGSADRFVYVWDTTSR-RILY---------------------------------------------- 302 (338)
T ss_pred ceeeccCCCCccccccccceEEEeecccc-cEEE----------------------------------------------
Confidence 57889999999999999999999997654 2221
Q ss_pred ceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEE
Q 001319 713 PIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 763 (1101)
Q Consensus 713 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~ 763 (1101)
.+ .+|.+.|..+.|+|....|.+++.|.+|.+
T Consensus 303 ----------------kl---pGh~gsvn~~~Fhp~e~iils~~sdk~i~l 334 (338)
T KOG0265|consen 303 ----------------KL---PGHYGSVNEVDFHPTEPIILSCSSDKTIYL 334 (338)
T ss_pred ----------------Ec---CCcceeEEEeeecCCCcEEEEeccCceeEe
Confidence 22 349999999999999999999999988865
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=271.43 Aligned_cols=293 Identities=18% Similarity=0.344 Sum_probs=247.6
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe---eeeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
+..+.+..|...|+-+.|++ +|++||+++.|.+..+|++..... ..++.+|..+|..+.||||.+++++|+.
T Consensus 215 qt~qil~~htdEVWfl~FS~--nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~--- 289 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSH--NGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGF--- 289 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcC--CCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCc---
Confidence 34466778999999999977 789999999999999999876655 6678889999999999999999999997
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
+..+.+||..+|.....+....+..+.+++|.|||..+++|+.|+.+..||+.. ......+... ...|.+++.++||
T Consensus 290 -~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDg-n~~~~W~gvr-~~~v~dlait~Dg 366 (519)
T KOG0293|consen 290 -DEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDG-NILGNWEGVR-DPKVHDLAITYDG 366 (519)
T ss_pred -hHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCc-chhhcccccc-cceeEEEEEcCCC
Confidence 667999999999999988876666899999999999999999999999999864 3444443322 2468999999999
Q ss_pred CEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
+++++.+.|..|++++.++.... .
T Consensus 367 k~vl~v~~d~~i~l~~~e~~~dr-~------------------------------------------------------- 390 (519)
T KOG0293|consen 367 KYVLLVTVDKKIRLYNREARVDR-G------------------------------------------------------- 390 (519)
T ss_pred cEEEEEecccceeeechhhhhhh-c-------------------------------------------------------
Confidence 99999999999999887644100 0
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCC
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1101)
++
T Consensus 391 ------------------------------li------------------------------------------------ 392 (519)
T KOG0293|consen 391 ------------------------------LI------------------------------------------------ 392 (519)
T ss_pred ------------------------------cc------------------------------------------------
Confidence 00
Q ss_pred CCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCC--eeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 802 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
....+|+++++|.||+++.+.- +..+++||++..+.++.+.+|... +-.-||.-.+..++|+|++|+.|+||+..+|
T Consensus 393 se~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sg 472 (519)
T KOG0293|consen 393 SEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISG 472 (519)
T ss_pred cccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCC
Confidence 1456788999999999888775 889999999999999999998765 5555776656689999999999999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEECCC
Q 001319 879 EVKSKLKGHQKRITGLAFSTSL-NILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~lwd~~~ 919 (1101)
+++.++.||...|++++|+|.. ..+||||+||+||||....
T Consensus 473 kll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 473 KLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 9999999999999999999965 5899999999999998875
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-32 Score=295.83 Aligned_cols=246 Identities=19% Similarity=0.343 Sum_probs=226.7
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc--------cc--------------------ccceeeecccCcEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--------DL--------------------RQHSQIDAHVGAVND 456 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~--------~~--------------------~~~~~l~~h~~~V~~ 456 (1101)
....++|+.||+|+..||.|..|..|++|.+...+ .+ ....++.||.++|..
T Consensus 377 t~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg 456 (707)
T KOG0263|consen 377 TYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYG 456 (707)
T ss_pred cCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceee
Confidence 34589999999999999999999999999987421 00 112357899999999
Q ss_pred EEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc
Q 001319 457 LAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 457 l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 535 (1101)
+.|+|+.+ +|++|+.|++||+|. .+..++..++||..||+.+.|+| -|-+++|++.|++-++|..+.......+.
T Consensus 457 ~sFsPd~r--fLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P--~GyYFatas~D~tArLWs~d~~~PlRifa 532 (707)
T KOG0263|consen 457 CSFSPDRR--FLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAP--RGYYFATASHDQTARLWSTDHNKPLRIFA 532 (707)
T ss_pred eeeccccc--ceeeccCCcceeeeecccceeEEEecCCCcceeeEEecC--CceEEEecCCCceeeeeecccCCchhhhc
Confidence 99999999 899999999999999 88889999999999999999987 57899999999999999999999999999
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
+|-..|.|+.|+|+..|+++|+. |.++++||..+|..++.|.||.+ +|.+++|+|+|++|++|++||.|.+||+.
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSs----D~tVRlWDv~~G~~VRiF~GH~~-~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~ 607 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSS----DRTVRLWDVSTGNSVRIFTGHKG-PVTALAFSPCGRYLASGDEDGLIKIWDLA 607 (707)
T ss_pred ccccccceEEECCcccccccCCC----CceEEEEEcCCCcEEEEecCCCC-ceEEEEEcCCCceEeecccCCcEEEEEcC
Confidence 99999999999999999999986 99999999999999999999988 89999999999999999999999999999
Q ss_pred CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+++++..+..| ...|.++.|+.+|..||+|+.|.+|++||+...
T Consensus 608 ~~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 608 NGSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CCcchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999998877 458999999999999999999999999998755
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-31 Score=248.57 Aligned_cols=291 Identities=14% Similarity=0.283 Sum_probs=237.4
Q ss_pred ccccCCccEEEEEEccC-CCEEEEEECCCeEEEEeecCCcccccceee-ecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~l-~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
.+.+|.+.|..++|+|- |..||+|+.|+.|++|+..++........+ .+|+..|++++|+|.|+ +|+++|.|.++.
T Consensus 9 ~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~--~La~aSFD~t~~ 86 (312)
T KOG0645|consen 9 KLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGR--YLASASFDATVV 86 (312)
T ss_pred eecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCc--EEEEeeccceEE
Confidence 48899999999999998 899999999999999999865443322223 38999999999999999 899999999999
Q ss_pred EEE-cC--CceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC---eeeeccCCCCceEEEEEccCCCE
Q 001319 479 VWE-LS--GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSADGSR 552 (1101)
Q Consensus 479 iwd-~~--~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~d~~~ 552 (1101)
||. .. -+++.++.||...|.+++|+. +|.+|++++.|+.|-+|.+.... +...+..|.+.|..+.|+|...+
T Consensus 87 Iw~k~~~efecv~~lEGHEnEVK~Vaws~--sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl 164 (312)
T KOG0645|consen 87 IWKKEDGEFECVATLEGHENEVKCVAWSA--SGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL 164 (312)
T ss_pred EeecCCCceeEEeeeeccccceeEEEEcC--CCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence 999 43 367899999999999999977 66899999999999999987543 44578889999999999999999
Q ss_pred EEEeecCCCCCceEEEEeCC---CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 553 LFSCGTSKDGDSFLVEWNES---EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
|++++. |++|++|.-. .-.+++++.+|.. .+.+++|++.|..+++++.|++++||...+. +. ..+.
T Consensus 165 L~S~SY----DnTIk~~~~~~dddW~c~~tl~g~~~-TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-----~~-~~~s 233 (312)
T KOG0645|consen 165 LFSCSY----DNTIKVYRDEDDDDWECVQTLDGHEN-TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-----LS-GMHS 233 (312)
T ss_pred eEEecc----CCeEEEEeecCCCCeeEEEEecCccc-eEEEEEecCCCceEEEecCCcceEeeeeccC-----cc-hhcc
Confidence 999997 9999999866 3468999999988 8999999999999999999999999986522 11 1223
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
..+..++|. ...|++++.|+.|+++.-.... ...... .+
T Consensus 234 r~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~------d~p~~~----------------l~----------------- 272 (312)
T KOG0645|consen 234 RALYDVPWD--NGVIASGGGDDAIRLFKESDSP------DEPSWN----------------LL----------------- 272 (312)
T ss_pred cceEeeeec--ccceEeccCCCEEEEEEecCCC------CCchHH----------------HH-----------------
Confidence 467889997 4589999999999998754320 000000 00
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecC-cccEEEeecCCeEEEEEec
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS-AVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~dg~v~~w~~~ 767 (1101)
......|...|+++++.|. ..+|++++.||.+++|.+.
T Consensus 273 --------------------~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 273 --------------------AKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred --------------------HhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 0001348889999999995 6789999999999999863
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-33 Score=275.30 Aligned_cols=284 Identities=15% Similarity=0.253 Sum_probs=248.7
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
-...|..+.|.|+|+.|++|+..|.+.+|+..+-.... .+..|..+|+++.|+++|. +++||+.+|.|++|+.+-
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEt---ilQaHDs~Vr~m~ws~~g~--wmiSgD~gG~iKyWqpnm 169 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFET---ILQAHDSPVRTMKWSHNGT--WMISGDKGGMIKYWQPNM 169 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHH---HhhhhcccceeEEEccCCC--EEEEcCCCceEEecccch
Confidence 34589999999999999999999999999985532111 4669999999999999999 899999999999999776
Q ss_pred ceeEEeecCC-cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 485 RKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 485 ~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
+.+..+.+|. ..|.+++|+|. ...+++++.||+|+|||....+....+.+|+-.|.++.|+|....+++++. |
T Consensus 170 nnVk~~~ahh~eaIRdlafSpn--DskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgsk----D 243 (464)
T KOG0284|consen 170 NNVKIIQAHHAEAIRDLAFSPN--DSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSK----D 243 (464)
T ss_pred hhhHHhhHhhhhhhheeccCCC--CceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccC----C
Confidence 7777777665 89999999984 368999999999999999999998889999999999999999999999985 7
Q ss_pred ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCC
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGN 642 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~ 642 (1101)
..|++||.+++.++.++.+|.+ .|..+.|++++++|++++.|..++++|+++.+.+.++..|.. .|+++.|+| ...
T Consensus 244 nlVKlWDprSg~cl~tlh~HKn-tVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkk--dv~~~~WhP~~~~ 320 (464)
T KOG0284|consen 244 NLVKLWDPRSGSCLATLHGHKN-TVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKK--DVTSLTWHPLNES 320 (464)
T ss_pred ceeEeecCCCcchhhhhhhccc-eEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchh--hheeecccccccc
Confidence 7999999999999999999988 899999999999999999999999999998888888877654 799999999 667
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
+|.+|+.||.|..|.+... +.+..+
T Consensus 321 lftsgg~Dgsvvh~~v~~~-~p~~~i------------------------------------------------------ 345 (464)
T KOG0284|consen 321 LFTSGGSDGSVVHWVVGLE-EPLGEI------------------------------------------------------ 345 (464)
T ss_pred ceeeccCCCceEEEecccc-ccccCC------------------------------------------------------
Confidence 8999999999999988632 111110
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
..+|...|.+++|+|-|..|++++.|.++++|.-.
T Consensus 346 ----------~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 346 ----------PPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred ----------CcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 04489999999999999999999999999999744
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-28 Score=260.37 Aligned_cols=503 Identities=14% Similarity=0.183 Sum_probs=358.0
Q ss_pred ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce-eEEeecCC-cCeEEEecccCCCccEEEEeccCCeEEEEecC
Q 001319 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK-LFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526 (1101)
Q Consensus 450 h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~-~~~~~~h~-~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~ 526 (1101)
-...|.++||+.+.+ .||.+-.||.|.+|+ ..+-. ...+.++. ..|.+++|.+ +..|++.+.+|.|.-||+.
T Consensus 24 ~Ps~I~slA~s~kS~--~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e---~~RLFS~g~sg~i~EwDl~ 98 (691)
T KOG2048|consen 24 KPSEIVSLAYSHKSN--QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE---GGRLFSSGLSGSITEWDLH 98 (691)
T ss_pred eccceEEEEEeccCC--ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc---CCeEEeecCCceEEEEecc
Confidence 345799999999998 699999999999999 44433 34555554 4799999973 4589999999999999999
Q ss_pred CCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC-cceEEEEEeCCCCEEEEEeC
Q 001319 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 527 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~ 605 (1101)
+.+....+...++.|.+++.+|.+..++.++. +|.+..++...++......-..+ ..+-+++|+|++..++.|+.
T Consensus 99 ~lk~~~~~d~~gg~IWsiai~p~~~~l~Igcd----dGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~ 174 (691)
T KOG2048|consen 99 TLKQKYNIDSNGGAIWSIAINPENTILAIGCD----DGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSI 174 (691)
T ss_pred cCceeEEecCCCcceeEEEeCCccceEEeecC----CceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEeccc
Confidence 99999999999999999999999999999985 77888888888877655433322 47889999999999999999
Q ss_pred CCcEEEEECCCCeeeEeec-----cCC-CCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCc
Q 001319 606 DSQIKFWDMDNVNILTSTD-----AEG-GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1101)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~-----~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
||.|++||..++..+.... ... ...-|+++.|-.++ .|++|...|+|.+||...+ ...+..
T Consensus 175 Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~g-TLiqS~----------- 241 (691)
T KOG2048|consen 175 DGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFG-TLIQSH----------- 241 (691)
T ss_pred CceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCc-chhhhh-----------
Confidence 9999999999988777322 111 22235566666454 7899999999999998877 222222
Q ss_pred ceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCC
Q 001319 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 759 (1101)
Q Consensus 680 v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 759 (1101)
..|...|.+++..++++++++++-|+
T Consensus 242 ------------------------------------------------------~~h~adVl~Lav~~~~d~vfsaGvd~ 267 (691)
T KOG2048|consen 242 ------------------------------------------------------SCHDADVLALAVADNEDRVFSAGVDP 267 (691)
T ss_pred ------------------------------------------------------hhhhcceeEEEEcCCCCeEEEccCCC
Confidence 23788899999999999999999999
Q ss_pred eEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEE
Q 001319 760 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM 838 (1101)
Q Consensus 760 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~ 838 (1101)
.+..+...+.... |... .....|...+.+++..++ .+++|+ |..+.+-.....+..
T Consensus 268 ~ii~~~~~~~~~~-------------wv~~--------~~r~~h~hdvrs~av~~~--~l~sgG~d~~l~i~~s~~~~~~ 324 (691)
T KOG2048|consen 268 KIIQYSLTTNKSE-------------WVIN--------SRRDLHAHDVRSMAVIEN--ALISGGRDFTLAICSSREFKNM 324 (691)
T ss_pred ceEEEEecCCccc-------------eeee--------ccccCCcccceeeeeecc--eEEecceeeEEEEccccccCch
Confidence 9888775543210 2111 111248889999999877 666666 777766544331111
Q ss_pred EEeeCCCCCeeE-EEEecCCCCEEEEEeCCCcEEEEEeecce---------EEEeeccCCCCeeEEEEcCCCCEEEEEeC
Q 001319 839 TTFMSPPPASTF-LAFHPQDNNIIAIGTEDSTIHIYNVRVDE---------VKSKLKGHQKRITGLAFSTSLNILVSSGA 908 (1101)
Q Consensus 839 ~~~~~~~~~i~~-l~~s~~~~~~la~g~~dg~v~iwd~~~~~---------~~~~~~~h~~~V~~l~~s~d~~~l~s~s~ 908 (1101)
.........-.+ +...| .++|..--.+..+.+|.+.+.. +.+....-...|.+.+.||+|++++.+.-
T Consensus 325 ~h~~~~~~p~~~~v~~a~--~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl~~k~~~nIs~~aiSPdg~~Ia~st~ 402 (691)
T KOG2048|consen 325 DHRQKNLFPASDRVSVAP--ENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKLFTKEKENISCAAISPDGNLIAISTV 402 (691)
T ss_pred hhhccccccccceeecCc--cceEEEEeccccccceeccCcccccccChhhheeeecCCccceeeeccCCCCCEEEEeec
Confidence 111000011111 22233 3344444456678888876541 12222233466999999999999987764
Q ss_pred CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE--eCCeEEEEEcCCcee--eeEeccCCCCCCCEE
Q 001319 909 DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMER--IRQWTPQDALSAPIS 984 (1101)
Q Consensus 909 Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~ 984 (1101)
..+++|.++....++...+....... ...+.+.|+-|+..++.. +...+.+++.++... +..+... .-...|.
T Consensus 403 -~~~~iy~L~~~~~vk~~~v~~~~~~~-~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~-~~~~~I~ 479 (691)
T KOG2048|consen 403 -SRTKIYRLQPDPNVKVINVDDVPLAL-LDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ-AKCPSIS 479 (691)
T ss_pred -cceEEEEeccCcceeEEEeccchhhh-ccceeeEEEecCceEEEEecccceeEEEEecCcchhhhhccccc-cCCCcce
Confidence 34788888764433222222111111 467788999888887774 467888888775543 2223222 2267899
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 985 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 985 ~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
.+..|+||+|||+.+.+|.|.+|++++++....... -...++.++|+|.....|+.+..|+.|.-+|+
T Consensus 480 ~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~~~l~~r------------ln~~vTa~~~~~~~~~~lvvats~nQv~efdi 547 (691)
T KOG2048|consen 480 RLVVSSDGNYIAAISTRGQIFVYNLETLESHLLKVR------------LNIDVTAAAFSPFVRNRLVVATSNNQVFEFDI 547 (691)
T ss_pred eEEEcCCCCEEEEEeccceEEEEEcccceeecchhc------------cCcceeeeeccccccCcEEEEecCCeEEEEec
Confidence 999999999999999999999999999877655421 12466789999878889999999999999999
Q ss_pred CCCC
Q 001319 1065 SESE 1068 (1101)
Q Consensus 1065 ~~~~ 1068 (1101)
...+
T Consensus 548 ~~~~ 551 (691)
T KOG2048|consen 548 EARN 551 (691)
T ss_pred chhh
Confidence 4433
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-32 Score=280.04 Aligned_cols=293 Identities=18% Similarity=0.285 Sum_probs=248.5
Q ss_pred CCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccCCccEE
Q 001319 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1101)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~ 410 (1101)
+|..++.++. |...|+++.|.|-.-+||++|+.|+.|+||++-. +.+++ ++.||..+|.
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lr-------------------tf~gH~k~Vr 262 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLR-------------------TFKGHRKPVR 262 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceeh-------------------hhhcchhhhh
Confidence 4667777766 9999999999994445899999999999999987 55554 5899999999
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
.++|+++|..+++++.|+.|++||+++|+++..+. -...++|+.|.||+.+ .+++|+.|+.|+.|| .+++.++.
T Consensus 263 d~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~----~~~~~~cvkf~pd~~n-~fl~G~sd~ki~~wDiRs~kvvqe 337 (503)
T KOG0282|consen 263 DASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFH----LDKVPTCVKFHPDNQN-IFLVGGSDKKIRQWDIRSGKVVQE 337 (503)
T ss_pred hhhccccCCeeeeeecceeeeeeccccceEEEEEe----cCCCceeeecCCCCCc-EEEEecCCCcEEEEeccchHHHHH
Confidence 99999999999999999999999999999876432 2446899999999955 899999999999999 99999999
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
+..|-+.|..+.|.+ +|..+++.+.|+++++|+.+..-..... ....+...++..+|++.+++.-+. ++.|.+
T Consensus 338 Yd~hLg~i~~i~F~~--~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~----dN~i~i 411 (503)
T KOG0282|consen 338 YDRHLGAILDITFVD--EGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSM----DNYIAI 411 (503)
T ss_pred HHhhhhheeeeEEcc--CCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhcc----CceEEE
Confidence 999999999999976 6789999999999999998877655433 333446789999999999998775 888999
Q ss_pred EeCCCC---eeEEEecccCCcc-eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC-CCE
Q 001319 569 WNESEG---TIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-GNL 643 (1101)
Q Consensus 569 wd~~~~---~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-g~~ 643 (1101)
+.+... ...+.|.||.-.. -..+.|+|||.+|++|..||.+.+||.++-+++..+..+.. .+..+.|+|. ...
T Consensus 412 fs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~--~ci~v~wHP~e~Sk 489 (503)
T KOG0282|consen 412 FSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQ--PCIGVDWHPVEPSK 489 (503)
T ss_pred EecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCc--ceEEEEecCCCcce
Confidence 886532 3445677776433 33489999999999999999999999999999999887744 7899999994 568
Q ss_pred EEEEEcCCcEEEEE
Q 001319 644 LAVTTADNGFKILA 657 (1101)
Q Consensus 644 l~~~~~d~~i~iwd 657 (1101)
+|+++-||.|++|+
T Consensus 490 vat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 490 VATCGWDGLIKIWD 503 (503)
T ss_pred eEecccCceeEecC
Confidence 99999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.98 E-value=5.5e-30 Score=278.99 Aligned_cols=282 Identities=26% Similarity=0.421 Sum_probs=249.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
+|.+.|++++|+|+++ ++++|+.||.|++|++.+++... .+..|...+..+.|+|++++|
T Consensus 7 ~h~~~i~~~~~~~~~~-~l~~~~~~g~i~i~~~~~~~~~~-------------------~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 7 GHTGGVTCVAFSPDGK-LLATGSGDGTIKVWDLETGELLR-------------------TLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred ccCCCEEEEEEcCCCC-EEEEeecCcEEEEEEeeCCCcEE-------------------EEecCCcceeEEEECCCCCEE
Confidence 5899999999999998 56888899999999998876433 266788899999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
++++.||.|++||+.+++.+. .+..|...|.++.|+++++ ++++++.|+.|++|| .+++.+..+..|...+.++
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~ 141 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVR---TLTGHTSYVSSVAFSPDGR--ILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSV 141 (289)
T ss_pred EEEcCCCeEEEEEcCcccceE---EEeccCCcEEEEEEcCCCC--EEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEE
Confidence 999999999999999876555 5778999999999999987 788888899999999 6688888999999999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
+|++. +.++++++.|+.|++||++..+....+..+...+.++.|+|+++.+++++. ++.|.+||..+++.+..+
T Consensus 142 ~~~~~--~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----~~~i~i~d~~~~~~~~~~ 215 (289)
T cd00200 142 AFSPD--GTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSS----DGTIKLWDLSTGKCLGTL 215 (289)
T ss_pred EEcCc--CCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecC----CCcEEEEECCCCceecch
Confidence 99874 578888888999999999988887777788888999999999999998875 889999999999998888
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
..+.. .+..++|+|++.++++++.||.|++|++.+++....+..+ ...|.+++|+|+++.+++++.|+.+++|+
T Consensus 216 ~~~~~-~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 216 RGHEN-GVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGH--TNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred hhcCC-ceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEcccc--CCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 77766 7889999999888888888999999999998888887744 34799999999999999999999999995
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.1e-30 Score=293.45 Aligned_cols=287 Identities=22% Similarity=0.376 Sum_probs=249.9
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--c
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~ 482 (1101)
|...|.++.|||||+++++++.|+.+++|+..+++. .....+.+|...|.+++|+||++ ++++++.|++|+||| .
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-~~~~~l~~h~~~v~~~~fs~d~~--~l~s~s~D~tiriwd~~~ 234 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-NLLRELSGHTRGVSDVAFSPDGS--YLLSGSDDKTLRIWDLKD 234 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-hhhccccccccceeeeEECCCCc--EEEEecCCceEEEeeccC
Confidence 478999999999999999999999999999977762 22225689999999999999999 899999999999999 4
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
.+.+++++++|...|++++|++ +|+++++|+.|++|++||+++++....+..|...|++++|+++++++++++.
T Consensus 235 ~~~~~~~l~gH~~~v~~~~f~p--~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~---- 308 (456)
T KOG0266|consen 235 DGRNLKTLKGHSTYVTSVAFSP--DGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASY---- 308 (456)
T ss_pred CCeEEEEecCCCCceEEEEecC--CCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCC----
Confidence 4588999999999999999988 4589999999999999999999999999999999999999999999999975
Q ss_pred CceEEEEeCCCCe--eEEEecccCCc-ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC-CCCCeeEEe
Q 001319 563 DSFLVEWNESEGT--IKRTYAGFRKK-SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFS 638 (1101)
Q Consensus 563 ~~~i~iwd~~~~~--~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s 638 (1101)
|+.|++||+.++. +...+.++... .+..++|+|++.++++++.|+.+++||+..+.....+..+... ..+.+...+
T Consensus 309 d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~ 388 (456)
T KOG0266|consen 309 DGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLS 388 (456)
T ss_pred CccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEeccccc
Confidence 9999999999999 67888888775 6899999999999999999999999999999998888776543 234455567
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
+.+.++++|+.|+.|.+|+..++ ..+..+.+
T Consensus 389 ~~~~~i~sg~~d~~v~~~~~~s~-~~~~~l~~------------------------------------------------ 419 (456)
T KOG0266|consen 389 TGGKLIYSGSEDGSVYVWDSSSG-GILQRLEG------------------------------------------------ 419 (456)
T ss_pred CCCCeEEEEeCCceEEEEeCCcc-chhhhhcC------------------------------------------------
Confidence 79999999999999999999875 33333332
Q ss_pred EEeCCCeEEEEcCCCCCC-cccEEEEEeecCcccEEEee--cCCeEEEEEe
Q 001319 719 IVDSGQCRLVTMPESTDT-SSKVVRLLYTNSAVGLLALG--SNGVQKLWKW 766 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~-~~~i~~~~~s~~~~~l~~~~--~dg~v~~w~~ 766 (1101)
| ...+..+.+++....+++.+ .|+.+++|..
T Consensus 420 -----------------h~~~~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~ 453 (456)
T KOG0266|consen 420 -----------------HSKAAVSDLSSHPTENLIASSSFEGDGLIRLWKY 453 (456)
T ss_pred -----------------CCCCceeccccCCCcCeeeecCcCCCceEEEecC
Confidence 4 56667788888888888887 6888999964
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=272.41 Aligned_cols=292 Identities=17% Similarity=0.309 Sum_probs=247.6
Q ss_pred ceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeE
Q 001319 444 HSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKI 520 (1101)
Q Consensus 444 ~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i 520 (1101)
...+.||+..|+++.|.| .+. +|++++.|+.|+||+ ..+++++++.+|..+|..++|+. +|..+++++.|+.|
T Consensus 207 ~~~~~gH~kgvsai~~fp~~~h--LlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~--~g~~fLS~sfD~~l 282 (503)
T KOG0282|consen 207 SHNLSGHTKGVSAIQWFPKKGH--LLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNN--CGTSFLSASFDRFL 282 (503)
T ss_pred eeeccCCccccchhhhccceee--EEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccc--cCCeeeeeecceee
Confidence 346889999999999999 566 899999999999999 56999999999999999999976 67899999999999
Q ss_pred EEEecCCCCeeeeccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCE
Q 001319 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1101)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1101)
++||.+++.+...+.. +..++++.|.||+ +.+++|+. ++.|+.||+++++.++.+..|-+ .+..+.|-++|.+
T Consensus 283 KlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~s----d~ki~~wDiRs~kvvqeYd~hLg-~i~~i~F~~~g~r 356 (503)
T KOG0282|consen 283 KLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGS----DKKIRQWDIRSGKVVQEYDRHLG-AILDITFVDEGRR 356 (503)
T ss_pred eeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecC----CCcEEEEeccchHHHHHHHhhhh-heeeeEEccCCce
Confidence 9999999999887763 4468999999999 66666665 89999999999999999988877 8999999999999
Q ss_pred EEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCc
Q 001319 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTP 679 (1101)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 679 (1101)
+++.++|+.++||+......+..+.... .-...++..+|++.+++.-+.|+.|.++.+....+.-+ ...
T Consensus 357 FissSDdks~riWe~~~~v~ik~i~~~~-~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nk---kK~------- 425 (503)
T KOG0282|consen 357 FISSSDDKSVRIWENRIPVPIKNIADPE-MHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNK---KKR------- 425 (503)
T ss_pred EeeeccCccEEEEEcCCCccchhhcchh-hccCcceecCCCCCeehhhccCceEEEEecccccccCH---hhh-------
Confidence 9999999999999998877666553332 23678999999999999999999999987653311000 000
Q ss_pred ceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCC
Q 001319 680 IESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG 759 (1101)
Q Consensus 680 v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg 759 (1101)
T Consensus 426 -------------------------------------------------------------------------------- 425 (503)
T KOG0282|consen 426 -------------------------------------------------------------------------------- 425 (503)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEE
Q 001319 760 VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM 838 (1101)
Q Consensus 760 ~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~ 838 (1101)
+.++.-.+.-..+.|||||.+|++|+ +|.+.+||.++.+.+
T Consensus 426 --------------------------------------feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~ 467 (503)
T KOG0282|consen 426 --------------------------------------FEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV 467 (503)
T ss_pred --------------------------------------hcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence 00000223345689999999999998 999999999999999
Q ss_pred EEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 839 TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 839 ~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
..+++|...+..+.|+|.....+|+++.||.|++|+
T Consensus 468 ~~lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 468 SKLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred hccccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999998889999999999999996
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.98 E-value=1.4e-31 Score=259.57 Aligned_cols=280 Identities=15% Similarity=0.293 Sum_probs=233.9
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
...|+|+.+ |...+++|..|++|+|||.++-.+++ .+.||++.|.|+.|. .+ ++++|+.|.+|+||| .+|
T Consensus 197 skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~---~L~GHtGSVLCLqyd--~r--viisGSSDsTvrvWDv~tg 267 (499)
T KOG0281|consen 197 SKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLK---ILTGHTGSVLCLQYD--ER--VIVSGSSDSTVRVWDVNTG 267 (499)
T ss_pred CCceEEEEe--cchhhhcccccCceEEeccccHHHHH---hhhcCCCcEEeeecc--ce--EEEecCCCceEEEEeccCC
Confidence 347899988 56789999999999999999988777 688999999999994 55 899999999999999 999
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee---eeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
+++.++.+|...|..+.|+. .++++++.|.++.+||+...... ..+.+|...|+.+.|+ .+++++++.
T Consensus 268 e~l~tlihHceaVLhlrf~n----g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASg--- 338 (499)
T KOG0281|consen 268 EPLNTLIHHCEAVLHLRFSN----GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASG--- 338 (499)
T ss_pred chhhHHhhhcceeEEEEEeC----CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecC---
Confidence 99999999999999999853 58999999999999999877643 4677888899999885 459999874
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
|.+|++|++.+++.++++.+|.. .+.++.+. ++++++|+.|.+|++||+..|.++..+++|.. -|.++.| |.
T Consensus 339 -DRTikvW~~st~efvRtl~gHkR-GIAClQYr--~rlvVSGSSDntIRlwdi~~G~cLRvLeGHEe--LvRciRF--d~ 410 (499)
T KOG0281|consen 339 -DRTIKVWSTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LVRCIRF--DN 410 (499)
T ss_pred -CceEEEEeccceeeehhhhcccc-cceehhcc--CeEEEecCCCceEEEEeccccHHHHHHhchHH--hhhheee--cC
Confidence 99999999999999999999987 67777664 78999999999999999999999999988765 7999999 67
Q ss_pred CEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 642 NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
+.+++|..||+|++||+..+...-. ...
T Consensus 411 krIVSGaYDGkikvWdl~aaldpra-~~~--------------------------------------------------- 438 (499)
T KOG0281|consen 411 KRIVSGAYDGKIKVWDLQAALDPRA-PAS--------------------------------------------------- 438 (499)
T ss_pred ceeeeccccceEEEEecccccCCcc-ccc---------------------------------------------------
Confidence 7999999999999999987632110 000
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 770 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~ 770 (1101)
.+.+.....|.+.|..+.|. ..++++++.|.+|.+||+....
T Consensus 439 -----~~Cl~~lv~hsgRVFrLQFD--~fqIvsssHddtILiWdFl~~~ 480 (499)
T KOG0281|consen 439 -----TLCLRTLVEHSGRVFRLQFD--EFQIISSSHDDTILIWDFLNGP 480 (499)
T ss_pred -----chHHHhhhhccceeEEEeec--ceEEEeccCCCeEEEEEcCCCC
Confidence 00000113377888888885 4559999999999999987543
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.7e-30 Score=266.56 Aligned_cols=619 Identities=18% Similarity=0.236 Sum_probs=352.3
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
.+-.|++.|+.+.|||-...|||+|+.|..|+||.+..|-... ..-+...+.+..-.|-++.|+|..
T Consensus 74 ~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~-------------LSape~~~g~~~~~vE~l~fHpTa 140 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQK-------------LSAPEIDVGGGNVIVECLRFHPTA 140 (1012)
T ss_pred eeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccc-------------cCCcceeecCCceEEEEeecccCc
Confidence 3445999999999999887799999999999999998543221 001222355566789999999977
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~ 496 (1101)
.-|...+..|+++|||+.+++.+. ++.+|.+.|.++.|+.||+ +|++.+.|+.|+||| ..++.++...+|.+.
T Consensus 141 Dgil~s~a~g~v~i~D~stqk~~~---el~~h~d~vQSa~WseDG~--llatscKdkqirifDPRa~~~piQ~te~H~~~ 215 (1012)
T KOG1445|consen 141 DGILASGAHGSVYITDISTQKTAV---ELSGHTDKVQSADWSEDGK--LLATSCKDKQIRIFDPRASMEPIQTTEGHGGM 215 (1012)
T ss_pred CceEEeccCceEEEEEcccCceee---cccCCchhhhccccccCCc--eEeeecCCcceEEeCCccCCCccccccccccc
Confidence 767777788999999999998766 7889999999999999999 899999999999999 788889998999874
Q ss_pred -eEEEecccCCCccEEEEeccC----CeEEEEecCCCCee---eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 497 -VYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 497 -v~~v~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
-..+.|.. +-..|++.+.+ ..|++||.+..... .++.... .|.---|.||.++++.++. |+..+..
T Consensus 216 rdsRv~w~G--n~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGK---G~~~l~~ 289 (1012)
T KOG1445|consen 216 RDSRVLWAG--NWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGK---GTNKLFM 289 (1012)
T ss_pred hhheeeecc--chhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecC---CcceEEE
Confidence 23455533 43567777655 56899998764332 2332222 3555668899999998875 6778888
Q ss_pred EeCCCCeeEE--EecccCCcceEEEEEeCCCCEEEEEeC-CCcE------------------------------------
Q 001319 569 WNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQI------------------------------------ 609 (1101)
Q Consensus 569 wd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i------------------------------------ 609 (1101)
+.+...+... .+...-.......++.|....-+..++ +..+
T Consensus 290 lE~~d~qPyLs~v~~~tle~~~~GA~lvpkral~VM~~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 290 LEMQDRQPYLSHVFELTLEEQTLGATLVPKRALHVMDGEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred EEecCCCcchhhhhhhcchhhhccceecchhhhhhcchhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 8776543211 110000000000111111000000000 0000
Q ss_pred ---EEEECCCCeeeEeec------cCC----------------CCCCCCeeEEecCCCEEEEEEcCC-------------
Q 001319 610 ---KFWDMDNVNILTSTD------AEG----------------GLPNLPRLRFSKEGNLLAVTTADN------------- 651 (1101)
Q Consensus 610 ---~iwd~~~~~~~~~~~------~~~----------------~~~~v~~v~~s~~g~~l~~~~~d~------------- 651 (1101)
--|=-.+.+.+.... .|+ ...+|......|...-=.....|.
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK 449 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence 001000111111000 000 000000000011000000000000
Q ss_pred -cEEEEEccccccccccccCC----CcccccCcceee------eeeecccccccc------CCCCCc-cee---------
Q 001319 652 -GFKILANAIGLRSLRAVENP----PFEALRTPIESV------ALKVSASSAVSS------GTPANC-KVE--------- 704 (1101)
Q Consensus 652 -~i~iwd~~~~~~~~~~~~~~----~~~~~~~~v~~~------~~s~~~~~l~~~------~~~~~~-~~~--------- 704 (1101)
.++-.+........-.-.+. ......+++..+ ...|...-+... ...... .+-
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~ 529 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGK 529 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCC
Confidence 00000000000000000000 000000000000 000100000000 000000 000
Q ss_pred ------c---cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc-cEE------------EEEeecCcccEE--EeecCCe
Q 001319 705 ------R---SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS-KVV------------RLLYTNSAVGLL--ALGSNGV 760 (1101)
Q Consensus 705 ------~---~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~i~------------~~~~s~~~~~l~--~~~~dg~ 760 (1101)
+ ...+......+-.+ .+.+.+ .+..+|.. .|. +-.|+.+..+++ -.+..|.
T Consensus 530 ~~sat~~v~~s~s~r~~s~v~G~i---SKFRH~--~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~ 604 (1012)
T KOG1445|consen 530 PISATNRVPLSQSVRPKSCVVGQI---SKFRHV--DGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGV 604 (1012)
T ss_pred Cccccccccccccccccceeeccc---hheeec--cCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCce
Confidence 0 00000000000000 000000 00011111 010 011222333333 3455789
Q ss_pred EEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-CCCeEEEEc-CCeEEEEECCCc---
Q 001319 761 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTF--- 835 (1101)
Q Consensus 761 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~--- 835 (1101)
|.||++......++|... +......|+.+.|.| |...||++. ||.|++|.+..+
T Consensus 605 iai~el~~PGrLPDgv~p---------------------~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~ 663 (1012)
T KOG1445|consen 605 IAIYELNEPGRLPDGVMP---------------------GLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLP 663 (1012)
T ss_pred EEEEEcCCCCCCCccccc---------------------ccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCC
Confidence 999998876655554332 222567789999999 667788776 899999998643
Q ss_pred ----eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCc
Q 001319 836 ----KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 911 (1101)
Q Consensus 836 ----~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~ 911 (1101)
.....+..|...|+++.|+|-....|++++.|-+|++||+.+++....+.+|.+.|.+++|||||+.+|+.+.||+
T Consensus 664 e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~ 743 (1012)
T KOG1445|consen 664 ENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGT 743 (1012)
T ss_pred cccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCce
Confidence 3456678899999999999977789999999999999999999999999999999999999999999999999999
Q ss_pred EEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-E----eCCeEEEEEcCCce--eeeEeccCCCCCCCEE
Q 001319 912 LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V----HETQLAIYDASKME--RIRQWTPQDALSAPIS 984 (1101)
Q Consensus 912 v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~----~d~~i~v~d~~~~~--~~~~~~~~~~h~~~v~ 984 (1101)
|++|+-.+++.. +..-.+.....-..+.|--||+++++ | +.++|.+||..+.. .+....... .-.+.
T Consensus 744 ~rVy~Prs~e~p----v~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDv--aps~L 817 (1012)
T KOG1445|consen 744 LRVYEPRSREQP----VYEGKGPVGTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDV--APSPL 817 (1012)
T ss_pred EEEeCCCCCCCc----cccCCCCccCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeeecc--cCccc
Confidence 999999886642 22222322245567889999999888 3 25679999987654 222211110 22233
Q ss_pred EEEEccCCCE-EEEEeCCCcEEEEeCCCCc
Q 001319 985 CAVYSCNSQL-VFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 985 ~v~~s~dg~~-l~s~~~dg~i~vwd~~~~~ 1013 (1101)
--.+.+|... +++|-.|..|..|.+-.-+
T Consensus 818 vP~YD~Ds~~lfltGKGD~~v~~yEv~~es 847 (1012)
T KOG1445|consen 818 VPHYDYDSNVLFLTGKGDRFVNMYEVIYES 847 (1012)
T ss_pred cccccCCCceEEEecCCCceEEEEEecCCC
Confidence 3345566654 5678899999999986543
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=245.23 Aligned_cols=287 Identities=19% Similarity=0.269 Sum_probs=252.6
Q ss_pred eEeecCCCcEEEEEEec---CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 338 AVSLHQGSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fsp---dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
...-+|+.+|-.++||| +| |+|+++++|+.-.+-+=++|.-+- ++.||.+.|++...
T Consensus 8 l~c~ghtrpvvdl~~s~itp~g-~flisa~kd~~pmlr~g~tgdwig-------------------tfeghkgavw~~~l 67 (334)
T KOG0278|consen 8 LTCHGHTRPVVDLAFSPITPDG-YFLISASKDGKPMLRNGDTGDWIG-------------------TFEGHKGAVWSATL 67 (334)
T ss_pred eEEcCCCcceeEEeccCCCCCc-eEEEEeccCCCchhccCCCCCcEE-------------------eeeccCcceeeeec
Confidence 34457999999999986 66 688999999999988888888776 49999999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeec
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEG 492 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~ 492 (1101)
..+...-|+++.|-+.+|||.-+|..+.. + .|..-|.+++|+.|.+ +|++|+.++.++||| ....+...+.+
T Consensus 68 ~~na~~aasaaadftakvw~a~tgdelhs---f-~hkhivk~~af~~ds~--~lltgg~ekllrvfdln~p~App~E~~g 141 (334)
T KOG0278|consen 68 NKNATRAASAAADFTAKVWDAVTGDELHS---F-EHKHIVKAVAFSQDSN--YLLTGGQEKLLRVFDLNRPKAPPKEISG 141 (334)
T ss_pred Cchhhhhhhhcccchhhhhhhhhhhhhhh---h-hhhheeeeEEecccch--hhhccchHHHhhhhhccCCCCCchhhcC
Confidence 99999999999999999999999988773 3 5888999999999999 799999999999999 44556788999
Q ss_pred CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC
Q 001319 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 493 h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
|.+.|..+.|.... +.+++++.|++||+||.+++.....+.. ..+|+++.++++|+++.++- .+.|.+||..
T Consensus 142 htg~Ir~v~wc~eD--~~iLSSadd~tVRLWD~rTgt~v~sL~~-~s~VtSlEvs~dG~ilTia~-----gssV~Fwdak 213 (334)
T KOG0278|consen 142 HTGGIRTVLWCHED--KCILSSADDKTVRLWDHRTGTEVQSLEF-NSPVTSLEVSQDGRILTIAY-----GSSVKFWDAK 213 (334)
T ss_pred CCCcceeEEEeccC--ceEEeeccCCceEEEEeccCcEEEEEec-CCCCcceeeccCCCEEEEec-----CceeEEeccc
Confidence 99999999997643 6788889999999999999998887764 45699999999999988774 5679999999
Q ss_pred CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
+..+++.+.... .|.+.+.+|+...+++|++|..++.||..+++.+..+ ..++.++|.|+.|+|+|...++|+.||+
T Consensus 214 sf~~lKs~k~P~--nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkgh~gpVhcVrFSPdGE~yAsGSEDGT 290 (334)
T KOG0278|consen 214 SFGLLKSYKMPC--NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKGHFGPVHCVRFSPDGELYASGSEDGT 290 (334)
T ss_pred cccceeeccCcc--ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccCCCCceEEEEECCCCceeeccCCCce
Confidence 999998887654 4888899999999999999999999999999988885 3455679999999999999999999999
Q ss_pred EEEEEcccc
Q 001319 653 FKILANAIG 661 (1101)
Q Consensus 653 i~iwd~~~~ 661 (1101)
|++|....+
T Consensus 291 irlWQt~~~ 299 (334)
T KOG0278|consen 291 IRLWQTTPG 299 (334)
T ss_pred EEEEEecCC
Confidence 999998765
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=306.31 Aligned_cols=292 Identities=14% Similarity=0.184 Sum_probs=236.1
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~ 419 (1101)
..|.+.|++++|+|+|+ ++|+|+.|+.|+||++.+...... . ...+...+. +...|.+++|+| ++.
T Consensus 480 ~~~~~~V~~i~fs~dg~-~latgg~D~~I~iwd~~~~~~~~~-~----------~~~~~~~~~-~~~~v~~l~~~~~~~~ 546 (793)
T PLN00181 480 LNSSNLVCAIGFDRDGE-FFATAGVNKKIKIFECESIIKDGR-D----------IHYPVVELA-SRSKLSGICWNSYIKS 546 (793)
T ss_pred cCCCCcEEEEEECCCCC-EEEEEeCCCEEEEEECCccccccc-c----------cccceEEec-ccCceeeEEeccCCCC
Confidence 34899999999999998 568999999999999764211000 0 000001122 346899999988 578
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
+||+++.||+|++||+.+++.+. .+.+|.+.|++++|+| ++. +|++|+.|++|++|| .++..+..+..+ ..|
T Consensus 547 ~las~~~Dg~v~lWd~~~~~~~~---~~~~H~~~V~~l~~~p~~~~--~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~-~~v 620 (793)
T PLN00181 547 QVASSNFEGVVQVWDVARSQLVT---EMKEHEKRVWSIDYSSADPT--LLASGSDDGSVKLWSINQGVSIGTIKTK-ANI 620 (793)
T ss_pred EEEEEeCCCeEEEEECCCCeEEE---EecCCCCCEEEEEEcCCCCC--EEEEEcCCCEEEEEECCCCcEEEEEecC-CCe
Confidence 99999999999999999887665 6789999999999997 667 899999999999999 788888888755 578
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCC-eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC---
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--- 573 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--- 573 (1101)
.++.|.+ +++.++++|+.||.|++||++... ....+..|...|.++.|. ++.++++++. |+.|++||+..
T Consensus 621 ~~v~~~~-~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~----D~~ikiWd~~~~~~ 694 (793)
T PLN00181 621 CCVQFPS-ESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSST----DNTLKLWDLSMSIS 694 (793)
T ss_pred EEEEEeC-CCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEEC----CCEEEEEeCCCCcc
Confidence 9999854 357899999999999999998765 355667888899999997 7888999885 89999999874
Q ss_pred ---CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec-----------cCCCCCCCCeeEEec
Q 001319 574 ---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-----------AEGGLPNLPRLRFSK 639 (1101)
Q Consensus 574 ---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-----------~~~~~~~v~~v~~s~ 639 (1101)
...+..+.+|.. .+..++|++++++|++|+.|+.|++|+......+..+. ...+...|.+++|+|
T Consensus 695 ~~~~~~l~~~~gh~~-~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~v~ws~ 773 (793)
T PLN00181 695 GINETPLHSFMGHTN-VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQFISSVCWRG 773 (793)
T ss_pred ccCCcceEEEcCCCC-CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCcEEEEEEEcC
Confidence 356788888876 78889999999999999999999999987654433221 112234589999999
Q ss_pred CCCEEEEEEcCCcEEEEEc
Q 001319 640 EGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~ 658 (1101)
++..|++|+.+|.|++|++
T Consensus 774 ~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 774 QSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCCeEEEecCCCcEEEEec
Confidence 9999999999999999986
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=233.34 Aligned_cols=247 Identities=19% Similarity=0.256 Sum_probs=220.4
Q ss_pred ccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 399 ~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
.+++.+|+++|.++.|+-||+|.++|+.|.+|++|+...|.+++ ++.+|...|..++.+.|+. .+++|+.|+.|.
T Consensus 10 ~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~lik---tYsghG~EVlD~~~s~Dns--kf~s~GgDk~v~ 84 (307)
T KOG0316|consen 10 LSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIK---TYSGHGHEVLDAALSSDNS--KFASCGGDKAVQ 84 (307)
T ss_pred ceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceee---eecCCCceeeecccccccc--ccccCCCCceEE
Confidence 34688999999999999999999999999999999999999888 7889999999999999998 699999999999
Q ss_pred EEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC--CeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 479 iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+|| .+|+.++.|.+|.+.|+.+.|+. +...+++|+.|.++++||-++. +++..+......|.++..+ +..+++
T Consensus 85 vwDV~TGkv~Rr~rgH~aqVNtV~fNe--esSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~--~heIva 160 (307)
T KOG0316|consen 85 VWDVNTGKVDRRFRGHLAQVNTVRFNE--ESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA--EHEIVA 160 (307)
T ss_pred EEEcccCeeeeecccccceeeEEEecC--cceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEec--ccEEEe
Confidence 999 99999999999999999999976 4579999999999999998764 4455566666678888775 456777
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
|+. ||+++.||++.|+....+-++ +|++++|+++++..++++.|+++++.|-.+|+++..+.++.....-...
T Consensus 161 GS~----DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc 233 (307)
T KOG0316|consen 161 GSV----DGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDC 233 (307)
T ss_pred ecc----CCcEEEEEeecceeehhhcCC---cceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeee
Confidence 775 999999999999988777765 7999999999999999999999999999999999999888765555667
Q ss_pred EEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+++.....+++|+.||.|.+||+.+.
T Consensus 234 ~l~qsdthV~sgSEDG~Vy~wdLvd~ 259 (307)
T KOG0316|consen 234 CLNQSDTHVFSGSEDGKVYFWDLVDE 259 (307)
T ss_pred eecccceeEEeccCCceEEEEEeccc
Confidence 78888889999999999999999876
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-30 Score=250.87 Aligned_cols=292 Identities=19% Similarity=0.274 Sum_probs=244.2
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
....+.+..|+|||.++++++-||.+.+|++..++...+-+..+ ... .+ -+..+|.|+.||.|
T Consensus 212 ~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQA---------qd~-fM-------Mmd~aVlci~FSRD 274 (508)
T KOG0275|consen 212 QKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQA---------QDN-FM-------MMDDAVLCISFSRD 274 (508)
T ss_pred cccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhh---------hcc-ee-------ecccceEEEeeccc
Confidence 45677889999999999999999999999987654322221111 111 11 17889999999999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEEEee-CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeE
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 893 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 893 (1101)
...+|+|+ ||+|++|.+.+|.+++.|. .|...|+|+.||. |+..+.+++.|.+++|--+.+|+++.+++||++-|+.
T Consensus 275 sEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSr-D~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~ 353 (508)
T KOG0275|consen 275 SEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSR-DNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNE 353 (508)
T ss_pred HHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEcc-CcchhhcccccceEEEeccccchhHHHhcCccccccc
Confidence 99999999 9999999999999999997 7999999999999 8888889999999999999999999999999999999
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCC-CEEEEE-eCCeEEEEEcCCceeee
Q 001319 894 LAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ-VRMLVV-HETQLAIYDASKMERIR 971 (1101)
Q Consensus 894 l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~-~d~~i~v~d~~~~~~~~ 971 (1101)
..|++||.++++++.||+|++|+..+.++..++.... ....+..+..-|.+ ..++++ ..+++.|.++. |+.++
T Consensus 354 a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~----~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-GQvVr 428 (508)
T KOG0275|consen 354 ATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLG----TDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-GQVVR 428 (508)
T ss_pred eEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCC----CcccceeEEEcCCCCceEEEEcCCCeEEEEecc-ceEEe
Confidence 9999999999999999999999999999877653321 22567777666643 445544 47888888886 77788
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
.+.......+...+.+.||.|.|+.+.++|+.++-|.+.+|.+-..+.. |.. -+++++-+| ..++|+
T Consensus 429 sfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~V----------hEk--dvIGl~HHP-HqNllA 495 (508)
T KOG0275|consen 429 SFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPV----------HEK--DVIGLTHHP-HQNLLA 495 (508)
T ss_pred eeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeec----------ccc--cccccccCc-ccchhh
Confidence 8876655577788889999999999999999999999999999888763 333 456899999 499999
Q ss_pred EEECCCeEEEEe
Q 001319 1052 IGLTDGSVKVME 1063 (1101)
Q Consensus 1052 s~~~Dg~v~iWd 1063 (1101)
+-++||.+++|.
T Consensus 496 sYsEDgllKLWk 507 (508)
T KOG0275|consen 496 SYSEDGLLKLWK 507 (508)
T ss_pred hhcccchhhhcC
Confidence 999999999996
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=267.97 Aligned_cols=285 Identities=22% Similarity=0.400 Sum_probs=247.9
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|..+|.+++|+|++++|++++.||.|++|++.+++... .+..|...+..+.|+++++ .+++++.|+.|++|
T Consensus 4 ~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~--~l~~~~~~~~i~i~ 78 (289)
T cd00200 4 TLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLR---TLKGHTGPVRDVAASADGT--YLASGSSDKTIRLW 78 (289)
T ss_pred HhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEE---EEecCCcceeEEEECCCCC--EEEEEcCCCeEEEE
Confidence 367899999999999999999999999999999999876444 5778999999999999998 79999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .+++.+..+..|...+.++.|++. +.++++++.|+.|++||+.+.+....+..+...+.+++|+|++.++++++.
T Consensus 79 ~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~- 155 (289)
T cd00200 79 DLETGECVRTLTGHTSYVSSVAFSPD--GRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQ- 155 (289)
T ss_pred EcCcccceEEEeccCCcEEEEEEcCC--CCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcC-
Confidence 9 777888889999999999999874 578888888999999999988888888878888999999999999888764
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
++.|.+||+.+++....+..+.. .+.++.|+|+++.+++++.++.|++||+..++.+..+..+. ..+.++.|+|
T Consensus 156 ---~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~--~~i~~~~~~~ 229 (289)
T cd00200 156 ---DGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHE--NGVNSVAFSP 229 (289)
T ss_pred ---CCcEEEEEccccccceeEecCcc-ccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcC--CceEEEEEcC
Confidence 78999999999998888887765 78999999999999999999999999999988887775443 3789999999
Q ss_pred CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEE
Q 001319 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEI 719 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 719 (1101)
++.++++++.++.+++|+..++ .....+
T Consensus 230 ~~~~~~~~~~~~~i~i~~~~~~-~~~~~~--------------------------------------------------- 257 (289)
T cd00200 230 DGYLLASGSEDGTIRVWDLRTG-ECVQTL--------------------------------------------------- 257 (289)
T ss_pred CCcEEEEEcCCCcEEEEEcCCc-eeEEEc---------------------------------------------------
Confidence 9888888888999999998754 111111
Q ss_pred EeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 720 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
..|...|.++.|++++..+++++.||.+++|+
T Consensus 258 --------------~~~~~~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 258 --------------SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred --------------cccCCcEEEEEECCCCCEEEEecCCCeEEecC
Confidence 12566789999999999999999999999995
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.8e-28 Score=221.76 Aligned_cols=310 Identities=18% Similarity=0.221 Sum_probs=240.6
Q ss_pred ceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
..+.++..+..|.+|+|+|.|. |.|+|+...+++|-.+..-..++.. .+.....+.+..+.-+.|.+.|.|.+||
T Consensus 24 ~~i~~l~dsqairav~fhp~g~-lyavgsnskt~ric~yp~l~~~r~~----hea~~~pp~v~~kr~khhkgsiyc~~ws 98 (350)
T KOG0641|consen 24 EAINILEDSQAIRAVAFHPAGG-LYAVGSNSKTFRICAYPALIDLRHA----HEAAKQPPSVLCKRNKHHKGSIYCTAWS 98 (350)
T ss_pred EEEEEecchhheeeEEecCCCc-eEEeccCCceEEEEccccccCcccc----cccccCCCeEEeeeccccCccEEEEEec
Confidence 4556677788999999999998 7799999999998765432221100 0000000112223456799999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecC--CcccccceeeecccCcEEEEEEecC---CCceEEEEec-CCceEEEEE-cCCceeE
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG-DDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~--~~~~~~~~~l~~h~~~V~~l~~s~d---~~~~~l~s~~-~d~~v~iwd-~~~~~~~ 488 (1101)
|+|++||+|++|.+|++.-.+. ......-.++.-|.+.|..++|..+ +.. +|++++ .|..|++-| .+|+..+
T Consensus 99 ~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~-il~s~gagdc~iy~tdc~~g~~~~ 177 (350)
T KOG0641|consen 99 PCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGA-ILASAGAGDCKIYITDCGRGQGFH 177 (350)
T ss_pred CccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCce-EEEecCCCcceEEEeecCCCCcce
Confidence 9999999999999999876653 3333344468889999999999765 233 566654 577888889 9999999
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC-------CCceEEEEEccCCCEEEEeecCCC
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
.+.||++.|.++- +. +|.++++|+.|.+||+||++-..+..++... ...|.+++..|.|++|+++..
T Consensus 178 a~sghtghilaly-sw--n~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~--- 251 (350)
T KOG0641|consen 178 ALSGHTGHILALY-SW--NGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHA--- 251 (350)
T ss_pred eecCCcccEEEEE-Ee--cCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccC---
Confidence 9999999998874 22 5679999999999999999888777654321 247899999999999999975
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC--eeeEeeccCCCCCCCCeeEEec
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
|....+||++.++.++.|..|.. .+.++.|+|...++++++.|..|++-|+... ..+...-...+...+..+.|+|
T Consensus 252 -dssc~lydirg~r~iq~f~phsa-dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~ 329 (350)
T KOG0641|consen 252 -DSSCMLYDIRGGRMIQRFHPHSA-DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHP 329 (350)
T ss_pred -CCceEEEEeeCCceeeeeCCCcc-ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecC
Confidence 88899999999999999999987 8999999999999999999999999998642 1111111223344678899999
Q ss_pred CCCEEEEEEcCCcEEEEEcc
Q 001319 640 EGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~~ 659 (1101)
..-.+++.+.|.++.+|.+.
T Consensus 330 ~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 330 QDFSFISSSADKTATLWALN 349 (350)
T ss_pred ccceeeeccCcceEEEeccC
Confidence 99999999999999999753
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.4e-30 Score=238.42 Aligned_cols=256 Identities=17% Similarity=0.248 Sum_probs=225.0
Q ss_pred CCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce-
Q 001319 802 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE- 879 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~- 879 (1101)
+|.+.|++.++..+....|+++ |=+-++||.-+|..+..+. |..-|.+++|+. |.++|++|+.+.-++|||++..+
T Consensus 57 ghkgavw~~~l~~na~~aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~-ds~~lltgg~ekllrvfdln~p~A 134 (334)
T KOG0278|consen 57 GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQ-DSNYLLTGGQEKLLRVFDLNRPKA 134 (334)
T ss_pred ccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecc-cchhhhccchHHHhhhhhccCCCC
Confidence 3888888888888888888887 7789999999999998886 788899999999 89999999999999999998653
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeE
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 959 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 959 (1101)
+..++.+|.+.|..+-|....+.++|++.|++||+||..++...+..... ..++++-+++||++|.++..+.|
T Consensus 135 pp~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~-------s~VtSlEvs~dG~ilTia~gssV 207 (334)
T KOG0278|consen 135 PPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFN-------SPVTSLEVSQDGRILTIAYGSSV 207 (334)
T ss_pred CchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecC-------CCCcceeeccCCCEEEEecCcee
Confidence 46788999999999999998899999999999999999999887776655 78999999999999999999999
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEE
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1039 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 1039 (1101)
.+||..+...+..+.. ...|.+..++|+...+++|++|+.++.||+.+|+.+.... .+|.. .+.+
T Consensus 208 ~Fwdaksf~~lKs~k~----P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~n---------kgh~g--pVhc 272 (334)
T KOG0278|consen 208 KFWDAKSFGLLKSYKM----PCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYN---------KGHFG--PVHC 272 (334)
T ss_pred EEeccccccceeeccC----ccccccccccCCCceEEecCcceEEEEEeccCCceeeecc---------cCCCC--ceEE
Confidence 9999999999999887 6789999999999999999999999999999999887642 12444 4569
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCCCC--CccccCCCCCCCCC
Q 001319 1040 VAAHPLEPNQFAIGLTDGSVKVMEPSESE--GKWGVSPPVDNGIL 1082 (1101)
Q Consensus 1040 l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~--~~~~~~~~~~~~~~ 1082 (1101)
+.|+| |+...++|++||+|++|.+..++ +.|+-..|-+.|.-
T Consensus 273 VrFSP-dGE~yAsGSEDGTirlWQt~~~~~~~~~~~~~~ed~~ee 316 (334)
T KOG0278|consen 273 VRFSP-DGELYASGSEDGTIRLWQTTPGKTYGLWKCVKPEDDGEE 316 (334)
T ss_pred EEECC-CCceeeccCCCceEEEEEecCCCchhhccccChhhhccc
Confidence 99999 79999999999999999988777 57777777655443
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.9e-28 Score=297.68 Aligned_cols=322 Identities=16% Similarity=0.208 Sum_probs=246.4
Q ss_pred cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC----ccc
Q 001319 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS----NDL 441 (1101)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~----~~~ 441 (1101)
+|.+++|+......... .....+..|.+.|.+++|+|+|++||+|+.|+.|+|||..+. ...
T Consensus 457 ~gl~~~~~~~~~~~~~~--------------~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~ 522 (793)
T PLN00181 457 EGLCKYLSFSKLRVKAD--------------LKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDI 522 (793)
T ss_pred hhhhhhhcccceEEEEe--------------eccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCccccccccc
Confidence 67788888775443221 011124569999999999999999999999999999998642 111
Q ss_pred c-cceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCe
Q 001319 442 R-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519 (1101)
Q Consensus 442 ~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~ 519 (1101)
. ....+ .+...|.+++|++.... +|++++.|++|++|| .+++.+..+.+|.+.|++++|++. ++.+|++|+.|++
T Consensus 523 ~~~~~~~-~~~~~v~~l~~~~~~~~-~las~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~-~~~~L~Sgs~Dg~ 599 (793)
T PLN00181 523 HYPVVEL-ASRSKLSGICWNSYIKS-QVASSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSA-DPTLLASGSDDGS 599 (793)
T ss_pred ccceEEe-cccCceeeEEeccCCCC-EEEEEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCC-CCCEEEEEcCCCE
Confidence 1 11123 34567999999986433 799999999999999 888889999999999999999864 4579999999999
Q ss_pred EEEEecCCCCeeeeccCCCCceEEEEEc-cCCCEEEEeecCCCCCceEEEEeCCCCe-eEEEecccCCcceEEEEEeCCC
Q 001319 520 IKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQ 597 (1101)
Q Consensus 520 i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~ 597 (1101)
|++||+.++.....+..+ ..+.++.|+ ++|.++++|+. ++.|++||+++++ .+..+.+|.. .+..+.|. ++
T Consensus 600 v~iWd~~~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~----dg~I~iwD~~~~~~~~~~~~~h~~-~V~~v~f~-~~ 672 (793)
T PLN00181 600 VKLWSINQGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA----DHKVYYYDLRNPKLPLCTMIGHSK-TVSYVRFV-DS 672 (793)
T ss_pred EEEEECCCCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC----CCeEEEEECCCCCccceEecCCCC-CEEEEEEe-CC
Confidence 999999988777666544 568899994 57999999985 8999999998765 5667778776 78899997 67
Q ss_pred CEEEEEeCCCcEEEEECCCC------eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCC
Q 001319 598 NHFLAVGEDSQIKFWDMDNV------NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~------~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 671 (1101)
.++++++.|++|++||+..+ ..+..+..+ ...+.+++|+|++.+|++|+.|+.|++|+........ ..
T Consensus 673 ~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh--~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~-s~--- 746 (793)
T PLN00181 673 STLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH--TNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVL-SY--- 746 (793)
T ss_pred CEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC--CCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceE-EE---
Confidence 89999999999999999743 455666554 3468899999999999999999999999976441110 00
Q ss_pred CcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCccc
Q 001319 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 751 (1101)
Q Consensus 672 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 751 (1101)
.+... .....+.. ..+...|.+++|++++..
T Consensus 747 ------------~~~~~----------------------------------~~~~~~~~---~~~~~~V~~v~ws~~~~~ 777 (793)
T PLN00181 747 ------------KFKTI----------------------------------DPVSGLEV---DDASQFISSVCWRGQSST 777 (793)
T ss_pred ------------ecccC----------------------------------Cccccccc---CCCCcEEEEEEEcCCCCe
Confidence 00000 00000000 225667999999999999
Q ss_pred EEEeecCCeEEEEEe
Q 001319 752 LLALGSNGVQKLWKW 766 (1101)
Q Consensus 752 l~~~~~dg~v~~w~~ 766 (1101)
+++++.+|.|++|++
T Consensus 778 lva~~~dG~I~i~~~ 792 (793)
T PLN00181 778 LVAANSTGNIKILEM 792 (793)
T ss_pred EEEecCCCcEEEEec
Confidence 999999999999985
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.6e-30 Score=256.65 Aligned_cols=295 Identities=18% Similarity=0.231 Sum_probs=253.5
Q ss_pred ccCCCCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCc
Q 001319 329 SLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI 407 (1101)
Q Consensus 329 ~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~ 407 (1101)
..+.+|......+. |.++|..+.|-++..+ |++|+.|..|++|++..++... ..++.|..+
T Consensus 159 v~~~lpS~~~~~ld~h~gev~~v~~l~~sdt-latgg~Dr~Ik~W~v~~~k~~~-----------------~~tLaGs~g 220 (459)
T KOG0288|consen 159 VEDTLPSRALFVLDAHEGEVHDVEFLRNSDT-LATGGSDRIIKLWNVLGEKSEL-----------------ISTLAGSLG 220 (459)
T ss_pred hhcccchhhhhhhhccccccceeEEccCcch-hhhcchhhhhhhhhcccchhhh-----------------hhhhhccCC
Confidence 34456666666677 9999999999999653 5999999999999998766322 135888899
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
.|+++.|.++++++++++.|+.+++|++...+... +|.||++.|+++.|..... .+++|+.|.+|++|| ..+.|
T Consensus 221 ~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~---TLsGHtdkVt~ak~~~~~~--~vVsgs~DRtiK~WDl~k~~C 295 (459)
T KOG0288|consen 221 NITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRH---TLSGHTDKVTAAKFKLSHS--RVVSGSADRTIKLWDLQKAYC 295 (459)
T ss_pred CcceeeecCCCceEEeecCCCceeeeeccchhhhh---hhcccccceeeehhhcccc--ceeeccccchhhhhhhhhhhe
Confidence 99999999999999999999999999999987665 7889999999999998777 599999999999999 77888
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceE
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 566 (1101)
..++.. ...+..|+.. ...+++|..|+.||+||+++.........++ .|+++..+++|..+++++. |.++
T Consensus 296 ~kt~l~-~S~cnDI~~~----~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssR----Ddtl 365 (459)
T KOG0288|consen 296 SKTVLP-GSQCNDIVCS----ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSR----DDTL 365 (459)
T ss_pred eccccc-cccccceEec----ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecC----CCce
Confidence 776653 3346666653 2568999999999999999999988887776 7999999999999999986 8899
Q ss_pred EEEeCCCCeeEEEecccC---CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 567 VEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
.+.|+++.+....+.... ....+.+.|+|++.|+++|+.||.|+||++.++++...+........|++++|+|.|..
T Consensus 366 ~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~ 445 (459)
T KOG0288|consen 366 KVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSG 445 (459)
T ss_pred eeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCch
Confidence 999999999888876532 22467799999999999999999999999999999999887766557999999999999
Q ss_pred EEEEEcCCcEEEE
Q 001319 644 LAVTTADNGFKIL 656 (1101)
Q Consensus 644 l~~~~~d~~i~iw 656 (1101)
|++++.++.+.+|
T Consensus 446 Llsadk~~~v~lW 458 (459)
T KOG0288|consen 446 LLSADKQKAVTLW 458 (459)
T ss_pred hhcccCCcceEec
Confidence 9999999999998
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.1e-29 Score=280.48 Aligned_cols=305 Identities=18% Similarity=0.262 Sum_probs=249.6
Q ss_pred CCCcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
++..|.+|+.+|||. .+|||+ .|+.++||+.+.--. ..+.++.. .+.....+..|.+.|+|+.|||||+|
T Consensus 12 ~~~~IfSIdv~pdg~-~~aTgGq~~d~~~~iW~~~~vl~----~~~~~~~~---l~k~l~~m~~h~~sv~CVR~S~dG~~ 83 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGV-KFATGGQVLDGGIVIWSQDPVLD----EKEEKNEN---LPKHLCTMDDHDGSVNCVRFSPDGSY 83 (942)
T ss_pred CCeeEEEEEecCCce-eEecCCccccccceeeccccccc----hhhhhhcc---cchhheeeccccCceeEEEECCCCCe
Confidence 456799999999998 469999 899999999754110 01111111 12222357789999999999999999
Q ss_pred EEEEECCCeEEEEeecC----------C-----cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 421 VGVAFTKHLIQLYSYAG----------S-----NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~----------~-----~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
||+|+.|+.|.||.... | +..+....+.+|...|..++|+|++. +|++++.|++|.||| .+.
T Consensus 84 lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~--~lvS~s~DnsViiwn~~tF 161 (942)
T KOG0973|consen 84 LASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDS--LLVSVSLDNSVIIWNAKTF 161 (942)
T ss_pred EeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCcc--EEEEecccceEEEEccccc
Confidence 99999999999999883 0 11234557889999999999999999 899999999999999 888
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC------CceEEEEEccCCCEEEEeec
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------HWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+.+..+.+|.+.|..+.|.| -|+++++-+.|++|++|+..+.+....+..+- .....+.|||||++|++...
T Consensus 162 ~~~~vl~~H~s~VKGvs~DP--~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 162 ELLKVLRGHQSLVKGVSWDP--IGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeeeeecccccccceEECC--ccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 99999999999999999966 67999999999999999977755555544432 25788999999999999887
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC-----CC------------EEEEEeCCCcEEEEECCCCeeeE
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QN------------HFLAVGEDSQIKFWDMDNVNILT 621 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~------------~l~~~~~dg~i~iwd~~~~~~~~ 621 (1101)
-..+...+.|.+..+.+.-..+-||.. ++.++.|+|. .+ .+++|+.|+.|-||.....+++.
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~LvGH~~-p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~ 318 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLVGHSA-PVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLF 318 (942)
T ss_pred ccCCcceeEEEecCCceeeeeeecCCC-ceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchh
Confidence 777788999999999999999999998 8999999872 11 46678999999999998777765
Q ss_pred eeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
....-. ...|.+++|+|||..|++++.||+|.+..++..
T Consensus 319 vi~~lf-~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 319 VIHNLF-NKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hhhhhh-cCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 543322 237999999999999999999999999988754
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-29 Score=244.51 Aligned_cols=291 Identities=19% Similarity=0.320 Sum_probs=242.8
Q ss_pred CCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE
Q 001319 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
-.|++....+-|.+.|.+|... +++ +.+|+.||.++|||.. |+... ++.||.++|.+
T Consensus 93 ~~aP~pl~~~~hdDWVSsv~~~--~~~-IltgsYDg~~riWd~~-Gk~~~-------------------~~~Ght~~ik~ 149 (423)
T KOG0313|consen 93 ITAPKPLQCFLHDDWVSSVKGA--SKW-ILTGSYDGTSRIWDLK-GKSIK-------------------TIVGHTGPIKS 149 (423)
T ss_pred cCCCCccccccchhhhhhhccc--Cce-EEEeecCCeeEEEecC-CceEE-------------------EEecCCcceee
Confidence 4567777888899999999999 444 5799999999999976 55443 48899999998
Q ss_pred EEEccCC---CEEEEEECCCeEEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC---
Q 001319 412 VAWSPDG---NYVGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS--- 483 (1101)
Q Consensus 412 ~~~spdg---~~las~~~d~~i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~--- 483 (1101)
++|--.. ..+++++.|.++++|.++.++... ......||...|.++...++|. .+++|+.|.+|+||+ ..
T Consensus 150 v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgt--r~~SgS~D~~lkiWs~~~~~~ 227 (423)
T KOG0313|consen 150 VAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGT--RFCSGSWDTMLKIWSVETDEE 227 (423)
T ss_pred eEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCC--eEEeecccceeeecccCCCcc
Confidence 8885433 359999999999999998876532 2223459999999999999999 799999999999999 21
Q ss_pred ----------------------CceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCce
Q 001319 484 ----------------------GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1101)
Q Consensus 484 ----------------------~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 541 (1101)
+.++.++.||+.+|.++.|.+ ...+++++.|.+|+.||+.+++....+... ...
T Consensus 228 ~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d---~~v~yS~SwDHTIk~WDletg~~~~~~~~~-ksl 303 (423)
T KOG0313|consen 228 DELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD---ATVIYSVSWDHTIKVWDLETGGLKSTLTTN-KSL 303 (423)
T ss_pred ccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC---CCceEeecccceEEEEEeecccceeeeecC-cce
Confidence 134567899999999999975 358999999999999999999988877644 458
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe---eEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT---IKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~---~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1101)
.++.++|..++|++++. +..|++||.+++. ...+|.+|.+ .|..+.|+|... .|++++.|+++++||+++-
T Consensus 304 ~~i~~~~~~~Ll~~gss----dr~irl~DPR~~~gs~v~~s~~gH~n-wVssvkwsp~~~~~~~S~S~D~t~klWDvRS~ 378 (423)
T KOG0313|consen 304 NCISYSPLSKLLASGSS----DRHIRLWDPRTGDGSVVSQSLIGHKN-WVSSVKWSPTNEFQLVSGSYDNTVKLWDVRST 378 (423)
T ss_pred eEeecccccceeeecCC----CCceeecCCCCCCCceeEEeeecchh-hhhheecCCCCceEEEEEecCCeEEEEEeccC
Confidence 99999999999999987 8899999998753 5677889988 899999999764 5667899999999999987
Q ss_pred e-eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 618 N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 618 ~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+ .+..+..|. ..|.++.|+ ++..+++|+.|.+|+++...
T Consensus 379 k~plydI~~h~--DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 379 KAPLYDIAGHN--DKVLSVDWN-EGGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred CCcceeeccCC--ceEEEEecc-CCceEEeccCcceEEEeccc
Confidence 7 788887664 489999997 56699999999999998643
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.9e-28 Score=234.59 Aligned_cols=307 Identities=14% Similarity=0.214 Sum_probs=240.1
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCcee-ccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
....|++.+.+-+|||||. |+|+|+.|..|+|.|+...--. ....+..-+.+ ..+|+. +++..|.+.|+++.|+|.
T Consensus 107 ylt~HK~~cR~aafs~DG~-lvATGsaD~SIKildvermlaks~~~em~~~~~q-a~hPvI-RTlYDH~devn~l~FHPr 183 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGS-LVATGSADASIKILDVERMLAKSKPKEMISGDTQ-ARHPVI-RTLYDHVDEVNDLDFHPR 183 (430)
T ss_pred EEeecccceeeeeeCCCCc-EEEccCCcceEEEeehhhhhhhcchhhhccCCcc-cCCceE-eehhhccCcccceeecch
Confidence 3345999999999999998 8899999999999998621000 00000000111 112222 468899999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe---ecC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGH 493 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~---~~h 493 (1101)
...|++|+.|++|++||+..-...+-++.+ ....+|.++.|.|.|. +|+.|.+-.++++|| .+-++...- .+|
T Consensus 184 e~ILiS~srD~tvKlFDfsK~saKrA~K~~-qd~~~vrsiSfHPsGe--fllvgTdHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 184 ETILISGSRDNTVKLFDFSKTSAKRAFKVF-QDTEPVRSISFHPSGE--FLLVGTDHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred hheEEeccCCCeEEEEecccHHHHHHHHHh-hccceeeeEeecCCCc--eEEEecCCCceeEEeccceeEeeecCccccc
Confidence 999999999999999999765433333233 3456899999999999 799999999999999 776665433 469
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC-C-CCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-P-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
++.|+++.+++ .+++.++++.||.|++||--+..++..+.. | +..|.+..|+.+|+++++.+. |..+++|.+
T Consensus 261 t~ai~~V~Ys~--t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~----DS~vkLWEi 334 (430)
T KOG0640|consen 261 TGAITQVRYSS--TGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGK----DSTVKLWEI 334 (430)
T ss_pred ccceeEEEecC--CccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCC----cceeeeeee
Confidence 99999999976 668999999999999999888777765532 3 347999999999999999885 999999999
Q ss_pred CCCeeEEEecccCC----cceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEE
Q 001319 572 SEGTIKRTYAGFRK----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~----~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1101)
.+++++..+.|... .--+...|+....+++.-. ..+.+.-||.+++..+..+. .+|.+.+..+.-||.+.-+++
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~s-lgHn~a~R~i~HSP~~p~FmT 413 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLS-LGHNGAVRWIVHSPVEPAFMT 413 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcc-cCCCCCceEEEeCCCCCceee
Confidence 99999999987521 1122356777778887755 56789999999987766654 356678999999999999999
Q ss_pred EEcCCcEEEEEc
Q 001319 647 TTADNGFKILAN 658 (1101)
Q Consensus 647 ~~~d~~i~iwd~ 658 (1101)
++.|..+++|--
T Consensus 414 csdD~raRFWyr 425 (430)
T KOG0640|consen 414 CSDDFRARFWYR 425 (430)
T ss_pred ecccceeeeeee
Confidence 999999999963
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-28 Score=251.24 Aligned_cols=282 Identities=20% Similarity=0.279 Sum_probs=238.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..+.|.+++|||...|=+|+.+ .-.+.||+..+..... ++......|+++.|-.||++||
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~-S~rvqly~~~~~~~~k-------------------~~srFk~~v~s~~fR~DG~Lla 84 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTS-SVRVQLYSSVTRSVRK-------------------TFSRFKDVVYSVDFRSDGRLLA 84 (487)
T ss_pred ccCcceeEecCCCCCCceEEec-ccEEEEEecchhhhhh-------------------hHHhhccceeEEEeecCCeEEE
Confidence 3468999999996655445443 3489999988766543 2444567899999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+|+..|.|+|||+++...++ .+.+|+.+|..+.|+|++.. .+++|++|+.+++|| .+......+.+|++.|.+.+
T Consensus 85 aGD~sG~V~vfD~k~r~iLR---~~~ah~apv~~~~f~~~d~t-~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~ 160 (487)
T KOG0310|consen 85 AGDESGHVKVFDMKSRVILR---QLYAHQAPVHVTKFSPQDNT-MLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGD 160 (487)
T ss_pred ccCCcCcEEEeccccHHHHH---HHhhccCceeEEEecccCCe-EEEecCCCceEEEEEcCCcEEEEEecCCcceeEeec
Confidence 99999999999977755555 67899999999999999886 899999999999999 55555568999999999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-eEEEe
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTY 580 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~ 580 (1101)
|+|.. +.++++|+.||.|++||.+.......--.|+.+|..+.+-|.|..+++++ .+.+++||+.+|. .+..+
T Consensus 161 ~~~~~-~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-----Gn~vkVWDl~~G~qll~~~ 234 (487)
T KOG0310|consen 161 ISPAN-DHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-----GNSVKVWDLTTGGQLLTSM 234 (487)
T ss_pred cccCC-CeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-----CCeEEEEEecCCceehhhh
Confidence 99864 47999999999999999998865555556889999999999999999986 6689999999655 44455
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
..|.. .|+|+++..++..|++++-|+.|++||..+.+.+..+...+ +|.+++.+|+++.++.|..+|.+.+-+.
T Consensus 235 ~~H~K-tVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~~~---pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 235 FNHNK-TVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKYPG---PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred hcccc-eEEEEEeecCCceEeecccccceEEEEccceEEEEeeeccc---ceeeEEecCCCceEEEecccceeeeehh
Confidence 54665 89999999999999999999999999999999999887754 6899999999999999999999877543
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.9e-27 Score=234.87 Aligned_cols=286 Identities=20% Similarity=0.343 Sum_probs=241.0
Q ss_pred cccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCC-CccEEEEeccCCeEEEEecCC
Q 001319 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 449 ~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
-|.+.|.++.-. ++ .++||+.||.+++||..|++...+.||.++|.+++|.... ....+++++.|.++++|.++.
T Consensus 103 ~hdDWVSsv~~~--~~--~IltgsYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 103 LHDDWVSSVKGA--SK--WILTGSYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred cchhhhhhhccc--Cc--eEEEeecCCeeEEEecCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 588899999887 55 7999999999999999999999999999999988876432 224699999999999999887
Q ss_pred CCeee----eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-------------------------CCeeEE
Q 001319 528 MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-------------------------EGTIKR 578 (1101)
Q Consensus 528 ~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-------------------------~~~~~~ 578 (1101)
+.... ...+|...|.++...++|..+++++. |.+|.+|+.. ++.++.
T Consensus 179 ~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~----D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~v 254 (423)
T KOG0313|consen 179 GENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSW----DTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLV 254 (423)
T ss_pred chhhhhHHhHhcccccceeEEEecCCCCeEEeecc----cceeeecccCCCccccccccchhhhhhhhhhhcccccCceE
Confidence 66543 33488889999999999999999997 9999999922 123566
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++.||.+ .|..+.|++ ...+++++.|.+|+.||+.++.....+.... .++++..+|..++|++|+.|..+++||.
T Consensus 255 tl~GHt~-~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~k---sl~~i~~~~~~~Ll~~gssdr~irl~DP 329 (423)
T KOG0313|consen 255 TLEGHTE-PVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK---SLNCISYSPLSKLLASGSSDRHIRLWDP 329 (423)
T ss_pred Eeccccc-ceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCc---ceeEeecccccceeeecCCCCceeecCC
Confidence 7888888 899999988 6789999999999999999999888876543 5789999999999999999999999986
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
+++.
T Consensus 330 R~~~---------------------------------------------------------------------------- 333 (423)
T KOG0313|consen 330 RTGD---------------------------------------------------------------------------- 333 (423)
T ss_pred CCCC----------------------------------------------------------------------------
Confidence 5440
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCe
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 818 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 818 (1101)
|
T Consensus 334 -----------------------------------------------------------------------------g-- 334 (423)
T KOG0313|consen 334 -----------------------------------------------------------------------------G-- 334 (423)
T ss_pred -----------------------------------------------------------------------------C--
Confidence 0
Q ss_pred EEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce-EEEeeccCCCCeeEEEEc
Q 001319 819 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 819 la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~-~~~~~~~h~~~V~~l~~s 897 (1101)
.-...++.+|.+.|.++.|+|.+...|++|+.|+++++||+++.+ .+..+.+|.+.|.++.|+
T Consensus 335 ----------------s~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~ 398 (423)
T KOG0313|consen 335 ----------------SVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN 398 (423)
T ss_pred ----------------ceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc
Confidence 011235567888899999999888899999999999999999887 899999999999999998
Q ss_pred CCCCEEEEEeCCCcEEEEECCC
Q 001319 898 TSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
++..+++||.|.+|+++.-..
T Consensus 399 -~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 399 -EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred -CCceEEeccCcceEEEecccc
Confidence 557999999999999987543
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.1e-27 Score=222.22 Aligned_cols=287 Identities=12% Similarity=0.128 Sum_probs=236.8
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
+.+.||..+++.|.|+.+|. ||.++++|.++.+|-..+|+.+- ++.||++.|+|++.+-+
T Consensus 4 i~l~GHERplTqiKyN~eGD-LlFscaKD~~~~vw~s~nGerlG-------------------ty~GHtGavW~~Did~~ 63 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKYNREGD-LLFSCAKDSTPTVWYSLNGERLG-------------------TYDGHTGAVWCCDIDWD 63 (327)
T ss_pred cccccCccccceEEecCCCc-EEEEecCCCCceEEEecCCceee-------------------eecCCCceEEEEEecCC
Confidence 44567999999999999999 77899999999999988898876 48999999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-----CCceEEEEE-c-------CC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-----DDKLIKVWE-L-------SG 484 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-----~d~~v~iwd-~-------~~ 484 (1101)
.+++++|+.|.++++||+++|+++.. + ....+|..+.|+++|.. ++.+. ..+.|.++| . ..
T Consensus 64 s~~liTGSAD~t~kLWDv~tGk~la~---~-k~~~~Vk~~~F~~~gn~--~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ 137 (327)
T KOG0643|consen 64 SKHLITGSADQTAKLWDVETGKQLAT---W-KTNSPVKRVDFSFGGNL--ILASTDKQMGYTCFVSVFDIRDDSSDIDSE 137 (327)
T ss_pred cceeeeccccceeEEEEcCCCcEEEE---e-ecCCeeEEEeeccCCcE--EEEEehhhcCcceEEEEEEccCChhhhccc
Confidence 99999999999999999999998773 2 34668999999999993 44333 345788999 4 33
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
.+...+..+...++.+.|.+. +++|++|..||.|..||++++.... ....|...|+.+.+++|..++++++. |
T Consensus 138 ep~~kI~t~~skit~a~Wg~l--~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~----D 211 (327)
T KOG0643|consen 138 EPYLKIPTPDSKITSALWGPL--GETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSK----D 211 (327)
T ss_pred CceEEecCCccceeeeeeccc--CCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEeccc----C
Confidence 457888888899999999875 4799999999999999999976554 44678889999999999999999986 8
Q ss_pred ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCc--EEEEECCCCe------------eeEeeccCCCC
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ--IKFWDMDNVN------------ILTSTDAEGGL 629 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~--i~iwd~~~~~------------~~~~~~~~~~~ 629 (1101)
.+-++||..+-+.++++.... ++++.+++|...+++.||.... |.--+.+.|+ .+..+ .+|.
T Consensus 212 ttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrv--kGHF 287 (327)
T KOG0643|consen 212 TTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRV--KGHF 287 (327)
T ss_pred ccceeeeccceeeEEEeeecc--cccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccc--cccc
Confidence 899999999999999998754 7999999999888888764322 2222222222 22333 3557
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
++|++++|+|+|+..++|+.||.|++...+.
T Consensus 288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 7999999999999999999999999986654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-27 Score=266.71 Aligned_cols=292 Identities=17% Similarity=0.276 Sum_probs=251.0
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
.|+....+......-.|...|.+..|. +| .+++|+.|++|++||..++..+.. .+.||.
T Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~q~~-~~--~~~~~s~~~tl~~~~~~~~~~i~~------------------~l~GH~ 249 (537)
T KOG0274|consen 191 NWRKLFRRGYKVLLGTDDHVVLCLQLH-DG--FFKSGSDDSTLHLWDLNNGYLILT------------------RLVGHF 249 (537)
T ss_pred cccccccccceeecccCcchhhhheee-cC--eEEecCCCceeEEeecccceEEEe------------------eccCCC
Confidence 444444444333333467899999999 44 358999999999999999887752 388999
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~ 485 (1101)
+.|.+++|..-+.+|++|+.|.+++|||+.+|++.. .+.+|...|.++...+. ++++|+.|.+|++|+ .++.
T Consensus 250 g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~---~l~gh~stv~~~~~~~~----~~~sgs~D~tVkVW~v~n~~ 322 (537)
T KOG0274|consen 250 GGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTH---SLQGHTSSVRCLTIDPF----LLVSGSRDNTVKVWDVTNGA 322 (537)
T ss_pred CCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEE---EecCCCceEEEEEccCc----eEeeccCCceEEEEeccCcc
Confidence 999999998888999999999999999999999988 78899999999987644 689999999999999 8899
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
++..+.+|.++|.++... +.++++|+.|++|++||+.+.++...+.+|...|.++.+... ..+++|+. |+.
T Consensus 323 ~l~l~~~h~~~V~~v~~~----~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~----D~~ 393 (537)
T KOG0274|consen 323 CLNLLRGHTGPVNCVQLD----EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSL----DTT 393 (537)
T ss_pred eEEEeccccccEEEEEec----CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeee----ccc
Confidence 999999999999999874 469999999999999999999999999999999999988776 88999987 889
Q ss_pred EEEEeCCCC-eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE
Q 001319 566 LVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1101)
Q Consensus 566 i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1101)
|++||+.++ +++.++.+|.. .+..+. ..+++|++++.|++|++||..+++++..+... +...|..+++. ...+
T Consensus 394 IkvWdl~~~~~c~~tl~~h~~-~v~~l~--~~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~-~~~~v~~l~~~--~~~i 467 (537)
T KOG0274|consen 394 IKVWDLRTKRKCIHTLQGHTS-LVSSLL--LRDNFLVSSSADGTIKLWDAEEGECLRTLEGR-HVGGVSALALG--KEEI 467 (537)
T ss_pred eEeecCCchhhhhhhhcCCcc-cccccc--cccceeEeccccccEEEeecccCceeeeeccC-CcccEEEeecC--cceE
Confidence 999999999 99999999887 454433 45689999999999999999999999999874 33456666664 4788
Q ss_pred EEEEcCCcEEEEEcccc
Q 001319 645 AVTTADNGFKILANAIG 661 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~~~ 661 (1101)
++++.|+.+++||+.++
T Consensus 468 l~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 468 LCSSDDGSVKLWDLRSG 484 (537)
T ss_pred EEEecCCeeEEEecccC
Confidence 99999999999999988
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.7e-27 Score=219.79 Aligned_cols=275 Identities=15% Similarity=0.224 Sum_probs=235.8
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~ 419 (1101)
.+|...|.+|+|+-+|.+ ||+|+.|+++.+|+++....... ....+|.+.|-.++|+| ...
T Consensus 17 ~~~~~~v~Sv~wn~~g~~-lasgs~dktv~v~n~e~~r~~~~-----------------~~~~gh~~svdql~w~~~~~d 78 (313)
T KOG1407|consen 17 QGHVQKVHSVAWNCDGTK-LASGSFDKTVSVWNLERDRFRKE-----------------LVYRGHTDSVDQLCWDPKHPD 78 (313)
T ss_pred hhhhhcceEEEEcccCce-eeecccCCceEEEEecchhhhhh-----------------hcccCCCcchhhheeCCCCCc
Confidence 358899999999999996 59999999999999987744331 24788999999999999 567
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
.+|+++.|.+|++||+..+++... ... .+.=.-+.|+|+|. +++.++.|..|.+.| .+.+.+...+ ..-.+.
T Consensus 79 ~~atas~dk~ir~wd~r~~k~~~~---i~~-~~eni~i~wsp~g~--~~~~~~kdD~it~id~r~~~~~~~~~-~~~e~n 151 (313)
T KOG1407|consen 79 LFATASGDKTIRIWDIRSGKCTAR---IET-KGENINITWSPDGE--YIAVGNKDDRITFIDARTYKIVNEEQ-FKFEVN 151 (313)
T ss_pred ceEEecCCceEEEEEeccCcEEEE---eec-cCcceEEEEcCCCC--EEEEecCcccEEEEEecccceeehhc-ccceee
Confidence 899999999999999999998773 322 23334688999999 799999999999999 6666554443 445678
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
-++|+. ++.+++.....|+|.|..+...+....+..|.....|+.|+|+|+++|+|+. |..+.+||++.--+.+
T Consensus 152 e~~w~~--~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsA----DAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 152 EISWNN--SNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSA----DALVSLWDVDELICER 225 (313)
T ss_pred eeeecC--CCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccc----cceeeccChhHhhhhe
Confidence 888875 3456766777899999999999999999999999999999999999999997 8899999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+..+.- +|..++|+-+|++|+++++|..|-|-++++|..+..++..+ +...++|+|...+||.+++|
T Consensus 226 ~isRldw-pVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~---~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 226 CISRLDW-PVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEG---PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred eeccccC-ceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccC---CceeEEecCCCceeeEEecC
Confidence 9988776 89999999999999999999999999999999999998754 56899999999999998775
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.5e-27 Score=221.11 Aligned_cols=300 Identities=12% Similarity=0.207 Sum_probs=239.0
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.||+.+++.+.++.+|.+|.+|+.|.++.||-..+|+.+. ++.||++.|+|++..-+.+ .+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlG---ty~GHtGavW~~Did~~s~--~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLG---TYDGHTGAVWCCDIDWDSK--HLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceee---eecCCCceEEEEEecCCcc--eeeeccccceeEEE
Confidence 488999999999999999999999999999999998998777 7999999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEecc-----CCeEEEEecC-------CCCeeeeccCCCCceEEEEEc
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYD-------TMGSRVDYDAPGHWCTTMLYS 547 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-----d~~i~~wd~~-------~~~~~~~~~~~~~~v~~~~~s 547 (1101)
| .+|+++..++ ...+|..+.|++. |++++.... .+.|.++|++ ..++...+..+...++.+.|+
T Consensus 80 Dv~tGk~la~~k-~~~~Vk~~~F~~~--gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg 156 (327)
T KOG0643|consen 80 DVETGKQLATWK-TNSPVKRVDFSFG--GNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWG 156 (327)
T ss_pred EcCCCcEEEEee-cCCeeEEEeeccC--CcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeec
Confidence 9 9999999987 4668999999874 456555543 3578999987 445567777788899999999
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeE-EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
|-+++|++|.. +|.|.+||.++|+.. ..-..|.. .|+.++++++..++++++.|.+-++||+.+-+.++++...
T Consensus 157 ~l~~~ii~Ghe----~G~is~~da~~g~~~v~s~~~h~~-~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te 231 (327)
T KOG0643|consen 157 PLGETIIAGHE----DGSISIYDARTGKELVDSDEEHSS-KINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTE 231 (327)
T ss_pred ccCCEEEEecC----CCcEEEEEcccCceeeechhhhcc-ccccccccCCcceEEecccCccceeeeccceeeEEEeeec
Confidence 99999999975 999999999998554 44455555 8999999999999999999999999999999999988754
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceecc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 706 (1101)
.+|++.+++|....++.|+...-.-+ .+.....-.++..-+
T Consensus 232 ---~PvN~aaisP~~d~VilgGGqeA~dV---TTT~~r~GKFEArFy--------------------------------- 272 (327)
T KOG0643|consen 232 ---RPVNTAAISPLLDHVILGGGQEAMDV---TTTSTRAGKFEARFY--------------------------------- 272 (327)
T ss_pred ---ccccceecccccceEEecCCceeeee---eeecccccchhhhHH---------------------------------
Confidence 37999999998888887765332222 111000001111000
Q ss_pred CCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecC
Q 001319 707 SPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 707 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~ 768 (1101)
+..-..+ +...++|-++|++++|+|+|+...+++.||.|++.-++.
T Consensus 273 -----------h~i~eEE-----igrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 273 -----------HLIFEEE-----IGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred -----------HHHHHHH-----hccccccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 0000000 011167999999999999999999999999999986653
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.6e-27 Score=223.75 Aligned_cols=273 Identities=17% Similarity=0.268 Sum_probs=220.8
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCC-ceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
..+.|.+++|||....+++.||-||+||+|+++.. ..+. +....|.++|.+++|+.||..+
T Consensus 26 P~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~------------------ka~~~~~~PvL~v~WsddgskV 87 (347)
T KOG0647|consen 26 PEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP------------------KAQQSHDGPVLDVCWSDDGSKV 87 (347)
T ss_pred cccchheeEeccccCceEEecccCCceEEEEEecCCcccc------------------hhhhccCCCeEEEEEccCCceE
Confidence 46799999999966668889999999999999873 3322 2366799999999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
++|+.|+.+++||+.+++.. .+..|.++|.++.|-+...+..|+|||.|++|+.|| ....++.++. -.+++.++
T Consensus 88 f~g~~Dk~~k~wDL~S~Q~~----~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~-LPeRvYa~ 162 (347)
T KOG0647|consen 88 FSGGCDKQAKLWDLASGQVS----QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQ-LPERVYAA 162 (347)
T ss_pred EeeccCCceEEEEccCCCee----eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeee-ccceeeeh
Confidence 99999999999999998543 477899999999999877666899999999999999 7777887776 45567777
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC--ee
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TI 576 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~ 576 (1101)
..-. .+++.+..++.|.+|+++++...+.. .. -.-.++|++..+|....+.|+- +|.+.+..+..+ +.
T Consensus 163 Dv~~----pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsi----EGrv~iq~id~~~~~~ 234 (347)
T KOG0647|consen 163 DVLY----PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSI----EGRVAIQYIDDPNPKD 234 (347)
T ss_pred hccC----ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeee----cceEEEEecCCCCccC
Confidence 6532 47889999999999999776544322 22 2236889999998888888876 777877777765 44
Q ss_pred EEEecccCC--------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 577 KRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 577 ~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
-.+|+.|.. ..|+.++|+|.-..|+++|.||++.+||-.....+...+.+.. +|++..|+.+|.+++.+.
T Consensus 235 nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~q--pItcc~fn~~G~ifaYA~ 312 (347)
T KOG0647|consen 235 NFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQ--PITCCSFNRNGSIFAYAL 312 (347)
T ss_pred ceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCC--ccceeEecCCCCEEEEEe
Confidence 556666652 2366799999999999999999999999988877777666544 899999999999888764
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.7e-27 Score=265.93 Aligned_cols=304 Identities=16% Similarity=0.253 Sum_probs=242.9
Q ss_pred CcccEEEEEeecCcccEEEee--cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 736 TSSKVVRLLYTNSAVGLLALG--SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~--~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
+...|.++..+|+|..+++++ .||.+++|+.+.--. ....++..-...+.. . ..|.+.|.|+.|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~----------~~~~~~~~l~k~l~~-m--~~h~~sv~CVR~S 78 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLD----------EKEEKNENLPKHLCT-M--DDHDGSVNCVRFS 78 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccc----------hhhhhhcccchhhee-e--ccccCceeEEEEC
Confidence 455689999999999999999 899999998653211 011111110011111 1 1399999999999
Q ss_pred CCCCeEEEEc-CCeEEEEECC------------------CceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 814 KNDSYVMSAT-GGKISLFNMM------------------TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~------------------~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
+||++||+|+ |+.|.||+.. .++.+..+.+|...|..++|+| ++.+||+++.|++|.||+
T Consensus 79 ~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp-~~~~lvS~s~DnsViiwn 157 (942)
T KOG0973|consen 79 PDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP-DDSLLVSVSLDNSVIIWN 157 (942)
T ss_pred CCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCC-CccEEEEecccceEEEEc
Confidence 9999999999 5668999876 2346788999999999999999 999999999999999999
Q ss_pred eecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE
Q 001319 875 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 954 (1101)
Q Consensus 875 ~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 954 (1101)
..+.+.+.++.+|.+.|..+.|.|-|++|||-++|++|++|++.+....+...-.............+.|||||.+|++.
T Consensus 158 ~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~ 237 (942)
T KOG0973|consen 158 AKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASP 237 (942)
T ss_pred cccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecch
Confidence 99999999999999999999999999999999999999999988866555443332222222678899999999999984
Q ss_pred e-----CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccC-----CC------------EEEEEeCCCcEEEEeCCCC
Q 001319 955 H-----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCN-----SQ------------LVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 955 ~-----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~d-----g~------------~l~s~~~dg~i~vwd~~~~ 1012 (1101)
. -..+.|.+-.+.+.-..+.+| .+++++++|+|. .+ .+|+|+.|++|.||.....
T Consensus 238 nA~n~~~~~~~IieR~tWk~~~~LvGH---~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 238 NAVNGGKSTIAIIERGTWKVDKDLVGH---SAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred hhccCCcceeEEEecCCceeeeeeecC---CCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 2 357889999888888888776 789999999971 11 5778999999999999877
Q ss_pred ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1013 RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.+..+. +-..-.++.++|+| ||..|+.+|.||+|.+..+++.|
T Consensus 315 RPl~vi~-----------~lf~~SI~DmsWsp-dG~~LfacS~DGtV~~i~Fee~E 358 (942)
T KOG0973|consen 315 RPLFVIH-----------NLFNKSIVDMSWSP-DGFSLFACSLDGTVALIHFEEKE 358 (942)
T ss_pred Cchhhhh-----------hhhcCceeeeeEcC-CCCeEEEEecCCeEEEEEcchHH
Confidence 7665544 22223467999999 79999999999999999998766
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-26 Score=258.48 Aligned_cols=286 Identities=13% Similarity=0.103 Sum_probs=221.2
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~la 422 (1101)
-..|....+++|+..+ ++++.+..+..|+...+..+.. .............+.+|.+.|.+++|+| |+++||
T Consensus 20 ~~~i~~~~~~~d~~~~-~~~n~~~~a~~w~~~gg~~v~~------~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~La 92 (493)
T PTZ00421 20 FLNVTPSTALWDCSNT-IACNDRFIAVPWQQLGSTAVLK------HTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLF 92 (493)
T ss_pred eeccccccccCCCCCc-EeECCceEEEEEecCCceEEee------ccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEE
Confidence 3467777888887644 5667788888898766543221 0000111111234789999999999999 899999
Q ss_pred EEECCCeEEEEeecCCcc----cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 423 VAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
+|+.|++|++||+.++.. ......+.+|...|.+++|+|++.. +|++++.|++|+||| .+++.+..+.+|...|
T Consensus 93 SgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~-iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V 171 (493)
T PTZ00421 93 TASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMN-VLASAGADMVVNVWDVERGKAVEVIKCHSDQI 171 (493)
T ss_pred EEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCC-EEEEEeCCCEEEEEECCCCeEEEEEcCCCCce
Confidence 999999999999987532 1233468899999999999998644 799999999999999 8888899999999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCc-eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT- 575 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~- 575 (1101)
.+++|++ +|.+|++++.|++|++||++++.....+..|.+. +..+.|.+++..+++++.+...++.|++||+++..
T Consensus 172 ~sla~sp--dG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~ 249 (493)
T PTZ00421 172 TSLEWNL--DGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMAS 249 (493)
T ss_pred EEEEEEC--CCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCC
Confidence 9999987 6689999999999999999998888777777653 45678999988888877655568899999998754
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
.......+....+....|+++++.+++++ .|+.|++||+.+++.+....... ..++..++|.|.
T Consensus 250 p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s-~~~~~g~~~~pk 314 (493)
T PTZ00421 250 PYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSS-VEPHKGLCMMPK 314 (493)
T ss_pred ceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccC-CCCCcceEeccc
Confidence 34444434433556678999999999987 59999999999998777654432 335778888884
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.4e-27 Score=261.49 Aligned_cols=300 Identities=16% Similarity=0.204 Sum_probs=217.6
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc---CC
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DG 418 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp---dg 418 (1101)
.|.+.||+|.||+||+| ||+|+.||.|+||.+...+.... ..-+....... +.. ...+..+.-++ .+
T Consensus 265 ah~gaIw~mKFS~DGKy-LAsaGeD~virVWkVie~e~~~~---~~~~~~~~~~~-----~~~-~s~~~p~~s~~~~~~~ 334 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKY-LASAGEDGVIRVWKVIESERMRV---AEGDSSCMYFE-----YNA-NSQIEPSTSSEEKISS 334 (712)
T ss_pred ccCCcEEEEEeCCCCce-eeecCCCceEEEEEEeccchhcc---cccccchhhhh-----hhh-ccccCccccccccccc
Confidence 59999999999999995 59999999999999976443210 00000000000 000 00011111111 01
Q ss_pred C--EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 419 N--YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 419 ~--~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
+ ..-.+.....+.+-+..-.-.-+++..+.||.+.|.++.||.++ +|+|++.|++|++|+ ....|+..|. |..
T Consensus 335 ~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~---fLLSSSMDKTVRLWh~~~~~CL~~F~-Hnd 410 (712)
T KOG0283|consen 335 RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNN---FLLSSSMDKTVRLWHPGRKECLKVFS-HND 410 (712)
T ss_pred cccccccccCCccccCCCccccccccchhhhhccchhheecccccCC---eeEeccccccEEeecCCCcceeeEEe-cCC
Confidence 1 11122222222222211111123444788999999999999876 699999999999999 8888888887 999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|+||+|+|..| +++++|+.|+.||||++...+.......+ .-|++++|+|||++.++|+. +|..++|+....+
T Consensus 411 fVTcVaFnPvDD-ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~----~G~C~fY~t~~lk 484 (712)
T KOG0283|consen 411 FVTCVAFNPVDD-RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTF----NGYCRFYDTEGLK 484 (712)
T ss_pred eeEEEEecccCC-CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEe----ccEEEEEEccCCe
Confidence 999999999855 79999999999999999776665554444 67999999999999999997 8999999998877
Q ss_pred eEEEecccC-------CcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 576 IKRTYAGFR-------KKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 576 ~~~~~~~~~-------~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
....+.-+. ...|+.+.|.|.. ..+++.+.|..|+|+|.++..++..+++......-....|+.||++|+++
T Consensus 485 ~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~ 564 (712)
T KOG0283|consen 485 LVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSA 564 (712)
T ss_pred EEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEe
Confidence 766543221 2258889888743 46888999999999999998898888866555555678899999999999
Q ss_pred EcCCcEEEEEcccc
Q 001319 648 TADNGFKILANAIG 661 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~ 661 (1101)
+.|..|++|+....
T Consensus 565 seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 565 SEDSWVYIWKNDSF 578 (712)
T ss_pred ecCceEEEEeCCCC
Confidence 99999999998544
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4e-27 Score=225.60 Aligned_cols=292 Identities=17% Similarity=0.236 Sum_probs=234.5
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecC------------Cc---ccccceeeecccCcEEEEEEecCCCc
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG------------SN---DLRQHSQIDAHVGAVNDLAFAYPNKL 465 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~------------~~---~~~~~~~l~~h~~~V~~l~~s~d~~~ 465 (1101)
.+..|.+++.+.+|||||.++|+|+.|..|+|.|++. |. .-..+.++-.|.+.|+++.|.|...
T Consensus 107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~- 185 (430)
T KOG0640|consen 107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRET- 185 (430)
T ss_pred EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhh-
Confidence 4777999999999999999999999999999999871 11 1112346778999999999999999
Q ss_pred eEEEEecCCceEEEEE-cCCceeE--EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec---cCCCC
Q 001319 466 LCVVTCGDDKLIKVWE-LSGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGH 539 (1101)
Q Consensus 466 ~~l~s~~~d~~v~iwd-~~~~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~ 539 (1101)
+|++|+.|++|++|| ......+ .......+|.++.|+| .|.+|+.|....++++||+++.++...- ..|..
T Consensus 186 -ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHP--sGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ 262 (430)
T KOG0640|consen 186 -ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHP--SGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTG 262 (430)
T ss_pred -eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecC--CCceEEEecCCCceeEEeccceeEeeecCccccccc
Confidence 999999999999999 3322222 2223456899999998 4579999999999999999998876643 34566
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc-cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
.|+++.+++.|+..++++. ||.|++||--+++++.++.. |.+..|.+..|..+++++++.|.|..+++|.+.+++
T Consensus 263 ai~~V~Ys~t~~lYvTaSk----DG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R 338 (430)
T KOG0640|consen 263 AITQVRYSSTGSLYVTASK----DGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGR 338 (430)
T ss_pred ceeEEEecCCccEEEEecc----CCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCc
Confidence 8999999999999999985 99999999999999998864 555678889999999999999999999999999999
Q ss_pred eeEeeccCCCCC---CCCeeEEecCCCEEEEEEc-CCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccc
Q 001319 619 ILTSTDAEGGLP---NLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 619 ~~~~~~~~~~~~---~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
.+..+.+.+..+ .-+...|+....+++.-.. .+.+.-||..+..+.. .+
T Consensus 339 ~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~-l~-------------------------- 391 (430)
T KOG0640|consen 339 MLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVA-LL-------------------------- 391 (430)
T ss_pred eEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhh-hc--------------------------
Confidence 999887664322 1234556666666655443 4678888887662211 00
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
..+|.+.+..+..+|.+..+++++.|-.+++|-
T Consensus 392 --------------------------------------slgHn~a~R~i~HSP~~p~FmTcsdD~raRFWy 424 (430)
T KOG0640|consen 392 --------------------------------------SLGHNGAVRWIVHSPVEPAFMTCSDDFRARFWY 424 (430)
T ss_pred --------------------------------------ccCCCCCceEEEeCCCCCceeeecccceeeeee
Confidence 044888999999999999999999999999995
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-26 Score=248.55 Aligned_cols=277 Identities=15% Similarity=0.229 Sum_probs=236.5
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d 427 (1101)
.-++||..+ ++|+| ....|.+|+..++..... ...++..|+++.|+++|.+||+|..+
T Consensus 181 nlldWss~n--~laVa-lg~~vylW~~~s~~v~~l-------------------~~~~~~~vtSv~ws~~G~~LavG~~~ 238 (484)
T KOG0305|consen 181 NLLDWSSAN--VLAVA-LGQSVYLWSASSGSVTEL-------------------CSFGEELVTSVKWSPDGSHLAVGTSD 238 (484)
T ss_pred hHhhcccCC--eEEEE-ecceEEEEecCCCceEEe-------------------EecCCCceEEEEECCCCCEEEEeecC
Confidence 346778555 56776 456899999998875431 22237899999999999999999999
Q ss_pred CeEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE-EeecCCcCeEEEeccc
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-NFEGHEAPVYSICPHH 504 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~-~~~~h~~~v~~v~~~~ 504 (1101)
|.|.|||..+.+.++ .+.+ |...|-+++|. +. .+.+|+.|+.|..+| ...+... ++.+|...|..+.|++
T Consensus 239 g~v~iwD~~~~k~~~---~~~~~h~~rvg~laW~--~~--~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~ 311 (484)
T KOG0305|consen 239 GTVQIWDVKEQKKTR---TLRGSHASRVGSLAWN--SS--VLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSP 311 (484)
T ss_pred CeEEEEehhhccccc---cccCCcCceeEEEecc--Cc--eEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEECC
Confidence 999999999987776 5667 99999999998 44 799999999999999 5555443 4889999999999977
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1101)
|+.++++|+.|+.+.|||.........+..|...|.+++|+| ....||+|+. ..|+.|++||..+++.+......
T Consensus 312 --d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGG--s~D~~i~fwn~~~g~~i~~vdtg 387 (484)
T KOG0305|consen 312 --DGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGG--SADRCIKFWNTNTGARIDSVDTG 387 (484)
T ss_pred --CCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCC--CcccEEEEEEcCCCcEecccccC
Confidence 678999999999999999988899999999999999999999 4557777764 46889999999999999887764
Q ss_pred CCcceEEEEEeCCCCEEEE--EeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 584 RKKSNGVVQFDTTQNHFLA--VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
. .|..+.|++..+.+++ |..++.|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-+.
T Consensus 388 s--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~--RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 388 S--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTS--RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred C--ceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcc--eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 4 5999999999888887 44788999999999998888887654 8999999999999999999999999998654
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=249.56 Aligned_cols=351 Identities=16% Similarity=0.203 Sum_probs=267.3
Q ss_pred cCCCEEEEEECCCeEEEEeecCCccc---ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC--ceeEE
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDL---RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG--RKLFN 489 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~---~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~--~~~~~ 489 (1101)
|.++||.+|+.||.|++|++...... .....++.|.+.|++++...+++ .|+|+|.|-+|++|+ ..+ -++.+
T Consensus 35 ~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~~--tlIS~SsDtTVK~W~~~~~~~~c~st 112 (735)
T KOG0308|consen 35 PNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNGK--TLISASSDTTVKVWNAHKDNTFCMST 112 (735)
T ss_pred CCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCCC--ceEEecCCceEEEeecccCcchhHhh
Confidence 47889999999999999998754331 11336789999999999999998 799999999999999 555 67889
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----------ecc-CCCCceEEEEEccCCCEEEEeec
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYD-APGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~-~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+..|.+.|.|+++. ..+...+++||.|+.|.+||++++.... .+. ++...|++++..+.|..+++|+.
T Consensus 113 ir~H~DYVkcla~~-ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgt 191 (735)
T KOG0308|consen 113 IRTHKDYVKCLAYI-AKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGT 191 (735)
T ss_pred hhcccchheeeeec-ccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCc
Confidence 99999999999983 2255799999999999999999774311 122 56668999999999988888886
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
++.|++||.++++.+..+.||.. .|..+..++||..+++++.||+|++||+...+++.++..|.. .|+++..+
T Consensus 192 ----ek~lr~wDprt~~kimkLrGHTd-NVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e--~VWaL~~~ 264 (735)
T KOG0308|consen 192 ----EKDLRLWDPRTCKKIMKLRGHTD-NVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKE--GVWALQSS 264 (735)
T ss_pred ----ccceEEeccccccceeeeecccc-ceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccC--ceEEEeeC
Confidence 88899999999999999999998 899999999999999999999999999999999999988765 69999999
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
|+=..+++|+.||.|..=|+.+.........
T Consensus 265 ~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick------------------------------------------------- 295 (735)
T KOG0308|consen 265 PSFTHVYSGGRDGNIYRTDLRNPAKSTLICK------------------------------------------------- 295 (735)
T ss_pred CCcceEEecCCCCcEEecccCCchhheEeec-------------------------------------------------
Confidence 9999999999999999988876422221111
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
...+|..+........+.+++.|+.|+-|....
T Consensus 296 -----------------~daPv~~l~~~~~~~~~WvtTtds~I~rW~~~~------------------------------ 328 (735)
T KOG0308|consen 296 -----------------EDAPVLKLHLHEHDNSVWVTTTDSSIKRWKLEP------------------------------ 328 (735)
T ss_pred -----------------CCCchhhhhhccccCCceeeeccccceecCCcc------------------------------
Confidence 223334444444444456777888888885321
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
..++++.|++.....+....+.+... .+-..+.| ..+|..-+.-. |.+.+.+-...|.+.+||+-.+
T Consensus 329 ----------~~~l~~s~~~~~~~T~~~~~~~~~~~-tp~~vi~G-g~ai~k~~mL~-dkRhVlTkDa~gnv~lwDIl~~ 395 (735)
T KOG0308|consen 329 ----------DIALSVSGDLDFFSTDSNNHSCDLTN-TPDSVIPG-GAAIKKHAMLN-DKRHVLTKDAKGNVALWDILAC 395 (735)
T ss_pred ----------ccccccCCCCCcccccCCCccccccC-CCceeccC-chhhhhhhhhc-CcceEeeecCCCCEEEEEeeee
Confidence 11444455544444444444444321 22222332 23355555555 8899999999999999999887
Q ss_pred eEEEeec
Q 001319 879 EVKSKLK 885 (1101)
Q Consensus 879 ~~~~~~~ 885 (1101)
..+..+.
T Consensus 396 ~~~~d~g 402 (735)
T KOG0308|consen 396 VKVEDFG 402 (735)
T ss_pred eehhhcc
Confidence 7665553
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.6e-27 Score=218.38 Aligned_cols=283 Identities=18% Similarity=0.242 Sum_probs=224.9
Q ss_pred EEEEEecC--CceEEEEEe-----ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CC
Q 001319 348 ISMDFHPS--HQTLLLVGS-----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GN 419 (1101)
Q Consensus 348 ~~v~fspd--g~~llasg~-----~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~ 419 (1101)
.++.|||- ++..+|++. ..|++.|-++..++.+.. +. --.-.+.+..++||++ ..
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e--~~---------------s~d~~D~LfdV~Wse~~e~ 74 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQE--CQ---------------SYDTEDGLFDVAWSENHEN 74 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEE--EE---------------eeecccceeEeeecCCCcc
Confidence 57788885 443333432 367899999864443321 11 1123568999999995 56
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
.+++++.||++++||... .-.++..++.|...|.++.|++-.++ .+++++.|++|++|+ ..++.+.++.||...|.
T Consensus 75 ~~~~a~GDGSLrl~d~~~--~s~Pi~~~kEH~~EV~Svdwn~~~r~-~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy 151 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTM--PSKPIHKFKEHKREVYSVDWNTVRRR-IFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIY 151 (311)
T ss_pred eEEEEecCceEEEeccCC--CCcchhHHHhhhhheEEeccccccce-eEEeeccCCceEeecCCCCcceEeecCCccEEE
Confidence 778889999999999543 23445578899999999999998776 677779999999999 88899999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC-EEEEeecCCCCCceEEEEeCCCC-ee
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESEG-TI 576 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~ 576 (1101)
...|+|. ..+++++++.|+++++||++.......+..|...+.++.|+.-.. .+++++. |+.|+.||++.- .+
T Consensus 152 ~a~~sp~-~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~v----d~~vr~wDir~~r~p 226 (311)
T KOG0277|consen 152 QAAFSPH-IPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGV----DNLVRGWDIRNLRTP 226 (311)
T ss_pred EEecCCC-CCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCC----CceEEEEehhhcccc
Confidence 9999987 457999999999999999999888888899998999999998555 5556654 999999999874 46
Q ss_pred EEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCC-eeeEeeccCCCCCCCCeeEEec-CCCEEEEEEcCCcE
Q 001319 577 KRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGF 653 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i 653 (1101)
+..+.+|.- .|..+.|+|.. ..|++++.|-+++|||...+ ..+.+...|. .-|..+.||+ ++.++|+++-|+.+
T Consensus 227 l~eL~gh~~-AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~Ht--EFv~g~Dws~~~~~~vAs~gWDe~l 303 (311)
T KOG0277|consen 227 LFELNGHGL-AVRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHT--EFVCGLDWSLFDPGQVASTGWDELL 303 (311)
T ss_pred ceeecCCce-EEEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccc--eEEeccccccccCceeeecccccce
Confidence 677777765 89999999964 56788999999999998854 3445555443 3678899988 67899999999999
Q ss_pred EEEEc
Q 001319 654 KILAN 658 (1101)
Q Consensus 654 ~iwd~ 658 (1101)
+||+.
T Consensus 304 ~Vw~p 308 (311)
T KOG0277|consen 304 YVWNP 308 (311)
T ss_pred eeecc
Confidence 99984
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.1e-25 Score=230.36 Aligned_cols=597 Identities=17% Similarity=0.210 Sum_probs=345.7
Q ss_pred CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce--e----EEeecCCcCeEEEecccCCCccE
Q 001319 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK--L----FNFEGHEAPVYSICPHHKENIQF 510 (1101)
Q Consensus 438 ~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~--~----~~~~~h~~~v~~v~~~~~~~~~~ 510 (1101)
|+..+.+..+.+|.+.|+++.|+|-... +|++|+.|..|+||. ..|-. + ..+.+..-.|.++.|++..|| +
T Consensus 66 Gr~~r~i~~l~~H~d~VtDl~FspF~D~-LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDg-i 143 (1012)
T KOG1445|consen 66 GRRTRDIGILAAHGDQVTDLGFSPFADE-LLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADG-I 143 (1012)
T ss_pred CccccccceeecccceeeccCccccchh-hhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCc-e
Confidence 3344455568899999999999996555 799999999999999 43321 1 122333446889999998876 4
Q ss_pred EEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcceE
Q 001319 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNG 589 (1101)
Q Consensus 511 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~ 589 (1101)
+ ..+..|++++||+.+.+....+..|...|.++.|+.||+.+++.+. +..|+|||.+. ++.++...+|.+..-.
T Consensus 144 l-~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscK----dkqirifDPRa~~~piQ~te~H~~~rds 218 (1012)
T KOG1445|consen 144 L-ASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCK----DKQIRIFDPRASMEPIQTTEGHGGMRDS 218 (1012)
T ss_pred E-EeccCceEEEEEcccCceeecccCCchhhhccccccCCceEeeecC----CcceEEeCCccCCCccccccccccchhh
Confidence 4 4556799999999999999999999999999999999999999874 88999999875 6788888888875566
Q ss_pred EEEEeCCCCEEEEEeCC----CcEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEcccccc
Q 001319 590 VVQFDTTQNHFLAVGED----SQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLR 663 (1101)
Q Consensus 590 ~~~~~~~~~~l~~~~~d----g~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~ 663 (1101)
.+.|..+-.+|++.|.+ ..|++||.+. +..+.++...... .|.---|.||.++|+.++ .+.++..+.+.....
T Consensus 219 Rv~w~Gn~~rlisTGF~~~R~reV~~~Dtr~f~~p~~tleld~st-GvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~qP 297 (1012)
T KOG1445|consen 219 RVLWAGNWERLISTGFTTKRIREVRAYDTRKFGAPVHTLELDSST-GVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQP 297 (1012)
T ss_pred eeeeccchhhhhhcccchhhheeeeeeeccccCCcceeEEeeccc-ceEeeeecCCCceEEEecCCcceEEEEEecCCCc
Confidence 68887766688887643 5799999876 4455555544332 345556888888777655 467787777765432
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceE----------------------------
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII---------------------------- 715 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~---------------------------- 715 (1101)
.+...-.+..+.. ....++-|....-+.. +++.+........++
T Consensus 298 yLs~v~~~tle~~---~~GA~lvpkral~VM~-----~EV~rvlQLt~~~ivPi~y~VPRksyrdFH~DLfPeT~G~~p~ 369 (1012)
T KOG1445|consen 298 YLSHVFELTLEEQ---TLGATLVPKRALHVMD-----GEVDRVLQLTKSSIVPIPYIVPRKSYRDFHSDLFPETRGAEPG 369 (1012)
T ss_pred chhhhhhhcchhh---hccceecchhhhhhcc-----hhhhhheecccCceeecccccchhhhhhhhhhhCccccCCccC
Confidence 2211111110000 0000000000000000 000000000000000
Q ss_pred ----EEEEEeCCCeEEEEcC-CCCCC-----------------------------------------------------c
Q 001319 716 ----LAEIVDSGQCRLVTMP-ESTDT-----------------------------------------------------S 737 (1101)
Q Consensus 716 ----l~~~~~~~~~~~~~~~-~~~~~-----------------------------------------------------~ 737 (1101)
-|.-.+......+.+. ....| .
T Consensus 370 ~~ageWlnG~Nq~vqKvSl~Pa~r~h~~~pp~~~P~p~~a~t~sf~~v~~ppaaP~~~~n~~~~~~~~Pd~~~qpaV~~~ 449 (1012)
T KOG1445|consen 370 CTAGEWLNGTNQVVQKVSLAPAQRSHSPPPPEPVPTPKVAQTPSFVPVPTPPAAPRPMSNNNSSSNNVPDVQEQPAVPKK 449 (1012)
T ss_pred cCccceecCccccccccccCchhccCCCCCCCCCCCcccccCCCCccccCCCCCCCccccccccccCCCccccCCCcCcc
Confidence 0000001111111110 00000 0
Q ss_pred ccEEEEEeec----Cc------ccEEEeecCCeEEEEE------ecCCC---------CC---C-CCCeee---------
Q 001319 738 SKVVRLLYTN----SA------VGLLALGSNGVQKLWK------WHRNE---------QN---P-SGKATA--------- 779 (1101)
Q Consensus 738 ~~i~~~~~s~----~~------~~l~~~~~dg~v~~w~------~~~~~---------~~---~-~~~~~~--------- 779 (1101)
..+..+.+-| .| ..=.+-+....+..-. ..... .+ + .++...
T Consensus 450 ~e~r~l~~~~~E~~~g~~~~~~dad~~~g~sS~~s~~~~~~~~~~kP~S~plt~~~s~~s~~~P~~~ksvPe~~~~~~g~ 529 (1012)
T KOG1445|consen 450 EEVRELDYRPYEKENGVHTPNADADSTQGNSSPISTISPEPVTIVKPASTPLTDSVSTPSVVGPAFGKSVPEQPPVNFGK 529 (1012)
T ss_pred hhhhhhcccccccccCccCCCcccccccCCCCCccccCCCcccccCCCCcccccccccccccCccccccCCCCCCcccCC
Confidence 0000000000 00 0000000000000000 00000 00 0 000000
Q ss_pred --ec------------------cccccccCCccceeec-----cCCCCCCCCEeEEEecCCCCeEEE---EcCCeEEEEE
Q 001319 780 --SA------------------VPQHWLPSSGLLMAND-----VAGVNLEEAVPCIALSKNDSYVMS---ATGGKISLFN 831 (1101)
Q Consensus 780 --~~------------------~~~~~~~~~~~~~~~~-----~~~~~~~~~v~~~~~s~dg~~la~---~~dg~i~vwd 831 (1101)
.. .+.-|.-..|...... +...+..-+-.+--|..+.+.+|+ |+.|.|.||+
T Consensus 530 ~~sat~~v~~s~s~r~~s~v~G~iSKFRH~~Gt~ghks~hi~NLrnln~~~PgEsnGfcan~~rvAVPL~g~gG~iai~e 609 (1012)
T KOG1445|consen 530 PISATNRVPLSQSVRPKSCVVGQISKFRHVDGTQGHKSAHISNLRNLNTRLPGESNGFCANNKRVAVPLAGSGGVIAIYE 609 (1012)
T ss_pred CccccccccccccccccceeeccchheeeccCccccchhhhhhhhcccccCCCccCceeeccceEEEEecCCCceEEEEE
Confidence 00 0000000001000000 000000111112224445556654 3478999999
Q ss_pred CCC-ceEE-EEeeC--CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-------eEEEeeccCCCCeeEEEEcCC-
Q 001319 832 MMT-FKVM-TTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-------EVKSKLKGHQKRITGLAFSTS- 899 (1101)
Q Consensus 832 ~~~-~~~~-~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-------~~~~~~~~h~~~V~~l~~s~d- 899 (1101)
+.. |++- ..+.+ ....|+.+.|.|.|...||+++.||.|++|.+..+ ..-..+.+|...|+.+.|+|-
T Consensus 610 l~~PGrLPDgv~p~l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLA 689 (1012)
T KOG1445|consen 610 LNEPGRLPDGVMPGLFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLA 689 (1012)
T ss_pred cCCCCCCCcccccccccCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchh
Confidence 864 2221 11111 24569999999999999999999999999999865 334678899999999999995
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCcee-eeEeccCC
Q 001319 900 LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMER-IRQWTPQD 977 (1101)
Q Consensus 900 ~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~-~~~~~~~~ 977 (1101)
...|++++.|-+|++||+.+++.... +.+|. ..|..++|||||+.+++ +.|++|+||+..+.+. +..-.+..
T Consensus 690 advLa~asyd~Ti~lWDl~~~~~~~~-----l~gHt-dqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv 763 (1012)
T KOG1445|consen 690 ADVLAVASYDSTIELWDLANAKLYSR-----LVGHT-DQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV 763 (1012)
T ss_pred hhHhhhhhccceeeeeehhhhhhhhe-----eccCc-CceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc
Confidence 46899999999999999999775433 34555 78999999999999998 7799999999887654 22222222
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCC----CcEEEEeCCCCcee--EeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCD----GNIGVFDADTLRLR--CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~d----g~i~vwd~~~~~~~--~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
...--.+.|.-||+++++.+-| ..|.+||..+.... ..... .. +- .++-=.|.++.+-+|+
T Consensus 764 --gtRgARi~wacdgr~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~l-Dv--------ap--s~LvP~YD~Ds~~lfl 830 (1012)
T KOG1445|consen 764 --GTRGARILWACDGRIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVL-DV--------AP--SPLVPHYDYDSNVLFL 830 (1012)
T ss_pred --cCcceeEEEEecCcEEEEecccccchhhhhhhhhhhccCCcceeeee-cc--------cC--ccccccccCCCceEEE
Confidence 2334567788899998876644 46889998875421 11110 00 00 0111224454466788
Q ss_pred EEECCCeEEEEeCCCCCC
Q 001319 1052 IGLTDGSVKVMEPSESEG 1069 (1101)
Q Consensus 1052 s~~~Dg~v~iWd~~~~~~ 1069 (1101)
||-.|..|..|++.-.+.
T Consensus 831 tGKGD~~v~~yEv~~esP 848 (1012)
T KOG1445|consen 831 TGKGDRFVNMYEVIYESP 848 (1012)
T ss_pred ecCCCceEEEEEecCCCc
Confidence 888999999999977663
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.3e-25 Score=215.32 Aligned_cols=281 Identities=15% Similarity=0.230 Sum_probs=228.7
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..+.|.++.|+++|.++ ++++.|.+++|||..+++.+.. +..+...|..++|......+.
T Consensus 13 ~~~~i~sl~fs~~G~~l-itss~dDsl~LYd~~~g~~~~t-------------------i~skkyG~~~~~Fth~~~~~i 72 (311)
T KOG1446|consen 13 TNGKINSLDFSDDGLLL-ITSSEDDSLRLYDSLSGKQVKT-------------------INSKKYGVDLACFTHHSNTVI 72 (311)
T ss_pred CCCceeEEEecCCCCEE-EEecCCCeEEEEEcCCCceeeE-------------------eecccccccEEEEecCCceEE
Confidence 36789999999999965 5678888999999999987753 555677888999988777777
Q ss_pred EEEC--CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 423 VAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 423 s~~~--d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
.++. |.+|+.-++.+.+.++ .+.||...|++++.+|-+. .++|++.|++|++|| ...++...+.-...+|
T Consensus 73 ~sStk~d~tIryLsl~dNkylR---YF~GH~~~V~sL~~sP~~d--~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~pi-- 145 (311)
T KOG1446|consen 73 HSSTKEDDTIRYLSLHDNKYLR---YFPGHKKRVNSLSVSPKDD--TFLSSSLDKTVRLWDLRVKKCQGLLNLSGRPI-- 145 (311)
T ss_pred EccCCCCCceEEEEeecCceEE---EcCCCCceEEEEEecCCCC--eEEecccCCeEEeeEecCCCCceEEecCCCcc--
Confidence 7776 8899999999999888 7889999999999999998 899999999999999 6677766665433344
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCC--eeeecc---CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYD---APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~---~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
++|.| .|-++|++.....|++||++... +...+. ......+.+.|||||++++.+.. .+.+++.|.-+|
T Consensus 146 ~AfDp--~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~----~s~~~~lDAf~G 219 (311)
T KOG1446|consen 146 AAFDP--EGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTN----ASFIYLLDAFDG 219 (311)
T ss_pred eeECC--CCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeC----CCcEEEEEccCC
Confidence 45544 67788888877799999998752 222222 23457899999999999999875 888999999999
Q ss_pred eeEEEecccCCcc--eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 575 TIKRTYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 575 ~~~~~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
..+.++.++.... ....+|+||++++++|+.||+|.+|+++++..+..+... ...++.++.|+|.-.++++++ ..
T Consensus 220 ~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~~fnP~~~mf~sa~--s~ 296 (311)
T KOG1446|consen 220 TVKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCVRFNPRYAMFVSAS--SN 296 (311)
T ss_pred cEeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCccccccCCceeeeeecC--ce
Confidence 9999998876532 245789999999999999999999999999999998875 345789999999877776665 56
Q ss_pred EEEEEcc
Q 001319 653 FKILANA 659 (1101)
Q Consensus 653 i~iwd~~ 659 (1101)
+.+|-..
T Consensus 297 l~fw~p~ 303 (311)
T KOG1446|consen 297 LVFWLPD 303 (311)
T ss_pred EEEEecc
Confidence 7777543
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.4e-26 Score=231.97 Aligned_cols=293 Identities=16% Similarity=0.231 Sum_probs=233.2
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecc----cccCccccccccccCCccEEEEEEccC
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM----AACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~----~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
.|.-.|.||+++||+++. .+++.+++|.=|++.+|+.... +|.. +....+.+... ++|...|.+++.|+|
T Consensus 140 ~H~~s~~~vals~d~~~~-fsask~g~i~kw~v~tgk~~~~----i~~~~ev~k~~~~~~k~~r-~~h~keil~~avS~D 213 (479)
T KOG0299|consen 140 KHQLSVTSVALSPDDKRV-FSASKDGTILKWDVLTGKKDRY----IIERDEVLKSHGNPLKESR-KGHVKEILTLAVSSD 213 (479)
T ss_pred cccCcceEEEeeccccce-eecCCCcceeeeehhcCccccc----ccccchhhhhccCCCCccc-ccccceeEEEEEcCC
Confidence 488899999999999965 7899999999999999885521 1111 11122223222 489999999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~ 496 (1101)
|+|||+|+.|..|.||+..+.+.++ .+.+|.+.|.+++|-.... -+++++.|++|++|+ .....+.++.||++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~---~~~ghr~~V~~L~fr~gt~--~lys~s~Drsvkvw~~~~~s~vetlyGHqd~ 288 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVK---VFKGHRGAVSSLAFRKGTS--ELYSASADRSVKVWSIDQLSYVETLYGHQDG 288 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhh---cccccccceeeeeeecCcc--ceeeeecCCceEEEehhHhHHHHHHhCCccc
Confidence 9999999999999999999998777 6889999999999987766 699999999999999 667778899999999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
|.+|..... .+.+-+|+.|+++++|++ ..+....+.++...+.|++|-.+ ..+++|+. +|.|.+|++...++
T Consensus 289 v~~IdaL~r--eR~vtVGgrDrT~rlwKi-~eesqlifrg~~~sidcv~~In~-~HfvsGSd----nG~IaLWs~~KKkp 360 (479)
T KOG0299|consen 289 VLGIDALSR--ERCVTVGGRDRTVRLWKI-PEESQLIFRGGEGSIDCVAFIND-EHFVSGSD----NGSIALWSLLKKKP 360 (479)
T ss_pred eeeechhcc--cceEEeccccceeEEEec-cccceeeeeCCCCCeeeEEEecc-cceeeccC----CceEEEeeecccCc
Confidence 999987543 355666669999999999 44556667778888999999655 56778875 89999999999988
Q ss_pred EEEecccCC-----------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCC----eeeEeeccCCCCCCCCeeEEecCC
Q 001319 577 KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 577 ~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
+.+....++ ..+++++..|..+.+++|+.+|.|++|-+..+ .++..+.. .+.|+.++|+++|
T Consensus 361 lf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i~~l~~ls~---~GfVNsl~f~~sg 437 (479)
T KOG0299|consen 361 LFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAINLLYSLSL---VGFVNSLAFSNSG 437 (479)
T ss_pred eeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCccccceeeeccc---ccEEEEEEEccCC
Confidence 877653221 15778999999999999999999999998876 34444443 3468999999999
Q ss_pred CEEEEEE-cCCcEEEE
Q 001319 642 NLLAVTT-ADNGFKIL 656 (1101)
Q Consensus 642 ~~l~~~~-~d~~i~iw 656 (1101)
+++++|. ....+--|
T Consensus 438 k~ivagiGkEhRlGRW 453 (479)
T KOG0299|consen 438 KRIVAGIGKEHRLGRW 453 (479)
T ss_pred CEEEEeccccccccee
Confidence 9777663 34444444
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.1e-26 Score=235.46 Aligned_cols=286 Identities=15% Similarity=0.267 Sum_probs=237.3
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
..+.|.++.|+|...+=++.+..-.+.+|+.... ..... +. .....+.++.|-.|
T Consensus 25 e~~~vssl~fsp~~P~d~aVt~S~rvqly~~~~~----------------------~~~k~-~s--rFk~~v~s~~fR~D 79 (487)
T KOG0310|consen 25 EHNSVSSLCFSPKHPYDFAVTSSVRVQLYSSVTR----------------------SVRKT-FS--RFKDVVYSVDFRSD 79 (487)
T ss_pred ccCcceeEecCCCCCCceEEecccEEEEEecchh----------------------hhhhh-HH--hhccceeEEEeecC
Confidence 6678999999998877666776777888764321 11110 11 26778999999999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEE
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 894 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 894 (1101)
|+++|+|+ .|.|+|||+.+...++.+.+|..++..+.|+|+++..+++|+.|+.+++||+.+......+.+|++.|.+.
T Consensus 80 G~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g 159 (487)
T KOG0310|consen 80 GRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCG 159 (487)
T ss_pred CeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEee
Confidence 99999999 79999999888778889999999999999999999999999999999999999999877999999999999
Q ss_pred EEcCCC-CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEe
Q 001319 895 AFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 895 ~~s~d~-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~ 973 (1101)
+|+|-. ..++|||.||+|++||+.+.. .......-+ .+|..+.+-|.|..+++++...++|||+.+|......
T Consensus 160 ~~~~~~~hivvtGsYDg~vrl~DtR~~~---~~v~elnhg---~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~qll~~ 233 (487)
T KOG0310|consen 160 DISPANDHIVVTGSYDGKVRLWDTRSLT---SRVVELNHG---CPVESVLALPSGSLIASAGGNSVKVWDLTTGGQLLTS 233 (487)
T ss_pred ccccCCCeEEEecCCCceEEEEEeccCC---ceeEEecCC---CceeeEEEcCCCCEEEEcCCCeEEEEEecCCceehhh
Confidence 999964 489999999999999998853 111222112 6899999999999999999999999999966654443
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1053 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~ 1053 (1101)
... |...|+|+++..++..|++|+-|+.|+|||+.+.+.+..+.- .. .+++++-+| |+..++.|
T Consensus 234 ~~~--H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~~~-----------~~--pvLsiavs~-dd~t~viG 297 (487)
T KOG0310|consen 234 MFN--HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSWKY-----------PG--PVLSIAVSP-DDQTVVIG 297 (487)
T ss_pred hhc--ccceEEEEEeecCCceEeecccccceEEEEccceEEEEeeec-----------cc--ceeeEEecC-CCceEEEe
Confidence 332 489999999999999999999999999999999999988873 33 346888889 78999999
Q ss_pred ECCCeEEEEeCCCCC
Q 001319 1054 LTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1054 ~~Dg~v~iWd~~~~~ 1068 (1101)
..||.+.+=+....+
T Consensus 298 msnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 298 MSNGLVSIRRREVKK 312 (487)
T ss_pred cccceeeeehhhccc
Confidence 999999988766555
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.7e-26 Score=234.94 Aligned_cols=295 Identities=16% Similarity=0.234 Sum_probs=227.2
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
..|...|..+++.|.|.++++++-|..|++||++........ .....+ .....|.++.||
T Consensus 164 ~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~------------------fr~l~P--~E~h~i~sl~ys 223 (641)
T KOG0772|consen 164 KHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRS------------------FRQLQP--CETHQINSLQYS 223 (641)
T ss_pred cCCceEEEEeeecCCCceeeeccccceEEEEecccccccchh------------------hhccCc--ccccccceeeec
Confidence 348888999999999999999999999999998754221110 000011 256679999999
Q ss_pred CCCCeEEEEc-CCeEEEEECCCceEEEE------------eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 814 KNDSYVMSAT-GGKISLFNMMTFKVMTT------------FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~~~~~~~~------------~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
+.|..|++.+ ....+|+|-...+.... .++|...++|.+|+|.....+++++.||+++||++...+.
T Consensus 224 ~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~ 303 (641)
T KOG0772|consen 224 VTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS 303 (641)
T ss_pred CCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchh
Confidence 9998777766 67899999876554433 3468889999999998788899999999999999986532
Q ss_pred -EEee-----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCC-CCcceEEEcCCCCEEEE
Q 001319 881 -KSKL-----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP-TGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 881 -~~~~-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~ 953 (1101)
+..+ .+-.-+++.++|++||+++|.|..||.|.+|+..+........+ ...|.. ..++++.||+||++|++
T Consensus 304 q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~v--k~AH~~g~~Itsi~FS~dg~~LlS 381 (641)
T KOG0772|consen 304 QLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKV--KDAHLPGQDITSISFSYDGNYLLS 381 (641)
T ss_pred heeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEe--eeccCCCCceeEEEeccccchhhh
Confidence 2222 23345689999999999999999999999999866544433333 333332 58999999999999999
Q ss_pred -EeCCeEEEEEcCCcee-eeEeccCCCCCCCEEEEEEccCCCEEEEEe------CCCcEEEEeCCCCceeEeeCCCCcCC
Q 001319 954 -VHETQLAIYDASKMER-IRQWTPQDALSAPISCAVYSCNSQLVFATF------CDGNIGVFDADTLRLRCYIAPSTYLS 1025 (1101)
Q Consensus 954 -~~d~~i~v~d~~~~~~-~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~ 1025 (1101)
+.|+.+++||+...+. +..+... ....+-+..+||||.++|++|. ..|.+.+||..+.+.+..+.-
T Consensus 382 Rg~D~tLKvWDLrq~kkpL~~~tgL-~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i----- 455 (641)
T KOG0772|consen 382 RGFDDTLKVWDLRQFKKPLNVRTGL-PTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDI----- 455 (641)
T ss_pred ccCCCceeeeeccccccchhhhcCC-CccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEecC-----
Confidence 7899999999997654 3333322 2256678999999999999976 467899999999999998873
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1026 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1026 ~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
....++.+.|+| .-+.|+.|+.||+++++--
T Consensus 456 -------~~aSvv~~~Whp-kLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 456 -------STASVVRCLWHP-KLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred -------CCceEEEEeecc-hhhheeeecCCCceEEEEC
Confidence 244667899999 6888889999999988643
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.9e-26 Score=236.01 Aligned_cols=302 Identities=18% Similarity=0.265 Sum_probs=233.5
Q ss_pred CCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE
Q 001319 333 LPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 333 ~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
.|......+. |+..|.++++.|.|.+ +++|+.|.+|++||+.....-. ..|+. +.......|.+
T Consensus 155 IP~shEi~l~hgtk~Vsal~~Dp~GaR-~~sGs~Dy~v~~wDf~gMdas~-~~fr~-------------l~P~E~h~i~s 219 (641)
T KOG0772|consen 155 IPGSHEIQLKHGTKIVSALAVDPSGAR-FVSGSLDYTVKFWDFQGMDASM-RSFRQ-------------LQPCETHQINS 219 (641)
T ss_pred CCccceEeccCCceEEEEeeecCCCce-eeeccccceEEEEecccccccc-hhhhc-------------cCcccccccce
Confidence 4444555555 6789999999999986 4899999999999998754332 11221 23445678999
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcc---------cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSND---------LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~---------~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd- 481 (1101)
+.||+.|..|++.+....++|+|-...+. ++-+..-+||...++|.+|.|+.+. .++|++.||+++|||
T Consensus 220 l~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~-~FlT~s~DgtlRiWdv 298 (641)
T KOG0772|consen 220 LQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKE-EFLTCSYDGTLRIWDV 298 (641)
T ss_pred eeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCccc-ceEEecCCCcEEEEec
Confidence 99999999999998888999999875432 2333356799999999999999887 899999999999999
Q ss_pred cCC-ceeEEee-----cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee---eeccCCCC--ceEEEEEccCC
Q 001319 482 LSG-RKLFNFE-----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGH--WCTTMLYSADG 550 (1101)
Q Consensus 482 ~~~-~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~--~v~~~~~s~d~ 550 (1101)
.+. +.+..++ +..-+++.++|++ +|.+|++|..||.|.+|+....... .....|.. .|+|+.||+||
T Consensus 299 ~~~k~q~qVik~k~~~g~Rv~~tsC~~nr--dg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg 376 (641)
T KOG0772|consen 299 NNTKSQLQVIKTKPAGGKRVPVTSCAWNR--DGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDG 376 (641)
T ss_pred CCchhheeEEeeccCCCcccCceeeecCC--CcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEecccc
Confidence 333 3333332 2344688888977 7789999999999999997554332 22334443 89999999999
Q ss_pred CEEEEeecCCCCCceEEEEeCCCC-eeEEEecccCC-cceEEEEEeCCCCEEEEEe------CCCcEEEEECCCCeeeEe
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTS 622 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~ 622 (1101)
++|++=+. |..+++||++.. +++....+... ..-+.++|+|+.+.+++|. ..|.+++||..+...+..
T Consensus 377 ~~LlSRg~----D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~k 452 (641)
T KOG0772|consen 377 NYLLSRGF----DDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYK 452 (641)
T ss_pred chhhhccC----CCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEE
Confidence 99999775 899999999875 45555444322 2345589999999999875 457899999999999998
Q ss_pred eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
+.... ..|..+.|+|.-+.|++|+.||++++|--
T Consensus 453 i~i~~--aSvv~~~WhpkLNQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 453 IDIST--ASVVRCLWHPKLNQIFAGSGDGTAHVYYD 486 (641)
T ss_pred ecCCC--ceEEEEeecchhhheeeecCCCceEEEEC
Confidence 87764 37889999999999999999999999753
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.2e-25 Score=212.56 Aligned_cols=293 Identities=17% Similarity=0.277 Sum_probs=243.2
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
+.+....+.|.++.|+. +|.++++++.|.++++||..++.....+..+.-.+..++|......++.++. ..|..|+
T Consensus 8 k~f~~~~~~i~sl~fs~--~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sSt--k~d~tIr 83 (311)
T KOG1446|consen 8 KVFRETNGKINSLDFSD--DGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSST--KEDDTIR 83 (311)
T ss_pred cccccCCCceeEEEecC--CCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccC--CCCCceE
Confidence 44555677899999976 6789999999999999999999999998888888999999888888877765 3577899
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
..++.+.+.++.|.||.+ .|..++.+|-+..+++++.|++|++||++..++...+...+. ..++|+|+|-++|++
T Consensus 84 yLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~----pi~AfDp~GLifA~~ 158 (311)
T KOG1446|consen 84 YLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR----PIAAFDPEGLIFALA 158 (311)
T ss_pred EEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCC----cceeECCCCcEEEEe
Confidence 999999999999999998 899999999999999999999999999998888777765543 678999999999999
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
...+.|++||++.-. ..++.
T Consensus 159 ~~~~~IkLyD~Rs~d-------kgPF~----------------------------------------------------- 178 (311)
T KOG1446|consen 159 NGSELIKLYDLRSFD-------KGPFT----------------------------------------------------- 178 (311)
T ss_pred cCCCeEEEEEecccC-------CCCce-----------------------------------------------------
Confidence 988899999986431 00000
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCE
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 807 (1101)
. |. .. .+...+.
T Consensus 179 --------------t--f~--------i~--------------------------------------------~~~~~ew 190 (311)
T KOG1446|consen 179 --------------T--FS--------IT--------------------------------------------DNDEAEW 190 (311)
T ss_pred --------------e--Ec--------cC--------------------------------------------CCCccce
Confidence 0 00 00 0134557
Q ss_pred eEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCe---eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 808 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS---TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i---~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
+.+.|||||++++.+. .+.+++.|.-+|..+.++..+...- ...+|+| |++++++|+.||+|.+|++.+++.+..
T Consensus 191 ~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftP-ds~Fvl~gs~dg~i~vw~~~tg~~v~~ 269 (311)
T KOG1446|consen 191 TDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTP-DSKFVLSGSDDGTIHVWNLETGKKVAV 269 (311)
T ss_pred eeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECC-CCcEEEEecCCCcEEEEEcCCCcEeeE
Confidence 7899999999988887 6789999999999999988766543 5789999 999999999999999999999999999
Q ss_pred ecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 884 LKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 884 ~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
+.+ +.+++.++.|+|.-..++|+ +..+-+|-....
T Consensus 270 ~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~~ 305 (311)
T KOG1446|consen 270 LRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDED 305 (311)
T ss_pred ecCCCCCCccccccCCceeeeeec--CceEEEEecccc
Confidence 998 79999999999986666665 456888876643
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=9.2e-26 Score=211.71 Aligned_cols=251 Identities=16% Similarity=0.200 Sum_probs=211.9
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+.+.+|...|.+++|+-||..||+|+.|+++.+|+++..+... .....+|.+.|-.++|.|.... .+++++.|++|++
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~-~~~~~gh~~svdql~w~~~~~d-~~atas~dk~ir~ 91 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRK-ELVYRGHTDSVDQLCWDPKHPD-LFATASGDKTIRI 91 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhh-hhcccCCCcchhhheeCCCCCc-ceEEecCCceEEE
Confidence 3477899999999999999999999999999999999875443 2357799999999999998776 7999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| ..++++.......+.+. ++|+| +|.+++.++.|..|.+.|.++.+....... ...+..++|+.++.+++...
T Consensus 92 wd~r~~k~~~~i~~~~eni~-i~wsp--~g~~~~~~~kdD~it~id~r~~~~~~~~~~-~~e~ne~~w~~~nd~Fflt~- 166 (313)
T KOG1407|consen 92 WDIRSGKCTARIETKGENIN-ITWSP--DGEYIAVGNKDDRITFIDARTYKIVNEEQF-KFEVNEISWNNSNDLFFLTN- 166 (313)
T ss_pred EEeccCcEEEEeeccCcceE-EEEcC--CCCEEEEecCcccEEEEEecccceeehhcc-cceeeeeeecCCCCEEEEec-
Confidence 99 99999988875555554 56666 678999999999999999887766554432 23467788887777666543
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
|.|.|.|.....-+++..+..|.. ...++.|+|+|+++++|+.|..+.+||+...-++..+....- +|..+.||
T Consensus 167 ---GlG~v~ILsypsLkpv~si~AH~s-nCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw--pVRTlSFS 240 (313)
T KOG1407|consen 167 ---GLGCVEILSYPSLKPVQSIKAHPS-NCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW--PVRTLSFS 240 (313)
T ss_pred ---CCceEEEEeccccccccccccCCc-ceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC--ceEEEEec
Confidence 478999999999999999999986 677899999999999999999999999998877777765543 89999999
Q ss_pred cCCCEEEEEEcCCcEEEEEcccccc
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
.||++||+++.|..|-|=++++|.+
T Consensus 241 ~dg~~lASaSEDh~IDIA~vetGd~ 265 (313)
T KOG1407|consen 241 HDGRMLASASEDHFIDIAEVETGDR 265 (313)
T ss_pred cCcceeeccCccceEEeEecccCCe
Confidence 9999999999999999888888743
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.6e-25 Score=216.09 Aligned_cols=240 Identities=20% Similarity=0.285 Sum_probs=207.3
Q ss_pred CCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC--EEEEEeCCCcEEEEEeecc
Q 001319 802 NLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g~~dg~v~iwd~~~~ 878 (1101)
.|...++++|+ ++.++|+|+ |.+|+|||+.+...+..+-.|.+.|+++.|.+ ... .|.+|+.||.|.+|+....
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~-~~S~shLlS~sdDG~i~iw~~~~W 117 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYP-PLSKSHLLSGSDDGHIIIWRVGSW 117 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecC-CcchhheeeecCCCcEEEEEcCCe
Confidence 59999999998 589999998 89999999999999999999999999999998 554 7889999999999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCe
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQ 958 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~ 958 (1101)
+++..+++|.+.|+.++.+|.+++.++.+.|+.+++||+-.|+.-....+. ...+.+.|+|.|.+++++....
T Consensus 118 ~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~-------~~at~v~w~~~Gd~F~v~~~~~ 190 (362)
T KOG0294|consen 118 ELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLK-------NKATLVSWSPQGDHFVVSGRNK 190 (362)
T ss_pred EEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccC-------CcceeeEEcCCCCEEEEEeccE
Confidence 999999999999999999999999999999999999999998754433332 3445599999999999999999
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceE
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1038 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 1038 (1101)
|-+|.+++-.....+.. ...+.++.|- ++..|++|..|+.|.+||-++....+.+.. |...+..+
T Consensus 191 i~i~q~d~A~v~~~i~~----~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~A----------H~~RVK~i 255 (362)
T KOG0294|consen 191 IDIYQLDNASVFREIEN----PKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLA----------HENRVKDI 255 (362)
T ss_pred EEEEecccHhHhhhhhc----cccceeeeec-CCceEEEecCCceEEEeccCCCccceeeec----------chhheeee
Confidence 99999998887777655 4567788876 567899999999999999999777776653 77766644
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 1039 VVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1039 ~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
..--.| ++.+|+|+|.||.|+|||++..
T Consensus 256 ~~~~~~-~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 256 ASYTNP-EHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred EEEecC-CceEEEEeccCceEEEEEcccc
Confidence 443455 6889999999999999999876
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.6e-26 Score=240.15 Aligned_cols=287 Identities=21% Similarity=0.279 Sum_probs=234.2
Q ss_pred EEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCC
Q 001319 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH 428 (1101)
Q Consensus 349 ~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~ 428 (1101)
++..++.+.+.|.+|+.||.|++|++..-......+ ....+..|.++|..++..-+|+.|++++.|-
T Consensus 29 ~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~-------------~~asme~HsDWVNDiiL~~~~~tlIS~SsDt 95 (735)
T KOG0308|consen 29 ALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTP-------------YIASMEHHSDWVNDIILCGNGKTLISASSDT 95 (735)
T ss_pred hccccCCCCceEEecCCCceEEEeccccccCCcccc-------------hhhhhhhhHhHHhhHHhhcCCCceEEecCCc
Confidence 444554433345899999999999987644322111 0124778999999999999999999999999
Q ss_pred eEEEEeecCCcccccceeeecccCcEEEEEE-ecCCCceEEEEecCCceEEEEE-cCC--cee--------EEee-cCCc
Q 001319 429 LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-AYPNKLLCVVTCGDDKLIKVWE-LSG--RKL--------FNFE-GHEA 495 (1101)
Q Consensus 429 ~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~-s~d~~~~~l~s~~~d~~v~iwd-~~~--~~~--------~~~~-~h~~ 495 (1101)
+|++|+...+. .....++..|.+.|.|+++ .++.. ++||||-|+.|.+|| .+| +.+ ..+. |+..
T Consensus 96 TVK~W~~~~~~-~~c~stir~H~DYVkcla~~ak~~~--lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~ 172 (735)
T KOG0308|consen 96 TVKVWNAHKDN-TFCMSTIRTHKDYVKCLAYIAKNNE--LVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKD 172 (735)
T ss_pred eEEEeecccCc-chhHhhhhcccchheeeeecccCce--eEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCcc
Confidence 99999998874 1222367889999999999 66666 899999999999999 655 222 2333 7888
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|++++.++ .|..+++|+..+.+++||.++.+....+.+|...|..+..++||+.+++++. |++|++||+...+
T Consensus 173 siYSLA~N~--t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sS----DgtIrlWdLgqQr 246 (735)
T KOG0308|consen 173 SIYSLAMNQ--TGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASS----DGTIRLWDLGQQR 246 (735)
T ss_pred ceeeeecCC--cceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCC----CceEEeeeccccc
Confidence 999999866 5689999999999999999999999999999999999999999999999997 9999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
++.++..|.. .+.++..+|+-.++++|+.||.|+.-|+++......+--..+ +|..+..+...+-+-+++.|+.|+-
T Consensus 247 Cl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlick~da--Pv~~l~~~~~~~~~WvtTtds~I~r 323 (735)
T KOG0308|consen 247 CLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLICKEDA--PVLKLHLHEHDNSVWVTTTDSSIKR 323 (735)
T ss_pred eeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCCchhheEeecCCC--chhhhhhccccCCceeeecccccee
Confidence 9999999998 699999999999999999999999999998543333322222 6777877766666688888999999
Q ss_pred EEccc
Q 001319 656 LANAI 660 (1101)
Q Consensus 656 wd~~~ 660 (1101)
|....
T Consensus 324 W~~~~ 328 (735)
T KOG0308|consen 324 WKLEP 328 (735)
T ss_pred cCCcc
Confidence 97653
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=232.05 Aligned_cols=286 Identities=20% Similarity=0.295 Sum_probs=238.5
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+..|.+.|..+.|-++...|++|+.|..|++|++..++ .....+|.|-.++|++++|.++++ .+++++.|+.+++|
T Consensus 170 ~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k-~~~~~tLaGs~g~it~~d~d~~~~--~~iAas~d~~~r~W 246 (459)
T KOG0288|consen 170 VLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEK-SELISTLAGSLGNITSIDFDSDNK--HVIAASNDKNLRLW 246 (459)
T ss_pred hhhccccccceeEEccCcchhhhcchhhhhhhhhcccch-hhhhhhhhccCCCcceeeecCCCc--eEEeecCCCceeee
Confidence 367799999999999999999999999999999999877 223337888899999999999999 78889999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
+ .+.+...++.||++.|+++.|.... ..+++|+.|.+|+.||+....+..++. ....+..++.+ +..++++..
T Consensus 247 nvd~~r~~~TLsGHtdkVt~ak~~~~~--~~vVsgs~DRtiK~WDl~k~~C~kt~l-~~S~cnDI~~~--~~~~~SgH~- 320 (459)
T KOG0288|consen 247 NVDSLRLRHTLSGHTDKVTAAKFKLSH--SRVVSGSADRTIKLWDLQKAYCSKTVL-PGSQCNDIVCS--ISDVISGHF- 320 (459)
T ss_pred eccchhhhhhhcccccceeeehhhccc--cceeeccccchhhhhhhhhhheecccc-ccccccceEec--ceeeeeccc-
Confidence 9 8888999999999999999987643 349999999999999999876665543 33345555554 445556554
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC--CCCCCeeEE
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRF 637 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~ 637 (1101)
|+.|++||.++..+......+. .++++..++++..+++++.|.++.+.|+++.+....+...+- ....+.+.|
T Consensus 321 ---DkkvRfwD~Rs~~~~~sv~~gg--~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvf 395 (459)
T KOG0288|consen 321 ---DKKVRFWDIRSADKTRSVPLGG--RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVF 395 (459)
T ss_pred ---ccceEEEeccCCceeeEeecCc--ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEE
Confidence 8889999999999999988765 699999999999999999999999999999998888765432 234788999
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
||++.++++|+.||.|+||++.++ ++...+..
T Consensus 396 Spd~~YvaAGS~dgsv~iW~v~tg-KlE~~l~~----------------------------------------------- 427 (459)
T KOG0288|consen 396 SPDGSYVAAGSADGSVYIWSVFTG-KLEKVLSL----------------------------------------------- 427 (459)
T ss_pred CCCCceeeeccCCCcEEEEEccCc-eEEEEecc-----------------------------------------------
Confidence 999999999999999999999887 33222211
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
......|+++.|+|.|..+++++.++.+.+|
T Consensus 428 ----------------s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 428 ----------------STSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred ----------------CCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 1123379999999999999999999999998
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.8e-25 Score=222.11 Aligned_cols=283 Identities=17% Similarity=0.201 Sum_probs=244.6
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
..|.++...|... .+.+|+.|..+.++|..+++.+. +++||...|+.+.|+|+...++++
T Consensus 220 pgi~ald~~~s~~-~ilTGG~d~~av~~d~~s~q~l~-------------------~~~Gh~kki~~v~~~~~~~~v~~a 279 (506)
T KOG0289|consen 220 PGITALDIIPSSS-KILTGGEDKTAVLFDKPSNQILA-------------------TLKGHTKKITSVKFHKDLDTVITA 279 (506)
T ss_pred CCeeEEeecCCCC-cceecCCCCceEEEecchhhhhh-------------------hccCcceEEEEEEeccchhheeec
Confidence 4788888888744 56899999999999999888765 599999999999999999999999
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeec--CCcCeEEEe
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG--HEAPVYSIC 501 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~--h~~~v~~v~ 501 (1101)
+.|..|+||......+.. ....|.++|+.+...|.|. ||++++.|++..+.| .+|.++..... ..-.+++.+
T Consensus 280 Sad~~i~vws~~~~s~~~---~~~~h~~~V~~ls~h~tge--YllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~ 354 (506)
T KOG0289|consen 280 SADEIIRVWSVPLSSEPT---SSRPHEEPVTGLSLHPTGE--YLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAA 354 (506)
T ss_pred CCcceEEeeccccccCcc---ccccccccceeeeeccCCc--EEEEecCCceEEEEEccCCcEEEEEeeccccceeEEee
Confidence 999999999998776554 5678999999999999999 899999999999999 88888766553 233588999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
|+| ||.++.+|..|+.|++||+........+.+|.++|..++|+.+|-+|++++. |+.|++||++.-+...++.
T Consensus 355 fHp--DgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~ad----d~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 355 FHP--DGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAAD----DGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EcC--CceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEec----CCeEEEEEehhhcccceee
Confidence 988 7789999999999999999999999999999999999999999999999985 7789999999988888888
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
......+..+.|.+.|.+++.+|.|=+|++++-.+.........+.+.+..+++.|....+++++++.|..++++.+
T Consensus 429 l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 429 LDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeeecccceEEeeccchhheEEeec
Confidence 77766799999999999999999888888887655544333333333446789999999999999999999888754
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-25 Score=246.87 Aligned_cols=275 Identities=14% Similarity=0.201 Sum_probs=213.7
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC------------------------CC-----Ce------ee
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP------------------------SG-----KA------TA 779 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~------------------------~~-----~~------~~ 779 (1101)
.|.+.|.++-|++||++|+++|.||.|+||.+...+... .. .. ..
T Consensus 265 ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~~~~ 344 (712)
T KOG0283|consen 265 AHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRKGSQ 344 (712)
T ss_pred ccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccccccC
Confidence 599999999999999999999999999999987621100 00 00 00
Q ss_pred eccccccccCCccceeecc-CCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC
Q 001319 780 SAVPQHWLPSSGLLMANDV-AGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 858 (1101)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 858 (1101)
... .........+....+ .-.+|...|..+.||.++-+|-++-|.+|++|++....++..|. |..-|+|++|.|-|.
T Consensus 345 s~~-~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDD 422 (712)
T KOG0283|consen 345 SPC-VLLPLKAFVFSEKPFCEFKGHTADILDLSWSKNNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDD 422 (712)
T ss_pred Ccc-ccCCCccccccccchhhhhccchhheecccccCCeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCC
Confidence 000 011111111111111 11369999999999987654444449999999999999999997 899999999999999
Q ss_pred CEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC--C
Q 001319 859 NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT--P 936 (1101)
Q Consensus 859 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~--~ 936 (1101)
+++++|+-||.|+||++...+.+.-...+ .-|++++|.|||+..+.|+.+|.+++|+....+......+....+.. .
T Consensus 423 ryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~-~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~ 501 (712)
T KOG0283|consen 423 RYFISGSLDGKVRLWSISDKKVVDWNDLR-DLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQG 501 (712)
T ss_pred CcEeecccccceEEeecCcCeeEeehhhh-hhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccC
Confidence 99999999999999999988877655544 78999999999999999999999999999988777666665543322 1
Q ss_pred CCcceEEEcCCCC--EEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 937 TGDTRVQFNADQV--RMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 937 ~~v~~~~~s~d~~--~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
..|+.+.|.|... .|+++.|.+|+|||..+.+++..+.+.+. ...-....|+.||++|++|++|..|+||+++...
T Consensus 502 ~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n-~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 502 KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRN-TSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred ceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhccccc-CCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 4699999987654 77788999999999999999999887654 4445678899999999999999999999986543
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=248.33 Aligned_cols=236 Identities=18% Similarity=0.259 Sum_probs=209.4
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
.+...+.+..|. +.++++++.|++|++||..++..+.. .+.||.+.|++++|..-+. ++++|+.|.++++|| .
T Consensus 206 ~~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~~~~i~~--~l~GH~g~V~~l~~~~~~~--~lvsgS~D~t~rvWd~~ 279 (537)
T KOG0274|consen 206 TDDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNNGYLILT--RLVGHFGGVWGLAFPSGGD--KLVSGSTDKTERVWDCS 279 (537)
T ss_pred cCcchhhhheee--cCeEEecCCCceeEEeecccceEEEe--eccCCCCCceeEEEecCCC--EEEEEecCCcEEeEecC
Confidence 367788899888 67899999999999999999987763 3889999999999987455 899999999999999 9
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
+|.|+..+.+|.+.|.++...+ ..+++|+.|.+|++|+++++.....+.+|..+|.++... +.++++++.
T Consensus 280 sg~C~~~l~gh~stv~~~~~~~----~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~---- 349 (537)
T KOG0274|consen 280 TGECTHSLQGHTSSVRCLTIDP----FLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSY---- 349 (537)
T ss_pred CCcEEEEecCCCceEEEEEccC----ceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEec----
Confidence 9999999999999999998643 578889999999999999999999999899999999997 889999986
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC-eeeEeeccCCCCCCCCeeEEecCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
++.|.+||+.++++++.+.+|.. .|.++.+.+. +++++|+.|++|++||+.++ +++.++..+.. -+..+. ..+
T Consensus 350 d~~v~VW~~~~~~cl~sl~gH~~-~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~--~v~~l~--~~~ 423 (537)
T KOG0274|consen 350 DGTVKVWDPRTGKCLKSLSGHTG-RVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS--LVSSLL--LRD 423 (537)
T ss_pred CceEEEEEhhhceeeeeecCCcc-eEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCcc--cccccc--ccc
Confidence 88999999999999999999887 8888877765 89999999999999999999 89998887755 344444 368
Q ss_pred CEEEEEEcCCcEEEEEcccc
Q 001319 642 NLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++|++++.|++|++||..++
T Consensus 424 ~~Lvs~~aD~~Ik~WD~~~~ 443 (537)
T KOG0274|consen 424 NFLVSSSADGTIKLWDAEEG 443 (537)
T ss_pred ceeEeccccccEEEeecccC
Confidence 89999999999999998876
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.3e-25 Score=211.17 Aligned_cols=302 Identities=16% Similarity=0.218 Sum_probs=222.7
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccc-cccCCCcccccCcceeeeeeeccccccccCCCCCcceec
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR-AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 705 (1101)
+|...|++++|+.||+.|++++.|+.|++|++.+-..... .++.
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~----------------------------------- 128 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ----------------------------------- 128 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc-----------------------------------
Confidence 3445899999999999999999999999999876311110 0000
Q ss_pred cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee-cCCeEEEEEecCCCCCCCCCeeeecccc
Q 001319 706 SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQ 784 (1101)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-~dg~v~~w~~~~~~~~~~~~~~~~~~~~ 784 (1101)
.-..+..+.++|.||.+.++... ....+++|.+..... |...- ...
T Consensus 129 ----------------------------nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~d---G~~~~--~~v 175 (420)
T KOG2096|consen 129 ----------------------------NVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTD---GSGSH--HFV 175 (420)
T ss_pred ----------------------------cccCCCceEEEECCCcceEEEEEccCCEEEEEEeeeccc---CCCCc--ccc
Confidence 00223557788888887666554 456888887654321 11100 000
Q ss_pred ccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEE
Q 001319 785 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 863 (1101)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 863 (1101)
-||- -. +. ..|.-.+..+-+..+++++++++ |.+|.+|++. |+.+..+......-+..+.|| +|+++|+
T Consensus 176 ~~D~--~~-----f~-~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP-~GRFia~ 245 (420)
T KOG2096|consen 176 HIDN--LE-----FE-RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP-DGRFIAV 245 (420)
T ss_pred cccc--cc-----cc-hhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC-CCcEEEE
Confidence 1110 00 00 12666777888888999999998 7889999998 899998887777788899999 9999999
Q ss_pred EeCCCcEEEEEeec---c-----eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce-----EEee
Q 001319 864 GTEDSTIHIYNVRV---D-----EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV-----TIHI 930 (1101)
Q Consensus 864 g~~dg~v~iwd~~~---~-----~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~-----~~~~ 930 (1101)
++-.--|++|..-- | ..+..++||...|..++||++...++|.+.||++++||++-.-....- ....
T Consensus 246 ~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~ 325 (420)
T KOG2096|consen 246 SGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSA 325 (420)
T ss_pred ecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCc
Confidence 99999999999752 2 234678999999999999999999999999999999998642111110 0111
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 931 PAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 931 ~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
+.....+....+..+|.|..|+++....+++|..++++....+... |...|++++|++||+++++++ |..++|+.-
T Consensus 326 pl~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~--h~~~Is~is~~~~g~~~atcG-dr~vrv~~n 401 (420)
T KOG2096|consen 326 PLHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDI--HSTTISSISYSSDGKYIATCG-DRYVRVIRN 401 (420)
T ss_pred chhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHh--hcCceeeEEecCCCcEEeeec-ceeeeeecC
Confidence 1112224556899999999999999999999999999988777654 489999999999999999998 888888763
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.1e-25 Score=226.29 Aligned_cols=253 Identities=20% Similarity=0.253 Sum_probs=214.5
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccc--------------eee-ecccCcEEEEEEecCCCce
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH--------------SQI-DAHVGAVNDLAFAYPNKLL 466 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~--------------~~l-~~h~~~V~~l~~s~d~~~~ 466 (1101)
...|.-.|.+|+++||++++++++.+++|.=|++.+|+..+.+ ..- ++|...|.+++.++||+
T Consensus 138 ~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dgk-- 215 (479)
T KOG0299|consen 138 IGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDGK-- 215 (479)
T ss_pred eccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCCc--
Confidence 5679999999999999999999999999999999988743110 011 37889999999999999
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEE
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1101)
+|++|+.|..|.||+ .+.+.+..+.+|.+.|.+++|-... ..+++++.|+.|++|+++......++-+|...|.++.
T Consensus 216 ylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt--~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 216 YLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGT--SELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred EEEecCCCceEEEecCcccchhhcccccccceeeeeeecCc--cceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 899999999999999 9999999999999999999997543 5799999999999999999998889999999999999
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
...-++.+-+++. |.++++|++. -+....|.++.+ .+.+++|-. ..++++|+.+|.|.+|++.+.+++.+...
T Consensus 294 aL~reR~vtVGgr----DrT~rlwKi~-eesqlifrg~~~-sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGR----DRTVRLWKIP-EESQLIFRGGEG-SIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccc----cceeEEEecc-ccceeeeeCCCC-CeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 8888888777765 9999999994 344445666655 788888865 46899999999999999999888776542
Q ss_pred CCC----------CCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccc
Q 001319 626 EGG----------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1101)
Q Consensus 626 ~~~----------~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 665 (1101)
..+ ...|++++..|...++++|+.+|.|++|.+..+...+
T Consensus 367 AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g~r~i 416 (479)
T KOG0299|consen 367 AHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDGLRAI 416 (479)
T ss_pred cccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCCcccc
Confidence 211 1267899999999999999999999999998874433
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.7e-25 Score=238.13 Aligned_cols=258 Identities=17% Similarity=0.315 Sum_probs=222.0
Q ss_pred ccccCCCCcceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccccc-
Q 001319 327 TWSLDDLPRTVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD- 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~- 404 (1101)
+|+.. ...+..... +.+.|+++.|+++|++ ||+|..+|.|.|||....+.+.. +.+
T Consensus 201 lW~~~--s~~v~~l~~~~~~~vtSv~ws~~G~~-LavG~~~g~v~iwD~~~~k~~~~-------------------~~~~ 258 (484)
T KOG0305|consen 201 LWSAS--SGSVTELCSFGEELVTSVKWSPDGSH-LAVGTSDGTVQIWDVKEQKKTRT-------------------LRGS 258 (484)
T ss_pred EEecC--CCceEEeEecCCCceEEEEECCCCCE-EEEeecCCeEEEEehhhcccccc-------------------ccCC
Confidence 45444 444444444 3899999999999995 69999999999999988776652 566
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
|...|.+++|. +..+.+|+.|+.|..+|+...+.... .+.+|...|..++|++|+. ++++|+.|+.+.||| ..
T Consensus 259 h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~--~~~~H~qeVCgLkws~d~~--~lASGgnDN~~~Iwd~~~ 332 (484)
T KOG0305|consen 259 HASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVS--TLQGHRQEVCGLKWSPDGN--QLASGGNDNVVFIWDGLS 332 (484)
T ss_pred cCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhh--hhhcccceeeeeEECCCCC--eeccCCCccceEeccCCC
Confidence 99999999998 77899999999999999998876554 4889999999999999999 899999999999999 78
Q ss_pred CceeEEeecCCcCeEEEecccCCCccEEEEec--cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 484 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~--~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
..++..+..|.+.|.+++|+|-.. .+||+|+ .|++|++||..++.....+. .+..|.++.|++..+-++++.. .
T Consensus 333 ~~p~~~~~~H~aAVKA~awcP~q~-~lLAsGGGs~D~~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG--~ 408 (484)
T KOG0305|consen 333 PEPKFTFTEHTAAVKALAWCPWQS-GLLATGGGSADRCIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHG--Y 408 (484)
T ss_pred ccccEEEeccceeeeEeeeCCCcc-CceEEcCCCcccEEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecC--C
Confidence 888899999999999999999865 5888865 69999999999877776655 4556999999999988877643 3
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1101)
.+..|.||+..+.+.+..+.+|.. .|..++++|||..+++|+.|.++++|++-..
T Consensus 409 s~n~i~lw~~ps~~~~~~l~gH~~-RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 409 SENQITLWKYPSMKLVAELLGHTS-RVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCcEEEEeccccceeeeecCCcc-eeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 466899999999999999999998 6899999999999999999999999998764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.8e-24 Score=243.12 Aligned_cols=255 Identities=11% Similarity=0.125 Sum_probs=193.5
Q ss_pred EeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCEEEEEECCCeEEEEeecCCcc-
Q 001319 363 GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSND- 440 (1101)
Q Consensus 363 g~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~las~~~d~~i~vwd~~~~~~- 440 (1101)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +.+||+|+.|++|+|||+.++..
T Consensus 50 GG~~gvI~L~~~~r~~~v-------------------~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~ 110 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV-------------------IKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDES 110 (568)
T ss_pred CCceeEEEeeecCCCceE-------------------EEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcc
Confidence 556777888886554322 247899999999999996 89999999999999999986432
Q ss_pred c----ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEec
Q 001319 441 L----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1101)
Q Consensus 441 ~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~ 515 (1101)
. .....+.+|...|.+++|+|++.. ++++++.|++|+||| .+++.+..+. |...|.+++|++ +|.+|++++
T Consensus 111 ~~~i~~p~~~L~gH~~~V~sVaf~P~g~~-iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~Slswsp--dG~lLat~s 186 (568)
T PTZ00420 111 VKEIKDPQCILKGHKKKISIIDWNPMNYY-IMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNI--KGNLLSGTC 186 (568)
T ss_pred ccccccceEEeecCCCcEEEEEECCCCCe-EEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECC--CCCEEEEEe
Confidence 1 122357799999999999999874 568999999999999 7787777775 567899999987 668999999
Q ss_pred cCCeEEEEecCCCCeeeeccCCCCceEE-----EEEccCCCEEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcc-e
Q 001319 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTT-----MLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKS-N 588 (1101)
Q Consensus 516 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~-----~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~-v 588 (1101)
.|+.|++||++++.....+..|.+.+.+ ..|++++.++++++.++..++.|++||++. ++++..+..+.... +
T Consensus 187 ~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L 266 (568)
T PTZ00420 187 VGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPL 266 (568)
T ss_pred cCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccce
Confidence 9999999999999888888888765432 345689999999887544456899999985 56666554433212 2
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
......+++.++++|+.|+.|++|++..+.. ..+.......++.+++|.|..
T Consensus 267 ~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~-~~l~~~~s~~p~~g~~f~Pkr 318 (568)
T PTZ00420 267 IPHYDESTGLIYLIGKGDGNCRYYQHSLGSI-RKVNEYKSCSPFRSFGFLPKQ 318 (568)
T ss_pred EEeeeCCCCCEEEEEECCCeEEEEEccCCcE-EeecccccCCCccceEEcccc
Confidence 2233344578888999999999999987643 333333334567889999864
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.7e-24 Score=195.18 Aligned_cols=306 Identities=15% Similarity=0.172 Sum_probs=228.5
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
....|.+++|+|.|...++++...+.++-....-.....+....... ..++. .....|.+.|.|.+|||+
T Consensus 31 dsqairav~fhp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~p--------p~v~~--kr~khhkgsiyc~~ws~~ 100 (350)
T KOG0641|consen 31 DSQAIRAVAFHPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQP--------PSVLC--KRNKHHKGSIYCTAWSPC 100 (350)
T ss_pred chhheeeEEecCCCceEEeccCCceEEEEccccccCcccccccccCC--------CeEEe--eeccccCccEEEEEecCc
Confidence 56788999999999988888888888886543211110111000000 00111 112259999999999999
Q ss_pred CCeEEEEc-CCeEEEEECCC--ceE---EEEeeCCCCCeeEEEEecC---CCCEEEEEe-CCCcEEEEEeecceEEEeec
Q 001319 816 DSYVMSAT-GGKISLFNMMT--FKV---MTTFMSPPPASTFLAFHPQ---DNNIIAIGT-EDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~--~~~---~~~~~~~~~~i~~l~~s~~---~~~~la~g~-~dg~v~iwd~~~~~~~~~~~ 885 (1101)
|+++|+|+ |..|++..... ... -.++..|.+.|..++|-.+ ++.+|++++ .|-.|++=|..+|+....+.
T Consensus 101 geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~a~s 180 (350)
T KOG0641|consen 101 GELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFHALS 180 (350)
T ss_pred cCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcceeec
Confidence 99999999 77888876543 222 3467789999999999752 456777765 56788888999999999999
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecC-CCCCCCcceEEEcCCCCEEEEEe-CCeEEEEE
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-GKTPTGDTRVQFNADQVRMLVVH-ETQLAIYD 963 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d 963 (1101)
+|.+.|.++ ++-++-.+++|+.|.+|++||+.-..+.......... +-....+.+++..|.|++|++|. |....+||
T Consensus 181 ghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lyd 259 (350)
T KOG0641|consen 181 GHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYD 259 (350)
T ss_pred CCcccEEEE-EEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEE
Confidence 999999887 2335789999999999999999876655443222222 12226789999999999999986 89999999
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCccc-CCCCccceEEEEE
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL-NGSQTVYPLVVAA 1042 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~l~~ 1042 (1101)
+..++.+..+.+| ...|.++.|||...|+++++.|..|++-|+... +...+ +.+++ +|.+ .++.+.|
T Consensus 260 irg~r~iq~f~ph---sadir~vrfsp~a~yllt~syd~~ikltdlqgd-la~el------~~~vv~ehkd--k~i~~rw 327 (350)
T KOG0641|consen 260 IRGGRMIQRFHPH---SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD-LAHEL------PIMVVAEHKD--KAIQCRW 327 (350)
T ss_pred eeCCceeeeeCCC---ccceeEEEeCCCceEEEEecccceEEEeecccc-hhhcC------ceEEEEeccC--ceEEEEe
Confidence 9999999999887 899999999999999999999999999998742 22111 12222 2444 5578999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCC
Q 001319 1043 HPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1043 ~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
+|+ +.-+++.+.|.++.+|-+.
T Consensus 328 h~~-d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 328 HPQ-DFSFISSSADKTATLWALN 349 (350)
T ss_pred cCc-cceeeeccCcceEEEeccC
Confidence 995 7778899999999999763
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.4e-25 Score=235.63 Aligned_cols=278 Identities=15% Similarity=0.300 Sum_probs=235.1
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE-EEEcc-CC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR-VAWSP-DG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~-~~~sp-dg 418 (1101)
.+|+..|..+++.+.. .++++|.||++++|+-..++.+. .+.+.+|.+.|.+ +++-+ |+
T Consensus 11 ~gH~~DVr~v~~~~~~--~i~s~sRd~t~~vw~~~~~~~l~-----------------~~~~~~~~g~i~~~i~y~e~~~ 71 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV--CIISGSRDGTVKVWAKKGKQYLE-----------------THAFEGPKGFIANSICYAESDK 71 (745)
T ss_pred ccCccchheeEecCCe--EEeecCCCCceeeeeccCccccc-----------------ceecccCcceeeccceeccccC
Confidence 3599999999998887 35789999999999976555433 2347778888888 88886 55
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeE
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~ 498 (1101)
-.|++|+.|.+|.+|...+...+. .+.||...|.+++-..++. ++|||.|.++++|- .+++...+.+|+..|+
T Consensus 72 ~~l~~g~~D~~i~v~~~~~~~P~~---~LkgH~snVC~ls~~~~~~---~iSgSWD~TakvW~-~~~l~~~l~gH~asVW 144 (745)
T KOG0301|consen 72 GRLVVGGMDTTIIVFKLSQAEPLY---TLKGHKSNVCSLSIGEDGT---LISGSWDSTAKVWR-IGELVYSLQGHTASVW 144 (745)
T ss_pred cceEeecccceEEEEecCCCCchh---hhhccccceeeeecCCcCc---eEecccccceEEec-chhhhcccCCcchhee
Confidence 569999999999999999988766 7899999999999887775 89999999999997 4556677999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+++..|.. .+++|+.|++|++|. .++...++.+|...|+.+++-+++. +++|+. ||.|++|++ +|+.+.
T Consensus 145 Av~~l~e~---~~vTgsaDKtIklWk--~~~~l~tf~gHtD~VRgL~vl~~~~-flScsN----Dg~Ir~w~~-~ge~l~ 213 (745)
T KOG0301|consen 145 AVASLPEN---TYVTGSADKTIKLWK--GGTLLKTFSGHTDCVRGLAVLDDSH-FLSCSN----DGSIRLWDL-DGEVLL 213 (745)
T ss_pred eeeecCCC---cEEeccCcceeeecc--CCchhhhhccchhheeeeEEecCCC-eEeecC----CceEEEEec-cCceee
Confidence 99987643 789999999999994 5778888999999999999988765 455553 999999999 899999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++.+|.. -+.+++...++..++++|+|++++||+.. ++.+.+..+.. .|+++.+-++|. +++|+.||.||||..
T Consensus 214 ~~~ghtn-~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPtt--siWsa~~L~NgD-Ivvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 214 EMHGHTN-FVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTT--SIWSAKVLLNGD-IVVGGSDGRVRVFTV 287 (745)
T ss_pred eeeccce-EEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCcc--ceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence 9999988 78889988888899999999999999976 77777776653 688898888885 677888999999987
Q ss_pred ccc
Q 001319 659 AIG 661 (1101)
Q Consensus 659 ~~~ 661 (1101)
...
T Consensus 288 ~k~ 290 (745)
T KOG0301|consen 288 DKD 290 (745)
T ss_pred ccc
Confidence 643
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-25 Score=209.94 Aligned_cols=248 Identities=15% Similarity=0.270 Sum_probs=205.5
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP- 416 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp- 416 (1101)
...+.-.+.+..|+||+.....+++++.||+++|||+..... +-..++.|...|.++.|++
T Consensus 54 ~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~------------------Pi~~~kEH~~EV~Svdwn~~ 115 (311)
T KOG0277|consen 54 CQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK------------------PIHKFKEHKREVYSVDWNTV 115 (311)
T ss_pred EEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCCCc------------------chhHHHhhhhheEEeccccc
Confidence 344556789999999999777788999999999999543221 2235888999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCC
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHE 494 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~ 494 (1101)
+++.+++++-|++|++|+..-++.+. ++.||...|...+|+|.... ++++++.|+++++|| ..|+.+. +..|.
T Consensus 116 ~r~~~ltsSWD~TiKLW~~~r~~Sv~---Tf~gh~~~Iy~a~~sp~~~n-lfas~Sgd~~l~lwdvr~~gk~~~-i~ah~ 190 (311)
T KOG0277|consen 116 RRRIFLTSSWDGTIKLWDPNRPNSVQ---TFNGHNSCIYQAAFSPHIPN-LFASASGDGTLRLWDVRSPGKFMS-IEAHN 190 (311)
T ss_pred cceeEEeeccCCceEeecCCCCcceE---eecCCccEEEEEecCCCCCC-eEEEccCCceEEEEEecCCCceeE-EEecc
Confidence 66777888999999999999887666 78999999999999998766 899999999999999 5666665 88899
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCC-eeeeccCCCCceEEEEEccCCC-EEEEeecCCCCCceEEEEeCC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
..|.++.|+.. +...+++|+.|+.|++||++..+ ++.++.+|+-.|+.+.|||... .|++++. |-+++|||..
T Consensus 191 ~Eil~cdw~ky-~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY----DmT~riw~~~ 265 (311)
T KOG0277|consen 191 SEILCCDWSKY-NHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY----DMTVRIWDPE 265 (311)
T ss_pred ceeEeeccccc-CCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc----cceEEecccc
Confidence 99999999866 45799999999999999998754 4567888888999999999754 5677775 8899999998
Q ss_pred CCe-eEEEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEEC
Q 001319 573 EGT-IKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 573 ~~~-~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+. .+.+...|.. .+..+.|++ ++.++++++-|+.++||+.
T Consensus 266 ~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 266 RQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred cchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 554 4455554444 677788876 5678999999999999984
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.3e-24 Score=244.10 Aligned_cols=249 Identities=16% Similarity=0.219 Sum_probs=200.0
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCccc----------ccceeeecccCcEEEEEEec-CCCceEEEEecC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL----------RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGD 473 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~----------~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~ 473 (1101)
|-..|.....++|+..+++++.+..+..|+...+..+ .....+.+|.+.|++++|+| +++ +|++|+.
T Consensus 19 ~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~--~LaSgS~ 96 (493)
T PTZ00421 19 HFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQ--KLFTASE 96 (493)
T ss_pred ceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCC--EEEEEeC
Confidence 3345666677778777777777777777776544322 22224779999999999999 777 8999999
Q ss_pred CceEEEEE-cCC-------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEE
Q 001319 474 DKLIKVWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1101)
Q Consensus 474 d~~v~iwd-~~~-------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1101)
|++|++|| .++ .++..+.+|...|.+++|+|.. +.+|++++.|++|++||+.++.....+..|...|.+++
T Consensus 97 DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~-~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla 175 (493)
T PTZ00421 97 DGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSA-MNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLE 175 (493)
T ss_pred CCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCC-CCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEE
Confidence 99999999 443 3567889999999999999853 36899999999999999999988888888889999999
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCe-ee
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVN-IL 620 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~-~~ 620 (1101)
|+|+|.+|++++. |+.|++||+++++.+..+.+|.......+.|.+++..+++++ .|+.|++||+++.. .+
T Consensus 176 ~spdG~lLatgs~----Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~ 251 (493)
T PTZ00421 176 WNLDGSLLCTTSK----DKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPY 251 (493)
T ss_pred EECCCCEEEEecC----CCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCce
Confidence 9999999999985 899999999999999999988765556678899888888765 47899999998754 33
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEcccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~ 661 (1101)
.....+ ....+....|++++++|++++ .|+.|++||+.++
T Consensus 252 ~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 252 STVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred eEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 333322 222455667899999999887 5999999999877
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.8e-25 Score=210.97 Aligned_cols=303 Identities=17% Similarity=0.202 Sum_probs=204.5
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcc-----cccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
.++++|.+.|++++||.||++||+++.|++|++|+++.-.. ++. .-.-+.-+.++|+||-+. +++++-..
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~----nve~dhpT~V~FapDc~s-~vv~~~~g 154 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQ----NVEYDHPTRVVFAPDCKS-VVVSVKRG 154 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhc----cccCCCceEEEECCCcce-EEEEEccC
Confidence 45999999999999999999999999999999999986322 221 111224678999999986 67777778
Q ss_pred ceEEEEE----cCCceeEE---------eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCce
Q 001319 475 KLIKVWE----LSGRKLFN---------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541 (1101)
Q Consensus 475 ~~v~iwd----~~~~~~~~---------~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v 541 (1101)
.++++|. .+|..... -+.|+-.|..+-.. +++.+|++++.|..|.+|++. ++....+......-
T Consensus 155 ~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA--~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n 231 (420)
T KOG2096|consen 155 NKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIA--GNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSN 231 (420)
T ss_pred CEEEEEEeeecccCCCCcccccccccccchhcccceEEEeec--CCceEEEEecCCCcEEEEecC-Cceeeeeccccccc
Confidence 8999998 23332211 13456666666553 467899999999999999987 66666666555556
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1101)
+..+.||+|+++++++. ..-|.+|. ++|..+|.+ .+...
T Consensus 232 ~~aavSP~GRFia~~gF----TpDVkVwE--------------------~~f~kdG~f-----------------qev~r 270 (420)
T KOG2096|consen 232 YDAAVSPDGRFIAVSGF----TPDVKVWE--------------------PIFTKDGTF-----------------QEVKR 270 (420)
T ss_pred cceeeCCCCcEEEEecC----CCCceEEE--------------------EEeccCcch-----------------hhhhh
Confidence 67777888888887765 33355554 334444321 12223
Q ss_pred eeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCc
Q 001319 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC 701 (1101)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~ 701 (1101)
.+...+|...|..++|+++.+.+++.+.||++++||++-..+.- .|.+.|-.+
T Consensus 271 vf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~---------------------qDpk~Lk~g------ 323 (420)
T KOG2096|consen 271 VFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAG---------------------QDPKILKEG------ 323 (420)
T ss_pred hheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecC---------------------CCchHhhcC------
Confidence 34445566789999999999999999999999999986431110 000111000
Q ss_pred ceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeec
Q 001319 702 KVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASA 781 (1101)
Q Consensus 702 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~ 781 (1101)
..+. ....+.-..+..+|.|+.+++ +....++++...+
T Consensus 324 ---------------------------~~pl-~aag~~p~RL~lsP~g~~lA~-s~gs~l~~~~se~------------- 361 (420)
T KOG2096|consen 324 ---------------------------SAPL-HAAGSEPVRLELSPSGDSLAV-SFGSDLKVFASED------------- 361 (420)
T ss_pred ---------------------------Ccch-hhcCCCceEEEeCCCCcEEEe-ecCCceEEEEccc-------------
Confidence 0000 112233348899999985554 4445677765433
Q ss_pred cccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEE
Q 001319 782 VPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFN 831 (1101)
Q Consensus 782 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd 831 (1101)
|......-. .|...|.+++|+++|+++++++|..++++.
T Consensus 362 ---------g~~~~~~e~--~h~~~Is~is~~~~g~~~atcGdr~vrv~~ 400 (420)
T KOG2096|consen 362 ---------GKDYPELED--IHSTTISSISYSSDGKYIATCGDRYVRVIR 400 (420)
T ss_pred ---------CccchhHHH--hhcCceeeEEecCCCcEEeeecceeeeeec
Confidence 221111111 289999999999999999999999998886
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.2e-21 Score=215.72 Aligned_cols=277 Identities=16% Similarity=0.199 Sum_probs=225.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.|...-+.|+|.|+|. ++.+++.||.|++|+...-.... .++.-+...|.+++- ++.+|
T Consensus 11 aht~G~t~i~~d~~ge-fi~tcgsdg~ir~~~~~sd~e~P------------------~ti~~~g~~v~~ia~--~s~~f 69 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGE-FICTCGSDGDIRKWKTNSDEEEP------------------ETIDISGELVSSIAC--YSNHF 69 (933)
T ss_pred hccCceEEEEEcCCCC-EEEEecCCCceEEeecCCcccCC------------------chhhccCceeEEEee--cccce
Confidence 5888899999999999 56788899999999987652211 123337778888876 45699
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
++|+.+++|.+|...+++.-. .+...+-++++++|+.+|+ +++.||.|-.|++-+ .++.....+++|.++|.++
T Consensus 70 ~~~s~~~tv~~y~fps~~~~~---iL~Rftlp~r~~~v~g~g~--~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l 144 (933)
T KOG1274|consen 70 LTGSEQNTVLRYKFPSGEEDT---ILARFTLPIRDLAVSGSGK--MIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQL 144 (933)
T ss_pred EEeeccceEEEeeCCCCCccc---eeeeeeccceEEEEecCCc--EEEeecCceeEEEEeccccchheeecccCCceeee
Confidence 999999999999999887543 3455677899999999999 899999999999999 8888899999999999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--------CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
.++| ++.+|++.+-||.|++||+.++.....+..- ...+..++|+|+|..++..+. ++.|.+|+..
T Consensus 145 ~~~p--~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~----d~~Vkvy~r~ 218 (933)
T KOG1274|consen 145 SYDP--KGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPV----DNTVKVYSRK 218 (933)
T ss_pred eEcC--CCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeecc----CCeEEEEccC
Confidence 9977 6689999999999999999988776554332 235678999999776666654 8899999999
Q ss_pred CCeeEEEecccCCcc-eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 573 EGTIKRTYAGFRKKS-NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
+......+....... +..++|+|.|.||++++.||.|.|||..+... +.....|.+++|.|+.+.+-.....|
T Consensus 219 ~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw~p~~n~it~~~~~g 292 (933)
T KOG1274|consen 219 GWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAWKPNANAITLITALG 292 (933)
T ss_pred CceeheeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh------ccccceeEEEecCCCCCeeEEEeecc
Confidence 999988887654433 88899999999999999999999999988222 33345799999999988776666555
Q ss_pred cEEEE
Q 001319 652 GFKIL 656 (1101)
Q Consensus 652 ~i~iw 656 (1101)
...+|
T Consensus 293 ~~~~~ 297 (933)
T KOG1274|consen 293 TLGVS 297 (933)
T ss_pred ccccC
Confidence 55544
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.7e-26 Score=222.35 Aligned_cols=285 Identities=16% Similarity=0.214 Sum_probs=225.3
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.|.||.+.|.+++=.|..-. .++||+.||.|++|| .+..++.++..|.+.|..+++.. ..+++++.|++|+.|.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls-~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~----~~~~tvgdDKtvK~wk 135 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLS-TVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ----TSFFTVGDDKTVKQWK 135 (433)
T ss_pred hccccccccchhhcCcchhh-hhhccccCceEEEEehhhhhhhheeecccCceeeEEecc----cceEEecCCcceeeee
Confidence 46799999999999998732 699999999999999 77888999999999999999865 4688999999999998
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEE-EEE
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAV 603 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~ 603 (1101)
++.. ...++. ....+..+..+..+..+++||. .|.|||.....++..+.-..+ .+.++.|+|....+ +++
T Consensus 136 ~~~~-p~~til-g~s~~~gIdh~~~~~~FaTcGe------~i~IWD~~R~~Pv~smswG~D-ti~svkfNpvETsILas~ 206 (433)
T KOG0268|consen 136 IDGP-PLHTIL-GKSVYLGIDHHRKNSVFATCGE------QIDIWDEQRDNPVSSMSWGAD-SISSVKFNPVETSILASC 206 (433)
T ss_pred ccCC-cceeee-ccccccccccccccccccccCc------eeeecccccCCccceeecCCC-ceeEEecCCCcchheeee
Confidence 8763 333332 2334566777777788888864 599999998889988887665 78999999977655 456
Q ss_pred eCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceee
Q 001319 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1101)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1101)
+.|+.|.+||++.+.++..+.... .-+.++|+|++-.+++|+.|..++.+|+......+....
T Consensus 207 ~sDrsIvLyD~R~~~Pl~KVi~~m---RTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~-------------- 269 (433)
T KOG0268|consen 207 ASDRSIVLYDLRQASPLKKVILTM---RTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHK-------------- 269 (433)
T ss_pred ccCCceEEEecccCCccceeeeec---cccceecCccccceeeccccccceehhhhhhcccchhhc--------------
Confidence 699999999999999888775543 358899999988999999999999999865422111110
Q ss_pred eeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEE
Q 001319 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 763 (1101)
Q Consensus 684 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~ 763 (1101)
T Consensus 270 -------------------------------------------------------------------------------- 269 (433)
T KOG0268|consen 270 -------------------------------------------------------------------------------- 269 (433)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEee
Q 001319 764 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 764 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~ 842 (1101)
+|.+.|.++.|||.|+-+++|+ |.+|+||....+.....+.
T Consensus 270 --------------------------------------dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 270 --------------------------------------DHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred --------------------------------------ccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 2677788888888888888887 8888888887665443332
Q ss_pred C-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 843 S-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 843 ~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
. .-..|.|+.||. |.+++++|+.|+.|++|.....+.
T Consensus 312 tkRMq~V~~Vk~S~-Dskyi~SGSdd~nvRlWka~Asek 349 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSM-DSKYIISGSDDGNVRLWKAKASEK 349 (433)
T ss_pred HhhhheeeEEEEec-cccEEEecCCCcceeeeecchhhh
Confidence 1 224699999999 999999999999999999775443
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.1e-22 Score=223.73 Aligned_cols=567 Identities=13% Similarity=0.134 Sum_probs=351.5
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCc-eEEEEecCCceEEEEE-c
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKL-LCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~-~~l~s~~~d~~v~iwd-~ 482 (1101)
-...-....||+|+++++.+..+ .|.||...+|+++. .+.+|..++..+.+.|.... .++++++.||.|++|| .
T Consensus 15 ~n~~~~~avfSnD~k~l~~~~~~-~V~VyS~~Tg~~i~---~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~ 90 (792)
T KOG1963|consen 15 RNGNKSPAVFSNDAKFLFLCTGN-FVKVYSTATGECIT---SLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWS 90 (792)
T ss_pred ccceecccccccCCcEEEEeeCC-EEEEEecchHhhhh---hcccccCccceeeecCCCccceEEEEEecCccEEEecCC
Confidence 33334455799999999877654 69999999999988 78899999999999987663 4788999999999999 8
Q ss_pred CCceeEEeecCCcCeEEEecccC--CCccEEEEeccCCe------------EEEEecCCCCee-eeccCCCCceEEEEEc
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHK--ENIQFIFSTAIDGK------------IKAWLYDTMGSR-VDYDAPGHWCTTMLYS 547 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~--~~~~~l~s~~~d~~------------i~~wd~~~~~~~-~~~~~~~~~v~~~~~s 547 (1101)
.+..+.++..+.. +..+.+.+. .....+..+..|.. ++-+.+.+.... ..+......-.++.++
T Consensus 91 ~~~Llkt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~~~~~I~~~ 169 (792)
T KOG1963|consen 91 DGELLKTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQEPKSIVDN 169 (792)
T ss_pred CcEEEEEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhcCCccEEEc
Confidence 8888888764432 333322110 01011112222221 111111111100 0000011114678888
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCee---EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--CeeeEe
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTS 622 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~ 622 (1101)
+.|.+...+. +..+.+|+..++.. .+....++...+.+.+++|.+++++++..||+|.+|.--. +.....
T Consensus 170 ~~ge~~~i~~-----~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~ 244 (792)
T KOG1963|consen 170 NSGEFKGIVH-----MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETC 244 (792)
T ss_pred CCceEEEEEE-----eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccccc
Confidence 8888877765 56788998887551 1112223333578899999999999999999999996433 333222
Q ss_pred eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcc
Q 001319 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1101)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 702 (1101)
...|-|...|.+++|+++|.+|.+|+..+.+.+|.++++.+.+ +
T Consensus 245 t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf--L---------------------------------- 288 (792)
T KOG1963|consen 245 TLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF--L---------------------------------- 288 (792)
T ss_pred eEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc--c----------------------------------
Confidence 2334445589999999999999999999999999998873211 1
Q ss_pred eeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecc
Q 001319 703 VERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 782 (1101)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~ 782 (1101)
..-.+.|..+.++||+........|+.+.+-......... +
T Consensus 289 -------------------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--------t 329 (792)
T KOG1963|consen 289 -------------------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--------T 329 (792)
T ss_pred -------------------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--------h
Confidence 1145678888999999988888889888887653221100 0
Q ss_pred ccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE-EcCCeEEEEECCCceEEEEeeC-----CC------CCeeE
Q 001319 783 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS-ATGGKISLFNMMTFKVMTTFMS-----PP------PASTF 850 (1101)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~-~~dg~i~vwd~~~~~~~~~~~~-----~~------~~i~~ 850 (1101)
+.-..+.+... .....+-.+.++++|.-+.++. +-.|.|.+||+.+-+.+..+.. +. -.+++
T Consensus 330 Isgi~~~~~~~------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~ita 403 (792)
T KOG1963|consen 330 ISGIKPPTPST------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITA 403 (792)
T ss_pred ccCccCCCccc------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeee
Confidence 00000000000 0014455677888884444444 4489999999987766555431 12 24778
Q ss_pred EEEecCCCCEEEEEe--------CCC--cEEEEEeecceE----EE-eeccCCCCeeEEEEcCCC--CEEEEEeCCCcEE
Q 001319 851 LAFHPQDNNIIAIGT--------EDS--TIHIYNVRVDEV----KS-KLKGHQKRITGLAFSTSL--NILVSSGADAQLC 913 (1101)
Q Consensus 851 l~~s~~~~~~la~g~--------~dg--~v~iwd~~~~~~----~~-~~~~h~~~V~~l~~s~d~--~~l~s~s~Dg~v~ 913 (1101)
++.+. .|.+++++- .|| .+++|-...... .. ....|...+...++.+.. ..+++++.||.++
T Consensus 404 v~~~~-~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 404 VARSR-FGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred ehhhc-cceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 88888 688998874 233 577887765432 22 235788777777665432 3799999999999
Q ss_pred EEECCCCccccc----eEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEc
Q 001319 914 VWSIDTWEKRKS----VTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS 989 (1101)
Q Consensus 914 lwd~~~~~~~~~----~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s 989 (1101)
+|-+...+.... .............+.+++|+.||..|+++.++.|.+||..+........... ..++..+.|.
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s~~~~Itiwd~~~~~~l~~~~~~~--~~~~~~~~~~ 560 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVSFDDTITIWDYDTKNELLCTEGSR--NWPIAELLFT 560 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEecCCEEEEecCCChhhhhcccccc--ccchHhHhhh
Confidence 999844332211 1111111123378999999999999999999999999999843222222211 3344444443
Q ss_pred cCCC--EEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC----cccCCCCccceE---EEEEecCCCCEEE--------E
Q 001319 990 CNSQ--LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP----SVLNGSQTVYPL---VVAAHPLEPNQFA--------I 1052 (1101)
Q Consensus 990 ~dg~--~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~~~h~~~~~~~---~l~~~p~d~~~l~--------s 1052 (1101)
.... ..+.....+.+.+|++-++.+.-.+........ ......+.+..+ -+.|.| ..+. .
T Consensus 561 ~~~~~~~~~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~~~~~~~~~~~s~v~s~~f~vi~~~p---~~~~~~k~~~~~f 637 (792)
T KOG1963|consen 561 AQTQNDGALVHATQQRLSVWNLLSMSLIWNLSLSLRIEGVHVDRAADGDSSVGSTAFAVICWLP---ELLLVVKSIEQIF 637 (792)
T ss_pred cccccccceeeccCceEehHhhhhhheecchhhhhhhhcchhhhhhccccccCccceEEEeecc---cchhhhhhhhhhc
Confidence 3211 123344577899999998877653221111111 000011111111 233444 2333 7
Q ss_pred EECCCeEEEEeCCCCC
Q 001319 1053 GLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1053 ~~~Dg~v~iWd~~~~~ 1068 (1101)
.+.|+.+.+|+.+..+
T Consensus 638 ~~~~~ril~F~~~~pk 653 (792)
T KOG1963|consen 638 RGRDSRILIFSGDSPK 653 (792)
T ss_pred ccccceEEEecCCCch
Confidence 7888888888887766
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.9e-25 Score=211.72 Aligned_cols=294 Identities=13% Similarity=0.171 Sum_probs=239.7
Q ss_pred eeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
+.+.+ ||++.||.|+...... ++.+++.|.+.+||.+++|.++.. +.||.+.|.+++|+
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqp-i~gtASADhTA~iWs~Esg~CL~~-------------------Y~GH~GSVNsikfh 199 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQP-ICGTASADHTARIWSLESGACLAT-------------------YTGHTGSVNSIKFH 199 (481)
T ss_pred ehhhhcccccceeeehhhcCCc-ceeecccccceeEEeeccccceee-------------------ecccccceeeEEec
Confidence 33444 5999999999887766 889999999999999999999873 88999999999999
Q ss_pred cCCCEEEEEECCCeEEEEeec------C--------C-----------------------cccccceeeecccCcEEEEE
Q 001319 416 PDGNYVGVAFTKHLIQLYSYA------G--------S-----------------------NDLRQHSQIDAHVGAVNDLA 458 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~------~--------~-----------------------~~~~~~~~l~~h~~~V~~l~ 458 (1101)
+.+.++++++.|++..||... . + ....++..+.+|.+.|.++.
T Consensus 200 ~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~d 279 (481)
T KOG0300|consen 200 NSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACD 279 (481)
T ss_pred cccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehh
Confidence 999999999999999999721 0 0 00113446889999999999
Q ss_pred EecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC-eeeeccC
Q 001319 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDA 536 (1101)
Q Consensus 459 ~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~ 536 (1101)
|...|+ -+++++.|++..+|| .+|..+..+.||....+.++-+|. .+++++.+.|.+.++||++..- ....+.+
T Consensus 280 WL~gg~--Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHpt--QrLVvTsSrDtTFRLWDFReaI~sV~VFQG 355 (481)
T KOG0300|consen 280 WLAGGQ--QMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPT--QRLVVTSSRDTTFRLWDFREAIQSVAVFQG 355 (481)
T ss_pred hhcCcc--eeeeeeccccceeeeeccCceeccccCcchhccccccCCc--ceEEEEeccCceeEeccchhhcceeeeecc
Confidence 999999 699999999999999 999999999999999999998884 4899999999999999998533 3457889
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
|...|++..|..+.+ +++++. |.+|++||+++.+ ++.++... ..++.++++..++.++.--.+..|++||++
T Consensus 356 HtdtVTS~vF~~dd~-vVSgSD----DrTvKvWdLrNMRsplATIRtd--S~~NRvavs~g~~iIAiPhDNRqvRlfDln 428 (481)
T KOG0300|consen 356 HTDTVTSVVFNTDDR-VVSGSD----DRTVKVWDLRNMRSPLATIRTD--SPANRVAVSKGHPIIAIPHDNRQVRLFDLN 428 (481)
T ss_pred cccceeEEEEecCCc-eeecCC----CceEEEeeeccccCcceeeecC--CccceeEeecCCceEEeccCCceEEEEecC
Confidence 999999999987764 666664 8899999998754 45555543 267888898877788888889999999997
Q ss_pred CCeeeEee--ccCCCCCCCCeeEEecCC--CEEEEEEcCCcEEEEEcccc
Q 001319 616 NVNILTST--DAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 616 ~~~~~~~~--~~~~~~~~v~~v~~s~~g--~~l~~~~~d~~i~iwd~~~~ 661 (1101)
...+...- ...++...|.|++|..+. .-|++++.|..+.-|.+...
T Consensus 429 G~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in~p 478 (481)
T KOG0300|consen 429 GNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKINTP 478 (481)
T ss_pred CCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEeccc
Confidence 65443221 233455578999998654 45788999999999998754
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.7e-24 Score=206.64 Aligned_cols=243 Identities=19% Similarity=0.240 Sum_probs=204.7
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+..|.+.|+++|.+ |.|+|+|+.|-+|+|||+.....+. .+-.|.+.|+++.|.++-....|++|++||.|.+|
T Consensus 38 ~~~aH~~sitavAVs--~~~~aSGssDetI~IYDm~k~~qlg---~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw 112 (362)
T KOG0294|consen 38 AFSAHAGSITALAVS--GPYVASGSSDETIHIYDMRKRKQLG---ILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIW 112 (362)
T ss_pred cccccccceeEEEec--ceeEeccCCCCcEEEEeccchhhhc---ceeccccceEEEEecCCcchhheeeecCCCcEEEE
Confidence 477899999999985 9999999999999999999987666 67789999999999998743359999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
+ -.-.++.++++|.+.|+.++++|+ +++.++.+.|+.+++||+-.++.-+....... -+.+.|+|.|.+++.++
T Consensus 113 ~~~~W~~~~slK~H~~~Vt~lsiHPS--~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~-at~v~w~~~Gd~F~v~~-- 187 (362)
T KOG0294|consen 113 RVGSWELLKSLKAHKGQVTDLSIHPS--GKLALSVGGDQVLRTWNLVRGRVAFVLNLKNK-ATLVSWSPQGDHFVVSG-- 187 (362)
T ss_pred EcCCeEEeeeecccccccceeEecCC--CceEEEEcCCceeeeehhhcCccceeeccCCc-ceeeEEcCCCCEEEEEe--
Confidence 9 777889999999999999999995 48899999999999999998887766554433 34599999999888876
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE--
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF-- 637 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~-- 637 (1101)
...|-+|.+++......+.... .+.++.|. ++..+++|++|+.|.+||..+..+...+..|.. +|.++.+
T Consensus 188 ---~~~i~i~q~d~A~v~~~i~~~~--r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH~~--RVK~i~~~~ 259 (362)
T KOG0294|consen 188 ---RNKIDIYQLDNASVFREIENPK--RILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAHEN--RVKDIASYT 259 (362)
T ss_pred ---ccEEEEEecccHhHhhhhhccc--cceeeeec-CCceEEEecCCceEEEeccCCCccceeeecchh--heeeeEEEe
Confidence 5679999998877666655431 34445553 567999999999999999999888888877654 8888874
Q ss_pred ecCCCEEEEEEcCCcEEEEEcccc
Q 001319 638 SKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.|++.+|++++.||.|++||+...
T Consensus 260 ~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 260 NPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred cCCceEEEEeccCceEEEEEcccc
Confidence 457889999999999999999765
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.2e-26 Score=221.38 Aligned_cols=283 Identities=14% Similarity=0.194 Sum_probs=229.2
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
-||.+.|.|+|=+|..-..+|+|+.||.|+|||+.+..+.. ++..|.+.|..+++.. ..
T Consensus 63 ~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~-------------------~f~AH~G~V~Gi~v~~--~~ 121 (433)
T KOG0268|consen 63 DGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIR-------------------TFKAHEGLVRGICVTQ--TS 121 (433)
T ss_pred cccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhh-------------------eeecccCceeeEEecc--cc
Confidence 47999999999999874467999999999999998877665 4888999999999987 77
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
+++++.|.+|+.|.++.. ..+ ++-+ ...+..+.-...+. .++|||. .|.||| ....++..+.-....|.+
T Consensus 122 ~~tvgdDKtvK~wk~~~~-p~~---tilg-~s~~~gIdh~~~~~--~FaTcGe--~i~IWD~~R~~Pv~smswG~Dti~s 192 (433)
T KOG0268|consen 122 FFTVGDDKTVKQWKIDGP-PLH---TILG-KSVYLGIDHHRKNS--VFATCGE--QIDIWDEQRDNPVSSMSWGADSISS 192 (433)
T ss_pred eEEecCCcceeeeeccCC-cce---eeec-cccccccccccccc--cccccCc--eeeecccccCCccceeecCCCceeE
Confidence 889999999999998873 222 3333 34466676666666 6888876 488999 788889998888888999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC-eeEE
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG-TIKR 578 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~~ 578 (1101)
+.|+|... .+|++++.|+.|.+||++.......+.. ....+.++|+|.+-.++++. .|..++.+|++.- +++.
T Consensus 193 vkfNpvET-sILas~~sDrsIvLyD~R~~~Pl~KVi~-~mRTN~IswnPeafnF~~a~----ED~nlY~~DmR~l~~p~~ 266 (433)
T KOG0268|consen 193 VKFNPVET-SILASCASDRSIVLYDLRQASPLKKVIL-TMRTNTICWNPEAFNFVAAN----EDHNLYTYDMRNLSRPLN 266 (433)
T ss_pred EecCCCcc-hheeeeccCCceEEEecccCCccceeee-eccccceecCccccceeecc----ccccceehhhhhhcccch
Confidence 99998754 6888999999999999999887765442 23467899999665555654 4889999998764 5667
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.+.+|.. .+..+.|+|.|+.+++|+.|.+|+||..+.+.....+... ....|.|+.||.|.+++++|++|+.|++|..
T Consensus 267 v~~dhvs-AV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtk-RMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka 344 (433)
T KOG0268|consen 267 VHKDHVS-AVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTK-RMQHVFCVKYSMDSKYIISGSDDGNVRLWKA 344 (433)
T ss_pred hhcccce-eEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHh-hhheeeEEEEeccccEEEecCCCcceeeeec
Confidence 7777776 7888999999999999999999999999877654444322 2346899999999999999999999999987
Q ss_pred ccc
Q 001319 659 AIG 661 (1101)
Q Consensus 659 ~~~ 661 (1101)
...
T Consensus 345 ~As 347 (433)
T KOG0268|consen 345 KAS 347 (433)
T ss_pred chh
Confidence 543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=204.14 Aligned_cols=268 Identities=17% Similarity=0.261 Sum_probs=213.2
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..+.|..|.|+|.+..||| ++-||++++||+...+... .-.|..++.+++|.+ ...++
T Consensus 12 P~d~IS~v~f~~~~~~LLv-ssWDgslrlYdv~~~~l~~--------------------~~~~~~plL~c~F~d-~~~~~ 69 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLV-SSWDGSLRLYDVPANSLKL--------------------KFKHGAPLLDCAFAD-ESTIV 69 (323)
T ss_pred ChhceeeEEEcCcCCcEEE-EeccCcEEEEeccchhhhh--------------------heecCCceeeeeccC-CceEE
Confidence 4678999999999887755 5699999999998764332 334889999999986 66788
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+|+.||.|+.+|+.++.... +..|..+|.|+.+++... .+++||.|++|++|| ........+. ....|.++.
T Consensus 70 ~G~~dg~vr~~Dln~~~~~~----igth~~~i~ci~~~~~~~--~vIsgsWD~~ik~wD~R~~~~~~~~d-~~kkVy~~~ 142 (323)
T KOG1036|consen 70 TGGLDGQVRRYDLNTGNEDQ----IGTHDEGIRCIEYSYEVG--CVISGSWDKTIKFWDPRNKVVVGTFD-QGKKVYCMD 142 (323)
T ss_pred EeccCceEEEEEecCCccee----eccCCCceEEEEeeccCC--eEEEcccCccEEEEeccccccccccc-cCceEEEEe
Confidence 99999999999999987654 678999999999998777 799999999999999 5444444443 334788887
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC----e
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG----T 575 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~----~ 575 (1101)
. .|+.|+.|+.|..+.+||+++.......... .-.++++++-|++.-.++++- +|.|.+=.++.. +
T Consensus 143 v----~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSi----eGRVavE~~d~s~~~~s 214 (323)
T KOG1036|consen 143 V----SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSI----EGRVAVEYFDDSEEAQS 214 (323)
T ss_pred c----cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEee----cceEEEEccCCchHHhh
Confidence 6 3468999999999999999988776633222 236899999998887777765 677766554443 3
Q ss_pred eEEEecccCC--------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 576 IKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 576 ~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
....|+.|.. .+|+.++|+|--+.|++||.||.|.+||+.+.+.+..+... ...|..++|+.+|..||++
T Consensus 215 kkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~SI~slsfs~dG~~LAia 292 (323)
T KOG1036|consen 215 KKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY--ETSISSLSFSMDGSLLAIA 292 (323)
T ss_pred hceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC--CCceEEEEeccCCCeEEEE
Confidence 4455665543 25788999999999999999999999999999888887654 3368999999999999998
Q ss_pred Ec
Q 001319 648 TA 649 (1101)
Q Consensus 648 ~~ 649 (1101)
+.
T Consensus 293 ~s 294 (323)
T KOG1036|consen 293 SS 294 (323)
T ss_pred ec
Confidence 75
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-25 Score=204.60 Aligned_cols=252 Identities=20% Similarity=0.302 Sum_probs=207.8
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec--CCCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~~d~~v~ 478 (1101)
+...|.+.|..+...--|+.||+|+.|++|+|+.+........+.+|.||.++|+.++|.. -|. +|+|++.||.|.
T Consensus 6 idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~--iLAScsYDgkVI 83 (299)
T KOG1332|consen 6 IDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGT--ILASCSYDGKVI 83 (299)
T ss_pred hhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCc--EeeEeecCceEE
Confidence 4667999999988888899999999999999999998776667779999999999999987 577 899999999999
Q ss_pred EEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC---eeeeccCCCCceEEEEEccC---
Q 001319 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG---SRVDYDAPGHWCTTMLYSAD--- 549 (1101)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~---~~~~~~~~~~~v~~~~~s~d--- 549 (1101)
||. ..|+ ....+..|...|++++|.|..-|-.|++++.||.|.+.+++... .......|.-.|++++|.|-
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 999 6664 34566789999999999999999999999999999999988762 22344567778999999986
Q ss_pred C-----------CEEEEeecCCCCCceEEEEeCCCCe--eEEEecccCCcceEEEEEeCCC----CEEEEEeCCCcEEEE
Q 001319 550 G-----------SRLFSCGTSKDGDSFLVEWNESEGT--IKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQIKFW 612 (1101)
Q Consensus 550 ~-----------~~l~~~~~~~~~~~~i~iwd~~~~~--~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~i~iw 612 (1101)
| +.|++++. |..|+||+...++ ..+++.+|.+ .+..++|.|.- .++++++.||++.||
T Consensus 164 g~~~~~~~~~~~krlvSgGc----Dn~VkiW~~~~~~w~~e~~l~~H~d-wVRDVAwaP~~gl~~s~iAS~SqDg~viIw 238 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGC----DNLVKIWKFDSDSWKLERTLEGHKD-WVRDVAWAPSVGLPKSTIASCSQDGTVIIW 238 (299)
T ss_pred ccccccCcccccceeeccCC----ccceeeeecCCcchhhhhhhhhcch-hhhhhhhccccCCCceeeEEecCCCcEEEE
Confidence 5 56899886 8999999988763 4456888887 88999999964 579999999999999
Q ss_pred ECCCC-eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 613 DMDNV-NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 613 d~~~~-~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
..... +.-.....+.-...+..+.||..|+.|++++.|+.+.+|.-.
T Consensus 239 t~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 239 TKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred EecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 87632 111111112223468999999999999999999999999754
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.4e-24 Score=213.91 Aligned_cols=283 Identities=15% Similarity=0.250 Sum_probs=240.5
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
...|.++...|....+++|+.|..+.++|..+++.+. .+.||...|+.+.|+|+.. .+++++.|..|+||. ...
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q~l~---~~~Gh~kki~~v~~~~~~~--~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQILA---TLKGHTKKITSVKFHKDLD--TVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhhhhh---hccCcceEEEEEEeccchh--heeecCCcceEEeeccccc
Confidence 3468888888888899999999999999999988777 7899999999999999998 799999999999999 666
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--CCceEEEEEccCCCEEEEeecCCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
.+......|..+|+.+..++ .|.||++++.|++..+.|++++......... .-.+++.+|+|||..+.+|..
T Consensus 294 s~~~~~~~h~~~V~~ls~h~--tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~---- 367 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHP--TGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTP---- 367 (506)
T ss_pred cCccccccccccceeeeecc--CCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCC----
Confidence 67778889999999999988 5689999999999999999999887766553 336899999999999999986
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
|+.|++||+.++.....|.+|.+ .|..++|+.+|-+++++++|+.|++||++..+...++...... .|.++.|.+.|.
T Consensus 368 d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~-~v~s~~fD~SGt 445 (506)
T KOG0289|consen 368 DGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKK-EVNSLSFDQSGT 445 (506)
T ss_pred CceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccc-cceeEEEcCCCC
Confidence 99999999999999999999887 8999999999999999999999999999999888888776654 789999999999
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
+|+.++.+=.|++++-.+. .+..+.
T Consensus 446 ~L~~~g~~l~Vy~~~k~~k--~W~~~~----------------------------------------------------- 470 (506)
T KOG0289|consen 446 YLGIAGSDLQVYICKKKTK--SWTEIK----------------------------------------------------- 470 (506)
T ss_pred eEEeecceeEEEEEecccc--cceeee-----------------------------------------------------
Confidence 9999977666655543222 111110
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+ ..|.+..+.+.|.....++++++.|..++++.
T Consensus 471 ------~~---~~~sg~st~v~Fg~~aq~l~s~smd~~l~~~a 504 (506)
T KOG0289|consen 471 ------EL---ADHSGLSTGVRFGEHAQYLASTSMDAILRLYA 504 (506)
T ss_pred ------hh---hhcccccceeeecccceEEeeccchhheEEee
Confidence 01 22566778888888889899999888877764
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.9e-23 Score=235.02 Aligned_cols=251 Identities=15% Similarity=0.215 Sum_probs=191.9
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC-CCceEEEEecCCceEEEEE-cCCc--------eeEEeecC
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR--------KLFNFEGH 493 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~~~d~~v~iwd-~~~~--------~~~~~~~h 493 (1101)
|+.++.|++|+......+ ..+.+|.+.|.+++|+|+ +. +|+||+.|++|+||| .++. ++..+.+|
T Consensus 50 GG~~gvI~L~~~~r~~~v---~~L~gH~~~V~~lafsP~~~~--lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH 124 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPV---IKLKGHTSSILDLQFNPCFSE--ILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGH 124 (568)
T ss_pred CCceeEEEeeecCCCceE---EEEcCCCCCEEEEEEcCCCCC--EEEEEeCCCeEEEEECCCCCccccccccceEEeecC
Confidence 567889999998765433 368899999999999997 56 899999999999999 4432 34567899
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
...|.+++|+|... .++++++.|++|++||++++.....+. +...|.+++|+|+|.+|++++. ++.|++||+++
T Consensus 125 ~~~V~sVaf~P~g~-~iLaSgS~DgtIrIWDl~tg~~~~~i~-~~~~V~SlswspdG~lLat~s~----D~~IrIwD~Rs 198 (568)
T PTZ00420 125 KKKISIIDWNPMNY-YIMCSSGFDSFVNIWDIENEKRAFQIN-MPKKLSSLKWNIKGNLLSGTCV----GKHMHIIDPRK 198 (568)
T ss_pred CCcEEEEEECCCCC-eEEEEEeCCCeEEEEECCCCcEEEEEe-cCCcEEEEEECCCCCEEEEEec----CCEEEEEECCC
Confidence 99999999998532 356799999999999999988776665 4567999999999999998875 88999999999
Q ss_pred CeeEEEecccCCcce----EEEEEeCCCCEEEEEeCCC----cEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCEE
Q 001319 574 GTIKRTYAGFRKKSN----GVVQFDTTQNHFLAVGEDS----QIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v----~~~~~~~~~~~l~~~~~dg----~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1101)
++.+..+.+|.+... ....|+++++++++++.|+ .|++||++. ++.+.....+.....+......++|.++
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~ 278 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIY 278 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEE
Confidence 999999999876321 2234568899999988764 799999985 5666665554443333333345568899
Q ss_pred EEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccc
Q 001319 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 690 (1101)
++|+.|+.|++|++..+. +..+.. .....+...++|.|...
T Consensus 279 lsGkGD~tIr~~e~~~~~--~~~l~~---~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 279 LIGKGDGNCRYYQHSLGS--IRKVNE---YKSCSPFRSFGFLPKQI 319 (568)
T ss_pred EEEECCCeEEEEEccCCc--EEeecc---cccCCCccceEEccccc
Confidence 999999999999997651 222221 11345566778877654
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.4e-24 Score=207.04 Aligned_cols=323 Identities=15% Similarity=0.259 Sum_probs=236.5
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.+.||.+.|+.++-..... ++.+++.|.+.+||. .+|+|+.++.||.+.|++|.|++ .+.++++++.|++-.||.
T Consensus 143 e~~GHkDGiW~Vaa~~tqp--i~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~--s~~L~lTaSGD~taHIW~ 218 (481)
T KOG0300|consen 143 ELEGHKDGIWHVAADSTQP--ICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHN--SGLLLLTASGDETAHIWK 218 (481)
T ss_pred hhcccccceeeehhhcCCc--ceeecccccceeEEeeccccceeeecccccceeeEEecc--ccceEEEccCCcchHHHH
Confidence 6889999999999876555 899999999999999 99999999999999999999988 457999999999999996
Q ss_pred cCCCCeeeec---cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEE
Q 001319 525 YDTMGSRVDY---DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1101)
Q Consensus 525 ~~~~~~~~~~---~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1101)
..-.-+...- ..|... ..+.-+...... .++..+.=...-..++..+.+|.. .+.+..|-..|+.++
T Consensus 219 ~av~~~vP~~~a~~~hSsE-eE~e~sDe~~~d--------~d~~~~sD~~tiRvPl~~ltgH~~-vV~a~dWL~gg~Q~v 288 (481)
T KOG0300|consen 219 AAVNWEVPSNNAPSDHSSE-EEEEHSDEHNRD--------TDSSEKSDGHTIRVPLMRLTGHRA-VVSACDWLAGGQQMV 288 (481)
T ss_pred HhhcCcCCCCCCCCCCCch-hhhhcccccccc--------cccccccCCceeeeeeeeeecccc-ceEehhhhcCcceee
Confidence 3211110000 000000 000000000000 011111000011235667888877 788888888999999
Q ss_pred EEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcce
Q 001319 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIE 681 (1101)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~ 681 (1101)
+++.|.+..+||+++++++..+.+|.+ ..+.++-+|..+++++.+.|.+.++||+......+..++
T Consensus 289 TaSWDRTAnlwDVEtge~v~~LtGHd~--ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQ------------ 354 (481)
T KOG0300|consen 289 TASWDRTANLWDVETGEVVNILTGHDS--ELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQ------------ 354 (481)
T ss_pred eeeccccceeeeeccCceeccccCcch--hccccccCCcceEEEEeccCceeEeccchhhcceeeeec------------
Confidence 999999999999999999999988766 688899999999999999999999999864311111111
Q ss_pred eeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeE
Q 001319 682 SVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQ 761 (1101)
Q Consensus 682 ~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v 761 (1101)
T Consensus 355 -------------------------------------------------------------------------------- 354 (481)
T KOG0300|consen 355 -------------------------------------------------------------------------------- 354 (481)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCce-EEE
Q 001319 762 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK-VMT 839 (1101)
Q Consensus 762 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~-~~~ 839 (1101)
+|.+.|+++.|..|.+ +++|+ |.+|+|||+.+.. ++.
T Consensus 355 ----------------------------------------GHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplA 393 (481)
T KOG0300|consen 355 ----------------------------------------GHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLA 393 (481)
T ss_pred ----------------------------------------ccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcce
Confidence 3777777777776654 44554 6778888887654 344
Q ss_pred EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE----eeccCCCCeeEEEEcCCC--CEEEEEeCCCcEE
Q 001319 840 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----KLKGHQKRITGLAFSTSL--NILVSSGADAQLC 913 (1101)
Q Consensus 840 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~----~~~~h~~~V~~l~~s~d~--~~l~s~s~Dg~v~ 913 (1101)
++.. ..++..++.+. ++.++|.--.+..|++||+....+-+ .-++|..-|.|++|..+. .-|+++|.|..+.
T Consensus 394 TIRt-dS~~NRvavs~-g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~ 471 (481)
T KOG0300|consen 394 TIRT-DSPANRVAVSK-GHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVA 471 (481)
T ss_pred eeec-CCccceeEeec-CCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceee
Confidence 5543 66788999998 88899999999999999997554322 235899999999998653 3688999999999
Q ss_pred EEECCC
Q 001319 914 VWSIDT 919 (1101)
Q Consensus 914 lwd~~~ 919 (1101)
-|.+..
T Consensus 472 gW~in~ 477 (481)
T KOG0300|consen 472 GWKINT 477 (481)
T ss_pred eeEecc
Confidence 999876
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-24 Score=203.16 Aligned_cols=247 Identities=15% Similarity=0.178 Sum_probs=193.7
Q ss_pred ccCCccEEEEEEcc-CCCEEEEEECCCeEEEEeecCC-cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 403 KDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 403 ~~h~~~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
...++.|.+++||| ...++++|+-|++||+|+++.. .... +....|.++|.+++|+.||. .+++|+.|+.+++|
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddgs--kVf~g~~Dk~~k~w 99 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDGS--KVFSGGCDKQAKLW 99 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCCc--eEEeeccCCceEEE
Confidence 34678999999999 5556668899999999999873 3322 24568999999999999998 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .++ .+..+..|.++|..+.|.+...-..|++|+.|++|++||.+.......+..++. +.++..- ...++++..
T Consensus 100 DL~S~-Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeR-vYa~Dv~--~pm~vVata- 174 (347)
T KOG0647|consen 100 DLASG-QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPER-VYAADVL--YPMAVVATA- 174 (347)
T ss_pred EccCC-CeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccce-eeehhcc--CceeEEEec-
Confidence 9 566 677888899999999998776666899999999999999999888887776654 4444332 234444443
Q ss_pred CCCCceEEEEeCCCCeeE-EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC--eeeEeeccCCC-------C
Q 001319 560 KDGDSFLVEWNESEGTIK-RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGG-------L 629 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~-------~ 629 (1101)
+..|.+|+++.+... +.....-...+.+++...+....+.|+-+|.+.|..+..+ +.-..+..|.. .
T Consensus 175 ---~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~V 251 (347)
T KOG0647|consen 175 ---ERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDV 251 (347)
T ss_pred ---CCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCce
Confidence 778999999765432 3333333446888999999888899999999999998876 33333443332 3
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
-.|++++|+|....|++++.||++.+||-...
T Consensus 252 YaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar 283 (347)
T KOG0647|consen 252 YAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR 283 (347)
T ss_pred EEecceEeecccceEEEecCCceEEEecchhh
Confidence 35788999999999999999999999997655
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.2e-22 Score=218.58 Aligned_cols=518 Identities=16% Similarity=0.219 Sum_probs=332.8
Q ss_pred EEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCc-cEEEEeccCCeEEEEecCCCCee
Q 001319 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTMGSR 531 (1101)
Q Consensus 454 V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~~~~ 531 (1101)
-..-.|++|++. ++.+ .+..|.||. .+|.++..+.+|..++..+.+.+.... .++++++.||.|++||...+...
T Consensus 19 ~~~avfSnD~k~--l~~~-~~~~V~VyS~~Tg~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~vwd~~~~~Ll 95 (792)
T KOG1963|consen 19 KSPAVFSNDAKF--LFLC-TGNFVKVYSTATGECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRVWDWSDGELL 95 (792)
T ss_pred ecccccccCCcE--EEEe-eCCEEEEEecchHhhhhhcccccCccceeeecCCCccceEEEEEecCccEEEecCCCcEEE
Confidence 344579999994 4433 367899999 999999999999999999999887654 67889999999999999988887
Q ss_pred eeccCCCCceEEEEEcc----CCCEEEEeecC--------CCCCceEEEEeCCCC--eeEEEecccCCcceEEEEEeCCC
Q 001319 532 VDYDAPGHWCTTMLYSA----DGSRLFSCGTS--------KDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQ 597 (1101)
Q Consensus 532 ~~~~~~~~~v~~~~~s~----d~~~l~~~~~~--------~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~ 597 (1101)
..+..+.. +..+.+.| ....+.....+ .+-.++++-+.+.+. ........+. ...++.+++.|
T Consensus 96 kt~~~~~~-v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~~~~~d~~~~~~--~~~~I~~~~~g 172 (792)
T KOG1963|consen 96 KTFDNNLP-VHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFDSAKGDFLKEHQ--EPKSIVDNNSG 172 (792)
T ss_pred EEEecCCc-eeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeeccccchhhhhhhc--CCccEEEcCCc
Confidence 76654433 33333321 11111111100 000111111111110 0000111111 13457788877
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEe--eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCccc
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTS--TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 675 (1101)
.+....- +..+.+|...++..... -....|...+++.++||++++++++..||.|.+|.--... .
T Consensus 173 e~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~-------~----- 239 (792)
T KOG1963|consen 173 EFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSS-------D----- 239 (792)
T ss_pred eEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccc-------c-----
Confidence 6655544 45788898887541111 1111233357899999999999999999999999743210 0
Q ss_pred ccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEe
Q 001319 676 LRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL 755 (1101)
Q Consensus 676 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~ 755 (1101)
+...++.+.. |...|.+++|+++|.++++|
T Consensus 240 ---------------------------------------------~~~t~t~lHW-----H~~~V~~L~fS~~G~~LlSG 269 (792)
T KOG1963|consen 240 ---------------------------------------------DSETCTLLHW-----HHDEVNSLSFSSDGAYLLSG 269 (792)
T ss_pred ---------------------------------------------ccccceEEEe-----cccccceeEEecCCceEeec
Confidence 0011111111 78899999999999999999
Q ss_pred ecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCC
Q 001319 756 GSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT 834 (1101)
Q Consensus 756 ~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~ 834 (1101)
+.+|.+.+|.+.+.++. .++ ....+|..+.+|||+.+.+... |+.|.+....+
T Consensus 270 G~E~VLv~Wq~~T~~kq------------------------fLP--RLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~d 323 (792)
T KOG1963|consen 270 GREGVLVLWQLETGKKQ------------------------FLP--RLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASD 323 (792)
T ss_pred ccceEEEEEeecCCCcc------------------------ccc--ccCCeeEEEEEcCCCCeEEEEecCceEEEEeccc
Confidence 99999999987654321 112 1678899999999999887765 99999998877
Q ss_pred ceEEEEeeCCC-----------CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec-----------cCCCCee
Q 001319 835 FKVMTTFMSPP-----------PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-----------GHQKRIT 892 (1101)
Q Consensus 835 ~~~~~~~~~~~-----------~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~-----------~h~~~V~ 892 (1101)
.....++.+.. +-.+.++++| ..+.++..+..|.|.+||+.+.+.+..+. .+.-.|+
T Consensus 324 l~~k~tIsgi~~~~~~~k~~~~~l~t~~~idp-r~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~it 402 (792)
T KOG1963|consen 324 LEIKSTISGIKPPTPSTKTRPQSLTTGVSIDP-RTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGIT 402 (792)
T ss_pred hhhhhhccCccCCCccccccccccceeEEEcC-CCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeee
Confidence 66655554422 2366788998 67778888899999999999876665442 1233578
Q ss_pred EEEEcCCCCEEEEEe--------CCC--cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCC-EEEE-EeCCeEE
Q 001319 893 GLAFSTSLNILVSSG--------ADA--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV-RMLV-VHETQLA 960 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s--------~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~-~~d~~i~ 960 (1101)
+++.+..|.+++|.- .|| .+++|-.......-.........|....+..+..++... .+++ +.|+.++
T Consensus 403 av~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~K 482 (792)
T KOG1963|consen 403 AVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFK 482 (792)
T ss_pred eehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEE
Confidence 888888899999874 233 488998877665544444455555534444444444443 4555 5699999
Q ss_pred EEEcCCceeeeE-------eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC-CceeEeeCCCCcCCCcccCCC
Q 001319 961 IYDASKMERIRQ-------WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT-LRLRCYIAPSTYLSPSVLNGS 1032 (1101)
Q Consensus 961 v~d~~~~~~~~~-------~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~ 1032 (1101)
||-+...+.+.. ...+..|..++++.+||.||..|+.+ .|++|.+||..+ .++.+......+.. .
T Consensus 483 iW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~~~~l~~~~~~~~~~~------~ 555 (792)
T KOG1963|consen 483 IWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFSQDGSLLAVS-FDDTITIWDYDTKNELLCTEGSRNWPI------A 555 (792)
T ss_pred EEEEecccccCcCccceEEeeeeccccCcccchhhcCCCcEEEEe-cCCEEEEecCCChhhhhccccccccch------H
Confidence 998843322211 11122458999999999999766655 588999999999 55555554333221 1
Q ss_pred CccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCcc--ccCCCCCC
Q 001319 1033 QTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW--GVSPPVDN 1079 (1101)
Q Consensus 1033 ~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~--~~~~~~~~ 1079 (1101)
+... .+=.+ ....+....-+.+.+|++.+..-.| ....-+++
T Consensus 556 ~~~~---~~~~~--~~~~~~~~~~~~l~~WNll~~~l~w~~s~~~~i~~ 599 (792)
T KOG1963|consen 556 ELLF---TAQTQ--NDGALVHATQQRLSVWNLLSMSLIWNLSLSLRIEG 599 (792)
T ss_pred hHhh---hcccc--cccceeeccCceEehHhhhhhheecchhhhhhhhc
Confidence 1111 11011 1223344456889999999988777 44444444
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-24 Score=219.50 Aligned_cols=291 Identities=14% Similarity=0.205 Sum_probs=232.5
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+.++.|++-|.++.+|...+++ .||+ .|.|+|||+...... .+....-.....+.|.++..+|
T Consensus 412 q~~tL~HGEvVcAvtIS~~trhV-yTgG-kgcVKVWdis~pg~k--------------~PvsqLdcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 412 QINTLAHGEVVCAVTISNPTRHV-YTGG-KGCVKVWDISQPGNK--------------SPVSQLDCLNRDNYIRSCKLLP 475 (705)
T ss_pred hhhhhccCcEEEEEEecCCccee-EecC-CCeEEEeeccCCCCC--------------CccccccccCcccceeeeEecC
Confidence 34678899999999999999875 6775 578999999653211 1111111222467899999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
||+.|++|+.-.++.|||+.+.... ...++..-.-...+++.+||.+ +.++|..||.|.||| .+...++.|.||.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTpr-ikaeltssapaCyALa~spDak--vcFsccsdGnI~vwDLhnq~~VrqfqGhtD 552 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDAK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHTD 552 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcc-hhhhcCCcchhhhhhhcCCccc--eeeeeccCCcEEEEEcccceeeecccCCCC
Confidence 9999999999999999999875432 2224444455688899999999 899999999999999 78888999999999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.+.||.++. ||..|.+|+.|.+||.||++.+........ ...|.++.++|++.++++|-. ++.+.+.... +.
T Consensus 553 GascIdis~--dGtklWTGGlDntvRcWDlregrqlqqhdF-~SQIfSLg~cP~~dWlavGMe----ns~vevlh~s-kp 624 (705)
T KOG0639|consen 553 GASCIDISK--DGTKLWTGGLDNTVRCWDLREGRQLQQHDF-SSQIFSLGYCPTGDWLAVGME----NSNVEVLHTS-KP 624 (705)
T ss_pred CceeEEecC--CCceeecCCCccceeehhhhhhhhhhhhhh-hhhheecccCCCccceeeecc----cCcEEEEecC-Cc
Confidence 999999976 778999999999999999998877655443 345999999999999999975 6666665543 33
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
....+..|.. .|-++.|.+-|+++++.|.|+.+..|...-|..+...+. ...|.++.+|.|.+++++|+.|....+
T Consensus 625 ~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqskE---~SsVlsCDIS~ddkyIVTGSGdkkATV 700 (705)
T KOG0639|consen 625 EKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISFDDKYIVTGSGDKKATV 700 (705)
T ss_pred cceeeccccc-EEEEEEecccCceeeecCchhhhhhccCccccceeeccc---cCcceeeeeccCceEEEecCCCcceEE
Confidence 3344444444 788899999999999999999999999998887766543 347999999999999999999998888
Q ss_pred EEc
Q 001319 656 LAN 658 (1101)
Q Consensus 656 wd~ 658 (1101)
|.+
T Consensus 701 YeV 703 (705)
T KOG0639|consen 701 YEV 703 (705)
T ss_pred EEE
Confidence 865
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-23 Score=200.44 Aligned_cols=298 Identities=13% Similarity=0.155 Sum_probs=223.9
Q ss_pred CCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE
Q 001319 332 DLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 332 ~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
..|..+..++.|.. -.|+.||+.|. +||+|..||.|.|||+.|...- +++.+|..+|++
T Consensus 12 ~~PEel~~tld~~~-a~~~~Fs~~G~-~lAvGc~nG~vvI~D~~T~~ia-------------------r~lsaH~~pi~s 70 (405)
T KOG1273|consen 12 EYPEELTHTLDNPL-AECCQFSRWGD-YLAVGCANGRVVIYDFDTFRIA-------------------RMLSAHVRPITS 70 (405)
T ss_pred cChHhhceeccCCc-cceEEeccCcc-eeeeeccCCcEEEEEccccchh-------------------hhhhccccceeE
Confidence 56777888888776 99999999998 5699999999999999886532 358999999999
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 491 (1101)
++||+||+.|++++.|..|.+||+..|.+++++ ....+|+.+.|.|-.++ .++++-.+..-.+-+.....-..+.
T Consensus 71 l~WS~dgr~LltsS~D~si~lwDl~~gs~l~ri----rf~spv~~~q~hp~k~n-~~va~~~~~sp~vi~~s~~~h~~Lp 145 (405)
T KOG1273|consen 71 LCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRI----RFDSPVWGAQWHPRKRN-KCVATIMEESPVVIDFSDPKHSVLP 145 (405)
T ss_pred EEecCCCCEeeeecCCceeEEEeccCCCceeEE----EccCccceeeeccccCC-eEEEEEecCCcEEEEecCCceeecc
Confidence 999999999999999999999999999977643 35789999999998776 3444333444444442221111111
Q ss_pred cC-Cc--CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC-CceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 492 GH-EA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 492 ~h-~~--~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
.. .+ .+..-+-.++..|+++++|...|.+.++|..+.++...+.... ..|..+.++..|+.++..+. |..|+
T Consensus 146 ~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNts----DRvIR 221 (405)
T KOG1273|consen 146 KDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTS----DRVIR 221 (405)
T ss_pred CCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecC----CceEE
Confidence 11 11 1111111234567999999999999999999998887766655 67999999999999999886 89999
Q ss_pred EEeCCCC-------ee--EEEeccc-CCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 568 EWNESEG-------TI--KRTYAGF-RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 568 iwd~~~~-------~~--~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
.|+++.- +. .+++..- ......+++|+.+|.++++++ .-..++||....|.+++.+.+..+. ....+.
T Consensus 222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE-~l~DV~ 300 (405)
T KOG1273|consen 222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE-ELLDVN 300 (405)
T ss_pred EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh-heeecc
Confidence 9987621 11 1122110 112345689999999998876 4567999999999999999776533 567899
Q ss_pred EecCCCEEEEEEcCCcEEEEEcccc
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
|+|-...+++- ..|.+++|.....
T Consensus 301 whp~rp~i~si-~sg~v~iw~~~~~ 324 (405)
T KOG1273|consen 301 WHPVRPIIASI-ASGVVYIWAVVQV 324 (405)
T ss_pred cccceeeeeec-cCCceEEEEeecc
Confidence 99988888777 6799999987644
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.3e-23 Score=213.92 Aligned_cols=264 Identities=14% Similarity=0.244 Sum_probs=213.5
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
....+.|.++|+.+.+-|....++|+++..+.|.|||+.+-.-.... . ..-.+...+.||...=++++|++
T Consensus 117 i~~~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~-------~--~~~~Pdl~L~gH~~eg~glsWn~ 187 (422)
T KOG0264|consen 117 ISQKINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKA-------S--GECRPDLRLKGHEKEGYGLSWNR 187 (422)
T ss_pred EEEeccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccc-------c--ccCCCceEEEeeccccccccccc
Confidence 44556799999999999999999999999999999998764332210 0 01112346899999888999999
Q ss_pred C-CCEEEEEECCCeEEEEeecCCcc----cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c--CCceeE
Q 001319 417 D-GNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLF 488 (1101)
Q Consensus 417 d-g~~las~~~d~~i~vwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~--~~~~~~ 488 (1101)
. .-+|++|+.|++|++||+..... +.....+.+|...|..++|++-... ++++++.|+.+.||| . +.++..
T Consensus 188 ~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~-lF~sv~dd~~L~iwD~R~~~~~~~~ 266 (422)
T KOG0264|consen 188 QQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHED-LFGSVGDDGKLMIWDTRSNTSKPSH 266 (422)
T ss_pred ccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchh-hheeecCCCeEEEEEcCCCCCCCcc
Confidence 4 55889999999999999975443 5555678899999999999998776 899999999999999 6 566677
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEccCCCEE-EEeecCCCCCceE
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFL 566 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l-~~~~~~~~~~~~i 566 (1101)
...+|.++|.+++|+|-. +.+||+|+.|++|++||+++... ...+.+|...|..+.|||....+ ++++. |+.+
T Consensus 267 ~~~ah~~~vn~~~fnp~~-~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~----D~rl 341 (422)
T KOG0264|consen 267 SVKAHSAEVNCVAFNPFN-EFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGT----DRRL 341 (422)
T ss_pred cccccCCceeEEEeCCCC-CceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEeccc----CCcE
Confidence 888999999999999874 57999999999999999998654 56788999999999999987655 45543 8999
Q ss_pred EEEeCCCC--------------eeEEEecccCCcceEEEEEeCCCCEEEE-EeCCCcEEEEECCC
Q 001319 567 VEWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1101)
Q Consensus 567 ~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1101)
.+||+..- +++..-.||.. .|..+.|+|...++++ .++|+.+.||.+..
T Consensus 342 ~vWDls~ig~eq~~eda~dgppEllF~HgGH~~-kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 342 NVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTA-KVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EEEeccccccccChhhhccCCcceeEEecCccc-ccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 99998642 22345556666 7888999999877655 77999999999863
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.2e-23 Score=220.74 Aligned_cols=278 Identities=15% Similarity=0.212 Sum_probs=221.0
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE-EEe
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC-IAL 812 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~ 812 (1101)
.+|...|..+++.+.. .+++++.||++++|+-..... +-...+. ++.+.|.+ +++
T Consensus 11 ~gH~~DVr~v~~~~~~-~i~s~sRd~t~~vw~~~~~~~---------------------l~~~~~~--~~~g~i~~~i~y 66 (745)
T KOG0301|consen 11 EGHKSDVRAVAVTDGV-CIISGSRDGTVKVWAKKGKQY---------------------LETHAFE--GPKGFIANSICY 66 (745)
T ss_pred ccCccchheeEecCCe-EEeecCCCCceeeeeccCccc---------------------ccceecc--cCcceeecccee
Confidence 5688888888876655 589999999999997322110 0001111 25555555 676
Q ss_pred cC-CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC
Q 001319 813 SK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 890 (1101)
Q Consensus 813 s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~ 890 (1101)
-+ ++-.+++|+ |..|.+|...+..+...+.+|...|.++.... ++. +++|+.|.++++|.. +++...+++|+..
T Consensus 67 ~e~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~-~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~as 142 (745)
T KOG0301|consen 67 AESDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGE-DGT-LISGSWDSTAKVWRI--GELVYSLQGHTAS 142 (745)
T ss_pred ccccCcceEeecccceEEEEecCCCCchhhhhccccceeeeecCC-cCc-eEecccccceEEecc--hhhhcccCCcchh
Confidence 64 444466666 99999999999999999999999999999877 555 889999999999976 5666779999999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceee
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI 970 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~ 970 (1101)
|++++.-|++ .++||+.|++|++|.-.+ .++.+.+|. ..|+.+++-+++.++.++.||.|++|++ +|+++
T Consensus 143 VWAv~~l~e~-~~vTgsaDKtIklWk~~~-------~l~tf~gHt-D~VRgL~vl~~~~flScsNDg~Ir~w~~-~ge~l 212 (745)
T KOG0301|consen 143 VWAVASLPEN-TYVTGSADKTIKLWKGGT-------LLKTFSGHT-DCVRGLAVLDDSHFLSCSNDGSIRLWDL-DGEVL 212 (745)
T ss_pred eeeeeecCCC-cEEeccCcceeeeccCCc-------hhhhhccch-hheeeeEEecCCCeEeecCCceEEEEec-cCcee
Confidence 9999999997 889999999999999754 445566766 8999999999999999999999999999 78888
Q ss_pred eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEE
Q 001319 971 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l 1050 (1101)
....+| ..-|.++....++..++++++|++++||+.. ++...+.. .. ..+.++.+-+ ..-+
T Consensus 213 ~~~~gh---tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~l-----------Pt-tsiWsa~~L~--NgDI 273 (745)
T KOG0301|consen 213 LEMHGH---TNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITL-----------PT-TSIWSAKVLL--NGDI 273 (745)
T ss_pred eeeecc---ceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEec-----------Cc-cceEEEEEee--CCCE
Confidence 777665 8899999999999999999999999999987 66666652 11 2334565555 3458
Q ss_pred EEEECCCeEEEEeCCCCC
Q 001319 1051 AIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1051 ~s~~~Dg~v~iWd~~~~~ 1068 (1101)
++|+.||.|+||.....+
T Consensus 274 vvg~SDG~VrVfT~~k~R 291 (745)
T KOG0301|consen 274 VVGGSDGRVRVFTVDKDR 291 (745)
T ss_pred EEeccCceEEEEEecccc
Confidence 999999999999987433
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=209.58 Aligned_cols=287 Identities=12% Similarity=0.217 Sum_probs=234.1
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC-EEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVG 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~la 422 (1101)
.+.|++|.|+|.-. +|.+|+.|++++||.++....... +. +.-...+|.+++|.|+|. .++
T Consensus 213 ~~~I~sv~FHp~~p-lllvaG~d~~lrifqvDGk~N~~l---------------qS--~~l~~fPi~~a~f~p~G~~~i~ 274 (514)
T KOG2055|consen 213 HGGITSVQFHPTAP-LLLVAGLDGTLRIFQVDGKVNPKL---------------QS--IHLEKFPIQKAEFAPNGHSVIF 274 (514)
T ss_pred cCCceEEEecCCCc-eEEEecCCCcEEEEEecCccChhh---------------ee--eeeccCccceeeecCCCceEEE
Confidence 56899999999987 678889999999999975433221 11 222356899999999999 899
Q ss_pred EEECCCeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
+++.......||+.+++..+ +..+.++. ..+.....+++++ +|+..|..|.|.+-. .++..+.+++ -.+.|..+
T Consensus 275 ~s~rrky~ysyDle~ak~~k-~~~~~g~e~~~~e~FeVShd~~--fia~~G~~G~I~lLhakT~eli~s~K-ieG~v~~~ 350 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAKVTK-LKPPYGVEEKSMERFEVSHDSN--FIAIAGNNGHIHLLHAKTKELITSFK-IEGVVSDF 350 (514)
T ss_pred ecccceEEEEeecccccccc-ccCCCCcccchhheeEecCCCC--eEEEcccCceEEeehhhhhhhhheee-eccEEeeE
Confidence 99999999999999987543 22344554 4678889999999 899999999999999 8888888877 57789999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC-ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC------
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE------ 573 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~------ 573 (1101)
+|+. +++.|++++.+|.|.+||++...+...+...+. .-+++|.|++|.++|+|+. .|.|.|||..+
T Consensus 351 ~fsS--dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~----~GiVNIYd~~s~~~s~~ 424 (514)
T KOG2055|consen 351 TFSS--DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSD----SGIVNIYDGNSCFASTN 424 (514)
T ss_pred EEec--CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccC----cceEEEeccchhhccCC
Confidence 9974 678999999999999999999988877766554 5678999999999999985 89999999653
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCC-CCCCCCeeEEecCCCEEEEEEcC
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+++..+..... .|+.+.|+++...|+.++ .+..+++-.+.+......++... ....|+|++|||.|.+|++|..+
T Consensus 425 PkPik~~dNLtt-~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~ 503 (514)
T KOG2055|consen 425 PKPIKTVDNLTT-AITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEA 503 (514)
T ss_pred CCchhhhhhhhe-eeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCC
Confidence 455555555444 688999999999998877 67789999998877776665442 34578999999999999999999
Q ss_pred CcEEEEEcc
Q 001319 651 NGFKILANA 659 (1101)
Q Consensus 651 ~~i~iwd~~ 659 (1101)
|.+.+|.+.
T Consensus 504 grv~l~kL~ 512 (514)
T KOG2055|consen 504 GRVHLFKLH 512 (514)
T ss_pred CceeeEeec
Confidence 999999864
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.2e-23 Score=209.60 Aligned_cols=223 Identities=15% Similarity=0.179 Sum_probs=193.1
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c--
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-- 482 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-- 482 (1101)
.+.|.|++-+|+|.+|+.|+..|.|++|.+.+|..+. .+.+|-..|+|+.|+.||. +++|||.||.|.+|+ .
T Consensus 81 Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~---v~~aHYQ~ITcL~fs~dgs--~iiTgskDg~V~vW~l~~l 155 (476)
T KOG0646|consen 81 PGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLN---VLSAHYQSITCLKFSDDGS--HIITGSKDGAVLVWLLTDL 155 (476)
T ss_pred ccceeeeecCCCceEEEeecccCcEEEEEeccccHHH---HHHhhccceeEEEEeCCCc--EEEecCCCccEEEEEEEee
Confidence 5689999999999999999999999999999999887 5779999999999999999 899999999999998 2
Q ss_pred -------CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 483 -------SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 483 -------~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+-++++.|..|.-+|+++...+.+...+|+++|.|.++++||+..+.....+..+ ..+.+++++|-++.++.
T Consensus 156 v~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp-~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 156 VSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFP-SSIKAVALDPAERVVYI 234 (476)
T ss_pred cccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecC-CcceeEEEcccccEEEe
Confidence 2356788999999999999887766689999999999999999998887776644 45899999999999999
Q ss_pred eecCCCCCceEEEEeCCC----------------CeeEEEecccCC-cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 556 CGTSKDGDSFLVEWNESE----------------GTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~----------------~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
|+. +|.|.+.++.. +..+..+.||.+ ..|+|++++-||..|++|+.||+|+|||+.+.+
T Consensus 235 Gt~----~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 235 GTE----EGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred cCC----cceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 986 88888876542 234566777776 579999999999999999999999999999999
Q ss_pred eeEeeccCCCCCCCCeeEEecC
Q 001319 619 ILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 619 ~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
+++++... .++|+.+.+.|-
T Consensus 311 ~iRtl~~~--kgpVtnL~i~~~ 330 (476)
T KOG0646|consen 311 CIRTLQTS--KGPVTNLQINPL 330 (476)
T ss_pred HHHHHhhh--ccccceeEeecc
Confidence 99888743 337888888664
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.6e-23 Score=212.21 Aligned_cols=283 Identities=13% Similarity=0.179 Sum_probs=229.0
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 814 (1101)
.|..-|..+.++...+.+++++. |.|+|||+...... . ....+........|+++.+.|
T Consensus 417 ~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k-----~---------------PvsqLdcl~rdnyiRSckL~p 475 (705)
T KOG0639|consen 417 AHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNK-----S---------------PVSQLDCLNRDNYIRSCKLLP 475 (705)
T ss_pred ccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCC-----C---------------ccccccccCcccceeeeEecC
Confidence 47888889999999998888775 68999998643110 0 000111123667899999999
Q ss_pred CCCeEEEEc-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 891 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V 891 (1101)
||+.|++|+ ..++.|||+..-.. ..++........+++.+| |.++.++++.||.|.|||+.+..+++.|+||.+.+
T Consensus 476 dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~sp-DakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGa 554 (705)
T KOG0639|consen 476 DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 554 (705)
T ss_pred CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCC-ccceeeeeccCCcEEEEEcccceeeecccCCCCCc
Confidence 999999998 57899999975443 344444445688899999 99999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceee
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERI 970 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~ 970 (1101)
.||.+++||..|-||+-|.+||-||+..+.+.....+. ..|.++..+|.+.++++|- ++.+.|......+..
T Consensus 555 scIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~-------SQIfSLg~cP~~dWlavGMens~vevlh~skp~ky 627 (705)
T KOG0639|consen 555 SCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFS-------SQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKY 627 (705)
T ss_pred eeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhh-------hhheecccCCCccceeeecccCcEEEEecCCccce
Confidence 99999999999999999999999999998765544333 6788999999999999985 778888887655433
Q ss_pred eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEE
Q 001319 971 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l 1050 (1101)
.+. -|.+.|.++.|++-|+|+++.+.|.-+-.|...-|..+.... ....|+++..+. |+.++
T Consensus 628 -qlh---lheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk-------------E~SsVlsCDIS~-ddkyI 689 (705)
T KOG0639|consen 628 -QLH---LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-------------ESSSVLSCDISF-DDKYI 689 (705)
T ss_pred -eec---ccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc-------------ccCcceeeeecc-CceEE
Confidence 232 348999999999999999999999999999999887665543 233567787777 79999
Q ss_pred EEEECCCeEEEEeC
Q 001319 1051 AIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1051 ~s~~~Dg~v~iWd~ 1064 (1101)
|||+.|....||.+
T Consensus 690 VTGSGdkkATVYeV 703 (705)
T KOG0639|consen 690 VTGSGDKKATVYEV 703 (705)
T ss_pred EecCCCcceEEEEE
Confidence 99999998888875
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=6.5e-23 Score=208.87 Aligned_cols=301 Identities=18% Similarity=0.248 Sum_probs=224.1
Q ss_pred EeccC-CeEEEEecCCCCeeeeccCCCC-ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEE
Q 001319 513 STAID-GKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1101)
Q Consensus 513 s~~~d-~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~ 590 (1101)
+++.| ..+.+||++++.....+.+... .-.++.. -.+.+++++.. +...|.+|.+..........-..+ .+.+
T Consensus 12 ssS~d~~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~-l~~~yllsaq~---~rp~l~vw~i~k~~~~~q~~v~Pg-~v~a 86 (476)
T KOG0646|consen 12 SSSFDPINCIVWDLRTGTSLLQYKGSYLAQAASLTA-LNNEYLLSAQL---KRPLLHVWEILKKDQVVQYIVLPG-PVHA 86 (476)
T ss_pred ccCCCCcceeEEecCCCceeEEecCcccccchhhhh-hchhheeeecc---cCccccccccCchhhhhhhccccc-ceee
Confidence 33444 4589999999999988876522 1111111 13467777654 356899999876554442222222 7889
Q ss_pred EEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccC
Q 001319 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1101)
Q Consensus 591 ~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 670 (1101)
++-+|.|.+|+.|+..|.|++|.+.+|.++..+..| ...|+|+.|+-||.+|++|+.||.|.+|.+..... ....
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aH--YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~---a~~~ 161 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAH--YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVS---ADND 161 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHHhh--ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecc---cccC
Confidence 999999999999999999999999999999998655 56899999999999999999999999998753210 0000
Q ss_pred CCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc
Q 001319 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 750 (1101)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 750 (1101)
+
T Consensus 162 -----------------------------------------------------------------~-------------- 162 (476)
T KOG0646|consen 162 -----------------------------------------------------------------H-------------- 162 (476)
T ss_pred -----------------------------------------------------------------C--------------
Confidence 0
Q ss_pred cEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC--CCeEEEEc-CCeE
Q 001319 751 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSAT-GGKI 827 (1101)
Q Consensus 751 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~-dg~i 827 (1101)
.-.-++.|. .|.-+|+.+...+. ..++++++ |.++
T Consensus 163 ------~~~p~~~f~------------------------------------~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 163 ------SVKPLHIFS------------------------------------DHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ------Cccceeeec------------------------------------cCcceeEEEEecCCCccceEEEecCCceE
Confidence 000111121 27777777776654 34677777 9999
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc----------------eEEEeeccCCC--
Q 001319 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----------------EVKSKLKGHQK-- 889 (1101)
Q Consensus 828 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~----------------~~~~~~~~h~~-- 889 (1101)
++||+..+.++.++.- +..+.+++.+| .++.+.+|+++|.|.+.++..- ..+..+.||.+
T Consensus 201 k~wdlS~g~LLlti~f-p~si~av~lDp-ae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~ 278 (476)
T KOG0646|consen 201 KLWDLSLGVLLLTITF-PSSIKAVALDP-AERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENES 278 (476)
T ss_pred EEEEeccceeeEEEec-CCcceeEEEcc-cccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCc
Confidence 9999999998888764 67899999999 8999999999999999887532 34566789998
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 890 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 890 ~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
+|+|++++-||..|++|+.||.|+|||+.+.+++++.... .++|+.+.+.|-.+-..
T Consensus 279 ~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~------kgpVtnL~i~~~~~~~~ 335 (476)
T KOG0646|consen 279 AITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTS------KGPVTNLQINPLERGII 335 (476)
T ss_pred ceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhh------ccccceeEeecccccee
Confidence 9999999999999999999999999999998877655421 17888888866544333
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.6e-22 Score=205.29 Aligned_cols=289 Identities=16% Similarity=0.232 Sum_probs=228.8
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEECCC--CeeeEeeccCCCCCCCCeeEEecCCC-EEEEEEcCCcEEEEEcccccc
Q 001319 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
.|+++.|+|....++++|.||.++||.+.. ...++.+... ..+|.+..|.|+|. .+++++....++.||+.+...
T Consensus 215 ~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~--~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 215 GITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLE--KFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred CceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeec--cCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 699999999999999999999999998864 3345555444 34899999999999 888899999999999976511
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEE
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRL 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 743 (1101)
..+.. +
T Consensus 293 --~k~~~------------------------------------------------------------~------------ 298 (514)
T KOG2055|consen 293 --TKLKP------------------------------------------------------------P------------ 298 (514)
T ss_pred --ccccC------------------------------------------------------------C------------
Confidence 00000 0
Q ss_pred EeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc
Q 001319 744 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 823 (1101)
Q Consensus 744 ~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 823 (1101)
.| .....+....+||++++|+..+
T Consensus 299 ----~g----------------------------------------------------~e~~~~e~FeVShd~~fia~~G 322 (514)
T KOG2055|consen 299 ----YG----------------------------------------------------VEEKSMERFEVSHDSNFIAIAG 322 (514)
T ss_pred ----CC----------------------------------------------------cccchhheeEecCCCCeEEEcc
Confidence 00 0123355678899999999888
Q ss_pred -CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC-CeeEEEEcCCCC
Q 001319 824 -GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK-RITGLAFSTSLN 901 (1101)
Q Consensus 824 -dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~-~V~~l~~s~d~~ 901 (1101)
.|.|.+....+++.+..++. .+.|..++|+. +++.|.+.+.+|.|++||+....++.++....+ .-+.++.|+++.
T Consensus 323 ~~G~I~lLhakT~eli~s~Ki-eG~v~~~~fsS-dsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ 400 (514)
T KOG2055|consen 323 NNGHIHLLHAKTKELITSFKI-EGVVSDFTFSS-DSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGS 400 (514)
T ss_pred cCceEEeehhhhhhhhheeee-ccEEeeEEEec-CCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCc
Confidence 79999999999999988875 67899999998 888888888999999999999999988863322 236778889999
Q ss_pred EEEEEeCCCcEEEEECCCCcccc-ceEEeecCCCCCCCcceEEEcCCCCEEEEEe---CCeEEEEEcCCceeeeEeccCC
Q 001319 902 ILVSSGADAQLCVWSIDTWEKRK-SVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERIRQWTPQD 977 (1101)
Q Consensus 902 ~l~s~s~Dg~v~lwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~~i~v~d~~~~~~~~~~~~~~ 977 (1101)
+||+|+..|.|.|||..+...-. ..++.....- ...|+.+.|++|+..||+++ ...+++-.+.+......|+...
T Consensus 401 ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNL-tt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n 479 (514)
T KOG2055|consen 401 YLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNL-TTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSN 479 (514)
T ss_pred eEEeccCcceEEEeccchhhccCCCCchhhhhhh-heeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCC
Confidence 99999999999999976522111 1111111111 16899999999999999854 6789999999999988888876
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
..-+.|+|++|||.|.++|.|..+|.+.+|.+.
T Consensus 480 ~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 480 TKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 667889999999999999999999999999874
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.91 E-value=3e-22 Score=220.43 Aligned_cols=281 Identities=18% Similarity=0.211 Sum_probs=218.8
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
..|....+.++|.++|..|++++.||.|++|+.......|.. +. .+...|.+++.
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~t----------------------i~--~~g~~v~~ia~- 64 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPET----------------------ID--ISGELVSSIAC- 64 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCch----------------------hh--ccCceeEEEee-
Confidence 347888999999999999999999999999986533211110 00 14556666665
Q ss_pred CCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCee
Q 001319 814 KNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT 892 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~ 892 (1101)
++..+++++ +++|.+|.+.+++.-..+....-++++++|+. +|+++|.|+.|-.|++-++.+......+++|.++|.
T Consensus 65 -~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g-~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl 142 (933)
T KOG1274|consen 65 -YSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSG-SGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVL 142 (933)
T ss_pred -cccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEec-CCcEEEeecCceeEEEEeccccchheeecccCCcee
Confidence 444777777 89999999988876555554566899999999 999999999999999999999999999999999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC--CCCcceEEEcCCCCEEE-EEeCCeEEEEEcCCcee
Q 001319 893 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT--PTGDTRVQFNADQVRML-VVHETQLAIYDASKMER 969 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~-~~~d~~i~v~d~~~~~~ 969 (1101)
+|.|+|.+++||+.+-||+|++||++++.+......-...-.. ...+..++|+|+|..++ .+.|+.|.+|+..+++.
T Consensus 143 ~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~ 222 (933)
T KOG1274|consen 143 QLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWEL 222 (933)
T ss_pred eeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCcee
Confidence 9999999999999999999999999998876654322221111 25677899999955555 57899999999999999
Q ss_pred eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCE
Q 001319 970 IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1049 (1101)
Q Consensus 970 ~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~ 1049 (1101)
...+..... ...+..+.|||+|+|||+++.||.|.|||.++-+. |.....+.+++|.|+ .+-
T Consensus 223 ~f~Lr~~~~-ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~----------------~~~~~~Vc~~aw~p~-~n~ 284 (933)
T KOG1274|consen 223 QFKLRDKLS-SSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER----------------HEFKRAVCCEAWKPN-ANA 284 (933)
T ss_pred heeeccccc-ccceEEEEEcCCCcEEeeeccCCcEEEEecccchh----------------ccccceeEEEecCCC-CCe
Confidence 888877543 44499999999999999999999999999998222 333445678888885 443
Q ss_pred EEEEECCCeE
Q 001319 1050 FAIGLTDGSV 1059 (1101)
Q Consensus 1050 l~s~~~Dg~v 1059 (1101)
+-.-..-|..
T Consensus 285 it~~~~~g~~ 294 (933)
T KOG1274|consen 285 ITLITALGTL 294 (933)
T ss_pred eEEEeecccc
Confidence 3333333333
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=191.62 Aligned_cols=253 Identities=17% Similarity=0.238 Sum_probs=201.2
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg 418 (1101)
..|.+-|-.+...--|++ |||++.|++|+|+.+..+.... ....|.||.++|..++|-. -|
T Consensus 8 t~H~D~IHda~lDyygkr-lATcsSD~tVkIf~v~~n~~s~----------------ll~~L~Gh~GPVwqv~wahPk~G 70 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKR-LATCSSDGTVKIFEVRNNGQSK----------------LLAELTGHSGPVWKVAWAHPKFG 70 (299)
T ss_pred hhhhhhhhHhhhhhhcce-eeeecCCccEEEEEEcCCCCce----------------eeeEecCCCCCeeEEeecccccC
Confidence 347888888888778885 5999999999999998765311 1235999999999999977 89
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCc-e-eEEeecCC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR-K-LFNFEGHE 494 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~-~-~~~~~~h~ 494 (1101)
..||+++.||.|.||.-++| ...+..+...|...|++++|.|.+--+.|+.++.||.|.|.+ .+|. . ......|.
T Consensus 71 ~iLAScsYDgkVIiWke~~g-~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~ 149 (299)
T KOG1332|consen 71 TILASCSYDGKVIIWKEENG-RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHE 149 (299)
T ss_pred cEeeEeecCceEEEEecCCC-chhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccc
Confidence 99999999999999999998 455555778999999999999998777999999999999998 3322 2 23456799
Q ss_pred cCeEEEecccCCC-c-----------cEEEEeccCCeEEEEecCCCCe--eeeccCCCCceEEEEEccCC----CEEEEe
Q 001319 495 APVYSICPHHKEN-I-----------QFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG----SRLFSC 556 (1101)
Q Consensus 495 ~~v~~v~~~~~~~-~-----------~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~d~----~~l~~~ 556 (1101)
-.|++++|.|..- | +.|++|+.|..|++|+.+...- ...+..|...|+.++|.|.- .+++++
T Consensus 150 ~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~ 229 (299)
T KOG1332|consen 150 IGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASC 229 (299)
T ss_pred cccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEe
Confidence 9999999987521 2 5699999999999999887532 23478899999999999964 478888
Q ss_pred ecCCCCCceEEEEeCCC--CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 557 GTSKDGDSFLVEWNESE--GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
+. |+++.||..+. ..-..++...-...+..+.|+..|+.|++++.|+.|.+|.-.
T Consensus 230 Sq----Dg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 230 SQ----DGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cC----CCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeC
Confidence 75 99999997652 112222222122378899999999999999999999999754
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.5e-22 Score=189.34 Aligned_cols=300 Identities=15% Similarity=0.216 Sum_probs=226.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~ 420 (1101)
.|++.|+++...|...+++.+|+.||.|.+||++.........+- -+ ..|.. ...--.+|...|..+.|-| |...
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li-~k-~~c~v--~~~h~~~Hky~iss~~WyP~DtGm 116 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLI-AK-HKCIV--AKQHENGHKYAISSAIWYPIDTGM 116 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccce-eh-eeeec--cccCCccceeeeeeeEEeeecCce
Confidence 589999999999974446689999999999999875422110000 00 01111 1112567999999999999 7778
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCC-ceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK-LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~-~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
+.+++.|.+++|||..+-+... .+ .-.+.|.+-+|+|-.. +-++++|..|-.|++.| .+|..-+++.||.+.|.
T Consensus 117 FtssSFDhtlKVWDtnTlQ~a~---~F-~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 117 FTSSSFDHTLKVWDTNTLQEAV---DF-KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred eecccccceEEEeecccceeeE---Ee-ecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceE
Confidence 8889999999999999966543 22 3466789999998643 33778888899999999 99999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCC-Ceeeecc--------------CCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYD--------------APGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~--------------~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
++.|+|..+ -.|++|+.||.|++||++.. .+...+. .|.+.+.+++|+.||.++++++. +
T Consensus 193 aV~Wsp~~e-~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gt----d 267 (397)
T KOG4283|consen 193 AVEWSPSSE-WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGT----D 267 (397)
T ss_pred EEEeccCce-eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccC----c
Confidence 999999754 67899999999999999875 3333332 34457899999999999999987 8
Q ss_pred ceEEEEeCCCCeeEEEecc---cCC---cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 564 SFLVEWNESEGTIKRTYAG---FRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~---~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
..+++|+...|+-...-.+ +.+ ..+. +. +.+...++.--.++.+.++++-.+..+..+..+. ..|.|.++
T Consensus 268 ~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~--k~i~c~~~ 343 (397)
T KOG4283|consen 268 DRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTHL--KRINCAAY 343 (397)
T ss_pred cceEEeecccCcccccccccccccccccceEE-Ee-ecccceEEEEecCCeEEEEEccCceEEEeeeccc--ceeeEEee
Confidence 8999999988764322111 111 0111 22 3333445555566899999999999999998774 37899999
Q ss_pred ecCCCEEEEEEcCCcEEEEEc
Q 001319 638 SKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
-|+=+...++..|+.+..|-.
T Consensus 344 ~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 344 RPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred cCchhhhhccccCCccccccc
Confidence 999999999999999999976
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-22 Score=191.72 Aligned_cols=294 Identities=16% Similarity=0.223 Sum_probs=216.3
Q ss_pred EEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee
Q 001319 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1101)
Q Consensus 409 v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~ 487 (1101)
-.|+.||+.|.+||+|+.||.|.|||+.|...-+ .+.+|..+|++++||+||+ .|+|+|.|..|.+|| ..|.++
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar---~lsaH~~pi~sl~WS~dgr--~LltsS~D~si~lwDl~~gs~l 100 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR---MLSAHVRPITSLCWSRDGR--KLLTSSRDWSIKLWDLLKGSPL 100 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhh---hhhccccceeEEEecCCCC--EeeeecCCceeEEEeccCCCce
Confidence 7899999999999999999999999999976444 6889999999999999999 899999999999999 999999
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
+.++ ..++|+...|+|...+..+++--.. .-.+ +.|++.-..++... .++.+
T Consensus 101 ~rir-f~spv~~~q~hp~k~n~~va~~~~~-sp~v---------------------i~~s~~~h~~Lp~d----~d~dl- 152 (405)
T KOG1273|consen 101 KRIR-FDSPVWGAQWHPRKRNKCVATIMEE-SPVV---------------------IDFSDPKHSVLPKD----DDGDL- 152 (405)
T ss_pred eEEE-ccCccceeeeccccCCeEEEEEecC-CcEE---------------------EEecCCceeeccCC----Ccccc-
Confidence 8887 6779999999998765555443221 1111 22222111111110 01111
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
+....+..|.+.|+++++|...|.+.++|..+.+++..+.... ...|..+.++..|++|+.-
T Consensus 153 -----------------n~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits-~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 153 -----------------NSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITS-VQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred -----------------ccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeech-heeeeEEEEeccCcEEEEe
Confidence 0011223588899999999999999999999999988876554 3478999999999999999
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
+.|+.||.|++..-...
T Consensus 215 tsDRvIR~ye~~di~~~--------------------------------------------------------------- 231 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDE--------------------------------------------------------------- 231 (405)
T ss_pred cCCceEEEEehhhhccc---------------------------------------------------------------
Confidence 99999999987532100
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCE
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 807 (1101)
+.+|.+.. .-++.|+ -....-
T Consensus 232 ----------------------------~r~~e~e~------------------~~K~qDv-------------VNk~~W 252 (405)
T KOG1273|consen 232 ----------------------------GRDGEVEP------------------EHKLQDV-------------VNKLQW 252 (405)
T ss_pred ----------------------------CccCCcCh------------------hHHHHHH-------------Hhhhhh
Confidence 00000000 0000000 023345
Q ss_pred eEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCC-CCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 808 PCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
.+++||.||.+++.++ ...+++|....|.+++.+.+.. .....+.|+| -...+++- ..|.|+||....
T Consensus 253 k~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE~l~DV~whp-~rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 253 KKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGEELLDVNWHP-VRPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred hheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchhheeeccccc-ceeeeeec-cCCceEEEEeec
Confidence 6789999999999887 4669999999999999999877 4577899999 77777766 789999998653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=5.7e-22 Score=208.93 Aligned_cols=496 Identities=11% Similarity=0.131 Sum_probs=297.1
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.|..++|-|||..|++. .+..+.|||.+.|..+. ++++|.+.|.|++||.||+.+|+|+
T Consensus 14 ci~d~afkPDGsqL~lA--Ag~rlliyD~ndG~llq-------------------tLKgHKDtVycVAys~dGkrFASG~ 72 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILA--AGSRLLVYDTSDGTLLQ-------------------PLKGHKDTVYCVAYAKDGKRFASGS 72 (1081)
T ss_pred chheeEECCCCceEEEe--cCCEEEEEeCCCccccc-------------------ccccccceEEEEEEccCCceeccCC
Confidence 79999999999987654 35589999999998775 4999999999999999999999999
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccC
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~ 505 (1101)
.|..|.+|+-+-...++ -.|.+.|.|+.|+|-.. .|+||+- ...-+|....+.+...+ ....+.+++|.
T Consensus 73 aDK~VI~W~~klEG~Lk-----YSH~D~IQCMsFNP~~h--~LasCsL-sdFglWS~~qK~V~K~k-ss~R~~~CsWt-- 141 (1081)
T KOG1538|consen 73 ADKSVIIWTSKLEGILK-----YSHNDAIQCMSFNPITH--QLASCSL-SDFGLWSPEQKSVSKHK-SSSRIICCSWT-- 141 (1081)
T ss_pred CceeEEEecccccceee-----eccCCeeeEeecCchHH--Hhhhcch-hhccccChhhhhHHhhh-hheeEEEeeec--
Confidence 99999999976543332 26999999999999998 6888874 34568985555443332 34456777775
Q ss_pred CCccEEEEeccCCeEEEEecCCCCeeeeccC---CCCceEEEEEccCCC-----EEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGS-----RLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 506 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~d~~-----~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.||++++.|-.+|+|.+-+ .++++...+.. ...+|.+++|+|... .+++.-. ..++.++.+. |+.+
T Consensus 142 nDGqylalG~~nGTIsiRN-k~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW----~qTLSFy~Ls-G~~I 215 (1081)
T KOG1538|consen 142 NDGQYLALGMFNGTISIRN-KNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADW----GQTLSFYQLS-GKQI 215 (1081)
T ss_pred CCCcEEEEeccCceEEeec-CCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEec----cceeEEEEec-ceee
Confidence 4889999999999999875 34444444443 556899999999643 3333322 3445555443 3333
Q ss_pred EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
..-+... ....++.+.++|.+++.||.|+.+.+|-. .|-.+.++.... ..|+.++..|+++.++.|+.||+|..|+
T Consensus 216 gk~r~L~-FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D--~WIWtV~~~PNsQ~v~~GCqDGTiACyN 291 (1081)
T KOG1538|consen 216 GKDRALN-FDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD--SWIWTVQAKPNSQYVVVGCQDGTIACYN 291 (1081)
T ss_pred cccccCC-CCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc--eeEEEEEEccCCceEEEEEccCeeehhh
Confidence 2211111 24567889999999999999999999975 455666654433 3899999999999999999999999998
Q ss_pred ccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCc
Q 001319 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTS 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
+.... +..+....+ ..+..++ ++++-.+......+.- . .
T Consensus 292 l~fST--VH~ly~~RY-A~R~sMt-------------------------------DVivQhLi~~qkvrIk-C------~ 330 (1081)
T KOG1538|consen 292 LIFST--VHGLYKDRY-AYRDSMT-------------------------------DVIVQHLITEQKVRIK-C------K 330 (1081)
T ss_pred hHHhH--hhhhhHHhh-hhhhhhH-------------------------------HHHHHHHhhcceeeee-H------H
Confidence 75431 110000000 0000000 0000000000000000 0 0
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
.-|..++.-. ..+++-- ...|.+|.+......+..... . ..+. ..-...-+.+ .+.
T Consensus 331 DLVkKiaiYr--nrLAVQL-peki~iYel~se~~~~mhY~v----------~--ekI~-------kkf~cSLlVV--c~~ 386 (1081)
T KOG1538|consen 331 DLVKKIAIYR--NRLAVQL-PEKILIYELYSEDLSDMHYRV----------K--EKII-------KKFECSLLVV--CAN 386 (1081)
T ss_pred HHHHHHHhhh--hhheecc-cceEEEEeccccccccchhHH----------H--HHHH-------hhccceEEEE--EcC
Confidence 0000000000 0111111 123444443321111000000 0 0000 0000111111 245
Q ss_pred eEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEE--ecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEE
Q 001319 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAF--HPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA 895 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~--s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 895 (1101)
.++.+.+.++..+|...-+. +.... ..-|..+.. -|-+..-|++|..||.|+-.=+++.-++.. ......|.|+.
T Consensus 387 HiVlCqekrLqClDF~Gvk~-ReW~M-~S~iRYikV~GGP~gREgL~vGlknGqV~kiF~dN~~PiLl-~~~~tAvrClD 463 (1081)
T KOG1538|consen 387 HIVLCQEKRLQCLDFSGVKE-REWQM-ESLIRYIKVIGGPPGREGLLVGLKNGQVLKIFVDNLFPILL-LKQATAVRCLD 463 (1081)
T ss_pred eEEEEcccceeeecccchhh-hhhhH-HHHHHhhhhhcCCCCcceeEEEecCCcEEEEEecCCchhhe-ecccceeEEee
Confidence 56666677777777643111 00000 001111111 121456688899898776544444433322 33457899999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEE
Q 001319 896 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAI 961 (1101)
Q Consensus 896 ~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v 961 (1101)
.+...+.||+..+.++..++|+.+++.+- +. ..+.+++|.....-+.+ .+.|.+.|
T Consensus 464 INA~R~kLAvVDD~~~c~v~DI~t~elL~----QE------pg~nSV~wNT~~E~MlcfT~~g~L~V 520 (1081)
T KOG1538|consen 464 INASRKKLAVVDDNDTCLVYDIDTKELLF----QE------PGANSVAWNTQCEDMLCFTGGGYLNV 520 (1081)
T ss_pred ccCCcceEEEEccCCeEEEEEccCCceEe----ec------CCCceEEeeccccceEEEecCCceEE
Confidence 99999999999999999999999977432 21 56788999887655555 44455444
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-21 Score=188.60 Aligned_cols=241 Identities=15% Similarity=0.089 Sum_probs=189.9
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
....|+++.|+|.+..|++++.||++++||+...+... .-.|..++.+++|.++.. +++|+-||.|+.+|...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~----~~~~~~plL~c~F~d~~~---~~~G~~dg~vr~~Dln~ 84 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKL----KFKHGAPLLDCAFADEST---IVTGGLDGQVRRYDLNT 84 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhh----heecCCceeeeeccCCce---EEEeccCceEEEEEecC
Confidence 46789999999999999999999999999999875433 236899999999998765 89999999999999666
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
.....+..|..+|.+|...+.. ..+++|+.|++|++||.+.......+.... .|.++.. .|..|++|+. +.
T Consensus 85 ~~~~~igth~~~i~ci~~~~~~--~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~----~r 155 (323)
T KOG1036|consen 85 GNEDQIGTHDEGIRCIEYSYEV--GCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTS----DR 155 (323)
T ss_pred CcceeeccCCCceEEEEeeccC--CeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeec----Cc
Confidence 6666777899999999998644 479999999999999998754444444333 6777765 4567777664 88
Q ss_pred eEEEEeCCCCeeEEE-ecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC----eeeEeeccCCC-------CCCC
Q 001319 565 FLVEWNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV----NILTSTDAEGG-------LPNL 632 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~----~~~~~~~~~~~-------~~~v 632 (1101)
.+.+||+++...... ....-...+.++++-|++.-+++++-||.|.+=.++.. +....+..|.. .-+|
T Consensus 156 ~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPV 235 (323)
T KOG1036|consen 156 KVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPV 235 (323)
T ss_pred eEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEe
Confidence 999999987654332 22222336888999999889999999999988766654 33333433321 2478
Q ss_pred CeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 633 PRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++++|+|-...|++|+.||.|.+||+.+.
T Consensus 236 Nai~Fhp~~~tfaTgGsDG~V~~Wd~~~r 264 (323)
T KOG1036|consen 236 NAIAFHPIHGTFATGGSDGIVNIWDLFNR 264 (323)
T ss_pred ceeEeccccceEEecCCCceEEEccCcch
Confidence 99999999999999999999999999876
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.4e-20 Score=206.24 Aligned_cols=278 Identities=16% Similarity=0.222 Sum_probs=205.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE-EEEEcCCcEEEEEccccccccccccCCCcccc
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+.+++++.|+.|++||+.+++.+..+..+. .+..++|+|+++.+ ++++.++.|++||..++. ....+.
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~---~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~~~------- 70 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ---RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE-VIGTLP------- 70 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC---CCCceEECCCCCEEEEEECCCCeEEEEECCCCc-EEEecc-------
Confidence 467888999999999999998888876543 36789999999877 456678999999976541 000000
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
T Consensus 71 -------------------------------------------------------------------------------- 70 (300)
T TIGR03866 71 -------------------------------------------------------------------------------- 70 (300)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-c-CCeEEEEECCC
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-T-GGKISLFNMMT 834 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-dg~i~vwd~~~ 834 (1101)
....+..++++|+++.++++ . ++.+++||+.+
T Consensus 71 ----------------------------------------------~~~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~ 104 (300)
T TIGR03866 71 ----------------------------------------------SGPDPELFALHPNGKILYIANEDDNLVTVIDIET 104 (300)
T ss_pred ----------------------------------------------CCCCccEEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 00112456788888876554 3 68899999998
Q ss_pred ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC-cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEE-eCCCcE
Q 001319 835 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS-TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS-GADAQL 912 (1101)
Q Consensus 835 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg-~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~-s~Dg~v 912 (1101)
++.+..+.. ...+.+++|+| ++.+++++..++ .+.+||..+++....... ...+..++|+|++++|+.+ ..++.|
T Consensus 105 ~~~~~~~~~-~~~~~~~~~~~-dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~~~~v 181 (300)
T TIGR03866 105 RKVLAEIPV-GVEPEGMAVSP-DGKIVVNTSETTNMAHFIDTKTYEIVDNVLV-DQRPRFAEFTADGKELWVSSEIGGTV 181 (300)
T ss_pred CeEEeEeeC-CCCcceEEECC-CCCEEEEEecCCCeEEEEeCCCCeEEEEEEc-CCCccEEEECCCCCEEEEEcCCCCEE
Confidence 887777753 33468899999 899998888775 567789988877655432 3456789999999988544 569999
Q ss_pred EEEECCCCccccceEEeecCCCC-CCCcceEEEcCCCCEEEE--EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEc
Q 001319 913 CVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLV--VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS 989 (1101)
Q Consensus 913 ~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~--~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s 989 (1101)
++||+.+++............+. ......++|+|+++++++ +.++.+.+||..+++.+..+.. ...+.+++|+
T Consensus 182 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~----~~~~~~~~~~ 257 (300)
T TIGR03866 182 SVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLV----GQRVWQLAFT 257 (300)
T ss_pred EEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEe----CCCcceEEEC
Confidence 99999998765443322111110 123456889999998655 3477899999999888766533 4578999999
Q ss_pred cCCCEEEEE-eCCCcEEEEeCCCCceeEeeC
Q 001319 990 CNSQLVFAT-FCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 990 ~dg~~l~s~-~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
|+|++|+++ ..+|.|+|||+.+++.+.++.
T Consensus 258 ~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 258 PDEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 999999886 469999999999999988886
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.4e-20 Score=204.41 Aligned_cols=286 Identities=13% Similarity=0.179 Sum_probs=207.3
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcce
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v 588 (1101)
..+++++.|+.|++||+.+++....+..+. .+.+++|+|+++.+++++. .++.|++||..+++....+..+.. +
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~-~~~~l~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~~--~ 75 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ-RPRGITLSKDGKLLYVCAS---DSDTIQVIDLATGEVIGTLPSGPD--P 75 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC-CCCceEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEeccCCCC--c
Confidence 468899999999999998888777666543 3678999999998755432 378899999999988877765433 4
Q ss_pred EEEEEeCCCCEEEEE-eCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc-EEEEEccccccccc
Q 001319 589 GVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIGLRSLR 666 (1101)
Q Consensus 589 ~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-i~iwd~~~~~~~~~ 666 (1101)
..++++|+++.++++ +.++.+++||+.+++.+..+.... .+.+++|+|+|.+++++..++. +.+||..++. ...
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~---~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~-~~~ 151 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGV---EPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE-IVD 151 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCC---CcceEEECCCCCEEEEEecCCCeEEEEeCCCCe-EEE
Confidence 568899999988665 568999999999988777665322 3578999999999998887653 5556654320 000
Q ss_pred cccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEee
Q 001319 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 746 (1101)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 746 (1101)
.
T Consensus 152 ~------------------------------------------------------------------------------- 152 (300)
T TIGR03866 152 N------------------------------------------------------------------------------- 152 (300)
T ss_pred E-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-c-C
Q 001319 747 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-T-G 824 (1101)
Q Consensus 747 ~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-d 824 (1101)
+. ......+++|++||++++++ . +
T Consensus 153 -----~~-------------------------------------------------~~~~~~~~~~s~dg~~l~~~~~~~ 178 (300)
T TIGR03866 153 -----VL-------------------------------------------------VDQRPRFAEFTADGKELWVSSEIG 178 (300)
T ss_pred -----EE-------------------------------------------------cCCCccEEEECCCCCEEEEEcCCC
Confidence 00 11123457888898877544 3 7
Q ss_pred CeEEEEECCCceEEEEeeCCC-----C--CeeEEEEecCCCCEEEE-EeCCCcEEEEEeecceEEEeeccCCCCeeEEEE
Q 001319 825 GKISLFNMMTFKVMTTFMSPP-----P--ASTFLAFHPQDNNIIAI-GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 896 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~-----~--~i~~l~~s~~~~~~la~-g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 896 (1101)
+.|++||+.+++.+..+..+. . ....++|+| +++++++ ...++.+.+||+.+++.+..+. +...+.+++|
T Consensus 179 ~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~-dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~ 256 (300)
T TIGR03866 179 GTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTK-DGKTAFVALGPANRVAVVDAKTYEVLDYLL-VGQRVWQLAF 256 (300)
T ss_pred CEEEEEEcCcceeeeeeeecccccccccCCccceEECC-CCCEEEEEcCCCCeEEEEECCCCcEEEEEE-eCCCcceEEE
Confidence 889999999888776654321 1 234688999 7776544 4556789999999888776553 4457999999
Q ss_pred cCCCCEEEEE-eCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcC
Q 001319 897 STSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 946 (1101)
Q Consensus 897 s~d~~~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 946 (1101)
+|+|++|+++ +.++.|++||+.+++.+...... .....++++|
T Consensus 257 ~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~-------~~~~~~~~~~ 300 (300)
T TIGR03866 257 TPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVG-------RLPWGVVVRP 300 (300)
T ss_pred CCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEcc-------cccceeEeCC
Confidence 9999999886 46899999999998866555432 3446666654
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.2e-22 Score=201.30 Aligned_cols=253 Identities=16% Similarity=0.229 Sum_probs=202.5
Q ss_pred cccCCccEEEEEEccC-CCEEEEEECCCeEEEEeecCCcccc-------cceeeecccCcEEEEEEecCCCceEEEEecC
Q 001319 402 FKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~-------~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~ 473 (1101)
..-|.+.|+.+..-|. ...+|+++..+.|.|||........ +-..|.||.+.-.+++|++.... .|++++.
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g-~Lls~~~ 198 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEG-TLLSGSD 198 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccce-eEeeccC
Confidence 3458999999999995 5567778888999999997543322 22268899998889999998765 7999999
Q ss_pred CceEEEEEc--CCc------eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC--CCCeeeeccCCCCceEE
Q 001319 474 DKLIKVWEL--SGR------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD--TMGSRVDYDAPGHWCTT 543 (1101)
Q Consensus 474 d~~v~iwd~--~~~------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~--~~~~~~~~~~~~~~v~~ 543 (1101)
|++|++||. .+. ....+.+|...|..++|++... .++++++.|+.+.|||.+ +.+.......|...+.|
T Consensus 199 d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~-~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~ 277 (422)
T KOG0264|consen 199 DHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHE-DLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNC 277 (422)
T ss_pred CCcEEEEeccccccCCccccceEEeecCCcceehhhccccch-hhheeecCCCeEEEEEcCCCCCCCcccccccCCceeE
Confidence 999999992 222 2467789999999999998754 689999999999999999 55566677888999999
Q ss_pred EEEccCCC-EEEEeecCCCCCceEEEEeCCCC-eeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeee
Q 001319 544 MLYSADGS-RLFSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 544 ~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
++|+|-+. .||+++. |++|.+||++.- +++.++.+|.. .|..+.|+|.. ..|++++.|+.+.+||+..-...
T Consensus 278 ~~fnp~~~~ilAT~S~----D~tV~LwDlRnL~~~lh~~e~H~d-ev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~e 352 (422)
T KOG0264|consen 278 VAFNPFNEFILATGSA----DKTVALWDLRNLNKPLHTFEGHED-EVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEE 352 (422)
T ss_pred EEeCCCCCceEEeccC----CCcEEEeechhcccCceeccCCCc-ceEEEEeCCCCCceeEecccCCcEEEEeccccccc
Confidence 99999655 5566665 999999999874 57888999988 89999999975 56677889999999998752222
Q ss_pred ------------EeeccCCCCCCCCeeEEecCCC-EEEEEEcCCcEEEEEcccc
Q 001319 621 ------------TSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 621 ------------~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~ 661 (1101)
..+...+|...|..+.|+|+.. .|++.+.|+.+.||.....
T Consensus 353 q~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~~ 406 (422)
T KOG0264|consen 353 QSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAEN 406 (422)
T ss_pred cChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeecccc
Confidence 1244556777899999999765 5667788999999987643
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.8e-21 Score=202.08 Aligned_cols=315 Identities=15% Similarity=0.203 Sum_probs=230.8
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.+.||++.|.++...|.|. +|++|+.||+|+||. .+|+|++++. ..+.|.+|+|+|.++..+|+++-.+. +.+-+
T Consensus 395 vyrGHtg~Vr~iSvdp~G~--wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~-~~ivn 470 (733)
T KOG0650|consen 395 VYRGHTGLVRSISVDPSGE--WLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGEC-VLIVN 470 (733)
T ss_pred eEeccCCeEEEEEecCCcc--eeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCc-eEEeC
Confidence 5779999999999999999 899999999999999 9999999887 45589999999998877776665554 55554
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe----eEEEecccCCcceEEEEEeCCCCEE
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
..-+..... -+....|+.+-.....+..+..|.-.... -++..-.|.. .+..+.|+..|.||
T Consensus 471 p~~G~~~e~-------------~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k-~i~~vtWHrkGDYl 536 (733)
T KOG0650|consen 471 PIFGDRLEV-------------GPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPK-SIRQVTWHRKGDYL 536 (733)
T ss_pred ccccchhhh-------------cchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCC-ccceeeeecCCceE
Confidence 322211110 01111222221111124466778654211 1223333444 78999999999999
Q ss_pred EEEe---CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCccccc
Q 001319 601 LAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALR 677 (1101)
Q Consensus 601 ~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 677 (1101)
++.. ....|.|+++........+.... +.|.++.|+|...+|++++. ..|+|||+... ..++.+..
T Consensus 537 atV~~~~~~~~VliHQLSK~~sQ~PF~ksk--G~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kq-elvKkL~t------- 605 (733)
T KOG0650|consen 537 ATVMPDSGNKSVLIHQLSKRKSQSPFRKSK--GLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQ-ELVKKLLT------- 605 (733)
T ss_pred EEeccCCCcceEEEEecccccccCchhhcC--CceeEEEecCCCceEEEEec-cceEEEehhHH-HHHHHHhc-------
Confidence 9965 34679999998776655553333 36899999999999988875 68999998654 22222211
Q ss_pred CcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeec
Q 001319 678 TPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS 757 (1101)
Q Consensus 678 ~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~ 757 (1101)
T Consensus 606 -------------------------------------------------------------------------------- 605 (733)
T KOG0650|consen 606 -------------------------------------------------------------------------------- 605 (733)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECC-Cc
Q 001319 758 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMM-TF 835 (1101)
Q Consensus 758 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~-~~ 835 (1101)
....|..++++|.|.-|+.++ |+++..||+. +.
T Consensus 606 ---------------------------------------------g~kwiS~msihp~GDnli~gs~d~k~~WfDldlss 640 (733)
T KOG0650|consen 606 ---------------------------------------------GSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSS 640 (733)
T ss_pred ---------------------------------------------CCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCc
Confidence 223366788888888887777 8889999987 34
Q ss_pred eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee------cc---eEEEeeccCCCC----eeEEEEcCCCCE
Q 001319 836 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR------VD---EVKSKLKGHQKR----ITGLAFSTSLNI 902 (1101)
Q Consensus 836 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~------~~---~~~~~~~~h~~~----V~~l~~s~d~~~ 902 (1101)
++.+++..|...+++++|++ .-.++++|+.||++.||.-. .. -++..+.+|... |..+.|+|...+
T Consensus 641 kPyk~lr~H~~avr~Va~H~-ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpW 719 (733)
T KOG0650|consen 641 KPYKTLRLHEKAVRSVAFHK-RYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPW 719 (733)
T ss_pred chhHHhhhhhhhhhhhhhcc-ccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCce
Confidence 67788889999999999999 88999999999999998533 11 245778899766 999999999999
Q ss_pred EEEEeCCCcEEEE
Q 001319 903 LVSSGADAQLCVW 915 (1101)
Q Consensus 903 l~s~s~Dg~v~lw 915 (1101)
|+++|.||+|++|
T Consensus 720 LfsAGAd~tirlf 732 (733)
T KOG0650|consen 720 LFSAGADGTIRLF 732 (733)
T ss_pred EEecCCCceEEee
Confidence 9999999999998
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=197.16 Aligned_cols=293 Identities=16% Similarity=0.241 Sum_probs=222.7
Q ss_pred CCCcEEEEEEecCCc-eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCE
Q 001319 343 QGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~ 420 (1101)
|...|++++|+|.-. .++|+|...|.|-+||+.+.+.... ....+..|.++|.++.|+| +-..
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d---------------~v~~f~~hs~~Vs~l~F~P~n~s~ 249 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKD---------------GVYLFTPHSGPVSGLKFSPANTSQ 249 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccC---------------ceEEeccCCccccceEecCCChhh
Confidence 678999999999865 7899999999999999975443332 1124788999999999999 5568
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~ 498 (1101)
+.+.+.||+|+.-|++++..- .+..+..-...+..+.|+.+.. .++.+..=|...+|| ..+.....+.-|...|.
T Consensus 250 i~ssSyDGtiR~~D~~~~i~e-~v~s~~~d~~~fs~~d~~~e~~--~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~ 326 (498)
T KOG4328|consen 250 IYSSSYDGTIRLQDFEGNISE-EVLSLDTDNIWFSSLDFSAESR--SVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKIT 326 (498)
T ss_pred eeeeccCceeeeeeecchhhH-HHhhcCccceeeeeccccCCCc--cEEEeecccceEEEEeecCCccchhhhhhhcccc
Confidence 889999999999999986432 2223333455788899998888 577777777999999 55566777888999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCee----eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC--
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-- 572 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-- 572 (1101)
+|+++|... .++++++.|++.+|||++..... .....|...|.+..|||.+-.|++.+. |..|+|||..
T Consensus 327 sv~~NP~~p-~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~----D~~IRv~dss~~ 401 (498)
T KOG4328|consen 327 SVALNPVCP-WFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQ----DNEIRVFDSSCI 401 (498)
T ss_pred eeecCCCCc-hheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeecc----CCceEEeecccc
Confidence 999998754 78999999999999999875443 344567789999999999888888775 8999999983
Q ss_pred --CCeeEEEecccCC--c--ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC-eeEEecCCC-EE
Q 001319 573 --EGTIKRTYAGFRK--K--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGN-LL 644 (1101)
Q Consensus 573 --~~~~~~~~~~~~~--~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~g~-~l 644 (1101)
.-.+..++.-... . ......|.|+.+++++|-.-..|-|+|-..++.+..+..+... .|. -..|+|-+. ++
T Consensus 402 sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~-tI~~vn~~HP~~~~~~ 480 (498)
T KOG4328|consen 402 SAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESS-TIPSVNEFHPMRDTLA 480 (498)
T ss_pred cccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCcccc-ccccceeeccccccee
Confidence 2333333322111 1 1223689999999999998889999999999877776544322 343 357999887 44
Q ss_pred EEEEcCCcEEEEEcc
Q 001319 645 AVTTADNGFKILANA 659 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~ 659 (1101)
+.++..|.|+||...
T Consensus 481 aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 481 AGGNSSGKIYVFTNK 495 (498)
T ss_pred ccCCccceEEEEecC
Confidence 545567889888654
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.5e-23 Score=222.30 Aligned_cols=235 Identities=17% Similarity=0.331 Sum_probs=212.8
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+..|...|.|+..-..++.+++|+.|..+-+|.+.....+. .+.+|..+|.++.|+++.. +|++|+.+|+|++||
T Consensus 24 ~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~---S~~~hespIeSl~f~~~E~--LlaagsasgtiK~wD 98 (825)
T KOG0267|consen 24 FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT---SLTGHESPIESLTFDTSER--LLAAGSASGTIKVWD 98 (825)
T ss_pred hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh---eeeccCCcceeeecCcchh--hhcccccCCceeeee
Confidence 45588899999987789999999999999999987765554 5889999999999999998 899999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+++.++++.||...+..+.|+| -+.+.++|+.|+.+++||++..++...+.+|...+..+.|+|+|++++.++.
T Consensus 99 leeAk~vrtLtgh~~~~~sv~f~P--~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~e-- 174 (825)
T KOG0267|consen 99 LEEAKIVRTLTGHLLNITSVDFHP--YGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGE-- 174 (825)
T ss_pred hhhhhhhhhhhccccCcceeeecc--ceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCC--
Confidence 99999999999999999999988 5589999999999999999999999999999999999999999999999985
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
|..+++||...|+....|.+|.. .+..+.|+|..-.+..|+.|+++++||+++.+.+...... ...|.+.+|+|+
T Consensus 175 --d~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~--~~~v~~~~fn~~ 249 (825)
T KOG0267|consen 175 --DNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPE--TDGVRSLAFNPD 249 (825)
T ss_pred --cceeeeecccccccccccccccc-cccccccCchhhhhccCCCCceeeeeccceeEEeeccCCc--cCCceeeeecCC
Confidence 79999999999999999999887 7888999998888888999999999999998888776654 457999999999
Q ss_pred CCEEEEEEcC
Q 001319 641 GNLLAVTTAD 650 (1101)
Q Consensus 641 g~~l~~~~~d 650 (1101)
+..+++|...
T Consensus 250 ~~~~~~G~q~ 259 (825)
T KOG0267|consen 250 GKIVLSGEQI 259 (825)
T ss_pred ceeeecCchh
Confidence 9999888654
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.89 E-value=4.2e-21 Score=183.38 Aligned_cols=298 Identities=16% Similarity=0.237 Sum_probs=216.0
Q ss_pred CCCeeEEec-CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 631 NLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 631 ~v~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
.|+.+.+.+ .|+++++|+.||.|.+||+++....-..- .
T Consensus 45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~----l------------------------------------ 84 (397)
T KOG4283|consen 45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASG----L------------------------------------ 84 (397)
T ss_pred ccceeeeccccceEEeecCCCccEEEEEeccccchhhcc----c------------------------------------
Confidence 688898888 79999999999999999997652110000 0
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCc-ccEEEeecCCeEEEEEecCCCCCCCCCeeeecccccccc
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 788 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1101)
+. .....+..+...+|.-.|..+.|-|-. ..+.+++-|.++++||.++-....
T Consensus 85 ------i~-----k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~--------------- 138 (397)
T KOG4283|consen 85 ------IA-----KHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAV--------------- 138 (397)
T ss_pred ------ee-----heeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccceeeE---------------
Confidence 00 000011223335588888888888754 445556679999999876422100
Q ss_pred CCccceeeccCCCCCCCCEeEEEecCCC---CeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEE
Q 001319 789 SSGLLMANDVAGVNLEEAVPCIALSKND---SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg---~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
. +..++.|.+-++||-. -++|+|. +-+|++-|+.+|.....+.+|...|.++.|+|...-.||+|
T Consensus 139 ------~-----F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatg 207 (397)
T KOG4283|consen 139 ------D-----FKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVLATG 207 (397)
T ss_pred ------E-----eecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEEEec
Confidence 0 1255667777777743 3677777 56799999999999999999999999999999667788999
Q ss_pred eCCCcEEEEEeecc-eEEEe--------------eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe
Q 001319 865 TEDSTIHIYNVRVD-EVKSK--------------LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~-~~~~~--------------~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 929 (1101)
+.||.|++||+... .+... -.+|.+.|..++|+.|+.++++++.|..+++|+..+|+........
T Consensus 208 saDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~ 287 (397)
T KOG4283|consen 208 SADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGP 287 (397)
T ss_pred CCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccccccccc
Confidence 99999999999754 22222 2467889999999999999999999999999999988754322221
Q ss_pred ecCCCCCCCcceEEEcCCCCEEE-EEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 930 IPAGKTPTGDTRVQFNADQVRML-VVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
............+. +.+...++ .-.++.+.++++-.+..++.+..| ...|.|.+|-|+=+.+.+|..|+.|..|-
T Consensus 288 ~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~ir~l~~h---~k~i~c~~~~~~fq~~~tg~~d~ni~~w~ 363 (397)
T KOG4283|consen 288 IIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSFVRRLSTH---LKRINCAAYRPDFEQCFTGDMNGNIYMWS 363 (397)
T ss_pred ccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceEEEeeecc---cceeeEEeecCchhhhhccccCCcccccc
Confidence 11111111111222 23333333 344699999999999999999887 88999999999999999999999999998
Q ss_pred C
Q 001319 1009 A 1009 (1101)
Q Consensus 1009 ~ 1009 (1101)
.
T Consensus 364 p 364 (397)
T KOG4283|consen 364 P 364 (397)
T ss_pred c
Confidence 6
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.88 E-value=3.5e-21 Score=201.38 Aligned_cols=241 Identities=10% Similarity=0.161 Sum_probs=179.0
Q ss_pred ccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 399 ASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 399 ~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
..++.||++.|.++...|.|.+||+|+.||+|+||.+.+|.|++.. ...+.|.|++|+|.+...+|+++-. ..+.
T Consensus 393 ~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~----~~d~~I~~vaw~P~~~~~vLAvA~~-~~~~ 467 (733)
T KOG0650|consen 393 ALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTV----QFDSEIRSVAWNPLSDLCVLAVAVG-ECVL 467 (733)
T ss_pred eeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEE----eecceeEEEEecCCCCceeEEEEec-CceE
Confidence 3568999999999999999999999999999999999999999843 2345799999999988745555544 4477
Q ss_pred EEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEe----ccCCeEEEEecCCC----CeeeeccCCCCceEEEEEccC
Q 001319 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----AIDGKIKAWLYDTM----GSRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 479 iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~----~~d~~i~~wd~~~~----~~~~~~~~~~~~v~~~~~s~d 549 (1101)
|-+ .-|..+..-. +. ..|+++ ..++.+..|.-... ..+.....+...|..+.|+..
T Consensus 468 ivnp~~G~~~e~~~--t~-------------ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 468 IVNPIFGDRLEVGP--TK-------------ELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred EeCccccchhhhcc--hh-------------hhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 777 5453221110 00 111111 23456777854421 112344457778999999999
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
|.||++...+ ++...|.|.++...+...-|....+ .+.++.|+|...++++++. ..|+|||+....++..+... .
T Consensus 533 GDYlatV~~~-~~~~~VliHQLSK~~sQ~PF~kskG-~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~tg--~ 607 (733)
T KOG0650|consen 533 GDYLATVMPD-SGNKSVLIHQLSKRKSQSPFRKSKG-LVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLTG--S 607 (733)
T ss_pred CceEEEeccC-CCcceEEEEecccccccCchhhcCC-ceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhcC--C
Confidence 9999998753 3467799999988777766655554 7888999999999988875 58999999987777666533 3
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 664 (1101)
..|..++.+|.|..|++++.|+.+..+|+.-..+.
T Consensus 608 kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP 642 (733)
T KOG0650|consen 608 KWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP 642 (733)
T ss_pred eeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch
Confidence 37889999999999999999999999998755333
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.5e-21 Score=201.19 Aligned_cols=289 Identities=17% Similarity=0.210 Sum_probs=211.0
Q ss_pred EEEec--CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC
Q 001319 350 MDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 350 v~fsp--dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d 427 (1101)
+.|++ .-+++||.+..||.|.++|...-.-... +.+......|.+.|..+.|-|-...|++++.|
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~e-------------e~~lk~~~aH~nAifDl~wapge~~lVsasGD 121 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLE-------------ERQLKKPLAHKNAIFDLKWAPGESLLVSASGD 121 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcchh-------------hhhhcccccccceeEeeccCCCceeEEEccCC
Confidence 44543 4567999999999999999865332100 00112366799999999999977788999999
Q ss_pred CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCc--------------------
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR-------------------- 485 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~-------------------- 485 (1101)
.++++||++++++.... .+.||.+.|.+++|.|++.. .|++|+.||.|.||| .++.
T Consensus 122 sT~r~Wdvk~s~l~G~~-~~~GH~~SvkS~cf~~~n~~-vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 122 STIRPWDVKTSRLVGGR-LNLGHTGSVKSECFMPTNPA-VFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred ceeeeeeeccceeecce-eecccccccchhhhccCCCc-ceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 99999999998877643 47799999999999999987 899999999999999 3330
Q ss_pred ------eeEEeecCCcCeEE----EecccCCCccEEEEecc-CCeEEEEecCCCCeeee--------ccCC---CCceEE
Q 001319 486 ------KLFNFEGHEAPVYS----ICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVD--------YDAP---GHWCTT 543 (1101)
Q Consensus 486 ------~~~~~~~h~~~v~~----v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~--------~~~~---~~~v~~ 543 (1101)
.+.....+...|.+ +.| . |...|++++. |+.|+|||++....... +..+ ...+.+
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f-k--De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~n 276 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF-K--DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVN 276 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE-e--ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEE
Confidence 01122234444443 443 2 4468888888 99999999987654432 2222 235788
Q ss_pred EEEccCCCEEEEeecCCCCCceEEEEeCCCC--eeEEEecccCCcceE-EEEEeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNG-VVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 544 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
+.....|.+|++.+. |+.|+.|++.+- .++..+.++....+. .-..+|++.++++|+.|...++|.+.+.+.-
T Consensus 277 L~lDssGt~L~AsCt----D~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~ 352 (720)
T KOG0321|consen 277 LILDSSGTYLFASCT----DNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAP 352 (720)
T ss_pred EEecCCCCeEEEEec----CCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCC
Confidence 888888899887775 899999998753 345555555442322 2457899999999999999999999876543
Q ss_pred EeeccCCCCCCCCeeEEecC-CCEEEEEEcCCcEEEEEcccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
..+. .++...|++++|.|. -.-++++++|..+++|++.++
T Consensus 353 ~~~l-~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~ 393 (720)
T KOG0321|consen 353 PALL-LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNG 393 (720)
T ss_pred hhhh-hCcceEEEEEeeccccCCCceeeccCcceEEEeccCc
Confidence 3221 234557899999883 345667799999999999766
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-20 Score=199.64 Aligned_cols=287 Identities=14% Similarity=0.138 Sum_probs=207.5
Q ss_pred ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEE
Q 001319 750 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 828 (1101)
Q Consensus 750 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~ 828 (1101)
..|+.+.++|.|.++|.....+.++.. ...-| ..|...|..+.|-|....|++++ |.+++
T Consensus 65 HiLavadE~G~i~l~dt~~~~fr~ee~-----~lk~~--------------~aH~nAifDl~wapge~~lVsasGDsT~r 125 (720)
T KOG0321|consen 65 HILAVADEDGGIILFDTKSIVFRLEER-----QLKKP--------------LAHKNAIFDLKWAPGESLLVSASGDSTIR 125 (720)
T ss_pred ceEEEecCCCceeeecchhhhcchhhh-----hhccc--------------ccccceeEeeccCCCceeEEEccCCceee
Confidence 445666678999999865433321110 00111 13999999999999666777777 88999
Q ss_pred EEECCCceEEEE--eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce---------------------------
Q 001319 829 LFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------------------- 879 (1101)
Q Consensus 829 vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~--------------------------- 879 (1101)
+||+++.+++.. +.+|.+.|.++||.|.+...+++|+.||.|.|||+.-..
T Consensus 126 ~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~k 205 (720)
T KOG0321|consen 126 PWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKK 205 (720)
T ss_pred eeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhc
Confidence 999999998877 889999999999999888999999999999999986421
Q ss_pred EEEeeccCCCCeeE---EEEcCCCCEEEEEeC-CCcEEEEECCCCccccce------EEeecCCCCCCCcceEEEcCCCC
Q 001319 880 VKSKLKGHQKRITG---LAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSV------TIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~---l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~------~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
.+....+|...|.+ +.+..|...||++|. |+.|+|||+......... ..... ....-.+.++..+..|.
T Consensus 206 r~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~-skrs~G~~nL~lDssGt 284 (720)
T KOG0321|consen 206 RIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTH-SKRSVGQVNLILDSSGT 284 (720)
T ss_pred cccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCc-ccceeeeEEEEecCCCC
Confidence 11223445556666 666778899999988 999999999875432211 11111 11114567777788888
Q ss_pred EEEE-EeCCeEEEEEcCCcee--eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC
Q 001319 950 RMLV-VHETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1026 (1101)
Q Consensus 950 ~l~~-~~d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1026 (1101)
+|.+ +.|+.|++|++.+... +..+..+.. ..--..-..|||+.+|++|+.|...++|.+.+.+.-..+.
T Consensus 285 ~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~-~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l------- 356 (720)
T KOG0321|consen 285 YLFASCTDNSIYFYNMRSLSISPVAEFSGKLN-SSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALL------- 356 (720)
T ss_pred eEEEEecCCcEEEEeccccCcCchhhccCccc-ceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhh-------
Confidence 8887 6799999999986543 222222211 2222334568999999999999999999999876543332
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1027 SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1027 ~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
-.|.+.++.++|.|..-.-++|+++|-+++||++..+-
T Consensus 357 ----~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 357 ----LGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ----hCcceEEEEEeeccccCCCceeeccCcceEEEeccCch
Confidence 24556778999999877889999999999999996554
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.6e-22 Score=212.68 Aligned_cols=232 Identities=10% Similarity=0.189 Sum_probs=208.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
|...|.|+..-..++ ++++|+.|..+-+|.+..-..+. .+.+|+.+|.|+.|+++..+|+
T Consensus 27 hsaav~~lk~~~s~r-~~~~Gg~~~k~~L~~i~kp~~i~-------------------S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 27 HSAAVGCLKIRKSSR-SLVTGGEDEKVNLWAIGKPNAIT-------------------SLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhceeeeeccce-eeccCCCceeeccccccCCchhh-------------------eeeccCCcceeeecCcchhhhc
Confidence 777888888855666 67899999999999986544332 2789999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+|+.+|+|++||++.++.++ +|.||...+..++|+|-+. +.++|+.|+.+++|| ....|.+.+.+|...|..+.
T Consensus 87 agsasgtiK~wDleeAk~vr---tLtgh~~~~~sv~f~P~~~--~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~ 161 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVR---TLTGHLLNITSVDFHPYGE--FFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLR 161 (825)
T ss_pred ccccCCceeeeehhhhhhhh---hhhccccCcceeeeccceE--EeccccccccceehhhhccCceeeecCCcceeEEEe
Confidence 99999999999999998888 7889999999999999999 789999999999999 76889999999999999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
|+| +|.++++++.|.++++||...++....+..|...+.++.|.|..-+++.|+. |.++++||+++.+.+....
T Consensus 162 lsP--~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~----d~tv~f~dletfe~I~s~~ 235 (825)
T KOG0267|consen 162 LSP--DGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSS----DRTVRFWDLETFEVISSGK 235 (825)
T ss_pred ecC--CCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCC----CceeeeeccceeEEeeccC
Confidence 987 7799999999999999999999999999999999999999999999999986 9999999999999888877
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
.... .+.+.+|+|++..+++|...
T Consensus 236 ~~~~-~v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 236 PETD-GVRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred CccC-CceeeeecCCceeeecCchh
Confidence 7655 78999999999888887654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.9e-19 Score=187.06 Aligned_cols=274 Identities=16% Similarity=0.219 Sum_probs=196.4
Q ss_pred cEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee
Q 001319 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1101)
Q Consensus 453 ~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~ 531 (1101)
.|..++|-|||..+++++ +..+.+|| .+|..+.++++|.+.|.+++|+. ||+.+++|+.|+.|.+|.-...+ .
T Consensus 14 ci~d~afkPDGsqL~lAA---g~rlliyD~ndG~llqtLKgHKDtVycVAys~--dGkrFASG~aDK~VI~W~~klEG-~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA---GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAK--DGKRFASGSADKSVIIWTSKLEG-I 87 (1081)
T ss_pred chheeEECCCCceEEEec---CCEEEEEeCCCcccccccccccceEEEEEEcc--CCceeccCCCceeEEEecccccc-e
Confidence 799999999999744443 44789999 99999999999999999999976 78999999999999999754332 2
Q ss_pred eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 532 VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 532 ~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
.. -.|+..|.||.|+|-...+++|+- ...-+|........+. + ....+.+++|..||.+++.|-.+|+|.+
T Consensus 88 Lk-YSH~D~IQCMsFNP~~h~LasCsL-----sdFglWS~~qK~V~K~-k--ss~R~~~CsWtnDGqylalG~~nGTIsi 158 (1081)
T KOG1538|consen 88 LK-YSHNDAIQCMSFNPITHQLASCSL-----SDFGLWSPEQKSVSKH-K--SSSRIICCSWTNDGQYLALGMFNGTISI 158 (1081)
T ss_pred ee-eccCCeeeEeecCchHHHhhhcch-----hhccccChhhhhHHhh-h--hheeEEEeeecCCCcEEEEeccCceEEe
Confidence 22 247788999999999999999974 3356787665433221 1 1125777899999999999999999999
Q ss_pred EECCCCeeeEeeccCCCCCCCCeeEEecCCC-----EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeee
Q 001319 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-----LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-----~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 686 (1101)
-+....+.+..-...+...+|.+++|+|... .+++..-..++.++.+...
T Consensus 159 RNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~------------------------- 213 (1081)
T KOG1538|consen 159 RNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGK------------------------- 213 (1081)
T ss_pred ecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecce-------------------------
Confidence 8765444444434444567899999999642 2222222222222221100
Q ss_pred eccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 687 VSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 687 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
T Consensus 214 -------------------------------------------------------------------------------- 213 (1081)
T KOG1538|consen 214 -------------------------------------------------------------------------------- 213 (1081)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCC
Q 001319 767 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP 845 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~ 845 (1101)
.+.... ...-...|+.+-++|.++..|+ |+.+.+|.- .|-.+.++....
T Consensus 214 --------------------------~Igk~r---~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D 263 (1081)
T KOG1538|consen 214 --------------------------QIGKDR---ALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQD 263 (1081)
T ss_pred --------------------------eecccc---cCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccc
Confidence 000000 0223345777788888877776 777888754 466666666667
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 846 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
..|..++..| +++.++.|+.||+|--|++..
T Consensus 264 ~WIWtV~~~P-NsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 264 SWIWTVQAKP-NSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred eeEEEEEEcc-CCceEEEEEccCeeehhhhHH
Confidence 7899999999 999999999999999998753
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.2e-21 Score=208.12 Aligned_cols=248 Identities=14% Similarity=0.219 Sum_probs=195.7
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGVA 424 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~las~ 424 (1101)
.+..|+|+.--..+||+++..|.|.+||+.... ..+ +...|..|+..|+++.|++- -.+|++|
T Consensus 89 S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~--rnk--------------~l~~f~EH~Rs~~~ldfh~tep~iliSG 152 (839)
T KOG0269|consen 89 SAADVKWGQLYSNLIATCSTNGVISVWDLNKSI--RNK--------------LLTVFNEHERSANKLDFHSTEPNILISG 152 (839)
T ss_pred ehhhcccccchhhhheeecCCCcEEEEecCccc--cch--------------hhhHhhhhccceeeeeeccCCccEEEec
Confidence 455677775555588999999999999997621 100 11248889999999999994 5688899
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEEec
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICP 502 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~ 502 (1101)
+.||+|++||+...+... ++.+....|++++|+|-..+ .++++.+.|.+++|| ...++...+..|.++|.++.|
T Consensus 153 SQDg~vK~~DlR~~~S~~---t~~~nSESiRDV~fsp~~~~-~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 153 SQDGTVKCWDLRSKKSKS---TFRSNSESIRDVKFSPGYGN-KFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNW 228 (839)
T ss_pred CCCceEEEEeeecccccc---cccccchhhhceeeccCCCc-eEEEecCCceEEEeeccCchhHHHHhhcccCceEEEee
Confidence 999999999999877655 56678899999999997665 899999999999999 566788899999999999999
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeeeeccC-CCCceEEEEEccCCCE-EEEeecCCCCCceEEEEeCCCCe-eEEE
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGT-IKRT 579 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~-l~~~~~~~~~~~~i~iwd~~~~~-~~~~ 579 (1101)
+| ++.+|++||.|++|+|||+.+......... ...++..+.|-|+..+ |++++. -.+-.|++||++..- +..+
T Consensus 229 hP--nr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsm--v~dtsV~VWDvrRPYIP~~t 304 (839)
T KOG0269|consen 229 HP--NREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSM--VVDTSVHVWDVRRPYIPYAT 304 (839)
T ss_pred cC--CCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhc--cccceEEEEeecccccccee
Confidence 99 678999999999999999986655443333 3457899999998775 445543 347789999998765 4456
Q ss_pred ecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCe
Q 001319 580 YAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 580 ~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
+..|.. .++.++|.. |...+.+++.||+|..-.++++.
T Consensus 305 ~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 305 FLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eeccCc-cccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 777776 788888865 45677888999988776655543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.4e-19 Score=174.60 Aligned_cols=255 Identities=11% Similarity=0.155 Sum_probs=191.5
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc-ccccceeeecccCcEEEEEEecC--CCceEEEEecCCceE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLI 477 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v 477 (1101)
+-.+|.+-|.++.|.+-|+.+|+|+.|++|+|||.+... ........+.|.+.|..+.|.+. |+ .+++++.|+++
T Consensus 8 i~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGq--vvA~cS~Drtv 85 (361)
T KOG2445|consen 8 IDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQ--VVATCSYDRTV 85 (361)
T ss_pred cccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccc--eEEEEecCCce
Confidence 356799999999999999999999999999999965433 23334467899999999999875 66 89999999999
Q ss_pred EEEEc-CC---------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee------eecc------
Q 001319 478 KVWEL-SG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDYD------ 535 (1101)
Q Consensus 478 ~iwd~-~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~~------ 535 (1101)
.||.. .. ....++....+.|+.|.|.|..-|-.+++++.||.+|||+....... .++.
T Consensus 86 ~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp 165 (361)
T KOG2445|consen 86 SIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPP 165 (361)
T ss_pred eeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCc
Confidence 99983 11 12345666788999999999988999999999999999976543222 1221
Q ss_pred -CCCCceEEEEEccC---CCEEEEeecC-CCCCceEEEEeCCCC----eeEEEecccCCcceEEEEEeCCC----CEEEE
Q 001319 536 -APGHWCTTMLYSAD---GSRLFSCGTS-KDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTTQ----NHFLA 602 (1101)
Q Consensus 536 -~~~~~v~~~~~s~d---~~~l~~~~~~-~~~~~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~~----~~l~~ 602 (1101)
.+.....|+.|+|. ..++++++.+ ...-+.+.||....+ ..+.++.++.. +|+.++|.|+- ..|++
T Consensus 166 ~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~d-pI~di~wAPn~Gr~y~~lAv 244 (361)
T KOG2445|consen 166 GKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTD-PIRDISWAPNIGRSYHLLAV 244 (361)
T ss_pred ccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCC-cceeeeeccccCCceeeEEE
Confidence 23346788999874 3467777642 112236777765433 24456677776 89999999963 46888
Q ss_pred EeCCCcEEEEECCCCe-----------------eeEee-ccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 603 VGEDSQIKFWDMDNVN-----------------ILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 603 ~~~dg~i~iwd~~~~~-----------------~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
++.|| |+||.+.... .+..+ ...+|...|..+.|+-.|..|++.+.||+|++|...
T Consensus 245 A~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 245 ATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred eecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 99999 9999987311 11111 234556689999999999999999999999999754
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-19 Score=182.03 Aligned_cols=303 Identities=15% Similarity=0.214 Sum_probs=215.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
...+|..+.|.+++...+|||+.|..|+||.+..+..-... . ... -...+..|..+|+++.|+|+|..||
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~-~--------~V~-y~s~Ls~H~~aVN~vRf~p~gelLA 81 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGD-M--------KVE-YLSSLSRHTRAVNVVRFSPDGELLA 81 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCc-e--------eEE-EeecccCCcceeEEEEEcCCcCeee
Confidence 46799999999987656799999999999999765432210 0 001 1235889999999999999999999
Q ss_pred EEECCCeEEEEeec--------C-----CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE
Q 001319 423 VAFTKHLIQLYSYA--------G-----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 423 s~~~d~~i~vwd~~--------~-----~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~ 488 (1101)
+|+.+|.|.+|... + .+.....+.+.+|...|..++|+||+. ++++++.|.++++|| ..|+.+.
T Consensus 82 Sg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~--~l~s~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 82 SGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSN--FLVSGSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred ecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCc--eeeeeeccceEEEEEeccceeEe
Confidence 99999999999876 3 122233446789999999999999999 899999999999999 9999999
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-------------------CCC----CceEEEE
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------------------APG----HWCTTML 545 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------------------~~~----~~v~~~~ 545 (1101)
.+..|...|..++|.| -++++++-+.|...+.+.+.......... .|. .....++
T Consensus 160 ~~~dh~~yvqgvawDp--l~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRls 237 (434)
T KOG1009|consen 160 ILDDHEHYVQGVAWDP--LNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLS 237 (434)
T ss_pred eccccccccceeecch--hhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcc
Confidence 9999999999999977 45899999988877766654432221110 011 1235678
Q ss_pred EccCCCEEEEeecCCCC-----CceEEEEeCCC-CeeEEEecccCCcceEEEEEeCC-----------------CCEEEE
Q 001319 546 YSADGSRLFSCGTSKDG-----DSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTT-----------------QNHFLA 602 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~-----~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~-----------------~~~l~~ 602 (1101)
|+|||..+++...--.- .+..++++-.. .++...+.+... ....+.|+|- -+.+++
T Consensus 238 fTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k-~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfa 316 (434)
T KOG1009|consen 238 FTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKK-PALAVRFSPVYYELRPLSSEKFLFVLPYRLVFA 316 (434)
T ss_pred cCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCc-ceEEEEeeeeEEEeccccccccccccccceEEE
Confidence 99999999976431111 12233443322 223333333322 2222333220 123333
Q ss_pred EeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 603 VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
......|++||.++-.++..... -|...+++++|++||..|++.+.||...+..++..
T Consensus 317 iAt~~svyvydtq~~~P~~~v~n-ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 317 IATKNSVYVYDTQTLEPLAVVDN-IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred EeecceEEEeccccccceEEEee-eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 34456899999998777766643 24568999999999999999999999888776654
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=173.68 Aligned_cols=253 Identities=13% Similarity=0.237 Sum_probs=190.3
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CCC
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGN 419 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~ 419 (1101)
+|.+-|.++.|.+-|+++ |+|+.|++|+|||.+....- |. .....+.|.+.|..+.|-+ -|+
T Consensus 11 ~h~DlihdVs~D~~GRRm-AtCSsDq~vkI~d~~~~s~~-------W~--------~Ts~Wrah~~Si~rV~WAhPEfGq 74 (361)
T KOG2445|consen 11 GHKDLIHDVSFDFYGRRM-ATCSSDQTVKIWDSTSDSGT-------WS--------CTSSWRAHDGSIWRVVWAHPEFGQ 74 (361)
T ss_pred CCcceeeeeeecccCcee-eeccCCCcEEEEeccCCCCc-------eE--------EeeeEEecCCcEEEEEecCccccc
Confidence 588999999999999975 99999999999997554321 11 1123677999999999976 699
Q ss_pred EEEEEECCCeEEEEeecC------CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee-----
Q 001319 420 YVGVAFTKHLIQLYSYAG------SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----- 487 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~------~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~----- 487 (1101)
.+|+++.|+++.||.=.. +..-....++......|+++.|.|....+.+++++.||++|||+ .+--.+
T Consensus 75 vvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 75 VVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred eEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchh
Confidence 999999999999997621 11222333566778899999999987777999999999999999 443222
Q ss_pred -EEee-------cCCcCeEEEecccCCC-ccEEEEeccC-----CeEEEEecCCCCee----eeccCCCCceEEEEEccC
Q 001319 488 -FNFE-------GHEAPVYSICPHHKEN-IQFIFSTAID-----GKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 488 -~~~~-------~h~~~v~~v~~~~~~~-~~~l~s~~~d-----~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~d 549 (1101)
..+. .+..+..|+.|+++.- ..+|+.|+.+ +.+.||........ .++..+..+|+.++|.|+
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn 234 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPN 234 (361)
T ss_pred hhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccc
Confidence 2222 4666788888876532 2456666655 48899987766533 356678889999999996
Q ss_pred C----CEEEEeecCCCCCceEEEEeCCCC--------------------eeEEEecccCCcceEEEEEeCCCCEEEEEeC
Q 001319 550 G----SRLFSCGTSKDGDSFLVEWNESEG--------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 550 ~----~~l~~~~~~~~~~~~i~iwd~~~~--------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1101)
- ..||+++. || |+||.+... +.+..+.+|.. .+..+.|+-.|..|.+.|.
T Consensus 235 ~Gr~y~~lAvA~k----Dg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~-~VWrv~wNmtGtiLsStGd 308 (361)
T KOG2445|consen 235 IGRSYHLLAVATK----DG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNG-EVWRVRWNMTGTILSSTGD 308 (361)
T ss_pred cCCceeeEEEeec----Cc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCC-ceEEEEEeeeeeEEeecCC
Confidence 3 35667663 77 999998731 23444666665 8999999999999999999
Q ss_pred CCcEEEEECCC
Q 001319 606 DSQIKFWDMDN 616 (1101)
Q Consensus 606 dg~i~iwd~~~ 616 (1101)
||.|++|...-
T Consensus 309 DG~VRLWkany 319 (361)
T KOG2445|consen 309 DGCVRLWKANY 319 (361)
T ss_pred Cceeeehhhhh
Confidence 99999997653
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.1e-21 Score=216.09 Aligned_cols=297 Identities=15% Similarity=0.256 Sum_probs=226.9
Q ss_pred EEEEEEecCCceEEEEEec----------cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 347 VISMDFHPSHQTLLLVGSS----------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~----------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
-..+||||++..++|+|.. +.++.||.++-...... ++..--.......+.++|++
T Consensus 9 ta~~awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~d--------------lk~~~s~~s~~rF~kL~W~~ 74 (1049)
T KOG0307|consen 9 TATFAWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSD--------------LKPVGSLQSSNRFNKLAWGS 74 (1049)
T ss_pred cceEEecCCCchhhHHHhhhhccccccccccccceeeecccCcccc--------------ccccccccccccceeeeecc
Confidence 3457899999756777643 33455555443221110 00000111355788999999
Q ss_pred CCCE----EEEEECCCeEEEEeecC---CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE
Q 001319 417 DGNY----VGVAFTKHLIQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 417 dg~~----las~~~d~~i~vwd~~~---~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~ 488 (1101)
.|.. ||.|..||.|.+||... +.....+.+...|.+.|..+.|++...+ +|++|+.||.|.||| .+-+.-.
T Consensus 75 ~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~n-lLASGa~~geI~iWDlnn~~tP~ 153 (1049)
T KOG0307|consen 75 YGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGN-LLASGADDGEILIWDLNKPETPF 153 (1049)
T ss_pred cCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCc-eeeccCCCCcEEEeccCCcCCCC
Confidence 8776 88899999999999876 4444455567899999999999999877 899999999999999 4433333
Q ss_pred Ee--ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC--ceEEEEEccCCCEEEEeecCCCCCc
Q 001319 489 NF--EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 489 ~~--~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
++ ....+.|.+++|+.. ...+|++++.+|.+.|||++..+.+..+..+.. .+..++|+|+...-+....+.|+..
T Consensus 154 ~~~~~~~~~eI~~lsWNrk-vqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~P 232 (1049)
T KOG0307|consen 154 TPGSQAPPSEIKCLSWNRK-VSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAP 232 (1049)
T ss_pred CCCCCCCcccceEeccchh-hhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCc
Confidence 33 124567999999754 457899999999999999999988877766655 5789999998875444444567788
Q ss_pred eEEEEeCCCC-eeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC-
Q 001319 565 FLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG- 641 (1101)
Q Consensus 565 ~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g- 641 (1101)
.|.+||++.. ..++.+.+|.. .+.++.|++.+ .++++++.|+.|.+|+.++++.+..+...+. .+..+.|+|..
T Consensus 233 viqlWDlR~assP~k~~~~H~~-GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n--W~fdv~w~pr~P 309 (1049)
T KOG0307|consen 233 VIQLWDLRFASSPLKILEGHQR-GILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN--WCFDVQWCPRNP 309 (1049)
T ss_pred eeEeecccccCCchhhhccccc-ceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc--ceeeeeecCCCc
Confidence 9999998754 46677778776 78889999866 7888999999999999999999999987544 78999999955
Q ss_pred CEEEEEEcCCcEEEEEccccc
Q 001319 642 NLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
..+++++.||.|.|+.+.+..
T Consensus 310 ~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 310 SVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred chhhhheeccceeeeeeecCC
Confidence 488899999999999987663
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-20 Score=201.24 Aligned_cols=296 Identities=12% Similarity=0.152 Sum_probs=222.7
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVG 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~la 422 (1101)
+....+|...++-..+++.| ...+.|+.+....... ++.+.+ . .-..--..+..|+|.. +.++||
T Consensus 39 k~~~nAIs~nr~~~qiv~AG--rs~lklyai~~~~~~~--~~~~~~--------k--~kqn~~~S~~DVkW~~~~~NlIA 104 (839)
T KOG0269|consen 39 KAKANAISVNRDINQIVVAG--RSLLKLYAINPNDFSE--KCNHRF--------K--TKQNKFYSAADVKWGQLYSNLIA 104 (839)
T ss_pred ccccceEeecCCcceeEEec--ccceeeEeeCcccCCc--ceeeec--------c--cccceeeehhhcccccchhhhhe
Confidence 34677788888876664433 3467788776543221 111110 0 0000112455678876 678999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+++..|.|.+||+...-.-+.+..+..|...|+++.|++-..+ +|+|||.||+|++|| ...+...++.+....|..|.
T Consensus 105 T~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~-iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~ 183 (839)
T KOG0269|consen 105 TCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPN-ILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVK 183 (839)
T ss_pred eecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCcc-EEEecCCCceEEEEeeecccccccccccchhhhcee
Confidence 9999999999999873222233367899999999999998877 899999999999999 77778888888889999999
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCC-eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
|+|.. +..++++...|.+++||++... ..+.+..|.++|.++.|+|++.+||+||. |+.|+|||..+++.....
T Consensus 184 fsp~~-~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGR----DK~vkiWd~t~~~~~~~~ 258 (839)
T KOG0269|consen 184 FSPGY-GNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGR----DKMVKIWDMTDSRAKPKH 258 (839)
T ss_pred eccCC-CceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCC----CccEEEEeccCCCcccee
Confidence 99875 5799999999999999998765 45678899999999999999999999996 999999999987766555
Q ss_pred cccCCcceEEEEEeCCCCE-EEEEe--CCCcEEEEECCCCe-eeEeeccCCCCCCCCeeEEec-CCCEEEEEEcCCcEEE
Q 001319 581 AGFRKKSNGVVQFDTTQNH-FLAVG--EDSQIKFWDMDNVN-ILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~-l~~~~--~dg~i~iwd~~~~~-~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~i 655 (1101)
.-+...++..+.|-|+..+ |++++ .|-.|+|||++..- +..++..| ...++.++|.. |...+.+++.|++|..
T Consensus 259 tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH--~~~vt~i~W~~~d~~~l~s~sKD~tv~q 336 (839)
T KOG0269|consen 259 TINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLEH--TDSVTGIAWDSGDRINLWSCSKDGTVLQ 336 (839)
T ss_pred EEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeecc--CccccceeccCCCceeeEeecCccHHHH
Confidence 5555668999999998755 45544 68899999997543 33444433 45788999966 5567888999998766
Q ss_pred EEcccc
Q 001319 656 LANAIG 661 (1101)
Q Consensus 656 wd~~~~ 661 (1101)
-.+.+.
T Consensus 337 h~~kna 342 (839)
T KOG0269|consen 337 HLFKNA 342 (839)
T ss_pred hhhhcc
Confidence 544444
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.1e-17 Score=191.00 Aligned_cols=371 Identities=23% Similarity=0.407 Sum_probs=281.5
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc-ccccceeeeccc-CcEEEEEE-ecCCCceEEEEecCCceEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHV-GAVNDLAF-AYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~l~~h~-~~V~~l~~-s~d~~~~~l~s~~~d~~v~ 478 (1101)
...|...+.++.|.+++..++.++.|+.+.+|+...+. .+. .+.++. ..+..+.+ .+++....+..+..|+.+.
T Consensus 61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~ 137 (466)
T COG2319 61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIK---SLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVK 137 (466)
T ss_pred eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEE---EEeccCCCceeeEEEECCCcceEEeccCCCCccEE
Confidence 56689999999999999999999999999999999876 333 455533 37888887 7777632333345599999
Q ss_pred EEE-cC-CceeEEeecCCcCeEEEecccCCCccEEEEecc-CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC-EEE
Q 001319 479 VWE-LS-GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLF 554 (1101)
Q Consensus 479 iwd-~~-~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~ 554 (1101)
+|| .. ......+..|...|..++|++. +..+++++. |+.+++|+.........+..|...+.+++|+|++. .++
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 215 (466)
T COG2319 138 LWDLSTPGKLIRTLEGHSESVTSLAFSPD--GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIA 215 (466)
T ss_pred EEEecCCCeEEEEEecCcccEEEEEECCC--CCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEE
Confidence 999 44 6888899999999999999874 457888875 99999999998778888888889999999999998 444
Q ss_pred EeecCCCCCceEEEEeCCCCeeEE-EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee-eEeeccCCCCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKR-TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNL 632 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v 632 (1101)
+++ .++.|.+||...+.... .+.+|.. .. ...|++++..+++++.|+.+++|+...... ...+ ..+...+
T Consensus 216 ~~~----~d~~i~~wd~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~--~~~~~~v 287 (466)
T COG2319 216 SGS----SDGTIRLWDLSTGKLLRSTLSGHSD-SV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTL--SGHSSSV 287 (466)
T ss_pred Eec----CCCcEEEEECCCCcEEeeecCCCCc-ce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEE--ecCCccE
Confidence 434 38889999998888888 6777776 33 338999998889999999999999987664 4444 2335578
Q ss_pred CeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCC
Q 001319 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 712 (1101)
.++.|+|++..+++++.|+.+.+|+..+..... ...
T Consensus 288 ~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~------------------------------------------- 323 (466)
T COG2319 288 LSVAFSPDGKLLASGSSDGTVRLWDLETGKLLS-SLT------------------------------------------- 323 (466)
T ss_pred EEEEECCCCCEEEEeeCCCcEEEEEcCCCceEE-Eee-------------------------------------------
Confidence 999999988888888888889999765441100 000
Q ss_pred ceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcc
Q 001319 713 PIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 792 (1101)
Q Consensus 713 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1101)
. .
T Consensus 324 -----------------~---~---------------------------------------------------------- 325 (466)
T COG2319 324 -----------------L---K---------------------------------------------------------- 325 (466)
T ss_pred -----------------e---c----------------------------------------------------------
Confidence 0 0
Q ss_pred ceeeccCCCCCCCCEeEEEecCCCCeEEEE-c-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEE-EeCCCc
Q 001319 793 LMANDVAGVNLEEAVPCIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI-GTEDST 869 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~-g~~dg~ 869 (1101)
.|...+..+.+.+++..++.+ . ++.+.+|+............. ..+..+.+++ + ..++. +..++.
T Consensus 326 ---------~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~-~~~~~~~~~~~~ 393 (466)
T COG2319 326 ---------GHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEGH-SNVLSVSFSP-D-GRVVSSGSTDGT 393 (466)
T ss_pred ---------ccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCceeEEecCC-ceEEEEEECC-C-CCEEEEecCCCc
Confidence 133345556663232444444 3 677888888776632222222 2288899998 7 55554 789999
Q ss_pred EEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 870 IHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 870 v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
+.+|+............+...+....+++++..+++++.++.+++|+..+
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 394 VRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred eEEEecccCeeeeeccCCCCcEEEEEECCCCcEEEEecCCCcEEEEeccC
Confidence 99999999888777765557899999999999999999999999999988
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.5e-19 Score=176.02 Aligned_cols=290 Identities=16% Similarity=0.249 Sum_probs=211.9
Q ss_pred cCCCcEEEEEEec----CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 342 HQGSTVISMDFHP----SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 342 ~h~~~V~~v~fsp----dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
.|+.+|..++|.+ +...++|+.+. +.+.||++.....+. .++...-..|.....-++|+-|
T Consensus 36 d~~~~I~gv~fN~~~~~~e~~vfatvG~-~rvtiy~c~~d~~ir--------------~lq~y~D~d~~Esfytcsw~yd 100 (385)
T KOG1034|consen 36 DHNKPIFGVAFNSFLGCDEPQVFATVGG-NRVTIYECPGDGGIR--------------LLQSYADEDHDESFYTCSWSYD 100 (385)
T ss_pred cCCCccceeeeehhcCCCCCceEEEeCC-cEEEEEEECCcccee--------------eeeeccCCCCCcceEEEEEEec
Confidence 3788999999985 22336676644 588899986543221 1121122347788888999875
Q ss_pred C----CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe--
Q 001319 418 G----NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1101)
Q Consensus 418 g----~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-- 490 (1101)
- -++|+|+.-|.|+|.|+.++++.. .+.+|.+.|+.+.|.|+..+ +++++|.|.+|++|+ .+..++..|
T Consensus 101 ~~~~~p~la~~G~~GvIrVid~~~~~~~~---~~~ghG~sINeik~~p~~~q-lvls~SkD~svRlwnI~~~~Cv~VfGG 176 (385)
T KOG1034|consen 101 SNTGNPFLAAGGYLGVIRVIDVVSGQCSK---NYRGHGGSINEIKFHPDRPQ-LVLSASKDHSVRLWNIQTDVCVAVFGG 176 (385)
T ss_pred CCCCCeeEEeecceeEEEEEecchhhhcc---ceeccCccchhhhcCCCCCc-EEEEecCCceEEEEeccCCeEEEEecc
Confidence 3 489999999999999999998877 68899999999999999877 899999999999999 899998877
Q ss_pred -ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----------------------------eccCCCCce
Q 001319 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------------------------DYDAPGHWC 541 (1101)
Q Consensus 491 -~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------------------------~~~~~~~~v 541 (1101)
.||.+.|.++.|+. +|.++++++.|.+|++|++...+-.. +...|...|
T Consensus 177 ~egHrdeVLSvD~~~--~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 177 VEGHRDEVLSVDFSL--DGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccCcEEEEEEcC--CCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 56999999999987 56799999999999999997432111 011122233
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeC-CCCee-------------EEEecccCCcceEEE--EEeCCCCEEEEEeC
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNE-SEGTI-------------KRTYAGFRKKSNGVV--QFDTTQNHFLAVGE 605 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~-~~~~~-------------~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~ 605 (1101)
.|+.|- |.++++-+. ++.|..|.. +-++. ...+.-... .+..+ +|.|-++.|+.|..
T Consensus 255 DCvrw~--gd~ilSksc----enaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c-~iWfirf~~d~~~~~la~gnq 327 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSC----ENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMC-DIWFIRFAFDPWQKMLALGNQ 327 (385)
T ss_pred HHHHHH--hhheeeccc----CceEEEEecchhhhhhhccCCCccceeeeeEeccCcc-ceEEEEEeecHHHHHHhhccC
Confidence 333332 467777654 778999987 22221 222222222 34444 55666789999999
Q ss_pred CCcEEEEECCCCeee--EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 606 DSQIKFWDMDNVNIL--TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 606 dg~i~iwd~~~~~~~--~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
.|.|++||++..+.. .++........|...+|+.||..|+..++|++|.-||..
T Consensus 328 ~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 328 SGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred CCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 999999999886652 233333344578999999999999999999999999853
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.9e-20 Score=186.42 Aligned_cols=216 Identities=15% Similarity=0.273 Sum_probs=174.1
Q ss_pred EEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 809 CIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
|++......++++|+ .+.|+|||++...+.+.++.|...|+++.+.- ...+||+++..|.|.|..+.++.....|.-.
T Consensus 84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~-~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~ 162 (673)
T KOG4378|consen 84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNN-TDEYIASVSDGGDIIIHGTKTKQKTTTFTID 162 (673)
T ss_pred HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecC-CcceeEEeccCCcEEEEecccCccccceecC
Confidence 333333447788887 88999999998888888999999999999998 7789999999999999999999877777644
Q ss_pred C-CCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE--EeCCeEEEEE
Q 001319 888 Q-KRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYD 963 (1101)
Q Consensus 888 ~-~~V~~l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d 963 (1101)
. ..|.-+.|++..+ +|.+++.+|.|.+||+...... ++....|. .+...++|+|....|++ |-|.+|.+||
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~----~~~~~~Hs-AP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPI----FHASEAHS-APCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcc----cchhhhcc-CCcCcceecCCccceEEEecccceEEEee
Confidence 3 4466899999876 5667899999999999885432 22223333 78889999998887776 6799999999
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEe
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAH 1043 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~ 1043 (1101)
+...+....+.. ..+.+.|+|+++|.+|+.|+..|.|..||++..+...... |.|...|++++|-
T Consensus 238 ~~s~~s~~~l~y----~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~-----------sah~~sVt~vafq 302 (673)
T KOG4378|consen 238 IRSQASTDRLTY----SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVR-----------SAHDASVTRVAFQ 302 (673)
T ss_pred cccccccceeee----cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEe-----------eecccceeEEEee
Confidence 998888777766 7889999999999999999999999999998765433333 4555567899998
Q ss_pred cC
Q 001319 1044 PL 1045 (1101)
Q Consensus 1044 p~ 1045 (1101)
|.
T Consensus 303 ~s 304 (673)
T KOG4378|consen 303 PS 304 (673)
T ss_pred ec
Confidence 83
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=8.3e-20 Score=185.15 Aligned_cols=240 Identities=14% Similarity=0.138 Sum_probs=186.8
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccce------------------eeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHS------------------QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~------------------~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
|+|+|.|+.|..|.|||+.--..+.+.. .-.+|++.|.+++|+..-++ +|+|||.|.+|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~n-VLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRN-VLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccce-eEEecCCCceEEE
Confidence 6899999999999999986332222111 12379999999999998877 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
|| .+|++..++..|.+.|.++.|++.. ..+|++|+.|++|.+.|.+.....-..-.-.+.|..++|.|.....+.++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~-p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~t 349 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYE-PSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVST 349 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCC-ceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEec
Confidence 99 9999999999999999999999874 589999999999999999843222111112345889999998877776665
Q ss_pred CCCCCceEEEEeCCCC-eeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 559 SKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
.+|+|+-+|++.. +++.++..|.+ .|.++++++.- ..+++++.|+.|.+|++............-..+...|.+
T Consensus 350 ---ddG~v~~~D~R~~~~~vwt~~AHd~-~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~ 425 (463)
T KOG0270|consen 350 ---DDGTVYYFDIRNPGKPVWTLKAHDD-EISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFA 425 (463)
T ss_pred ---CCceEEeeecCCCCCceeEEEeccC-CcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecc
Confidence 4899999999874 89999999988 89999998854 467779999999999987644432222222223456777
Q ss_pred EecCC-CEEEEEEcCCcEEEEEcccccc
Q 001319 637 FSKEG-NLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 637 ~s~~g-~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
+.|+- -.++.|+..+.+++||+.+...
T Consensus 426 ~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 426 LDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cCCCcceEEEecCccceEEEeecccChh
Confidence 77754 4677778888899999987633
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.6e-19 Score=173.28 Aligned_cols=298 Identities=12% Similarity=0.196 Sum_probs=207.0
Q ss_pred CCCcccEEEEEeec----CcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE
Q 001319 734 TDTSSKVVRLLYTN----SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 809 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~----~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 809 (1101)
..|..+|.+++|.+ +...+++......+.+|+...... + ..+..... ..+.+....
T Consensus 35 ed~~~~I~gv~fN~~~~~~e~~vfatvG~~rvtiy~c~~d~~-----------i--------r~lq~y~D-~d~~Esfyt 94 (385)
T KOG1034|consen 35 EDHNKPIFGVAFNSFLGCDEPQVFATVGGNRVTIYECPGDGG-----------I--------RLLQSYAD-EDHDESFYT 94 (385)
T ss_pred ccCCCccceeeeehhcCCCCCceEEEeCCcEEEEEEECCccc-----------e--------eeeeeccC-CCCCcceEE
Confidence 34778888898873 334455555566888887653210 0 01111111 136666677
Q ss_pred EEecCC----CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 810 IALSKN----DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 810 ~~~s~d----g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
++|+-| ..++|+++ -|.|+|.|+.++++...+.+|...|..+.|.|...+++++++.|.+|++|++.+..++..|
T Consensus 95 csw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~Vf 174 (385)
T KOG1034|consen 95 CSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVF 174 (385)
T ss_pred EEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEe
Confidence 777654 33666666 7999999999999999999999999999999977789999999999999999999999887
Q ss_pred ---ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe-------------ecCCC---------CCCCc
Q 001319 885 ---KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-------------IPAGK---------TPTGD 939 (1101)
Q Consensus 885 ---~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-------------~~~~~---------~~~~v 939 (1101)
.||.+.|.++.|+++|.+++|+|.|.++++|++...+........ ....+ +...|
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyV 254 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYV 254 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchH
Confidence 579999999999999999999999999999999853322111110 00000 00222
Q ss_pred ceEEEcCCCCEEEE-EeCCeEEEEEcC-Ccee-------------eeEeccCCCCCCCEEEEEEc--cCCCEEEEEeCCC
Q 001319 940 TRVQFNADQVRMLV-VHETQLAIYDAS-KMER-------------IRQWTPQDALSAPISCAVYS--CNSQLVFATFCDG 1002 (1101)
Q Consensus 940 ~~~~~s~d~~~l~~-~~d~~i~v~d~~-~~~~-------------~~~~~~~~~h~~~v~~v~~s--~dg~~l~s~~~dg 1002 (1101)
.++.|- |.++++ +.++.|..|... -.+. +..+... ...|.-+.|+ +-+++||.|...|
T Consensus 255 DCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~---~c~iWfirf~~d~~~~~la~gnq~g 329 (385)
T KOG1034|consen 255 DCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYP---MCDIWFIRFAFDPWQKMLALGNQSG 329 (385)
T ss_pred HHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccC---ccceEEEEEeecHHHHHHhhccCCC
Confidence 222222 456666 568899999872 1222 2222222 5566666655 5578999999999
Q ss_pred cEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1003 NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1003 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.|++||++..+....-... .+.....+-..+|+. |+.+|+...+|++|.-||.-
T Consensus 330 ~v~vwdL~~~ep~~~ttl~--------~s~~~~tVRQ~sfS~-dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 330 KVYVWDLDNNEPPKCTTLT--------HSKSGSTVRQTSFSR-DGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cEEEEECCCCCCccCceEE--------eccccceeeeeeecc-cCcEEEEEeCCCcEEEEEee
Confidence 9999999987653111100 022223345778888 79999999999999999853
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.4e-16 Score=185.40 Aligned_cols=290 Identities=26% Similarity=0.428 Sum_probs=220.4
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCc-eeccccceeecccccCccccccccccCC-ccEEEEEE-c
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAW-S 415 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~-s 415 (1101)
....|...|.++.|.+.+.. ++.++.|+.+.+|+...+. ... .+.++. ..+..+.+ +
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~ 119 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGEL-LLSGSSDGTIKLWDLDNGEKLIK-------------------SLEGLHDSSVSKLALSS 119 (466)
T ss_pred eeeeccceEEEEEECCCCcE-EEEecCCCcEEEEEcCCCceeEE-------------------EEeccCCCceeeEEEEC
Confidence 34468999999999999984 5777789999999998875 222 133322 47777777 8
Q ss_pred cCCC-EEEEEEC-CCeEEEEeecC-CcccccceeeecccCcEEEEEEecCCCceEEEEecC-CceEEEEE-cCCceeEEe
Q 001319 416 PDGN-YVGVAFT-KHLIQLYSYAG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWE-LSGRKLFNF 490 (1101)
Q Consensus 416 pdg~-~las~~~-d~~i~vwd~~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~-d~~v~iwd-~~~~~~~~~ 490 (1101)
+++. +++..+. |+.+.+||... ..... .+..|...|..++|+|++. .+++++. |+.+++|+ ..+..+..+
T Consensus 120 ~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (466)
T COG2319 120 PDGNSILLASSSLDGTVKLWDLSTPGKLIR---TLEGHSESVTSLAFSPDGK--LLASGSSLDGTIKLWDLRTGKPLSTL 194 (466)
T ss_pred CCcceEEeccCCCCccEEEEEecCCCeEEE---EEecCcccEEEEEECCCCC--EEEecCCCCCceEEEEcCCCceEEee
Confidence 8888 5555444 99999999997 44333 6779999999999999999 6788875 99999999 667889999
Q ss_pred ecCCcCeEEEecccCCCcc-EEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 491 EGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
.+|...|.+++|++ ++. .+++++.|+.|++||...+.... .+..+.... ...|++++.++++++. ++.+++
T Consensus 195 ~~~~~~v~~~~~~~--~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----d~~~~~ 267 (466)
T COG2319 195 AGHTDPVSSLAFSP--DGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSS----DGTIRL 267 (466)
T ss_pred ccCCCceEEEEEcC--CcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecC----CCcEEE
Confidence 99999999999985 555 55555999999999888666666 566666654 4489999988887764 899999
Q ss_pred EeCCCCee-EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE
Q 001319 569 WNESEGTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 569 wd~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~ 647 (1101)
|+...... ...+.+|. ..+..+.|.|++..+++++.|+.+.+|+..+...........+...+..+.|.+++..++.+
T Consensus 268 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (466)
T COG2319 268 WDLRSSSSLLRTLSGHS-SSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSG 346 (466)
T ss_pred eeecCCCcEEEEEecCC-ccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEe
Confidence 99987664 44444553 47888999998889998888899999999887766665511222257788883332455555
Q ss_pred -EcCCcEEEEEcccc
Q 001319 648 -TADNGFKILANAIG 661 (1101)
Q Consensus 648 -~~d~~i~iwd~~~~ 661 (1101)
..|+.+.+|+....
T Consensus 347 ~~~d~~~~~~~~~~~ 361 (466)
T COG2319 347 GSDDGTIRLWDLRTG 361 (466)
T ss_pred ecCCCcEEeeecCCC
Confidence 56777877776544
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.5e-19 Score=171.61 Aligned_cols=409 Identities=13% Similarity=0.139 Sum_probs=252.8
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
-++|||+|+|+|+++.- .+.|-|.++-+..+.+ ---+.|..+.|..|.-+ .|.....|+.|.+|+ ...+-...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~~qlf----~cldki~yieW~ads~~-ilC~~yk~~~vqvwsl~Qpew~ck 86 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQLHQLF----LCLDKIVYIEWKADSCH-ILCVAYKDPKVQVWSLVQPEWYCK 86 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhHHHHH----HHHHHhhheeeecccee-eeeeeeccceEEEEEeecceeEEE
Confidence 46899999999999776 6888888886654422 22456888999998876 677888999999999 66666777
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
+......+.+++|+|++ ..+|.+...|-.|.+|.+.+...... ......+..++|.|||++.+.+++ .|-...+.+.
T Consensus 87 Ideg~agls~~~WSPdg-rhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sR-rDCkdyv~i~ 163 (447)
T KOG4497|consen 87 IDEGQAGLSSISWSPDG-RHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSR-RDCKDYVQIS 163 (447)
T ss_pred eccCCCcceeeeECCCc-ceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeec-ccHHHHHHHH
Confidence 88788899999998843 25677788899999999987665443 334455789999999999999875 1222223333
Q ss_pred eCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
.-....+.+.+..... ..+.+.|+|||+.+++ ||---.-.+..+... -.+..++|+|.+++|++|+.
T Consensus 164 ~c~~W~ll~~f~~dT~-DltgieWsPdg~~laV---------wd~~Leykv~aYe~~---lG~k~v~wsP~~qflavGsy 230 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTI-DLTGIEWSPDGNWLAV---------WDNVLEYKVYAYERG---LGLKFVEWSPCNQFLAVGSY 230 (447)
T ss_pred hhHHHHHHHhcCCCcc-cccCceECCCCcEEEE---------ecchhhheeeeeeec---cceeEEEeccccceEEeecc
Confidence 2233344455554444 4566899999988765 443222122222211 14688999999999999999
Q ss_pred CCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEE
Q 001319 650 DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVT 729 (1101)
Q Consensus 650 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 729 (1101)
|+.+|+.+--+= ++-++.+-...-.+.+. . +.. ......+
T Consensus 231 D~~lrvlnh~tW------------------------k~f~eflhl~s~~dp~~-----------~-~~~---ke~~~~~- 270 (447)
T KOG4497|consen 231 DQMLRVLNHFTW------------------------KPFGEFLHLCSYHDPTL-----------H-LLE---KETFSIV- 270 (447)
T ss_pred chhhhhhceeee------------------------eehhhhccchhccCchh-----------h-hhh---hhhcchh-
Confidence 999998653221 11111110000000000 0 000 0000000
Q ss_pred cCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeE
Q 001319 730 MPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPC 809 (1101)
Q Consensus 730 ~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 809 (1101)
.-...++.|.|..- ...+|............. .......+. .+.+ +....+.-
T Consensus 271 -------ql~~~cLsf~p~~~---------~a~~~~~se~~YE~~~~p---v~~~~lkp~------tD~p--nPk~g~g~ 323 (447)
T KOG4497|consen 271 -------QLLHHCLSFTPTDL---------EAHIWEESETIYEQQMTP---VKVHKLKPP------TDFP--NPKCGAGK 323 (447)
T ss_pred -------hhcccccccCCCcc---------ccCccccchhhhhhhhcc---eeeecccCC------CCCC--Ccccccce
Confidence 00001222222110 011111000000000000 000000000 0111 24556778
Q ss_pred EEecCCCCeEEEEcC---CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc
Q 001319 810 IALSKNDSYVMSATG---GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 810 ~~~s~dg~~la~~~d---g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
++||+|..++++..| +.+.+||++..+....+. ...+|.+..|.| +...|+.+.....+++|.......+..- +
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLi-Qk~piraf~WdP-~~prL~vctg~srLY~W~psg~~~V~vP-~ 400 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLI-QKHPIRAFEWDP-GRPRLVVCTGKSRLYFWAPSGPRVVGVP-K 400 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhhhhh-hccceeEEEeCC-CCceEEEEcCCceEEEEcCCCceEEecC-C
Confidence 999999999999875 569999998877655544 467899999999 7777777777778999988765555433 3
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCc
Q 001319 887 HQKRITGLAFSTSLNILVSSGADAQ 911 (1101)
Q Consensus 887 h~~~V~~l~~s~d~~~l~s~s~Dg~ 911 (1101)
..-.|..+.|.-+|..++-.+.|..
T Consensus 401 ~GF~i~~l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 401 KGFNIQKLQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceeeeEEecCCCcEEEEEcCCce
Confidence 3467999999999999999998864
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.6e-19 Score=169.78 Aligned_cols=287 Identities=15% Similarity=0.215 Sum_probs=210.3
Q ss_pred EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc-------cCCC
Q 001319 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-------PDGN 419 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s-------pdg~ 419 (1101)
...+.|||||..+| +-+.|..+.+|++...-.-....... ..+.....-......|...+|- |+..
T Consensus 52 ~kgckWSPDGSciL-~~sedn~l~~~nlP~dlys~~~~~~~------~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~ 124 (406)
T KOG2919|consen 52 LKGCKWSPDGSCIL-SLSEDNCLNCWNLPFDLYSKKADGPL------NFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTN 124 (406)
T ss_pred hccceeCCCCceEE-eecccCeeeEEecChhhcccCCCCcc------ccccceeEEeccCCEEEEEEeeeccccCCCccc
Confidence 45688999999765 56799999999985321111000000 0000001111234567777775 6788
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccC---cEEEEEEecCCCceEEEEecCCceEEEEE--cCCce--eEEee-
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRK--LFNFE- 491 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~---~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~--~~~~~- 491 (1101)
++|+.+.+.-|++||.-+|+.......+ .|.+ .-.+++|+|||. .|++ +..+.|+++| ..|+- +....
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~y-dh~de~taAhsL~Fs~DGe--qlfa-GykrcirvFdt~RpGr~c~vy~t~~ 200 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAY-DHQDEYTAAHSLQFSPDGE--QLFA-GYKRCIRVFDTSRPGRDCPVYTTVT 200 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhh-hhHHhhhhheeEEecCCCC--eEee-cccceEEEeeccCCCCCCcchhhhh
Confidence 9999999999999999999865533222 3444 346899999999 4665 4588999999 55543 22222
Q ss_pred ----cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 492 ----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 492 ----~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
+..+-|.+++|+|.. ...++.++...++-++.-........+.+|++.|+.++|.++|+.|++|+. .+..|.
T Consensus 201 ~~k~gq~giisc~a~sP~~-~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaR---k~dkIl 276 (406)
T KOG2919|consen 201 KGKFGQKGIISCFAFSPMD-SKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGAR---KDDKIL 276 (406)
T ss_pred cccccccceeeeeeccCCC-CcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeeccccc---CCCeEE
Confidence 336678999999874 468999999999999988889999999999999999999999999999986 577899
Q ss_pred EEeCCC-CeeEEEecccCCcceEEE--EEeCCCCEEEEEeCCCcEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 568 EWNESE-GTIKRTYAGFRKKSNGVV--QFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 568 iwd~~~-~~~~~~~~~~~~~~v~~~--~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
.||++. +.++..+..|....-..+ ...|++++|++|+.||.|++||+.+ +..+..+..+.. .++.++++|--.+
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd--~vNgvslnP~mpi 354 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD--TVNGVSLNPIMPI 354 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc--cccceecCcccce
Confidence 999985 556667777655333334 4568899999999999999999998 666666665544 7899999999888
Q ss_pred EEEEEcC
Q 001319 644 LAVTTAD 650 (1101)
Q Consensus 644 l~~~~~d 650 (1101)
+++++..
T Consensus 355 latssGq 361 (406)
T KOG2919|consen 355 LATSSGQ 361 (406)
T ss_pred eeeccCc
Confidence 8877754
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.82 E-value=8.4e-19 Score=173.85 Aligned_cols=263 Identities=17% Similarity=0.209 Sum_probs=186.8
Q ss_pred CCcceeEeecCCCcEEEEEEecCCc-eEEEEEeccCcEEEEecCCCce-eccccceeecccccCccccccccccCCccEE
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDR-LVSKPFKIWDMAACSLPFQASIFKDVPISVS 410 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~-~llasg~~d~~i~iwd~~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~ 410 (1101)
.|..-...++|.+.|.-+.-++-|+ .++|+=+..|.|.||++...-. +....+..-+ +...+..++.+|.+.=+
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~----s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKD----SEFRPLFTFNGHKGEGY 215 (440)
T ss_pred cccccccccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccc----cccCceEEecccCccce
Confidence 3444556677888898888888753 4566668899999999854211 1111111111 11123346889999999
Q ss_pred EEEEccC-CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC---c
Q 001319 411 RVAWSPD-GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---R 485 (1101)
Q Consensus 411 ~~~~spd-g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~---~ 485 (1101)
.++|||- -..|++|..-+.|++|...+|.-..-...+.+|+..|..++|||..+. +|+|||.||+|+||| ..+ .
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~-vfaScS~DgsIrIWDiRs~~~~~ 294 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDG-VFASCSCDGSIRIWDIRSGPKKA 294 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCc-eEEeeecCceEEEEEecCCCccc
Confidence 9999992 234778888888999999987644333357789999999999998777 899999999999999 665 3
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC---CeeeeccCCCCceEEEEEccCCCE-EEEeecCCC
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKD 561 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~~~ 561 (1101)
++.+ +.|.+.|+.|.|+... .+|++|+.||+++|||++.. ..+..+..|..+|+++.|+|.... +++++
T Consensus 295 ~~~~-kAh~sDVNVISWnr~~--~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg---- 367 (440)
T KOG0302|consen 295 AVST-KAHNSDVNVISWNRRE--PLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASG---- 367 (440)
T ss_pred eeEe-eccCCceeeEEccCCc--ceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEecc----
Confidence 3433 8899999999998654 48999999999999999764 455688889999999999996554 44444
Q ss_pred CCceEEEEeCCCCee----------------EEEeccc-CCcceEEEEEeCCC-CEEEEEeCCC
Q 001319 562 GDSFLVEWNESEGTI----------------KRTYAGF-RKKSNGVVQFDTTQ-NHFLAVGEDS 607 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~----------------~~~~~~~-~~~~v~~~~~~~~~-~~l~~~~~dg 607 (1101)
.|.+|.+||+..-.- .+.+--| .+..+.-+.|++.- .++++.+.||
T Consensus 368 ~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG 431 (440)
T KOG0302|consen 368 EDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG 431 (440)
T ss_pred CCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc
Confidence 388999999863211 0111112 12235557777753 4566666666
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.1e-18 Score=168.56 Aligned_cols=300 Identities=17% Similarity=0.232 Sum_probs=217.7
Q ss_pred cccEEEEEeecCcc-cEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 737 SSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~-~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
..++.++.|.+++. .+++++.|..|++|.+........+... .....+. .|...|.++.|+|+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V--------------~y~s~Ls--~H~~aVN~vRf~p~ 76 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKV--------------EYLSSLS--RHTRAVNVVRFSPD 76 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeE--------------EEeeccc--CCcceeEEEEEcCC
Confidence 45677888887776 8999999999999998765432211000 1111122 49999999999999
Q ss_pred CCeEEEEc-CCeEEEEECC--------C--------ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 816 DSYVMSAT-GGKISLFNMM--------T--------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~--------~--------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
|.++|+|+ +|+|.+|-.. + +.....+.+|...|..++|+| ++.++++++-|+.+++||+..|
T Consensus 77 gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~-d~~~l~s~s~dns~~l~Dv~~G 155 (434)
T KOG1009|consen 77 GELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSP-DSNFLVSGSVDNSVRLWDVHAG 155 (434)
T ss_pred cCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccC-CCceeeeeeccceEEEEEeccc
Confidence 99999998 6889999654 2 445667888999999999999 9999999999999999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE---Eeec--------------CCCCCCCcce
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT---IHIP--------------AGKTPTGDTR 941 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~---~~~~--------------~~~~~~~v~~ 941 (1101)
+.+..+.+|..-|..++|.|-++++++-+.|...+.+.+.......... +... .+.-..-...
T Consensus 156 ~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrR 235 (434)
T KOG1009|consen 156 QLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRR 235 (434)
T ss_pred eeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhh
Confidence 9999999999999999999999999999999877777766543322211 0000 0001144668
Q ss_pred EEEcCCCCEEEEEe-----CCe-----EEEEEcCCce-eeeEeccCCCCCCCEEEEEEcc--------C---------CC
Q 001319 942 VQFNADQVRMLVVH-----ETQ-----LAIYDASKME-RIRQWTPQDALSAPISCAVYSC--------N---------SQ 993 (1101)
Q Consensus 942 ~~~s~d~~~l~~~~-----d~~-----i~v~d~~~~~-~~~~~~~~~~h~~~v~~v~~s~--------d---------g~ 993 (1101)
++|+|||.++++.. .+. .++|+-...+ .+..+... ..++..+.|+| + -+
T Consensus 236 lsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~---~k~~lavr~~pVy~elrp~~~~~~~~~lpyr 312 (434)
T KOG1009|consen 236 LSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSP---KKPALAVRFSPVYYELRPLSSEKFLFVLPYR 312 (434)
T ss_pred cccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCC---CcceEEEEeeeeEEEeccccccccccccccc
Confidence 89999999999821 232 3555554332 23333333 66777777765 1 12
Q ss_pred EEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 994 LVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 994 ~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+++.-.....|+|||.++...++....- |-..++.++|++ |+..|+..+.||-..+-.++..|
T Consensus 313 lvfaiAt~~svyvydtq~~~P~~~v~ni-----------hy~~iTDiaws~-dg~~l~vSS~DGyCS~vtfe~~e 375 (434)
T KOG1009|consen 313 LVFAIATKNSVYVYDTQTLEPLAVVDNI-----------HYSAITDIAWSD-DGSVLLVSSTDGFCSLVTFEPWE 375 (434)
T ss_pred eEEEEeecceEEEeccccccceEEEeee-----------eeeeecceeecC-CCcEEEEeccCCceEEEEEcchh
Confidence 3333344668999999999888887643 233457899999 79999999999977665554444
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.7e-18 Score=172.57 Aligned_cols=253 Identities=15% Similarity=0.226 Sum_probs=191.4
Q ss_pred cEEEEEEcc-----CCCEEEEE---ECCCeEEEEee-cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 408 SVSRVAWSP-----DGNYVGVA---FTKHLIQLYSY-AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 408 ~v~~~~~sp-----dg~~las~---~~d~~i~vwd~-~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
.|+..+|.. +.++||+. +..|...|--+ ++|+.-.....+.||+++|..++|+|-+.+ .++|||+|.+|.
T Consensus 29 rVs~~tWDS~fcavNPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~-vIASgSeD~~v~ 107 (472)
T KOG0303|consen 29 RVSRVTWDSSFCAVNPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDC-VIASGSEDTKVM 107 (472)
T ss_pred eeeeeeccccccccCCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCc-eeecCCCCceEE
Confidence 344455433 45666653 22233333333 345544444567799999999999998776 899999999999
Q ss_pred EEE-cCC-------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCC
Q 001319 479 VWE-LSG-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1101)
Q Consensus 479 iwd-~~~-------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~ 550 (1101)
||. ..+ +++..+.||+..|.-|+|+|... +.|++++.|.+|.+|++.+++....+. |...|.++.|+.||
T Consensus 108 vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~-NVLlsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG 185 (472)
T KOG0303|consen 108 VWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAP-NVLLSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG 185 (472)
T ss_pred EEECCCcccccCcccceEEEeecceeEEEEeecccch-hhHhhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC
Confidence 999 333 34678899999999999999865 689999999999999999999999988 88899999999999
Q ss_pred CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCeeeEeeccC
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
.++++.+. |..|++||.++++.+..-.+|.+.....+.|-.+|. +++.| .+..+-+||..+.+....+..-
T Consensus 186 s~l~Ttck----DKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~~el 260 (472)
T KOG0303|consen 186 SLLCTTCK----DKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIALQEL 260 (472)
T ss_pred ceeeeecc----cceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCcceeEEe
Confidence 99999986 889999999999999998888887777788888888 55544 6789999997764332222111
Q ss_pred CCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEccccccccccc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~ 668 (1101)
.....|.---|.+|...++.++ .|+.|+.|.+.+....+..+
T Consensus 261 DtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyl 303 (472)
T KOG0303|consen 261 DTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYL 303 (472)
T ss_pred ccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEe
Confidence 1222455555778888777655 59999999998774444433
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.82 E-value=5.6e-19 Score=179.22 Aligned_cols=253 Identities=12% Similarity=0.140 Sum_probs=183.5
Q ss_pred CceEEEEEeccCcEEEEecCCCceeccccceeecccccCc----cccccccccCCccEEEEEEccC-CCEEEEEECCCeE
Q 001319 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL----PFQASIFKDVPISVSRVAWSPD-GNYVGVAFTKHLI 430 (1101)
Q Consensus 356 g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~----~~~~~~~~~h~~~v~~~~~spd-g~~las~~~d~~i 430 (1101)
|+ ++|.|+.|..|.|||++-...+.. .+.+ ....+.. ........+|+..|.+++|..+ ...||+||.|.+|
T Consensus 192 gN-yvAiGtmdp~IeIWDLDI~d~v~P-~~~L-Gs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV 268 (463)
T KOG0270|consen 192 GN-YVAIGTMDPEIEIWDLDIVDAVLP-CVTL-GSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTV 268 (463)
T ss_pred cc-eEEEeccCceeEEecccccccccc-ceee-chhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceE
Confidence 55 579999999999999976544320 0100 0000000 0011224589999999999985 4578999999999
Q ss_pred EEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCcc
Q 001319 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQ 509 (1101)
Q Consensus 431 ~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~ 509 (1101)
++||+.+|++.. .+..|.+.|.+++|.|.... +|++|+.|++|.+.| .........-...+.|-.++|.+... .
T Consensus 269 ~lWD~~~g~p~~---s~~~~~k~Vq~l~wh~~~p~-~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se-~ 343 (463)
T KOG0270|consen 269 KLWDVDTGKPKS---SITHHGKKVQTLEWHPYEPS-VLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSE-N 343 (463)
T ss_pred EEEEcCCCCcce---ehhhcCCceeEEEecCCCce-EEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCc-e
Confidence 999999999877 67789999999999998776 899999999999999 53322222222566799999987654 5
Q ss_pred EEEEeccCCeEEEEecCCC-CeeeeccCCCCceEEEEEccCCCEE-EEeecCCCCCceEEEEeCCCCeeEEEeccc-CCc
Q 001319 510 FIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKK 586 (1101)
Q Consensus 510 ~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l-~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~ 586 (1101)
.++++..||+|+-+|++.. ++.+.+..|...|.++++++.-..+ ++++ .++.|.+|++..-......... .-.
T Consensus 344 ~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s----~d~~Vklw~~~~~~~~~v~~~~~~~~ 419 (463)
T KOG0270|consen 344 SFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTAS----TDKVVKLWKFDVDSPKSVKEHSFKLG 419 (463)
T ss_pred eEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecc----ccceEEEEeecCCCCccccccccccc
Confidence 7788899999999999987 7788999999999999999876654 4554 4899999998754332111100 011
Q ss_pred ceEEEEEeCCCCE-EEEEeCCCcEEEEECCCCeee
Q 001319 587 SNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 587 ~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
...|.++.|+-.+ ++.||..+.++|||+.+...+
T Consensus 420 rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 420 RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 3556677776554 555788889999999876544
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-17 Score=177.08 Aligned_cols=496 Identities=15% Similarity=0.186 Sum_probs=304.2
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCC----------CceEEEEecCCc
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN----------KLLCVVTCGDDK 475 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~----------~~~~l~s~~~d~ 475 (1101)
...-.++.|+|.| +||.|+.. .|.|-|..+-+.+. .+..|...|+.+.|.|-. ..++++++...|
T Consensus 15 ~sN~~A~Dw~~~G-LiAygshs-lV~VVDs~s~q~iq---sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~G 89 (1062)
T KOG1912|consen 15 RSNRNAADWSPSG-LIAYGSHS-LVSVVDSRSLQLIQ---SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISG 89 (1062)
T ss_pred cccccccccCccc-eEEEecCc-eEEEEehhhhhhhh---ccccCccceeEEEeccCCCchhccCccccceeEEeccccC
Confidence 4447788999866 67777654 68999988877666 678899999999998732 345789999999
Q ss_pred eEEEEE-cCCceeEEeecCCcCeEEEecccCCCc--cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc-CCC
Q 001319 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENI--QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGS 551 (1101)
Q Consensus 476 ~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~--~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~ 551 (1101)
.|.+|| ..+..+..+..|..++..++|.+..+. .+|++.....++.+|+.++++..+..........|+.+.| |.+
T Consensus 90 rIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~r 169 (1062)
T KOG1912|consen 90 RIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSR 169 (1062)
T ss_pred cEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcc
Confidence 999999 888888999999999999999875443 4677778889999999999999999888888888899988 445
Q ss_pred EEEEeecCCCCCceEEEEeCC-------CCeeEEEecccCC-----------cce-------------EEEEEeCCCCEE
Q 001319 552 RLFSCGTSKDGDSFLVEWNES-------EGTIKRTYAGFRK-----------KSN-------------GVVQFDTTQNHF 600 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~-------~~~~~~~~~~~~~-----------~~v-------------~~~~~~~~~~~l 600 (1101)
.+...+. .|.+.+-+.- .|+..+.-..|.+ ... ..++|+|.-+.+
T Consensus 170 h~~~l~s----~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~ 245 (1062)
T KOG1912|consen 170 HFCVLGS----KGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNI 245 (1062)
T ss_pred eEEEEcc----CceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhce
Confidence 5544433 4555544321 1222222211111 000 115678877777
Q ss_pred EEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC--CEEEEEEcCCcEEEEEccccccccccccCCCcccccC
Q 001319 601 LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG--NLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1101)
Q Consensus 601 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g--~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1101)
+.......+.++|++-...+.......+ .+.-+.+-|++ ..|++.-.||.+.+|--.......+....
T Consensus 246 lfi~~prellv~dle~~~~l~vvpier~--~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~~~~-------- 315 (1062)
T KOG1912|consen 246 LFITFPRELLVFDLEYECCLAVVPIERG--GAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKKPNA-------- 315 (1062)
T ss_pred EEEEeccceEEEcchhhceeEEEEeccC--CcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccccch--------
Confidence 7777788999999999988888877655 34556666654 57899999999999975433111111100
Q ss_pred cceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecC-cccEEEeec
Q 001319 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNS-AVGLLALGS 757 (1101)
Q Consensus 679 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~-~~~l~~~~~ 757 (1101)
.+ ......++..+...+ .-.+...+..|. ...+...-+
T Consensus 316 ---~l----------------------------------~~dl~~Q~~~vr~m~----~~rp~~~~~cPs~~sa~avl~s 354 (1062)
T KOG1912|consen 316 ---SL----------------------------------SMDLGEQVHVVRPME----EFRPVIGASCPSTPSALAVLYS 354 (1062)
T ss_pred ---hh----------------------------------ccccccceEEEeech----hcccceeecCCCChhhhhhhhh
Confidence 00 011112222222211 111122222333 333444556
Q ss_pred CCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCe--EEEEECCCc
Q 001319 758 NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK--ISLFNMMTF 835 (1101)
Q Consensus 758 dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~--i~vwd~~~~ 835 (1101)
+|.+.+|++..+............-..-++....... -..-.-+.+|.||.. +.|. +++--+...
T Consensus 355 ~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~---------v~k~~l~~LS~dg~h----~sGs~~~~~~p~p~~ 421 (1062)
T KOG1912|consen 355 SGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL---------VGKTSLISLSDDGSH----SSGSTCVRMRPMPEL 421 (1062)
T ss_pred cchhHHHhhhcCCcCcccccccccccccccccCceee---------hhhccccchhhcCCC----CCCceeeecccCccc
Confidence 6777788776433322221100000000000000000 000000111222200 0111 011000000
Q ss_pred eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEe--------
Q 001319 836 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG-------- 907 (1101)
Q Consensus 836 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s-------- 907 (1101)
...... . +.-+-...- .++|.|.+.|+|.++|+.++..-..+..|.+.|.++.|..... |++.+
T Consensus 422 t~~~~~--p-~~n~~~~~~----pLvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~s 493 (1062)
T KOG1912|consen 422 TKVEND--P-GGNTPAGTV----PLVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSAS 493 (1062)
T ss_pred ceeecC--C-CCCccceee----eeEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccc
Confidence 000000 0 111111111 4889999999999999999999999999999999999986643 44433
Q ss_pred --CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeeeEeccCCCCCCC-E
Q 001319 908 --ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAP-I 983 (1101)
Q Consensus 908 --~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~-v 983 (1101)
.-..+.+=|+.+|-.+.... ..+....+|+.+..|..+++|++. .+.-+.+||+.+..+++.... .-+ |
T Consensus 494 g~vrN~l~vtdLrtGlsk~fR~---l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~~~lr~mS~----a~P~i 566 (1062)
T KOG1912|consen 494 GGVRNDLVVTDLRTGLSKRFRG---LQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTLRMLRLMSL----ALPLI 566 (1062)
T ss_pred cceeeeEEEEEccccccccccc---CCCCCcCcceeeeecccCceEEEEecccchHHHhhccchHHHHHhh----cCCcE
Confidence 22457788999887544332 233333789999999999999994 689999999988877666544 445 8
Q ss_pred EEEEEc
Q 001319 984 SCAVYS 989 (1101)
Q Consensus 984 ~~v~~s 989 (1101)
+.+.|+
T Consensus 567 t~leWs 572 (1062)
T KOG1912|consen 567 TVLEWS 572 (1062)
T ss_pred EEEeec
Confidence 888888
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-18 Score=176.94 Aligned_cols=275 Identities=12% Similarity=0.144 Sum_probs=203.4
Q ss_pred CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecCCcc-cccc
Q 001319 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSND-LRQH 444 (1101)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~-~~~~ 444 (1101)
..++|||+...+.... +. -......+.++.|+.... .+|+.+.|..|++|.-..... +...
T Consensus 12 d~~kl~D~s~~~~~~~--------------~~---~~t~~pg~~s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~ 74 (673)
T KOG4378|consen 12 DKTKLSDFSDLETKSE--------------YV---HQTAEPGDFSFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRV 74 (673)
T ss_pred CceEEeecccccCccc--------------cc---cCCCCCcceeeeccccceEEEeecCCceeEEEecccCCCCcccee
Confidence 3799999876544321 00 111233499999998664 333445688899997654311 1111
Q ss_pred eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEE
Q 001319 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1101)
Q Consensus 445 ~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~w 523 (1101)
..+.+. .-.|++...... ++++|+..+.|+||| ....+.+.+++|+..|++|.+... ..+|++++..|.|.+.
T Consensus 75 ~k~~gd--~~~Cv~~~s~S~--y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~--DeyiAsvs~gGdiiih 148 (673)
T KOG4378|consen 75 RKLTGD--NAFCVACASQSL--YEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNT--DEYIASVSDGGDIIIH 148 (673)
T ss_pred eccccc--hHHHHhhhhcce--eeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCC--cceeEEeccCCcEEEE
Confidence 122222 233333333334 899999999999999 655566788999999999999764 4799999999999999
Q ss_pred ecCCCCeeeeccCC-CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC-CEEE
Q 001319 524 LYDTMGSRVDYDAP-GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFL 601 (1101)
Q Consensus 524 d~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~ 601 (1101)
.+.++.....+... +..|+-+.|++..+.+++... .+|.|.+||+....++..+...+..+...+||+|.. ..|+
T Consensus 149 ~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~as---d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 149 GTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIAS---DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred ecccCccccceecCCCCeEEEeecccccceeeEeec---cCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEE
Confidence 99888777776665 456779999999888776543 389999999998888887766666578889999965 4667
Q ss_pred EEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccC
Q 001319 602 AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1101)
Q Consensus 602 ~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 670 (1101)
+.|.|..|++||....+....+.... +...++|+++|.+|+.|...|.|..||++....++..+..
T Consensus 226 sVG~Dkki~~yD~~s~~s~~~l~y~~---Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sa 291 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQASTDRLTYSH---PLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSA 291 (673)
T ss_pred EecccceEEEeecccccccceeeecC---CcceeeecCCceEEEeecCCceEEEEecccCCCCceEeee
Confidence 78999999999999877776665432 6789999999999999999999999999877655555443
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.81 E-value=4e-18 Score=173.50 Aligned_cols=297 Identities=17% Similarity=0.245 Sum_probs=211.8
Q ss_pred CcccEEEEEeecCcc--cEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 736 TSSKVVRLLYTNSAV--GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~--~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
+...|++++|+|... .+++|...|.|-+||+..+....++... ...|..+|.++.|+
T Consensus 185 ~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~---------------------f~~hs~~Vs~l~F~ 243 (498)
T KOG4328|consen 185 TDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYL---------------------FTPHSGPVSGLKFS 243 (498)
T ss_pred cccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEE---------------------eccCCccccceEec
Confidence 788999999999765 4555666799999998643322222111 11389999999999
Q ss_pred CCCC--eEEEEcCCeEEEEECCCceEEEEeeC--CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCC
Q 001319 814 KNDS--YVMSATGGKISLFNMMTFKVMTTFMS--PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQ 888 (1101)
Q Consensus 814 ~dg~--~la~~~dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~ 888 (1101)
|.+. .+.+..||+|++-|++++.....+.. .......+.|+. +...++.|..=|...+||+.++.. ...+.-|.
T Consensus 244 P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~-e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~ 322 (498)
T KOG4328|consen 244 PANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSA-ESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHK 322 (498)
T ss_pred CCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccC-CCccEEEeecccceEEEEeecCCccchhhhhhh
Confidence 9543 44444599999999987654333333 445577888988 555566666667999999997654 66778899
Q ss_pred CCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcC-
Q 001319 889 KRITGLAFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDAS- 965 (1101)
Q Consensus 889 ~~V~~l~~s~d~-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~- 965 (1101)
..|..|+++|-. .+|+|+|.|++++|||+..-.......+.... |. ..|.+..|||++-.|++ +.|..|+|||..
T Consensus 323 kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~-Hr-rsV~sAyFSPs~gtl~TT~~D~~IRv~dss~ 400 (498)
T KOG4328|consen 323 KKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLP-HR-RSVNSAYFSPSGGTLLTTCQDNEIRVFDSSC 400 (498)
T ss_pred cccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceeccc-cc-ceeeeeEEcCCCCceEeeccCCceEEeeccc
Confidence 999999999975 48899999999999999875544432233222 33 68999999998877777 669999999984
Q ss_pred ---CceeeeEeccCCCCCC--CEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 966 ---KMERIRQWTPQDALSA--PISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 966 ---~~~~~~~~~~~~~h~~--~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
.......+.-.+.+.. ......|.||..++++|..-..|-|+|-..++.++.+..... ..+ +-..
T Consensus 401 ~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~---------~tI-~~vn 470 (498)
T KOG4328|consen 401 ISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPES---------STI-PSVN 470 (498)
T ss_pred ccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccc---------ccc-ccce
Confidence 3333333332222222 234568999999999999999999999999998887653221 111 1246
Q ss_pred EEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1041 AAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.|+|.+..+++-++..|.|.||--+.
T Consensus 471 ~~HP~~~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 471 EFHPMRDTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred eecccccceeccCCccceEEEEecCC
Confidence 79996555666667788999986543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.9e-18 Score=170.10 Aligned_cols=253 Identities=17% Similarity=0.241 Sum_probs=188.5
Q ss_pred CCCCCEeEEEecCCCCeEEEE--c-CCeEEEEECC----------------CceEEEEeeCCCCCeeEEEEecCCCCEEE
Q 001319 802 NLEEAVPCIALSKNDSYVMSA--T-GGKISLFNMM----------------TFKVMTTFMSPPPASTFLAFHPQDNNIIA 862 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~--~-dg~i~vwd~~----------------~~~~~~~~~~~~~~i~~l~~s~~~~~~la 862 (1101)
.|.+.+..+..++-|+-.+++ + .|.|.||++. ..+++.++.+|...-..++|||-....|+
T Consensus 149 ~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~Ll 228 (440)
T KOG0302|consen 149 PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLL 228 (440)
T ss_pred ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccc
Confidence 377777777777765544333 4 6999999984 23567788899999999999995445677
Q ss_pred EEeCCCcEEEEEeecceEE---EeeccCCCCeeEEEEcCCC-CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 863 IGTEDSTIHIYNVRVDEVK---SKLKGHQKRITGLAFSTSL-NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 863 ~g~~dg~v~iwd~~~~~~~---~~~~~h~~~V~~l~~s~d~-~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
+|.--+.|++|...+|.=. ..|.+|...|-.|+|||.. ..|+|||.||+|+|||+..+........ ..|. +.
T Consensus 229 sGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~---kAh~-sD 304 (440)
T KOG0302|consen 229 SGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST---KAHN-SD 304 (440)
T ss_pred cCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe---eccC-Cc
Confidence 8888889999999887432 4567899999999999964 5899999999999999999865544443 2333 68
Q ss_pred cceEEEcCCCCEEEEE-eCCeEEEEEcCC---ceeeeEeccCCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCc
Q 001319 939 DTRVQFNADQVRMLVV-HETQLAIYDASK---MERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~-~d~~i~v~d~~~---~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
|..+.|+..-.+|++| +||.++|||++. ++.+..+..| ..+|++|.|+|.. ..+++++.|..|.+||+..-.
T Consensus 305 VNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~H---k~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 305 VNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYH---KAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEA 381 (440)
T ss_pred eeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEec---cCCeeEEEeccccCceEEeccCCCcEEEEEeeccC
Confidence 9999999999988885 489999999875 4566777765 9999999999854 567788899999999997532
Q ss_pred e---eEeeC---CCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEE
Q 001319 1014 L---RCYIA---PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1062 (1101)
Q Consensus 1014 ~---~~~~~---~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iW 1062 (1101)
- ..... ....-+...+=|...-.+-.+.|+++-+.++++.+-||- .||
T Consensus 382 D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dGf-nVf 435 (440)
T KOG0302|consen 382 DEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDGF-NVF 435 (440)
T ss_pred ChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccce-eEE
Confidence 1 00000 001112222335444455579999999999999999985 444
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=4.3e-17 Score=168.63 Aligned_cols=493 Identities=12% Similarity=0.102 Sum_probs=292.4
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEE------ecCCCceEEEEecCCceE
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~------s~d~~~~~l~s~~~d~~v 477 (1101)
.|...|.|+.|+.+...+.+++.+..+.-||+.+.. .... .-....|....+ -..++.-.++.++.||.+
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s-~~~~---~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDS-VEVA---KLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchh-hhhh---hCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 467788899999888877776655544445554432 2211 111111111111 001111167888899999
Q ss_pred EEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 478 ~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
.+-+..|+.-.....|.+.+.+-.|++ ||.-|+++++||.|++|. +++-...++......|.|++|.|+...++.|.
T Consensus 88 ~il~k~~rVE~sv~AH~~A~~~gRW~~--dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~ 164 (737)
T KOG1524|consen 88 VILNKSARVERSISAHAAAISSGRWSP--DGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ 164 (737)
T ss_pred EEecccchhhhhhhhhhhhhhhcccCC--CCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEec
Confidence 999999999899999999999999988 567799999999999997 44444555666777899999999999888875
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
.+.+.|=.+.....+-..+.|.+ .+-++.|++..+.+++||+|-..++||.. |..+..-..+.. +|++++|
T Consensus 165 -----g~h~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~lI~sgGED~kfKvWD~~-G~~Lf~S~~~ey--~ITSva~ 235 (737)
T KOG1524|consen 165 -----GGHISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSNIIASGGEDFRFKIWDAQ-GANLFTSAAEEY--AITSVAF 235 (737)
T ss_pred -----CCeEEEeecccccceeEEeccCc-EEEEeecCccccceeecCCceeEEeeccc-CcccccCChhcc--ceeeeee
Confidence 55677777777777778888887 89999999999999999999999999975 444444444444 8999999
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
+|+ ..++.++. +++++ +
T Consensus 236 npd-~~~~v~S~-nt~R~---~---------------------------------------------------------- 252 (737)
T KOG1524|consen 236 NPE-KDYLLWSY-NTARF---S---------------------------------------------------------- 252 (737)
T ss_pred ccc-cceeeeee-eeeee---c----------------------------------------------------------
Confidence 999 66666554 23331 0
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC-CCCCCCe--eeeccccccccCCccce
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE-QNPSGKA--TASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~-~~~~~~~--~~~~~~~~~~~~~~~~~ 794 (1101)
....+.|..+.|++||..+..++..|.+.+--.-... ....++. .....+.+-++.++...
T Consensus 253 ----------------~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~A~~ieq~l~~~n~~~t~~~r~~I~vrdV~~~v~d 316 (737)
T KOG1524|consen 253 ----------------SPRVGSIFNLSWSADGTQATCGTSTGQLIVAYAIEQQLVSGNLKATSKSRKSITVRDVATGVQD 316 (737)
T ss_pred ----------------CCCccceEEEEEcCCCceeeccccCceEEEeeeehhhhhhccceeEeeccceEEeehhhhhHHH
Confidence 1145567778888888888888888776543221111 1111111 11112333344444331
Q ss_pred eeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 795 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
.. .....+...++ .-..|+++....+++|.-........+.+....+.-+.- ..+++. ....-+|.+|.
T Consensus 317 ~L-----E~p~rv~k~sL--~Y~hLvvaTs~qvyiys~knwntpiiidgre~tr~lieq---~ek~fl-i~dgsSi~lyt 385 (737)
T KOG1524|consen 317 IL-----EFPQRVVKFSL--GYGHLVVATSLQVYIYSEKNWNTPIIIDGREDTRNLIEQ---GEKYFL-ILDGSSIWLYT 385 (737)
T ss_pred Hh-----hCccceeeeee--ceeEEEEEeccEEEEEecCCccCcEEEeccccchhHhhh---hhhheE-EecCcEEEEEE
Confidence 11 13445555543 345667777778888887766555555544333322222 122222 22334566666
Q ss_pred eecceEEE-eeccCCCCe---eEEEEcCCCCEEEEE--eCCCcEEEEEC-CCCccccceEEeecCCCCCCCcceEEEc--
Q 001319 875 VRVDEVKS-KLKGHQKRI---TGLAFSTSLNILVSS--GADAQLCVWSI-DTWEKRKSVTIHIPAGKTPTGDTRVQFN-- 945 (1101)
Q Consensus 875 ~~~~~~~~-~~~~h~~~V---~~l~~s~d~~~l~s~--s~Dg~v~lwd~-~~~~~~~~~~~~~~~~~~~~~v~~~~~s-- 945 (1101)
........ .+.+..-++ ..+....| .|+.- .+...+.++|. .+|+.+..... ... . ..+..++..
T Consensus 386 yegR~~~np~~Pg~~~dlL~~rtlsLand--tLaird~ad~kvlhlFd~istgk~qgDgk~--L~h-k-~~IveIAldqk 459 (737)
T KOG1524|consen 386 YEGRLHLNPRYPGSQIDLLTWRTLSLAND--TLAIRDNADPKVLHLFDLISTGKRQGDGKS--LRH-K-QQIVEIALDQK 459 (737)
T ss_pred ecCceecCCCCCCcccccccceeeecccc--eEEeecCCCCeeEEeccCCCCCcccCCccc--cch-h-hhHHHhHhhcc
Confidence 54332211 111111100 12233222 33332 23345778888 66654322110 000 0 222223332
Q ss_pred --CCCCEEEEE-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 946 --ADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 946 --~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
++.+.++.- .++.+.|-...+...-..+... ..-|..++|+ |-.-+++|-.|+.+.||-+.+.
T Consensus 460 G~tnDrkVAFiDknrdl~ItsvKrfgkee~I~Ki---GTmVhtLawn-dttNiLcglqDt~fsVWy~pn~ 525 (737)
T KOG1524|consen 460 GLTNDRKVAFIDKNRDLFITSVKRFGKEEEIYKI---GTMVHTLAWN-DTTNILCGLQDTCFSVWYYPNE 525 (737)
T ss_pred CCCccceEEEEecCCcEEEEeehhcCchhhhhhh---hhhhhhhhhc-cccceeeeeccceEEEEEcCCc
Confidence 233334432 3455555555443322222211 5567888997 4455788999999999988764
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.80 E-value=9.7e-18 Score=162.89 Aligned_cols=228 Identities=14% Similarity=0.167 Sum_probs=167.8
Q ss_pred cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCe
Q 001319 747 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGK 826 (1101)
Q Consensus 747 ~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~ 826 (1101)
|+..++++.+.+.-|++||.-+++.. ++ -+.+|.. ..-....+++|+|||..|.+|....
T Consensus 121 P~t~l~a~ssr~~PIh~wdaftG~lr------aS--y~~ydh~------------de~taAhsL~Fs~DGeqlfaGykrc 180 (406)
T KOG2919|consen 121 PSTNLFAVSSRDQPIHLWDAFTGKLR------AS--YRAYDHQ------------DEYTAAHSLQFSPDGEQLFAGYKRC 180 (406)
T ss_pred CccceeeeccccCceeeeeccccccc------cc--hhhhhhH------------HhhhhheeEEecCCCCeEeecccce
Confidence 66777888888999999986543211 10 0111100 0122345799999999999999999
Q ss_pred EEEEEC-CCceEEE---Ee----eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcC
Q 001319 827 ISLFNM-MTFKVMT---TF----MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST 898 (1101)
Q Consensus 827 i~vwd~-~~~~~~~---~~----~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~ 898 (1101)
|++||+ ..|..-. ++ .+..+-|.+++|+|.+.+.+|+|+...++-||.-..+.++..+-+|.+.|+.|.|.+
T Consensus 181 irvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~e 260 (406)
T KOG2919|consen 181 IRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCE 260 (406)
T ss_pred EEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEecc
Confidence 999999 4443211 11 123567899999998888999999999999999999999999999999999999999
Q ss_pred CCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcce--EEEcCCCCEEEEE-eCCeEEEEEcCC-ceeeeEe
Q 001319 899 SLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR--VQFNADQVRMLVV-HETQLAIYDASK-MERIRQW 973 (1101)
Q Consensus 899 d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~--~~~s~d~~~l~~~-~d~~i~v~d~~~-~~~~~~~ 973 (1101)
||+.|.+|+. |-.|..||+...... +-.+.++....-.. ....|++.+|++| .||.|++||+++ +..+..+
T Consensus 261 dGn~lfsGaRk~dkIl~WDiR~~~~p----v~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 261 DGNKLFSGARKDDKILCWDIRYSRDP----VYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred CcCeecccccCCCeEEEEeehhccch----hhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 9999999885 677999999864321 11122222112223 4447899999997 599999999998 6656555
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCC
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFATFCD 1001 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s~~~d 1001 (1101)
..+ ...+..+++.|-=.++++++..
T Consensus 337 ~~~---sd~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 337 GNY---SDTVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred ccc---cccccceecCcccceeeeccCc
Confidence 554 8889999999997778877744
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-17 Score=164.97 Aligned_cols=233 Identities=13% Similarity=0.215 Sum_probs=182.7
Q ss_pred ccccCCccEEEEEEcc-CCCEEEEEECCCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 401 IFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
.+.||+++|..++|+| +...||+|+.|.+|.||.+-.+... .....|.||...|--++|.|-..+ +|+|++.|.
T Consensus 76 ~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~N-VLlsag~Dn 154 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPN-VLLSAGSDN 154 (472)
T ss_pred CccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchh-hHhhccCCc
Confidence 5889999999999999 7789999999999999998654332 334478999999999999999887 899999999
Q ss_pred eEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC-ceEEEEEccCCCEE
Q 001319 476 LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCTTMLYSADGSRL 553 (1101)
Q Consensus 476 ~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~~~~~s~d~~~l 553 (1101)
+|.+|| .+|+.+.++. |.+.|.++.|+. ||.++++++.|+.||+||.++++...+-..|.+ .-..+.|-.+|. +
T Consensus 155 ~v~iWnv~tgeali~l~-hpd~i~S~sfn~--dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~-i 230 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLD-HPDMVYSMSFNR--DGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGK-I 230 (472)
T ss_pred eEEEEeccCCceeeecC-CCCeEEEEEecc--CCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCc-e
Confidence 999999 9999888888 999999999977 778999999999999999999998887766644 556677888998 6
Q ss_pred EEeecCCCCCceEEEEeCCCCee---EEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCee-eEeeccCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI-LTSTDAEGG 628 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~-~~~~~~~~~ 628 (1101)
++.+.++-.+.++-+||...-+. ...+... ..+-.--|.+|.+.++.+| .|+.|+-|.+....+ ++.+..-..
T Consensus 231 ~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtS--nGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 231 FTTGFSRMSERQIALWDPNNLEEPIALQELDTS--NGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred eeeccccccccceeccCcccccCcceeEEeccC--CceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 66666777788999999765432 3333332 2355556788888887766 899999999977653 222222222
Q ss_pred CCCCCeeEEecC
Q 001319 629 LPNLPRLRFSKE 640 (1101)
Q Consensus 629 ~~~v~~v~~s~~ 640 (1101)
..+-..+.|-|.
T Consensus 309 ~epQRG~g~mPK 320 (472)
T KOG0303|consen 309 KEPQRGMGFMPK 320 (472)
T ss_pred CCcccccccccc
Confidence 223456666664
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.9e-15 Score=163.49 Aligned_cols=575 Identities=11% Similarity=0.086 Sum_probs=338.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-----
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----- 417 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd----- 417 (1101)
|...-.++.|+|.| |+|-|+. ..|.+-|..+-+.+. .+..|...|+.+.|.|-
T Consensus 14 ~~sN~~A~Dw~~~G--LiAygsh-slV~VVDs~s~q~iq-------------------sie~h~s~V~~VrWap~~~p~~ 71 (1062)
T KOG1912|consen 14 SRSNRNAADWSPSG--LIAYGSH-SLVSVVDSRSLQLIQ-------------------SIELHQSAVTSVRWAPAPSPRD 71 (1062)
T ss_pred CcccccccccCccc--eEEEecC-ceEEEEehhhhhhhh-------------------ccccCccceeEEEeccCCCchh
Confidence 44457889999999 6787754 578888988777664 26678999999999883
Q ss_pred -------CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec---CCCceEEEEecCCceEEEEE-cCCce
Q 001319 418 -------GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 418 -------g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
.-.||++...|.|.+||...+..+. .+..|.++|.+++|-+ +.+. +|++-....++.+|+ .+|..
T Consensus 72 llS~~~~~lliAsaD~~GrIil~d~~~~s~~~---~l~~~~~~~qdl~W~~~rd~Srd-~LlaIh~ss~lvLwntdtG~k 147 (1062)
T KOG1912|consen 72 LLSPSSSQLLIASADISGRIILVDFVLASVIN---WLSHSNDSVQDLCWVPARDDSRD-VLLAIHGSSTLVLWNTDTGEK 147 (1062)
T ss_pred ccCccccceeEEeccccCcEEEEEehhhhhhh---hhcCCCcchhheeeeeccCcchh-eeEEecCCcEEEEEEccCCce
Confidence 2367888889999999999887665 5778999999999976 3434 666667788999999 99999
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC------CeeeeccCC-CC--------------------
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM------GSRVDYDAP-GH-------------------- 539 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~------~~~~~~~~~-~~-------------------- 539 (1101)
............++.+.|-.. ..+..-+..|.+.+-+.-.. ...+.+... ..
T Consensus 148 ~Wk~~ys~~iLs~f~~DPfd~-rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~s 226 (1062)
T KOG1912|consen 148 FWKYDYSHEILSCFRVDPFDS-RHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPAS 226 (1062)
T ss_pred eeccccCCcceeeeeeCCCCc-ceEEEEccCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcc
Confidence 888877666777788776543 34444455566655543211 111111111 00
Q ss_pred -----ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC--CEEEEEeCCCcEEEE
Q 001319 540 -----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ--NHFLAVGEDSQIKFW 612 (1101)
Q Consensus 540 -----~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~~~dg~i~iw 612 (1101)
....++|+|.-+.++.... ...+.++|++-..++....-..+ .+..+.+-|++ ..|++...||.+.+|
T Consensus 227 a~fity~a~faf~p~~rn~lfi~~----prellv~dle~~~~l~vvpier~-~akfv~vlP~~~rd~LfclH~nG~ltir 301 (1062)
T KOG1912|consen 227 AYFITYCAQFAFSPHWRNILFITF----PRELLVFDLEYECCLAVVPIERG-GAKFVDVLPDPRRDALFCLHSNGRLTIR 301 (1062)
T ss_pred hhHHHHHHhhhcChhhhceEEEEe----ccceEEEcchhhceeEEEEeccC-CcceeEeccCCCcceEEEEecCCeEEEE
Confidence 0123567786655444443 66799999999888888776555 45567777765 568889999999999
Q ss_pred ECCCC----------------eeeEeeccCCCCCCCCeeEEecC-CCEEEEEEcCCcEEEEEccccccccccccCCCccc
Q 001319 613 DMDNV----------------NILTSTDAEGGLPNLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA 675 (1101)
Q Consensus 613 d~~~~----------------~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~ 675 (1101)
-.+.. +....+..-... ........|. ...++.--.+|.+.+|.+.++........+.....
T Consensus 302 vrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~-rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~ 380 (1062)
T KOG1912|consen 302 VRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEF-RPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELV 380 (1062)
T ss_pred EeeccCccccccchhhccccccceEEEeechhc-ccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCccccccccccc
Confidence 76542 112222111111 1122233343 44555556678888998876522111111000000
Q ss_pred -----c-----cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEe
Q 001319 676 -----L-----RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLY 745 (1101)
Q Consensus 676 -----~-----~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 745 (1101)
. .....-..++.||..- ++ .......... ..+-..-
T Consensus 381 ~pf~f~~~~~~v~k~~l~~LS~dg~h~----sG---------------s~~~~~~p~p---------------~~t~~~~ 426 (1062)
T KOG1912|consen 381 LPFDFNLSTKLVGKTSLISLSDDGSHS----SG---------------STCVRMRPMP---------------ELTKVEN 426 (1062)
T ss_pred ccccccCceeehhhccccchhhcCCCC----CC---------------ceeeecccCc---------------ccceeec
Confidence 0 0000001111111000 00 0000000000 0000111
Q ss_pred ecCc-------ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCe
Q 001319 746 TNSA-------VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 818 (1101)
Q Consensus 746 s~~~-------~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 818 (1101)
.|.| ..++.|++.|+|.++|+..+.... .+. -|...|.++.|-.+.++
T Consensus 427 ~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~-----------------------~fs--vht~~VkgleW~g~ssl 481 (1062)
T KOG1912|consen 427 DPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAA-----------------------SFS--VHTSLVKGLEWLGNSSL 481 (1062)
T ss_pred CCCCCccceeeeeEEeecCCceEEEEEecchhhhh-----------------------hhc--ccccceeeeeeccceeE
Confidence 1111 235667778999999876432211 111 28888999998877766
Q ss_pred EEEEc----------CCeEEEEECCCceEEE--EeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe--
Q 001319 819 VMSAT----------GGKISLFNMMTFKVMT--TFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-- 883 (1101)
Q Consensus 819 la~~~----------dg~i~vwd~~~~~~~~--~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~-- 883 (1101)
+-.+. .+.+.+-|+.+|.... .+++ ...+|+.+..|. .++||+..-.|.-+.+||+++..+++.
T Consensus 482 vSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~-~~~yLai~Fr~~plEiwd~kt~~~lr~mS 560 (1062)
T KOG1912|consen 482 VSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSS-SGRYLAILFRREPLEIWDLKTLRMLRLMS 560 (1062)
T ss_pred EEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecc-cCceEEEEecccchHHHhhccchHHHHHh
Confidence 65442 1347888998886543 2233 346799999999 899999999999999999965322110
Q ss_pred ------------eccC------------------------CCCe---------------------------eEEEEcCCC
Q 001319 884 ------------LKGH------------------------QKRI---------------------------TGLAFSTSL 900 (1101)
Q Consensus 884 ------------~~~h------------------------~~~V---------------------------~~l~~s~d~ 900 (1101)
+..| ...| -+++| .+
T Consensus 561 ~a~P~it~leWsl~~~~si~qk~ls~q~sms~n~vv~ds~es~~~~~~~~a~~~sdgsq~~~a~esfafal~~mAw--k~ 638 (1062)
T KOG1912|consen 561 LALPLITVLEWSLPKHPSIKQKELSKQSSMSENLVVLDSVESRIYHITLSALVVSDGSQVNTAWESFAFALCAMAW--KD 638 (1062)
T ss_pred hcCCcEEEEeecccCCCCcccccchhhhhhhhceeeeccccchheehhhhhhhhccccchhhHHHHHHHHHHhhhc--cC
Confidence 0000 0111 11222 35
Q ss_pred CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCC
Q 001319 901 NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS 980 (1101)
Q Consensus 901 ~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~ 980 (1101)
..|+.|..+|.+.+||+............ +.........+-|....+++-....+-+||.+....+..+.+.+. .
T Consensus 639 d~lv~GD~~GNl~~WDlg~R~SRg~~d~p----~~ra~~l~~~~ipG~~~~lvl~~d~~~lwdtk~~~lV~siag~ds-s 713 (1062)
T KOG1912|consen 639 DILVVGDVEGNLVVWDLGRRQSRGVRDSP----DPRAHSLTFPQIPGDHTTLVLELDWLPLWDTKADTLVLSIAGMDS-S 713 (1062)
T ss_pred CeeEeecccCceeEEecccccccCccCCC----CchhhheecccCCCCceEEEEecCcceecccccceeeeeeccCCc-c
Confidence 67999999999999998765332211111 111233334445554456666667899999999988888855422 3
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 981 APISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 981 ~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
..+..+.+......++ ..|..+|+-.+..........
T Consensus 714 frlldvdlc~~~~~~l--~~d~~~Rf~~m~mks~~ll~~ 750 (1062)
T KOG1912|consen 714 FRLLDVDLCEKSPLVL--PNDNKERFRVMPMKSPPLLPK 750 (1062)
T ss_pred eEEEEEEecccCceec--CCCCceeEEeccccCCccccC
Confidence 4455555544333333 334478877776655444333
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=3.1e-18 Score=194.36 Aligned_cols=259 Identities=12% Similarity=0.165 Sum_probs=200.0
Q ss_pred eecCCCcEEEEEEecCCce---EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 340 SLHQGSTVISMDFHPSHQT---LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~---llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+.-...-..++|.+.|.. ++|.|..||.|.+||...- +..... + .......|.+.|..+.|++
T Consensus 60 s~~s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~--~~~~~~----------~-~la~~~~h~G~V~gLDfN~ 126 (1049)
T KOG0307|consen 60 SLQSSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASI--IANASE----------E-VLATKSKHTGPVLGLDFNP 126 (1049)
T ss_pred cccccccceeeeecccCCCccceeeccccCCceEEecchhh--ccCcch----------H-HHhhhcccCCceeeeeccc
Confidence 3445668889999998876 6899999999999998652 110000 0 1124677999999999999
Q ss_pred CCC-EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 417 DGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 417 dg~-~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
.+. +||+|+.||.|.|||++.-+...... -..-.+.|.+++|+..-.+ +|++++.+|.+.||| ...+.+..+..|.
T Consensus 127 ~q~nlLASGa~~geI~iWDlnn~~tP~~~~-~~~~~~eI~~lsWNrkvqh-ILAS~s~sg~~~iWDlr~~~pii~ls~~~ 204 (1049)
T KOG0307|consen 127 FQGNLLASGADDGEILIWDLNKPETPFTPG-SQAPPSEIKCLSWNRKVSH-ILASGSPSGRAVIWDLRKKKPIIKLSDTP 204 (1049)
T ss_pred cCCceeeccCCCCcEEEeccCCcCCCCCCC-CCCCcccceEeccchhhhH-HhhccCCCCCceeccccCCCcccccccCC
Confidence 766 99999999999999998754333111 1234568999999988776 899999999999999 6666777776655
Q ss_pred c--CeEEEecccCCCccEEEEeccCC--eEEEEecCCCCe-eeeccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEE
Q 001319 495 A--PVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 495 ~--~v~~v~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~i 568 (1101)
+ .+..++|+|+...+++++...|+ .|.+||++.... ..++..|...|.++.|++.+ +++++++. |+.|.+
T Consensus 205 ~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgk----D~~ii~ 280 (1049)
T KOG0307|consen 205 GRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGK----DNRIIC 280 (1049)
T ss_pred CccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccC----CCCeeE
Confidence 4 47889999986544444444443 699999876544 45667899999999999977 77778775 999999
Q ss_pred EeCCCCeeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCCe
Q 001319 569 WNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~ 618 (1101)
|+.++++.+..+....+ .+..+.|+|... .+++++-||.|.|+.+.+..
T Consensus 281 wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 281 WNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 99999999999988444 788899999776 66668899999999987654
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.4e-18 Score=188.79 Aligned_cols=281 Identities=17% Similarity=0.265 Sum_probs=215.9
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
..++++|-..|+|++|...|+| +++|+.|..|+||..+++.++.. ..||.+.|+.++.+.
T Consensus 183 ikrLlgH~naVyca~fDrtg~~-Iitgsdd~lvKiwS~et~~~lAs-------------------~rGhs~ditdlavs~ 242 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRY-IITGSDDRLVKIWSMETARCLAS-------------------CRGHSGDITDLAVSS 242 (1113)
T ss_pred HHHHHhhhhheeeeeeccccce-EeecCccceeeeeeccchhhhcc-------------------CCCCccccchhccch
Confidence 3466789999999999999986 48999999999999999988763 899999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeE----Eeec
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF----NFEG 492 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~----~~~~ 492 (1101)
+..++|+++.|..|++|.+.++..+. .+.||++.|++++|+|- .+.+.||++++||..-..+. .+..
T Consensus 243 ~n~~iaaaS~D~vIrvWrl~~~~pvs---vLrghtgavtaiafsP~------~sss~dgt~~~wd~r~~~~~y~prp~~~ 313 (1113)
T KOG0644|consen 243 NNTMIAAASNDKVIRVWRLPDGAPVS---VLRGHTGAVTAIAFSPR------ASSSDDGTCRIWDARLEPRIYVPRPLKF 313 (1113)
T ss_pred hhhhhhhcccCceEEEEecCCCchHH---HHhccccceeeeccCcc------ccCCCCCceEeccccccccccCCCCCCc
Confidence 99999999999999999999998777 68899999999999985 46788999999994322111 1111
Q ss_pred -CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC-EEEEeecCCCCCceEEEEe
Q 001319 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 493 -h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd 570 (1101)
...-+.++.| ..++..+++++.|+.-+.|.+.-... +...+.-+.++.|-. +.++.- .+..+.+|+
T Consensus 314 ~~~~~~~s~~~--~~~~~~f~Tgs~d~ea~n~e~~~l~~------~~~~lif~t~ssd~~~~~~~ar----~~~~~~vwn 381 (1113)
T KOG0644|consen 314 TEKDLVDSILF--ENNGDRFLTGSRDGEARNHEFEQLAW------RSNLLIFVTRSSDLSSIVVTAR----NDHRLCVWN 381 (1113)
T ss_pred ccccceeeeec--cccccccccccCCcccccchhhHhhh------hccceEEEeccccccccceeee----eeeEeeeee
Confidence 1233445544 33567789999999998886542211 111122222222322 233332 267788999
Q ss_pred CCCCeeEEEecccCCcceEEEEEeCCCCEE-EEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
+.+|...+...+|.. .+..+.++|-+..+ .+++.||...|||+-.|.+++.+... ...+...+||++|..++....
T Consensus 382 l~~g~l~H~l~ghsd-~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g--h~kl~d~kFSqdgts~~lsd~ 458 (1113)
T KOG0644|consen 382 LYTGQLLHNLMGHSD-EVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG--HGKLVDGKFSQDGTSIALSDD 458 (1113)
T ss_pred cccchhhhhhccccc-ceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc--cceeeccccCCCCceEecCCC
Confidence 999999999999987 78889999976555 45899999999999998888776532 336788899999999999888
Q ss_pred CCcEEEEEcccc
Q 001319 650 DNGFKILANAIG 661 (1101)
Q Consensus 650 d~~i~iwd~~~~ 661 (1101)
-|.++|.....+
T Consensus 459 hgql~i~g~gqs 470 (1113)
T KOG0644|consen 459 HGQLYILGTGQS 470 (1113)
T ss_pred CCceEEeccCCC
Confidence 899998876544
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.4e-17 Score=171.02 Aligned_cols=164 Identities=16% Similarity=0.196 Sum_probs=129.0
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.||++.|.|++|+.||.+||+|+.|-.+.|||.-..+.+..+ -.||...|.++.|-|....-+++||..|..|+++
T Consensus 45 eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI--~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 45 ELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSI--STGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeee--ecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 48999999999999999999999999999999999977766543 3499999999999997655589999999999999
Q ss_pred EcCC-----------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----------eccCCCC
Q 001319 481 ELSG-----------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGH 539 (1101)
Q Consensus 481 d~~~-----------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~~~~ 539 (1101)
|.+. .....+..|...|..++..|.. ...+.++++||+|+-+|++...... .+...--
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~-PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~li 201 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNG-PHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLI 201 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCC-CceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhh
Confidence 9331 2345567799999999876643 2789999999999999998633211 1111112
Q ss_pred ceEEEEEccCCC-EEEEeecCCCCCceEEEEeC
Q 001319 540 WCTTMLYSADGS-RLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 540 ~v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~ 571 (1101)
...++.++|... +|++|+. +...++||.
T Consensus 202 elk~ltisp~rp~~laVGgs----dpfarLYD~ 230 (758)
T KOG1310|consen 202 ELKCLTISPSRPYYLAVGGS----DPFARLYDR 230 (758)
T ss_pred eeeeeeecCCCCceEEecCC----Cchhhhhhh
Confidence 457899999665 5666664 788999995
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=9.4e-17 Score=156.31 Aligned_cols=388 Identities=12% Similarity=0.090 Sum_probs=237.5
Q ss_pred EEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE-ECC
Q 001319 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTK 427 (1101)
Q Consensus 349 ~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~-~~d 427 (1101)
-++|||+|+| +|+.+ +..+.|=|..+-+... +-..-+.|..+.|+.|..+++.+ ..|
T Consensus 13 ~c~fSp~g~y-iAs~~-~yrlviRd~~tlq~~q--------------------lf~cldki~yieW~ads~~ilC~~yk~ 70 (447)
T KOG4497|consen 13 FCSFSPCGNY-IASLS-RYRLVIRDSETLQLHQ--------------------LFLCLDKIVYIEWKADSCHILCVAYKD 70 (447)
T ss_pred ceeECCCCCe-eeeee-eeEEEEeccchhhHHH--------------------HHHHHHHhhheeeeccceeeeeeeecc
Confidence 4789999996 47764 4588888887755433 11124578899999999888765 568
Q ss_pred CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCC
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~ 507 (1101)
+.|.+|++...+-.. .+.....++.++.|||||+. +|.+...|-.|.||....+...-+......+..++|++ |
T Consensus 71 ~~vqvwsl~Qpew~c---kIdeg~agls~~~WSPdgrh-iL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~--d 144 (447)
T KOG4497|consen 71 PKVQVWSLVQPEWYC---KIDEGQAGLSSISWSPDGRH-ILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHP--D 144 (447)
T ss_pred ceEEEEEeecceeEE---EeccCCCcceeeeECCCcce-EeeeecceeEEEEEEeccceeEEecccccCceeEEECC--C
Confidence 899999998765444 45667788999999999987 78888899999999944444444554555678899977 6
Q ss_pred ccEEEEeccCCeEEEEecC---CCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC
Q 001319 508 IQFIFSTAIDGKIKAWLYD---TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1101)
Q Consensus 508 ~~~l~s~~~d~~i~~wd~~---~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1101)
|++.+..+.-......++. .-.....+.......+.+.|+|||..+++ ||.--.-.+..+ +.
T Consensus 145 g~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV-------------wd~~Leykv~aY--e~ 209 (447)
T KOG4497|consen 145 GQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV-------------WDNVLEYKVYAY--ER 209 (447)
T ss_pred CceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE-------------ecchhhheeeee--ee
Confidence 6787776653221111111 11122233444455788999999998876 432211111122 12
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCC-----------------CCCeeEEecCCCEEEEE
Q 001319 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP-----------------NLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~-----------------~v~~v~~s~~g~~l~~~ 647 (1101)
+-.+..+.|+|.++++++|+.|+.+++.+--+-+.+..+-...... ...++.|.|.
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~------- 282 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPT------- 282 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCC-------
Confidence 2257779999999999999999999987654444333321110000 0011222211
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
|-...+|..... .++.. ...+++.. ..-.
T Consensus 283 --~~~a~~~~~se~----------~YE~~---~~pv~~~~------------------------------------lkp~ 311 (447)
T KOG4497|consen 283 --DLEAHIWEESET----------IYEQQ---MTPVKVHK------------------------------------LKPP 311 (447)
T ss_pred --ccccCccccchh----------hhhhh---hcceeeec------------------------------------ccCC
Confidence 001111111000 00000 00000000 0000
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecC--CeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCC
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 805 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d--g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1101)
...++ ....+..++|++|..++++-.+. +.+-+||++. -++.... ....
T Consensus 312 tD~pn---Pk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~----------------------l~l~avL----iQk~ 362 (447)
T KOG4497|consen 312 TDFPN---PKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQN----------------------LKLHAVL----IQKH 362 (447)
T ss_pred CCCCC---cccccceeeecCCceEEeeecCCCCceEEEEechh----------------------hhhhhhh----hhcc
Confidence 01111 34456789999999988887765 5666666542 2211111 1567
Q ss_pred CEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 806 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
+|....|.|....|+... ...+++|.......+. ..+..-.|..+.|.- +|..++..+.|.
T Consensus 363 piraf~WdP~~prL~vctg~srLY~W~psg~~~V~-vP~~GF~i~~l~W~~-~g~~i~l~~kDa 424 (447)
T KOG4497|consen 363 PIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVVG-VPKKGFNIQKLQWLQ-PGEFIVLCGKDA 424 (447)
T ss_pred ceeEEEeCCCCceEEEEcCCceEEEEcCCCceEEe-cCCCCceeeeEEecC-CCcEEEEEcCCc
Confidence 899999999988888776 5669999886544443 333456799999998 888888888775
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-15 Score=142.60 Aligned_cols=287 Identities=12% Similarity=0.124 Sum_probs=201.0
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
..|.+-+++|.+++++++..+|.|.+..+..-.... . ...|+... ++..+|..++..++|. ..
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~s---a----------~~~gk~~i--v~eqahdgpiy~~~f~--d~ 73 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGS---A----------EPPGKLKI--VPEQAHDGPIYYLAFH--DD 73 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccc---c----------CCCCCcce--eeccccCCCeeeeeee--hh
Confidence 345566889999999999999999999876321100 0 01111111 1223599999999997 46
Q ss_pred eEEEEcCCeEEEEECCCce------EEEEee-------CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 818 YVMSATGGKISLFNMMTFK------VMTTFM-------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~------~~~~~~-------~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
+|+++.||.|+-|...... ...+.. ..-..|.++-..|..+.++. ++.|+.++-||+.+|+...++
T Consensus 74 ~Lls~gdG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~-AgGD~~~y~~dlE~G~i~r~~ 152 (325)
T KOG0649|consen 74 FLLSGGDGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILF-AGGDGVIYQVDLEDGRIQREY 152 (325)
T ss_pred heeeccCceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEE-ecCCeEEEEEEecCCEEEEEE
Confidence 7888889999988654221 111111 12346899999995555554 448999999999999999999
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCC----CCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 885 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG----KTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 885 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~----~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
+||++-|.++.--.....+.||+.||++|+||..+++............ +....| .+..-+..+|++|....+.
T Consensus 153 rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wi--gala~~edWlvCGgGp~ls 230 (325)
T KOG0649|consen 153 RGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWI--GALAVNEDWLVCGGGPKLS 230 (325)
T ss_pred cCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCcee--EEEeccCceEEecCCCcee
Confidence 9999999999986666678999999999999999988766554322111 111222 4555677889999999999
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
+|.+...++...+.. ..++..+.|- ...++++++.+.|.-|.+. |.+...+.. .++.. ++.
T Consensus 231 lwhLrsse~t~vfpi----pa~v~~v~F~--~d~vl~~G~g~~v~~~~l~-Gvl~a~ip~----------~s~~c--~s~ 291 (325)
T KOG0649|consen 231 LWHLRSSESTCVFPI----PARVHLVDFV--DDCVLIGGEGNHVQSYTLN-GVLQANIPV----------ESTAC--YSA 291 (325)
T ss_pred EEeccCCCceEEEec----ccceeEeeee--cceEEEeccccceeeeeec-cEEEEeccC----------Cccce--eee
Confidence 999999999988887 6788999996 4468888888899999885 555554442 11111 234
Q ss_pred EEecCCCCEEEEEECCCeEEEEe
Q 001319 1041 AAHPLEPNQFAIGLTDGSVKVME 1063 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~v~iWd 1063 (1101)
.|+..--.+|-.++..+.+.|+.
T Consensus 292 s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 292 SWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred cccCCceEEEEecccceeeeeee
Confidence 44332134566667777777764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.1e-17 Score=175.21 Aligned_cols=264 Identities=14% Similarity=0.221 Sum_probs=189.2
Q ss_pred eec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 340 SLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 340 ~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
++. |.+.|++++|.|... .|++++.||.|.+|+++....-... ...+..+|.+|.++|.|+++++++
T Consensus 289 tl~s~~d~ir~l~~~~sep-~lit~sed~~lk~WnLqk~~~s~~~-----------~~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEP-VLITASEDGTLKLWNLQKAKKSAEK-----------DVEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred eeecchhhhhhhhcCCCCC-eEEEeccccchhhhhhcccCCcccc-----------ceeeeEEEecccCceEEEEecCCc
Confidence 444 999999999999988 5689999999999999432111111 111334699999999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCc-------ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee
Q 001319 419 NYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~ 491 (1101)
+++.+|+.||+|+.|++.... .......+.||++.|+.+++++... .|++|+.||+++.|+.++....++.
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~--~Llscs~DgTvr~w~~~~~~~~~f~ 434 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKD--RLLSCSSDGTVRLWEPTEESPCTFG 434 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeeccccc--ceeeecCCceEEeeccCCcCccccC
Confidence 999999999999999664211 1112225779999999999999888 6999999999999994333334443
Q ss_pred cCC--cCeEEEecccCCCccEEEEeccCCeEEEE---ecCCCCeeeeccCC-------CCceEEEEEccCCCEEEEeecC
Q 001319 492 GHE--APVYSICPHHKENIQFIFSTAIDGKIKAW---LYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 492 ~h~--~~v~~v~~~~~~~~~~l~s~~~d~~i~~w---d~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
... +.-.++.+... .++....+...+.+ +++.......+... ...+.-+...|.+...+++..
T Consensus 435 ~~~e~g~Plsvd~~ss----~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~he- 509 (577)
T KOG0642|consen 435 EPKEHGYPLSVDRTSS----RPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHE- 509 (577)
T ss_pred CccccCCcceEeeccc----hhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEeccc-
Confidence 322 22344444321 11112222333333 33333333322211 124667888888888888875
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
+..|+++|..+++++.....|.. .++++++.|+|.+|++++.|+.+++|.+....++.....+
T Consensus 510 ---d~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~ 572 (577)
T KOG0642|consen 510 ---DRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTAH 572 (577)
T ss_pred ---CCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhccchheeeccccc
Confidence 88999999999999999998887 8999999999999999999999999999777666554433
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.1e-17 Score=173.12 Aligned_cols=251 Identities=14% Similarity=0.161 Sum_probs=190.7
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeec-----CCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-----GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~-----~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
++..|.+.|..++|.|-...|++|+.||+|++|+++ ++..+.++.++.+|.++|.|+++.+.+. .+++|+.||
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~--~~ysgg~Dg 366 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGE--HCYSGGIDG 366 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCce--EEEeeccCc
Confidence 577899999999999999999999999999999993 3345667778999999999999999999 799999999
Q ss_pred eEEEEE-c------CC----ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC--CCCceE
Q 001319 476 LIKVWE-L------SG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCT 542 (1101)
Q Consensus 476 ~v~iwd-~------~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~ 542 (1101)
+|+.|+ . +. .....+.||.+.|+.++++... ..|++++.||+++.|+...... ..+.. ......
T Consensus 367 ~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~--~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 367 TIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK--DRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPL 443 (577)
T ss_pred eeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc--cceeeecCCceEEeeccCCcCc-cccCCccccCCcc
Confidence 999995 1 11 2236788999999999998866 4699999999999998765544 22222 222344
Q ss_pred EEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC------CcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 543 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
++.+....-.+..++. .-+.-.+++.+.+.....+.... ...+..+..+|.+...+++.+|+.|+++|..+
T Consensus 444 svd~~ss~~a~~~~s~---~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~ 520 (577)
T KOG0642|consen 444 SVDRTSSRPAHSLASF---RFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKT 520 (577)
T ss_pred eEeeccchhHhhhhhc---ccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccc
Confidence 5555433312222111 12222334444444444443221 12466788999999999999999999999999
Q ss_pred CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++++.....+. ..++++++.|+|.+|++++.|+.+++|.+...
T Consensus 521 ~~~l~s~~a~~--~svtslai~~ng~~l~s~s~d~sv~l~kld~k 563 (577)
T KOG0642|consen 521 GKILHSMVAHK--DSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVK 563 (577)
T ss_pred cccchheeecc--ceecceeecCCCceEEeecCCceeehhhccch
Confidence 99988877654 47899999999999999999999999998654
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=7.5e-17 Score=152.47 Aligned_cols=308 Identities=14% Similarity=0.165 Sum_probs=196.1
Q ss_pred eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcE
Q 001319 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1101)
+.+.+..+...++++.|-.+++ |+++.. .|.|.+|++.+.+....++++....+..+..-|+ ..+.+-+.|+.+
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~r-L~sg~~----~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L 79 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANER-LMSGLS----VGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLL 79 (323)
T ss_pred CeeEeccccchheehhhccchh-hhcccc----cceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceE
Confidence 4455667778899999988887 556553 8899999999999999998777667888888886 688899999999
Q ss_pred EEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC-cEEEEEccccccccccccCCCcccccCcceeeeeeec
Q 001319 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1101)
.+|++..+..+..-.. .++.+.|.+-. +...+... ....++-+.... ...... ..-..+.+.++
T Consensus 80 ~lw~ia~s~~i~i~Si-----~~nslgFCrfS--l~~~~k~~eqll~yp~rgsde-~h~~D~-------g~~tqv~i~dd 144 (323)
T KOG0322|consen 80 ILWTIAYSAFISIHSI-----VVNSLGFCRFS--LVKKPKNSEQLLEYPSRGSDE-THKQDG-------GDTTQVQIADD 144 (323)
T ss_pred EEEEccCcceEEEeee-----eccccccccce--eccCCCcchhheecCCcccch-hhhhcc-------CccceeEccCc
Confidence 9999987554433221 23444444321 11111000 011111110000 000000 00000111111
Q ss_pred cccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEee-cCcc--cEEEeecCCeEEEEE
Q 001319 689 ASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT-NSAV--GLLALGSNGVQKLWK 765 (1101)
Q Consensus 689 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s-~~~~--~l~~~~~dg~v~~w~ 765 (1101)
.. .+..+.+.+..+. ..+. .++++-++|.+.+||
T Consensus 145 ~~-------------------------------------------~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd 181 (323)
T KOG0322|consen 145 SE-------------------------------------------RSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWD 181 (323)
T ss_pred hh-------------------------------------------ccccCceeeeeccccccceEEEEEeccCCeEEEEE
Confidence 00 1122223222211 1122 255666789999999
Q ss_pred ecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCC--ce--EEEE
Q 001319 766 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMT--FK--VMTT 840 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~--~~--~~~~ 840 (1101)
+..+.... +............ .|..+|.++.+.+.-..=++|+ +.++..|+++. +. ...+
T Consensus 182 ~S~~~~~~-------------~~~~~~kv~~~~a--sh~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 182 LSTGDKII-------------QLPQSSKVESPNA--SHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred ccCCceee-------------ccccccccccchh--hccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 87642110 1111111111112 3899999999986544445555 67788887753 32 2333
Q ss_pred eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001319 841 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 841 ~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
+......|..+.+-| |++++|+++.|++|+||+..+...+..++-|.+.|++++|+||...+|.++.|++|.+|++
T Consensus 247 ~~lknpGv~gvrIRp-D~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRP-DGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEcc-CCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 444456789999999 9999999999999999999999999999999999999999999999999999999999986
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-16 Score=156.75 Aligned_cols=296 Identities=12% Similarity=0.134 Sum_probs=210.2
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceecc-ccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~-~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
-.++|.+.|.++.||.+|+ +||+|+.|..+++|+++..-..+. +++.+ .-..|...|.|++|...
T Consensus 51 D~~~H~GCiNAlqFS~N~~-~L~SGGDD~~~~~W~~de~~~~k~~KPI~~-------------~~~~H~SNIF~L~F~~~ 116 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDR-FLASGGDDMHGRVWNVDELMVRKTPKPIGV-------------MEHPHRSNIFSLEFDLE 116 (609)
T ss_pred hhhhhccccceeeeccCCe-EEeecCCcceeeeechHHHHhhcCCCCcee-------------ccCccccceEEEEEccC
Confidence 3467999999999999998 679999999999999864221111 11111 12346789999999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc-ee--EEeecC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KL--FNFEGH 493 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~-~~--~~~~~h 493 (1101)
.++|.+|+.+++|..-|+++.+.+.... -....+.|+.+..+|-.. .|++.+.++.|.+|| .... .+ ..+...
T Consensus 117 N~~~~SG~~~~~VI~HDiEt~qsi~V~~-~~~~~~~VY~m~~~P~DN--~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~ 193 (609)
T KOG4227|consen 117 NRFLYSGERWGTVIKHDIETKQSIYVAN-ENNNRGDVYHMDQHPTDN--TLIVVTRAKLVSFIDNRDRQNPISLVLPANS 193 (609)
T ss_pred CeeEecCCCcceeEeeecccceeeeeec-ccCcccceeecccCCCCc--eEEEEecCceEEEEeccCCCCCCceeeecCC
Confidence 9999999999999999999987665221 122345899999999977 899999999999999 4332 22 222233
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee-------ccCCCCceEEEEEccCCCEEEEeecCCCCCceE
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFL 566 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i 566 (1101)
......+.|+|.. ..+|++.+..+-+-+||++....... +......-.++.|+|.|..+++.-. ...-
T Consensus 194 ~~~F~t~~F~P~~-P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR----~~~P 268 (609)
T KOG4227|consen 194 GKNFYTAEFHPET-PALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRR----GKCP 268 (609)
T ss_pred CccceeeeecCCC-ceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhc----cCCC
Confidence 4456777888764 36889999999999999876544321 1111223367889999999988653 4445
Q ss_pred EEEeCCCCee-EEEecccCC-----cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe----------------------
Q 001319 567 VEWNESEGTI-KRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------------------- 618 (1101)
Q Consensus 567 ~iwd~~~~~~-~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------------------- 618 (1101)
.+||+-+.++ +..+..... ..+.+++|-.|- .+++|+.+-.|++|.+....
T Consensus 269 ~~~D~~S~R~~V~k~D~N~~GY~N~~T~KS~~F~~D~-~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~ 347 (609)
T KOG4227|consen 269 LYFDFISQRCFVLKSDHNPNGYCNIKTIKSMTFIDDY-TVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIE 347 (609)
T ss_pred EEeeeecccceeEeccCCCCcceeeeeeeeeeeecce-eeeccCcccceEEEecCCCccccCccccCcchhhCchhheec
Confidence 6788877444 333331111 134557776654 58899999999999875311
Q ss_pred -eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
.+..+.+| ..-++.+.|+|...+|++.+-.+.+++|.-.
T Consensus 348 ~~~~VLrGH--RSv~NQVRF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 348 KELTVLRGH--RSVPNQVRFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred ceeEEEecc--cccccceeecCCcceEeccchhhheeccccc
Confidence 12233333 4467899999999999999999999999754
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.2e-17 Score=168.23 Aligned_cols=293 Identities=17% Similarity=0.234 Sum_probs=226.0
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg 418 (1101)
-+|.+.|..|.|...|. ++++|+.|..|.+||+..+..... ...||...|....|-| +.
T Consensus 139 ~~H~GcVntV~FN~~Gd-~l~SgSDD~~vv~WdW~~~~~~l~------------------f~SGH~~NvfQaKFiP~s~d 199 (559)
T KOG1334|consen 139 NKHKGCVNTVHFNQRGD-VLASGSDDLQVVVWDWVSGSPKLS------------------FESGHCNNVFQAKFIPFSGD 199 (559)
T ss_pred cCCCCccceeeecccCc-eeeccCccceEEeehhhccCcccc------------------cccccccchhhhhccCCCCC
Confidence 34999999999999998 679999999999999998876542 4678999999999988 56
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe---ecCC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF---EGHE 494 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~---~~h~ 494 (1101)
+.|++++.||.|++=.+...........+..|.++|.-++.-|+..+ -|.|++.|+.+.-.| ..+.....+ ..+.
T Consensus 200 ~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~-~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~ 278 (559)
T KOG1334|consen 200 RTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPK-PFLSCGEDAVVFHIDLRQDVPAEKFVCREADE 278 (559)
T ss_pred cCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCC-cccccccccceeeeeeccCCccceeeeeccCC
Confidence 78999999999999877544444333457789999999999999887 799999999999999 555443222 2233
Q ss_pred c---CeEEEecccCCCccEEEEeccCCeEEEEecCCCCee------eec------cCCCCceEEEEEccCCCEEEEeecC
Q 001319 495 A---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR------VDY------DAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 495 ~---~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~------~~~------~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
. ....++..|.. ...+++++.|..+++||.+.-... ..+ ....-.|++++|+.++.-+++...
T Consensus 279 ~~~v~L~~Ia~~P~n-t~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYn- 356 (559)
T KOG1334|consen 279 KERVGLYTIAVDPRN-TNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYN- 356 (559)
T ss_pred ccceeeeeEecCCCC-ccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeec-
Confidence 3 46778887764 358899999999999997653322 111 122336899999976665555443
Q ss_pred CCCCceEEEEeCCC--C----------eeE-EEecccCCcc-eEEE-EEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 560 KDGDSFLVEWNESE--G----------TIK-RTYAGFRKKS-NGVV-QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~--~----------~~~-~~~~~~~~~~-v~~~-~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
+-.|+++.... | ..+ +.++||.+.. |..+ -|.|...++++|+.-|.|.||+-.+++.+..+.
T Consensus 357 ---De~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~Me 433 (559)
T KOG1334|consen 357 ---DEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFME 433 (559)
T ss_pred ---ccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhh
Confidence 66788885432 2 222 3388887632 3333 467888999999999999999999999999998
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
+..+ -|+|+.-+|--..||+.+-|..|+||...+
T Consensus 434 gDr~--VVNCLEpHP~~PvLAsSGid~DVKIWTP~~ 467 (559)
T KOG1334|consen 434 GDRH--VVNCLEPHPHLPVLASSGIDHDVKIWTPLT 467 (559)
T ss_pred cccc--eEeccCCCCCCchhhccCCccceeeecCCc
Confidence 8776 699999999999999999999999998643
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-15 Score=155.73 Aligned_cols=207 Identities=16% Similarity=0.165 Sum_probs=157.5
Q ss_pred EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC
Q 001319 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1101)
Q Consensus 359 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~ 438 (1101)
.++.++.||.+.|.+-. ++... ....|.++|.|-.|+|||.-|++++.||.|++|.-...
T Consensus 77 ~~~i~s~DGkf~il~k~-~rVE~-------------------sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM 136 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-ARVER-------------------SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM 136 (737)
T ss_pred eEEEEcCCceEEEeccc-chhhh-------------------hhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccch
Confidence 34667889999888743 43332 36779999999999999999999999999999997652
Q ss_pred cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccC
Q 001319 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1101)
Q Consensus 439 ~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d 517 (1101)
++. ++.....+|.|++|.|+... .+.+.+ +.+.|=- .....+-.++.|.+-|.++.|++.. +++++|++|
T Consensus 137 --LRS--tl~Q~~~~v~c~~W~p~S~~-vl~c~g--~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s--~lI~sgGED 207 (737)
T KOG1524|consen 137 --LRS--TVVQNEESIRCARWAPNSNS-IVFCQG--GHISIKPLAANSKIIRWRAHDGLVLSLSWSTQS--NIIASGGED 207 (737)
T ss_pred --HHH--HHhhcCceeEEEEECCCCCc-eEEecC--CeEEEeecccccceeEEeccCcEEEEeecCccc--cceeecCCc
Confidence 332 34466779999999999986 444433 3444444 4444566788999999999998855 699999999
Q ss_pred CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC
Q 001319 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~ 597 (1101)
-..++||- -+...+.-..|..+|++++|.|+ +.++.++ -++++ +.....+.+..++|++||
T Consensus 208 ~kfKvWD~-~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S-----~nt~R------------~~~p~~GSifnlsWS~DG 268 (737)
T KOG1524|consen 208 FRFKIWDA-QGANLFTSAAEEYAITSVAFNPE-KDYLLWS-----YNTAR------------FSSPRVGSIFNLSWSADG 268 (737)
T ss_pred eeEEeecc-cCcccccCChhccceeeeeeccc-cceeeee-----eeeee------------ecCCCccceEEEEEcCCC
Confidence 99999984 45666677778889999999999 5555554 22333 333334478889999999
Q ss_pred CEEEEEeCCCcEEEEE
Q 001319 598 NHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd 613 (1101)
..+++|...|.+.+-.
T Consensus 269 TQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 269 TQATCGTSTGQLIVAY 284 (737)
T ss_pred ceeeccccCceEEEee
Confidence 9999999998876643
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1e-14 Score=160.76 Aligned_cols=274 Identities=15% Similarity=0.198 Sum_probs=170.6
Q ss_pred EEEeccCCeEEEEecCCCCe---eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-CCee--EEEecccC
Q 001319 511 IFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI--KRTYAGFR 584 (1101)
Q Consensus 511 l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~--~~~~~~~~ 584 (1101)
.++...++.|.+|++.+... ...+. .......++++|++++|++++. .++.|.+|++. +++. ......
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~---~~~~i~~~~~~~~g~l~~~~~~~~-- 78 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVD-VPGQVQPMVISPDKRHLYVGVR---PEFRVLSYRIADDGALTFAAESPL-- 78 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEe-cCCCCccEEECCCCCEEEEEEC---CCCcEEEEEECCCCceEEeeeecC--
Confidence 34457789999999964322 22222 3345778999999999988764 36789999986 3433 222221
Q ss_pred CcceEEEEEeCCCCEEEEEe-CCCcEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEcccc
Q 001319 585 KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~ 661 (1101)
......++++|+++++++++ .++.|.+|++.+ +..........+......++++|+|+++++++ .++.|.+||+.+.
T Consensus 79 ~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 79 PGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 12456799999999999876 588999999964 32211111111122457789999999887655 4689999998653
Q ss_pred ccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEE
Q 001319 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVV 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 741 (1101)
.. +....... ...
T Consensus 159 g~-l~~~~~~~-------------------------------------------------------~~~----------- 171 (330)
T PRK11028 159 GH-LVAQEPAE-------------------------------------------------------VTT----------- 171 (330)
T ss_pred Cc-ccccCCCc-------------------------------------------------------eec-----------
Confidence 11 10000000 000
Q ss_pred EEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE
Q 001319 742 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 821 (1101)
Q Consensus 742 ~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 821 (1101)
........++|+|||+++++
T Consensus 172 ------------------------------------------------------------~~g~~p~~~~~~pdg~~lyv 191 (330)
T PRK11028 172 ------------------------------------------------------------VEGAGPRHMVFHPNQQYAYC 191 (330)
T ss_pred ------------------------------------------------------------CCCCCCceEEECCCCCEEEE
Confidence 00111335677777777665
Q ss_pred Ec--CCeEEEEECCC--c--eEEEEeeCC------CCCeeEEEEecCCCCEEEEEeC-CCcEEEEEeecceEEEeeccCC
Q 001319 822 AT--GGKISLFNMMT--F--KVMTTFMSP------PPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQ 888 (1101)
Q Consensus 822 ~~--dg~i~vwd~~~--~--~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~ 888 (1101)
+. +++|.+|+++. + +.+..+... ......+.++| ++++|+++.. ++.|.+|++.......++.+|.
T Consensus 192 ~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~p-dg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 192 VNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITP-DGRHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred EecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECC-CCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 54 56677777652 2 223333221 11234688999 8888888764 7899999997543222222221
Q ss_pred ---CCeeEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 001319 889 ---KRITGLAFSTSLNILVSSGA-DAQLCVWSID 918 (1101)
Q Consensus 889 ---~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~ 918 (1101)
.....++++|||++|+++.. +++|.+|+++
T Consensus 271 ~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 271 PTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 24568999999999998775 8999999885
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.7e-17 Score=163.63 Aligned_cols=201 Identities=19% Similarity=0.221 Sum_probs=159.7
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 849 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
.+++|+. ++..|++|+.||++|||++.+...+.....|.+.|.+|.|||||+.|++.+.| ..+||++.++.......-
T Consensus 148 k~vaf~~-~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNG-DGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcC-CCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7799999 89999999999999999999888888888999999999999999999999999 899999999854433321
Q ss_pred eecCCCCCCCcceEEEcCCC---CEEEEE---eCCeEEEEEcCCcee--eeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 929 HIPAGKTPTGDTRVQFNADQ---VRMLVV---HETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 929 ~~~~~~~~~~v~~~~~s~d~---~~l~~~---~d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
...+.....+.|+.|+ .+.+.. ..+.|+.|++...+. +..+.....-...|++++.|+||++++.|+.
T Consensus 226 ----~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 226 ----FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred ----cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 1122456778888877 333332 256677777654332 1111111111457999999999999999999
Q ss_pred CCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 1001 DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1001 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
||.|.|++..+.+...... +.|...++.+.|+| |.+++++.+.|.+..|..+.-.
T Consensus 302 dGsVai~~~~~lq~~~~vk-----------~aH~~~VT~ltF~P-dsr~~~svSs~~~~~v~~l~vd 356 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVK-----------EAHLGFVTGLTFSP-DSRYLASVSSDNEAAVTKLAVD 356 (398)
T ss_pred CCcEEEEEeceeeeeEeeh-----------hhheeeeeeEEEcC-CcCcccccccCCceeEEEEeec
Confidence 9999999999998887776 67888999999999 7999999999999999888653
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.4e-14 Score=159.80 Aligned_cols=273 Identities=13% Similarity=0.173 Sum_probs=177.9
Q ss_pred eEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-CCCeEEEEee
Q 001319 358 TLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSY 435 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd~ 435 (1101)
+++++...++.|.+|++.+ ++.... ..+. +.+....++++||+++|++++ .++.|.+|++
T Consensus 3 ~~y~~~~~~~~I~~~~~~~~g~l~~~-----------------~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~ 64 (330)
T PRK11028 3 IVYIASPESQQIHVWNLNHEGALTLL-----------------QVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRI 64 (330)
T ss_pred EEEEEcCCCCCEEEEEECCCCceeee-----------------eEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEE
Confidence 3555667899999999964 332110 0121 335677899999999987765 5788999999
Q ss_pred cC-CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCc---eeEEeecCCcCeEEEecccCCCcc
Q 001319 436 AG-SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGR---KLFNFEGHEAPVYSICPHHKENIQ 509 (1101)
Q Consensus 436 ~~-~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~---~~~~~~~h~~~v~~v~~~~~~~~~ 509 (1101)
+. ++ +...... ...+....++|+|+++. ++++...++.|.+|+ . .+. .+..+.+. .....++++| +++
T Consensus 65 ~~~g~-l~~~~~~-~~~~~p~~i~~~~~g~~-l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~-~~~~~~~~~p--~g~ 138 (330)
T PRK11028 65 ADDGA-LTFAAES-PLPGSPTHISTDHQGRF-LFSASYNANCVSVSPLDKDGIPVAPIQIIEGL-EGCHSANIDP--DNR 138 (330)
T ss_pred CCCCc-eEEeeee-cCCCCceEEEECCCCCE-EEEEEcCCCeEEEEEECCCCCCCCceeeccCC-CcccEeEeCC--CCC
Confidence 73 33 2211111 23345678999999994 333344588999999 3 332 23333322 3356677766 556
Q ss_pred EEE-EeccCCeEEEEecCCCCeeee-----c-cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC--C--eeEE
Q 001319 510 FIF-STAIDGKIKAWLYDTMGSRVD-----Y-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--G--TIKR 578 (1101)
Q Consensus 510 ~l~-s~~~d~~i~~wd~~~~~~~~~-----~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~--~~~~ 578 (1101)
+++ +...++.|.+||+++...... . ...+.....++|+|+|++++++.. .++.|.+|++.. + +.+.
T Consensus 139 ~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~---~~~~v~v~~~~~~~~~~~~~~ 215 (330)
T PRK11028 139 TLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE---LNSSVDVWQLKDPHGEIECVQ 215 (330)
T ss_pred EEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec---CCCEEEEEEEeCCCCCEEEEE
Confidence 665 555679999999986432211 1 112345678999999999988764 478999999873 3 2343
Q ss_pred EecccCC-----cceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCe----eeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 579 TYAGFRK-----KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVN----ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 579 ~~~~~~~-----~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~----~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
.+..... .....+.++|++++++++. .++.|.+|++.... .+...... .....+.++|+|++|+++.
T Consensus 216 ~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~---~~p~~~~~~~dg~~l~va~ 292 (330)
T PRK11028 216 TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTE---TQPRGFNIDHSGKYLIAAG 292 (330)
T ss_pred EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEecc---ccCCceEECCCCCEEEEEE
Confidence 3332111 1123488999999999985 47899999986432 22222221 1346899999999999887
Q ss_pred c-CCcEEEEEccc
Q 001319 649 A-DNGFKILANAI 660 (1101)
Q Consensus 649 ~-d~~i~iwd~~~ 660 (1101)
. +++|.+|++..
T Consensus 293 ~~~~~v~v~~~~~ 305 (330)
T PRK11028 293 QKSHHISVYEIDG 305 (330)
T ss_pred ccCCcEEEEEEcC
Confidence 6 89999998753
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.6e-16 Score=154.63 Aligned_cols=282 Identities=14% Similarity=0.178 Sum_probs=190.0
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--C-CceE
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--G-HWCT 542 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~-~~v~ 542 (1101)
.++++-..|.|++|| .+|+.+..++++...++.+.|.....+..+.+++.||+|++||++.......+... . .+..
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~ 121 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFI 121 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcce
Confidence 577788899999999 88999999999999999999987555678999999999999999987765544332 2 3566
Q ss_pred EEEEccCCCEEEEeecCCCCCceEEEEeCCCCee-EEEecccCCcceEEEEEeCC-CCEEEEEeCCCcEEEEECCCCe--
Q 001319 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVN-- 618 (1101)
Q Consensus 543 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~-- 618 (1101)
+++..-.++.+++|..-.+.+-.|.+||.+..+. ++.+...+...|++++|+|. .+.|++|+.||.|.+||+....
T Consensus 122 ~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee 201 (376)
T KOG1188|consen 122 CLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE 201 (376)
T ss_pred EeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch
Confidence 7776667788888776555677899999998765 66665544558999999995 4788899999999999987542
Q ss_pred --eeEeeccCCCCCCCCeeEEecCC-CEEEEEEcCCcEEEEEccccccccccccCCCccc-ccCccee----e-eeeecc
Q 001319 619 --ILTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIGLRSLRAVENPPFEA-LRTPIES----V-ALKVSA 689 (1101)
Q Consensus 619 --~~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~v~~----~-~~s~~~ 689 (1101)
++.++. ....|.++.|..++ +.|.+-+...+..+|+++.+.. ...+....... ....... + ..+|.+
T Consensus 202 DaL~~viN---~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~-~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~ 277 (376)
T KOG1188|consen 202 DALLHVIN---HGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSE-ETWLENPDVSADDLRKEDNCDYVINEHSPGD 277 (376)
T ss_pred hhHHHhhc---ccceeeeeeeecCCcceEEEEEccCceeEEEccCCCh-hhcccCccchhhhHHhhhhhhheeecccCCC
Confidence 222332 23368899999877 4588888999999999998742 22222211100 0000000 0 111211
Q ss_pred cc-ccccCC-CCCcceeccCCCCCCceEEEEEEe---CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 690 SS-AVSSGT-PANCKVERSSPVRPSPIILAEIVD---SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 690 ~~-l~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
.. .+.+.+ .+.. .++.+.+ ......+.... .+|..-|.++.|...+..+++++.||.+.+|
T Consensus 278 ~~~~~l~g~~~n~~-------------~~~~~~~~~s~~~~~~~a~l~-g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 278 KDTCALAGTDSNKG-------------TIFPLVDTSSGSLLTEPAILQ-GGHEEIVRDILFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred cceEEEeccccCce-------------eEEEeeecccccccCcccccc-CCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence 11 111111 1111 1222221 11111111122 4466777888888899999999999999999
Q ss_pred Ee
Q 001319 765 KW 766 (1101)
Q Consensus 765 ~~ 766 (1101)
..
T Consensus 344 k~ 345 (376)
T KOG1188|consen 344 KV 345 (376)
T ss_pred ec
Confidence 74
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.5e-16 Score=149.71 Aligned_cols=206 Identities=21% Similarity=0.358 Sum_probs=158.3
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~ 420 (1101)
+.+.|.||.|.|++..+ |+ -.|..|.+|+++.+..+. ..+ ....-.+|+...++-+||| ||..
T Consensus 122 avg~i~cvew~Pns~kl-as-m~dn~i~l~~l~ess~~v-aev------------~ss~s~e~~~~ftsg~WspHHdgnq 186 (370)
T KOG1007|consen 122 AVGKINCVEWEPNSDKL-AS-MDDNNIVLWSLDESSKIV-AEV------------LSSESAEMRHSFTSGAWSPHHDGNQ 186 (370)
T ss_pred HhCceeeEEEcCCCCee-EE-eccCceEEEEcccCcchh-eee------------cccccccccceecccccCCCCccce
Confidence 55699999999999875 43 358999999999877632 111 1111233677889999999 8888
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~ 498 (1101)
+++. .|+++..||+.+.++...+ -..|...|..+.|+|+-++ +|++|++||.|+||| .+..++.++.+|...|+
T Consensus 187 v~tt-~d~tl~~~D~RT~~~~~sI--~dAHgq~vrdlDfNpnkq~-~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW 262 (370)
T KOG1007|consen 187 VATT-SDSTLQFWDLRTMKKNNSI--EDAHGQRVRDLDFNPNKQH-ILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVW 262 (370)
T ss_pred EEEe-CCCcEEEEEccchhhhcch--hhhhcceeeeccCCCCceE-EEEEcCCCccEEEEeccCCCccccccCCCceEEE
Confidence 8876 5789999999987765543 2478889999999999887 899999999999999 67778999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCC-----------------------------eeeeccCCCCceEEEEEccC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG-----------------------------SRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-----------------------------~~~~~~~~~~~v~~~~~s~d 549 (1101)
++.|+|..| ++|++++.|..|.+|....-. .+.++..|...|.+++||.-
T Consensus 263 ~VRfn~~hd-qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsa 341 (370)
T KOG1007|consen 263 AVRFNPEHD-QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSA 341 (370)
T ss_pred EEEecCccc-eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccC
Confidence 999999866 799999999999999643211 11245567778999999886
Q ss_pred CCEEEEeecCCCCCceEEEEeC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..++++.-. -||.+.|=.+
T Consensus 342 dPWiFASLS---YDGRviIs~V 360 (370)
T KOG1007|consen 342 DPWIFASLS---YDGRVIISSV 360 (370)
T ss_pred CCeeEEEec---cCceEEeecC
Confidence 666554322 2666665443
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-15 Score=151.70 Aligned_cols=299 Identities=15% Similarity=0.174 Sum_probs=218.1
Q ss_pred eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC------CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 533 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
.+..|.+.|.++.||.++++|++|+. +..+++|+++ +.+++.....|+...|.+++|.....++++|+.+
T Consensus 51 D~~~H~GCiNAlqFS~N~~~L~SGGD----D~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~ 126 (609)
T KOG4227|consen 51 DVREHTGCINALQFSHNDRFLASGGD----DMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERW 126 (609)
T ss_pred hhhhhccccceeeeccCCeEEeecCC----cceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCc
Confidence 45567888999999999999999986 8889999975 4567777766665689999999999999999999
Q ss_pred CcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeee
Q 001319 607 SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1101)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 686 (1101)
++|...|+++.+.+..+......+.|+.+..+|..+.+++.+.++.|.+||..........+..
T Consensus 127 ~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~---------------- 190 (609)
T KOG4227|consen 127 GTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLP---------------- 190 (609)
T ss_pred ceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeee----------------
Confidence 9999999999999988877666678999999999999999999999999998765221111100
Q ss_pred eccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccE-EEeecCCeEEEEE
Q 001319 687 VSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL-LALGSNGVQKLWK 765 (1101)
Q Consensus 687 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~v~~w~ 765 (1101)
.........+.|+|....| ++.+..+.+-+||
T Consensus 191 -----------------------------------------------AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D 223 (609)
T KOG4227|consen 191 -----------------------------------------------ANSGKNFYTAEFHPETPALILVNSETGGPNVFD 223 (609)
T ss_pred -----------------------------------------------cCCCccceeeeecCCCceeEEeccccCCCCcee
Confidence 0022334556777766544 4555568888998
Q ss_pred ecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCC-eEEEEECCCceEEEEeeCC
Q 001319 766 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGG-KISLFNMMTFKVMTTFMSP 844 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg-~i~vwd~~~~~~~~~~~~~ 844 (1101)
........... +.... ++ .....-..+.|+|+|..+.+-..+ .-.+||+-+..+...-..|
T Consensus 224 ~R~~~~~~~~~--------------~~~~~--L~--~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~ 285 (609)
T KOG4227|consen 224 RRMQARPVYQR--------------SMFKG--LP--QENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDH 285 (609)
T ss_pred eccccchHHhh--------------hcccc--Cc--ccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccC
Confidence 76432211100 00000 00 012334568899999988777644 4667787764443222222
Q ss_pred C-------CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-----------------------eEEEeeccCCCCeeEE
Q 001319 845 P-------PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-----------------------EVKSKLKGHQKRITGL 894 (1101)
Q Consensus 845 ~-------~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-----------------------~~~~~~~~h~~~V~~l 894 (1101)
. ..+.+++|.. | .-+++|+.+-.|++|.+... +.+..++||..-++.+
T Consensus 286 N~~GY~N~~T~KS~~F~~-D-~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQV 363 (609)
T KOG4227|consen 286 NPNGYCNIKTIKSMTFID-D-YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQV 363 (609)
T ss_pred CCCcceeeeeeeeeeeec-c-eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccce
Confidence 2 2477888875 4 45899999999999998631 2345789999999999
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECC
Q 001319 895 AFSTSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 895 ~~s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
.|+|...+|++.+....+++|.--
T Consensus 364 RF~~H~~~l~SSGVE~~~KlWS~~ 387 (609)
T KOG4227|consen 364 RFSQHNNLLVSSGVENSFKLWSDH 387 (609)
T ss_pred eecCCcceEeccchhhheeccccc
Confidence 999999999999999999999754
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3.1e-15 Score=139.68 Aligned_cols=280 Identities=17% Similarity=0.236 Sum_probs=189.6
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.|.+-++||.+++ |+.|..+|.|.+..+..-..-.. ......+--...+|+++|+.++|. .++|++|+
T Consensus 12 tvf~qa~sp~~~~-l~agn~~G~iav~sl~sl~s~sa---------~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g 79 (325)
T KOG0649|consen 12 TVFAQAISPSKQY-LFAGNLFGDIAVLSLKSLDSGSA---------EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG 79 (325)
T ss_pred HHHHHhhCCcceE-EEEecCCCeEEEEEehhhhcccc---------CCCCCcceeeccccCCCeeeeeee--hhheeecc
Confidence 5777889999995 58899999999999864211110 000111112357899999999998 45666665
Q ss_pred CCCeEEEEeecCCcc---ccccee--eeccc-----CcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 426 TKHLIQLYSYAGSND---LRQHSQ--IDAHV-----GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~---~~~~~~--l~~h~-----~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
||.|+-|....... .+...+ ...|. -.|+++-..|.... ++.++.|+.++-|| .+|+..++++||+
T Consensus 80 -dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enS--i~~AgGD~~~y~~dlE~G~i~r~~rGHt 156 (325)
T KOG0649|consen 80 -DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENS--ILFAGGDGVIYQVDLEDGRIQREYRGHT 156 (325)
T ss_pred -CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCCCc--EEEecCCeEEEEEEecCCEEEEEEcCCc
Confidence 59999998864332 111111 11222 35889999988773 55555799999999 9999999999999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC----------CCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----------~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
+.|.+++--.. + ..+++|++||++|+||.++.++...+..- +.+|.+++ -+..++++|+ ..
T Consensus 157 DYvH~vv~R~~-~-~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala--~~edWlvCGg-----Gp 227 (325)
T KOG0649|consen 157 DYVHSVVGRNA-N-GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALA--VNEDWLVCGG-----GP 227 (325)
T ss_pred ceeeeeeeccc-C-cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEe--ccCceEEecC-----CC
Confidence 99999986322 2 46889999999999999999887665432 22455555 4566888875 56
Q ss_pred eEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC-CE
Q 001319 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG-NL 643 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g-~~ 643 (1101)
.+.+|.++..++...|.-.. .+..+.|.. +.++++|+.+.|.-|.+. |.+....+...+ ......|+... ++
T Consensus 228 ~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~g~~v~~~~l~-Gvl~a~ip~~s~--~c~s~s~~~~p~k~ 300 (325)
T KOG0649|consen 228 KLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGEGNHVQSYTLN-GVLQANIPVEST--ACYSASWQTSPIKF 300 (325)
T ss_pred ceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEeccccceeeeeec-cEEEEeccCCcc--ceeeecccCCceEE
Confidence 79999999988888776432 355566654 578888888899999874 544444444332 34444444333 23
Q ss_pred EEEEEcCCcEEEE
Q 001319 644 LAVTTADNGFKIL 656 (1101)
Q Consensus 644 l~~~~~d~~i~iw 656 (1101)
+-.++....+.++
T Consensus 301 ~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 301 ISIAGFSNKLHIL 313 (325)
T ss_pred EEecccceeeeee
Confidence 4444445555554
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=6.4e-15 Score=146.74 Aligned_cols=242 Identities=11% Similarity=0.206 Sum_probs=188.0
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC--cEEEEEeecceE
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEV 880 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~v~iwd~~~~~~ 880 (1101)
....+..+.|..|...|..|+....++|+................|..+-|+. .++|..+.+. .+++++++.+..
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gyk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGYKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCceeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34456777799999999999966678888765544222222334567777865 5777776554 599999998888
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-E--eCC
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-V--HET 957 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~--~d~ 957 (1101)
+..+. ...+|.++.++. ++|+++=.+. |+|||+.+-+.+++...... .+..+.++.+++.+.+++. + +.|
T Consensus 81 ICe~~-fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~---n~~gl~AlS~n~~n~ylAyp~s~t~G 153 (391)
T KOG2110|consen 81 ICEIF-FPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPP---NPKGLCALSPNNANCYLAYPGSTTSG 153 (391)
T ss_pred EEEEe-cCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCC---CccceEeeccCCCCceEEecCCCCCc
Confidence 87765 457799999874 4566665554 99999999776655433211 1256777777778889998 3 378
Q ss_pred eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCceeEeeCCCCcCCCcccCCCCccc
Q 001319 958 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1036 (1101)
Q Consensus 958 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 1036 (1101)
.|.+||..+.+.+..+..| .+++-+++|++||.+|||+++.|+ |||+.+.+|..+..++. ...++.
T Consensus 154 dV~l~d~~nl~~v~~I~aH---~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRR----------G~~~~~ 220 (391)
T KOG2110|consen 154 DVVLFDTINLQPVNTINAH---KGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRR----------GTYPVS 220 (391)
T ss_pred eEEEEEcccceeeeEEEec---CCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeC----------CceeeE
Confidence 9999999999999998865 999999999999999999999887 79999999999999885 233556
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1037 PLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1037 ~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.+++|+| |+.+|++.|..++|.||.+++..
T Consensus 221 IySL~Fs~-ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 221 IYSLSFSP-DSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEECC-CCCeEEEecCCCeEEEEEecccc
Confidence 77999999 79999999999999999998866
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=149.65 Aligned_cols=283 Identities=17% Similarity=0.200 Sum_probs=195.8
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccc-cCCccEEEEEEccCCCE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~ 420 (1101)
+|.+.|+++.|-.+++ | .+|..-|.|++|++.+..... .+. .|...|+.+.--|+ ..
T Consensus 12 p~~~~v~s~~fqa~~r-L-~sg~~~G~V~~w~lqt~r~~~-------------------~~r~~g~~~it~lq~~p~-d~ 69 (323)
T KOG0322|consen 12 PHSSSVTSVLFQANER-L-MSGLSVGIVKMWVLQTERDLP-------------------LIRLFGRLFITNLQSIPN-DS 69 (323)
T ss_pred cccchheehhhccchh-h-hcccccceEEEEEeecCccch-------------------hhhhhccceeeceeecCC-cc
Confidence 6999999999999997 4 689999999999999876543 144 46789999999987 56
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCC-----Cce--EEEEecCCc-eEEEEE-cCCceeEEe-
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPN-----KLL--CVVTCGDDK-LIKVWE-LSGRKLFNF- 490 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~-----~~~--~l~s~~~d~-~v~iwd-~~~~~~~~~- 490 (1101)
|.+-+.|+.+.+|++..+..+. -|.-.++++.|++-. +.. .++.-++.. .+++-| -....+...
T Consensus 70 l~tqgRd~~L~lw~ia~s~~i~------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~d 143 (323)
T KOG0322|consen 70 LDTQGRDPLLILWTIAYSAFIS------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIAD 143 (323)
T ss_pred hhhcCCCceEEEEEccCcceEE------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhccCccceeEccC
Confidence 7788899999999998765332 455566666665531 100 111111000 011222 111111111
Q ss_pred ---ecCCcCeEEEecccCC-CccEEEEeccCCeEEEEecCCCCeee----------eccCCCCceEEEEEccCCCEEEEe
Q 001319 491 ---EGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRV----------DYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 491 ---~~h~~~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~----------~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
.+-.+.+.+..+.... ..-++++|-++|.+.+||+.++.... ....|..+|.++.+.+.-..=+++
T Consensus 144 d~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisg 223 (323)
T KOG0322|consen 144 DSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISG 223 (323)
T ss_pred chhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCC
Confidence 1233455555543322 22356788899999999999874443 334566789999998766555565
Q ss_pred ecCCCCCceEEEEeCCC--Cee-EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 557 GTSKDGDSFLVEWNESE--GTI-KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~--~~~-~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
+. +..+..|++.. +.+ ++.........+..+.+-||++.++++|-|+.|+||+.++..++..+..|.. .|+
T Consensus 224 ga----~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsa--gvn 297 (323)
T KOG0322|consen 224 GA----DDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSA--GVN 297 (323)
T ss_pred Cc----cccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhc--cee
Confidence 54 55677777653 322 2222222333577788999999999999999999999999999999988864 899
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
+++|+|+...+|.++.|+.|.+|++
T Consensus 298 ~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 298 AVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEEeCCCCchhhhccCCceEEeeec
Confidence 9999999999999999999999986
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=5.9e-16 Score=148.21 Aligned_cols=228 Identities=18% Similarity=0.208 Sum_probs=173.8
Q ss_pred CCeEEEEECCCce--E-EEEeeCCCCCeeEEEEecCCCCEEEEEeCC-------CcEEEEEeecc---------eEEEee
Q 001319 824 GGKISLFNMMTFK--V-MTTFMSPPPASTFLAFHPQDNNIIAIGTED-------STIHIYNVRVD---------EVKSKL 884 (1101)
Q Consensus 824 dg~i~vwd~~~~~--~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-------g~v~iwd~~~~---------~~~~~~ 884 (1101)
++.|.+.+++... . ...|..|.++|..++-+|.+.++|+++..+ ..+.||.+... +++..+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~L 118 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASL 118 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcC
Confidence 5677777665432 2 345667889999999999888899887753 24679988643 334455
Q ss_pred c-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc-cceEEeecCCCCCCCcceEEEcC--CCCEEEEEeCCeEE
Q 001319 885 K-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR-KSVTIHIPAGKTPTGDTRVQFNA--DQVRMLVVHETQLA 960 (1101)
Q Consensus 885 ~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~-~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~d~~i~ 960 (1101)
. .+-+.|.|+.|.|++..|++-. |..|.+|+++.+..+ .........++. ...++-+|+| ||..+++..|+++.
T Consensus 119 dteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~-~~ftsg~WspHHdgnqv~tt~d~tl~ 196 (370)
T KOG1007|consen 119 DTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMR-HSFTSGAWSPHHDGNQVATTSDSTLQ 196 (370)
T ss_pred CHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeeccccccccc-ceecccccCCCCccceEEEeCCCcEE
Confidence 4 5667999999999999999876 788999999987763 222222222222 5677888988 89999999999999
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCE-EEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEE
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQL-VFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1039 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~-l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 1039 (1101)
.||+.+.+....+.. .|...|..+.|.|+-++ |++++.||.|+|||.+.-+....-. -+|+| ++.+
T Consensus 197 ~~D~RT~~~~~sI~d--AHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el---------~~HsH--WvW~ 263 (370)
T KOG1007|consen 197 FWDLRTMKKNNSIED--AHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQEL---------PGHSH--WVWA 263 (370)
T ss_pred EEEccchhhhcchhh--hhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccccc---------CCCce--EEEE
Confidence 999999888776654 45888999999999874 7789999999999998654322211 12666 6679
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1040 VAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1040 l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
+.|.|..+.++++||.|..|.+|...+
T Consensus 264 VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 264 VRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EEecCccceEEEecCCCceeEEEeccc
Confidence 999998899999999999999998743
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=2.2e-15 Score=168.57 Aligned_cols=223 Identities=13% Similarity=0.161 Sum_probs=149.6
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+.+....-..+.|+|=...++++...-.|+|||.+.++.+..+..-......|+.+.+-.+...-++++|+.||.|+||+
T Consensus 1060 ~~~n~~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk 1139 (1387)
T KOG1517|consen 1060 MTGNNQPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWK 1139 (1387)
T ss_pred HhcCCCCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEec
Confidence 44555567788999999999999877889999999998776443323345579999997765544899999999999999
Q ss_pred --cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 482 --~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
.++.....+ |+ +|.+-.+ .+-+...-|.+.=| -....+|+++|.
T Consensus 1140 ~y~~~~~~~eL------VT--aw~~Ls~--~~~~~r~~~~v~dW-----------------------qQ~~G~Ll~tGd- 1185 (1387)
T KOG1517|consen 1140 DYADKWKKPEL------VT--AWSSLSD--QLPGARGTGLVVDW-----------------------QQQSGHLLVTGD- 1185 (1387)
T ss_pred ccccccCCcee------EE--eeccccc--cCccCCCCCeeeeh-----------------------hhhCCeEEecCC-
Confidence 443111111 11 1111111 11111112223223 233334444432
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCe---eeEeeccCCCCCCCCee
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVN---ILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~---~~~~~~~~~~~~~v~~v 635 (1101)
-..|+|||.........+.......++++.-+- .|+.+++|..||.|++||.+... .+.....|....+|..+
T Consensus 1186 ---~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~ 1262 (1387)
T KOG1517|consen 1186 ---VRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHL 1262 (1387)
T ss_pred ---eeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeE
Confidence 567899998888877777766665666655443 46899999999999999987643 35555555554558899
Q ss_pred EEecCCCE-EEEEEcCCcEEEEEcccc
Q 001319 636 RFSKEGNL-LAVTTADNGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~-l~~~~~d~~i~iwd~~~~ 661 (1101)
.+.+.|-. |++|+.+|.|++||++..
T Consensus 1263 slq~~G~~elvSgs~~G~I~~~DlR~~ 1289 (1387)
T KOG1517|consen 1263 SLQRQGLGELVSGSQDGDIQLLDLRMS 1289 (1387)
T ss_pred EeecCCCcceeeeccCCeEEEEecccC
Confidence 99887654 999999999999998753
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=4.9e-15 Score=142.24 Aligned_cols=285 Identities=14% Similarity=0.269 Sum_probs=202.7
Q ss_pred ecCCCcEEEEEEe--cCCceEEEEEec----cCcEEEEecC--CCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 341 LHQGSTVISMDFH--PSHQTLLLVGSS----NGEITLWELA--MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 341 ~~h~~~V~~v~fs--pdg~~llasg~~----d~~i~iwd~~--~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
....-.+.+++|| |+.++.+|.|+. .+.|.|-.++ +++.+.. --..|..+++.+
T Consensus 41 Y~ap~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~------------------a~fd~~YP~tK~ 102 (364)
T KOG0290|consen 41 YNAPWPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVED------------------ANFDHPYPVTKL 102 (364)
T ss_pred ecCCCceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceecc------------------CCCCCCCCccce
Confidence 3345578999998 566667788864 4566666554 2333221 124588999999
Q ss_pred EEccCCC-----EEEEEECCCeEEEEeecCCcc-cccce-----eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 413 AWSPDGN-----YVGVAFTKHLIQLYSYAGSND-LRQHS-----QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 413 ~~spdg~-----~las~~~d~~i~vwd~~~~~~-~~~~~-----~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
-|.||.+ +||+++ ..+|+|.+...+. +.... .-..+..++++..|+.-..+ ++.+++-|.+..|||
T Consensus 103 ~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~-~igtSSiDTTCTiWd 179 (364)
T KOG0290|consen 103 MWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPN-LIGTSSIDTTCTIWD 179 (364)
T ss_pred EecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcc-eeEeecccCeEEEEE
Confidence 9999873 566553 3599999974221 11111 12356679999999986665 899999999999999
Q ss_pred -cCCc---eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee-eccCC--CCceEEEEEccC-CCEE
Q 001319 482 -LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAP--GHWCTTMLYSAD-GSRL 553 (1101)
Q Consensus 482 -~~~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~--~~~v~~~~~s~d-~~~l 553 (1101)
.+|. ....+-.|..+|..|+|... ..+.+++.+.||.+|++|++..+.-. .+..+ ..+...++|++. -+++
T Consensus 180 ie~~~~~~vkTQLIAHDKEV~DIaf~~~-s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnym 258 (364)
T KOG0290|consen 180 IETGVSGTVKTQLIAHDKEVYDIAFLKG-SRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYM 258 (364)
T ss_pred EeeccccceeeEEEecCcceeEEEeccC-ccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHH
Confidence 6552 35678889999999999863 45789999999999999998765433 22222 346778888874 4567
Q ss_pred EEeecCCCCCceEEEEeCCCC-eeEEEecccCCcceEEEEEeCC-CCEEEEEeCCCcEEEEECCCCee------eEeecc
Q 001319 554 FSCGTSKDGDSFLVEWNESEG-TIKRTYAGFRKKSNGVVQFDTT-QNHFLAVGEDSQIKFWDMDNVNI------LTSTDA 625 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~-~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~~dg~i~iwd~~~~~~------~~~~~~ 625 (1101)
|+... ....|.+.|++.. .++..+++|.. .|+.++|.|. ..++.++|.|..+.+||+...-. +..+.
T Consensus 259 ATf~~---dS~~V~iLDiR~P~tpva~L~~H~a-~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~- 333 (364)
T KOG0290|consen 259 ATFAM---DSNKVVILDIRVPCTPVARLRNHQA-SVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT- 333 (364)
T ss_pred hhhhc---CCceEEEEEecCCCcceehhhcCcc-cccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh-
Confidence 76654 3567999999864 57788899887 8999999995 46888899999999999976322 22222
Q ss_pred CCCCCCCCeeEEec-CCCEEEEEEcCCcEEE
Q 001319 626 EGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1101)
Q Consensus 626 ~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~i 655 (1101)
....|+.+.|++ .+..++++.. +.+.+
T Consensus 334 --a~~EVNqi~Ws~~~~Dwiai~~~-kklei 361 (364)
T KOG0290|consen 334 --AGGEVNQIQWSSSQPDWIAICFG-KKLEI 361 (364)
T ss_pred --ccceeeeeeecccCCCEEEEEec-CeeeE
Confidence 233789999997 5667777664 34443
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.2e-15 Score=167.18 Aligned_cols=304 Identities=16% Similarity=0.224 Sum_probs=211.6
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-CCCCCCeeEEec--CCCEEEEEEcCCcEEEEEcccccc
Q 001319 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSK--EGNLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
....+.|+|-...++++.+.-.|+|||.+.++.+..+.... ....|..+.+-. |..++.+++.||.|+||+-.....
T Consensus 1066 ~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~ 1145 (1387)
T KOG1517|consen 1066 PPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKW 1145 (1387)
T ss_pred CCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEeccccccc
Confidence 45568899988999999988899999999999988775432 224577777654 567899999999999997432210
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEE
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRL 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 743 (1101)
.. .+ + | -
T Consensus 1146 -----~~--~e-----------------L-----------------------------------------------V--T 1152 (1387)
T KOG1517|consen 1146 -----KK--PE-----------------L-----------------------------------------------V--T 1152 (1387)
T ss_pred -----CC--ce-----------------e-----------------------------------------------E--E
Confidence 00 00 0 0 0
Q ss_pred EeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-CCCeEEEE
Q 001319 744 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSA 822 (1101)
Q Consensus 744 ~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~ 822 (1101)
+|++-...+.+....| .-+.|.. .|.++++|
T Consensus 1153 aw~~Ls~~~~~~r~~~------------------------------------------------~v~dWqQ~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1153 AWSSLSDQLPGARGTG------------------------------------------------LVVDWQQQSGHLLVTG 1184 (1387)
T ss_pred eeccccccCccCCCCC------------------------------------------------eeeehhhhCCeEEecC
Confidence 0000000011111111 1223333 35555555
Q ss_pred cCCeEEEEECCCceEEEEeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc---eEEEeeccCCCC--eeEEEE
Q 001319 823 TGGKISLFNMMTFKVMTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD---EVKSKLKGHQKR--ITGLAF 896 (1101)
Q Consensus 823 ~dg~i~vwd~~~~~~~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~---~~~~~~~~h~~~--V~~l~~ 896 (1101)
.-..|+|||...-.....+.. ....|+++.-+-..|..+++|..||.|++||.... ..+...+.|+.. |..+.+
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 557799999988777776653 34557887766656799999999999999998754 356777889888 999999
Q ss_pred cCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEecc
Q 001319 897 STSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTP 975 (1101)
Q Consensus 897 s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 975 (1101)
-+.|- .|++|+.||.|++||+..........+...... .+..+++..+++...+|+|+.+.|.||++...+ +..+..
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~y-Gs~lTal~VH~hapiiAsGs~q~ikIy~~~G~~-l~~~k~ 1342 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEY-GSALTALTVHEHAPIIASGSAQLIKIYSLSGEQ-LNIIKY 1342 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCcccccceeeecccc-CccceeeeeccCCCeeeecCcceEEEEecChhh-hccccc
Confidence 88765 599999999999999998543333333222211 135899999999999999888999999987433 333322
Q ss_pred CCC----CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 976 QDA----LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 976 ~~~----h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
..+ ..+.+.|++|.|---+||+|+.|.+|.||......
T Consensus 1343 n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1343 NPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred CcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 211 15678999999999999999999999999877654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=2.6e-15 Score=170.41 Aligned_cols=235 Identities=12% Similarity=0.114 Sum_probs=164.1
Q ss_pred cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccc
Q 001319 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLR 442 (1101)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~ 442 (1101)
+..|.|||.+..... .+..|...+.+.+|||||++||.++.+ ..|++||+.+++...
T Consensus 183 ~~~i~i~d~dg~~~~--------------------~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~ 242 (429)
T PRK01742 183 PYEVRVADYDGFNQF--------------------IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKV 242 (429)
T ss_pred eEEEEEECCCCCCce--------------------EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEE
Confidence 468999998765421 256678899999999999999988653 469999999875422
Q ss_pred cceeeecccCcEEEEEEecCCCceEEEE-ecCCceEEEE--EcCCceeEEeecCCcCeEEEecccCCCccEEEE-eccCC
Q 001319 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVT-CGDDKLIKVW--ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFS-TAIDG 518 (1101)
Q Consensus 443 ~~~~l~~h~~~V~~l~~s~d~~~~~l~s-~~~d~~v~iw--d~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s-~~~d~ 518 (1101)
+..+.+| ...++|+|||+. |+. .+.+|.+.|| |..+..+..+..+...+....|+| ||+.|+. +..++
T Consensus 243 -l~~~~g~---~~~~~wSPDG~~--La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~i~f~s~~~g 314 (429)
T PRK01742 243 -VASFRGH---NGAPAFSPDGSR--LAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSP--DGQSILFTSDRSG 314 (429)
T ss_pred -EecCCCc---cCceeECCCCCE--EEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECC--CCCEEEEEECCCC
Confidence 1123343 446899999994 544 4567876665 555555677777777788899987 5666554 44678
Q ss_pred eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC
Q 001319 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1101)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1101)
..++|+++..........+.. ....|+|||++++..+. + .+.+||+.+++........ ....+.|+|+|+
T Consensus 315 ~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~----~-~i~~~Dl~~g~~~~lt~~~---~~~~~~~sPdG~ 384 (429)
T PRK01742 315 SPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMING----D-NVVKQDLTSGSTEVLSSTF---LDESPSISPNGI 384 (429)
T ss_pred CceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcC----C-CEEEEECCCCCeEEecCCC---CCCCceECCCCC
Confidence 889998765433222222222 45789999999988763 3 4667999988765433332 234577999999
Q ss_pred EEEEEeCCCcEEEEEC--CCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 599 HFLAVGEDSQIKFWDM--DNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 599 ~l~~~~~dg~i~iwd~--~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
+|+.++.++.+.+|++ .+++....+..+.+ .+...+|+|-
T Consensus 385 ~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g--~~~~p~wsp~ 426 (429)
T PRK01742 385 MIIYSSTQGLGKVLQLVSADGRFKARLPGSDG--QVKFPAWSPY 426 (429)
T ss_pred EEEEEEcCCCceEEEEEECCCCceEEccCCCC--CCCCcccCCC
Confidence 9999998998888875 35777777764433 5788899884
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.69 E-value=5.8e-15 Score=164.41 Aligned_cols=269 Identities=15% Similarity=0.202 Sum_probs=202.0
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+|++++. ......+.-..+|+|++|+|....++|.|..+|.|.+||+..+....... .......|.
T Consensus 226 vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~-------------ls~~~~sh~ 291 (555)
T KOG1587|consen 226 VWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSG-------------LSALEVSHS 291 (555)
T ss_pred EEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcc-------------cccccccCC
Confidence 8888877 66777778889999999999998899999999999999998876532100 111255699
Q ss_pred ccEEEEEEccCCCE--EEEEECCCeEEEEeecCCcccccceeee---------cccCcEEEEEEecCCCceEEEEecCCc
Q 001319 407 ISVSRVAWSPDGNY--VGVAFTKHLIQLYSYAGSNDLRQHSQID---------AHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 407 ~~v~~~~~spdg~~--las~~~d~~i~vwd~~~~~~~~~~~~l~---------~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
.+|+.+.|-.+-.- +++++.||.|..|+++.-........+. .-...+++++|.+...+ .++.|+++|
T Consensus 292 ~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~-~FiVGTe~G 370 (555)
T KOG1587|consen 292 EPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPN-HFIVGTEEG 370 (555)
T ss_pred cCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCc-eEEEEcCCc
Confidence 99999999886554 9999999999999887543311111111 12336899999998776 789999999
Q ss_pred eEEEEE---cCCce------eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC-CCCeeeeccCCCCceEEEE
Q 001319 476 LIKVWE---LSGRK------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPGHWCTTML 545 (1101)
Q Consensus 476 ~v~iwd---~~~~~------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~ 545 (1101)
.|.-=+ .+... +..+..|.++|.++.++|-.. ..+++++ |-++++|.-. .......+..+...+++++
T Consensus 371 ~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~-k~fls~g-DW~vriWs~~~~~~Pl~~~~~~~~~v~~va 448 (555)
T KOG1587|consen 371 KVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYP-KNFLSVG-DWTVRIWSEDVIASPLLSLDSSPDYVTDVA 448 (555)
T ss_pred EEEEEeccCCcccccccccccccccccCcceEeeecCCCcc-ceeeeec-cceeEeccccCCCCcchhhhhccceeeeeE
Confidence 988733 22222 345667899999999887543 3444555 9999999877 6666777777777899999
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCC--eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
|||-.-.++.+.. ++|.|.+||+... .++.+..-. ......+.|++.|+.+++|...|.+.+|++..
T Consensus 449 WSptrpavF~~~d---~~G~l~iWDLl~~~~~Pv~s~~~~-~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 449 WSPTRPAVFATVD---GDGNLDIWDLLQDDEEPVLSQKVC-SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred EcCcCceEEEEEc---CCCceehhhhhccccCCccccccc-ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 9998877776653 6999999998643 344444333 33567788999999999999999999999864
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=147.94 Aligned_cols=274 Identities=12% Similarity=0.162 Sum_probs=190.9
Q ss_pred EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CCCEEEEEECCCeEEEEeec
Q 001319 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYA 436 (1101)
Q Consensus 359 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg~~las~~~d~~i~vwd~~ 436 (1101)
.+|++-..|.|+|||..+++.+.. +++|...+..++|.. ....+.+|+.||+|++||+.
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~-------------------fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~R 102 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEE-------------------FKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIR 102 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhhe-------------------ecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEee
Confidence 568888999999999999887653 788888999999987 46778899999999999999
Q ss_pred CCcccccceeeeccc-CcEEEEEEecCCCceEEEEec----CCceEEEEE-cCCce-eEEe-ecCCcCeEEEecccCCCc
Q 001319 437 GSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG----DDKLIKVWE-LSGRK-LFNF-EGHEAPVYSICPHHKENI 508 (1101)
Q Consensus 437 ~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~----~d~~v~iwd-~~~~~-~~~~-~~h~~~v~~v~~~~~~~~ 508 (1101)
+.....++ .+.+|. .+..+++-.-.++ +++.|. .|-.|.+|| ...+. +..+ ..|...|++++|+|+. .
T Consensus 103 s~~e~a~~-~~~~~~~~~f~~ld~nck~~--ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~-p 178 (376)
T KOG1188|consen 103 SQAESARI-SWTQQSGTPFICLDLNCKKN--IIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSD-P 178 (376)
T ss_pred cchhhhhe-eccCCCCCcceEeeccCcCC--eEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCC-C
Confidence 87655443 345565 4667777665566 566664 356799999 44433 5444 5799999999999984 5
Q ss_pred cEEEEeccCCeEEEEecCCCCee---eeccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEEEeCCCCeeEEEecccC
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1101)
++|++|+.||-|.++|+...... ....-++..|.++.|..++ +.+.+.+. .....+|+++.+.....+....
T Consensus 179 nlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH----~Etf~~~ele~~~~~~~~~~~~ 254 (376)
T KOG1188|consen 179 NLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTH----METFAIYELEDGSEETWLENPD 254 (376)
T ss_pred CeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecCCcceEEEEEc----cCceeEEEccCCChhhcccCcc
Confidence 79999999999999998765332 2233355578999999887 33544443 7789999999887655544321
Q ss_pred C---------cceEEE-EEeC-CCCEEEEEeC-CCcEEEEECC---CCee---eEeeccCCCCCCCCeeEEecCCCEEEE
Q 001319 585 K---------KSNGVV-QFDT-TQNHFLAVGE-DSQIKFWDMD---NVNI---LTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 585 ~---------~~v~~~-~~~~-~~~~l~~~~~-dg~i~iwd~~---~~~~---~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1101)
- ..-+.+ +.+| ++..++.++. -++..++-+. ++.. +..+.+ ++..-|+++.|...+.++.+
T Consensus 255 ~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g-~~~eiVR~i~~~~~~~~l~T 333 (376)
T KOG1188|consen 255 VSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG-GHEEIVRDILFDVKNDVLYT 333 (376)
T ss_pred chhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC-CcHHHHHHHhhhcccceeec
Confidence 0 000111 2223 3344555443 5555555443 2322 223332 23446788889888999999
Q ss_pred EEcCCcEEEEEccc
Q 001319 647 TTADNGFKILANAI 660 (1101)
Q Consensus 647 ~~~d~~i~iwd~~~ 660 (1101)
|+.||.+.+|....
T Consensus 334 GGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 334 GGEDGLLQAWKVED 347 (376)
T ss_pred cCCCceEEEEecCC
Confidence 99999999998643
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-14 Score=138.91 Aligned_cols=241 Identities=10% Similarity=0.108 Sum_probs=185.0
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
...+..+.|..|...|..|+.|| -++|+.+.-.... ........|-.+-|+.. .+.+++...-+.+++.+ ..+
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~---~~~~~~~~IvEmLFSSS--LvaiV~~~qpr~Lkv~~~Kk~ 78 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCF---SKDTEGVSIVEMLFSSS--LVAIVSIKQPRKLKVVHFKKK 78 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhh---cccCCCeEEEEeecccc--eeEEEecCCCceEEEEEcccC
Confidence 34677788999999999999999 7888887644311 11122334555666543 22344443334689999 666
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC---CCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---GHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
..+..+. ...+|.+|.++. +.|+++-.+. |.|||+++.+...++... ...+.++++++.+.+++.-+. .
T Consensus 79 ~~ICe~~-fpt~IL~VrmNr----~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s--~ 150 (391)
T KOG2110|consen 79 TTICEIF-FPTSILAVRMNR----KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGS--T 150 (391)
T ss_pred ceEEEEe-cCCceEEEEEcc----ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCC--C
Confidence 6676665 455799998854 4676666554 999999999988776554 334667777777779987643 2
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCc-EEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
..|.|.+||..+-+.+..+..|.+ .+.+++|+++|..++++++.|+ |||+.+.+|+.+..+........|.+++|+|+
T Consensus 151 t~GdV~l~d~~nl~~v~~I~aH~~-~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~d 229 (391)
T KOG2110|consen 151 TSGDVVLFDTINLQPVNTINAHKG-PLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPD 229 (391)
T ss_pred CCceEEEEEcccceeeeEEEecCC-ceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCC
Confidence 377899999999999999999887 8999999999999999999887 79999999999999876555567899999999
Q ss_pred CCEEEEEEcCCcEEEEEcccc
Q 001319 641 GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.+|++.+..++|+++.+...
T Consensus 230 s~~L~~sS~TeTVHiFKL~~~ 250 (391)
T KOG2110|consen 230 SQFLAASSNTETVHIFKLEKV 250 (391)
T ss_pred CCeEEEecCCCeEEEEEeccc
Confidence 999999999999999998755
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.8e-16 Score=172.51 Aligned_cols=289 Identities=13% Similarity=0.205 Sum_probs=226.4
Q ss_pred eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcE
Q 001319 530 SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 530 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1101)
.+..+.+|...|.|+.|...|.++++++. +..++||..+++.+.....||.+ .++.++.+.+..++++++.|..|
T Consensus 182 ~ikrLlgH~naVyca~fDrtg~~Iitgsd----d~lvKiwS~et~~~lAs~rGhs~-ditdlavs~~n~~iaaaS~D~vI 256 (1113)
T KOG0644|consen 182 NIKRLLGHRNAVYCAIFDRTGRYIITGSD----DRLVKIWSMETARCLASCRGHSG-DITDLAVSSNNTMIAAASNDKVI 256 (1113)
T ss_pred HHHHHHhhhhheeeeeeccccceEeecCc----cceeeeeeccchhhhccCCCCcc-ccchhccchhhhhhhhcccCceE
Confidence 33456678888999999999999999986 88999999999999999999988 89999999888899999999999
Q ss_pred EEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecc
Q 001319 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 689 (1101)
++|.+..+.++..+.++.+ .|++++|+|-. +.+.||++++||..-. .......+..
T Consensus 257 rvWrl~~~~pvsvLrghtg--avtaiafsP~~----sss~dgt~~~wd~r~~---~~~y~prp~~--------------- 312 (1113)
T KOG0644|consen 257 RVWRLPDGAPVSVLRGHTG--AVTAIAFSPRA----SSSDDGTCRIWDARLE---PRIYVPRPLK--------------- 312 (1113)
T ss_pred EEEecCCCchHHHHhcccc--ceeeeccCccc----cCCCCCceEecccccc---ccccCCCCCC---------------
Confidence 9999999999999987755 89999999965 7788999999998611 0111000000
Q ss_pred ccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCC
Q 001319 690 SSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 769 (1101)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~ 769 (1101)
......+.++.|...+..+.+++.++....|.+...
T Consensus 313 --------------------------------------------~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l 348 (1113)
T KOG0644|consen 313 --------------------------------------------FTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQL 348 (1113)
T ss_pred --------------------------------------------cccccceeeeeccccccccccccCCcccccchhhHh
Confidence 112345667788888999999999998888865421
Q ss_pred CCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC-CeEEEEc-CCeEEEEECCCceEEEEeeCCCCC
Q 001319 770 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA 847 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg-~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~ 847 (1101)
.| +...+.-+..+.|- .+.+++- +-.+.+|++.+|...+.+.+|...
T Consensus 349 ---------------~~----------------~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~ 397 (1113)
T KOG0644|consen 349 ---------------AW----------------RSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDE 397 (1113)
T ss_pred ---------------hh----------------hccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccc
Confidence 11 12222222223232 2444444 677999999999999999999999
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 922 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~ 922 (1101)
+..+.++|.+..+..+++.||...|||+..|..++...--.+.+..-+||+||..++....-|.+.|.....++.
T Consensus 398 ~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~s 472 (1113)
T KOG0644|consen 398 VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALSDDHGQLYILGTGQSKS 472 (1113)
T ss_pred eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecCCCCCceEEeccCCCcc
Confidence 999999998888888999999999999999977765533346677889999999999888889999988765543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.4e-15 Score=152.91 Aligned_cols=199 Identities=14% Similarity=0.209 Sum_probs=161.5
Q ss_pred eEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc
Q 001319 808 PCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
.+++|+.||..++++. ||++|+|+..+...+.....|..+|.++.|+| |+++|++.+.| ..+||++.++..+.....
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~-dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSP-DGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCC-CCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 7899999999999998 99999999988888888889999999999999 99999999999 899999999977665542
Q ss_pred --CCCCeeEEEEcCCC-----CEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCe
Q 001319 887 --HQKRITGLAFSTSL-----NILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQ 958 (1101)
Q Consensus 887 --h~~~V~~l~~s~d~-----~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~ 958 (1101)
-......+.|+.|+ ..++....-+.|+.|++..+..-......... .....++++++|+||++++.|. ||.
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~-~~~~siSsl~VS~dGkf~AlGT~dGs 304 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKI-KRFKSISSLAVSDDGKFLALGTMDGS 304 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhh-hccCcceeEEEcCCCcEEEEeccCCc
Confidence 23346778888887 34444555677888888765542111111111 1116899999999999999976 999
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
|-|++..+.+.+...+. .|..-|+.+.|+||.+++++-+.|..++|..+.-
T Consensus 305 Vai~~~~~lq~~~~vk~--aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 305 VAIYDAKSLQRLQYVKE--AHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred EEEEEeceeeeeEeehh--hheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 99999999988877664 4588999999999999999999999999988765
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.5e-13 Score=149.90 Aligned_cols=332 Identities=13% Similarity=0.141 Sum_probs=207.5
Q ss_pred ceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEE
Q 001319 465 LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (1101)
Q Consensus 465 ~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 543 (1101)
++++++-..++.|.+.| .+.+.+.++.........+.+++ ||+++++++.||.|.++|+.+.+...++.... ...+
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~--Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~-~~~~ 82 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSP--DGRYLYVANRDGTVSVIDLATGKVVATIKVGG-NPRG 82 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT---SSEEEEEETTSEEEEEETTSSSEEEEEE-SS-EEEE
T ss_pred cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecC--CCCEEEEEcCCCeEEEEECCcccEEEEEecCC-Ccce
Confidence 34567778899999999 88899999986554444566655 77899999999999999999999887776544 5788
Q ss_pred EEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC------CcceEEEEEeCCCCEEEEEe-CCCcEEEEECCC
Q 001319 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDN 616 (1101)
Q Consensus 544 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~ 616 (1101)
+++|+||++++++.. ..+.+.++|.++.+.++.+.... ...+..+..+|....++..- +.+.|.+.|...
T Consensus 83 i~~s~DG~~~~v~n~---~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d 159 (369)
T PF02239_consen 83 IAVSPDGKYVYVANY---EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSD 159 (369)
T ss_dssp EEE--TTTEEEEEEE---ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTT
T ss_pred EEEcCCCCEEEEEec---CCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecc
Confidence 999999999998765 47899999999999998876432 22455677778877565554 558888888776
Q ss_pred CeeeE--eeccCCCCCCCCeeEEecCCCEEEEE-EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccccc
Q 001319 617 VNILT--STDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1101)
Q Consensus 617 ~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 693 (1101)
.+.+. .+... .......|+|++++++++ ...+.|.++|..++.. ...+.. |+
T Consensus 160 ~~~~~~~~i~~g---~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~-v~~i~~------------------g~--- 214 (369)
T PF02239_consen 160 PKNLKVTTIKVG---RFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKL-VALIDT------------------GK--- 214 (369)
T ss_dssp SSCEEEEEEE-----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEE-EEEEE-------------------SS---
T ss_pred ccccceeeeccc---ccccccccCcccceeeecccccceeEEEeeccceE-EEEeec------------------cc---
Confidence 54433 23221 145789999999988775 4467888888765521 111000 00
Q ss_pred ccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC
Q 001319 694 SSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 773 (1101)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~ 773 (1101)
..|......+ .+|..
T Consensus 215 ----------------------------------------~p~~~~~~~~-php~~------------------------ 229 (369)
T PF02239_consen 215 ----------------------------------------KPHPGPGANF-PHPGF------------------------ 229 (369)
T ss_dssp ----------------------------------------SBEETTEEEE-EETTT------------------------
T ss_pred ----------------------------------------cccccccccc-cCCCc------------------------
Confidence 0011111111 11111
Q ss_pred CCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEE-EEcCCeEEEEECCCceEEEEeeCCCCCeeEEE
Q 001319 774 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM-SATGGKISLFNMMTFKVMTTFMSPPPASTFLA 852 (1101)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la-~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 852 (1101)
++++. .+..+...+ ..+.+.+.+||..+++.+.++.....+ ..+.
T Consensus 230 -------------------------------g~vw~--~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~ 275 (369)
T PF02239_consen 230 -------------------------------GPVWA--TSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIK 275 (369)
T ss_dssp -------------------------------EEEEE--EEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE
T ss_pred -------------------------------ceEEe--eccccceecccccCCccccchhhcCeEEEEEECCCCc-ceee
Confidence 11111 112233322 223455668999999999999987666 7888
Q ss_pred EecCCCCEEEEE----eCCCcEEEEEeecceEEEeeccCC-CCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCccccc
Q 001319 853 FHPQDNNIIAIG----TEDSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKS 925 (1101)
Q Consensus 853 ~s~~~~~~la~g----~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~s~s~D--g~v~lwd~~~~~~~~~ 925 (1101)
.+| +++++.+. ...++|.++|..+.+.+..+.... ..+..+.|++||+++..+..+ +.|.+||..+.+.+..
T Consensus 276 thP-~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~ 354 (369)
T PF02239_consen 276 THP-DSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKR 354 (369)
T ss_dssp --T-T-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEE
T ss_pred cCC-CCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEE
Confidence 899 89999887 455899999999998887775332 358999999999976655544 3699999999887665
Q ss_pred eE
Q 001319 926 VT 927 (1101)
Q Consensus 926 ~~ 927 (1101)
..
T Consensus 355 i~ 356 (369)
T PF02239_consen 355 IP 356 (369)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-16 Score=175.02 Aligned_cols=216 Identities=15% Similarity=0.223 Sum_probs=162.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc-eEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-LIKVW 480 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~-~v~iw 480 (1101)
+..|+...+|++||-+.+.|++|+..|.|++|++.+|.... ...+|..+|+-+.=+.||.. .|.+++... ...+|
T Consensus 1097 frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~---s~ncH~SavT~vePs~dgs~-~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEE---SVNCHQSAVTLVEPSVDGST-QLTSSSSSSPLSALW 1172 (1516)
T ss_pred hhccccceeeEEeecCCceEEeeeccceEEEEEccCccccc---cccccccccccccccCCcce-eeeeccccCchHHHh
Confidence 67788999999999999999999999999999999998776 57899999999999999995 333333333 67899
Q ss_pred E--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC----CCceEEEEEccCCCEEE
Q 001319 481 E--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP----GHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 481 d--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~----~~~v~~~~~s~d~~~l~ 554 (1101)
+ ..+...++|.+ -.++.|+... +.-+.|.......+||+.+.....++-.. ...-++..|+|+..+++
T Consensus 1173 ~~~s~~~~~Hsf~e----d~~vkFsn~~--q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl 1246 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDE----DKAVKFSNSL--QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL 1246 (1516)
T ss_pred ccccccCccccccc----cceeehhhhH--HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe
Confidence 9 56666666654 3456665432 23344555567889999998776653222 11346788999999887
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
- +|. +||.+..+.++.|..... ...-.|+|.|..++.-++ |||+++.+.++..+.-.. ..
T Consensus 1247 n-------dGv--LWDvR~~~aIh~FD~ft~--~~~G~FHP~g~eVIINSE-----IwD~RTF~lLh~VP~Ldq----c~ 1306 (1516)
T KOG1832|consen 1247 N-------DGV--LWDVRIPEAIHRFDQFTD--YGGGGFHPSGNEVIINSE-----IWDMRTFKLLHSVPSLDQ----CA 1306 (1516)
T ss_pred e-------Cce--eeeeccHHHHhhhhhhee--cccccccCCCceEEeech-----hhhhHHHHHHhcCccccc----eE
Confidence 6 444 599999888888776542 222469999999999887 999999998888765443 67
Q ss_pred eEEecCCCEEEEE
Q 001319 635 LRFSKEGNLLAVT 647 (1101)
Q Consensus 635 v~~s~~g~~l~~~ 647 (1101)
+.|+..|..++..
T Consensus 1307 VtFNstG~VmYa~ 1319 (1516)
T KOG1832|consen 1307 VTFNSTGDVMYAM 1319 (1516)
T ss_pred EEeccCccchhhh
Confidence 8898888776543
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.1e-12 Score=148.50 Aligned_cols=174 Identities=19% Similarity=0.262 Sum_probs=136.9
Q ss_pred ccccCCCCcceeEeecCCCc-----EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGST-----VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~-----V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 401 (1101)
+|..+.....+...+.+.+. ..-+-++++.-| +++|+.-+.|.+|+.. ..... ..
T Consensus 111 ~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~-i~~gsv~~~iivW~~~-~dn~p------------------~~ 170 (967)
T KOG0974|consen 111 LLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELY-IASGSVFGEIIVWKPH-EDNKP------------------IR 170 (967)
T ss_pred EEEEecccCceehhcCCCceEEEEeEEEEeccCcEEE-EEeccccccEEEEecc-ccCCc------------------ce
Confidence 33444444444444444432 233445666554 5899999999999987 22211 13
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+.||++.|.++.||-||+++|+.|.|.++++|++++++.... ..-+|+.+|+.+.|.|. .++|++.|.+.++|+
T Consensus 171 l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~--~~fgHsaRvw~~~~~~n----~i~t~gedctcrvW~ 244 (967)
T KOG0974|consen 171 LKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC--TGFGHSARVWACCFLPN----RIITVGEDCTCRVWG 244 (967)
T ss_pred ecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc--ccccccceeEEEEeccc----eeEEeccceEEEEEe
Confidence 889999999999999999999999999999999999887662 45699999999999988 499999999999999
Q ss_pred cCCceeEEeecCCc-CeEEEecccCCCccEEEEeccCCeEEEEecCCC
Q 001319 482 LSGRKLFNFEGHEA-PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~-~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 528 (1101)
.++..+..+.+|.+ .|..++..+ +...+++++.|+.+++|++...
T Consensus 245 ~~~~~l~~y~~h~g~~iw~~~~~~--~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 245 VNGTQLEVYDEHSGKGIWKIAVPI--GVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cccceehhhhhhhhcceeEEEEcC--CceEEEeeccCcchhhhhhhcc
Confidence 88888889988876 488888765 4478899999999999997653
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.2e-11 Score=126.95 Aligned_cols=416 Identities=13% Similarity=0.123 Sum_probs=238.0
Q ss_pred EecC--CceEEEEEeccCcEEEEe--cCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE---
Q 001319 352 FHPS--HQTLLLVGSSNGEITLWE--LAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA--- 424 (1101)
Q Consensus 352 fspd--g~~llasg~~d~~i~iwd--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~--- 424 (1101)
..|| |..++.+++.| +|. +.+|+..+ +..|-+-|+...|+|||+.+|..
T Consensus 44 l~PDI~GD~IiFt~~Dd----lWe~slk~g~~~r--------------------itS~lGVvnn~kf~pdGrkvaf~rv~ 99 (668)
T COG4946 44 LNPDIYGDRIIFTCCDD----LWEYSLKDGKPLR--------------------ITSGLGVVNNPKFSPDGRKVAFSRVM 99 (668)
T ss_pred cCCcccCcEEEEEechH----HHHhhhccCCeeE--------------------EecccceeccccCCCCCcEEEEEEEE
Confidence 4455 56677776554 555 44554433 66688899999999999999872
Q ss_pred --E--CCCeEEEEeecCCcccccceeeecccCcEEE-EEEecCCCceEEEEecCCceEE----EEE--cCCceeEEeecC
Q 001319 425 --F--TKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-LAFAYPNKLLCVVTCGDDKLIK----VWE--LSGRKLFNFEGH 493 (1101)
Q Consensus 425 --~--~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~-l~~s~d~~~~~l~s~~~d~~v~----iwd--~~~~~~~~~~~h 493 (1101)
+ ..+.+.+.+.++|+..+. ++-| ...+. .-|.|||. ++++...-.-.- ++. .+|-....+ .
T Consensus 100 ~~ss~~taDly~v~~e~Ge~kRi--TyfG--r~fT~VaG~~~dg~--iiV~TD~~tPF~q~~~lYkv~~dg~~~e~L--n 171 (668)
T COG4946 100 LGSSLQTADLYVVPSEDGEAKRI--TYFG--RRFTRVAGWIPDGE--IIVSTDFHTPFSQWTELYKVNVDGIKTEPL--N 171 (668)
T ss_pred ecCCCccccEEEEeCCCCcEEEE--EEec--cccceeeccCCCCC--EEEEeccCCCcccceeeeEEccCCceeeec--c
Confidence 2 234588888899876542 2223 33444 45999999 677654332222 222 223222222 2
Q ss_pred CcCeEEEecccCCCccEEEEeccCCe------------EEEEecCCCC-eeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGK------------IKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~------------i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
-++.+.+.+- || .++.|-.--. =++|--..++ ....+..-...|++-.+-.+.-++++ +.
T Consensus 172 lGpathiv~~---dg-~ivigRntydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~~RvYFls---D~ 244 (668)
T COG4946 172 LGPATHIVIK---DG-IIVIGRNTYDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVGERVYFLS---DH 244 (668)
T ss_pred CCceeeEEEe---CC-EEEEccCcccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEcceEEEEe---cc
Confidence 3344444431 33 3333321111 1234322222 11112222223444333333334444 33
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEee---ccC--CCC----CC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST---DAE--GGL----PN 631 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~---~~~--~~~----~~ 631 (1101)
++-|.|+--|+....+ +.-...+ ...+-..+.||+.++.. ..|.|++||..+..+...- +.. ... .+
T Consensus 245 eG~GnlYSvdldGkDl-rrHTnFt--dYY~R~~nsDGkrIvFq-~~GdIylydP~td~lekldI~lpl~rk~k~~k~~~p 320 (668)
T COG4946 245 EGVGNLYSVDLDGKDL-RRHTNFT--DYYPRNANSDGKRIVFQ-NAGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNP 320 (668)
T ss_pred cCccceEEeccCCchh-hhcCCch--hccccccCCCCcEEEEe-cCCcEEEeCCCcCcceeeecCCccccccccccccCH
Confidence 4566666666554322 2211111 12333456788877653 4578999998775443211 110 000 01
Q ss_pred CCeeE-Eec-CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 632 LPRLR-FSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 632 v~~v~-~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
..-+. |++ +|.+++..+. |...+.+...+. .+
T Consensus 321 skyledfa~~~Gd~ia~VSR-GkaFi~~~~~~~-~i-------------------------------------------- 354 (668)
T COG4946 321 SKYLEDFAVVNGDYIALVSR-GKAFIMRPWDGY-SI-------------------------------------------- 354 (668)
T ss_pred HHhhhhhccCCCcEEEEEec-CcEEEECCCCCe-eE--------------------------------------------
Confidence 11111 333 5777777765 455454433220 00
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCC-eEEEEEecCCCCCCCCCeeeecccccccc
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGKATASAVPQHWLP 788 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1101)
+ .++...|.-..+..+++.++.+..|| .+-+++...
T Consensus 355 -------------------q----v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~-------------------- 391 (668)
T COG4946 355 -------------------Q----VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDG-------------------- 391 (668)
T ss_pred -------------------E----cCCCCceEEEEEccCCcceEEeccCCceEEEEecCC--------------------
Confidence 0 12344455556666666788888887 777776543
Q ss_pred CCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC
Q 001319 789 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED 867 (1101)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d 867 (1101)
++..... ..-+.|.++..++||++++++. ...|.+.|++++.....-+...+-|+.++|+| +++++|.+--+
T Consensus 392 --~e~kr~e----~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~-nsr~iAYafP~ 464 (668)
T COG4946 392 --GEVKRIE----KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHP-NSRWIAYAFPE 464 (668)
T ss_pred --ceEEEee----CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcC-CceeEEEecCc
Confidence 2211111 2557799999999999999888 57899999999998777676777899999999 99999998877
Q ss_pred C----cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEe
Q 001319 868 S----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 907 (1101)
Q Consensus 868 g----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s 907 (1101)
| .|++||+.+++....-. ..+-=.+-+|.||+++|..-+
T Consensus 465 gy~tq~Iklydm~~~Kiy~vTT-~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 465 GYYTQSIKLYDMDGGKIYDVTT-PTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeeeeEEEEecCCCeEEEecC-CcccccCcccCCCCcEEEEEe
Confidence 6 68999999888654432 233345678999999887654
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.66 E-value=1.3e-13 Score=150.38 Aligned_cols=320 Identities=12% Similarity=0.079 Sum_probs=200.1
Q ss_pred EEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEE
Q 001319 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV 590 (1101)
Q Consensus 511 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~ 590 (1101)
+++-..++.|.+.|..+.+....+.........+.|+|||+++++++. ++.|.++|+.+++.+.++.... ....
T Consensus 9 ~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~r----dg~vsviD~~~~~~v~~i~~G~--~~~~ 82 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANR----DGTVSVIDLATGKVVATIKVGG--NPRG 82 (369)
T ss_dssp EEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEET----TSEEEEEETTSSSEEEEEE-SS--EEEE
T ss_pred EEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcC----CCeEEEEECCcccEEEEEecCC--Ccce
Confidence 356667899999999998888888766555566889999999999875 7899999999999999987644 4667
Q ss_pred EEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCC-----CCCCCeeEEecCCCEEEEEEc-CCcEEEEEcccccc
Q 001319 591 VQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG-----LPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLR 663 (1101)
Q Consensus 591 ~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~-----~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~~~~ 663 (1101)
+++++||++++++. .++.+.++|.++.+.+..+...+. ...+..+..+|....+++.-. .+.|.+.|......
T Consensus 83 i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~ 162 (369)
T PF02239_consen 83 IAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKN 162 (369)
T ss_dssp EEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSC
T ss_pred EEEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccc
Confidence 99999999999875 789999999999999888764321 224556666777665554444 35555555432200
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEE
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRL 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 743 (1101)
.
T Consensus 163 ~------------------------------------------------------------------------------- 163 (369)
T PF02239_consen 163 L------------------------------------------------------------------------------- 163 (369)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred EeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc
Q 001319 744 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 823 (1101)
Q Consensus 744 ~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 823 (1101)
.. +.. ..........|+|++++++++.
T Consensus 164 ---------~~-------~~i-------------------------------------~~g~~~~D~~~dpdgry~~va~ 190 (369)
T PF02239_consen 164 ---------KV-------TTI-------------------------------------KVGRFPHDGGFDPDGRYFLVAA 190 (369)
T ss_dssp ---------EE-------EEE-------------------------------------E--TTEEEEEE-TTSSEEEEEE
T ss_pred ---------ce-------eee-------------------------------------cccccccccccCcccceeeecc
Confidence 00 000 0122344567888888876654
Q ss_pred --CCeEEEEECCCceEEEEeeC----CCCCeeEEEEecC---------CCCEEEEEeCCCcEEEEEeecceEEEeeccCC
Q 001319 824 --GGKISLFNMMTFKVMTTFMS----PPPASTFLAFHPQ---------DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 888 (1101)
Q Consensus 824 --dg~i~vwd~~~~~~~~~~~~----~~~~i~~l~~s~~---------~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 888 (1101)
.++|.++|.++++.+..+.. |..+...+ .+|. .+...++.-....+.+|+..+.+.++++....
T Consensus 191 ~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~-php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G 269 (369)
T PF02239_consen 191 NGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANF-PHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQG 269 (369)
T ss_dssp GGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEE-EETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SS
T ss_pred cccceeEEEeeccceEEEEeeccccccccccccc-cCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCC
Confidence 57888899888877766542 22222222 1221 22232222233456678888899999998776
Q ss_pred CCeeEEEEcCCCCEEEEE----eCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE--e-CCeEEE
Q 001319 889 KRITGLAFSTSLNILVSS----GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--H-ETQLAI 961 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~----s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~--~-d~~i~v 961 (1101)
++ .-+..+|+++++.+. ...++|.++|..+.+...... ...+ ..+.++.|++||+.+.++ . ++.|.+
T Consensus 270 ~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~--~~~~---~~~~h~ef~~dG~~v~vS~~~~~~~i~v 343 (369)
T PF02239_consen 270 GG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT--PGPG---KRVVHMEFNPDGKEVWVSVWDGNGAIVV 343 (369)
T ss_dssp SS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH--HHHT-----EEEEEE-TTSSEEEEEEE--TTEEEE
T ss_pred Cc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe--ccCC---CcEeccEECCCCCEEEEEEecCCCEEEE
Confidence 66 788899999999988 445899999999964332211 1111 248899999999988774 2 448999
Q ss_pred EEcCCceeeeEecc
Q 001319 962 YDASKMERIRQWTP 975 (1101)
Q Consensus 962 ~d~~~~~~~~~~~~ 975 (1101)
||..+.+.+..+..
T Consensus 344 ~D~~Tl~~~~~i~~ 357 (369)
T PF02239_consen 344 YDAKTLKEKKRIPV 357 (369)
T ss_dssp EETTTTEEEEEEE-
T ss_pred EECCCcEEEEEEEe
Confidence 99999999888763
|
... |
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.7e-14 Score=157.28 Aligned_cols=249 Identities=17% Similarity=0.167 Sum_probs=181.5
Q ss_pred CCccEEEEEEcc-CCCEEEEEECCCeEEEEeecCCccc--ccce-eeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 405 VPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDL--RQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 405 h~~~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~--~~~~-~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
....|.|++|+| +..+||.|+.+|.|.+||+..+... .... ....|..+|+.+.|..+-...-+++++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 467999999999 6778888889999999999987652 2111 23478999999999876543358999999999999
Q ss_pred EcCC--cee-----EEee------cCCcCeEEEecccCCCccEEEEeccCCeEEEEe---cCCCC-----eeeeccCCCC
Q 001319 481 ELSG--RKL-----FNFE------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL---YDTMG-----SRVDYDAPGH 539 (1101)
Q Consensus 481 d~~~--~~~-----~~~~------~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd---~~~~~-----~~~~~~~~~~ 539 (1101)
+... .++ .... .-...++++.|.+.. -..++.|+.+|.|.-=. ..... ....+..|.+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~-p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g 399 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTD-PNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIG 399 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCC-CceEEEEcCCcEEEEEeccCCcccccccccccccccccCc
Confidence 9222 111 1111 122357888887764 46788999999987622 22222 1224566778
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-CCeeEEEecccCCcceEEEEEeCCCCE-EEEEeCCCcEEEEECCCC
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNH-FLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~~~dg~i~iwd~~~~ 617 (1101)
.|+++.++|-+..++..+. |-+++||... ...++..+..+.. .+..++|+|...- ++++..||.|.+||+...
T Consensus 400 ~v~~v~~nPF~~k~fls~g----DW~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 400 PVYAVSRNPFYPKNFLSVG----DWTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred ceEeeecCCCccceeeeec----cceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 9999999998877666553 8899999988 6666666666655 5889999998755 455668999999998754
Q ss_pred ee--eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 618 NI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 618 ~~--~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.. +...... ....+.+.|+++|+.|++|...|++.+|++...
T Consensus 475 ~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~ 518 (555)
T KOG1587|consen 475 DEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSES 518 (555)
T ss_pred ccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCch
Confidence 43 3333322 345678889999999999999999999998644
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-14 Score=161.13 Aligned_cols=255 Identities=11% Similarity=0.051 Sum_probs=180.7
Q ss_pred cccCCccEEEEEEccCC-CEEEEEECCCeEEEEeecCCc----ccccceeeecccCcEEEEEEecCCCceEEEEecCCce
Q 001319 402 FKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg-~~las~~~d~~i~vwd~~~~~----~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~ 476 (1101)
+..|...|..++.++.. .++++|+.||+|++||...-. ..+...++..-..++.++.+.+.+. .+|.++.||.
T Consensus 1044 L~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~--~~Av~t~DG~ 1121 (1431)
T KOG1240|consen 1044 LHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGD--QFAVSTKDGS 1121 (1431)
T ss_pred hhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCC--eEEEEcCCCe
Confidence 66788888899888755 999999999999999986421 1222223444567899999999999 6888899999
Q ss_pred EEEEEcCC---ce-----eEEeec-CCcCeEEE-ecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CCCCceEEE
Q 001319 477 IKVWELSG---RK-----LFNFEG-HEAPVYSI-CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTM 544 (1101)
Q Consensus 477 v~iwd~~~---~~-----~~~~~~-h~~~v~~v-~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~ 544 (1101)
|++.+.+- +. .+.... ..+.+.++ ++........++.+..-+.|..||++.....+.+. ...+.|+++
T Consensus 1122 v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTSi 1201 (1431)
T KOG1240|consen 1122 VRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTSI 1201 (1431)
T ss_pred EEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeEE
Confidence 99998322 11 111111 22334443 34333222378888889999999998877665443 345579999
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCC---CEEEEEe--CCCcEEEEECCCCee
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVG--EDSQIKFWDMDNVNI 619 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~--~dg~i~iwd~~~~~~ 619 (1101)
+.+|.+.+++.|.. .|.+.+||++-+.++..+.-.....+..++.+|-. ...++++ ..+.|.+|++.+|..
T Consensus 1202 ~idp~~~WlviGts----~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~ 1277 (1431)
T KOG1240|consen 1202 VIDPWCNWLVIGTS----RGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLR 1277 (1431)
T ss_pred EecCCceEEEEecC----CceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcc
Confidence 99999999999986 88999999999998888776655677777777643 3555544 578899999999876
Q ss_pred eEeeccCCCC-----------------CCCCeeEEecCCCEEEEEEcCCcEEEEEccccc
Q 001319 620 LTSTDAEGGL-----------------PNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 620 ~~~~~~~~~~-----------------~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
..++...... .......+...+.++.+|+.|..|+.||.....
T Consensus 1278 ~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~ 1337 (1431)
T KOG1240|consen 1278 QTVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPE 1337 (1431)
T ss_pred eEEEEcCCCCcchhhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcc
Confidence 6655433110 011222333345688899999999999987663
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.64 E-value=6.7e-13 Score=142.40 Aligned_cols=574 Identities=12% Similarity=0.145 Sum_probs=339.3
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
+......|++|+....| +|+|+.||.+++-.+.+...-.. .-.+...+...-..++.||.+.|.-+.|+.+.+.|
T Consensus 12 PnnvkL~c~~WNke~gy-IAcgG~dGlLKVlKl~t~t~d~~----~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKL 86 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGY-IACGGADGLLKVLKLGTDTTDLN----KSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKL 86 (1189)
T ss_pred CCCceEEEEEEcccCCe-EEeccccceeEEEEccccCCccc----ccccccccccchhhhhccCcceEEEEEeccccccc
Confidence 34567899999998875 69999999999999876543211 00111122222234699999999999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeE--EeecCCcCeEE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF--NFEGHEAPVYS 499 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~--~~~~h~~~v~~ 499 (1101)
-+...+|.|.||-+-.|.-.... .-......|.+++|..||. .++....||.|.|=..+|..+. .+++. ....
T Consensus 87 TtSDt~GlIiVWmlykgsW~EEM-iNnRnKSvV~SmsWn~dG~--kIcIvYeDGavIVGsvdGNRIwgKeLkg~--~l~h 161 (1189)
T KOG2041|consen 87 TTSDTSGLIIVWMLYKGSWCEEM-INNRNKSVVVSMSWNLDGT--KICIVYEDGAVIVGSVDGNRIWGKELKGQ--LLAH 161 (1189)
T ss_pred cccCCCceEEEEeeecccHHHHH-hhCcCccEEEEEEEcCCCc--EEEEEEccCCEEEEeeccceecchhcchh--eccc
Confidence 99999999999999887644321 1234566799999999999 6777788888876666665542 22221 2346
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCee-------e----eccCCCCceEEEEEc--------cCCCEEEEeecCC
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-------V----DYDAPGHWCTTMLYS--------ADGSRLFSCGTSK 560 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-------~----~~~~~~~~v~~~~~s--------~d~~~l~~~~~~~ 560 (1101)
+.|++ |...++.+-..|.+.++|....-.. . .+...+..+..+.|. ||...++++..
T Consensus 162 v~ws~--D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~-- 237 (1189)
T KOG2041|consen 162 VLWSE--DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYA-- 237 (1189)
T ss_pred eeecc--cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEc--
Confidence 67766 5567777888899999986532110 1 011112234444442 47778888775
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC---------CcEEEEECCCCeeeEeeccCCCCCC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---------SQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
+|.+++-.-.+......+... -.+....|+++|..|+++|.+ +.|.+|. .-|+.+.+++.++. .
T Consensus 238 --nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fys-p~G~i~gtlkvpg~--~ 310 (1189)
T KOG2041|consen 238 --NGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYS-PYGHIVGTLKVPGS--C 310 (1189)
T ss_pred --CceehhhhhcCCCCCeEEecc--cEeecceecCCCcEEEEccCcccccCccccceEEEec-cchhheEEEecCCc--e
Confidence 666666543332222222221 145568899999999998853 2455554 35777888887765 7
Q ss_pred CCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCC
Q 001319 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1101)
Q Consensus 632 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 711 (1101)
|++++|-..|-.++.+- |+.|.+=+++.... .-.++. .+.+--.+. ....
T Consensus 311 It~lsWEg~gLriA~Av-dsfiyfanIRP~yk-Wgy~e~-----------TvVy~y~~~-----------------e~p~ 360 (1189)
T KOG2041|consen 311 ITGLSWEGTGLRIAIAV-DSFIYFANIRPEYK-WGYIEE-----------TVVYVYQKE-----------------ELPQ 360 (1189)
T ss_pred eeeeEEcCCceEEEEEe-cceEEEEeecccce-EEEeee-----------EEEEEEccC-----------------CCcc
Confidence 99999988887777654 56777766543311 000000 011100000 0111
Q ss_pred CceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCc
Q 001319 712 SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSG 791 (1101)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 791 (1101)
+.+..|+......... .-....+++++.+--.++.-..+|.+.-++.-.. + +. .....+.+ .-|
T Consensus 361 y~i~Fwdtk~nek~vK--------~V~~~~~~a~~~ehCvL~~~~d~~~i~e~s~le~-~---~~---~~~l~LCN-SIG 424 (1189)
T KOG2041|consen 361 YGIMFWDTKTNEKTVK--------TVTHFENMAFYREHCVLINRQDDGVIPEYSTLEN-R---SR---VYFLQLCN-SIG 424 (1189)
T ss_pred eEEEEEecccChhhhh--------hhcceeehheecccEEEEeccccCCCcchhhhhc-c---cc---eEEEeeec-ccC
Confidence 2222344333222111 1122345556655555555555665554321000 0 00 00000000 001
Q ss_pred cceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC---CCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 792 LLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS---PPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 792 ~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
..+.. .-..|.-.-..-++..++.++...+.+|.....+....+.+ +...- |+- ...-+|+.|+
T Consensus 425 T~lD~------kytdirP~Fv~vn~~~vviAS~e~~~iWhy~~pK~~s~l~~~k~rkegr----~h~---Ddtp~ga~d~ 491 (1189)
T KOG2041|consen 425 TSLDY------KYTDIRPKFVCVNGICVVIASEERYFIWHYVLPKFNSVLAGVKIRKEGR----FHG---DDTPEGAQDR 491 (1189)
T ss_pred CcCCC------CcceeeeeEEEecceEEEEeccccEEEEEEeccchhhhhhhhhhccccc----ccC---CCCccchhhc
Confidence 11110 11112222223367888899988999998765444333322 22111 332 1223455666
Q ss_pred cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCC
Q 001319 869 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 948 (1101)
Q Consensus 869 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 948 (1101)
++.- . ..++.|..++|-+++.+ .++|..+-..|.|.-+.+..........+. ..+..++..-..
T Consensus 492 ~l~y---s----~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~n-------~~~y~~~lNCns 555 (1189)
T KOG2041|consen 492 TLEY---S----TKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPVN-------PSIYSIKLNCNS 555 (1189)
T ss_pred eeec---c----ceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeeccccC-------chheeEeeccCc
Confidence 5432 1 34567888999999887 578999999999999999886544433332 567788888888
Q ss_pred CEEEEEe-CCeEEEEEcC---CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 949 VRMLVVH-ETQLAIYDAS---KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 949 ~~l~~~~-d~~i~v~d~~---~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
..+++-+ -|.+.+.|+. ++..+..+.... ...|+.+.|..|+..|++--+...++|++-...+
T Consensus 556 tRlAiId~~gv~tf~dLd~d~~g~ql~~~~~~e--rrDVWd~~Wa~dNp~llAlmeKtrmyifrgndpe 622 (1189)
T KOG2041|consen 556 TRLAIIDLVGVVTFQDLDYDFDGDQLKLIYTSE--RRDVWDYEWAQDNPNLLALMEKTRMYIFRGNDPE 622 (1189)
T ss_pred chhhhhhhhceeeeeecccccCcceeeeeehhh--hhhhhhhhhccCCchHHhhhhhceEEEecCcCcc
Confidence 8888754 6778888776 444444333322 6779999999888877766666677887755443
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3e-14 Score=136.87 Aligned_cols=244 Identities=13% Similarity=0.211 Sum_probs=175.9
Q ss_pred ecCCCcEEEEEEecCCc----eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 341 LHQGSTVISMDFHPSHQ----TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~----~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
+.|.-+++.+.|.|+.. .|||+. +-.+|+|.+...+...... ..+....-..+..++++..|..
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~----------~~L~~~kns~~~aPlTSFDWne 160 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQ----------SVLNNNKNSEFCAPLTSFDWNE 160 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehh----------hhhccCcccccCCccccccccc
Confidence 67999999999999862 367764 3489999997532111000 0011112344678999999998
Q ss_pred -CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc---eeEEee
Q 001319 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFE 491 (1101)
Q Consensus 417 -dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~---~~~~~~ 491 (1101)
|-++|.+++-|-+..|||+++|..-.....|-.|...|..++|...+.. +++|.|.||+||+|| ..-. .+++-.
T Consensus 161 ~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~-~FASvgaDGSvRmFDLR~leHSTIIYE~p 239 (364)
T KOG0290|consen 161 VDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRD-VFASVGADGSVRMFDLRSLEHSTIIYEDP 239 (364)
T ss_pred CCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccc-eEEEecCCCcEEEEEecccccceEEecCC
Confidence 7889999999999999999998442233367899999999999998777 899999999999999 3322 222222
Q ss_pred cCCcCeEEEecccCCCccEEEEeccC-CeEEEEecCCCC-eeeeccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEE
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~i 568 (1101)
....+...++|+.. |-+++++-..| ..|.+-|++... ....+..|...|+.++|.|.. ..+++++. |..+.+
T Consensus 240 ~~~~pLlRLswnkq-DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGD----D~qali 314 (364)
T KOG0290|consen 240 SPSTPLLRLSWNKQ-DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGD----DCQALI 314 (364)
T ss_pred CCCCcceeeccCcC-CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCC----cceEEE
Confidence 23567888999865 45788877666 468899998765 456889999999999999964 57778775 889999
Q ss_pred EeCCCCe------eEEEecccCCcceEEEEEeCC-CCEEEEEe
Q 001319 569 WNESEGT------IKRTYAGFRKKSNGVVQFDTT-QNHFLAVG 604 (1101)
Q Consensus 569 wd~~~~~------~~~~~~~~~~~~v~~~~~~~~-~~~l~~~~ 604 (1101)
||+...- ++..+. .+..|+.+.|++. +.+++++.
T Consensus 315 WDl~q~~~~~~~dPilay~--a~~EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 315 WDLQQMPRENGEDPILAYT--AGGEVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred EecccccccCCCCchhhhh--ccceeeeeeecccCCCEEEEEe
Confidence 9987532 222222 2236888999964 45666554
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.3e-14 Score=138.83 Aligned_cols=236 Identities=16% Similarity=0.177 Sum_probs=177.8
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
.++|+|.||++|+. .+|++.....|.||.....+.- ...+++..|...|++|+|+|....|++
T Consensus 10 ~~pitchAwn~drt-~iAv~~~~~evhiy~~~~~~~w----------------~~~htls~Hd~~vtgvdWap~snrIvt 72 (361)
T KOG1523|consen 10 LEPITCHAWNSDRT-QIAVSPNNHEVHIYSMLGADLW----------------EPAHTLSEHDKIVTGVDWAPKSNRIVT 72 (361)
T ss_pred cCceeeeeecCCCc-eEEeccCCceEEEEEecCCCCc----------------eeceehhhhCcceeEEeecCCCCceeE
Confidence 46899999999998 5688888889999998766521 134568899999999999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeE-----EeecCCcCeE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLF-----NFEGHEAPVY 498 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~-----~~~~h~~~v~ 498 (1101)
|+.|..-+||....+...++...+..|...++++.|+|.+. .+++|+.-+.|.||-.+++.-. .-+.+...|.
T Consensus 73 cs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~en--kFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~ 150 (361)
T KOG1523|consen 73 CSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKEN--KFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVT 150 (361)
T ss_pred ccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCc--eEEeccCccEEEEEEEecccceehhhhhCCcccccee
Confidence 99999999999955555555557788999999999999999 7999999999999984443321 2245677899
Q ss_pred EEecccCCCccEEEEeccCCeEEEEec-----CC-------------CCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLY-----DT-------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~-----~~-------------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
++.|++ ++-+|++|+.|+..|++.. +. +....++...++++..+.|+|+|..|+-.+.
T Consensus 151 sldWhp--nnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~H-- 226 (361)
T KOG1523|consen 151 SLDWHP--NNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGH-- 226 (361)
T ss_pred eeeccC--CcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecC--
Confidence 999998 5578999999999999853 21 1122234456778999999999999999886
Q ss_pred CCCceEEEEeCCCCe-eEEEecccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 561 DGDSFLVEWNESEGT-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
|..+.+-|..... .+........ +...+.|-.+ +.++.++.|
T Consensus 227 --ds~v~~~da~~p~~~v~~~~~~~l-P~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 227 --DSTVSFVDAAGPSERVQSVATAQL-PLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred --CCceEEeecCCCchhccchhhccC-CceeeEeecC-CceeecCCC
Confidence 8888888876654 2333222222 4444444433 345555544
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.1e-13 Score=130.18 Aligned_cols=238 Identities=12% Similarity=0.171 Sum_probs=171.2
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccC--cEEEEEEecCCCceEEEEecC-----CceEEEE
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG--AVNDLAFAYPNKLLCVVTCGD-----DKLIKVW 480 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~--~V~~l~~s~d~~~~~l~s~~~-----d~~v~iw 480 (1101)
...+++|..|...+++|..+| .+||+.+--+... .-.-+.+ .+..+-| -.+.+.|+-|+. -..|.||
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~---~r~~~~~G~~~veMLf--R~N~laLVGGg~~pky~pNkviIW 80 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESA---SRQFIDGGFKIVEMLF--RSNYLALVGGGSRPKYPPNKVIIW 80 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhh---hhccccCchhhhhHhh--hhceEEEecCCCCCCCCCceEEEE
Confidence 455699999999999998888 9999987533211 1111222 2222222 233223333332 2479999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC-CCCeeeeccCCC--CceEEEEEccCCCEEEEe
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGSRVDYDAPG--HWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~ 556 (1101)
| ...+++.++. ...+|.+|.+.. + .|++. .++.|.+|.+. +.+....+.... ....+++-..+..+|+.-
T Consensus 81 DD~k~~~i~el~-f~~~I~~V~l~r--~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 81 DDLKERCIIELS-FNSEIKAVKLRR--D--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ecccCcEEEEEE-eccceeeEEEcC--C--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcC
Confidence 9 8899998887 567899999865 2 44443 47899999987 444444443322 234444444444455554
Q ss_pred ecCCCCCceEEEEeCCCCee--EEEecccCCcceEEEEEeCCCCEEEEEeCCCc-EEEEECCCCeeeEeeccCCCCCCCC
Q 001319 557 GTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
+. ..|.|++-|+...+. ...+..|.. .|.+++.+-+|..+++++..|+ |+|||..+|+++..+........|.
T Consensus 155 g~---k~GqvQi~dL~~~~~~~p~~I~AH~s-~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy 230 (346)
T KOG2111|consen 155 GF---KTGQVQIVDLASTKPNAPSIINAHDS-DIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIY 230 (346)
T ss_pred CC---ccceEEEEEhhhcCcCCceEEEcccC-ceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEE
Confidence 43 578999999876655 467777777 8999999999999999998887 8999999999999987666667899
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+++|||++.+|+++++.|+++|+.+...
T Consensus 231 ~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 231 CIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999999999999998764
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3e-14 Score=161.72 Aligned_cols=220 Identities=15% Similarity=0.162 Sum_probs=148.0
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEecc---CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d---~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
.....|...|.+.+|||||+++ |..+.+ ..|.+||+.+++.... ..+.+| ..+++|
T Consensus 197 ~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l-----------------~~~~g~---~~~~~w 255 (429)
T PRK01742 197 FIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVV-----------------ASFRGH---NGAPAF 255 (429)
T ss_pred eEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEE-----------------ecCCCc---cCceeE
Confidence 3345578899999999999976 444432 3799999988754220 013333 346899
Q ss_pred ccCCCEEEEEE-CCCeEEEE--eecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEE
Q 001319 415 SPDGNYVGVAF-TKHLIQLY--SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFN 489 (1101)
Q Consensus 415 spdg~~las~~-~d~~i~vw--d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~ 489 (1101)
||||++|+.++ .+|.+.|| |+.+++. . .+..+...+...+|+|||+. +++++..++...||+ ..+.....
T Consensus 256 SPDG~~La~~~~~~g~~~Iy~~d~~~~~~-~---~lt~~~~~~~~~~wSpDG~~-i~f~s~~~g~~~I~~~~~~~~~~~~ 330 (429)
T PRK01742 256 SPDGSRLAFASSKDGVLNIYVMGANGGTP-S---QLTSGAGNNTEPSWSPDGQS-ILFTSDRSGSPQVYRMSASGGGASL 330 (429)
T ss_pred CCCCCEEEEEEecCCcEEEEEEECCCCCe-E---eeccCCCCcCCEEECCCCCE-EEEEECCCCCceEEEEECCCCCeEE
Confidence 99999999875 57766555 5555543 2 45667778899999999995 344555678888888 44444433
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
+ .+.+ ....|+| ||+.|+.++.++ +.+||+.++........ ....++.|+|||++++.++. ++...+|
T Consensus 331 l-~~~~--~~~~~Sp--DG~~ia~~~~~~-i~~~Dl~~g~~~~lt~~--~~~~~~~~sPdG~~i~~~s~----~g~~~~l 398 (429)
T PRK01742 331 V-GGRG--YSAQISA--DGKTLVMINGDN-VVKQDLTSGSTEVLSST--FLDESPSISPNGIMIIYSST----QGLGKVL 398 (429)
T ss_pred e-cCCC--CCccCCC--CCCEEEEEcCCC-EEEEECCCCCeEEecCC--CCCCCceECCCCCEEEEEEc----CCCceEE
Confidence 3 3443 3456766 667888877765 55599887765433222 23456789999999999875 4445555
Q ss_pred eC--CCCeeEEEecccCCcceEEEEEeCC
Q 001319 570 NE--SEGTIKRTYAGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 570 d~--~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1101)
.+ .+|+.++.+.++.+ .+...+|+|-
T Consensus 399 ~~~~~~G~~~~~l~~~~g-~~~~p~wsp~ 426 (429)
T PRK01742 399 QLVSADGRFKARLPGSDG-QVKFPAWSPY 426 (429)
T ss_pred EEEECCCCceEEccCCCC-CCCCcccCCC
Confidence 53 35777888876665 5677888874
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.61 E-value=8e-14 Score=136.21 Aligned_cols=230 Identities=18% Similarity=0.206 Sum_probs=178.2
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
-..+|+|.||++|+..+|++.....|.||.....+......++..|...|+.++|+|... .|++|+.|+.-+||. .+
T Consensus 9 ~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~sn--rIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 9 LLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSN--RIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred ccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCC--ceeEccCCCCccccccCC
Confidence 346899999999999999999999999999999887777889999999999999999998 699999999999999 35
Q ss_pred Cc---eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----eccCCCCceEEEEEccCCCEEEEe
Q 001319 484 GR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 484 ~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+. +...+..+....++|.|+|.+ +.+++|+..+.|.+|-++....-. ........|.++.|.|++-+++.|
T Consensus 87 ~~~WkptlvLlRiNrAAt~V~WsP~e--nkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG 164 (361)
T KOG1523|consen 87 GGTWKPTLVLLRINRAATCVKWSPKE--NKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG 164 (361)
T ss_pred CCeeccceeEEEeccceeeEeecCcC--ceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence 43 445667789999999999855 689999999999999887655432 223345578999999999999999
Q ss_pred ecCCCCCceEEEEeC-----CC-------------CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 557 GTSKDGDSFLVEWNE-----SE-------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~-----~~-------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
+. |+..+++.. ++ |++...+. ...+.+..+.|+|+|+.|+-.+.|..+.+-|.....
T Consensus 165 s~----D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 165 ST----DGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred cc----CcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 86 777777742 11 22333333 233468889999999999999999999999987654
Q ss_pred -eeEeeccCCCCCCCCeeEEecCCCEEE
Q 001319 619 -ILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 619 -~~~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
.+....... -+..++.|-.+...++
T Consensus 240 ~~v~~~~~~~--lP~ls~~~ise~~vv~ 265 (361)
T KOG1523|consen 240 ERVQSVATAQ--LPLLSVSWISENSVVA 265 (361)
T ss_pred hhccchhhcc--CCceeeEeecCCceee
Confidence 233222221 2556666665544333
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.61 E-value=7.3e-14 Score=159.32 Aligned_cols=177 Identities=14% Similarity=0.167 Sum_probs=137.0
Q ss_pred EEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC-------eeeeccCCCCceEEEEEccCCCE
Q 001319 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG-------SRVDYDAPGHWCTTMLYSADGSR 552 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~-------~~~~~~~~~~~v~~~~~s~d~~~ 552 (1101)
|+..|..+..+..|...|..++.++. ++.++++||.||+|++|+..... ...++...+..+.++.+.+.+..
T Consensus 1034 W~p~G~lVAhL~Ehs~~v~k~a~s~~-~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~ 1112 (1431)
T KOG1240|consen 1034 WNPRGILVAHLHEHSSAVIKLAVSSE-HTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQ 1112 (1431)
T ss_pred CCccceEeehhhhccccccceeecCC-CCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCe
Confidence 88999999999999999999988753 55899999999999999976432 23455556778999999999999
Q ss_pred EEEeecCCCCCceEEEEeCCCC-------eeEEEecccCCcc-eEEEEEeCC-CC-EEEEEeCCCcEEEEECCCCeeeEe
Q 001319 553 LFSCGTSKDGDSFLVEWNESEG-------TIKRTYAGFRKKS-NGVVQFDTT-QN-HFLAVGEDSQIKFWDMDNVNILTS 622 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~-------~~~~~~~~~~~~~-v~~~~~~~~-~~-~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1101)
+|+++. ||.|++.+++-- ...+....+..+. +..-++... +. .++.+...+.|..||.+.......
T Consensus 1113 ~Av~t~----DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~ 1188 (1431)
T KOG1240|consen 1113 FAVSTK----DGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWR 1188 (1431)
T ss_pred EEEEcC----CCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHh
Confidence 999974 999999887651 1222222222222 333334332 23 677788999999999999888877
Q ss_pred eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++.....+.|++++.+|.+.+++.|+..|.+.+||++=+
T Consensus 1189 lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~ 1227 (1431)
T KOG1240|consen 1189 LKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFR 1227 (1431)
T ss_pred hhcCccccceeEEEecCCceEEEEecCCceEEEEEeecC
Confidence 776666668999999999999999999999999998755
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=6.5e-13 Score=131.80 Aligned_cols=283 Identities=14% Similarity=0.190 Sum_probs=185.5
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVGV 423 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~las 423 (1101)
..+..++|++.-- -+|++..|-.|+|||-.. ++... .-......|+|++|-|. ++-||+
T Consensus 99 ~dlr~~aWhqH~~-~fava~nddvVriy~kss-t~pt~------------------Lks~sQrnvtclawRPlsaselav 158 (445)
T KOG2139|consen 99 IDLRGVAWHQHII-AFAVATNDDVVRIYDKSS-TCPTK------------------LKSVSQRNVTCLAWRPLSASELAV 158 (445)
T ss_pred cceeeEeechhhh-hhhhhccCcEEEEeccCC-CCCce------------------ecchhhcceeEEEeccCCcceeee
Confidence 3688899999654 357888999999999665 22210 11223568999999995 567788
Q ss_pred EECCCeEEEEeecCCccc-----------ccceeeecccCcEEEEEEecCCCceEEEEec-CCceEEEEE-cCCceeEEe
Q 001319 424 AFTKHLIQLYSYAGSNDL-----------RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGRKLFNF 490 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~-----------~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d~~v~iwd-~~~~~~~~~ 490 (1101)
|+..| |.+|.....-.. .+.....|| .+|++++|.+||. .+++++ .|..|.||| .+|.++.-.
T Consensus 159 gCr~g-IciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt--~l~tAS~gsssi~iWdpdtg~~~pL~ 234 (445)
T KOG2139|consen 159 GCRAG-ICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGT--ILVTASFGSSSIMIWDPDTGQKIPLI 234 (445)
T ss_pred eecce-eEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCC--EEeecccCcceEEEEcCCCCCccccc
Confidence 87776 999987532111 111123455 6899999999999 677766 466899999 777665444
Q ss_pred ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEe
Q 001319 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 570 (1101)
...-+.+.-+.|+| ||.+|+.++-|+..++|+....-.........+.|...+|+|+|++|+.... +...+ |.
T Consensus 235 ~~glgg~slLkwSP--dgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s---gsp~l--ys 307 (445)
T KOG2139|consen 235 PKGLGGFSLLKWSP--DGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS---GSPRL--YS 307 (445)
T ss_pred ccCCCceeeEEEcC--CCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc---CCceE--EE
Confidence 34556788999988 6689999999999999965443332223333448999999999998886653 23233 32
Q ss_pred CC----CCe-----------eEEEec------c--cCCcceEEEEEeCCCCEEEEEeCC--------CcEEEEECCCCee
Q 001319 571 ES----EGT-----------IKRTYA------G--FRKKSNGVVQFDTTQNHFLAVGED--------SQIKFWDMDNVNI 619 (1101)
Q Consensus 571 ~~----~~~-----------~~~~~~------~--~~~~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~~~~~~ 619 (1101)
+. .+. ++..+. + .-.+...+++|.|.|.++++.-.. +.|.+||.+..-.
T Consensus 308 l~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ 387 (445)
T KOG2139|consen 308 LTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPP 387 (445)
T ss_pred EeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCc
Confidence 21 100 111111 1 012357789999999999986533 3467788765444
Q ss_pred eEeec--cCCCCCCCCeeEEec---CCCEEEEEEcCCcEEEEEcc
Q 001319 620 LTSTD--AEGGLPNLPRLRFSK---EGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 620 ~~~~~--~~~~~~~v~~v~~s~---~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+.... ..++. .-..+.|+| +|.+|.++-..|.+.-|++.
T Consensus 388 vels~cg~i~ge-~P~~IsF~pl~n~g~lLsiaWsTGriq~ypl~ 431 (445)
T KOG2139|consen 388 VELSYCGMIGGE-YPAYISFGPLKNEGRLLSIAWSTGRIQRYPLT 431 (445)
T ss_pred eEEEecccccCC-CCceEEeeecccCCcEEEEEeccCceEeeeeE
Confidence 43331 11111 235677776 67888888888888887764
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.2e-14 Score=147.64 Aligned_cols=293 Identities=13% Similarity=0.108 Sum_probs=219.8
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.|.+|.+.|..|.|...|..|++|+.|..|.+||+..++....+ ..||...|....|-|.....-+++++.||.|++=
T Consensus 137 kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f--~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s 214 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSF--ESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVS 214 (559)
T ss_pred cccCCCCccceeeecccCceeeccCccceEEeehhhccCccccc--ccccccchhhhhccCCCCCcCceeccccCceeee
Confidence 37889999999999999999999999999999999998765533 3489999999999886544479999999999998
Q ss_pred E--cCCcee--EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc---CCCC---ceEEEEEccCC
Q 001319 481 E--LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGH---WCTTMLYSADG 550 (1101)
Q Consensus 481 d--~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~---~v~~~~~s~d~ 550 (1101)
. .++.+. ..+..|.++|.-++.-|.. -..+.+++.|+.+.-.|++.......+. .+.. ....++..|-.
T Consensus 215 ~i~~t~~~e~t~rl~~h~g~vhklav~p~s-p~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~n 293 (559)
T KOG1334|consen 215 EILETGYVENTKRLAPHEGPVHKLAVEPDS-PKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRN 293 (559)
T ss_pred eeccccceecceecccccCccceeeecCCC-CCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCC
Confidence 8 555543 5566799999999987764 3678899999999999988765433221 1112 45788888866
Q ss_pred C-EEEEeecCCCCCceEEEEeCCCCe------eEEEecc-----cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--
Q 001319 551 S-RLFSCGTSKDGDSFLVEWNESEGT------IKRTYAG-----FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-- 616 (1101)
Q Consensus 551 ~-~l~~~~~~~~~~~~i~iwd~~~~~------~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-- 616 (1101)
. .+++++. +..+++||.+.-. .+..+.. ...-.|++++|+.++.-+++...|-.|+++...-
T Consensus 294 t~~faVgG~----dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~ 369 (559)
T KOG1334|consen 294 TNEFAVGGS----DQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGD 369 (559)
T ss_pred ccccccCCh----hhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEecccccc
Confidence 6 6667765 8889999976422 1222222 2223588999999988899988999999995432
Q ss_pred C----------eeeEe-eccCCCCCCCCeeEE-ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeee
Q 001319 617 V----------NILTS-TDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1101)
Q Consensus 617 ~----------~~~~~-~~~~~~~~~v~~v~~-s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1101)
| ..+.. +++|.....|..+-| -|...++++|++=|.|.||+-.++ +.++.+++
T Consensus 370 G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~-eii~~Meg-------------- 434 (559)
T KOG1334|consen 370 GSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTG-EIIRFMEG-------------- 434 (559)
T ss_pred CCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchh-HHHHHhhc--------------
Confidence 2 12222 566666666777765 678899999999999999998877 45544433
Q ss_pred eeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 685 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
...-|.++.-+|--..|++.+-|..|+||
T Consensus 435 ---------------------------------------------------Dr~VVNCLEpHP~~PvLAsSGid~DVKIW 463 (559)
T KOG1334|consen 435 ---------------------------------------------------DRHVVNCLEPHPHLPVLASSGIDHDVKIW 463 (559)
T ss_pred ---------------------------------------------------ccceEeccCCCCCCchhhccCCccceeee
Confidence 11256777777877889999999999999
Q ss_pred Ee
Q 001319 765 KW 766 (1101)
Q Consensus 765 ~~ 766 (1101)
.-
T Consensus 464 TP 465 (559)
T KOG1334|consen 464 TP 465 (559)
T ss_pred cC
Confidence 64
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=6.7e-13 Score=150.10 Aligned_cols=237 Identities=11% Similarity=0.117 Sum_probs=156.4
Q ss_pred cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC---CCeEEEEeecCCcccccc
Q 001319 368 EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQH 444 (1101)
Q Consensus 368 ~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~ 444 (1101)
.|.+||.+...... +..+...+.+.+|||||+.||..+. +..|.+||+.+|+...
T Consensus 180 ~l~~~d~dg~~~~~--------------------lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~-- 237 (429)
T PRK03629 180 ELRVSDYDGYNQFV--------------------VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-- 237 (429)
T ss_pred eEEEEcCCCCCCEE--------------------eecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--
Confidence 68888887654321 4446678999999999999997642 4579999998876432
Q ss_pred eeeecccCcEEEEEEecCCCceEEEEecCCc--eEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CCeEE
Q 001319 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIK 521 (1101)
Q Consensus 445 ~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~ 521 (1101)
+....+.+...+|+|||+. ++++.+.++ .|.+||..+..+..+..+...+....|+| ||+.|+..+. ++...
T Consensus 238 --l~~~~~~~~~~~~SPDG~~-La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSP--DG~~I~f~s~~~g~~~ 312 (429)
T PRK03629 238 --VASFPRHNGAPAFSPDGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAYTSDQAGRPQ 312 (429)
T ss_pred --ccCCCCCcCCeEECCCCCE-EEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECC--CCCEEEEEeCCCCCce
Confidence 2223334557899999995 333444444 58889944444455555555677888877 5677766554 44555
Q ss_pred EE--ecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCE
Q 001319 522 AW--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1101)
Q Consensus 522 ~w--d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1101)
+| |+.++... .+...........|+|||++++..+.. ++...|.+||+.+++........ ......|+|||++
T Consensus 313 Iy~~d~~~g~~~-~lt~~~~~~~~~~~SpDG~~Ia~~~~~-~g~~~I~~~dl~~g~~~~Lt~~~---~~~~p~~SpDG~~ 387 (429)
T PRK03629 313 VYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQVLTDTF---LDETPSIAPNGTM 387 (429)
T ss_pred EEEEECCCCCeE-EeecCCCCccCEEECCCCCEEEEEEcc-CCCceEEEEECCCCCeEEeCCCC---CCCCceECCCCCE
Confidence 55 55554332 333344456678999999999887642 23567999999888754333221 2334779999999
Q ss_pred EEEEeCCCc---EEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 600 FLAVGEDSQ---IKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 600 l~~~~~dg~---i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
|+.++.++. ++++++. |.....+..+. ..+...+|+|
T Consensus 388 i~~~s~~~~~~~l~~~~~~-G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 388 VIYSSSQGMGSVLNLVSTD-GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred EEEEEcCCCceEEEEEECC-CCCeEECccCC--CCcCCcccCC
Confidence 999887654 6777874 44445554433 3577888887
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.6e-09 Score=129.65 Aligned_cols=446 Identities=13% Similarity=0.121 Sum_probs=256.5
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEE----eecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLY----SYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vw----d~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
...+.|.++.|-+|...++.+..+|.|.+. +..+... . ....-...|.+++||||+. +|+....++++.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~-E---~VG~vd~GI~a~~WSPD~E--lla~vT~~~~l~~ 146 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEI-E---IVGSVDSGILAASWSPDEE--LLALVTGEGNLLL 146 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCcee-E---EEEEEcCcEEEEEECCCcC--EEEEEeCCCEEEE
Confidence 346789999999999999999999999999 5544321 1 2334566899999999999 6666666888887
Q ss_pred EEcCCceeEEeecCCc-----CeEEEecccCCCccEEEEeccCCeEEEEecCCCCe----eeeccCCCCceEEEEEccCC
Q 001319 480 WELSGRKLFNFEGHEA-----PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADG 550 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~-----~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~d~ 550 (1101)
-+.+-.++....-+.. .-..+-|-... .-+-|+..+...- .....+. ...+. ....-..++|-.||
T Consensus 147 mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKe---TQF~Gs~gK~aa~-~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG 221 (928)
T PF04762_consen 147 MTRDFDPISEVPLDSDDFGESKHVSVGWGKKE---TQFHGSAGKAAAR-QLRDPTVPKVDEGKLS-WDDGRVRISWRGDG 221 (928)
T ss_pred EeccceEEEEeecCccccCCCceeeeccCccc---CccCcchhhhhhh-hccCCCCCccccCccc-cCCCceEEEECCCC
Confidence 7766655554433221 12223332111 0111111110000 0000000 01111 23345689999999
Q ss_pred CEEEEeecCCC-C-CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC---CCcEEEEECCCCeeeEeecc
Q 001319 551 SRLFSCGTSKD-G-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 551 ~~l~~~~~~~~-~-~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~~~~~ 625 (1101)
.++|+.+.+.. + ...+++|+-+ |.+..+-..-.+ --..++|-|.|+.+++... ...|.+|..+ |-.-..+..
T Consensus 222 ~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~g-Le~~l~WrPsG~lIA~~q~~~~~~~VvFfErN-GLrhgeF~l 298 (928)
T PF04762_consen 222 EYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDG-LEGALSWRPSGNLIASSQRLPDRHDVVFFERN-GLRHGEFTL 298 (928)
T ss_pred cEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCC-ccCCccCCCCCCEEEEEEEcCCCcEEEEEecC-CcEeeeEec
Confidence 99998875322 2 5789999976 666555543332 4556899999999988653 4567777754 333333332
Q ss_pred C--CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcce
Q 001319 626 E--GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKV 703 (1101)
Q Consensus 626 ~--~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~ 703 (1101)
. .....|..+.|++|+..||+...|. |.+|-..+---.++..
T Consensus 299 ~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqe----------------------------------- 342 (928)
T PF04762_consen 299 RFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQE----------------------------------- 342 (928)
T ss_pred CCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEE-----------------------------------
Confidence 2 2344789999999999999987655 9999876542111110
Q ss_pred eccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCc-ccEEEeecCCeEEEEEecCCCCCCCCCeeeecc
Q 001319 704 ERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 782 (1101)
Q Consensus 704 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~-~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~ 782 (1101)
+.++ ....+..+.|+|.. ..+...+.+|.+..+++.-
T Consensus 343 ------------------------i~~~----~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~-------------- 380 (928)
T PF04762_consen 343 ------------------------IRFS----SSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAW-------------- 380 (928)
T ss_pred ------------------------EEcc----CCCCCCceEECCCCCCEEEEEecCCcEEEEEEEE--------------
Confidence 0000 11122236676644 3355555557776665421
Q ss_pred ccccccCCccceeeccCCCCCCCCEeEEEecC-CCCeEEEEcCCeEEEEECCCceE-----EEEeeCCCCCeeEEEEecC
Q 001319 783 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKV-----MTTFMSPPPASTFLAFHPQ 856 (1101)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~~-----~~~~~~~~~~i~~l~~s~~ 856 (1101)
+...+ -..+| |...+++.++.++.+-.+..... ...+. -...|.+++|++
T Consensus 381 ----~v~~s------------------~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPPMs~~~l~-~~~~v~~vaf~~- 436 (928)
T PF04762_consen 381 ----DVSRS------------------PGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPPMSSYELE-LPSPVNDVAFSP- 436 (928)
T ss_pred ----EEEec------------------CCCCccCceEEEEEeCCeEEEecccccCCCchHhceEEc-CCCCcEEEEEeC-
Confidence 11000 00112 22234444455677766654321 12232 246799999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecceEE--------Eeec----------cCCCCeeEEEEcCCCCEEEEEeCC---CcEEEE
Q 001319 857 DNNIIAIGTEDSTIHIYNVRVDEVK--------SKLK----------GHQKRITGLAFSTSLNILVSSGAD---AQLCVW 915 (1101)
Q Consensus 857 ~~~~la~g~~dg~v~iwd~~~~~~~--------~~~~----------~h~~~V~~l~~s~d~~~l~s~s~D---g~v~lw 915 (1101)
++..+|+-..||.|.+|........ ..+. .-...+..++|..+...++....+ ..+.++
T Consensus 437 ~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 516 (928)
T PF04762_consen 437 SNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQLAWLNDDTLLVLSDSDSNQSKIVLV 516 (928)
T ss_pred CCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEEEEEeCCCEEEEEEecCcccceEEEE
Confidence 6766889999999999996543211 1111 123457888998887776666654 678888
Q ss_pred ECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCce
Q 001319 916 SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKME 968 (1101)
Q Consensus 916 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~ 968 (1101)
++...+......... .. ...+..+...++...++. ..+|.+..++.....
T Consensus 517 ~~~~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~ 567 (928)
T PF04762_consen 517 DIDDSENSASVESST-EV--DGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGEL 567 (928)
T ss_pred EeccCCCceeEEEEe-cc--CceEEEEeeCCCCcEEEEEECCCEEEEeecCCCc
Confidence 885433211111111 11 134445555555553333 568888866665443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.9e-14 Score=148.42 Aligned_cols=241 Identities=14% Similarity=0.152 Sum_probs=166.5
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--C
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d 417 (1101)
+.||.+.|.|++|+.||. ||++|+.|-.+.|||.-..+.++ .+-.||.+.|.++.|-| +
T Consensus 46 L~GH~GCVN~LeWn~dG~-lL~SGSDD~r~ivWd~~~~Kllh------------------sI~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 46 LTGHTGCVNCLEWNADGE-LLASGSDDTRLIVWDPFEYKLLH------------------SISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hccccceecceeecCCCC-EEeecCCcceEEeecchhcceee------------------eeecccccceeEEeeeccCC
Confidence 357999999999999998 78999999999999998666554 35789999999999999 6
Q ss_pred CCEEEEEECCCeEEEEeecCCc-------ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC-CceeE
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSN-------DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS-GRKLF 488 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~-------~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~-~~~~~ 488 (1101)
.+.+++|..|..|+++|+...+ ...+...+..|...|..++-.|++.+ .+.++++||+|+-+| .. -.+-.
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~Ph-tfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPH-TFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCc-eEEEecCCcceeeecccCCccCCc
Confidence 7889999999999999998521 12233356789999999999999966 899999999999999 33 12211
Q ss_pred E---------eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-----CCCCceEEEE-EccCCCEE
Q 001319 489 N---------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTTML-YSADGSRL 553 (1101)
Q Consensus 489 ~---------~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~~~-~s~d~~~l 553 (1101)
. +...--...++.++|.. ..+|++|+.|-..++||.+.......-. .+.....|+. |+|.+-
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltisp~r-p~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hl-- 262 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTISPSR-PYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHL-- 262 (758)
T ss_pred cccccHHHHHhchhhheeeeeeecCCC-CceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccc--
Confidence 1 11112245677888874 4799999999999999964322111100 0011111221 122211
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
.. .++.+ .... ...+-++|+|+|..|++.-....|+++|+..++....+.
T Consensus 263 --kn----~~gn~----------~~~~-----~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y~ 312 (758)
T KOG1310|consen 263 --KN----SQGNL----------DRYI-----TCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPTPYF 312 (758)
T ss_pred --cC----ccccc----------ccce-----eeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCceeec
Confidence 00 01101 0000 135558999999888886666689999999887665553
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=129.75 Aligned_cols=300 Identities=11% Similarity=0.128 Sum_probs=195.2
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
.+..++|++.-..++++..|-.|++|+-... ....++
T Consensus 100 dlr~~aWhqH~~~fava~nddvVriy~ksst--~pt~Lk----------------------------------------- 136 (445)
T KOG2139|consen 100 DLRGVAWHQHIIAFAVATNDDVVRIYDKSST--CPTKLK----------------------------------------- 136 (445)
T ss_pred ceeeEeechhhhhhhhhccCcEEEEeccCCC--CCceec-----------------------------------------
Confidence 4678899997778899999999999986542 111111
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCC
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSS 790 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1101)
......|++++|-|.+...++.+-.+.|.+|.......... .++......
T Consensus 137 -----------------------s~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~~r-------~~~~~s~~~ 186 (445)
T KOG2139|consen 137 -----------------------SVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNANR-------NIRMMSTHH 186 (445)
T ss_pred -----------------------chhhcceeEEEeccCCcceeeeeecceeEEEEcCccccccc-------ccccccccc
Confidence 11345678888888877777777778899998654321100 000001111
Q ss_pred ccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 791 GLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 791 ~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
++++. ..+| .+|+++.+.+||..+++++ +..|.|||..++..+.......+.++-+.||| |+.+|.+++-|+
T Consensus 187 ~qvl~----~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSP-dgd~lfaAt~da 260 (445)
T KOG2139|consen 187 LQVLQ----DPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSP-DGDVLFAATCDA 260 (445)
T ss_pred hhhee----CCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcC-CCCEEEEecccc
Confidence 11211 1124 7899999999999999998 56799999999988776655577899999999 999999999999
Q ss_pred cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc----------cceEE--------ee
Q 001319 869 TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR----------KSVTI--------HI 930 (1101)
Q Consensus 869 ~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~----------~~~~~--------~~ 930 (1101)
..++|............--++.|...+|+|+|++|..+.. |.-++|.+...+.- ....+ ..
T Consensus 261 vfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~a 339 (445)
T KOG2139|consen 261 VFRLWQENQSWTKERWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICA 339 (445)
T ss_pred eeeeehhcccceecceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhc
Confidence 9999965544333444445569999999999997665443 22344444221110 00000 00
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEeC---------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc---CCCEEEEE
Q 001319 931 PAGKTPTGDTRVQFNADQVRMLVVHE---------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSC---NSQLVFAT 998 (1101)
Q Consensus 931 ~~~~~~~~v~~~~~s~d~~~l~~~~d---------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~---dg~~l~s~ 998 (1101)
....-.+...+++|+|.|.+|++... ..|.+||....-.+...............++|+| +|.+|..+
T Consensus 340 g~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~vels~cg~i~ge~P~~IsF~pl~n~g~lLsia 419 (445)
T KOG2139|consen 340 GQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVELSYCGMIGGEYPAYISFGPLKNEGRLLSIA 419 (445)
T ss_pred CcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceEEEecccccCCCCceEEeeecccCCcEEEEE
Confidence 01111267889999999999999532 2366777765544444322111133355666665 67777778
Q ss_pred eCCCcEEEEeCC
Q 001319 999 FCDGNIGVFDAD 1010 (1101)
Q Consensus 999 ~~dg~i~vwd~~ 1010 (1101)
=..|.|.-|++.
T Consensus 420 WsTGriq~ypl~ 431 (445)
T KOG2139|consen 420 WSTGRIQRYPLT 431 (445)
T ss_pred eccCceEeeeeE
Confidence 788888887764
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=4.7e-11 Score=135.45 Aligned_cols=277 Identities=14% Similarity=0.122 Sum_probs=188.1
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC--CccEEEEEEccCCCEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~v~~~~~spdg~~la 422 (1101)
..+.+.++-. +||+| +..-.|.+||+..+..+.. ++ +...+..| ++.+.. .+.+++
T Consensus 8 ~~l~~~~~~~--~~lla--g~gp~i~~yd~~s~~li~~--~~-----------~~~~~~~H~~e~~~~l-----~~~~~v 65 (967)
T KOG0974|consen 8 GPLNLPQLVS--DYLLA--GSGPEILVYDLSSGCLIRH--LI-----------QSKILEVHRGEGKVKL-----LSGKIV 65 (967)
T ss_pred ccccchhhcc--ceeee--cCCCceEEeeCCchhHhhh--hh-----------hhccccccccccccee-----ccceEE
Confidence 3455555544 46654 3455799999998876642 11 11224445 111111 233444
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe--EE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV--YS 499 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v--~~ 499 (1101)
++..-+.+..=+..-. .+..-.+.|....+..+.+ .++.+..+..+.+|| ..+..+.......... .+
T Consensus 66 ~~~~~~~v~~~~~~~~-------~~~~~s~wi~g~~l~~e~k--~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~ 136 (967)
T KOG0974|consen 66 TCAKSDEVYVKEASNQ-------IIERFSDWIFGAKLFEENK--KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSS 136 (967)
T ss_pred EEEeecceeecchhhh-------hhhhccccccccchhhhcc--eEEEEEcCceEEEEecccCceehhcCCCceEEEEeE
Confidence 5543333333222211 1112333455566666777 577777789999999 6666555554322211 12
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE-
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR- 578 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~- 578 (1101)
+-+-...+.-++++|+.-+.|.+|+.........+.+|.+.|.++.++.||+++++++. |..+++|++++++...
T Consensus 137 ~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~Sd----DRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 137 LIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSD----DRSIRLWPIDSREVLGC 212 (967)
T ss_pred EEEeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEec----CcceeeeecccccccCc
Confidence 22222334578999999999999998865555678999999999999999999999996 8999999999988776
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
..-+|.. .+..++|.|+ .++++++|-+.++|+.+ +..+..+..|.. ..+..++..++...+++++.|+.+++|+.
T Consensus 213 ~~fgHsa-Rvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~h~g-~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l 287 (967)
T KOG0974|consen 213 TGFGHSA-RVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDEHSG-KGIWKIAVPIGVIIKVTGGNDSTLKLWDL 287 (967)
T ss_pred ccccccc-eeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhhhhh-cceeEEEEcCCceEEEeeccCcchhhhhh
Confidence 6667776 7888889887 99999999999999765 444446655543 36889999999999999999999999998
Q ss_pred ccc
Q 001319 659 AIG 661 (1101)
Q Consensus 659 ~~~ 661 (1101)
...
T Consensus 288 ~~r 290 (967)
T KOG0974|consen 288 NGR 290 (967)
T ss_pred hcc
Confidence 654
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.8e-09 Score=129.44 Aligned_cols=504 Identities=13% Similarity=0.152 Sum_probs=281.0
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEE----ecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLW----ELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iw----d~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
..+.|.++.|-++...+ +.+..+|.|.+. +..+..... ...-...|.+++||||+
T Consensus 74 ~~~~ivs~~yl~d~~~l-~~~~~~Gdi~~~~~~~~~~~~~~E~--------------------VG~vd~GI~a~~WSPD~ 132 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESL-CIALASGDIILVREDPDPDEDEIEI--------------------VGSVDSGILAASWSPDE 132 (928)
T ss_pred CCCcEEEEEeccCCCcE-EEEECCceEEEEEccCCCCCceeEE--------------------EEEEcCcEEEEEECCCc
Confidence 35789999999998754 667889999999 544433221 23346799999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCCcee--------
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKL-------- 487 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~~~~-------- 487 (1101)
..||..+.+++|.+-+- +.+. |....+.++ |.. ..++.|..+.=.-|. ..|+..
T Consensus 133 Ella~vT~~~~l~~mt~-~fd~-------------i~E~~l~~~~~~~~-~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~ 197 (928)
T PF04762_consen 133 ELLALVTGEGNLLLMTR-DFDP-------------ISEVPLDSDDFGES-KHVSVGWGKKETQFHGSAGKAAARQLRDPT 197 (928)
T ss_pred CEEEEEeCCCEEEEEec-cceE-------------EEEeecCccccCCC-ceeeeccCcccCccCcchhhhhhhhccCCC
Confidence 99999999998877542 2111 111111111 100 234433222211222 122210
Q ss_pred ------EEeecCCcCeEEEecccCCCccEEEEecc------CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 488 ------FNFEGHEAPVYSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 488 ------~~~~~h~~~v~~v~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
..+. +...-..|+| .+||.++++.+. -+.+|+|+-+ +.....-..-.+--.+++|-|.|+++|+
T Consensus 198 ~~~~d~~~~s-~dd~~~~ISW--RGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~ 273 (928)
T PF04762_consen 198 VPKVDEGKLS-WDDGRVRISW--RGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIAS 273 (928)
T ss_pred CCccccCccc-cCCCceEEEE--CCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEE
Confidence 1112 3334455666 668899988775 2579999854 3333333322333457899999999998
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecc---cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEe--eccCCCCC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAG---FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS--TDAEGGLP 630 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~--~~~~~~~~ 630 (1101)
... ......|.+|.- +|-....|.. .....+..+.|++++..|+..-.|. |++|...+...... +.... ..
T Consensus 274 ~q~-~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~-~~ 349 (928)
T PF04762_consen 274 SQR-LPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSS-SE 349 (928)
T ss_pred EEE-cCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccC-CC
Confidence 875 333456777763 4443333333 2334688899999999999977665 99999988764332 22222 22
Q ss_pred CCCeeEEecC-CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 631 NLPRLRFSKE-GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 631 ~v~~v~~s~~-g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
.+..+.|+|. ...|.+.+.+|.+..++..-.. ..++.
T Consensus 350 ~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v---------------------~~s~~--------------------- 387 (928)
T PF04762_consen 350 SVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDV---------------------SRSPG--------------------- 387 (928)
T ss_pred CCCceEECCCCCCEEEEEecCCcEEEEEEEEEE---------------------EecCC---------------------
Confidence 3556999994 5567777777887776643110 00000
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccC
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 789 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1101)
.+|+...+++.-+...+++-.+......|. +..+
T Consensus 388 -----------------------------------~~~~D~g~vaVIDG~~lllTpf~~a~VPPP--------Ms~~--- 421 (928)
T PF04762_consen 388 -----------------------------------SSPNDNGTVAVIDGNKLLLTPFRRAVVPPP--------MSSY--- 421 (928)
T ss_pred -----------------------------------CCccCceEEEEEeCCeEEEecccccCCCch--------Hhce---
Confidence 000011111122222333332221111100 0000
Q ss_pred CccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceE--------EEEee----------CCCCCeeE
Q 001319 790 SGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKV--------MTTFM----------SPPPASTF 850 (1101)
Q Consensus 790 ~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~--------~~~~~----------~~~~~i~~ 850 (1101)
. .....+|.+++|++++..+|+-. ||.|.+|....... ...+. .....+..
T Consensus 422 ---~-------l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 422 ---E-------LELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ 491 (928)
T ss_pred ---E-------EcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence 0 12567899999999987665554 99988888543211 11111 12345788
Q ss_pred EEEecCCCCEEEEEeCC---CcEEEEEeecce---EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 001319 851 LAFHPQDNNIIAIGTED---STIHIYNVRVDE---VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 924 (1101)
Q Consensus 851 l~~s~~~~~~la~g~~d---g~v~iwd~~~~~---~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~ 924 (1101)
++|.. +..+++....+ ..+.++++...+ .......-.+.+..+...++...++.-..||.|...+........
T Consensus 492 ~~~~~-~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~G~v~~~~~~~~~~~~ 570 (928)
T PF04762_consen 492 LAWLN-DDTLLVLSDSDSNQSKIVLVDIDDSENSASVESSTEVDGVVLIISSSPDSGSLYIQTNDGKVFQLSSDGELSQI 570 (928)
T ss_pred EEEeC-CCEEEEEEecCcccceEEEEEeccCCCceeEEEEeccCceEEEEeeCCCCcEEEEEECCCEEEEeecCCCcccc
Confidence 88987 66666666554 678888874332 233333344566666666666557777789988866665533211
Q ss_pred ceEEeecCCCCCCCcceEEEcCCCC--EEEEE--eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 925 SVTIHIPAGKTPTGDTRVQFNADQV--RMLVV--HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~v~~~~~s~d~~--~l~~~--~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
...+.. ..-..+....+.. .++.| ..+.+++ ++..+ ...+++..+. +.+|+....
T Consensus 571 ---~~fp~~---c~~~~~~~~~~~~~~~~~~GLs~~~~Ly~----n~~~l---------a~~~tSF~v~--~~~Ll~TT~ 629 (928)
T PF04762_consen 571 ---VKFPQP---CPWMEVCQINGSEDKRVLFGLSSNGRLYA----NSRLL---------ASNCTSFAVT--DSFLLFTTT 629 (928)
T ss_pred ---ccCCCC---CcEEEEEEECCccceeEEEEECCCCEEEE----CCEEE---------ecCCceEEEE--cCEEEEEec
Confidence 111110 1111222222222 23333 2344433 12221 4557777774 667777777
Q ss_pred CCcEEEEeCC
Q 001319 1001 DGNIGVFDAD 1010 (1101)
Q Consensus 1001 dg~i~vwd~~ 1010 (1101)
...+++.++.
T Consensus 630 ~h~l~fv~L~ 639 (928)
T PF04762_consen 630 QHTLKFVHLN 639 (928)
T ss_pred CceEEEEECc
Confidence 7889999988
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.3e-14 Score=146.61 Aligned_cols=290 Identities=16% Similarity=0.220 Sum_probs=220.5
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.-..+.|+.+|++| +.|+.-|.|-.+|+.+++...... -...|..+.|-.+.+++|++-
T Consensus 131 GPY~~~ytrnGrhl-llgGrKGHlAa~Dw~t~~L~~Ei~--------------------v~Etv~Dv~~LHneq~~AVAQ 189 (545)
T KOG1272|consen 131 GPYHLDYTRNGRHL-LLGGRKGHLAAFDWVTKKLHFEIN--------------------VMETVRDVTFLHNEQFFAVAQ 189 (545)
T ss_pred CCeeeeecCCccEE-EecCCccceeeeecccceeeeeee--------------------hhhhhhhhhhhcchHHHHhhh
Confidence 45778899999987 567789999999999988765311 234788999999999999884
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEeccc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~ 504 (1101)
...+.|||-..-+ +. -++.| ..|..+.|.|-.- +|++++..|.++.-| .+|+.+..+..-.+.+..++-+|
T Consensus 190 -K~y~yvYD~~GtE-lH---Clk~~-~~v~rLeFLPyHf--LL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP 261 (545)
T KOG1272|consen 190 -KKYVYVYDNNGTE-LH---CLKRH-IRVARLEFLPYHF--LLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNP 261 (545)
T ss_pred -hceEEEecCCCcE-Ee---ehhhc-Cchhhhcccchhh--eeeecccCCceEEEeechhhhhHHHHccCCccchhhcCC
Confidence 5569999976533 33 23334 4599999999876 899999999999999 99999999988888898888776
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1101)
- +..+-.|...|+|.+|.....+....+..|.++|.++++.++|+|+++.+. |..++|||++....+.++...
T Consensus 262 ~--NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~----Dr~~kIWDlR~~~ql~t~~tp- 334 (545)
T KOG1272|consen 262 Y--NAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGL----DRKVKIWDLRNFYQLHTYRTP- 334 (545)
T ss_pred c--cceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeeccc----ccceeEeeeccccccceeecC-
Confidence 4 368889999999999999999999999999999999999999999999986 889999999988776666552
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEE-CCCC--eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWD-MDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd-~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.....+++|..| +++++....|.||. .-.+ ..-..+-.|.-...|..+.|.|-...|-+|...|.-.+.-...|
T Consensus 335 -~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~l~FcP~EDvLGIGH~~G~tsilVPGsG 411 (545)
T KOG1272|consen 335 -HPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNHRCGGPVEDLRFCPYEDVLGIGHAGGITSILVPGSG 411 (545)
T ss_pred -CCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhhccCcccccceeccHHHeeeccccCCceeEeccCCC
Confidence 245567787654 45555556899994 2221 12122222222347899999998888888877776666555555
Q ss_pred ccccccccCCCcc
Q 001319 662 LRSLRAVENPPFE 674 (1101)
Q Consensus 662 ~~~~~~~~~~~~~ 674 (1101)
...+..++..+++
T Consensus 412 ePN~Ds~e~nPfe 424 (545)
T KOG1272|consen 412 EPNYDSLEDNPFE 424 (545)
T ss_pred CCCcchhccCcch
Confidence 5555555554443
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-13 Score=149.97 Aligned_cols=224 Identities=14% Similarity=0.127 Sum_probs=150.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
+..+...+.+.+|||||+.||..+.+ ..|.+||+.+++... +....+.+.+.+|+|||+. ++++.+.++...
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~----l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~ 265 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV----VANFKGSNSAPAWSPDGRT-LAVALSRDGNSQ 265 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999987643 459999999886433 3334456778999999995 345677788777
Q ss_pred EEE--cCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCCeEEEEecC--CCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD--TMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 479 iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~--~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
||. ..+..+..+..+.+......|++ ||+.|+..+ .++...+|.++ ++... .+...+......+|+|||+++
T Consensus 266 Iy~~d~~~~~~~~lt~~~~~~~~~~wSp--DG~~l~f~s~~~g~~~Iy~~~~~~g~~~-~lt~~g~~~~~~~~SpDG~~I 342 (427)
T PRK02889 266 IYTVNADGSGLRRLTQSSGIDTEPFFSP--DGRSIYFTSDRGGAPQIYRMPASGGAAQ-RVTFTGSYNTSPRISPDGKLL 342 (427)
T ss_pred EEEEECCCCCcEECCCCCCCCcCeEEcC--CCCEEEEEecCCCCcEEEEEECCCCceE-EEecCCCCcCceEECCCCCEE
Confidence 776 55555667766666666778877 667776554 35667777654 33322 222233344568899999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC---cEEEEECCCCeeeEeeccCCCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+..+.. .+...|.+||+.+++......+. ......|+|||++|+.++.++ .+++.+. ++.....+..+.+
T Consensus 343 a~~s~~-~g~~~I~v~d~~~g~~~~lt~~~---~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~~~~g-- 415 (427)
T PRK02889 343 AYISRV-GGAFKLYVQDLATGQVTALTDTT---RDESPSFAPNGRYILYATQQGGRSVLAAVSS-DGRIKQRLSVQGG-- 415 (427)
T ss_pred EEEEcc-CCcEEEEEEECCCCCeEEccCCC---CccCceECCCCCEEEEEEecCCCEEEEEEEC-CCCceEEeecCCC--
Confidence 977642 23457999999988765433321 234578999999998877443 3566666 4555555543322
Q ss_pred CCCeeEEecC
Q 001319 631 NLPRLRFSKE 640 (1101)
Q Consensus 631 ~v~~v~~s~~ 640 (1101)
.+...+|+|-
T Consensus 416 ~~~~p~wsp~ 425 (427)
T PRK02889 416 DVREPSWGPF 425 (427)
T ss_pred CCCCCccCCC
Confidence 4677788763
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.9e-12 Score=147.72 Aligned_cols=237 Identities=11% Similarity=0.033 Sum_probs=161.5
Q ss_pred CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC---CCeEEEEeecCCccccc
Q 001319 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (1101)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 443 (1101)
..|.+||.+..... .+..|...+.+.+|||||+.||..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg~~~~--------------------~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-- 239 (435)
T PRK05137 182 KRLAIMDQDGANVR--------------------YLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-- 239 (435)
T ss_pred eEEEEECCCCCCcE--------------------EEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE--
Confidence 37888887654332 25567889999999999999998764 468999999988643
Q ss_pred ceeeecccCcEEEEEEecCCCceEEEEecCCce--EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CC--
Q 001319 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL--IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG-- 518 (1101)
Q Consensus 444 ~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~-- 518 (1101)
.+..+.+.+...+|+|||+. ++++.+.++. |.+||..+..+..+..+.+......|+| ||+.|+..+. +|
T Consensus 240 --~l~~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~sp--DG~~i~f~s~~~g~~ 314 (435)
T PRK05137 240 --LVGNFPGMTFAPRFSPDGRK-VVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSP--DGSQIVFESDRSGSP 314 (435)
T ss_pred --EeecCCCcccCcEECCCCCE-EEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcC--CCCEEEEEECCCCCC
Confidence 35566777889999999995 4456666665 7777855555666776776677788877 5677766553 33
Q ss_pred eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC
Q 001319 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1101)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1101)
.|.+||+..+.... +......+....|+|||++++..... .+...|.+||+.++.. +.+... ..+....|+|||+
T Consensus 315 ~Iy~~d~~g~~~~~-lt~~~~~~~~~~~SpdG~~ia~~~~~-~~~~~i~~~d~~~~~~-~~lt~~--~~~~~p~~spDG~ 389 (435)
T PRK05137 315 QLYVMNADGSNPRR-ISFGGGRYSTPVWSPRGDLIAFTKQG-GGQFSIGVMKPDGSGE-RILTSG--FLVEGPTWAPNGR 389 (435)
T ss_pred eEEEEECCCCCeEE-eecCCCcccCeEECCCCCEEEEEEcC-CCceEEEEEECCCCce-EeccCC--CCCCCCeECCCCC
Confidence 57778876654433 33334456678999999999887642 2345789999866543 333221 1355688999999
Q ss_pred EEEEEeCC------CcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 599 HFLAVGED------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 599 ~l~~~~~d------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
.|+..+.+ ..++++|+..+.. ..+...+ .+...+|+|
T Consensus 390 ~i~~~~~~~~~~~~~~L~~~dl~g~~~-~~l~~~~---~~~~p~Wsp 432 (435)
T PRK05137 390 VIMFFRQTPGSGGAPKLYTVDLTGRNE-REVPTPG---DASDPAWSP 432 (435)
T ss_pred EEEEEEccCCCCCcceEEEEECCCCce-EEccCCC---CccCcccCC
Confidence 98875532 3688888876554 3443221 356677776
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.9e-14 Score=144.94 Aligned_cols=233 Identities=14% Similarity=0.174 Sum_probs=194.5
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
...-..+.++.+|++|+.|+..|.|..+|+.+++... ++. -...|.++.|..+.+ +++. .....+.|||..|.
T Consensus 129 eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~---Ei~-v~Etv~Dv~~LHneq--~~AV-AQK~y~yvYD~~Gt 201 (545)
T KOG1272|consen 129 EFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHF---EIN-VMETVRDVTFLHNEQ--FFAV-AQKKYVYVYDNNGT 201 (545)
T ss_pred ccCCeeeeecCCccEEEecCCccceeeeecccceeee---eee-hhhhhhhhhhhcchH--HHHh-hhhceEEEecCCCc
Confidence 4466789999999999999999999999999987655 332 345699999998888 4554 45789999999999
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
.++.++.|. .|..+.|.|- --+|++++..|.++.-|+.+++....+....+.+..|+-+|-+..+-+|.. .|+
T Consensus 202 ElHClk~~~-~v~rLeFLPy--HfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~Ghs----nGt 274 (545)
T KOG1272|consen 202 ELHCLKRHI-RVARLEFLPY--HFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHS----NGT 274 (545)
T ss_pred EEeehhhcC-chhhhcccch--hheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCC----Cce
Confidence 999998765 5888888774 367888999999999999999999888888888999999999888888875 899
Q ss_pred EEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEE
Q 001319 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
|.+|.....+++..+..|.+ .+.++++.++|.++++.|.|..++|||++....+.++... + +...+++|..| +||
T Consensus 275 VSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp-~--~a~~ls~Sqkg-lLA 349 (545)
T KOG1272|consen 275 VSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTP-H--PASNLSLSQKG-LLA 349 (545)
T ss_pred EEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccceeEeeeccccccceeecC-C--Ccccccccccc-cee
Confidence 99999999999999999988 8999999999999999999999999999988776666542 1 46788888666 444
Q ss_pred EEEcCCcEEEEEc
Q 001319 646 VTTADNGFKILAN 658 (1101)
Q Consensus 646 ~~~~d~~i~iwd~ 658 (1101)
.+ ....+.||.-
T Consensus 350 ~~-~G~~v~iw~d 361 (545)
T KOG1272|consen 350 LS-YGDHVQIWKD 361 (545)
T ss_pred ee-cCCeeeeehh
Confidence 43 4457889953
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.3e-13 Score=149.83 Aligned_cols=236 Identities=12% Similarity=0.061 Sum_probs=151.9
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|-.+.--........+...+.+.+|||||++++.+.. .+..|.+|++.+++... +..
T Consensus 181 l~~~d~dg~~~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~--------------------l~~ 240 (429)
T PRK03629 181 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 240 (429)
T ss_pred EEEEcCCCCCCEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ccC
Confidence 55544333333344456778999999999997654432 24579999998876432 111
Q ss_pred CCccEEEEEEccCCCEEEEE-ECCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CCceEEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW 480 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d~~v~iw 480 (1101)
..+.+..++|||||+.|+.. +.+| .|.+||+++++..+ +..+...+....|+|||+. |+..+ .++...||
T Consensus 241 ~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----lt~~~~~~~~~~wSPDG~~--I~f~s~~~g~~~Iy 314 (429)
T PRK03629 241 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----VTDGRSNNTEPTWFPDSQN--LAYTSDQAGRPQVY 314 (429)
T ss_pred CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----ccCCCCCcCceEECCCCCE--EEEEeCCCCCceEE
Confidence 22334568999999999865 3344 58999999876433 4445567889999999994 44444 34444555
Q ss_pred --EcCCceeEEeecCCcCeEEEecccCCCccEEEEeccC---CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 481 --ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 481 --d~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
|..+.....+..+.......+|+| ||+.|+..+.+ ..|.+||+.++..... .. ........|+|||++++.
T Consensus 315 ~~d~~~g~~~~lt~~~~~~~~~~~Sp--DG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L-t~-~~~~~~p~~SpDG~~i~~ 390 (429)
T PRK03629 315 KVNINGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVL-TD-TFLDETPSIAPNGTMVIY 390 (429)
T ss_pred EEECCCCCeEEeecCCCCccCEEECC--CCCEEEEEEccCCCceEEEEECCCCCeEEe-CC-CCCCCCceECCCCCEEEE
Confidence 544444555554444556677876 66777665543 3588899887764432 22 223456789999999998
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
.+.++ +...+.++++ +|+..+.+.++.+ .+...+|+|
T Consensus 391 ~s~~~-~~~~l~~~~~-~G~~~~~l~~~~~-~~~~p~Wsp 427 (429)
T PRK03629 391 SSSQG-MGSVLNLVST-DGRFKARLPATDG-QVKFPAWSP 427 (429)
T ss_pred EEcCC-CceEEEEEEC-CCCCeEECccCCC-CcCCcccCC
Confidence 87632 2445788887 4555566666544 566677776
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-12 Score=148.23 Aligned_cols=238 Identities=14% Similarity=0.119 Sum_probs=157.6
Q ss_pred CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC---CCeEEEEeecCCccccc
Q 001319 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQ 443 (1101)
Q Consensus 367 ~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~ 443 (1101)
..|.+||...+... .+..+...+.+.+|||||+.||..+. +..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~~~~--------------------~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~- 242 (433)
T PRK04922 184 YALQVADSDGYNPQ--------------------TILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL- 242 (433)
T ss_pred EEEEEECCCCCCce--------------------EeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-
Confidence 36889998654322 14556778999999999999998874 3469999998876432
Q ss_pred ceeeecccCcEEEEEEecCCCceEEEEecCCc--eEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCCe-
Q 001319 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGK- 519 (1101)
Q Consensus 444 ~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~~- 519 (1101)
+..+.+...+.+|+|||+. ++++.+.++ .|.+||..+..+..+..+.......+|++ ||+.|+.++ .+|.
T Consensus 243 ---l~~~~g~~~~~~~SpDG~~-l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~sp--DG~~l~f~sd~~g~~ 316 (433)
T PRK04922 243 ---VASFRGINGAPSFSPDGRR-LALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAP--DGKSIYFTSDRGGRP 316 (433)
T ss_pred ---eccCCCCccCceECCCCCE-EEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCc
Confidence 3344555668899999996 344555555 69999944444566666666566778877 667776655 3454
Q ss_pred -EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC
Q 001319 520 -IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1101)
Q Consensus 520 -i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1101)
|.++++.+++... +...+......+|+|||++++.... .++...|.+||+.+++......+. ......|+|||+
T Consensus 317 ~iy~~dl~~g~~~~-lt~~g~~~~~~~~SpDG~~Ia~~~~-~~~~~~I~v~d~~~g~~~~Lt~~~---~~~~p~~spdG~ 391 (433)
T PRK04922 317 QIYRVAASGGSAER-LTFQGNYNARASVSPDGKKIAMVHG-SGGQYRIAVMDLSTGSVRTLTPGS---LDESPSFAPNGS 391 (433)
T ss_pred eEEEEECCCCCeEE-eecCCCCccCEEECCCCCEEEEEEC-CCCceeEEEEECCCCCeEECCCCC---CCCCceECCCCC
Confidence 5556665554332 2233344557899999999988754 223457999999888765332221 233468999999
Q ss_pred EEEEEeC---CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 599 HFLAVGE---DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 599 ~l~~~~~---dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
+++..+. .+.|++++...+ ....+.... ..+...+|+|
T Consensus 392 ~i~~~s~~~g~~~L~~~~~~g~-~~~~l~~~~--g~~~~p~wsp 432 (433)
T PRK04922 392 MVLYATREGGRGVLAAVSTDGR-VRQRLVSAD--GEVREPAWSP 432 (433)
T ss_pred EEEEEEecCCceEEEEEECCCC-ceEEcccCC--CCCCCCccCC
Confidence 9887664 346888888543 444443322 2466777776
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=3.2e-13 Score=140.83 Aligned_cols=120 Identities=22% Similarity=0.385 Sum_probs=106.8
Q ss_pred CCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 804 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
...|...+|||||++||+.+ ||.++|||..+.+++..++.--+...|++||| ||++|++|++|--|.||.+..++.+.
T Consensus 290 ~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP-DGKyIvtGGEDDLVtVwSf~erRVVA 368 (636)
T KOG2394|consen 290 EGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP-DGKYIVTGGEDDLVTVWSFEERRVVA 368 (636)
T ss_pred cccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC-CccEEEecCCcceEEEEEeccceEEE
Confidence 44788899999999999998 99999999999998888887778999999999 99999999999999999999999999
Q ss_pred eeccCCCCeeEEEEcC-----------------------------------CC-------------CEEEEEeCCCcEEE
Q 001319 883 KLKGHQKRITGLAFST-----------------------------------SL-------------NILVSSGADAQLCV 914 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~-----------------------------------d~-------------~~l~s~s~Dg~v~l 914 (1101)
.-.+|.+.|..++|.| ++ -++.+.+.|-++++
T Consensus 369 RGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcL 448 (636)
T KOG2394|consen 369 RGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCL 448 (636)
T ss_pred eccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEE
Confidence 9999999999999972 01 25778899999999
Q ss_pred EECCCCcccc
Q 001319 915 WSIDTWEKRK 924 (1101)
Q Consensus 915 wd~~~~~~~~ 924 (1101)
||+.......
T Consensus 449 WDlteD~L~~ 458 (636)
T KOG2394|consen 449 WDLTEDVLVP 458 (636)
T ss_pred Eecchhhccc
Confidence 9998755433
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=7.5e-13 Score=139.13 Aligned_cols=285 Identities=14% Similarity=0.142 Sum_probs=208.9
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC--CccEEEEEE
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAW 414 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~v~~~~~ 414 (1101)
+++-++|...-+.|..||||+|++|+|..--.|++||+..-... +..| ...|...-.
T Consensus 44 LiQdfe~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK---------------------FERhlDae~V~feiL 102 (703)
T KOG2321|consen 44 LIQDFEMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK---------------------FERHLDAEVVDFEIL 102 (703)
T ss_pred HHHhcCCccccceeEecCCCcEEEEecccCCceEEEEcccceee---------------------eeecccccceeEEEe
Confidence 34557788889999999999999999999999999999765432 2233 345666667
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
|.|-..++.-..|.+|.+-..-+ .... + .-...-.+++++.-... |..++....|+-++ ..|+-+..|...
T Consensus 103 sDD~SK~v~L~~DR~IefHak~G-~hy~----~-RIP~~GRDm~y~~~scD--ly~~gsg~evYRlNLEqGrfL~P~~~~ 174 (703)
T KOG2321|consen 103 SDDYSKSVFLQNDRTIEFHAKYG-RHYR----T-RIPKFGRDMKYHKPSCD--LYLVGSGSEVYRLNLEQGRFLNPFETD 174 (703)
T ss_pred ccchhhheEeecCceeeehhhcC-eeee----e-ecCcCCccccccCCCcc--EEEeecCcceEEEEccccccccccccc
Confidence 77777777778888887654332 1111 0 01112344555544443 34444455677788 889999999888
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC------CC-----ceEEEEEccCCCEEEEeecCCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GH-----WCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~-----~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
.+.+++|.+++.. .+|++|+.+|.|.+||.+.......+... .. .|+++.|+.+|-.+++|..
T Consensus 175 ~~~lN~v~in~~h--gLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts---- 248 (703)
T KOG2321|consen 175 SGELNVVSINEEH--GLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS---- 248 (703)
T ss_pred cccceeeeecCcc--ceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc----
Confidence 8999999987743 68999999999999998876655433221 11 4899999999999999986
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCC--CCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
.|.+.|||+++.+++..-.....-++..+.|.+. ++.+++ .....++|||-.+|+....+.... .++.+++-|+
T Consensus 249 ~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt~---~lND~C~~p~ 324 (703)
T KOG2321|consen 249 TGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPTS---DLNDFCFVPG 324 (703)
T ss_pred CCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEe-cchHHhhhcccccCCceeeccccC---CcCceeeecC
Confidence 8999999999988776654444446777888665 344444 355689999999999988886543 5899999999
Q ss_pred CCEEEEEEcCCcEEEEEccc
Q 001319 641 GNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~ 660 (1101)
+.+++++..+..+..|-+..
T Consensus 325 sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 325 SGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred CceEEEecCCCcceeEEccc
Confidence 99999999988887776543
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=148.59 Aligned_cols=237 Identities=18% Similarity=0.153 Sum_probs=150.9
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEecc--CcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|..+.-.......+.+.+.+.+.+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 178 L~~~D~dG~~~~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~--------------------l~~ 237 (427)
T PRK02889 178 LQISDADGQNAQSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV--------------------VAN 237 (427)
T ss_pred EEEECCCCCCceEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE--------------------eec
Confidence 5555543333444556888999999999999764443222 359999998886532 222
Q ss_pred CCccEEEEEEccCCCEEEE-EECCCeEEEEee--cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 405 VPISVSRVAWSPDGNYVGV-AFTKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las-~~~d~~i~vwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+.+.+.+|||||+.|+. .+.++...||.+ .++. .+ .+..+.+.+....|+|||+. +++++..++...+|.
T Consensus 238 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~---~lt~~~~~~~~~~wSpDG~~-l~f~s~~~g~~~Iy~ 312 (427)
T PRK02889 238 FKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LR---RLTQSSGIDTEPFFSPDGRS-IYFTSDRGGAPQIYR 312 (427)
T ss_pred CCCCccceEECCCCCEEEEEEccCCCceEEEEECCCCC-cE---ECCCCCCCCcCeEEcCCCCE-EEEEecCCCCcEEEE
Confidence 3345678999999999875 566777666655 4443 33 35556666778899999995 233444456667776
Q ss_pred --cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCC---eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 482 --LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 482 --~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
..+.....+..+.......+|+| ||++|+..+.++ .|.+||+.+++...... ........|+|||+.|+..
T Consensus 313 ~~~~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~--~~~~~~p~~spdg~~l~~~ 388 (427)
T PRK02889 313 MPASGGAAQRVTFTGSYNTSPRISP--DGKLLAYISRVGGAFKLYVQDLATGQVTALTD--TTRDESPSFAPNGRYILYA 388 (427)
T ss_pred EECCCCceEEEecCCCCcCceEECC--CCCEEEEEEccCCcEEEEEEECCCCCeEEccC--CCCccCceECCCCCEEEEE
Confidence 34433333332333344567766 667887766554 69999998776544322 2334678999999999988
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
+.. .+...+.+.+. ++...+.+..+.+ .+...+|+|
T Consensus 389 ~~~-~g~~~l~~~~~-~g~~~~~l~~~~g-~~~~p~wsp 424 (427)
T PRK02889 389 TQQ-GGRSVLAAVSS-DGRIKQRLSVQGG-DVREPSWGP 424 (427)
T ss_pred Eec-CCCEEEEEEEC-CCCceEEeecCCC-CCCCCccCC
Confidence 753 23456777777 4555555544333 455566665
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.1e-12 Score=149.24 Aligned_cols=237 Identities=14% Similarity=0.109 Sum_probs=150.6
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEec--cCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~--d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|-++.-.........+...+.+.+|||||++++.+... +..|.+||+.+++... +..
T Consensus 186 l~i~D~~g~~~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~--------------------l~~ 245 (433)
T PRK04922 186 LQVADSDGYNPQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL--------------------VAS 245 (433)
T ss_pred EEEECCCCCCceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE--------------------ecc
Confidence 444443333444555678899999999999976444322 3469999998876532 222
Q ss_pred CCccEEEEEEccCCCEEEE-EECCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce--EEE
Q 001319 405 VPISVSRVAWSPDGNYVGV-AFTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL--IKV 479 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las-~~~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~--v~i 479 (1101)
+.+...+++|||||+.|+. .+.+| .|.+||+.+++.. .+..+.......+|+|||+. ++++...++. |.+
T Consensus 246 ~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~----~lt~~~~~~~~~~~spDG~~-l~f~sd~~g~~~iy~ 320 (433)
T PRK04922 246 FRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLT----RLTNHFGIDTEPTWAPDGKS-IYFTSDRGGRPQIYR 320 (433)
T ss_pred CCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEE
Confidence 3344567899999998874 44554 5999999987643 34556666678999999994 2333334554 666
Q ss_pred EEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCC---eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+|..+.....+..+.......+|+| +|+.|+..+.++ .|.+||+.++.... +. +........|+|||++++..
T Consensus 321 ~dl~~g~~~~lt~~g~~~~~~~~Sp--DG~~Ia~~~~~~~~~~I~v~d~~~g~~~~-Lt-~~~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 321 VAASGGSAERLTFQGNYNARASVSP--DGKKIAMVHGSGGQYRIAVMDLSTGSVRT-LT-PGSLDESPSFAPNGSMVLYA 396 (433)
T ss_pred EECCCCCeEEeecCCCCccCEEECC--CCCEEEEEECCCCceeEEEEECCCCCeEE-CC-CCCCCCCceECCCCCEEEEE
Confidence 6643333444433334445678877 667777654432 68999987776553 32 22245567999999998887
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
+.. .+...|.+++... ...+.+..+.+ .+...+|+|
T Consensus 397 s~~-~g~~~L~~~~~~g-~~~~~l~~~~g-~~~~p~wsp 432 (433)
T PRK04922 397 TRE-GGRGVLAAVSTDG-RVRQRLVSADG-EVREPAWSP 432 (433)
T ss_pred Eec-CCceEEEEEECCC-CceEEcccCCC-CCCCCccCC
Confidence 653 3456788898854 34444443322 444556665
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.9e-12 Score=123.40 Aligned_cols=239 Identities=15% Similarity=0.219 Sum_probs=168.8
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCC--CeeEEEEecCCCCEEE-EEeCC------CcEEEEEe
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPP--ASTFLAFHPQDNNIIA-IGTED------STIHIYNV 875 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~--~i~~l~~s~~~~~~la-~g~~d------g~v~iwd~ 875 (1101)
....+++|+.|...++++.+...++|+.+..+....-..+.+ .+..+-|- .++|| +|+.+ +.|.|||=
T Consensus 6 ~~~lsvs~NQD~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR---~N~laLVGGg~~pky~pNkviIWDD 82 (346)
T KOG2111|consen 6 PKTLSVSFNQDHSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR---SNYLALVGGGSRPKYPPNKVIIWDD 82 (346)
T ss_pred CceeEEEEccCCceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh---hceEEEecCCCCCCCCCceEEEEec
Confidence 345569999999999999998899999876544332222222 23334443 23444 34333 47999996
Q ss_pred ecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC-ccccceEEeecCCCCCCCcceEEEcCCCCEEEE-
Q 001319 876 RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW-EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV- 953 (1101)
Q Consensus 876 ~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~- 953 (1101)
...+++.++. ...+|.++.++++ .+|+.- ...|+||..... +....+... ..+.+..+++-..+...||.
T Consensus 83 ~k~~~i~el~-f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~----~NPkGlC~~~~~~~k~~LafP 154 (346)
T KOG2111|consen 83 LKERCIIELS-FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETR----SNPKGLCSLCPTSNKSLLAFP 154 (346)
T ss_pred ccCcEEEEEE-eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecc----cCCCceEeecCCCCceEEEcC
Confidence 6667777765 6688999999876 455443 567999999843 322222221 11234444444444455555
Q ss_pred Ee-CCeEEEEEcCCcee--eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCc-EEEEeCCCCceeEeeCCCCcCCCccc
Q 001319 954 VH-ETQLAIYDASKMER--IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-IGVFDADTLRLRCYIAPSTYLSPSVL 1029 (1101)
Q Consensus 954 ~~-d~~i~v~d~~~~~~--~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~-i~vwd~~~~~~~~~~~~~~~~~~~~~ 1029 (1101)
|. -|.|+|-|+...+. ...+.. |.+.|.|++++-+|..|||++..|+ |||||..+|.++..++.
T Consensus 155 g~k~GqvQi~dL~~~~~~~p~~I~A---H~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RR--------- 222 (346)
T KOG2111|consen 155 GFKTGQVQIVDLASTKPNAPSIINA---HDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRR--------- 222 (346)
T ss_pred CCccceEEEEEhhhcCcCCceEEEc---ccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeec---------
Confidence 43 68999999986665 244444 4899999999999999999999997 89999999999998874
Q ss_pred CCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1030 NGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1030 ~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
..+...+.+++|+| +..+|+.+|+-|+|.||.+....
T Consensus 223 -G~d~A~iy~iaFSp-~~s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 223 -GVDRADIYCIAFSP-NSSWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred -CCchheEEEEEeCC-CccEEEEEcCCCeEEEEEeecCC
Confidence 23344566999999 79999999999999999998755
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.8e-13 Score=141.28 Aligned_cols=153 Identities=21% Similarity=0.378 Sum_probs=116.4
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceecc---------ccceeec--ccccCccccccccccCCccEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS---------KPFKIWD--MAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~---------~~~~~~d--~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
+..|+|+.|-|.+..++..+-.+|.+.++|..-.-.... ..|.+.. ......|+. .+.--++.|...
T Consensus 219 ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~~f~i~t~ksk~~rNPv~--~w~~~~g~in~f 296 (636)
T KOG2394|consen 219 KSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGDQFAILTSKSKKTRNPVA--RWHIGEGSINEF 296 (636)
T ss_pred ccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCCeeEEeeeeccccCCccc--eeEeccccccce
Confidence 478999999998887877888999999998632111110 0111111 111111111 122235589999
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~ 491 (1101)
+|||||++||+.+.||.++|||..+.+.+.. ++.--+...|++|||||+ ++++|++|--|.||. ..++.+..-.
T Consensus 297 ~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~---mkSYFGGLLCvcWSPDGK--yIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 297 AFSPDGKYLATVSQDGFLRIFDFDTQELLGV---MKSYFGGLLCVCWSPDGK--YIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred eEcCCCceEEEEecCceEEEeeccHHHHHHH---HHhhccceEEEEEcCCcc--EEEecCCcceEEEEEeccceEEEecc
Confidence 9999999999999999999999999776653 344556799999999999 899999999999999 8899999999
Q ss_pred cCCcCeEEEecc
Q 001319 492 GHEAPVYSICPH 503 (1101)
Q Consensus 492 ~h~~~v~~v~~~ 503 (1101)
||...|..|+|.
T Consensus 372 GHkSWVs~VaFD 383 (636)
T KOG2394|consen 372 GHKSWVSVVAFD 383 (636)
T ss_pred ccccceeeEeec
Confidence 999999999996
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.51 E-value=2.5e-11 Score=128.31 Aligned_cols=282 Identities=11% Similarity=0.119 Sum_probs=184.9
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
.......++|++|+ ++|.+ .+..+.|++..++..+.. .....+.++.|||.|.||.+
T Consensus 34 ~~~~~v~~~S~~G~-lfA~~-~~~~v~i~~~~~~~~~lt---------------------~~~~~~~~L~fSP~g~yL~T 90 (566)
T KOG2315|consen 34 SRPCNVFAYSNNGR-LFAYS-DNQVVKVFEIATLKVVLC---------------------VELKKTYDLLFSPKGNYLLT 90 (566)
T ss_pred CCcceeEEEcCCCc-EEEEE-cCCeEEEEEccCCcEEEE---------------------eccceeeeeeeccccccccc
Confidence 34578899999998 55664 677999999988754321 12227899999999999976
Q ss_pred E-----ECC-----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecC
Q 001319 424 A-----FTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH 493 (1101)
Q Consensus 424 ~-----~~d-----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h 493 (1101)
= ..+ -.+.+|+++++..... ...+...+ ++..|+.|.. ++.--..+.+++|+..+-....-+-|
T Consensus 91 ~e~~~i~~~~~~~~pn~~v~~vet~~~~s~-~q~k~Q~~--W~~qfs~dEs---l~arlv~nev~f~~~~~f~~~~~kl~ 164 (566)
T KOG2315|consen 91 WEPWAIYGPKNASNPNVLVYNVETGVQRSQ-IQKKMQNG--WVPQFSIDES---LAARLVSNEVQFYDLGSFKTIQHKLS 164 (566)
T ss_pred ccccccccCCCCCCCceeeeeeccceehhh-eehhhhcC--cccccccchh---hhhhhhcceEEEEecCCccceeeeee
Confidence 2 122 3478999999543321 11122222 6899999987 44444467899999433333233336
Q ss_pred CcCeEEEecccCCCccEEEE-----eccCCeEEEEecCCCCeeeecc---CCCCceEEEEEccCCCEEEE-eecCC----
Q 001319 494 EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLYSADGSRLFS-CGTSK---- 560 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~~-~~~~~---- 560 (1101)
...|..+.++|.+.-..+++ .+.-+.+++|.+........+. .-...-..+.|.+-|.-|++ .+.+-
T Consensus 165 ~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn 244 (566)
T KOG2315|consen 165 VSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTN 244 (566)
T ss_pred ccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCC
Confidence 77899999988755555554 3556789999876222111110 01112235677777764433 22221
Q ss_pred ---CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEE--EeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 561 ---DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 561 ---~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
-|+..+++.+++.......+ ...++|.++.|+|+++.+++ |-.-..+.|||++ +.++..+.. ++-+++
T Consensus 245 ~SYYGEq~Lyll~t~g~s~~V~L--~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df~e----gpRN~~ 317 (566)
T KOG2315|consen 245 ASYYGEQTLYLLATQGESVSVPL--LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDFPE----GPRNTA 317 (566)
T ss_pred ccccccceEEEEEecCceEEEec--CCCCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeCCC----CCccce
Confidence 24667888888844443333 33458999999999987766 4578899999986 455555432 245899
Q ss_pred EEecCCCEEEEEEcC---CcEEEEEcccc
Q 001319 636 RFSKEGNLLAVTTAD---NGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d---~~i~iwd~~~~ 661 (1101)
-|+|.|++++.++.+ |.|.+||+.+.
T Consensus 318 ~fnp~g~ii~lAGFGNL~G~mEvwDv~n~ 346 (566)
T KOG2315|consen 318 FFNPHGNIILLAGFGNLPGDMEVWDVPNR 346 (566)
T ss_pred EECCCCCEEEEeecCCCCCceEEEeccch
Confidence 999999999988764 78999999874
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.9e-12 Score=146.21 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=154.9
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|..+.-.........|...|.+.+|||||++|+.+.. .+..|.+||+.+++... +..
T Consensus 184 l~~~d~dg~~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~--------------------l~~ 243 (435)
T PRK05137 184 LAIMDQDGANVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQREL--------------------VGN 243 (435)
T ss_pred EEEECCCCCCcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEE--------------------eec
Confidence 55555444444555568889999999999997644432 24689999998876532 344
Q ss_pred CCccEEEEEEccCCCEEEE-EECCCe--EEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CCc--eEE
Q 001319 405 VPISVSRVAWSPDGNYVGV-AFTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK--LIK 478 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las-~~~d~~--i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d~--~v~ 478 (1101)
+.+.+.+.+|||||+.|+. .+.++. |.+||+.+++.. .+..+.+.....+|+|||+. ++..+ .++ .|.
T Consensus 244 ~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~Lt~~~~~~~~~~~spDG~~--i~f~s~~~g~~~Iy 317 (435)
T PRK05137 244 FPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----RLTDSPAIDTSPSYSPDGSQ--IVFESDRSGSPQLY 317 (435)
T ss_pred CCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----EccCCCCccCceeEcCCCCE--EEEEECCCCCCeEE
Confidence 5667788999999998874 444544 777888887643 35566667788999999995 44333 333 678
Q ss_pred EEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccC---CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+||..+.....+..+.+.+....|+| +|+.|+..+.+ ..|.+||+...... .+.. ...+..+.|+|||+.++.
T Consensus 318 ~~d~~g~~~~~lt~~~~~~~~~~~Sp--dG~~ia~~~~~~~~~~i~~~d~~~~~~~-~lt~-~~~~~~p~~spDG~~i~~ 393 (435)
T PRK05137 318 VMNADGSNPRRISFGGGRYSTPVWSP--RGDLIAFTKQGGGQFSIGVMKPDGSGER-ILTS-GFLVEGPTWAPNGRVIMF 393 (435)
T ss_pred EEECCCCCeEEeecCCCcccCeEECC--CCCEEEEEEcCCCceEEEEEECCCCceE-eccC-CCCCCCCeECCCCCEEEE
Confidence 88865655566655555666778877 66777765543 36788887554433 2222 234678899999999987
Q ss_pred eecCCCCC--ceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 556 CGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 556 ~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
.+...... ..++++|+..+.. +.+.. .. .+...+|+|
T Consensus 394 ~~~~~~~~~~~~L~~~dl~g~~~-~~l~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 394 FRQTPGSGGAPKLYTVDLTGRNE-REVPT-PG-DASDPAWSP 432 (435)
T ss_pred EEccCCCCCcceEEEEECCCCce-EEccC-CC-CccCcccCC
Confidence 66432221 4688888876554 33332 11 344455655
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=99.49 E-value=4.3e-09 Score=108.72 Aligned_cols=403 Identities=12% Similarity=0.091 Sum_probs=228.6
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEE----E--eccCcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV----G--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llas----g--~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+|..+.......+...|-+-|+--.|+|||+.+..+ | ...+.+.+.+.+.|+..+.
T Consensus 61 lWe~slk~g~~~ritS~lGVvnn~kf~pdGrkvaf~rv~~~ss~~taDly~v~~e~Ge~kRi------------------ 122 (668)
T COG4946 61 LWEYSLKDGKPLRITSGLGVVNNPKFSPDGRKVAFSRVMLGSSLQTADLYVVPSEDGEAKRI------------------ 122 (668)
T ss_pred HHHhhhccCCeeEEecccceeccccCCCCCcEEEEEEEEecCCCccccEEEEeCCCCcEEEE------------------
Confidence 888888888888888899999999999999965432 1 2234566777677765431
Q ss_pred ccccCCccEE-EEEEccCCCEEEEEECCCe----EEEEeecCCcc-cccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 401 IFKDVPISVS-RVAWSPDGNYVGVAFTKHL----IQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 401 ~~~~h~~~v~-~~~~spdg~~las~~~d~~----i~vwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
++-| ...+ -+-|+|||+.|++...-.- -.+|.+..... .. . -.-++.+.+.+- ||. ++.|-.-
T Consensus 123 TyfG--r~fT~VaG~~~dg~iiV~TD~~tPF~q~~~lYkv~~dg~~~e---~--LnlGpathiv~~-dg~---ivigRnt 191 (668)
T COG4946 123 TYFG--RRFTRVAGWIPDGEIIVSTDFHTPFSQWTELYKVNVDGIKTE---P--LNLGPATHIVIK-DGI---IVIGRNT 191 (668)
T ss_pred EEec--cccceeeccCCCCCEEEEeccCCCcccceeeeEEccCCceee---e--ccCCceeeEEEe-CCE---EEEccCc
Confidence 1222 2333 3459999999988754321 22333332111 11 1 123445555553 443 3332211
Q ss_pred c------------eEEEEE--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCc
Q 001319 475 K------------LIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW 540 (1101)
Q Consensus 475 ~------------~v~iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~ 540 (1101)
- .=++|- ..|+....+..-.+.|++-.+.. + +.-+....||.=.+|..+-...-......-..
T Consensus 192 ydLP~WK~YkGGtrGklWis~d~g~tFeK~vdl~~~vS~PmIV~--~-RvYFlsD~eG~GnlYSvdldGkDlrrHTnFtd 268 (668)
T COG4946 192 YDLPHWKGYKGGTRGKLWISSDGGKTFEKFVDLDGNVSSPMIVG--E-RVYFLSDHEGVGNLYSVDLDGKDLRRHTNFTD 268 (668)
T ss_pred ccCcccccccCCccceEEEEecCCcceeeeeecCCCcCCceEEc--c-eEEEEecccCccceEEeccCCchhhhcCCchh
Confidence 1 124565 33333333333333343322211 1 23333444554444543322221111111112
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc---c---CCc-ceEE---E-EEeC-CCCEEEEEeCCCc
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKK-SNGV---V-QFDT-TQNHFLAVGEDSQ 608 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~---~~~-~v~~---~-~~~~-~~~~l~~~~~dg~ 608 (1101)
..+--.+.||+.++... .|.|+++|.++.++...--+ . ... .+.- + .|++ +|++++..+. |+
T Consensus 269 YY~R~~nsDGkrIvFq~-----~GdIylydP~td~lekldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-Gk 342 (668)
T COG4946 269 YYPRNANSDGKRIVFQN-----AGDIYLYDPETDSLEKLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GK 342 (668)
T ss_pred ccccccCCCCcEEEEec-----CCcEEEeCCCcCcceeeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-Cc
Confidence 33334567999988754 56799999987665433222 1 000 0110 1 1333 4667766654 67
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC-cEEEEEccccccccccccCCCcccccCcceeeeeee
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN-GFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~-~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1101)
..+.+...+-.++.-. ...|.-..+..+++-++.|..|| .+-|+|..++.. +.+
T Consensus 343 aFi~~~~~~~~iqv~~----~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~--kr~------------------- 397 (668)
T COG4946 343 AFIMRPWDGYSIQVGK----KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV--KRI------------------- 397 (668)
T ss_pred EEEECCCCCeeEEcCC----CCceEEEEEccCCcceEEeccCCceEEEEecCCceE--EEe-------------------
Confidence 7777766555444322 22466677777888899999998 899999887621 111
Q ss_pred ccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 688 SASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 688 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
...-+.|.++..+++|+.++++.....+-+.|++
T Consensus 398 ----------------------------------------------e~~lg~I~av~vs~dGK~~vvaNdr~el~vidid 431 (668)
T COG4946 398 ----------------------------------------------EKDLGNIEAVKVSPDGKKVVVANDRFELWVIDID 431 (668)
T ss_pred ----------------------------------------------eCCccceEEEEEcCCCcEEEEEcCceEEEEEEec
Confidence 1134567788888898888887777777666654
Q ss_pred CCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC----eEEEEECCCceEEEEee
Q 001319 768 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG----KISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg----~i~vwd~~~~~~~~~~~ 842 (1101)
.. ....... ...+-|+.++|+|+++++|.+- +| .|+++|+.+++......
T Consensus 432 ng----------------------nv~~idk---S~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT 486 (668)
T COG4946 432 NG----------------------NVRLIDK---SEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTT 486 (668)
T ss_pred CC----------------------CeeEecc---cccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecC
Confidence 32 2111111 2556789999999999999996 54 59999999888765443
Q ss_pred CCCCCeeEEEEecCCCCEEEEEe
Q 001319 843 SPPPASTFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 843 ~~~~~i~~l~~s~~~~~~la~g~ 865 (1101)
..+-=.+-+|.| ++++|..-+
T Consensus 487 -~ta~DfsPaFD~-d~ryLYfLs 507 (668)
T COG4946 487 -PTAYDFSPAFDP-DGRYLYFLS 507 (668)
T ss_pred -CcccccCcccCC-CCcEEEEEe
Confidence 233345567888 787776544
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.48 E-value=6e-11 Score=127.76 Aligned_cols=512 Identities=10% Similarity=0.128 Sum_probs=299.9
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
||.+.|.-+.|+.+.+. |.+...+|.|.+|-+-.|+-... .+-......|.+++|..||..|
T Consensus 69 GH~~sV~vvTWNe~~QK-LTtSDt~GlIiVWmlykgsW~EE-----------------MiNnRnKSvV~SmsWn~dG~kI 130 (1189)
T KOG2041|consen 69 GHNASVMVVTWNENNQK-LTTSDTSGLIIVWMLYKGSWCEE-----------------MINNRNKSVVVSMSWNLDGTKI 130 (1189)
T ss_pred cCcceEEEEEecccccc-ccccCCCceEEEEeeecccHHHH-----------------HhhCcCccEEEEEEEcCCCcEE
Confidence 59999999999999885 47888999999999988764321 2234456789999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE--------e---
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN--------F--- 490 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~--------~--- 490 (1101)
+....||.|.|=.+++.+.... .+++.. ...+.|++|.+ .++.+-..|.+.++|..|.-... .
T Consensus 131 cIvYeDGavIVGsvdGNRIwgK--eLkg~~--l~hv~ws~D~~--~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~ 204 (1189)
T KOG2041|consen 131 CIVYEDGAVIVGSVDGNRIWGK--ELKGQL--LAHVLWSEDLE--QALFKKANGETHLYDNQGNFERKLEKDCEVNGTGI 204 (1189)
T ss_pred EEEEccCCEEEEeeccceecch--hcchhe--ccceeecccHH--HHHhhhcCCcEEEecccccHHHhhhhceEEeeeee
Confidence 9999999999988887654332 333322 34789999998 56667778999999955532111 1
Q ss_pred -ecCCcCeEEEeccc------CCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC-
Q 001319 491 -EGHEAPVYSICPHH------KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG- 562 (1101)
Q Consensus 491 -~~h~~~v~~v~~~~------~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~- 562 (1101)
......|..+.|.. .++...++.+-..|.+.+..-.+......+... ..+....|+++|..|++++.+.+.
T Consensus 205 ~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg-m~~vgakWnh~G~vLAvcG~~~da~ 283 (1189)
T KOG2041|consen 205 FSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG-MKIVGAKWNHNGAVLAVCGNDSDAD 283 (1189)
T ss_pred ecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc-cEeecceecCCCcEEEEccCccccc
Confidence 11112355555532 236678999999999998876665555554433 678899999999999999875432
Q ss_pred ---C-ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 563 ---D-SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 563 ---~-~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
+ +.|+++. .-|+.+.+++.... .|+.++|-..|-.++.+ .|+.|++=+++..-.-..+. ..+.+-
T Consensus 284 ~~~d~n~v~Fys-p~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyfanIRP~ykWgy~e--------~TvVy~ 352 (1189)
T KOG2041|consen 284 EPTDSNKVHFYS-PYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYFANIRPEYKWGYIE--------ETVVYV 352 (1189)
T ss_pred CccccceEEEec-cchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEEEeecccceEEEee--------eEEEEE
Confidence 2 2455554 45777777776655 78889998776555544 56777776665422111111 011111
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
..+.-+ ..-.|.+||..+..+.++...+.. ++++..+-=.+......+. +... ..
T Consensus 353 y~~~e~----p~y~i~Fwdtk~nek~vK~V~~~~---------~~a~~~ehCvL~~~~d~~~--i~e~----------s~ 407 (1189)
T KOG2041|consen 353 YQKEEL----PQYGIMFWDTKTNEKTVKTVTHFE---------NMAFYREHCVLINRQDDGV--IPEY----------ST 407 (1189)
T ss_pred EccCCC----cceEEEEEecccChhhhhhhccee---------ehheecccEEEEeccccCC--Ccch----------hh
Confidence 111100 012355677666655555544321 1111111111100000000 0000 00
Q ss_pred EEeCCCeEEEEcCCCCC-----CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCC---eeeeccccccccCC
Q 001319 719 IVDSGQCRLVTMPESTD-----TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK---ATASAVPQHWLPSS 790 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~-----~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~---~~~~~~~~~~~~~~ 790 (1101)
+...+....+.+-...+ ..-.|......-++..++.++.+ .+.+|.+...++...-. .........=+..+
T Consensus 408 le~~~~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~Ddtp~ 486 (1189)
T KOG2041|consen 408 LENRSRVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHGDDTPE 486 (1189)
T ss_pred hhcccceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccCCCCcc
Confidence 01111111111111111 11223333334455555555544 67788876554321100 00000111111112
Q ss_pred c----cceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEe
Q 001319 791 G----LLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 791 ~----~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~ 865 (1101)
| .+-....+..+..++|.+++.+ .+++..+. .|.|.-|.+.+......... +..|..++..- +...+|+-.
T Consensus 487 ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv~l~n~y~~-n~~~y~~~lNC-nstRlAiId 562 (1189)
T KOG2041|consen 487 GAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNVVLTNSYPV-NPSIYSIKLNC-NSTRLAIID 562 (1189)
T ss_pred chhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecceeeeecccc-CchheeEeecc-Ccchhhhhh
Confidence 2 1111112223578899999886 46777776 79999999988777666543 56788899888 778888888
Q ss_pred CCCcEEEEEee---cceEEE-eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 866 EDSTIHIYNVR---VDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 866 ~dg~v~iwd~~---~~~~~~-~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
.-|.+.+.|+. +|..+. .+......|+++.|..|+..|..--....+.+++-..
T Consensus 563 ~~gv~tf~dLd~d~~g~ql~~~~~~errDVWd~~Wa~dNp~llAlmeKtrmyifrgnd 620 (1189)
T KOG2041|consen 563 LVGVVTFQDLDYDFDGDQLKLIYTSERRDVWDYEWAQDNPNLLALMEKTRMYIFRGND 620 (1189)
T ss_pred hhceeeeeecccccCcceeeeeehhhhhhhhhhhhccCCchHHhhhhhceEEEecCcC
Confidence 88999998887 343333 4445567799999988876555444444466665443
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.47 E-value=5.1e-10 Score=123.10 Aligned_cols=208 Identities=16% Similarity=0.219 Sum_probs=138.6
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCC-ceEEEE---ee----------CCCCCeeEEEEecCCCCEEEEEe-CCC
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVMTT---FM----------SPPPASTFLAFHPQDNNIIAIGT-EDS 868 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~~~---~~----------~~~~~i~~l~~s~~~~~~la~g~-~dg 868 (1101)
....++++|++++|+++. +|.|.++++.. +..... +. .......++.|+| +++++++.. ...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~p-dg~~v~v~dlG~D 166 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSP-DGRFVYVPDLGAD 166 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-T-TSSEEEEEETTTT
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECC-CCCEEEEEecCCC
Confidence 355788899999888885 78899999876 443332 11 1234578999999 888777654 445
Q ss_pred cEEEEEeecce--EE--Eeec-cCCCCeeEEEEcCCCCEEEEE-eCCCcEEEEECC--CCccccceEEeecCC-CCC-CC
Q 001319 869 TIHIYNVRVDE--VK--SKLK-GHQKRITGLAFSTSLNILVSS-GADAQLCVWSID--TWEKRKSVTIHIPAG-KTP-TG 938 (1101)
Q Consensus 869 ~v~iwd~~~~~--~~--~~~~-~h~~~V~~l~~s~d~~~l~s~-s~Dg~v~lwd~~--~~~~~~~~~~~~~~~-~~~-~~ 938 (1101)
.|++|++.... +. ..+. ........++|+||++++.+. -.+++|.++++. .+.......+..... ... ..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999998654 32 2222 334567899999999987655 457789999998 443333333332211 111 25
Q ss_pred cceEEEcCCCCEEEEEe--CCeEEEEEcC--Cc--eeeeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeC--
Q 001319 939 DTRVQFNADQVRMLVVH--ETQLAIYDAS--KM--ERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDA-- 1009 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~--d~~i~v~d~~--~~--~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~-- 1009 (1101)
...++++|||++|.++. .+.|.+|+++ ++ +.+..+... ....+.++++|||++|+++. .++.|.+|++
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~---G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTG---GKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEES---SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCC---CCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 77899999999999965 6789999994 23 333444332 45589999999999999877 5678999876
Q ss_pred CCCceeEe
Q 001319 1010 DTLRLRCY 1017 (1101)
Q Consensus 1010 ~~~~~~~~ 1017 (1101)
++|.+...
T Consensus 324 ~tG~l~~~ 331 (345)
T PF10282_consen 324 DTGKLTPV 331 (345)
T ss_dssp TTTEEEEE
T ss_pred CCCcEEEe
Confidence 56766544
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.46 E-value=2.5e-10 Score=120.85 Aligned_cols=355 Identities=11% Similarity=0.103 Sum_probs=217.1
Q ss_pred CeEEEEecCCCCeeeeccC---CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEe
Q 001319 518 GKIKAWLYDTMGSRVDYDA---PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1101)
..+.+|............. ....++..++|++|++++.+. +..++|++..++..+.+.... .+..+-|+
T Consensus 11 e~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S~~G~lfA~~~-----~~~v~i~~~~~~~~~lt~~~~---~~~~L~fS 82 (566)
T KOG2315|consen 11 EGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYSNNGRLFAYSD-----NQVVKVFEIATLKVVLCVELK---KTYDLLFS 82 (566)
T ss_pred ceeEEeccCCccccccccccCCCCCcceeEEEcCCCcEEEEEc-----CCeEEEEEccCCcEEEEeccc---eeeeeeec
Confidence 3466676544222222211 244578899999999999886 678999999888644444432 46778999
Q ss_pred CCCCEEEEE-----eC-----CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccc
Q 001319 595 TTQNHFLAV-----GE-----DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1101)
Q Consensus 595 ~~~~~l~~~-----~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 664 (1101)
|-|++|.+- .. .-.+.+|+++++.....+...... -++..|+.|..+.+ --..+.+.+|++.+....
T Consensus 83 P~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~--~W~~qfs~dEsl~a-rlv~nev~f~~~~~f~~~ 159 (566)
T KOG2315|consen 83 PKGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN--GWVPQFSIDESLAA-RLVSNEVQFYDLGSFKTI 159 (566)
T ss_pred ccccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc--Ccccccccchhhhh-hhhcceEEEEecCCccce
Confidence 999988762 12 235779999996655555443332 26888988875433 233567889987653111
Q ss_pred cccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEE
Q 001319 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLL 744 (1101)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 744 (1101)
...+ |...|+.+.
T Consensus 160 ~~kl-------------------------------------------------------------------~~~~i~~f~ 172 (566)
T KOG2315|consen 160 QHKL-------------------------------------------------------------------SVSGITMLS 172 (566)
T ss_pred eeee-------------------------------------------------------------------eccceeeEE
Confidence 1111 334445555
Q ss_pred eecCc-ccEEE------eecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 745 YTNSA-VGLLA------LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 745 ~s~~~-~~l~~------~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
++|.+ ...++ .+.-+.+++|.+....+...-.. ..+ ....-..+.|++-|.
T Consensus 173 lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~------------------ksF----Fkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 173 LSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVAN------------------KSF----FKADKVQMKWNKLGT 230 (566)
T ss_pred ecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhh------------------ccc----cccceeEEEeccCCc
Confidence 55542 11111 23346788887652211100000 000 111122345555554
Q ss_pred eE---EEEc-C---------CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEE--EEeCCCcEEEEEeecceEEE
Q 001319 818 YV---MSAT-G---------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA--IGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 818 ~l---a~~~-d---------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la--~g~~dg~v~iwd~~~~~~~~ 882 (1101)
-| ++.. | .++++++++...+.-.+. ..++|.++.|+| +++-++ .|-.-..+.|||++ +.++.
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~-k~GPVhdv~W~~-s~~EF~VvyGfMPAkvtifnlr-~~~v~ 307 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLL-KEGPVHDVTWSP-SGREFAVVYGFMPAKVTIFNLR-GKPVF 307 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEecCceEEEecC-CCCCceEEEECC-CCCEEEEEEecccceEEEEcCC-CCEeE
Confidence 22 1211 2 358888888444444443 378999999999 665443 45567789999976 55555
Q ss_pred eeccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe----
Q 001319 883 KLKGHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---- 955 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---- 955 (1101)
.+ -.++=+++-|+|.|++++.+|.+ |.|.|||+.+.+++..... ...+-+.|+|||.+++++.
T Consensus 308 df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a--------~~tt~~eW~PdGe~flTATTaPR 377 (566)
T KOG2315|consen 308 DF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA--------ANTTVFEWSPDGEYFLTATTAPR 377 (566)
T ss_pred eC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc--------CCceEEEEcCCCcEEEEEecccc
Confidence 54 45777899999999999998876 7899999999766544332 4567789999999999842
Q ss_pred ---CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc
Q 001319 956 ---ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 990 (1101)
Q Consensus 956 ---d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 990 (1101)
|+.++||+... ..+..... .++...+.|-|
T Consensus 378 lrvdNg~KiwhytG-~~l~~~~f----~sEL~qv~W~P 410 (566)
T KOG2315|consen 378 LRVDNGIKIWHYTG-SLLHEKMF----KSELLQVEWRP 410 (566)
T ss_pred EEecCCeEEEEecC-ceeehhhh----hHhHhheeeee
Confidence 78999999863 33333222 12455566654
|
|
| >KOG2659 consensus LisH motif-containing protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=7.2e-13 Score=126.10 Aligned_cols=169 Identities=18% Similarity=0.251 Sum_probs=128.7
Q ss_pred cchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC---------HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHH
Q 001319 3 SLSRELVFLILQFLEEEKFKESVHKLEKESGFFFN---------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIF 73 (1101)
Q Consensus 3 ~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~---------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~ 73 (1101)
..++++.|||++||...||.++|..+.+|+|+... -..+|.+|..|+.++|++.++++.+..-+.... +.
T Consensus 24 ~~~~d~n~LVmnylv~eg~~EaA~~Fa~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~PeiLd~n~~-l~ 102 (228)
T KOG2659|consen 24 VMREDLNRLVMNYLVHEGYVEAAEKFAKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPEILDTNRE-LF 102 (228)
T ss_pred cchhhHHHHHHHHHHhccHHHHHHHhccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChHHHccchh-HH
Confidence 45789999999999999999999999999999771 568999999999999999999996554333334 89
Q ss_pred HHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC--chHHHHHHHHHHHhhc
Q 001319 74 FEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD--TKTARGIMLIELKKLI 151 (1101)
Q Consensus 74 ~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~--~~~~r~~l~~~l~~~~ 151 (1101)
|.+++|+++||+.++..++|++|++++|.|+...+++.++.|...|..--++.....+ ... ....|.++.+.+.+.|
T Consensus 103 F~Lq~q~lIEliR~~~~eeal~F~q~~LA~~a~e~~~~~~elE~~l~lLvf~~~~~sp-~~~l~~~s~R~kvA~~vN~ai 181 (228)
T KOG2659|consen 103 FHLQQLHLIELIREGKTEEALEFAQTKLAPFAEENPKKMEELERTLALLVFELSQESP-SAELLSQSLRQKVASEVNSAI 181 (228)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcCCcccCc-HHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888888888888877755444222211 111 2345777777776655
Q ss_pred ccCcccccccCCCCCC-hHHHHHHHHHHHHHH
Q 001319 152 EANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1101)
Q Consensus 152 ~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1101)
-...- .+ ..+|..|++.-+..|
T Consensus 182 L~~~~---------~~~~~~l~~llk~~~~~~ 204 (228)
T KOG2659|consen 182 LASQE---------HESEPKLPFLLKLISWAQ 204 (228)
T ss_pred HHHhc---------ccccchHHHHHHHHHHHH
Confidence 33111 11 347888886555555
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.45 E-value=4.3e-11 Score=124.74 Aligned_cols=283 Identities=12% Similarity=0.089 Sum_probs=189.2
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
-++..++|||.|++| ++. .-..|.+|.-.....+.. --...|..+.|||.++||.+=
T Consensus 33 ~p~~~~~~SP~G~~l-~~~-~~~~V~~~~g~~~~~l~~---------------------~~~~~V~~~~fSP~~kYL~tw 89 (561)
T COG5354 33 WPVAYVSESPLGTYL-FSE-HAAGVECWGGPSKAKLVR---------------------FRHPDVKYLDFSPNEKYLVTW 89 (561)
T ss_pred cchhheeecCcchhe-ehh-hccceEEccccchhheee---------------------eecCCceecccCcccceeeee
Confidence 478999999999965 543 455799998776553321 123479999999999999985
Q ss_pred ECC---------------CeEEEEeecCCcccccceeeecccCc--EE-EEEEecCCCceEEEEecCCceEEEEEcCCce
Q 001319 425 FTK---------------HLIQLYSYAGSNDLRQHSQIDAHVGA--VN-DLAFAYPNKLLCVVTCGDDKLIKVWELSGRK 486 (1101)
Q Consensus 425 ~~d---------------~~i~vwd~~~~~~~~~~~~l~~h~~~--V~-~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~ 486 (1101)
+.. ..+.+||..+|..+. .+.+...+ .+ -+.|+-|+++ ++=- ....++|++.++..
T Consensus 90 ~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~---sf~~~~q~~~~Wp~~k~s~~D~y--~ARv-v~~sl~i~e~t~n~ 163 (561)
T COG5354 90 SREPIIEPEIEISPFTSKNNVFVWDIASGMIVF---SFNGISQPYLGWPVLKFSIDDKY--VARV-VGSSLYIHEITDNI 163 (561)
T ss_pred ccCCccChhhccCCccccCceeEEeccCceeEe---eccccCCcccccceeeeeecchh--hhhh-ccCeEEEEecCCcc
Confidence 433 349999999998776 34444443 44 6889999883 3322 34568888854432
Q ss_pred e-EEeecC-CcCeEEEecccCCCccEEEE-----eccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec-
Q 001319 487 L-FNFEGH-EAPVYSICPHHKENIQFIFS-----TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT- 558 (1101)
Q Consensus 487 ~-~~~~~h-~~~v~~v~~~~~~~~~~l~s-----~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~- 558 (1101)
. ..+..- ...|....|+|.+++..|+. .+.++++++|.+.....+.....-...-..+.|.+.|+++++-..
T Consensus 164 ~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t 243 (561)
T COG5354 164 EEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMT 243 (561)
T ss_pred ccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEE
Confidence 1 112111 24577777888766666554 456789999998866555443333333456788888988775432
Q ss_pred ------CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEE--eCCCcEEEEECCCCeeeEeeccCCCCC
Q 001319 559 ------SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 559 ------~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+.-++..++++++....+.... ... .+|...+|.|.++.+++. -.+-.+.++|++.. +...+...
T Consensus 244 ~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~-~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N-l~~~~Pe~---- 316 (561)
T COG5354 244 HTKSNKSYFGESNLYLLRITERSIPVEK-DLK-DPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN-LRFYFPEQ---- 316 (561)
T ss_pred eeecccceeccceEEEEeecccccceec-ccc-ccceeeeecccCCceeEEecccccceeecccccc-eEEecCCc----
Confidence 1123567888888744433332 223 378999999998887764 47889999999866 44444332
Q ss_pred CCCeeEEecCCCEEEEEEcC---CcEEEEEcccccc
Q 001319 631 NLPRLRFSKEGNLLAVTTAD---NGFKILANAIGLR 663 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d---~~i~iwd~~~~~~ 663 (1101)
.=+.+.|+|.+++++.++-| |.+.+||..+...
T Consensus 317 ~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~ 352 (561)
T COG5354 317 KRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFK 352 (561)
T ss_pred ccccccccCcccEEEEecCCccccceEEeccCCceE
Confidence 23678899999999998765 6788888766533
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.44 E-value=1.4e-11 Score=124.25 Aligned_cols=271 Identities=11% Similarity=0.127 Sum_probs=190.9
Q ss_pred CCcEEEEEEecCCceEEEEEe-ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGS-SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~-~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
...|.+++|--|++.=+..+. .|..+............. .|+.. .....+..|..++.. || .|.
T Consensus 55 ~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~----~~~~~---------~~~l~~~~I~gl~~~-dg-~Li 119 (412)
T KOG3881|consen 55 LDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSS----LDDAK---------TVSLGTKSIKGLKLA-DG-TLI 119 (412)
T ss_pred hhhhhhheeecCCceeEeeccccCcccccccccCCccccc----ccccc---------ccccccccccchhhc-CC-EEE
Confidence 457888888877654333343 555666665544433221 12221 234456677777765 34 566
Q ss_pred EEECCCeEEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecCC--ceEEEEE-cCCceeEEeecC-----
Q 001319 423 VAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEGH----- 493 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d--~~v~iwd-~~~~~~~~~~~h----- 493 (1101)
+|-.+|.+.+|..+.+..-. ....+..+ ..+..+.-++...+ ++++||.. ..+++|| ...+.+.+-+.-
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~-Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L 197 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPY-IVATGGKENINELKIWDLEQSKQIWSAKNVPNDRL 197 (412)
T ss_pred EEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCc-eEecCchhcccceeeeecccceeeeeccCCCCccc
Confidence 77889999999998554211 11123333 45777777776665 67779999 8899999 555544332211
Q ss_pred --C--cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 494 --E--APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 494 --~--~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
. -.++++.|.+..+...+++++.-+.+|+||...+.. ...+.....+++++...|+|++++++.. .+.+..
T Consensus 198 ~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~----~g~l~~ 273 (412)
T KOG3881|consen 198 GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNT----KGQLAK 273 (412)
T ss_pred cceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecc----cchhhe
Confidence 1 235567777654468999999999999999987654 4567777889999999999999999865 788999
Q ss_pred EeCCCCeeEEE-ecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 569 WNESEGTIKRT-YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 569 wd~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
+|++.++.... +.+..+ .+..+..+|.+++++++|-|+.|+|+|+.+.+++........ .+++.+.+
T Consensus 274 FD~r~~kl~g~~~kg~tG-sirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~---lt~il~~~ 341 (412)
T KOG3881|consen 274 FDLRGGKLLGCGLKGITG-SIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSR---LTFILLRD 341 (412)
T ss_pred ecccCceeeccccCCccC-CcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhcc---ccEEEecC
Confidence 99999998887 666666 899999999999999999999999999999777766655433 45665544
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.3e-10 Score=119.48 Aligned_cols=360 Identities=11% Similarity=0.128 Sum_probs=227.6
Q ss_pred EEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEE
Q 001319 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 521 ~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
.+|...+......+....-++..+++||.|.+|++.. ...|.+|+...+..+..+.. ..+.-+.|+|.+++|
T Consensus 15 ~f~~~~s~~~~~~~~~~~~p~~~~~~SP~G~~l~~~~-----~~~V~~~~g~~~~~l~~~~~---~~V~~~~fSP~~kYL 86 (561)
T COG5354 15 VFWNSQSEVIHTRFESENWPVAYVSESPLGTYLFSEH-----AAGVECWGGPSKAKLVRFRH---PDVKYLDFSPNEKYL 86 (561)
T ss_pred EeecCccccccccccccCcchhheeecCcchheehhh-----ccceEEccccchhheeeeec---CCceecccCccccee
Confidence 3465555444444444566789999999999999875 44689999887765555543 257789999999999
Q ss_pred EEEeCC---------------CcEEEEECCCCeeeEeeccCCCCCCCC-eeEEecCCCEEEEEEcCCcEEEEEccccccc
Q 001319 601 LAVGED---------------SQIKFWDMDNVNILTSTDAEGGLPNLP-RLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1101)
Q Consensus 601 ~~~~~d---------------g~i~iwd~~~~~~~~~~~~~~~~~~v~-~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 664 (1101)
.+-... ..+.+||..+|.++..+.......... -+.|+-+..++|-. ....+.|+++ ++.-.
T Consensus 87 ~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARv-v~~sl~i~e~-t~n~~ 164 (561)
T COG5354 87 VTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARV-VGSSLYIHEI-TDNIE 164 (561)
T ss_pred eeeccCCccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhh-ccCeEEEEec-CCccc
Confidence 986543 359999999999999887665432234 67888888777655 3457888886 32111
Q ss_pred cccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEE
Q 001319 665 LRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLL 744 (1101)
Q Consensus 665 ~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 744 (1101)
.+++... ....|....
T Consensus 165 -----~~p~~~l-----------------------------------------------------------r~~gi~dFs 180 (561)
T COG5354 165 -----EHPFKNL-----------------------------------------------------------RPVGILDFS 180 (561)
T ss_pred -----cCchhhc-----------------------------------------------------------cccceeeEE
Confidence 1111111 112223333
Q ss_pred eecCcc--cEEE-----eecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 745 YTNSAV--GLLA-----LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 745 ~s~~~~--~l~~-----~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
++|.+. .|+. .+..+.+++|.+..... +....+ ..-.-..+.|.+.|+
T Consensus 181 isP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~---------------------l~tk~l----fk~~~~qLkW~~~g~ 235 (561)
T COG5354 181 ISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSV---------------------LVTKNL----FKVSGVQLKWQVLGK 235 (561)
T ss_pred ecCCCCCceEEEEccccCCCCcEEEEEEccCCCe---------------------eeeeee----EeecccEEEEecCCc
Confidence 333321 1111 23346666666542111 000000 111123456666676
Q ss_pred eEEEE------------cCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEE--eCCCcEEEEEeecceEEEe
Q 001319 818 YVMSA------------TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG--TEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 818 ~la~~------------~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g--~~dg~v~iwd~~~~~~~~~ 883 (1101)
++..- +...++++++....+.... .-.++|..++|.| .++.+++. -.+..+.++|+... +..
T Consensus 236 ~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p-~S~~F~vi~g~~pa~~s~~~lr~N-l~~- 311 (561)
T COG5354 236 YLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEP-LSSRFAVISGYMPASVSVFDLRGN-LRF- 311 (561)
T ss_pred eEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecc-cCCceeEEecccccceeecccccc-eEE-
Confidence 55432 1245888888743333332 4578999999999 55554443 47889999998866 333
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-----
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----- 955 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----- 955 (1101)
......=..+.|+|.+++++.++.| |.|-+||......... ...+ ...+-+.|+||+.++.+..
T Consensus 312 -~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~----~~~~---~n~s~~~wspd~qF~~~~~ts~k~ 383 (561)
T COG5354 312 -YFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAG----AFNG---LNTSYCDWSPDGQFYDTDTTSEKL 383 (561)
T ss_pred -ecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEE----Eeec---CCceEeeccCCceEEEecCCCccc
Confidence 3345556778999999999998877 6799999987543221 2222 4556678999999988732
Q ss_pred --CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 956 --ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 956 --d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
|..+.|||+..-.. ...+.+.|.|.|++..+.+.+.
T Consensus 384 ~~Dn~i~l~~v~g~~~-----------fel~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 384 RVDNSIKLWDVYGAKV-----------FELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ccCcceEEEEecCchh-----------hhhhhccccCCcccceeeccCC
Confidence 67899999875432 2456788888899888777665
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.44 E-value=2.2e-11 Score=128.41 Aligned_cols=284 Identities=18% Similarity=0.219 Sum_probs=193.4
Q ss_pred cccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCC-cCeEEEecccCCCccEEEEeccCCeEEEEecCC
Q 001319 449 AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 449 ~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~-~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
+|...-+.|..+|||++ ++++|..--.|++||...-.+ .|..|. ..+..+.+..+ |-..++.-..|.+|.+-.-
T Consensus 49 e~p~ast~ik~s~DGqY-~lAtG~YKP~ikvydlanLSL-KFERhlDae~V~feiLsD-D~SK~v~L~~DR~IefHak-- 123 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQY-LLATGTYKPQIKVYDLANLSL-KFERHLDAEVVDFEILSD-DYSKSVFLQNDRTIEFHAK-- 123 (703)
T ss_pred CCccccceeEecCCCcE-EEEecccCCceEEEEccccee-eeeecccccceeEEEecc-chhhheEeecCceeeehhh--
Confidence 57778899999999997 788999999999999443333 233332 33333322211 3234445556777765421
Q ss_pred CCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC
Q 001319 528 MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1101)
Q Consensus 528 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1101)
.+....+.. ......|+++.-..-|++++. ...|+-++++.|+.+..|..... .++++.+++-...|++|+.+|
T Consensus 124 ~G~hy~~RI-P~~GRDm~y~~~scDly~~gs----g~evYRlNLEqGrfL~P~~~~~~-~lN~v~in~~hgLla~Gt~~g 197 (703)
T KOG2321|consen 124 YGRHYRTRI-PKFGRDMKYHKPSCDLYLVGS----GSEVYRLNLEQGRFLNPFETDSG-ELNVVSINEEHGLLACGTEDG 197 (703)
T ss_pred cCeeeeeec-CcCCccccccCCCccEEEeec----CcceEEEEccccccccccccccc-cceeeeecCccceEEecccCc
Confidence 111111111 112345555543333444433 45689999999999998887665 799999999988999999999
Q ss_pred cEEEEECCCCeeeEeeccCC---------CCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccC
Q 001319 608 QIKFWDMDNVNILTSTDAEG---------GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRT 678 (1101)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~---------~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 678 (1101)
.|.+||.+....+..+.... ....|+++.|+.+|-.+++|+.+|.+.|||+.+....+..-
T Consensus 198 ~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kd---------- 267 (703)
T KOG2321|consen 198 VVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKD---------- 267 (703)
T ss_pred eEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecc----------
Confidence 99999999877766654332 23458999999999999999999999999997662211100
Q ss_pred cceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecC
Q 001319 679 PIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN 758 (1101)
Q Consensus 679 ~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d 758 (1101)
|
T Consensus 268 ---------------------------------------------------------h---------------------- 268 (703)
T KOG2321|consen 268 ---------------------------------------------------------H---------------------- 268 (703)
T ss_pred ---------------------------------------------------------c----------------------
Confidence 0
Q ss_pred CeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC--CCeEEEEcCCeEEEEECCCce
Q 001319 759 GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYVMSATGGKISLFNMMTFK 836 (1101)
Q Consensus 759 g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~la~~~dg~i~vwd~~~~~ 836 (1101)
+..-+|..+.|.+. +..+++.....++|||-.+|+
T Consensus 269 -------------------------------------------~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk 305 (703)
T KOG2321|consen 269 -------------------------------------------GYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGK 305 (703)
T ss_pred -------------------------------------------CCccceeeecccccCCCceEEecchHHhhhcccccCC
Confidence 12334445555443 445666666789999999999
Q ss_pred EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 837 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 837 ~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
....+.. ...+..+|+-| ++-+++++.+++.+..|-+..
T Consensus 306 ~~asiEp-t~~lND~C~~p-~sGm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 306 PMASIEP-TSDLNDFCFVP-GSGMFFTANESSKMHTYYIPS 344 (703)
T ss_pred ceeeccc-cCCcCceeeec-CCceEEEecCCCcceeEEccc
Confidence 9888775 44599999999 888888999998888776654
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.1e-09 Score=116.24 Aligned_cols=203 Identities=14% Similarity=0.175 Sum_probs=132.0
Q ss_pred eEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-ceEE--
Q 001319 808 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVK-- 881 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~-~~~~-- 881 (1101)
..++++|||+++.+.. ++.|.+.|+.+++.+.++.... +..-...+. +. .+ +-+.||......+.+ |+..
T Consensus 108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~-~~~vy~t~e-~~-~~-~~~~Dg~~~~v~~d~~g~~~~~ 183 (352)
T TIGR02658 108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD-CYHIFPTAN-DT-FF-MHCRDGSLAKVGYGTKGNPKIK 183 (352)
T ss_pred ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC-CcEEEEecC-Cc-cE-EEeecCceEEEEecCCCceEEe
Confidence 3578889999888764 5789999999999988887532 222222222 22 22 223445444433322 1111
Q ss_pred --EeeccCCCCe-eEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceEEeec------CCCCCCCcceEEEcCCCCEE
Q 001319 882 --SKLKGHQKRI-TGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 882 --~~~~~h~~~V-~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l 951 (1101)
..+.+-..++ ..-.|++ ||+++..... |+|.+-|+...+.......... .+-.+....-++++++++.+
T Consensus 184 ~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~l 262 (352)
T TIGR02658 184 PTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRI 262 (352)
T ss_pred eeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEE
Confidence 1111100111 0014455 8887776666 9999999766543333322221 12233555569999999998
Q ss_pred EEEe-----------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCceeEee
Q 001319 952 LVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 952 ~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 1018 (1101)
.+.. .+.|.++|..+++.+..+.. ...+..++|||||+ +|++.. .++.|.|.|..+++.+..+
T Consensus 263 yV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v----G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 263 YLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL----GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEEecCCccccccCCCCEEEEEECCCCeEEEEEeC----CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 8832 25899999999999999887 56899999999999 887666 6788999999999999988
Q ss_pred C
Q 001319 1019 A 1019 (1101)
Q Consensus 1019 ~ 1019 (1101)
.
T Consensus 339 ~ 339 (352)
T TIGR02658 339 N 339 (352)
T ss_pred c
Confidence 4
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-11 Score=122.39 Aligned_cols=342 Identities=13% Similarity=0.232 Sum_probs=215.9
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
..+.++|+.+ .++....-|..+-+++.++|.++++|--. .++.-..+.. ....++.++.+.++.+.|++|-.+|++.
T Consensus 16 ll~~~eG~~d-~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~-~mP~~~~~~~y~~e~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 16 LLSKIEGSQD-DVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYH-YMPSPCSAMEYVSESRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhcCchh-hhhhheeccCCCCeEEccccceeeeEEeccccccCchhhh-hCCCCceEeeeeccceEEEEEEecceEE
Confidence 4456677766 56666666777889999999999999544 4444333332 2234788999999999999999999988
Q ss_pred EEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCC
Q 001319 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPEST 734 (1101)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 734 (1101)
-+.+..........+ ...
T Consensus 94 efs~sedfnkm~~~r--------------------------------------------------------------~~~ 111 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLK--------------------------------------------------------------DYL 111 (404)
T ss_pred EEEhhhhhhhcchhh--------------------------------------------------------------hhh
Confidence 776653311111110 013
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 814 (1101)
.|...+..+.|+-....+++.+.|..+. |-......... +..+. ...+++.+
T Consensus 112 ~h~~~v~~~if~~~~e~V~s~~~dk~~~-~hc~e~~~~lg----------------~Y~~~---------~~~t~~~~-- 163 (404)
T KOG1409|consen 112 AHQARVSAIVFSLTHEWVLSTGKDKQFA-WHCTESGNRLG----------------GYNFE---------TPASALQF-- 163 (404)
T ss_pred hhhcceeeEEecCCceeEEEeccccceE-EEeeccCCccc----------------ceEee---------ccCCCCce--
Confidence 4788888999998888899998886654 32211100000 00000 00001111
Q ss_pred CCCeEEEEc-CCeEEEEE--CCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCCCC
Q 001319 815 NDSYVMSAT-GGKISLFN--MMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKR 890 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd--~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~ 890 (1101)
|-.+...|. .|.|.+.. .....++.++.+|.+++++++|.+ ...+|.+|..|..|.+||+.-++- ..++.+|.+.
T Consensus 164 d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~-~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~k 242 (404)
T KOG1409|consen 164 DALYAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDP-GQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDK 242 (404)
T ss_pred eeEEEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcC-CCcEEEeccccCceEEEeccCCcceeeeeccchhh
Confidence 111333444 45555443 345677889999999999999999 889999999999999999986543 4577899999
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE-------------------------EeecCCCCC---CCcceE
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT-------------------------IHIPAGKTP---TGDTRV 942 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~-------------------------~~~~~~~~~---~~v~~~ 942 (1101)
|..+...+--+.|++++.||.|.+|+.+........- +.....+.. ..+...
T Consensus 243 V~~l~~~~~t~~l~S~~edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crkcg~avc~~ 322 (404)
T KOG1409|consen 243 VQALSYAQHTRQLISCGEDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRKCGKAVCGK 322 (404)
T ss_pred hhhhhhhhhheeeeeccCCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhhhhhhcCcc
Confidence 9999999888999999999999999987543221110 000000000 112222
Q ss_pred EEcCCCCEEEEEeCCeEEEEEcCCc-----eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 943 QFNADQVRMLVVHETQLAIYDASKM-----ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 943 ~~s~d~~~l~~~~d~~i~v~d~~~~-----~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
+-+....+...+..-.+++.|.-.. .....-.+|.. ...|+.+.+-.+-.+|+|++.|..|+|||+..
T Consensus 323 c~s~~~~~p~mg~e~~vR~~~~c~~~i~~~~~t~LA~phei-~tgItamhlqetlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 323 CSSNRSSYPTMGFEFSVRVCDSCYPTIKDEERTPLAIPHEI-KTGITAMHLQETLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred cccCccccccccceeEEEEecccchhhhcCCCCcccccccc-ccceeEEEhhhhccceeecCCceEEEEEechh
Confidence 2222222223344444555543211 11001111222 56799999988888999999999999999875
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=6.2e-11 Score=117.15 Aligned_cols=357 Identities=15% Similarity=0.232 Sum_probs=214.5
Q ss_pred ccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCc----eeEEeecCC------------cCeEEEecccCCCccEE
Q 001319 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR----KLFNFEGHE------------APVYSICPHHKENIQFI 511 (1101)
Q Consensus 450 h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~----~~~~~~~h~------------~~v~~v~~~~~~~~~~l 511 (1101)
..+-|.++.|..+|. +|++|..+|.|.++. ...+ ....+..|. ..|..+.|....+...+
T Consensus 24 eadiis~vef~~~Ge--~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~F 101 (433)
T KOG1354|consen 24 EADIISAVEFDHYGE--RLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEF 101 (433)
T ss_pred hhcceeeEEeecccc--eEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEE
Confidence 345689999999999 899999999999998 2222 223344443 35788889888888888
Q ss_pred EEeccCCeEEEEecCCCCeeee-----ccCCCCceEEEEE---ccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc
Q 001319 512 FSTAIDGKIKAWLYDTMGSRVD-----YDAPGHWCTTMLY---SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1101)
Q Consensus 512 ~s~~~d~~i~~wd~~~~~~~~~-----~~~~~~~v~~~~~---s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1101)
+..+.|++|++|.+........ .......++++.. .+....+ ...+.+.+...
T Consensus 102 LlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~v-------------------ea~prRv~aNa 162 (433)
T KOG1354|consen 102 LLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEV-------------------EASPRRVYANA 162 (433)
T ss_pred EEecCCcceeeeeeeccccccccccccccCCCCccceeeceeecccccee-------------------eeeeeeecccc
Confidence 8899999999998866544331 1111112222221 1111111 11233445444
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC-eeeEeeccCCC-----CCCCCeeEEecC-CCEEEEEEcCCcEEEE
Q 001319 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV-NILTSTDAEGG-----LPNLPRLRFSKE-GNLLAVTTADNGFKIL 656 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~-~~~~~~~~~~~-----~~~v~~v~~s~~-g~~l~~~~~d~~i~iw 656 (1101)
+..-+++++++.|+..++++ .|=.|.+|+++-- +.......... ..-|++..|+|. -+.++..+..|+|++-
T Consensus 163 HtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 163 HTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred ceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 44578899999998887776 5678999998642 22222221111 124678889995 4567777788999999
Q ss_pred EccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCC
Q 001319 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDT 736 (1101)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (1101)
|++....+...-. .+ ..|.
T Consensus 242 DmR~~aLCd~hsK--lf-------------------------------------------------------Eepe---- 260 (433)
T KOG1354|consen 242 DMRQSALCDAHSK--LF-------------------------------------------------------EEPE---- 260 (433)
T ss_pred echhhhhhcchhh--hh-------------------------------------------------------cccc----
Confidence 9874411110000 00 0000
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
++.+..... +--..|..+.|+++|
T Consensus 261 --------------------------------------------------dp~~rsffs------eiIsSISDvKFs~sG 284 (433)
T KOG1354|consen 261 --------------------------------------------------DPSSRSFFS------EIISSISDVKFSHSG 284 (433)
T ss_pred --------------------------------------------------CCcchhhHH------HHhhhhhceEEccCC
Confidence 000000000 023447788999999
Q ss_pred CeEEEEcCCeEEEEEC-CCceEEEEeeCCC------------CCe---eEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 817 SYVMSATGGKISLFNM-MTFKVMTTFMSPP------------PAS---TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 817 ~~la~~~dg~i~vwd~-~~~~~~~~~~~~~------------~~i---~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
+++++-+--+|++||+ ...+++.+++.|. ..| ..++|+. ++.++++|+..+.+++|++..|..
T Consensus 285 ryilsRDyltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg-~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 285 RYILSRDYLTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWSG-NDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred cEEEEeccceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEcC-CcceEecccccceEEEecCCCCcc
Confidence 9999988889999998 4566666666554 222 3578888 788999999999999999776643
Q ss_pred E-EeeccCCCC--eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCC
Q 001319 881 K-SKLKGHQKR--ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET 957 (1101)
Q Consensus 881 ~-~~~~~h~~~--V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~ 957 (1101)
. .++...... +..+ ..-+.+.+++......+|-.. -.....+...+|+|....+|++..+
T Consensus 364 ~d~tl~asr~~~~~~~~---~k~~~V~~~g~r~~~~~~vd~--------------ldf~kkilh~aWhp~en~ia~aatn 426 (433)
T KOG1354|consen 364 EDFTLEASRKNMKPRKV---LKLRLVSSSGKRKRDEISVDA--------------LDFRKKILHTAWHPKENSIAVAATN 426 (433)
T ss_pred eeecccccccCCccccc---ccceeeecCCCccccccccch--------------hhhhhHHHhhccCCccceeeeeecC
Confidence 2 222222111 1111 112344444444332222110 0011456778999999999998777
Q ss_pred eEEEEE
Q 001319 958 QLAIYD 963 (1101)
Q Consensus 958 ~i~v~d 963 (1101)
.+.+|.
T Consensus 427 nlyif~ 432 (433)
T KOG1354|consen 427 NLYIFQ 432 (433)
T ss_pred ceEEec
Confidence 777763
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=2e-09 Score=108.80 Aligned_cols=258 Identities=12% Similarity=0.123 Sum_probs=167.9
Q ss_pred CcccEEEEEeecCcccEEEeecC---CeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEe
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSN---GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 812 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~d---g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 812 (1101)
.....+-++++++++.|.++..+ |.+.-|.++ ..+|.+....... ....+-+.+++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD--------------------~~~G~Lt~ln~~~-~~g~~p~yvsv 96 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRID--------------------PDDGRLTFLNRQT-LPGSPPCYVSV 96 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEc--------------------CCCCeEEEeeccc-cCCCCCeEEEE
Confidence 44455667777777777776554 555555543 2223321111100 12333388999
Q ss_pred cCCCCeEEEEc--CCeEEEEECCC-ceEEEE--eeCCCCC----------eeEEEEecCCCCEEEEEeC-CCcEEEEEee
Q 001319 813 SKNDSYVMSAT--GGKISLFNMMT-FKVMTT--FMSPPPA----------STFLAFHPQDNNIIAIGTE-DSTIHIYNVR 876 (1101)
Q Consensus 813 s~dg~~la~~~--dg~i~vwd~~~-~~~~~~--~~~~~~~----------i~~l~~s~~~~~~la~g~~-dg~v~iwd~~ 876 (1101)
+++|++|+++. .|.|.++-+.. |.+... +..|.+. +.+..+.| ++++|++.+- --.|.+|++.
T Consensus 97 d~~g~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP-~~~~l~v~DLG~Dri~~y~~~ 175 (346)
T COG2706 97 DEDGRFVFVANYHSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTP-DGRYLVVPDLGTDRIFLYDLD 175 (346)
T ss_pred CCCCCEEEEEEccCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCC-CCCEEEEeecCCceEEEEEcc
Confidence 99999999997 68999999864 443222 2224443 88999999 8988887763 3479999999
Q ss_pred cceEEEeec---cCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCC--ccccceEEeecCCCC--CCCcceEEEcCCC
Q 001319 877 VDEVKSKLK---GHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTW--EKRKSVTIHIPAGKT--PTGDTRVQFNADQ 948 (1101)
Q Consensus 877 ~~~~~~~~~---~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~--~~~~~~~~~~~~~~~--~~~v~~~~~s~d~ 948 (1101)
.|++...-. ........|.|+|++++..... -+++|-+|..+.. +......+....... ......+.+++||
T Consensus 176 dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dG 255 (346)
T COG2706 176 DGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDG 255 (346)
T ss_pred cCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCC
Confidence 886543211 2345578999999999876655 5889999999873 332222222222221 2567789999999
Q ss_pred CEEEEEe--CCeEEEEEcCCc-eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCC--CCcee
Q 001319 949 VRMLVVH--ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDAD--TLRLR 1015 (1101)
Q Consensus 949 ~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-~i~vwd~~--~~~~~ 1015 (1101)
++|.++. ...|.+|.++.. ..+........+....+...|+++|++|+++.+++ .|.||.++ +|++-
T Consensus 256 rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~~TG~L~ 328 (346)
T COG2706 256 RFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDKETGRLT 328 (346)
T ss_pred CEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcCCCceEE
Confidence 9999975 457888887643 22333332233355688999999999999888654 58888665 45543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.1e-10 Score=121.56 Aligned_cols=251 Identities=15% Similarity=0.243 Sum_probs=164.0
Q ss_pred CCCEeEEEecCCCCeEEEEc-----CCeEEEEECCC--ceE--EEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEE
Q 001319 804 EEAVPCIALSKNDSYVMSAT-----GGKISLFNMMT--FKV--MTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIY 873 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-----dg~i~vwd~~~--~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iw 873 (1101)
......++++|++++|.+.. .|.|..|++.. +++ +............++++| ++++|+++. .+|.|.++
T Consensus 36 ~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~-~g~~l~vany~~g~v~v~ 114 (345)
T PF10282_consen 36 GENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDP-DGRFLYVANYGGGSVSVF 114 (345)
T ss_dssp SSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECT-TSSEEEEEETTTTEEEEE
T ss_pred CCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEec-CCCEEEEEEccCCeEEEE
Confidence 44556789999999998875 25788888765 333 344443455667899999 888887776 58999999
Q ss_pred Eeec-ceEEEe---ec----------cCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCc--cccceEEeecCCCCC
Q 001319 874 NVRV-DEVKSK---LK----------GHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWE--KRKSVTIHIPAGKTP 936 (1101)
Q Consensus 874 d~~~-~~~~~~---~~----------~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~--~~~~~~~~~~~~~~~ 936 (1101)
++.. +.+... +. .-.....++.|+||++++++... ...|.+|+++... ......+....+
T Consensus 115 ~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G--- 191 (345)
T PF10282_consen 115 PLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPG--- 191 (345)
T ss_dssp EECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTT---
T ss_pred EccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccC---
Confidence 9986 443322 11 11244778999999998887642 3469999998765 322223333333
Q ss_pred CCcceEEEcCCCCEEEEEe--CCeEEEEEcC--Cce--eeeEeccC---CCCCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 001319 937 TGDTRVQFNADQVRMLVVH--ETQLAIYDAS--KME--RIRQWTPQ---DALSAPISCAVYSCNSQLVFATF-CDGNIGV 1006 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~--~~~--~~~~~~~~---~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~v 1006 (1101)
...++++|+|+++++.+.. ++.|.+|++. ++. .+..+... .........++++|||++|+++. .+++|.+
T Consensus 192 ~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~v 271 (345)
T PF10282_consen 192 SGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISV 271 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEE
T ss_pred CCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEE
Confidence 6789999999999998865 7899999988 443 22222221 11123688999999999988765 5678999
Q ss_pred EeCC--CCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCeEEEEeCCCCCC
Q 001319 1007 FDAD--TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSESEG 1069 (1101)
Q Consensus 1007 wd~~--~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~-~Dg~v~iWd~~~~~~ 1069 (1101)
|+++ ++.+...-.. ......+..++++| ++++|+++. .++.|.+|++....+
T Consensus 272 f~~d~~~g~l~~~~~~----------~~~G~~Pr~~~~s~-~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 272 FDLDPATGTLTLVQTV----------PTGGKFPRHFAFSP-DGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEECTTTTTEEEEEEE----------EESSSSEEEEEE-T-TSSEEEEEETTTTEEEEEEEETTTT
T ss_pred EEEecCCCceEEEEEE----------eCCCCCccEEEEeC-CCCEEEEEecCCCeEEEEEEeCCCC
Confidence 9993 3443221110 12233577899999 577666655 778999998754433
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.3e-11 Score=120.72 Aligned_cols=179 Identities=17% Similarity=0.226 Sum_probs=132.5
Q ss_pred eecCcccEEE-eecC--CeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC--CCeE
Q 001319 745 YTNSAVGLLA-LGSN--GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN--DSYV 819 (1101)
Q Consensus 745 ~s~~~~~l~~-~~~d--g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--g~~l 819 (1101)
-++....|++ |+.. ..+++||+....+ +|....-..- .-+..-.-.++.+.|-+. ...+
T Consensus 156 ~~~~~p~Iva~GGke~~n~lkiwdle~~~q-------------iw~aKNvpnD---~L~LrVPvW~tdi~Fl~g~~~~~f 219 (412)
T KOG3881|consen 156 QTDTDPYIVATGGKENINELKIWDLEQSKQ-------------IWSAKNVPND---RLGLRVPVWITDIRFLEGSPNYKF 219 (412)
T ss_pred cCCCCCceEecCchhcccceeeeeccccee-------------eeeccCCCCc---cccceeeeeeccceecCCCCCceE
Confidence 3344444555 6666 7899999875432 3332221100 000012334567888776 7788
Q ss_pred EEEc-CCeEEEEECCCce-EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe-eccCCCCeeEEEE
Q 001319 820 MSAT-GGKISLFNMMTFK-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRITGLAF 896 (1101)
Q Consensus 820 a~~~-dg~i~vwd~~~~~-~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~V~~l~~ 896 (1101)
|++. -+.+++||...++ ++..+.--..+++++...| +++++.+|..-|.+..||+..++.+.. +.+-.+.|+++..
T Consensus 220 at~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p-~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~ 298 (412)
T KOG3881|consen 220 ATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTP-SGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC 298 (412)
T ss_pred EEEecceeEEEecCcccCcceeEeccccCcceeeeecC-CCcEEEEecccchhheecccCceeeccccCCccCCcceEEE
Confidence 8888 7999999998664 5777777788999999999 999999999999999999999998877 8999999999999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC
Q 001319 897 STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 897 s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
+|.+++|+++|-|..|||+|+++.+.+....+. ...+.+.+.++
T Consensus 299 hp~~~~las~GLDRyvRIhD~ktrkll~kvYvK-------s~lt~il~~~~ 342 (412)
T KOG3881|consen 299 HPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVK-------SRLTFILLRDD 342 (412)
T ss_pred cCCCceEEeeccceeEEEeecccchhhhhhhhh-------ccccEEEecCC
Confidence 999999999999999999999996655443332 44555555443
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.1e-10 Score=131.25 Aligned_cols=241 Identities=12% Similarity=0.055 Sum_probs=148.5
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceE--EEEEeccC--cEEEEecCCCceeccccceeecccccCcccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTL--LLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~l--lasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 402 (1101)
+|.++.--............+..-+|||||+.+ +.+...+| .|.+.++.+++... +
T Consensus 167 l~~~d~dG~~~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~--------------------l 226 (428)
T PRK01029 167 LWSVDYDGQNLRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK--------------------I 226 (428)
T ss_pred EEEEcCCCCCceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE--------------------e
Confidence 555543333333333455667788999999763 23444443 57777887775432 2
Q ss_pred ccCCccEEEEEEccCCCEEEEEEC-----CCeEEEEeecCCc--ccccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~~-----d~~i~vwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
....+.....+|||||+.||..+. +..+.+|++.++. ..+. ...++.+.....+|+|||+. ++++...++
T Consensus 227 t~~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~--lt~~~~~~~~~p~wSPDG~~-Laf~s~~~g 303 (428)
T PRK01029 227 LALQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRR--LLNEAFGTQGNPSFSPDGTR-LVFVSNKDG 303 (428)
T ss_pred ecCCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceE--eecCCCCCcCCeEECCCCCE-EEEEECCCC
Confidence 223445567899999999997653 2234557776532 1221 12233344567899999995 333444566
Q ss_pred eEEEEE--c--CCceeEEeecCCcCeEEEecccCCCccEEEEeccC---CeEEEEecCCCCeeeeccCCCCceEEEEEcc
Q 001319 476 LIKVWE--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA 548 (1101)
Q Consensus 476 ~v~iwd--~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~ 548 (1101)
...+|. . .+.....+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++...... ....+....|+|
T Consensus 304 ~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSP--DG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~-~~~~~~~p~wSp 380 (428)
T PRK01029 304 RPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSP--DGKKIAFCSVIKGVRQICVYDLATGRDYQLTT-SPENKESPSWAI 380 (428)
T ss_pred CceEEEEECcccccceEEeccCCCCccceeECC--CCCEEEEEEcCCCCcEEEEEECCCCCeEEccC-CCCCccceEECC
Confidence 555664 3 2344555555556677788877 56777665443 468999998876654332 234567899999
Q ss_pred CCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC
Q 001319 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1101)
||+.|+.... ..+...|+++|+.+++......+. + .+...+|+|-
T Consensus 381 DG~~L~f~~~-~~g~~~L~~vdl~~g~~~~Lt~~~-g-~~~~p~Ws~~ 425 (428)
T PRK01029 381 DSLHLVYSAG-NSNESELYLISLITKKTRKIVIGS-G-EKRFPSWGAF 425 (428)
T ss_pred CCCEEEEEEC-CCCCceEEEEECCCCCEEEeecCC-C-cccCceecCC
Confidence 9999886653 234678999999888765554432 1 3445677764
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-10 Score=131.32 Aligned_cols=223 Identities=13% Similarity=0.114 Sum_probs=143.2
Q ss_pred cccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--e
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~ 476 (1101)
+..+...+.+.+|||||++||..+.+ ..|.+||+.+++... +....+.+...+|+|||+. ++++.+.++ .
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~----l~~~~g~~~~~~~SpDG~~-la~~~~~~g~~~ 268 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ----ITNFEGLNGAPAWSPDGSK-LAFVLSKDGNPE 268 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE----ccCCCCCcCCeEECCCCCE-EEEEEccCCCce
Confidence 44567789999999999999887643 369999999886432 3333445667899999995 334555555 6
Q ss_pred EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 477 v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
|.+||..+.....+..+........|++ ||+.|+..+ .++ .|.++++.+++.... ...........|+|||+++
T Consensus 269 Iy~~d~~~~~~~~lt~~~~~~~~~~~sp--Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~~~~~~~~~Spdg~~i 345 (430)
T PRK00178 269 IYVMDLASRQLSRVTNHPAIDTEPFWGK--DGRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVGNYNARPRLSADGKTL 345 (430)
T ss_pred EEEEECCCCCeEEcccCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECCCCCEEEe-ecCCCCccceEECCCCCEE
Confidence 8888954445556666666666677876 556665544 333 566677766654322 2223334567899999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC---CcEEEEECCCCeeeEeeccCCCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+..... ++...|.+||+.+++........ ......|+|+|+.++..+.+ ..+++++...+ ....+.... .
T Consensus 346 ~~~~~~-~~~~~l~~~dl~tg~~~~lt~~~---~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~-~~~~l~~~~--g 418 (430)
T PRK00178 346 VMVHRQ-DGNFHVAAQDLQRGSVRILTDTS---LDESPSVAPNGTMLIYATRQQGRGVLMLVSINGR-VRLPLPTAQ--G 418 (430)
T ss_pred EEEEcc-CCceEEEEEECCCCCEEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCC-ceEECcCCC--C
Confidence 887642 23446899999888654333221 12235899999999886643 35777777543 333343322 2
Q ss_pred CCCeeEEec
Q 001319 631 NLPRLRFSK 639 (1101)
Q Consensus 631 ~v~~v~~s~ 639 (1101)
.+...+|+|
T Consensus 419 ~~~~p~ws~ 427 (430)
T PRK00178 419 EVREPSWSP 427 (430)
T ss_pred CcCCCccCC
Confidence 456677776
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.4e-10 Score=131.85 Aligned_cols=223 Identities=13% Similarity=0.095 Sum_probs=142.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce--
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL-- 476 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~-- 476 (1101)
+..+...+.+.+|||||++|+..+.+ ..|.+||+.+++... +....+.....+|+|||+. ++++.+.++.
T Consensus 213 l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~----lt~~~g~~~~~~wSPDG~~-La~~~~~~g~~~ 287 (448)
T PRK04792 213 LLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK----VTSFPGINGAPRFSPDGKK-LALVLSKDGQPE 287 (448)
T ss_pred eecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE----ecCCCCCcCCeeECCCCCE-EEEEEeCCCCeE
Confidence 44466789999999999999987543 258899998876432 2222334457899999996 3445566664
Q ss_pred EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 477 v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
|.+||..+..+..+..+.......+|++ ||+.|+..+ .++ .|.++|+.+++... +..........+|+|||+++
T Consensus 288 Iy~~dl~tg~~~~lt~~~~~~~~p~wSp--DG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-Lt~~g~~~~~~~~SpDG~~l 364 (448)
T PRK04792 288 IYVVDIATKALTRITRHRAIDTEPSWHP--DGKSLIFTSERGGKPQIYRVNLASGKVSR-LTFEGEQNLGGSITPDGRSM 364 (448)
T ss_pred EEEEECCCCCeEECccCCCCccceEECC--CCCEEEEEECCCCCceEEEEECCCCCEEE-EecCCCCCcCeeECCCCCEE
Confidence 7777855555566666666667788877 556665544 344 45556666555432 22233334567899999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC-CC--cEEEEECCCCeeeEeeccCCCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--QIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+..+.. ++...|.++|+.+++........ ......|+|+|+.++..+. ++ .+++++. ++.....+....+
T Consensus 365 ~~~~~~-~g~~~I~~~dl~~g~~~~lt~~~---~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~~~~g-- 437 (448)
T PRK04792 365 IMVNRT-NGKFNIARQDLETGAMQVLTSTR---LDESPSVAPNGTMVIYSTTYQGKQVLAAVSI-DGRFKARLPAGQG-- 437 (448)
T ss_pred EEEEec-CCceEEEEEECCCCCeEEccCCC---CCCCceECCCCCEEEEEEecCCceEEEEEEC-CCCceEECcCCCC--
Confidence 887642 23446777898888754332221 1223479999999887653 33 3777787 4555555544322
Q ss_pred CCCeeEEec
Q 001319 631 NLPRLRFSK 639 (1101)
Q Consensus 631 ~v~~v~~s~ 639 (1101)
.+...+|+|
T Consensus 438 ~~~~p~Wsp 446 (448)
T PRK04792 438 EVKSPAWSP 446 (448)
T ss_pred CcCCCccCC
Confidence 466778876
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.1e-11 Score=120.61 Aligned_cols=350 Identities=15% Similarity=0.187 Sum_probs=213.1
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCceeEEee-cCCcCeEEEecccCCCccEEEEeccCCeEEE
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKA 522 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~ 522 (1101)
.++||.+.|++...-|-.. -+++.+.|.+++||- . .|+--..+. ....+++++.+.. +...|+.|-..|++.-
T Consensus 19 ~~eG~~d~vn~~~l~~~e~--gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~--e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 19 KIEGSQDDVNAAILIPKEE--GVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVS--ESRRLYVGQDNGTVTE 94 (404)
T ss_pred hhcCchhhhhhheeccCCC--CeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeec--cceEEEEEEecceEEE
Confidence 5789999999998888777 599999999999998 3 343322222 2334567777655 5578888888999988
Q ss_pred Eec----CCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC
Q 001319 523 WLY----DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN 598 (1101)
Q Consensus 523 wd~----~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 598 (1101)
+.+ +..........|...+..+.|+....++++++. |..+.---.+.+..+..+.-.. ....+.+.-.
T Consensus 95 fs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~----dk~~~~hc~e~~~~lg~Y~~~~--~~t~~~~d~~-- 166 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGK----DKQFAWHCTESGNRLGGYNFET--PASALQFDAL-- 166 (404)
T ss_pred EEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEecc----ccceEEEeeccCCcccceEeec--cCCCCceeeE--
Confidence 754 334444556677888999999999999999875 4334322233333222211100 0011111111
Q ss_pred EEEEEeCCCcEEEEECCC--CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccc
Q 001319 599 HFLAVGEDSQIKFWDMDN--VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 599 ~l~~~~~dg~i~iwd~~~--~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+.+.|...|.|..-.+.. -.++.++.+ +...+.+++|.+..+.|.+|..|..+.+||+.........+
T Consensus 167 ~~fvGd~~gqvt~lr~~~~~~~~i~~~~~--h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el-------- 236 (404)
T KOG1409|consen 167 YAFVGDHSGQITMLKLEQNGCQLITTFNG--HTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYEL-------- 236 (404)
T ss_pred EEEecccccceEEEEEeecCCceEEEEcC--cccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeee--------
Confidence 455566667766665543 344555544 45689999999999999999999999999986542221111
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
.+|...|..+.+.+-.+.+++++
T Consensus 237 ---------------------------------------------------------~gh~~kV~~l~~~~~t~~l~S~~ 259 (404)
T KOG1409|consen 237 ---------------------------------------------------------QGHNDKVQALSYAQHTRQLISCG 259 (404)
T ss_pred ---------------------------------------------------------ccchhhhhhhhhhhhheeeeecc
Confidence 33667777777778888899999
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeec-----ccccccc------CCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCC
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASA-----VPQHWLP------SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGG 825 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~-----~~~~~~~------~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg 825 (1101)
.||.|.+|+++.......+...... ....|+. ..--+.....+. -...+...+-+....+...|..=
T Consensus 260 edg~i~~w~mn~~r~etpewl~s~~cQ~c~qpffwn~~~m~~~k~~glr~h~crk--cg~avc~~c~s~~~~~p~mg~e~ 337 (404)
T KOG1409|consen 260 EDGGIVVWNMNVKRVETPEWLDSDSCQKCNQPFFWNFRQMWDRKQLGLRQHHCRK--CGKAVCGKCSSNRSSYPTMGFEF 337 (404)
T ss_pred CCCeEEEEeccceeecCccccccchhhhhCchHHHHHHHHHhhhhhhhhhhhhhh--hhhhcCcccccCcccccccccee
Confidence 9999999998765443333222211 1222222 111111111110 11222222222222233333333
Q ss_pred eEEEEECC-------CceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 826 KISLFNMM-------TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 826 ~i~vwd~~-------~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
.+++-|.- +...+..+..-...|+.+.+.. .-.+|++++.|..|+|||+..
T Consensus 338 ~vR~~~~c~~~i~~~~~t~LA~phei~tgItamhlqe-tlglLvTsG~~Rvi~iwd~~~ 395 (404)
T KOG1409|consen 338 SVRVCDSCYPTIKDEERTPLAIPHEIKTGITAMHLQE-TLGLLVTSGTDRVIKIWDVRS 395 (404)
T ss_pred EEEEecccchhhhcCCCCccccccccccceeEEEhhh-hccceeecCCceEEEEEechh
Confidence 45554431 1122333333345689998887 677899999999999999863
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.37 E-value=6e-11 Score=117.32 Aligned_cols=163 Identities=18% Similarity=0.340 Sum_probs=116.2
Q ss_pred EEEEEEccCCCEEEEEEC----------CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 409 VSRVAWSPDGNYVGVAFT----------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 409 v~~~~~spdg~~las~~~----------d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
=..+.|+|+|++|++-.. -+...+|-++..........+ ...++|.+++|+|+|+.+.++.|..++.|.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l-~~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIEL-KKEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeec-cCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 346889999999886433 234666666433222111122 234579999999999975566677788999
Q ss_pred EEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc---CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+||.+++.+..+. ...++.+.|+| +|++|+.++. .|.|.+||.++.+.+.... ...++.++|+|||+++++
T Consensus 87 lyd~~~~~i~~~~--~~~~n~i~wsP--~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~t 160 (194)
T PF08662_consen 87 LYDVKGKKIFSFG--TQPRNTISWSP--DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLAT 160 (194)
T ss_pred EEcCcccEeEeec--CCCceEEEECC--CCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEE
Confidence 9997788887774 56788999987 6689988864 4679999999766665543 334789999999999999
Q ss_pred eecC--CCCCceEEEEeCCCCeeEEE
Q 001319 556 CGTS--KDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 556 ~~~~--~~~~~~i~iwd~~~~~~~~~ 579 (1101)
+... ...++.++||+.. |+.+..
T Consensus 161 a~t~~r~~~dng~~Iw~~~-G~~l~~ 185 (194)
T PF08662_consen 161 ATTSPRLRVDNGFKIWSFQ-GRLLYK 185 (194)
T ss_pred EEeccceeccccEEEEEec-CeEeEe
Confidence 8752 2346778899874 554444
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.7e-09 Score=107.88 Aligned_cols=255 Identities=11% Similarity=0.236 Sum_probs=175.6
Q ss_pred CCCCEeEEEecCCCCeEEEEc----CCeEEEEECCC--ceEE--EEeeCCCCCeeEEEEecCCCCEEEEEeC-CCcEEEE
Q 001319 803 LEEAVPCIALSKNDSYVMSAT----GGKISLFNMMT--FKVM--TTFMSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIY 873 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~----dg~i~vwd~~~--~~~~--~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg~v~iw 873 (1101)
.....+-++++|+++.|.++. +|.|..|.++. |++. ........+-+.+++++ ++++|+++.. -|.|.++
T Consensus 38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~-~g~~vf~AnY~~g~v~v~ 116 (346)
T COG2706 38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDE-DGRFVFVANYHSGSVSVY 116 (346)
T ss_pred ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECC-CCCEEEEEEccCceEEEE
Confidence 566778899999998887763 36677777653 5543 22222334458899999 8988888874 5799999
Q ss_pred Eeec-ceEEE--eeccCCCC----------eeEEEEcCCCCEEEEEe--CCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 874 NVRV-DEVKS--KLKGHQKR----------ITGLAFSTSLNILVSSG--ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 874 d~~~-~~~~~--~~~~h~~~----------V~~l~~s~d~~~l~s~s--~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
-+.+ |.+.. ....|.+. +-...+.|++++|++.. .| .|.+|++..|............+ ..
T Consensus 117 p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~D-ri~~y~~~dg~L~~~~~~~v~~G---~G 192 (346)
T COG2706 117 PLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTD-RIFLYDLDDGKLTPADPAEVKPG---AG 192 (346)
T ss_pred EcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCc-eEEEEEcccCccccccccccCCC---CC
Confidence 9965 43321 22235554 88899999999999875 44 49999999888776666555444 77
Q ss_pred cceEEEcCCCCEEEEEe--CCeEEEEEcCCc-eeeeEeccCC------CCCCCEEEEEEccCCCEEEEEe-CCCcEEEEe
Q 001319 939 DTRVQFNADQVRMLVVH--ETQLAIYDASKM-ERIRQWTPQD------ALSAPISCAVYSCNSQLVFATF-CDGNIGVFD 1008 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~-~~~~~~~~~~------~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd 1008 (1101)
.+.+.|+|++++..+.. +++|.+|..+.. ..+..+.... .......+|.+++||++|.++. ....|.+|.
T Consensus 193 PRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~ 272 (346)
T COG2706 193 PRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFS 272 (346)
T ss_pred cceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEE
Confidence 89999999999988854 899999998863 2222222211 1256788999999999999876 244788887
Q ss_pred CCC--CceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEEC-CCeEEEEeCCCCCCcccc
Q 001319 1009 ADT--LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT-DGSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1009 ~~~--~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~-Dg~v~iWd~~~~~~~~~~ 1073 (1101)
+.. +++...... ..+...+-...++| ++++|+.++. +.+|.+|..+...+.+..
T Consensus 273 V~~~~g~L~~~~~~----------~teg~~PR~F~i~~-~g~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 273 VDPDGGKLELVGIT----------PTEGQFPRDFNINP-SGRFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred EcCCCCEEEEEEEe----------ccCCcCCccceeCC-CCCEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 764 332221111 23334566788999 5666666654 567999988766554443
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.5e-10 Score=118.97 Aligned_cols=238 Identities=13% Similarity=0.165 Sum_probs=160.5
Q ss_pred EEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC-----CcEEEEEeecceEEEe
Q 001319 809 CIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDEVKSK 883 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~v~iwd~~~~~~~~~ 883 (1101)
-+.||.|++++|--..+.|.||+..+..++..-......|....|+| .+.+||.-+.. .++.+-.+.+++.++.
T Consensus 310 ~frWS~DdKy~Arm~~~sisIyEtpsf~lld~Kslki~gIr~FswsP-~~~llAYwtpe~~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 310 IFRWSHDDKYFARMTGNSISIYETPSFMLLDKKSLKISGIRDFSWSP-TSNLLAYWTPETNNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred eEEeccCCceeEEeccceEEEEecCceeeecccccCCccccCcccCC-CcceEEEEcccccCCcceEEEEecCccceeee
Confidence 36789999999998889999999988666544444456799999999 88999876532 3678888888887777
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeC-------C---CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGA-------D---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~-------D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
-.-|.-.=..|-|-.+|.+|+.--. - ..+.|+.+..... ....+. -...+...+|-|.|..+++
T Consensus 389 ~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdI-pve~ve-----lke~vi~FaWEP~gdkF~v 462 (698)
T KOG2314|consen 389 KNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDI-PVEVVE-----LKESVIAFAWEPHGDKFAV 462 (698)
T ss_pred ccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCC-Cceeee-----cchheeeeeeccCCCeEEE
Confidence 6655544455777788888875321 1 1244555543221 111111 1157889999999999888
Q ss_pred --Ee--CCeEEEEEcCC-ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe---CCCcEEEEeCCCCceeEeeCCCCcCC
Q 001319 954 --VH--ETQLAIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATF---CDGNIGVFDADTLRLRCYIAPSTYLS 1025 (1101)
Q Consensus 954 --~~--d~~i~v~d~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~ 1025 (1101)
+. ..++.+|..++ ..........+ ....+.+.|||.|++++.+. ..|.+.++|.....+...-
T Consensus 463 i~g~~~k~tvsfY~~e~~~~~~~lVk~~d--k~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~------- 533 (698)
T KOG2314|consen 463 ISGNTVKNTVSFYAVETNIKKPSLVKELD--KKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTA------- 533 (698)
T ss_pred EEccccccceeEEEeecCCCchhhhhhhc--ccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhcc-------
Confidence 33 46789998873 32222222222 45678999999999988754 5789999998853332221
Q ss_pred CcccCCCCccceEEEEEecCCCCEEEEEEC------CCeEEEEeCCCCC
Q 001319 1026 PSVLNGSQTVYPLVVAAHPLEPNQFAIGLT------DGSVKVMEPSESE 1068 (1101)
Q Consensus 1026 ~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~------Dg~v~iWd~~~~~ 1068 (1101)
|......+.+.|.| -|++++|++. |..-++|++....
T Consensus 534 -----~~eh~~at~veWDP-tGRYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 534 -----SPEHFAATEVEWDP-TGRYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred -----CccccccccceECC-CCCEEEEeeehhhhccccceEEEEeecHH
Confidence 11112335799999 4999999885 5667888886544
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.36 E-value=6e-11 Score=117.30 Aligned_cols=155 Identities=11% Similarity=0.198 Sum_probs=108.9
Q ss_pred eEEEEecCCCCEEEEEeC----------CCcEEEEEeecc-eEEEeec-cCCCCeeEEEEcCCCCEEEEE--eCCCcEEE
Q 001319 849 TFLAFHPQDNNIIAIGTE----------DSTIHIYNVRVD-EVKSKLK-GHQKRITGLAFSTSLNILVSS--GADAQLCV 914 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~----------dg~v~iwd~~~~-~~~~~~~-~h~~~V~~l~~s~d~~~l~s~--s~Dg~v~l 914 (1101)
..+.|++ .|.+|++-.. -|...+|.++.. .....+. ...++|.+++|+|+|+.+++. ..++.|.+
T Consensus 9 ~~~~W~~-~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~l 87 (194)
T PF08662_consen 9 AKLHWQP-SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTL 87 (194)
T ss_pred EEEEecc-cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEE
Confidence 3567888 6655544332 134556666332 2333333 244679999999999987654 46789999
Q ss_pred EECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe----CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc
Q 001319 915 WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC 990 (1101)
Q Consensus 915 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~ 990 (1101)
||++. +.. ..... ..+..+.|+|+|++|++++ .|.+.+||..+.+.+.... ...++.++|||
T Consensus 88 yd~~~-~~i-----~~~~~---~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~-----~~~~t~~~WsP 153 (194)
T PF08662_consen 88 YDVKG-KKI-----FSFGT---QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE-----HSDATDVEWSP 153 (194)
T ss_pred EcCcc-cEe-----EeecC---CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc-----cCcEEEEEEcC
Confidence 99962 221 11111 4667899999999999964 4689999999988887765 33579999999
Q ss_pred CCCEEEEEeC------CCcEEEEeCCCCceeEeeC
Q 001319 991 NSQLVFATFC------DGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 991 dg~~l~s~~~------dg~i~vwd~~~~~~~~~~~ 1019 (1101)
||++++++.. |+.++||+.. |+++....
T Consensus 154 dGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~~~~ 187 (194)
T PF08662_consen 154 DGRYLATATTSPRLRVDNGFKIWSFQ-GRLLYKKP 187 (194)
T ss_pred CCCEEEEEEeccceeccccEEEEEec-CeEeEecc
Confidence 9999998764 7889999985 66665543
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-09 Score=115.01 Aligned_cols=322 Identities=12% Similarity=0.179 Sum_probs=196.8
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC-----------CCc
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-----------DSQ 608 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-----------dg~ 608 (1101)
.-+-+.|||.|.||++-. ..-|.+|--.+...++.|.. . .+.-+.|||..+||++-+. ...
T Consensus 212 Tetyv~wSP~GTYL~t~H-----k~GI~lWGG~~f~r~~RF~H-p--~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~ 283 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFH-----KQGIALWGGESFDRIQRFYH-P--GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQ 283 (698)
T ss_pred eeeeEEecCCceEEEEEe-----ccceeeecCccHHHHHhccC-C--CceeeecCCccceEEEecCCccccCcccCCCce
Confidence 346789999999999986 44589998777666666542 2 5777999999999999552 257
Q ss_pred EEEEECCCCeeeEeeccCCCC-CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeee
Q 001319 609 IKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1101)
+.|||+.+|.....+...... ..-.-..||.|++++|.... ..|.||+..+- ..+....
T Consensus 284 l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf----~lld~Ks--------------- 343 (698)
T KOG2314|consen 284 LIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF----MLLDKKS--------------- 343 (698)
T ss_pred EEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce----eeecccc---------------
Confidence 999999999998887663222 22345789999999987776 46778775432 1111100
Q ss_pred ccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 688 SASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 688 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
-.-..|....|+|.+
T Consensus 344 -----------------------------------------------lki~gIr~FswsP~~------------------ 358 (698)
T KOG2314|consen 344 -----------------------------------------------LKISGIRDFSWSPTS------------------ 358 (698)
T ss_pred -----------------------------------------------cCCccccCcccCCCc------------------
Confidence 022233344444443
Q ss_pred CCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc---C---CeEEEEECCCceEEEEe
Q 001319 768 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---G---GKISLFNMMTFKVMTTF 841 (1101)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---d---g~i~vwd~~~~~~~~~~ 841 (1101)
.+||.-. + .++.+..+.+++.+++-
T Consensus 359 -------------------------------------------------~llAYwtpe~~~~parvtL~evPs~~~iRt~ 389 (698)
T KOG2314|consen 359 -------------------------------------------------NLLAYWTPETNNIPARVTLMEVPSKREIRTK 389 (698)
T ss_pred -------------------------------------------------ceEEEEcccccCCcceEEEEecCccceeeec
Confidence 3333221 0 12344444444444443
Q ss_pred eCCCCCeeEEEEecCCCCEEEEE----------eCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCC--
Q 001319 842 MSPPPASTFLAFHPQDNNIIAIG----------TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD-- 909 (1101)
Q Consensus 842 ~~~~~~i~~l~~s~~~~~~la~g----------~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D-- 909 (1101)
..+.-.=..+-|-. .|.+|+.- +.-..+.|+.+......-..-.-...|...+|-|.|..+++-+..
T Consensus 390 nlfnVsDckLhWQk-~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~velke~vi~FaWEP~gdkF~vi~g~~~ 468 (698)
T KOG2314|consen 390 NLFNVSDCKLHWQK-SGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVELKESVIAFAWEPHGDKFAVISGNTV 468 (698)
T ss_pred cceeeeccEEEecc-CCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeecchheeeeeeccCCCeEEEEEcccc
Confidence 33322222334444 44444432 222246667666544322222345779999999999987776543
Q ss_pred -CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE----eCCeEEEEEcCCceeeeEeccCCCCCCCEE
Q 001319 910 -AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAIYDASKMERIRQWTPQDALSAPIS 984 (1101)
Q Consensus 910 -g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~----~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~ 984 (1101)
.++.+|.+.+....... +..... ...+.+.|+|.|++++++ ..|.+.++|++-..+...-.+. -...+
T Consensus 469 k~tvsfY~~e~~~~~~~l-Vk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~e---h~~at 541 (698)
T KOG2314|consen 469 KNTVSFYAVETNIKKPSL-VKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPE---HFAAT 541 (698)
T ss_pred ccceeEEEeecCCCchhh-hhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCcc---ccccc
Confidence 57999998852221111 111111 457789999999999984 3788999999853332222221 24567
Q ss_pred EEEEccCCCEEEEEeC------CCcEEEEeCCC
Q 001319 985 CAVYSCNSQLVFATFC------DGNIGVFDADT 1011 (1101)
Q Consensus 985 ~v~~s~dg~~l~s~~~------dg~i~vwd~~~ 1011 (1101)
.+.|.|.|+|++|++. |.-.++|+...
T Consensus 542 ~veWDPtGRYvvT~ss~wrhk~d~GYri~tfqG 574 (698)
T KOG2314|consen 542 EVEWDPTGRYVVTSSSSWRHKVDNGYRIFTFQG 574 (698)
T ss_pred cceECCCCCEEEEeeehhhhccccceEEEEeec
Confidence 8999999999999874 44566666653
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.2e-10 Score=133.48 Aligned_cols=236 Identities=13% Similarity=0.064 Sum_probs=145.2
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEecc--CcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|-.+.--......+.+...+...+|||||++|+.+...+ ..|.+||+.+++... +..
T Consensus 181 l~~~d~~g~~~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~--------------------l~~ 240 (430)
T PRK00178 181 LQRSDYDGARAVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ--------------------ITN 240 (430)
T ss_pred EEEECCCCCCceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE--------------------ccC
Confidence 4444433334445556788999999999999775554333 368899998876532 222
Q ss_pred CCccEEEEEEccCCCEEEEE-ECCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--eEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~i 479 (1101)
..+.+...+|||||++|+.. +.++ .|.+||+.+++.. .+..+........|+|||+. ++++...++ .|.+
T Consensus 241 ~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~----~lt~~~~~~~~~~~spDg~~-i~f~s~~~g~~~iy~ 315 (430)
T PRK00178 241 FEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS----RVTNHPAIDTEPFWGKDGRT-LYFTSDRGGKPQIYK 315 (430)
T ss_pred CCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeE----EcccCCCCcCCeEECCCCCE-EEEEECCCCCceEEE
Confidence 23345578999999998854 4444 6888899887643 24456666777899999995 333444444 5777
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
+| .+++ ...+...........|+| +|+.|+..+. ++ .|.+||+.+++....... .......|+|||+.++.
T Consensus 316 ~d~~~g~-~~~lt~~~~~~~~~~~Sp--dg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~--~~~~~p~~spdg~~i~~ 390 (430)
T PRK00178 316 VNVNGGR-AERVTFVGNYNARPRLSA--DGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT--SLDESPSVAPNGTMLIY 390 (430)
T ss_pred EECCCCC-EEEeecCCCCccceEECC--CCCEEEEEEccCCceEEEEEECCCCCEEEccCC--CCCCCceECCCCCEEEE
Confidence 77 4554 333332222233456766 5567766554 33 578889887665433222 22335689999999988
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
.+. ..+...|.+++... ...+.+....+ .+...+|+|
T Consensus 391 ~~~-~~g~~~l~~~~~~g-~~~~~l~~~~g-~~~~p~ws~ 427 (430)
T PRK00178 391 ATR-QQGRGVLMLVSING-RVRLPLPTAQG-EVREPSWSP 427 (430)
T ss_pred EEe-cCCceEEEEEECCC-CceEECcCCCC-CcCCCccCC
Confidence 764 23455688888753 33334443222 344455655
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.35 E-value=3.8e-10 Score=127.03 Aligned_cols=227 Identities=12% Similarity=0.075 Sum_probs=141.6
Q ss_pred cccCCccEEEEEEccCCCEEE---EEECC--CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC---
Q 001319 402 FKDVPISVSRVAWSPDGNYVG---VAFTK--HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--- 473 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~la---s~~~d--~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~--- 473 (1101)
+......+.+-+|||||+.++ +...+ ..|.+.++.+|+..+ +....+.....+|+|||++ ++++...
T Consensus 180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~----lt~~~g~~~~p~wSPDG~~-Laf~s~~~g~ 254 (428)
T PRK01029 180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKK----ILALQGNQLMPTFSPRKKL-LAFISDRYGN 254 (428)
T ss_pred cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceE----eecCCCCccceEECCCCCE-EEEEECCCCC
Confidence 333455677889999998633 33333 358888998876443 3344555667899999996 3333322
Q ss_pred -CceEEEEE-cC---CceeEEeecCCcCeEEEecccCCCccEEEEec-cCCeEEEEec--CC-CCeeeeccCCCCceEEE
Q 001319 474 -DKLIKVWE-LS---GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLY--DT-MGSRVDYDAPGHWCTTM 544 (1101)
Q Consensus 474 -d~~v~iwd-~~---~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~--~~-~~~~~~~~~~~~~v~~~ 544 (1101)
|..+.+|+ .. ++......++.+.....+|+| ||+.|+..+ .+|...+|.+ +. +.....+......+...
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSP--DG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p 332 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSP--DGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCP 332 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECC--CCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccce
Confidence 33455577 33 232222323333445678877 667666554 5676566644 32 22233344444567789
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC---CCcEEEEECCCCeeeE
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---DSQIKFWDMDNVNILT 621 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---dg~i~iwd~~~~~~~~ 621 (1101)
.|||||++|+..+.. ++...|.+||+.+++......+ . ..+....|+|||+.|+.... ...|+++|+.+++...
T Consensus 333 ~wSPDG~~Laf~~~~-~g~~~I~v~dl~~g~~~~Lt~~-~-~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 333 AWSPDGKKIAFCSVI-KGVRQICVYDLATGRDYQLTTS-P-ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred eECCCCCEEEEEEcC-CCCcEEEEEECCCCCeEEccCC-C-CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 999999999987642 3456799999998876554433 2 24566889999998886542 4578999998877655
Q ss_pred eeccCCCCCCCCeeEEecCC
Q 001319 622 STDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 622 ~~~~~~~~~~v~~v~~s~~g 641 (1101)
.....+ .+...+|+|-.
T Consensus 410 Lt~~~g---~~~~p~Ws~~~ 426 (428)
T PRK01029 410 IVIGSG---EKRFPSWGAFP 426 (428)
T ss_pred eecCCC---cccCceecCCC
Confidence 443322 35677888743
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.35 E-value=2.3e-10 Score=131.22 Aligned_cols=210 Identities=16% Similarity=0.104 Sum_probs=139.2
Q ss_pred cccCCccEEEEEEccCCCEEEEEECC---CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--e
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTK---HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--L 476 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d---~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~ 476 (1101)
+..+...+.+.+|||||++||.+..+ ..|++||+.+++... +..+.+.+.+++|+|||+. ++++.+.++ .
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~----~~~~~~~~~~~~~spDg~~-l~~~~~~~~~~~ 259 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK----VASFPGMNGAPAFSPDGSK-LAVSLSKDGNPD 259 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----eecCCCCccceEECCCCCE-EEEEECCCCCcc
Confidence 44566678999999999999987654 479999999875432 3455666778999999985 344555444 5
Q ss_pred EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 477 IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 477 v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
|.+||..+.....+..+........|++ ||+.|+..+. ++ .|.+|++.+++.. .+......+..+.|+|+|+++
T Consensus 260 i~~~d~~~~~~~~l~~~~~~~~~~~~s~--dg~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~~~~~~~~~~~~spdg~~i 336 (417)
T TIGR02800 260 IYVMDLDGKQLTRLTNGPGIDTEPSWSP--DGKSIAFTSDRGGSPQIYMMDADGGEVR-RLTFRGGYNASPSWSPDGDLI 336 (417)
T ss_pred EEEEECCCCCEEECCCCCCCCCCEEECC--CCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccCeEECCCCCEE
Confidence 8888854444555655555555667766 6677765543 33 5777777665433 333345567788999999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC---cEEEEECCCCeeeEeec
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~ 624 (1101)
+.+.... +...|.+||+.++........ . ......|+|++++|+..+.++ .+++.+.. +.....+.
T Consensus 337 ~~~~~~~-~~~~i~~~d~~~~~~~~l~~~-~--~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 337 AFVHREG-GGFNIAVMDLDGGGERVLTDT-G--LDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EEEEccC-CceEEEEEeCCCCCeEEccCC-C--CCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeECC
Confidence 9876522 234799999988654333222 1 233467999999998876543 45555543 44444443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.1e-10 Score=132.64 Aligned_cols=224 Identities=15% Similarity=0.112 Sum_probs=137.1
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
..+.+...+.+.+|||||++++.+...++ .|.+||+.+++... +....+.....+|||
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~--------------------lt~~~g~~~~~~wSP 271 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK--------------------VTSFPGINGAPRFSP 271 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE--------------------ecCCCCCcCCeeECC
Confidence 44456778999999999997755543333 58888988776432 111122344689999
Q ss_pred CCCEEEEE-ECCCe--EEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--eEEEEE-cCCceeEEe
Q 001319 417 DGNYVGVA-FTKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKVWE-LSGRKLFNF 490 (1101)
Q Consensus 417 dg~~las~-~~d~~--i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~iwd-~~~~~~~~~ 490 (1101)
||+.||.. +.++. |.+||+++++.. .+..+.......+|+|||+. ++++...++ .|.++| .+++ ...+
T Consensus 272 DG~~La~~~~~~g~~~Iy~~dl~tg~~~----~lt~~~~~~~~p~wSpDG~~-I~f~s~~~g~~~Iy~~dl~~g~-~~~L 345 (448)
T PRK04792 272 DGKKLALVLSKDGQPEIYVVDIATKALT----RITRHRAIDTEPSWHPDGKS-LIFTSERGGKPQIYRVNLASGK-VSRL 345 (448)
T ss_pred CCCEEEEEEeCCCCeEEEEEECCCCCeE----ECccCCCCccceEECCCCCE-EEEEECCCCCceEEEEECCCCC-EEEE
Confidence 99988764 55564 788888877533 34455566788999999995 334444444 456666 4444 3333
Q ss_pred ecCCcCeEEEecccCCCccEEEEecc-CC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 491 EGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
..........+|+| ||++|+..+. ++ .|.++|+.++..... ... .......|+|||+.++.... .++...++
T Consensus 346 t~~g~~~~~~~~Sp--DG~~l~~~~~~~g~~~I~~~dl~~g~~~~l-t~~-~~d~~ps~spdG~~I~~~~~-~~g~~~l~ 420 (448)
T PRK04792 346 TFEGEQNLGGSITP--DGRSMIMVNRTNGKFNIARQDLETGAMQVL-TST-RLDESPSVAPNGTMVIYSTT-YQGKQVLA 420 (448)
T ss_pred ecCCCCCcCeeECC--CCCEEEEEEecCCceEEEEEECCCCCeEEc-cCC-CCCCCceECCCCCEEEEEEe-cCCceEEE
Confidence 32222234457766 5567766544 44 345567666654332 211 12234589999999987764 23455688
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
+++. +|...+.+....+ .+...+|+|
T Consensus 421 ~~~~-~G~~~~~l~~~~g-~~~~p~Wsp 446 (448)
T PRK04792 421 AVSI-DGRFKARLPAGQG-EVKSPAWSP 446 (448)
T ss_pred EEEC-CCCceEECcCCCC-CcCCCccCC
Confidence 8887 4555555554433 455566765
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.3e-10 Score=133.44 Aligned_cols=224 Identities=17% Similarity=0.133 Sum_probs=143.7
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEecc--CcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN--GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d--~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|..+.-.......+.+...+.+.+|||||++++.+...+ ..|.+||+.+++... +..
T Consensus 172 l~~~d~~g~~~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~--------------------~~~ 231 (417)
T TIGR02800 172 LQVADYDGANPQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK--------------------VAS 231 (417)
T ss_pred EEEEcCCCCCCEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE--------------------eec
Confidence 4544433334455556777899999999999765443222 479999998875432 233
Q ss_pred CCccEEEEEEccCCCEEEEE-ECCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--eEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVA-FTKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIKV 479 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~-~~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~i 479 (1101)
+.+.+.+++|+|||+.|+.. +.++ .|.+||+.+++.. .+..+.......+|+|||+. ++++...++ .|.+
T Consensus 232 ~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~----~l~~~~~~~~~~~~s~dg~~-l~~~s~~~g~~~iy~ 306 (417)
T TIGR02800 232 FPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLT----RLTNGPGIDTEPSWSPDGKS-IAFTSDRGGSPQIYM 306 (417)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEE----ECCCCCCCCCCEEECCCCCE-EEEEECCCCCceEEE
Confidence 44567789999999988754 3333 5888999886533 24445555667899999995 233333333 5777
Q ss_pred EEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCC---eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+|..+.....+..+...+....|++ +|++++.++.++ .|.+||+.++..... ... .......|+|||++|+..
T Consensus 307 ~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~i~~~~~~~~~~~i~~~d~~~~~~~~l-~~~-~~~~~p~~spdg~~l~~~ 382 (417)
T TIGR02800 307 MDADGGEVRRLTFRGGYNASPSWSP--DGDLIAFVHREGGGFNIAVMDLDGGGERVL-TDT-GLDESPSFAPNGRMILYA 382 (417)
T ss_pred EECCCCCEEEeecCCCCccCeEECC--CCCEEEEEEccCCceEEEEEeCCCCCeEEc-cCC-CCCCCceECCCCCEEEEE
Confidence 7844444555555556677778876 567888777765 788888877544332 222 234566899999999887
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEec
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
... ++...+.+.+.. ++....+.
T Consensus 383 ~~~-~~~~~l~~~~~~-g~~~~~~~ 405 (417)
T TIGR02800 383 TTR-GGRGVLGLVSTD-GRFRARLP 405 (417)
T ss_pred EeC-CCcEEEEEEECC-CceeeECC
Confidence 752 233456666643 33344443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.31 E-value=4.9e-10 Score=110.92 Aligned_cols=167 Identities=13% Similarity=0.246 Sum_probs=117.5
Q ss_pred CCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCc-eE--EEEeeCCC-----CCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 802 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF-KV--MTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~-~~--~~~~~~~~-----~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
.|...|.++.++.|+..+.+++|=+|.+|+++-- +. +..++.+. .-|++..|+|....+++..+..|+|++-
T Consensus 162 aHtyhiNSIS~NsD~Et~lSADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 162 AHTYHINSISVNSDKETFLSADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred cceeEeeeeeecCccceEeeccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 4888999999999999999999999999998622 11 22233332 3489999999778899999999999999
Q ss_pred EeecceE------EEe----------eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CccccceEEeec-----
Q 001319 874 NVRVDEV------KSK----------LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSVTIHIP----- 931 (1101)
Q Consensus 874 d~~~~~~------~~~----------~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~-~~~~~~~~~~~~----- 931 (1101)
|+....+ +.. +.+--..|.++.|+++|+++++-+. -+|++||+.. .+...+..++..
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHH
Confidence 9984321 111 1112346899999999999998654 4799999943 233333322211
Q ss_pred ----CCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCcee
Q 001319 932 ----AGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER 969 (1101)
Q Consensus 932 ----~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~ 969 (1101)
+....-.-..++|+.++.++++|+ .+-+++|+...|..
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gsk 363 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGSK 363 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCcc
Confidence 111112234689999999999976 88899999776643
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.2e-08 Score=108.37 Aligned_cols=239 Identities=9% Similarity=0.049 Sum_probs=151.9
Q ss_pred ecCCCCeEEEEc-----------CCeEEEEECCCceEEEEeeCCCC-------CeeEEEEecCCCCEEEEEe-C-CCcEE
Q 001319 812 LSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPP-------ASTFLAFHPQDNNIIAIGT-E-DSTIH 871 (1101)
Q Consensus 812 ~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~~~~-------~i~~l~~s~~~~~~la~g~-~-dg~v~ 871 (1101)
+||||+.+.++. ++.|.+||+.+++.+.++..... ....++++| ||++|++.. . ++.|.
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~-dgk~l~V~n~~p~~~V~ 131 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTP-DNKTLLFYQFSPSPAVG 131 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECC-CCCEEEEecCCCCCEEE
Confidence 999999876653 36799999999999988875322 234789999 888888766 3 68999
Q ss_pred EEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcC-CCCE
Q 001319 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-DQVR 950 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~ 950 (1101)
+.|+.+++.+.++.--. ...-...+++. .+ +-+.||......+.+.............+...--...-.|.+ ||++
T Consensus 132 VvD~~~~kvv~ei~vp~-~~~vy~t~e~~-~~-~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~ 208 (352)
T TIGR02658 132 VVDLEGKAFVRMMDVPD-CYHIFPTANDT-FF-MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRL 208 (352)
T ss_pred EEECCCCcEEEEEeCCC-CcEEEEecCCc-cE-EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcE
Confidence 99999999998876421 22222222222 22 223444444433332221111111111110000000114455 8999
Q ss_pred EEEEeCCeEEEEEcCC-----ceeeeEeccCC----CCCCCEEEEEEccCCCEEEEEe----------CCCcEEEEeCCC
Q 001319 951 MLVVHETQLAIYDASK-----MERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF----------CDGNIGVFDADT 1011 (1101)
Q Consensus 951 l~~~~d~~i~v~d~~~-----~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~s~~----------~dg~i~vwd~~~ 1011 (1101)
+.++..|.|.+.|+.. .+.+..+.... -..+.+.-+++++||+++++.. ..+.|.++|..+
T Consensus 209 ~~vs~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t 288 (352)
T TIGR02658 209 VWPTYTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKT 288 (352)
T ss_pred EEEecCCeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCC
Confidence 9888889999999543 33333222110 0133444599999999988743 225799999999
Q ss_pred CceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC-EEEEEE-CCCeEEEEeCCCCC
Q 001319 1012 LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGL-TDGSVKVMEPSESE 1068 (1101)
Q Consensus 1012 ~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~-~l~s~~-~Dg~v~iWd~~~~~ 1068 (1101)
++.+.++.. +. .+..++++| |+. +|++.. .++.|.+.|..+++
T Consensus 289 ~kvi~~i~v-----------G~--~~~~iavS~-Dgkp~lyvtn~~s~~VsViD~~t~k 333 (352)
T TIGR02658 289 GKRLRKIEL-----------GH--EIDSINVSQ-DAKPLLYALSTGDKTLYIFDAETGK 333 (352)
T ss_pred CeEEEEEeC-----------CC--ceeeEEECC-CCCeEEEEeCCCCCcEEEEECcCCe
Confidence 999998873 22 446899999 566 666555 68899999999987
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=6.9e-10 Score=118.72 Aligned_cols=193 Identities=13% Similarity=0.174 Sum_probs=154.0
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEe------c------------CCCceEEEEecCCce
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA------Y------------PNKLLCVVTCGDDKL 476 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s------~------------d~~~~~l~s~~~d~~ 476 (1101)
.|-+.|+|....||.+++||...++....+.....-.+..++..|. | .+....++-|...|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~ 81 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS 81 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence 3567899999999999999999987654333332334445555553 1 112237888999999
Q ss_pred EEEEE-cCCceeEEee--cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEE
Q 001319 477 IKVWE-LSGRKLFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 477 v~iwd-~~~~~~~~~~--~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
|.+++ ..|+....+. +|.+.|.++.++. +-..|.+++.|+.+..|+................+.+++++|||+.+
T Consensus 82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~--~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l 159 (541)
T KOG4547|consen 82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQ--RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKIL 159 (541)
T ss_pred EEEEEecCCeEEEEEecCCCCCcceeeeccc--ccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEE
Confidence 99999 8888777776 5999999998865 44689999999999999999988888888888889999999999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC-----CCEEEEE-eCCCcEEEEECCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT-----QNHFLAV-GEDSQIKFWDMDN 616 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~~l~~~-~~dg~i~iwd~~~ 616 (1101)
++++ +.|.+||+++++.+.+|.||.. .+.+++|..+ |.+++++ ..+..+.+|-...
T Consensus 160 ~~as------~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 160 LTAS------RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred Eecc------ceEEEEEccCceEEEEecCCCc-ceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 9985 4799999999999999999988 8999999876 6777774 4666778886554
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.2e-08 Score=114.79 Aligned_cols=295 Identities=13% Similarity=0.092 Sum_probs=175.7
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEE
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML 545 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~ 545 (1101)
.++.++.++.|..+| .+|+.+..+.-.......... ++..++.++.++.+..+|..+++................
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p~ 142 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDERLSGGVGA----DGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPPL 142 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCCCcccceEE----cCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCCE
Confidence 577788899999999 899988766543322222222 345788889999999999999988877654433222222
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc----eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1101)
. .+..++.+.. ++.|..||.++|+.+-.+....... .....+. +..++.+..+|.++.+|..+|+.+.
T Consensus 143 v--~~~~v~v~~~----~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W 214 (377)
T TIGR03300 143 V--ANGLVVVRTN----DGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLW 214 (377)
T ss_pred E--ECCEEEEECC----CCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEee
Confidence 2 2345555443 7889999999999877765432200 0111122 3477788888999999999998776
Q ss_pred eeccCCCC--CCC---CeeEEec--CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccc
Q 001319 622 STDAEGGL--PNL---PRLRFSK--EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 622 ~~~~~~~~--~~v---~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
........ ..+ ..+.-+| .+..+++++.+|.+..||..++..
T Consensus 215 ~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~------------------------------- 263 (377)
T TIGR03300 215 EQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRV------------------------------- 263 (377)
T ss_pred eeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcE-------------------------------
Confidence 54321100 000 0000011 233455555555555555544310
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCC
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 774 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~ 774 (1101)
+|.
T Consensus 264 --------------------------------------------------------------------~W~--------- 266 (377)
T TIGR03300 264 --------------------------------------------------------------------LWK--------- 266 (377)
T ss_pred --------------------------------------------------------------------EEe---------
Confidence 011
Q ss_pred CCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-cCCeEEEEECCCceEEEEeeCC-CCCeeEEE
Q 001319 775 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-TGGKISLFNMMTFKVMTTFMSP-PPASTFLA 852 (1101)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-~dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~ 852 (1101)
...+ .. ...++ ++..+.++ .+|.+..+|..+++.+...... ........
T Consensus 267 -------------~~~~----------~~----~~p~~--~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~ 317 (377)
T TIGR03300 267 -------------RDAS----------SY----QGPAV--DDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA 317 (377)
T ss_pred -------------eccC----------Cc----cCceE--eCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence 0000 00 01111 23344444 4788999999888877665321 22223333
Q ss_pred EecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeE-EEEcCCCCEEEEEeCCCcEEEE
Q 001319 853 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVW 915 (1101)
Q Consensus 853 ~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~d~~~l~s~s~Dg~v~lw 915 (1101)
. .+..|++++.+|.|+++|..+|+.+.++..+...+.. .++. + ..|+.++.||.|..+
T Consensus 318 i---~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 318 V---VGGYLVVGDFEGYLHWLSREDGSFVARLKTDGSGIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred E---ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 3 2457888999999999999999999888766654333 2333 3 458889999988765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.20 E-value=2.5e-09 Score=114.46 Aligned_cols=191 Identities=18% Similarity=0.316 Sum_probs=147.7
Q ss_pred CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE------cc------------
Q 001319 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW------SP------------ 416 (1101)
Q Consensus 355 dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~------sp------------ 416 (1101)
.+. ++|....||.++||+..+++.... |. | ...-++..++.+| +|
T Consensus 4 ~~~-~~A~~~~~g~l~iw~t~~~~~~~e--~~---------p-----~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~ 66 (541)
T KOG4547|consen 4 ALD-YFALSTGDGRLRIWDTAKNQLQQE--FA---------P-----IASLSGTCTYTKWGLSADYSPMKWLSLEKAKKA 66 (541)
T ss_pred hhh-eEeecCCCCeEEEEEccCceeeee--ec---------c-----chhccCcceeEEEEEEeccchHHHHhHHHHhhc
Confidence 344 568889999999999998876432 11 0 0001223333333 22
Q ss_pred --CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 417 --DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 417 --dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
|-..+|-|...|.|.+|++..|+....+ .-.+|.+.|+++.++.+-. .|.|++.|+.+..|+ .+++.++.+.+.
T Consensus 67 s~~t~~lvlgt~~g~v~~ys~~~g~it~~~-st~~h~~~v~~~~~~~~~~--ciyS~~ad~~v~~~~~~~~~~~~~~~~~ 143 (541)
T KOG4547|consen 67 SLDTSMLVLGTPQGSVLLYSVAGGEITAKL-STDKHYGNVNEILDAQRLG--CIYSVGADLKVVYILEKEKVIIRIWKEQ 143 (541)
T ss_pred cCCceEEEeecCCccEEEEEecCCeEEEEE-ecCCCCCcceeeecccccC--ceEecCCceeEEEEecccceeeeeeccC
Confidence 3446777889999999999999865532 3358999999999998888 899999999999999 888889999999
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC-----CCEEEEeecCCCCCceEEE
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD-----GSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~~~~~~~~~i~i 568 (1101)
...+.++++++ ||..+++++ ++|++||+++.+....+.+|..+|++++|..+ |.+++++.. .+.-+.+
T Consensus 144 ~~~~~sl~is~--D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~---~~r~i~~ 216 (541)
T KOG4547|consen 144 KPLVSSLCISP--DGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAA---AERGITV 216 (541)
T ss_pred CCccceEEEcC--CCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccc---cccceeE
Confidence 99999999977 578888776 68999999999999999999999999999887 788887653 3445666
Q ss_pred EeCC
Q 001319 569 WNES 572 (1101)
Q Consensus 569 wd~~ 572 (1101)
|-.+
T Consensus 217 w~v~ 220 (541)
T KOG4547|consen 217 WVVE 220 (541)
T ss_pred EEEE
Confidence 6544
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=99.19 E-value=2.6e-08 Score=112.09 Aligned_cols=212 Identities=7% Similarity=0.059 Sum_probs=130.2
Q ss_pred eEEEEcCCeEEEEECCCceEEEEeeCCCCCe-----eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC---
Q 001319 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPAS-----TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK--- 889 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~--- 889 (1101)
+++...+|.+..||.++|+.+..+....... .+..+. + ..++.+..+|.++.+|..+|+.+........
T Consensus 148 v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~ 224 (377)
T TIGR03300 148 VVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGR 224 (377)
T ss_pred EEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeeccccCCCC
Confidence 3333347888888888888877765432211 112222 3 3677888899999999999987654321100
Q ss_pred -C------e-eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEE
Q 001319 890 -R------I-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLA 960 (1101)
Q Consensus 890 -~------V-~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~ 960 (1101)
. + ....+ .+..++.++.+|.+..||..+|+..-.... ....... .++..+.+ ..++.+.
T Consensus 225 ~~~~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~--------~~~~~p~--~~~~~vyv~~~~G~l~ 292 (377)
T TIGR03300 225 TELERLVDVDGDPVV--DGGQVYAVSYQGRVAALDLRSGRVLWKRDA--------SSYQGPA--VDDNRLYVTDADGVVV 292 (377)
T ss_pred CchhhhhccCCccEE--ECCEEEEEEcCCEEEEEECCCCcEEEeecc--------CCccCce--EeCCEEEEECCCCeEE
Confidence 0 0 11112 245788888899999999999875433221 1111122 23444544 5689999
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
.+|..+++.+....... .....+... .+.+|++++.+|.|+++|..+|+.+.++... ...+. .+-
T Consensus 293 ~~d~~tG~~~W~~~~~~--~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~----------~~~~~-~sp 357 (377)
T TIGR03300 293 ALDRRSGSELWKNDELK--YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARLKTD----------GSGIA-SPP 357 (377)
T ss_pred EEECCCCcEEEcccccc--CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC----------CCccc-cCC
Confidence 99999998775543211 112222222 4678999999999999999999999877631 11111 011
Q ss_pred EEecCCCCEEEEEECCCeEEEE
Q 001319 1041 AAHPLEPNQFAIGLTDGSVKVM 1062 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~v~iW 1062 (1101)
+.. ++.|+.++.||.|..|
T Consensus 358 ~~~---~~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 358 VVV---GDGLLVQTRDGDLYAF 376 (377)
T ss_pred EEE---CCEEEEEeCCceEEEe
Confidence 111 3458889999999876
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.11 E-value=4.1e-10 Score=133.80 Aligned_cols=223 Identities=19% Similarity=0.305 Sum_probs=168.0
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+-..|.++.=+|...++ +||+.||.|++|.+..++.+.. |+ -.|. ..|+.+.|+.+|..+
T Consensus 2206 ~~v~~v~r~~sHp~~~~Y-ltgs~dgsv~~~~w~~~~~v~~-----~r------------t~g~-s~vtr~~f~~qGnk~ 2266 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYY-LTGSQDGSVRMFEWGHGQQVVC-----FR------------TAGN-SRVTRSRFNHQGNKF 2266 (2439)
T ss_pred cccCceeeecCCCCCceE-EecCCCceEEEEeccCCCeEEE-----ee------------ccCc-chhhhhhhcccCCce
Confidence 356789999999998865 7999999999999998877652 21 2233 789999999999999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec---CCceEEEEE--cCCceeEEeecCCcC
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE--LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~---~d~~v~iwd--~~~~~~~~~~~h~~~ 496 (1101)
..+..||.+.+|.+.. +.+...+.|.....+..|-. . .+++++ .++.+.+|| ..+..-..-..|.+.
T Consensus 2267 ~i~d~dg~l~l~q~~p----k~~~s~qchnk~~~Df~Fi~--s--~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~g 2338 (2439)
T KOG1064|consen 2267 GIVDGDGDLSLWQASP----KPYTSWQCHNKALSDFRFIG--S--LLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGG 2338 (2439)
T ss_pred eeeccCCceeecccCC----cceeccccCCccccceeeee--h--hhhccccCCCCCcccchhcccCcccceeeeecCCC
Confidence 9999999999999882 33346778999999999986 3 456654 677999999 444433333889999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
++++++.|. .++|++|+.+|.|++||++..+.+..+.. +. ...++++++. .|.++||++.....
T Consensus 2339 aT~l~~~P~--~qllisggr~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss----~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2339 ATVLAYAPK--HQLLISGGRKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSS----EGNIKIWRLSEFGL 2402 (2439)
T ss_pred ceEEEEcCc--ceEEEecCCcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCc----ccceEEEEccccch
Confidence 999999885 48999999999999999988777665543 22 4567778775 88999999999888
Q ss_pred EEEecccCCcc-----eE-EEEEeCCCCEEEEEeCCCc
Q 001319 577 KRTYAGFRKKS-----NG-VVQFDTTQNHFLAVGEDSQ 608 (1101)
Q Consensus 577 ~~~~~~~~~~~-----v~-~~~~~~~~~~l~~~~~dg~ 608 (1101)
++++...+... +. .+-+ ...+++++|+.||+
T Consensus 2403 l~~~p~e~ak~gfFr~~g~Q~~v-~~~nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2403 LHTFPSEHAKQGFFRNIGMQINV-GQCNRIFSCGADGT 2439 (2439)
T ss_pred hhcCchhhcccchhhhcCceeee-ccCceEEEecCCCC
Confidence 88776543211 11 1112 23457777777763
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.09 E-value=6.1e-10 Score=116.50 Aligned_cols=241 Identities=12% Similarity=0.216 Sum_probs=168.6
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC-cccc---cceeeecccCcEEEEEEecCCCceEEEEecCCce
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS-NDLR---QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~-~~~~---~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~ 476 (1101)
.+.||+..|..++--.+.+-+++++.|++|++|.++.. ..+. ...+++.|+.+|.++.|..|-+ +++++ |+.
T Consensus 730 nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr--~i~Sc--D~g 805 (1034)
T KOG4190|consen 730 NFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLR--SIASC--DGG 805 (1034)
T ss_pred cccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccc--eeeec--cCc
Confidence 47899999999988888899999999999999999742 2222 2336789999999999999988 56655 899
Q ss_pred EEEEE-cCCceeEEee-----cCCcCeEEEecccCCCccEEEEe-ccCCeEEEEecCCCCeeeec-----cCCCCceEEE
Q 001319 477 IKVWE-LSGRKLFNFE-----GHEAPVYSICPHHKENIQFIFST-AIDGKIKAWLYDTMGSRVDY-----DAPGHWCTTM 544 (1101)
Q Consensus 477 v~iwd-~~~~~~~~~~-----~h~~~v~~v~~~~~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~-----~~~~~~v~~~ 544 (1101)
|++|| .-|+.+..+. +..+.|.++ ++-+..+++.+ +...+|+++|.+..+-..++ .++...++++
T Consensus 806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl---~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~i 882 (1034)
T KOG4190|consen 806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCL---ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAI 882 (1034)
T ss_pred ceeecccccchhHhhhcCcccCCCceeEec---ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEE
Confidence 99999 8887765332 222334443 33344455555 78899999998887655433 3344578999
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEE-EECCCCeeeEee
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF-WDMDNVNILTST 623 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i-wd~~~~~~~~~~ 623 (1101)
+..+.|+.++.+-. .|.|.+.|.++|+.+..++...- ..-.++ .|..+.++....|.++.+ |..-.+......
T Consensus 883 aVa~~GN~lAa~LS----nGci~~LDaR~G~vINswrpmec-dllqla-apsdq~L~~saldHslaVnWhaldgimh~q~ 956 (1034)
T KOG4190|consen 883 AVADKGNKLAAALS----NGCIAILDARNGKVINSWRPMEC-DLLQLA-APSDQALAQSALDHSLAVNWHALDGIMHLQD 956 (1034)
T ss_pred EeccCcchhhHHhc----CCcEEEEecCCCceeccCCcccc-hhhhhc-CchhHHHHhhcccceeEeeehhcCCeeeecc
Confidence 99999999998875 88999999999998877664332 111122 244566777778888888 987777655544
Q ss_pred ccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
+.... +..- .-.-|.-|+++.....+.+|.-
T Consensus 957 kpppe--pahf--lqsvgpSLV~a~~Gn~lgVYad 987 (1034)
T KOG4190|consen 957 KPPPE--PAHF--LQSVGPSLVTAQNGNILGVYAD 987 (1034)
T ss_pred CCCCc--chhh--hhccCceeEEeccCcEEEEEec
Confidence 43221 1111 1123566777776677777753
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.07 E-value=8.1e-08 Score=119.44 Aligned_cols=257 Identities=12% Similarity=0.126 Sum_probs=162.8
Q ss_pred eEEEecCC-CCeEEEEc-CCeEEEEECCCceEEEEeeC--C------------CCCeeEEEEecCCCCEEEEE-eCCCcE
Q 001319 808 PCIALSKN-DSYVMSAT-GGKISLFNMMTFKVMTTFMS--P------------PPASTFLAFHPQDNNIIAIG-TEDSTI 870 (1101)
Q Consensus 808 ~~~~~s~d-g~~la~~~-dg~i~vwd~~~~~~~~~~~~--~------------~~~i~~l~~s~~~~~~la~g-~~dg~v 870 (1101)
..++++++ |.++++-. ++.|.+||.. +..+..+.+ . -.....+++.+ ++..|+++ ..++.|
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~-~gn~LYVaDt~n~~I 648 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNA-KKNLLYVADTENHAL 648 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEeC-CCCEEEEEeCCCceE
Confidence 46788875 44555544 6889999986 444444332 1 12357899998 66655444 456789
Q ss_pred EEEEeecceEEEeecc--C---------------CCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceE---Ee
Q 001319 871 HIYNVRVDEVKSKLKG--H---------------QKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVT---IH 929 (1101)
Q Consensus 871 ~iwd~~~~~~~~~~~~--h---------------~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~---~~ 929 (1101)
+++|+.++.. .++.+ . -.....++|+| ++..+++.+.++.|++||..++....... ..
T Consensus 649 r~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~~~ 727 (1057)
T PLN02919 649 REIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGYER 727 (1057)
T ss_pred EEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCccc
Confidence 9999877653 22211 0 12346899999 56667777788999999998764321000 00
Q ss_pred ecCCC-----CCCCcceEEEcCCCCEEEEE--eCCeEEEEEcCCceeeeEecc-------------CC-----CCCCCEE
Q 001319 930 IPAGK-----TPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERIRQWTP-------------QD-----ALSAPIS 984 (1101)
Q Consensus 930 ~~~~~-----~~~~v~~~~~s~d~~~l~~~--~d~~i~v~d~~~~~~~~~~~~-------------~~-----~h~~~v~ 984 (1101)
...+. .......++++|++..|.++ .++.|++||+.++......-. .. ..-....
T Consensus 728 ~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~ 807 (1057)
T PLN02919 728 NLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPL 807 (1057)
T ss_pred cCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCc
Confidence 00000 11345679999999876664 478999999987653211100 00 0012346
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCC-cCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEe
Q 001319 985 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPST-YLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1063 (1101)
Q Consensus 985 ~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd 1063 (1101)
.++++++|..+++...++.|++||..++.......... ...........-..+..+++++ +++++++-+.+++|++||
T Consensus 808 Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~-dG~lyVaDt~Nn~Irvid 886 (1057)
T PLN02919 808 GVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGE-NGRLFVADTNNSLIRYLD 886 (1057)
T ss_pred eeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeC-CCCEEEEECCCCEEEEEE
Confidence 89999999988888899999999999887654332100 0000000012223567899999 688999999999999999
Q ss_pred CCCCC
Q 001319 1064 PSESE 1068 (1101)
Q Consensus 1064 ~~~~~ 1068 (1101)
+.+++
T Consensus 887 ~~~~~ 891 (1057)
T PLN02919 887 LNKGE 891 (1057)
T ss_pred CCCCc
Confidence 98876
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.3e-07 Score=105.79 Aligned_cols=215 Identities=14% Similarity=-0.001 Sum_probs=128.7
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEec---cCcEEEEecCCCceeccccceeecccccCccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK 403 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~ 403 (1101)
+|-.|.--......+.. +.+..-.|||||+++++..+. +..|.++|+.+++... +.
T Consensus 171 l~~~d~dg~~~~~~~~~-~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~--------------------lt 229 (419)
T PRK04043 171 IVLADYTLTYQKVIVKG-GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK--------------------IA 229 (419)
T ss_pred EEEECCCCCceeEEccC-CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE--------------------Ee
Confidence 55555422222222223 378899999999864443333 3578899998876543 22
Q ss_pred cCCccEEEEEEccCCCEEEEEEC---CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--eEE
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--LIK 478 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~---d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--~v~ 478 (1101)
...+.....+|||||+.|+.... +..|.++|+.+++. + .+..+.+......|+|||+.+++.+ ...+ .|.
T Consensus 230 ~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~---~LT~~~~~d~~p~~SPDG~~I~F~S-dr~g~~~Iy 304 (419)
T PRK04043 230 SSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-T---QITNYPGIDVNGNFVEDDKRIVFVS-DRLGYPNIF 304 (419)
T ss_pred cCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-E---EcccCCCccCccEECCCCCEEEEEE-CCCCCceEE
Confidence 24455667889999998876532 35688889888753 3 2334444344568999999744444 3333 577
Q ss_pred EEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccC---------CeEEEEecCCCCeeeeccCCCCceEEEEEccC
Q 001319 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID---------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d 549 (1101)
+.|..+.....+...... ...|+| ||+.|+..+.. ..|.+.|++++.... +... .......|+||
T Consensus 305 ~~dl~~g~~~rlt~~g~~--~~~~SP--DG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~-LT~~-~~~~~p~~SPD 378 (419)
T PRK04043 305 MKKLNSGSVEQVVFHGKN--NSSVST--YKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRR-LTAN-GVNQFPRFSSD 378 (419)
T ss_pred EEECCCCCeEeCccCCCc--CceECC--CCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEE-CCCC-CCcCCeEECCC
Confidence 777444333333222111 236766 66777655543 267777887765443 3222 23346889999
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
|+.++..... .+...+.+.++...
T Consensus 379 G~~I~f~~~~-~~~~~L~~~~l~g~ 402 (419)
T PRK04043 379 GGSIMFIKYL-GNQSALGIIRLNYN 402 (419)
T ss_pred CCEEEEEEcc-CCcEEEEEEecCCC
Confidence 9998887643 33455777776543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.99 E-value=3.3e-08 Score=96.40 Aligned_cols=192 Identities=17% Similarity=0.115 Sum_probs=134.6
Q ss_pred CCcEEEEEEec---CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 344 GSTVISMDFHP---SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 344 ~~~V~~v~fsp---dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
++.+..|.|.- +|...++-+..+|.|.++.......... ++ ++.. .+-....-.++.|++-|..
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~--L~---------~ls~--~ki~~~~~lslD~~~~~~~ 135 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVH--LR---------GLSS--KKISVVEALSLDISTSGTK 135 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceeeee--ec---------ccch--hhhhheeeeEEEeeccCce
Confidence 34566666652 3443456667788999887654322110 00 0000 0001113567899999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCceeEE-eecCCcCe
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFN-FEGHEAPV 497 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~~~~~-~~~h~~~v 497 (1101)
++++..+|.+.+-+..... +.....+++|.-..+.+.|+....+ ++.+|++|+.+..|| . .++.+.. -+-|...|
T Consensus 136 i~vs~s~G~~~~v~~t~~~-le~vq~wk~He~E~Wta~f~~~~pn-lvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV 213 (339)
T KOG0280|consen 136 IFVSDSRGSISGVYETEMV-LEKVQTWKVHEFEAWTAKFSDKEPN-LVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGV 213 (339)
T ss_pred EEEEcCCCcEEEEecceee-eeecccccccceeeeeeecccCCCc-eEEecCCCceEEEEEecCCcceeeecceeeecce
Confidence 9999999999855554432 3333368899999999999987765 899999999999999 3 5555544 56688899
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 551 (1101)
.+|.-++. .+.++++|+.|..|++||.++......-..-.+.|..+..+|.-.
T Consensus 214 ~SI~ss~~-~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~ 266 (339)
T KOG0280|consen 214 VSIYSSPP-KPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIF 266 (339)
T ss_pred EEEecCCC-CCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhh
Confidence 99987654 568999999999999999997766655555567899999988543
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.3e-09 Score=127.58 Aligned_cols=201 Identities=12% Similarity=0.214 Sum_probs=164.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
++.+-..|.++.=+|...+.++|+.||.|++|....++.+....+. |. ..|+.+.|+.+|. .+..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~-g~-s~vtr~~f~~qGn--k~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTA-GN-SRVTRSRFNHQGN--KFGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeecc-Cc-chhhhhhhcccCC--ceeeeccCCceeecc
Confidence 4446678888888999999999999999999999998877655443 33 8899999999999 688888899999999
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEec---cCCeEEEEecCCCCe-eeeccCCCCceEEEEEccCCCEEEEee
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
...++....+.|......+.|.. ..+++++ .++.+.+||...... -.....|.+.++++++.|....+++|+
T Consensus 2280 ~~pk~~~s~qchnk~~~Df~Fi~----s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASPKPYTSWQCHNKALSDFRFIG----SLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCCcceeccccCCccccceeeee----hhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecC
Confidence 88888888899998888888754 3466654 468899998644322 223367888999999999999999998
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
. +|.|++||++..++.++++. +. ...++++|+..|.++||++.....+..++.
T Consensus 2356 r----~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2356 R----KGEVCLFDIRQRQLRHTFQA----------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred C----cCcEEEeehHHHHHHHHhhh----------hh-hhheeeccCcccceEEEEccccchhhcCch
Confidence 6 89999999998888777764 33 457899999999999999998877776653
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.6e-08 Score=94.37 Aligned_cols=271 Identities=11% Similarity=0.055 Sum_probs=168.9
Q ss_pred cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc---CCC-EEEEEECCCeEEEEeecCCccc
Q 001319 366 NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP---DGN-YVGVAFTKHLIQLYSYAGSNDL 441 (1101)
Q Consensus 366 d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp---dg~-~las~~~d~~i~vwd~~~~~~~ 441 (1101)
.|.+.++++...+...... +.......+..+.|+- +|. .++-+..+|.|.++........
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~----------------~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss 108 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDT----------------LQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS 108 (339)
T ss_pred ccceEEEeecccccCccce----------------eeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceee
Confidence 4567788776655433111 1222345677777764 555 5666778899999987654433
Q ss_pred ccceeeecccC---cEEEEEEecCCCceEEEEecCCceEEEEE-cCCce--eEEeecCCcCeEEEecccCCCccEEEEec
Q 001319 442 RQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK--LFNFEGHEAPVYSICPHHKENIQFIFSTA 515 (1101)
Q Consensus 442 ~~~~~l~~h~~---~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~--~~~~~~h~~~v~~v~~~~~~~~~~l~s~~ 515 (1101)
..+..+..-.- ...++.|++.+. -++++-.+|.+.+-+ ..... +++++.|.-+.+-..|+.. +.+++++|+
T Consensus 109 ~~L~~ls~~ki~~~~~lslD~~~~~~--~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~-~pnlvytGg 185 (339)
T KOG0280|consen 109 VHLRGLSSKKISVVEALSLDISTSGT--KIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDK-EPNLVYTGG 185 (339)
T ss_pred eeecccchhhhhheeeeEEEeeccCc--eEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccC-CCceEEecC
Confidence 22222222222 245778999888 588888899998666 44433 4588999999999998755 347999999
Q ss_pred cCCeEEEEecCCCC-eeee-ccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCC-CCeeEEEecccCCcceEEE
Q 001319 516 IDGKIKAWLYDTMG-SRVD-YDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVV 591 (1101)
Q Consensus 516 ~d~~i~~wd~~~~~-~~~~-~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~ 591 (1101)
.|+.+..||++... ..+. ...|...|.++.-+| ++.++++|+. |-.|++||.+ -++++..-.. ++.|..+
T Consensus 186 DD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY----De~i~~~DtRnm~kPl~~~~v--~GGVWRi 259 (339)
T KOG0280|consen 186 DDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY----DECIRVLDTRNMGKPLFKAKV--GGGVWRI 259 (339)
T ss_pred CCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEecc----ccceeeeehhcccCccccCcc--ccceEEE
Confidence 99999999999444 3332 345666788888776 5778999987 8899999988 4565544332 2468889
Q ss_pred EEeCCCC-EEEEEeCCCcEEEEECCCCeee---EeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEE-EEEcccc
Q 001319 592 QFDTTQN-HFLAVGEDSQIKFWDMDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFK-ILANAIG 661 (1101)
Q Consensus 592 ~~~~~~~-~l~~~~~dg~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~-iwd~~~~ 661 (1101)
..+|.-. .++.++.-+-.+|-+++.+... .......+..-+..-.|.....+|++++ .|+.++ +|-..++
T Consensus 260 ~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 260 KHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred EecchhhhHHHHHHHhcCceEEEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccC
Confidence 8888543 3334444444566666553322 1111112222334444533345677765 366644 7755444
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.98 E-value=3.7e-07 Score=113.67 Aligned_cols=257 Identities=14% Similarity=0.120 Sum_probs=159.8
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC-
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT- 426 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~- 426 (1101)
..+++++++..++++-+..+.|++||... ..+.. + .............-..+-.....+++++++..|.++..
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~--i---g~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~ 644 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQ--I---GSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTE 644 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEE--E---ccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCC
Confidence 46889986555777778889999999764 33221 0 00000000000000112234688999999887776654
Q ss_pred CCeEEEEeecCCccccccee-------eecc-------cCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee
Q 001319 427 KHLIQLYSYAGSNDLRQHSQ-------IDAH-------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~-------l~~h-------~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~ 491 (1101)
++.|+++|..++.. ..+.. ..+. -..-+.++|+|++.. ++++.+.++.|++|| .++. +..+.
T Consensus 645 n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~-LyVad~~~~~I~v~d~~~g~-v~~~~ 721 (1057)
T PLN02919 645 NHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEK-VYIAMAGQHQIWEYNISDGV-TRVFS 721 (1057)
T ss_pred CceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCe-EEEEECCCCeEEEEECCCCe-EEEEe
Confidence 56799999877542 21100 0000 112357999995543 677888889999999 4443 33332
Q ss_pred cC---------------CcCeEEEecccCCCcc-EEEEeccCCeEEEEecCCCCeeeeccC-------------------
Q 001319 492 GH---------------EAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDA------------------- 536 (1101)
Q Consensus 492 ~h---------------~~~v~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~------------------- 536 (1101)
+. -.....|++++ ++. ++++-+.++.|++||++++.......+
T Consensus 722 G~G~~~~~~g~~~~~~~~~~P~GIavsp--dG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~ 799 (1057)
T PLN02919 722 GDGYERNLNGSSGTSTSFAQPSGISLSP--DLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGS 799 (1057)
T ss_pred cCCccccCCCCccccccccCccEEEEeC--CCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchh
Confidence 21 12345678876 445 556667789999999987653321100
Q ss_pred --CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc------------CCcceEEEEEeCCCCEEEE
Q 001319 537 --PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLA 602 (1101)
Q Consensus 537 --~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~ 602 (1101)
.......++++++|+.+++-. .++.|++||..++......... .-.....++++++|+.+++
T Consensus 800 ~~~l~~P~Gvavd~dG~LYVADs----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVa 875 (1057)
T PLN02919 800 EVLLQHPLGVLCAKDGQIYVADS----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVA 875 (1057)
T ss_pred hhhccCCceeeEeCCCcEEEEEC----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEE
Confidence 011346899999998776655 3889999999887765433211 0013566899999998888
Q ss_pred EeCCCcEEEEECCCCee
Q 001319 603 VGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 603 ~~~dg~i~iwd~~~~~~ 619 (1101)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 88999999999988765
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.90 E-value=8.5e-07 Score=87.41 Aligned_cols=238 Identities=15% Similarity=0.162 Sum_probs=144.1
Q ss_pred EEEecCCCCeEEEEcCCeEEEEECCCc--eEEEE---eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 809 CIALSKNDSYVMSATGGKISLFNMMTF--KVMTT---FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~dg~i~vwd~~~~--~~~~~---~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
.++.+.||++||+-.|..|.+-..++. .++.. .+.....=+.++||| |+.+||.+...|+|++||+....+. .
T Consensus 2 ~~~~~~~Gk~lAi~qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSp-D~tlLa~a~S~G~i~vfdl~g~~lf-~ 79 (282)
T PF15492_consen 2 HLALSSDGKLLAILQDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSP-DCTLLAYAESTGTIRVFDLMGSELF-V 79 (282)
T ss_pred ceeecCCCcEEEEEeccEEEEEeccCCchheeEEEecCCCCCchheEEEECC-CCcEEEEEcCCCeEEEEecccceeE-E
Confidence 367789999999999999888765431 12222 222344578899999 9999999999999999999864432 3
Q ss_pred ec-cC------CCCeeEEEEcCC------CCEEEEEeCCCcEEEEECCCCccc---cceEEeecCCCCCCCcceEEEcCC
Q 001319 884 LK-GH------QKRITGLAFSTS------LNILVSSGADAQLCVWSIDTWEKR---KSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 884 ~~-~h------~~~V~~l~~s~d------~~~l~s~s~Dg~v~lwd~~~~~~~---~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
+. ++ ...|..|.|.+- ...|++-..+|.++=|-+..+... ....+. ...+.+..|.++.++|.
T Consensus 80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfs-f~~~yp~Gi~~~vy~p~ 158 (282)
T PF15492_consen 80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFS-FSSHYPHGINSAVYHPK 158 (282)
T ss_pred cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEE-ecccCCCceeEEEEcCC
Confidence 22 11 345777777543 225677778888888876543221 122222 23344479999999999
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCE--EEEEeCCCc------EEEEeCCCCceeEeeC
Q 001319 948 QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL--VFATFCDGN------IGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 948 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~--l~s~~~dg~------i~vwd~~~~~~~~~~~ 1019 (1101)
.++|++++...- +++.. ... ...+++-..-.+.-+ .++..+|+. -.+|.+.+.+...+..
T Consensus 159 h~LLlVgG~~~~-----~~~~s----~a~---~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~ 226 (282)
T PF15492_consen 159 HRLLLVGGCEQN-----QDGMS----KAS---SCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQG 226 (282)
T ss_pred CCEEEEeccCCC-----CCccc----ccc---ccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeeeccc
Confidence 998888541100 00000 000 222333322222211 112222222 2344444433322211
Q ss_pred CCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC--CccccC
Q 001319 1020 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE--GKWGVS 1074 (1101)
Q Consensus 1020 ~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~--~~~~~~ 1074 (1101)
.....+..+.-|| |+.+||+...+|.|.+|++.+-. +.|+.+
T Consensus 227 ------------~~~d~i~kmSlSP-dg~~La~ih~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 227 ------------QEQDGIFKMSLSP-DGSLLACIHFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred ------------cCCCceEEEEECC-CCCEEEEEEcCCeEEEEecCcchhhcccchh
Confidence 1222445788899 79999999999999999998877 788876
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.90 E-value=4.2e-09 Score=110.39 Aligned_cols=222 Identities=15% Similarity=0.207 Sum_probs=164.7
Q ss_pred EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-------ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC
Q 001319 838 MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-------DEVKSKLKGHQKRITGLAFSTSLNILVSSGADA 910 (1101)
Q Consensus 838 ~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~-------~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg 910 (1101)
+..+.+|...|..++--. +.+-+++++.|.+|++|.++. ..+..++..|..+|.++.|-.+.++++++ ||
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 456788999998887666 667788999999999999873 24667889999999999999998888765 77
Q ss_pred cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC--CCEEEEE--eCCeEEEEEcCCceeeeEeccCC--CCCCCEE
Q 001319 911 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVV--HETQLAIYDASKMERIRQWTPQD--ALSAPIS 984 (1101)
Q Consensus 911 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~--~d~~i~v~d~~~~~~~~~~~~~~--~h~~~v~ 984 (1101)
-|.+||---+..+....-. ...+.+..+..-+. ...+.++ ...+|+++|...++....+..-. +...-++
T Consensus 805 giHlWDPFigr~Laq~~da----pk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R 880 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDA----PKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTR 880 (1034)
T ss_pred cceeecccccchhHhhhcC----cccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchhee
Confidence 8999998777655432211 11144444554443 3334443 37899999999988877776532 2256789
Q ss_pred EEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEE-Ee
Q 001319 985 CAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV-ME 1063 (1101)
Q Consensus 985 ~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~i-Wd 1063 (1101)
+++..+.|+++++|-..|+|.+.|.++|+.+..+++.. ... +.++ .| .+..|+....|.++.+ |-
T Consensus 881 ~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpme----------cdl--lqla-ap-sdq~L~~saldHslaVnWh 946 (1034)
T KOG4190|consen 881 AIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPME----------CDL--LQLA-AP-SDQALAQSALDHSLAVNWH 946 (1034)
T ss_pred EEEeccCcchhhHHhcCCcEEEEecCCCceeccCCccc----------chh--hhhc-Cc-hhHHHHhhcccceeEeeeh
Confidence 99999999999999999999999999999887666421 111 1222 34 3667888888999999 99
Q ss_pred CCCCCCccccCCCCCCC
Q 001319 1064 PSESEGKWGVSPPVDNG 1080 (1101)
Q Consensus 1064 ~~~~~~~~~~~~~~~~~ 1080 (1101)
...+...+...+|.|..
T Consensus 947 aldgimh~q~kpppepa 963 (1034)
T KOG4190|consen 947 ALDGIMHLQDKPPPEPA 963 (1034)
T ss_pred hcCCeeeeccCCCCcch
Confidence 99988777777776644
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=1.8e-06 Score=97.56 Aligned_cols=220 Identities=10% Similarity=0.044 Sum_probs=129.3
Q ss_pred CCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCe-----eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC
Q 001319 815 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPAS-----TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 889 (1101)
Q Consensus 815 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i-----~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~ 889 (1101)
++..++...+|.+..+|..+|+.+.......... .+.... + ..++.++.+|.+..+|..+|+.+........
T Consensus 160 ~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~ 236 (394)
T PRK11138 160 DGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQP 236 (394)
T ss_pred CCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEE--C-CEEEEEcCCCEEEEEEccCChhhheeccccC
Confidence 3344443347788888888888887765421111 111222 2 2466777899999999999887654421100
Q ss_pred -------CeeEEEEcC--CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 890 -------RITGLAFST--SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 890 -------~V~~l~~s~--d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
....+..+| .+..++.++.+|.+..+|..+|+.+-.... .....+.. .++..++...++.+.
T Consensus 237 ~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--------~~~~~~~~-~~~~vy~~~~~g~l~ 307 (394)
T PRK11138 237 TGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--------GSVNDFAV-DGGRIYLVDQNDRVY 307 (394)
T ss_pred CCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--------CCccCcEE-ECCEEEEEcCCCeEE
Confidence 011111122 245677778899999999999875432211 11111222 234444446689999
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
.+|..+|+.+-...... .....+..+ .+.+|+.++.||.|++.|..+|+.+.+.... ...+.. .-
T Consensus 308 ald~~tG~~~W~~~~~~--~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~----------~~~~~s-~P 372 (394)
T PRK11138 308 ALDTRGGVELWSQSDLL--HRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQKVD----------SSGFLS-EP 372 (394)
T ss_pred EEECCCCcEEEcccccC--CCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEEEcC----------CCccee-CC
Confidence 99999998755433211 111222222 2557888999999999999999988776521 111110 11
Q ss_pred EEecCCCCEEEEEECCCeEEEEeC
Q 001319 1041 AAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
.. .+..|+.++.||.|..++.
T Consensus 373 ~~---~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 373 VV---ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred EE---ECCEEEEEeCCceEEEEeC
Confidence 11 2457888899999998875
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=1e-06 Score=98.58 Aligned_cols=197 Identities=10% Similarity=-0.017 Sum_probs=124.4
Q ss_pred cEEEEEEccCCCE-EEEEEC---CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC--ceEEEEE
Q 001319 408 SVSRVAWSPDGNY-VGVAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE 481 (1101)
Q Consensus 408 ~v~~~~~spdg~~-las~~~---d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d--~~v~iwd 481 (1101)
.+....|||||+. ++..+. +..|.++|+.+++... +....+.+....|+|||+. ++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~----lt~~~g~~~~~~~SPDG~~-la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEK----IASSQGMLVVSDVSKDGSK-LLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEE----EecCCCcEEeeEECCCCCE-EEEEEccCCCcEEEEEE
Confidence 7788999999985 665443 3569999998886443 3345556777889999986 34444444 4677778
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEec-cCC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
..+.....+..+.+......|+| ||+.|+..+ ..+ .|.+.|+.+++...... .+.. ...|+|||++++....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SP--DG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~-~g~~--~~~~SPDG~~Ia~~~~ 338 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVE--DDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVF-HGKN--NSSVSTYKNYIVYSSR 338 (419)
T ss_pred CCCCcEEEcccCCCccCccEECC--CCCEEEEEECCCCCceEEEEECCCCCeEeCcc-CCCc--CceECCCCCEEEEEEc
Confidence 44444556655544333456766 566555544 333 57777777666533222 1222 2489999999988765
Q ss_pred CCC-----CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC---CcEEEEECCCC
Q 001319 559 SKD-----GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNV 617 (1101)
Q Consensus 559 ~~~-----~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~ 617 (1101)
..+ +...|.+.|+.++.......+. ......|+|||+.++....+ ..+.+.++...
T Consensus 339 ~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~---~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 339 ETNNEFGKNTFNLYLISTNSDYIRRLTANG---VNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CCCcccCCCCcEEEEEECCCCCeEECCCCC---CcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 322 1247888999888654433321 22347899999988776532 24666677543
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-08 Score=108.41 Aligned_cols=246 Identities=15% Similarity=0.288 Sum_probs=166.9
Q ss_pred cEEEEEEecCC--ceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCEEE
Q 001319 346 TVISMDFHPSH--QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNYVG 422 (1101)
Q Consensus 346 ~V~~v~fspdg--~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~la 422 (1101)
.|-.+.|||.. .+.++ ......-.||++....--. ....+.||..+|+.+.|.|. -..+|
T Consensus 69 ~vad~qws~h~a~~~wiV-sts~qkaiiwnlA~ss~~a----------------Ief~lhghsraitd~n~~~q~pdVla 131 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIV-STSNQKAIIWNLAKSSSNA----------------IEFVLHGHSRAITDINFNPQHPDVLA 131 (1081)
T ss_pred hhcceecccCCCCceeEE-ecCcchhhhhhhhcCCccc----------------eEEEEecCccceeccccCCCCCccee
Confidence 57788888763 34444 4455567789987543221 11247899999999999995 46889
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v 500 (1101)
+++.|..|..||+.+... .+.........-..++|+.... .+.+.+..+.|++|| ..+.++..+++|...|+.+
T Consensus 132 tcsvdt~vh~wd~rSp~~--p~ys~~~w~s~asqVkwnyk~p--~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~ 207 (1081)
T KOG0309|consen 132 TCSVDTYVHAWDMRSPHR--PFYSTSSWRSAASQVKWNYKDP--NVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSI 207 (1081)
T ss_pred eccccccceeeeccCCCc--ceeeeecccccCceeeecccCc--chhhhccCCceEEEeccCCCcceEEecccceeeehH
Confidence 999999999999998653 3334444555678899988766 355566678899999 5667889999999999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-CCCCceEEEEEccCCCEEEEeecCCCCCceEEE---------Ee
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE---------WN 570 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i---------wd 570 (1101)
.|..... ..+.+.+.||+|++||.+......... ....+|..-++.|-|+-...--. .|+..+.+ |+
T Consensus 208 ~fnr~~~-s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~--~G~n~v~~~~c~n~d~e~n 284 (1081)
T KOG0309|consen 208 DFNRFKY-SEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPM--VGGNMVPQLRCENSDLEWN 284 (1081)
T ss_pred HHhhhhh-hhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEeccc--cCCeeeeeccccchhhhhc
Confidence 8865433 467899999999999998765443322 23335666667675553332111 12333433 33
Q ss_pred CCC-CeeEEEecccCCcceEEEEEe--------CC--CCEEEEEeCCCcEEEEECCC
Q 001319 571 ESE-GTIKRTYAGFRKKSNGVVQFD--------TT--QNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 571 ~~~-~~~~~~~~~~~~~~v~~~~~~--------~~--~~~l~~~~~dg~i~iwd~~~ 616 (1101)
..+ .+.+++|.||.+ .|--.-|- -+ .-.|++-+.|..+++|-+.+
T Consensus 285 ~~~~~~pVh~F~GH~D-~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 285 VFDLNTPVHTFVGHDD-VVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cccCCcceeeecCcch-HHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 333 467899999987 33222221 11 23689999999999998754
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.5e-06 Score=91.02 Aligned_cols=226 Identities=14% Similarity=0.143 Sum_probs=142.7
Q ss_pred CCeEEEEECCCceEEEEeeCCCCCeeEEE--EecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCC
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPASTFLA--FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN 901 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~--~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~ 901 (1101)
+|.|..||..+|+.+....... .+.... ..+ ++..+++++.++.++.||..+|+.+..+.. .+.+.... ..++.
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~-~~~~~~~~~~~-~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~-~~~~~ 77 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGP-GIGGPVATAVP-DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAP-VVDGG 77 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSS-SCSSEEETEEE-ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGE-EEETT
T ss_pred CCEEEEEECCCCCEEEEEECCC-CCCCccceEEE-eCCEEEEEcCCCEEEEEECCCCCEEEEeec-ccccccee-eeccc
Confidence 5789999999999998886421 122222 232 345666778999999999999999877764 33322222 22355
Q ss_pred EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCC-
Q 001319 902 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL- 979 (1101)
Q Consensus 902 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h- 979 (1101)
.++.++.|+.|..+|..+|+.+-.......... ..........++..++++. ++.|..+|..+|+.+.........
T Consensus 78 ~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~ 155 (238)
T PF13360_consen 78 RVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPA--GVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRG 155 (238)
T ss_dssp EEEEEETTSEEEEEETTTSCEEEEEEE-SSCTC--STB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-S
T ss_pred ccccccceeeeEecccCCcceeeeecccccccc--ccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCC
Confidence 667777888999999999987655322211111 1112222333366666655 899999999999998887664311
Q ss_pred CCC------EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001319 980 SAP------ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1053 (1101)
Q Consensus 980 ~~~------v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~ 1053 (1101)
... +..-....++ .++.++.++.+.-+|+.+++.+-.... +. .. ..... ++..|+.+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~~----------~~--~~---~~~~~-~~~~l~~~ 218 (238)
T PF13360_consen 156 SSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKPI----------SG--IY---SLPSV-DGGTLYVT 218 (238)
T ss_dssp S--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEECS----------S---EC---ECEEC-CCTEEEEE
T ss_pred CcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEecC----------CC--cc---CCcee-eCCEEEEE
Confidence 111 2233333345 777777788644449999996532221 01 11 11234 56777777
Q ss_pred ECCCeEEEEeCCCCCCccc
Q 001319 1054 LTDGSVKVMEPSESEGKWG 1072 (1101)
Q Consensus 1054 ~~Dg~v~iWd~~~~~~~~~ 1072 (1101)
+.|+.|..||+.+++..|.
T Consensus 219 ~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 219 SSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ETTTEEEEEETTTTEEEEE
T ss_pred eCCCEEEEEECCCCCEEeE
Confidence 7999999999999998875
|
... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.3e-06 Score=86.06 Aligned_cols=189 Identities=14% Similarity=0.169 Sum_probs=119.6
Q ss_pred CCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC-------CCCCeeEEEEecCC-----CCEEEEEeCCCc
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-------PPPASTFLAFHPQD-----NNIIAIGTEDST 869 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-------~~~~i~~l~~s~~~-----~~~la~g~~dg~ 869 (1101)
....-+.++||||+.+||.+. .|+|++||+....+. .+.. -..+|..+.|.+.. ...|.+-..+|.
T Consensus 42 ~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~ 120 (282)
T PF15492_consen 42 PNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQ 120 (282)
T ss_pred CCchheEEEECCCCcEEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccce
Confidence 344567899999999999997 799999999754332 3221 12456777776521 124556667888
Q ss_pred EEEEEeecc-----eEEEee--c-cCCCCeeEEEEcCCCCEEEEEeCCCc-----------EEEEECCCCccccceEEee
Q 001319 870 IHIYNVRVD-----EVKSKL--K-GHQKRITGLAFSTSLNILVSSGADAQ-----------LCVWSIDTWEKRKSVTIHI 930 (1101)
Q Consensus 870 v~iwd~~~~-----~~~~~~--~-~h~~~V~~l~~s~d~~~l~s~s~Dg~-----------v~lwd~~~~~~~~~~~~~~ 930 (1101)
++=|-+..+ +....+ . .+...|.++.++|..++|+.||.... +.-|.+-++
T Consensus 121 L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~---------- 190 (282)
T PF15492_consen 121 LRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD---------- 190 (282)
T ss_pred eeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC----------
Confidence 887776432 222333 2 24678999999999998888774322 223333221
Q ss_pred cCCCCCCCcceEEEcCCCCEEEEEeC------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 931 PAGKTPTGDTRVQFNADQVRMLVVHE------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 931 ~~~~~~~~v~~~~~s~d~~~l~~~~d------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
+|..+.+....| .+..+|.+-+.+....... ....|..|..||||+.||+...+|.|
T Consensus 191 --------------~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~---~~d~i~kmSlSPdg~~La~ih~sG~l 253 (282)
T PF15492_consen 191 --------------SPYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQ---EQDGIFKMSLSPDGSLLACIHFSGSL 253 (282)
T ss_pred --------------CCcEEEccccCccccccccccceeeccceeeeecccc---CCCceEEEEECCCCCEEEEEEcCCeE
Confidence 122222111111 1223444443332221111 16789999999999999999999999
Q ss_pred EEEeCCCCceeEeeC
Q 001319 1005 GVFDADTLRLRCYIA 1019 (1101)
Q Consensus 1005 ~vwd~~~~~~~~~~~ 1019 (1101)
.+|++.+.++...+.
T Consensus 254 sLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 254 SLWEIPSLRLQRSWK 268 (282)
T ss_pred EEEecCcchhhcccc
Confidence 999999988877665
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.8e-07 Score=99.70 Aligned_cols=336 Identities=14% Similarity=0.118 Sum_probs=180.5
Q ss_pred cEEEEEEccCCCEEEEEE----CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 408 SVSRVAWSPDGNYVGVAF----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~----~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
.-+-..|+|...++|+++ ..|+|-||- ++|+.-+.. +..- .+++++|.|..- +|++|-.-|.+.+|. .
T Consensus 17 vsti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~V-t~P~---hatSLCWHpe~~--vLa~gwe~g~~~v~~~~ 89 (1416)
T KOG3617|consen 17 VSTISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDV-TYPV---HATSLCWHPEEF--VLAQGWEMGVSDVQKTN 89 (1416)
T ss_pred cccccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCccc-ccce---ehhhhccChHHH--HHhhccccceeEEEecC
Confidence 334467999999998876 357888874 445532211 2222 356799999876 789999999999999 4
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CC--CC--ceEEEEEccCCCEE---
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--AP--GH--WCTTMLYSADGSRL--- 553 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~--~~--~v~~~~~s~d~~~l--- 553 (1101)
+.+.-.....|..+|..+.|++ +|..++++..-|.+.+|.++..+...... .| +. ...+..+++++.-+
T Consensus 90 ~~e~htv~~th~a~i~~l~wS~--~G~~l~t~d~~g~v~lwr~d~~g~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~l 167 (1416)
T KOG3617|consen 90 TTETHTVVETHPAPIQGLDWSH--DGTVLMTLDNPGSVHLWRYDVIGEIQTSNIMQHELNDQLTLWCFRLSYDREEKFKL 167 (1416)
T ss_pred CceeeeeccCCCCCceeEEecC--CCCeEEEcCCCceeEEEEeeeccccccchhhhhHhhceeeEEEEecCCChHHhhhh
Confidence 4444444457999999999987 66899999999999999887543332211 11 11 23455556664322
Q ss_pred ---EEeecCCCCCceEE-EEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 554 ---FSCGTSKDGDSFLV-EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 554 ---~~~~~~~~~~~~i~-iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
++.+ | +..+- .++.+.....+... -.-.|+|..++.++.+|+|+-.|- .|+..........
T Consensus 168 aKaaVtg---D-e~alD~~fnwk~~~a~rs~~---------ksgv~~g~~F~~~~~~GtVyyvdq-~g~~~~V~k~dS~- 232 (1416)
T KOG3617|consen 168 AKAAVTG---D-ESALDEPFNWKESLAERSDE---------KSGVPKGTEFLFAGKSGTVYYVDQ-NGRQRTVHKLDSE- 232 (1416)
T ss_pred hhhhccC---c-hhhhcccccCccchhhcccc---------ccCCCCCcEEEEEcCCceEEEEcC-CCcEEEEEEccch-
Confidence 1221 1 11111 11111000000000 113477888999999999988874 4555444443321
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEcc-cccc---ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceec
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANA-IGLR---SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~-~~~~---~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 705 (1101)
..+-|.+.-.-+++...+-.+.++-.. .|.. +...+.+.... ..|. ++.+-+.+ +.+
T Consensus 233 ---vQmLf~~~~eai~~i~e~lr~~l~~v~~~G~~ee~~~vk~sgk~Gg------------rqGg-iA~sEssG---vLr 293 (1416)
T KOG3617|consen 233 ---VQMLFMGYCEAISIIIEFLRDCLIFVLAKGTSEERCAVKVSGKLGG------------RQGG-IACSESSG---VLR 293 (1416)
T ss_pred ---HHHHHhcccceEEEEeeeceeeEEEecCCCchHHhhhhhhccccCC------------ccCc-cccccccc---ccc
Confidence 234455544444444444333333222 2200 00000000000 0000 00000000 000
Q ss_pred cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccc
Q 001319 706 SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQH 785 (1101)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~ 785 (1101)
. ... .+......+.+++|+..+..+.++...|.+.+|.-....+. ...+...
T Consensus 294 ~----------------~eK------yg~e~ge~~~c~cY~~~~~~l~agt~~gnv~~w~~v~~~f~------g~p~~d~ 345 (1416)
T KOG3617|consen 294 K----------------SEK------YGLELGEGILCMCYGEKEIRLWAGTKEGNVTIWLDVNKGFQ------GDPTIDV 345 (1416)
T ss_pred C----------------Ccc------hhhhcCCceEEEEEeccceEEEecccCCcEEEeeecCcccc------CCCCcce
Confidence 0 000 00224567899999999999999999999999964322111 1123445
Q ss_pred cccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc
Q 001319 786 WLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 823 (1101)
Q Consensus 786 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~ 823 (1101)
|.+.+... ..+.|+.+.|.|--..++..+
T Consensus 346 w~l~~~~e---------~~g~I~~i~Wg~~k~~~avn~ 374 (1416)
T KOG3617|consen 346 WTLNGKRE---------SLGKISLIRWGPIKSTAAVNT 374 (1416)
T ss_pred EEecCchh---------hccceEEEEeccccchhhhhh
Confidence 55443221 445677777777554444433
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.83 E-value=3e-08 Score=101.36 Aligned_cols=164 Identities=18% Similarity=0.165 Sum_probs=111.5
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE-
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA- 424 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~- 424 (1101)
.++.+.++|.|+ ++|++..+....++++..... ..++++. ..... .-+++.|-.+...+..+
T Consensus 64 a~~~~~~s~~~~-llAv~~~~K~~~~f~~~~~~~----~~kl~~~---------~~v~~---~~~ai~~~~~~~sv~v~d 126 (390)
T KOG3914|consen 64 APALVLTSDSGR-LVAVATSSKQRAVFDYRENPK----GAKLLDV---------SCVPK---RPTAISFIREDTSVLVAD 126 (390)
T ss_pred cccccccCCCce-EEEEEeCCCceEEEEEecCCC----cceeeeE---------eeccc---CcceeeeeeccceEEEEe
Confidence 455666777777 667777777766777665433 1122211 01122 22334444444444444
Q ss_pred --ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe-ecCCcCeEEE
Q 001319 425 --FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHEAPVYSI 500 (1101)
Q Consensus 425 --~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-~~h~~~v~~v 500 (1101)
+....+.+|+...+.+. .+-||-..+++++|+||++ .++++..|..|+|-. ..-..+..| -||+.-|..+
T Consensus 127 kagD~~~~di~s~~~~~~~----~~lGhvSml~dVavS~D~~--~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~i 200 (390)
T KOG3914|consen 127 KAGDVYSFDILSADSGRCE----PILGHVSMLLDVAVSPDDQ--FIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTI 200 (390)
T ss_pred ecCCceeeeeecccccCcc----hhhhhhhhhheeeecCCCC--EEEEecCCceEEEEecCcccchhhhccccHhheeee
Confidence 44556667776655443 3559999999999999999 899999999999987 444444444 5799999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeecc
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 535 (1101)
+..+ +..|+++|.|++|++||+.+++....+.
T Consensus 201 sl~~---~~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 201 SLTD---NYLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred eecc---CceeeecCCCCcEEEEecccCCcccccc
Confidence 9864 3578999999999999999988775443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.82 E-value=5.5e-06 Score=84.76 Aligned_cols=211 Identities=16% Similarity=0.166 Sum_probs=148.4
Q ss_pred CEeEEEecC-CCCeEEEEc-CC-eEEEEECCCceEEEEeeCCCCCe--eEEEEecCCCCEEEEEeC-----CCcEEEEEe
Q 001319 806 AVPCIALSK-NDSYVMSAT-GG-KISLFNMMTFKVMTTFMSPPPAS--TFLAFHPQDNNIIAIGTE-----DSTIHIYNV 875 (1101)
Q Consensus 806 ~v~~~~~s~-dg~~la~~~-dg-~i~vwd~~~~~~~~~~~~~~~~i--~~l~~s~~~~~~la~g~~-----dg~v~iwd~ 875 (1101)
..-.++.+| ++..++.+. -| ...+||..+++....+....+.- -.-+||+ ||++|.+.-. .|.|-|||.
T Consensus 6 RgH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~-dG~~LytTEnd~~~g~G~IgVyd~ 84 (305)
T PF07433_consen 6 RGHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSP-DGRLLYTTENDYETGRGVIGVYDA 84 (305)
T ss_pred cccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcC-CCCEEEEeccccCCCcEEEEEEEC
Confidence 345678888 556667776 45 48999999999988876544432 2478999 8998887643 478999999
Q ss_pred e-cceEEEeeccCCCCeeEEEEcCCCCEEEEEeC------------------CCcEEEEECCCCccccceEEeecCCCCC
Q 001319 876 R-VDEVKSKLKGHQKRITGLAFSTSLNILVSSGA------------------DAQLCVWSIDTWEKRKSVTIHIPAGKTP 936 (1101)
Q Consensus 876 ~-~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~------------------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~ 936 (1101)
. +-+.+.++..|.-..-.+.+.|||+.|+.+.. +-++.+.|..+|+.+....+ ......
T Consensus 85 ~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~L--p~~~~~ 162 (305)
T PF07433_consen 85 ARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVEL--PPDLHQ 162 (305)
T ss_pred cCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeec--Cccccc
Confidence 9 66888899888777788999999988887632 23456667777776554333 222223
Q ss_pred CCcceEEEcCCCCEEEEEe-CC-----eEEEEEcCCceeeeEeccCC----CCCCCEEEEEEccCCCEEEEEe-CCCcEE
Q 001319 937 TGDTRVQFNADQVRMLVVH-ET-----QLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF-CDGNIG 1005 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~-d~-----~i~v~d~~~~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~s~~-~dg~i~ 1005 (1101)
.+++.+++.++|..++... .+ .--+.-...++.+..+.... .-...+-+|+++++|.++++.+ ..|.+.
T Consensus 163 lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~ 242 (305)
T PF07433_consen 163 LSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVA 242 (305)
T ss_pred cceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEE
Confidence 6899999999999887743 11 12233333333333333321 1257899999999999876555 778899
Q ss_pred EEeCCCCceeEeeC
Q 001319 1006 VFDADTLRLRCYIA 1019 (1101)
Q Consensus 1006 vwd~~~~~~~~~~~ 1019 (1101)
+||..+++++....
T Consensus 243 ~~d~~tg~~~~~~~ 256 (305)
T PF07433_consen 243 VWDAATGRLLGSVP 256 (305)
T ss_pred EEECCCCCEeeccc
Confidence 99999999987665
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.80 E-value=4.1e-06 Score=94.59 Aligned_cols=150 Identities=13% Similarity=0.108 Sum_probs=92.7
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCc--CeE-----EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEA--PVY-----SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~--~v~-----~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
.++.++.++.+.-+| .+|+.+.+..-... ... .+.-.+.-++..++.++.++.+..+|.++++..+......
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~ 150 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSEKGQVYALNAEDGEVAWQTKVAG 150 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcCCCEEEEEECCCCCCcccccCCC
Confidence 466677788888889 78887765542210 000 0000011123467788889999999999999988776554
Q ss_pred CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc----eEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
....+.... ++ .++.+. .++.+..+|..+|+.+-.+....... ...-.. .+..++.++.+|.+..+|.
T Consensus 151 ~~~ssP~v~-~~-~v~v~~----~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~ 222 (394)
T PRK11138 151 EALSRPVVS-DG-LVLVHT----SNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLM 222 (394)
T ss_pred ceecCCEEE-CC-EEEEEC----CCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEc
Confidence 322222222 34 444443 37889999999999887775431100 011111 1346777888999999999
Q ss_pred CCCeeeEeec
Q 001319 615 DNVNILTSTD 624 (1101)
Q Consensus 615 ~~~~~~~~~~ 624 (1101)
.+|+.+....
T Consensus 223 ~~G~~~W~~~ 232 (394)
T PRK11138 223 EQGQLIWQQR 232 (394)
T ss_pred cCChhhheec
Confidence 9988766543
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-06 Score=86.91 Aligned_cols=183 Identities=11% Similarity=0.111 Sum_probs=128.5
Q ss_pred EEEecCCCCeEEEEc------CCeEEEEECC-CceEEEEeeCCCCCeeEEEEecCCCCEEEEEe----------------
Q 001319 809 CIALSKNDSYVMSAT------GGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT---------------- 865 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~------dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~---------------- 865 (1101)
.-+||+||++|.+.- .|.|-|||.. +.+.+.++..|.-.-..+.+.| |++.|+++.
T Consensus 55 Hg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~p-DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 55 HGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMP-DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred CEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcC-CCCEEEEEcCCCccCcccCceecCh
Confidence 478999999998873 3679999998 7888999998888888999999 887777663
Q ss_pred --CCCcEEEEEeecceEEEe--e--ccCCCCeeEEEEcCCCCEEEEEeCCC-------cEEEEECCCCccccceEEeecC
Q 001319 866 --EDSTIHIYNVRVDEVKSK--L--KGHQKRITGLAFSTSLNILVSSGADA-------QLCVWSIDTWEKRKSVTIHIPA 932 (1101)
Q Consensus 866 --~dg~v~iwd~~~~~~~~~--~--~~h~~~V~~l~~s~d~~~l~s~s~Dg-------~v~lwd~~~~~~~~~~~~~~~~ 932 (1101)
.+-++...|..+|+++.+ + .-|...|..|++.++|..++..-..| .|-+++-.. ...........
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~--~~~~~~~p~~~ 211 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGG--ALRLLPAPEEQ 211 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCC--cceeccCChHH
Confidence 123455667788888776 4 34888999999999987666543332 134444333 11111110000
Q ss_pred -CCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 933 -GKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 933 -~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
......+-+|++++++..+++++ .+.+.+||..+++.+...... .+-.++-.+++ ++++.+.
T Consensus 212 ~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~-----D~cGva~~~~~-f~~ssG~ 276 (305)
T PF07433_consen 212 WRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLP-----DACGVAPTDDG-FLVSSGQ 276 (305)
T ss_pred HHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccC-----ceeeeeecCCc-eEEeCCC
Confidence 01116788999999999998865 789999999999998887654 35566666666 6666553
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.9e-07 Score=96.34 Aligned_cols=257 Identities=14% Similarity=0.125 Sum_probs=173.7
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.-|.+.|+.|.-+-.. ++.+++.||.++.|.-..-..+. +. .-+..|-+.|.+++.|-||..
T Consensus 6 ymhrd~i~hv~~tka~--fiiqASlDGh~KFWkKs~isGvE---------------fV-KhFraHL~~I~sl~~S~dg~L 67 (558)
T KOG0882|consen 6 YMHRDVITHVFPTKAK--FIIQASLDGHKKFWKKSRISGVE---------------FV-KHFRAHLGVILSLAVSYDGWL 67 (558)
T ss_pred hcccceeeeEeeehhh--eEEeeecchhhhhcCCCCcccee---------------eh-hhhHHHHHHHHhhhcccccee
Confidence 3478888888877654 56899999999999854311111 00 126678999999999999999
Q ss_pred EEEEEC-CCeEEEEeecCCcccccceeeecccCcEEEEEEecC-CCceEEEEecCCceEEEEE--cCCcee-EEeecCCc
Q 001319 421 VGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE--LSGRKL-FNFEGHEA 495 (1101)
Q Consensus 421 las~~~-d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~~~d~~v~iwd--~~~~~~-~~~~~h~~ 495 (1101)
+.+++. |..++++|+++-..+.-+ .+.--.+.+..+ .++. -..++-++.-.++.+.|+| .++... ..-.-|..
T Consensus 68 ~~Sv~d~Dhs~KvfDvEn~Dminmi-KL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~s 145 (558)
T KOG0882|consen 68 FRSVEDPDHSVKVFDVENFDMINMI-KLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFS 145 (558)
T ss_pred EeeccCcccceeEEEeeccchhhhc-ccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccC
Confidence 999877 999999999876544211 122222222221 2222 1112445556788999999 444333 33455999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCC------CCeeee---------ccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------MGSRVD---------YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~------~~~~~~---------~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+|..+.+.+.. ..+++....|.|..|..+. ....+. +........++.|+|+|..+.+.+.
T Consensus 146 PV~~i~y~qa~--Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~-- 221 (558)
T KOG0882|consen 146 PVKKIRYNQAG--DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNP-- 221 (558)
T ss_pred ceEEEEeeccc--cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCc--
Confidence 99999998754 5788888899999998763 111111 1222335789999999999998875
Q ss_pred CCCceEEEEeCCCCeeEEEecc--------------------------------cCCcceEEEEEeCCCCEEEEEeCCCc
Q 001319 561 DGDSFLVEWNESEGTIKRTYAG--------------------------------FRKKSNGVVQFDTTQNHFLAVGEDSQ 608 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~--------------------------------~~~~~v~~~~~~~~~~~l~~~~~dg~ 608 (1101)
+..|++++..+|+.++.+.. +.......++|...|++|+.++.=|
T Consensus 222 --DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g- 298 (558)
T KOG0882|consen 222 --DRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG- 298 (558)
T ss_pred --ccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-
Confidence 88999999999887765542 1111223366777788888776543
Q ss_pred EEEEECCCCeeeEeec
Q 001319 609 IKFWDMDNVNILTSTD 624 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~ 624 (1101)
|++.++.++.....+.
T Consensus 299 ikvin~~tn~v~ri~g 314 (558)
T KOG0882|consen 299 IKVINLDTNTVVRILG 314 (558)
T ss_pred EEEEEeecCeEEEEec
Confidence 6788888877776664
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.6e-08 Score=98.50 Aligned_cols=158 Identities=13% Similarity=0.084 Sum_probs=106.5
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE----EeCCeEEEEEcCC
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV----VHETQLAIYDASK 966 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~----~~d~~i~v~d~~~ 966 (1101)
+..+..+++++++|++..+....++++..... ........... ...+++.|..+.....+ |+...+.+|....
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~--~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~ 141 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVP--KRPTAISFIREDTSVLVADKAGDVYSFDILSADS 141 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecc--cCcceeeeeeccceEEEEeecCCceeeeeecccc
Confidence 44556677788888888887777777665443 11111111111 34455666665555554 3345666777665
Q ss_pred ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCC
Q 001319 967 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE 1046 (1101)
Q Consensus 967 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d 1046 (1101)
+... ..-+|-+.++.|++|||+++|+++..|..|+|-.+..-..+..+. +||.+.+.-+++. +
T Consensus 142 ~~~~----~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesfc---------lGH~eFVS~isl~----~ 204 (390)
T KOG3914|consen 142 GRCE----PILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFC---------LGHKEFVSTISLT----D 204 (390)
T ss_pred cCcc----hhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhc---------cccHhheeeeeec----c
Confidence 4332 223558999999999999999999999999998877654443332 4577766544553 5
Q ss_pred CCEEEEEECCCeEEEEeCCCCC
Q 001319 1047 PNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1047 ~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
++.|++||.|++|++||+.+|+
T Consensus 205 ~~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 205 NYLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred CceeeecCCCCcEEEEecccCC
Confidence 7789999999999999999998
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.6e-05 Score=82.37 Aligned_cols=203 Identities=17% Similarity=0.220 Sum_probs=133.7
Q ss_pred EEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee-cceEEE---
Q 001319 810 IALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKS--- 882 (1101)
Q Consensus 810 ~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~-~~~~~~--- 882 (1101)
+++|.||+++.+.. ...|.|.|+...+.+.++.... +..+--+ ..+-+.+.|.||++.-..+. .|+...
T Consensus 100 ~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG--C~~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t 175 (342)
T PF06433_consen 100 FALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG--CWLIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKST 175 (342)
T ss_dssp EEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS--EEEEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEE
T ss_pred eEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC--EEEEEec--CCCceEEEecCCceEEEEECCCCCEeEeec
Confidence 57788888877764 4679999999999998887532 2222222 33457788889999999988 454432
Q ss_pred -eeccCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecC------CCCCCCcceEEEcCCCCEEEE-
Q 001319 883 -KLKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA------GKTPTGDTRVQFNADQVRMLV- 953 (1101)
Q Consensus 883 -~~~~h~~~V-~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~- 953 (1101)
.|..-..++ ..-+++.++..++--+.+|.|+--|+............... +-.++.-..+++++....|.+
T Consensus 176 ~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvL 255 (342)
T PF06433_consen 176 KVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVL 255 (342)
T ss_dssp EESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEE
T ss_pred cccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEE
Confidence 222222333 34455566667777888999999888876544333333221 222356677999887766665
Q ss_pred ---EeC-------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEE-eCCCcEEEEeCCCCceeEeeCC
Q 001319 954 ---VHE-------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFAT-FCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 954 ---~~d-------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~-~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+.+ ..|.+||+.+++.+..+.. ..++.+|..|.|.+ +|++. ..++.+.|||..+|+++..+..
T Consensus 256 Mh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l----~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 256 MHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL----EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EEE--TT-TTS-EEEEEEEETTTTEEEEEEEE----EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred ecCCCCCCccCCceEEEEEECCCCeEEEEEeC----CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 222 2488999999999999987 56788999999887 55544 4689999999999999998874
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.75 E-value=1.6e-05 Score=83.33 Aligned_cols=220 Identities=15% Similarity=0.110 Sum_probs=140.6
Q ss_pred eEEEecC-CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 808 PCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 808 ~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.+++|.+ ++.++.+.. .+.|..|+..+++... +.... ...+++...++.++ ++.. +.+.++|..+++......
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~~ 77 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLAD 77 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEEE
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEee
Confidence 3577887 666666654 7899999998876644 22222 77778873265555 4444 446666988886543332
Q ss_pred c-----CCCCeeEEEEcCCCCEEEEEeCC--------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 886 G-----HQKRITGLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 886 ~-----h~~~V~~l~~s~d~~~l~s~s~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
. .....+.+++.++|++.++.... |.|..++.. ++...... .. .....++|+||++.|.
T Consensus 78 ~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~-~~------~~pNGi~~s~dg~~ly 149 (246)
T PF08450_consen 78 LPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD-GL------GFPNGIAFSPDGKTLY 149 (246)
T ss_dssp EETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE-EE------SSEEEEEEETTSSEEE
T ss_pred ccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec-Cc------ccccceEECCcchhee
Confidence 2 34568999999999987776544 456667766 33222111 11 4567899999999888
Q ss_pred EEe--CCeEEEEEcCCcee----eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC
Q 001319 953 VVH--ETQLAIYDASKMER----IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1026 (1101)
Q Consensus 953 ~~~--d~~i~v~d~~~~~~----~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1026 (1101)
+++ .+.|..|++..... ...+.......+....+++..+|++.++....+.|.+++.+ |+++..+...
T Consensus 150 v~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~~p----- 223 (246)
T PF08450_consen 150 VADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIELP----- 223 (246)
T ss_dssp EEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE-S-----
T ss_pred ecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEcCC-----
Confidence 754 67888888853221 12221111112348899999999988888889999999988 8888887631
Q ss_pred cccCCCCccceEEEEEecCC-CCEEEEE
Q 001319 1027 SVLNGSQTVYPLVVAAHPLE-PNQFAIG 1053 (1101)
Q Consensus 1027 ~~~~h~~~~~~~~l~~~p~d-~~~l~s~ 1053 (1101)
.-.+++++|...+ ..+++|.
T Consensus 224 -------~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 224 -------VPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp -------SSSEEEEEEESTTSSEEEEEE
T ss_pred -------CCCEEEEEEECCCCCEEEEEe
Confidence 1256899995324 4455544
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.5e-07 Score=102.88 Aligned_cols=290 Identities=12% Similarity=0.164 Sum_probs=182.0
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC--CccEEEEEEccCC-
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV--PISVSRVAWSPDG- 418 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h--~~~v~~~~~spdg- 418 (1101)
.-.+.+.++..+|.|+-+ |.++.-| +.+-|++..-... .+-.| .-.|-.+.|||..
T Consensus 22 ~v~~~~~a~si~p~grdi-~lAsr~g-l~i~dld~p~~pp-------------------r~l~h~tpw~vad~qws~h~a 80 (1081)
T KOG0309|consen 22 KVDGGFNAVSINPSGRDI-VLASRQG-LYIIDLDDPFTPP-------------------RWLHHITPWQVADVQWSPHPA 80 (1081)
T ss_pred EecCcccceeeccccchh-hhhhhcC-eEEEeccCCCCCc-------------------eeeeccCcchhcceecccCCC
Confidence 345688999999999864 6666554 4556665432111 01112 2346677888743
Q ss_pred -CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCc
Q 001319 419 -NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEA 495 (1101)
Q Consensus 419 -~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~ 495 (1101)
.+-++......-.+|++.....-..-..+.||...|+.+-|.|.... ++++++.|..+..|| .-...+..+..-..
T Consensus 81 ~~~wiVsts~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pd-Vlatcsvdt~vh~wd~rSp~~p~ys~~~w~s 159 (1081)
T KOG0309|consen 81 KPYWIVSTSNQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPD-VLATCSVDTYVHAWDMRSPHRPFYSTSSWRS 159 (1081)
T ss_pred CceeEEecCcchhhhhhhhcCCccceEEEEecCccceeccccCCCCCc-ceeeccccccceeeeccCCCcceeeeecccc
Confidence 23334444445679998755443333467899999999999998877 899999999999999 33455666655555
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEccC-CCEEEEeecCCCCCceEEEEeCCC
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
.-..|.|+.. ++. +.+.+..+.|++||.+.+.. ...+.++...|.++.|..- ...+.+++ .|++|..||.+.
T Consensus 160 ~asqVkwnyk-~p~-vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~----~d~tvkfw~y~k 233 (1081)
T KOG0309|consen 160 AASQVKWNYK-DPN-VLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSS----NDGTVKFWDYSK 233 (1081)
T ss_pred cCceeeeccc-Ccc-hhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccC----CCCceeeecccc
Confidence 6777888765 333 44556678899999987654 4566667777888877653 23445554 399999999875
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEE--EeCCCcEEEE---------ECCC-CeeeEeeccCCCCCCCCeeEEecC-
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VGEDSQIKFW---------DMDN-VNILTSTDAEGGLPNLPRLRFSKE- 640 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~~dg~i~iw---------d~~~-~~~~~~~~~~~~~~~v~~v~~s~~- 640 (1101)
....-......+..+..-++.|-|.-.++ --.+..+.++ +..+ .+.++++.+|.. .|....|-..
T Consensus 234 St~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D--~V~eFlWR~r~ 311 (1081)
T KOG0309|consen 234 STTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDD--VVLEFLWRKRK 311 (1081)
T ss_pred cccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcch--HHHHHhhhhcc
Confidence 43332222223335555566665443332 1112233333 3322 345666665543 4544444321
Q ss_pred ---------CCEEEEEEcCCcEEEEEcccc
Q 001319 641 ---------GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 641 ---------g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.-.|++=+.|.++++|-+.+.
T Consensus 312 e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 312 ECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred cccCCCCccceeEEEeecCCceEeeeccHH
Confidence 237899999999999988654
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=6e-07 Score=99.58 Aligned_cols=107 Identities=14% Similarity=0.384 Sum_probs=82.5
Q ss_pred EEEEEecCCceEEEEEe----ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 348 ISMDFHPSHQTLLLVGS----SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~----~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
+-..|+|... ++|+++ ..|.|.||- ++|+...... . .-.+++++|+|..-.||.
T Consensus 19 ti~SWHPseP-lfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-----------------~---P~hatSLCWHpe~~vLa~ 76 (1416)
T KOG3617|consen 19 TISSWHPSEP-LFAVASFSPERGGSVTIFA-DTGEPQRDVT-----------------Y---PVHATSLCWHPEEFVLAQ 76 (1416)
T ss_pred cccccCCCCc-eeEEEEecCCCCceEEEEe-cCCCCCcccc-----------------c---ceehhhhccChHHHHHhh
Confidence 3456888877 667764 357888884 6676433211 1 124567999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
|-.-|.+.+|...+.+.-. ....|..+|..+.||++|. .++|+..-|.|.+|.
T Consensus 77 gwe~g~~~v~~~~~~e~ht---v~~th~a~i~~l~wS~~G~--~l~t~d~~g~v~lwr 129 (1416)
T KOG3617|consen 77 GWEMGVSDVQKTNTTETHT---VVETHPAPIQGLDWSHDGT--VLMTLDNPGSVHLWR 129 (1416)
T ss_pred ccccceeEEEecCCceeee---eccCCCCCceeEEecCCCC--eEEEcCCCceeEEEE
Confidence 9999999999988755332 3457999999999999999 899999999999999
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.67 E-value=5.6e-07 Score=88.32 Aligned_cols=247 Identities=15% Similarity=0.228 Sum_probs=161.2
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc--ccccceeeeccc------------CcEEEEEEecCCCceEEEE
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHV------------GAVNDLAFAYPNKLLCVVT 470 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~l~~h~------------~~V~~l~~s~d~~~~~l~s 470 (1101)
....|+++.|...|.|||+|...|.|.+|.-+... ..+-+.++++|. ..|..+.|..++.+..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 45689999999999999999999999999876433 122222455664 3588899988876556777
Q ss_pred ecCCceEEEEE-cCC-------------------cee-----------------------EEe-ecCCcCeEEEecccCC
Q 001319 471 CGDDKLIKVWE-LSG-------------------RKL-----------------------FNF-EGHEAPVYSICPHHKE 506 (1101)
Q Consensus 471 ~~~d~~v~iwd-~~~-------------------~~~-----------------------~~~-~~h~~~v~~v~~~~~~ 506 (1101)
.+.|++|++|. ... .++ +.. ..|.-.|.++.+..
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~Ns-- 182 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNS-- 182 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecC--
Confidence 77899999998 221 000 001 23555677777754
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeee---ccCCCC-----ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE-
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGH-----WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK- 577 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~-----~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~- 577 (1101)
|...+++ +.|=.|.+|+++.....+. +..+.. -|++..|+|....++.-+. ..|.|++-|++...+-
T Consensus 183 D~et~lS-aDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSs---SkG~Ikl~DlRq~alcd 258 (460)
T COG5170 183 DKETLLS-ADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSS---SKGEIKLNDLRQSALCD 258 (460)
T ss_pred chheeee-ccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEec---CCCcEEehhhhhhhhcc
Confidence 4456655 4578899999876554432 222322 4788899996554443332 2788999998732210
Q ss_pred ---E----E--------ecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC-CeeeEeeccCCC----------CCC
Q 001319 578 ---R----T--------YAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGG----------LPN 631 (1101)
Q Consensus 578 ---~----~--------~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~----------~~~ 631 (1101)
. . +.+.. ..+..+.|+++|+++++-.. -+|.+||.+. ..++.+++.+.. ...
T Consensus 259 n~~klfe~~~D~v~~~ff~eiv-sSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDa 336 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIV-SSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDA 336 (460)
T ss_pred CchhhhhhccCcccchhHHHHh-hhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccc
Confidence 0 1 11111 24666899999988887654 4899999875 345565543321 011
Q ss_pred C---CeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 632 L---PRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 632 v---~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
| ..+.||.|.+.+.+|+..+...+|-..
T Consensus 337 ifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 337 IFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeeEEEEecCCcccccccccccceeeeccc
Confidence 2 357788899999999998888887643
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.64 E-value=5e-05 Score=79.59 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=143.5
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc-cCCCEEEEEEC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS-PDGNYVGVAFT 426 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s-pdg~~las~~~ 426 (1101)
.+++|.+....|+.+.-..+.|..|+..++.... +... ....+++. ++|++ +++..
T Consensus 3 Egp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~--------------------~~~~--~~~G~~~~~~~g~l-~v~~~ 59 (246)
T PF08450_consen 3 EGPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV--------------------IDLP--GPNGMAFDRPDGRL-YVADS 59 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEETTTTEEEE--------------------EESS--SEEEEEEECTTSEE-EEEET
T ss_pred cceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE--------------------EecC--CCceEEEEccCCEE-EEEEc
Confidence 3678898444477787778999999998876432 1111 27777787 66554 44555
Q ss_pred CCeEEEEeecCCcccccceeee--c-ccCcEEEEEEecCCCceEEEEecCC--------ceEEEEEcCCceeEEeecCCc
Q 001319 427 KHLIQLYSYAGSNDLRQHSQID--A-HVGAVNDLAFAYPNKLLCVVTCGDD--------KLIKVWELSGRKLFNFEGHEA 495 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~l~--~-h~~~V~~l~~s~d~~~~~l~s~~~d--------~~v~iwd~~~~~~~~~~~h~~ 495 (1101)
++ +.++|..+++... +.... . .....+.+++.++|+ +.++.... +.|..++..++... +...-.
T Consensus 60 ~~-~~~~d~~~g~~~~-~~~~~~~~~~~~~~ND~~vd~~G~--ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~-~~~~~~ 134 (246)
T PF08450_consen 60 GG-IAVVDPDTGKVTV-LADLPDGGVPFNRPNDVAVDPDGN--LYVTDSGGGGASGIDPGSVYRIDPDGKVTV-VADGLG 134 (246)
T ss_dssp TC-EEEEETTTTEEEE-EEEEETTCSCTEEEEEEEE-TTS---EEEEEECCBCTTCGGSEEEEEEETTSEEEE-EEEEES
T ss_pred Cc-eEEEecCCCcEEE-EeeccCCCcccCCCceEEEcCCCC--EEEEecCCCccccccccceEEECCCCeEEE-EecCcc
Confidence 55 5666998875433 22331 2 345789999999999 56654433 55777775555433 333355
Q ss_pred CeEEEecccCCCccEE-EEeccCCeEEEEecCCCCe-----ee--eccCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 496 PVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGS-----RV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~-----~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
..+.|+|++ +++.| ++-+..+.|..++++.... .. .+.........+++..+|+..++... .+.|.
T Consensus 135 ~pNGi~~s~--dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~----~~~I~ 208 (246)
T PF08450_consen 135 FPNGIAFSP--DGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG----GGRIV 208 (246)
T ss_dssp SEEEEEEET--TSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET----TTEEE
T ss_pred cccceEECC--cchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC----CCEEE
Confidence 678999987 55555 5677888999999865433 11 22222234789999999987777553 78899
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEe-CCCCEEEEEe
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1101)
++|.+ |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 209 ~~~p~-G~~~~~i~~p~~-~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 209 VFDPD-GKLLREIELPVP-RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp EEETT-SCEEEEEE-SSS-SEEEEEEESTTSSEEEEEE
T ss_pred EECCC-ccEEEEEcCCCC-CEEEEEEECCCCCEEEEEe
Confidence 99988 888888877644 78889994 6667766654
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.6e-06 Score=79.51 Aligned_cols=193 Identities=7% Similarity=-0.034 Sum_probs=128.4
Q ss_pred EEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-eE-EE-eeccCCCCeeEEE
Q 001319 819 VMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EV-KS-KLKGHQKRITGLA 895 (1101)
Q Consensus 819 la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-~~-~~-~~~~h~~~V~~l~ 895 (1101)
+++..|.++++++++-+..........-.+.++++++ +++++++.+....|..|.+... +. +. .....++.-.+..
T Consensus 132 ~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~sn-d~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S 210 (344)
T KOG4532|consen 132 NIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSN-DPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS 210 (344)
T ss_pred eeccCCcceeEEEEecCcccceeeccccceeeeEEcC-CCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence 3333366666666654333222222222378899999 9999999999999999999854 22 22 2344556678899
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE--EEEE-eCCeEEEEEcCCceeeeE
Q 001319 896 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR--MLVV-HETQLAIYDASKMERIRQ 972 (1101)
Q Consensus 896 ~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~--l~~~-~d~~i~v~d~~~~~~~~~ 972 (1101)
|+.....+|++..||++.|||+..-...... ......++.+.++.+.|++.|.. |..+ +-+.+.|.|+.++.....
T Consensus 211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~-~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~ 289 (344)
T KOG4532|consen 211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAE-ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQV 289 (344)
T ss_pred eccCcceEEEEecCCcEEEEEecccccchhh-hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeE
Confidence 9999999999999999999999874432222 22223334489999999986653 3333 467899999999876655
Q ss_pred eccCC----CC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 973 WTPQD----AL-SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 973 ~~~~~----~h-~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
+.... .| ...|..-.|+.++.-+.+.+++ .+.-|++.+...
T Consensus 290 I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 290 IVIPDDVERKHNTQHIFGTNFNNENESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred EecCccccccccccccccccccCCCcccccccch-hhheeeccccce
Confidence 54432 11 2347777888888777766654 355666665443
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.0035 Score=72.64 Aligned_cols=587 Identities=12% Similarity=0.074 Sum_probs=286.0
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC--
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-- 417 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-- 417 (1101)
.++..+-..|+.+-++| ++.+||.-|.=.+-.+.+...... ...+ +. ++ ..-++|..++.-.+
T Consensus 302 ~lge~siassi~~L~ng--~lFvGS~~gdSqLi~L~~e~d~gs-y~~i---------le--t~-~NLgPI~Dm~Vvd~d~ 366 (1096)
T KOG1897|consen 302 YLGETSIASSINYLDNG--VLFVGSRFGDSQLIKLNTEPDVGS-YVVI---------LE--TF-VNLGPIVDMCVVDLDR 366 (1096)
T ss_pred ecCCcchhhhhhcccCc--eEEEeccCCceeeEEccccCCCCc-hhhh---------hh--hc-ccccceeeEEEEeccc
Confidence 34555667777788888 457888877666666655433210 0000 00 01 13347777776543
Q ss_pred --CCEEEEEE---CCCeEEEEeecCCcccccceeeecccCcEEEEE--EecCCCceEEEEecCCceEEEEEcCCcee-EE
Q 001319 418 --GNYVGVAF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVTCGDDKLIKVWELSGRKL-FN 489 (1101)
Q Consensus 418 --g~~las~~---~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~--~s~d~~~~~l~s~~~d~~v~iwd~~~~~~-~~ 489 (1101)
+..+++|+ .||++++..-.-+-...-...+.| -..++.+. +.+.-.. +++.+-.+. -++...+++.. ..
T Consensus 367 q~q~qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G-ikg~w~lk~~v~~~~d~-ylvlsf~~e-Trvl~i~~e~ee~~ 443 (1096)
T KOG1897|consen 367 QGQGQIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG-IKGMWSLKSMVDENYDN-YLVLSFISE-TRVLNISEEVEETE 443 (1096)
T ss_pred cCCceEEEEeCCCCCCcEEEEecccccceeeEeecCC-ccceeEeeccccccCCc-EEEEEeccc-eEEEEEccceEEec
Confidence 24566654 488999876443221111113445 44577777 5443333 333333222 23444334321 11
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEE
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
..+-......+..+.- +++.|+-.. ...||+++-. .....+..+.. ++....+.+...++.++. ++.+...
T Consensus 444 ~~gf~~~~~Tif~S~i-~g~~lvQvT-s~~iRl~ss~--~~~~~W~~p~~-~ti~~~~~n~sqVvvA~~----~~~l~y~ 514 (1096)
T KOG1897|consen 444 DPGFSTDEQTIFCSTI-NGNQLVQVT-SNSIRLVSSA--GLRSEWRPPGK-ITIGVVSANASQVVVAGG----GLALFYL 514 (1096)
T ss_pred cccccccCceEEEEcc-CCceEEEEe-cccEEEEcch--hhhhcccCCCc-eEEEEEeecceEEEEecC----ccEEEEE
Confidence 2222222333332222 122222222 2356666533 22233333333 333334444445555542 5667667
Q ss_pred eCCCCeeEEEecccCCcceEEEEEeCCC------CEEEEEeCCCcEE-EEECCCCeeeEeeccC--CCCCCCCeeEEecC
Q 001319 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQ------NHFLAVGEDSQIK-FWDMDNVNILTSTDAE--GGLPNLPRLRFSKE 640 (1101)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~~~dg~i~-iwd~~~~~~~~~~~~~--~~~~~v~~v~~s~~ 640 (1101)
++..+.+...........+.|+.++|-| +.++.|..+..+. +.-..+...+...... .-...|.-..+-.|
T Consensus 515 ~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d 594 (1096)
T KOG1897|consen 515 EIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGD 594 (1096)
T ss_pred EeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeecc
Confidence 7766664333333333468888888742 2566666444433 3333444433332221 11223444555556
Q ss_pred CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEE
Q 001319 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIV 720 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (1101)
..+|.++..||.+.-+.+....-.....+. ......|+.--.|+..++..+...+.... .++ .
T Consensus 595 ~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk--~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~-------------viY--~ 657 (1096)
T KOG1897|consen 595 IHYLLVALGDGALLYFVLDINTGQLSDRKK--VTLGTQPISLRTFSSKSRTAVFALSDRPT-------------VIY--S 657 (1096)
T ss_pred ceEEEEEcCCceEEEEEEEcccceEccccc--cccCCCCcEEEEEeeCCceEEEEeCCCCE-------------EEE--e
Confidence 889999999999887765544222211111 11112333333444443333222221110 000 0
Q ss_pred eCCCeEEEEcCCCCCCcccEEE-EEee-cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 721 DSGQCRLVTMPESTDTSSKVVR-LLYT-NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~i~~-~~~s-~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
..++.....+ .-..+.. ..|+ +...-.++....+.+++..++.-.. ..+.+ +
T Consensus 658 ~n~kLv~spl-----s~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqk--------------l~irt-------v 711 (1096)
T KOG1897|consen 658 SNGKLVYSPL-----SLKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQK--------------LHIRT-------V 711 (1096)
T ss_pred cCCcEEEecc-----chHHhhhhcccccccCCceEEEecCCceEEEEecchhh--------------cceee-------e
Confidence 0000000000 0000000 0111 1112233334445566554432110 00000 1
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc------------C---CeEEEEECCCceEEEEeeCCC-C---CeeEEEEecCCCC
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT------------G---GKISLFNMMTFKVMTTFMSPP-P---ASTFLAFHPQDNN 859 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~------------d---g~i~vwd~~~~~~~~~~~~~~-~---~i~~l~~s~~~~~ 859 (1101)
........+++.+....+++.+ . ..++++|-.+.+.....+-.. . .|.++.|..+.+.
T Consensus 712 ---pl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t 788 (1096)
T KOG1897|consen 712 ---PLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNT 788 (1096)
T ss_pred ---cCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCce
Confidence 1233445556655333333321 1 127788888777665443211 2 2455568874378
Q ss_pred EEEEEe----------CCCcEEEEEeecceEEEeeccC--CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE
Q 001319 860 IIAIGT----------EDSTIHIYNVRVDEVKSKLKGH--QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 860 ~la~g~----------~dg~v~iwd~~~~~~~~~~~~h--~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 927 (1101)
++++|+ ..|.|.||.+..++.+.....+ .+.+.++..- +|++||. -...|++|+..+++.+...
T Consensus 789 ~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e- 864 (1096)
T KOG1897|consen 789 YYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIE- 864 (1096)
T ss_pred EEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhh-
Confidence 888886 3588999998885444443222 3455555433 4666654 4567999999886433322
Q ss_pred EeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEE--EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLA--IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~--v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
..+. ..+..+...-.|..+++++ -+.+. .|+-..|..+..- .+.+....+++.+-.+..++ .+..+|.+
T Consensus 865 ----~~~~-~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evA--rD~~p~Wmtaveil~~d~yl-gae~~gNl 936 (1096)
T KOG1897|consen 865 ----CNIS-NPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVA--RDYNPNWMTAVEILDDDTYL-GAENSGNL 936 (1096)
T ss_pred ----hccc-CCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEee--hhhCccceeeEEEecCceEE-eecccccE
Confidence 2222 6788888899999999987 45544 4444444444332 34458889999988666554 45567888
Q ss_pred EEEeCCC
Q 001319 1005 GVFDADT 1011 (1101)
Q Consensus 1005 ~vwd~~~ 1011 (1101)
.+-..++
T Consensus 937 f~v~~d~ 943 (1096)
T KOG1897|consen 937 FTVRKDS 943 (1096)
T ss_pred EEEEecC
Confidence 7765553
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.5e-05 Score=77.19 Aligned_cols=201 Identities=16% Similarity=0.111 Sum_probs=135.7
Q ss_pred CeEEEEc-CCeEEEEECCCceEE-EEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEE
Q 001319 817 SYVMSAT-GGKISLFNMMTFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGL 894 (1101)
Q Consensus 817 ~~la~~~-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l 894 (1101)
.+||.|+ .|...+|...+.+.. .....|...|+-+.=--+...-+..++.|.++++.++.-+.....+....-.+.++
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~ 164 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSL 164 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccceeeccccceeee
Confidence 4666665 799999998865543 33333444333221111022345677889999999887654433332122238899
Q ss_pred EEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeeeEe
Q 001319 895 AFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 895 ~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~ 973 (1101)
++++|++++++.++...|.+|.+......... .........-....|+.....+|++ .||++.|||+.........
T Consensus 165 ~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~---~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~ 241 (344)
T KOG4532|consen 165 HYSNDPSWGSSVGDSRRVFRYAIDDESEYIEN---IYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAE 241 (344)
T ss_pred EEcCCCceEEEecCCCcceEEEeCCccceeee---eEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhh
Confidence 99999999999999999999999874432222 1222222556678899988888885 5999999999876554332
Q ss_pred cc--CCCCCCCEEEEEEccCCC--EEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 974 TP--QDALSAPISCAVYSCNSQ--LVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 974 ~~--~~~h~~~v~~v~~s~dg~--~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.. ...|.+.++.+.||+-|- +|+..-.-+.+.|-|++++.....+..
T Consensus 242 ~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i 292 (344)
T KOG4532|consen 242 ISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVI 292 (344)
T ss_pred hcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEec
Confidence 21 123699999999998775 455666678899999999987777664
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.59 E-value=1.6e-06 Score=85.16 Aligned_cols=117 Identities=15% Similarity=0.263 Sum_probs=86.1
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCCc--e-EEEEeeCCC-----CCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTF--K-VMTTFMSPP-----PASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~--~-~~~~~~~~~-----~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
|...+.++.|..|.+.++++++=+|.+|+++-- . .+..++.|. .-|++..|+|.....+...+..|.|++-|
T Consensus 171 H~yhiNSiS~NsD~et~lSaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~D 250 (460)
T COG5170 171 HPYHINSISFNSDKETLLSADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLND 250 (460)
T ss_pred ceeEeeeeeecCchheeeeccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehh
Confidence 888899999999999999999999999988632 1 233344443 34889999997778888899999999999
Q ss_pred eecceE------EE----------eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 875 VRVDEV------KS----------KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 875 ~~~~~~------~~----------~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
+....+ +. -+.+-...|..+.|+++|+++++-+. -+|++||+...
T Consensus 251 lRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~ 311 (460)
T COG5170 251 LRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMA 311 (460)
T ss_pred hhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccc
Confidence 974311 11 11223356788888888888877654 46888888763
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.59 E-value=0.00028 Score=68.35 Aligned_cols=137 Identities=9% Similarity=-0.053 Sum_probs=91.8
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcce
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN 588 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v 588 (1101)
.+++.|+..+.+..-|..++...++...... +.+-+.- -|.+++.|.. .+.+++.+..+|.....+..... .-
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~R-iE~sa~v-vgdfVV~GCy----~g~lYfl~~~tGs~~w~f~~~~~-vk 96 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVR-IECSAIV-VGDFVVLGCY----SGGLYFLCVKTGSQIWNFVILET-VK 96 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCce-eeeeeEE-ECCEEEEEEc----cCcEEEEEecchhheeeeeehhh-hc
Confidence 5677777777777777777776665443322 3222221 5677888886 78899999999988777765543 22
Q ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 589 GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 589 ~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
......+++..+.+|+.|+..+..|..+...+...+..+.. ..+-+..|-...|..+...|.+.
T Consensus 97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~--f~sP~i~~g~~sly~a~t~G~vl 160 (354)
T KOG4649|consen 97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGT--FVSPVIAPGDGSLYAAITAGAVL 160 (354)
T ss_pred cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCce--eccceecCCCceEEEEeccceEE
Confidence 23556788999999999999999999999998887665542 23334455333444444445443
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.7e-06 Score=80.92 Aligned_cols=95 Identities=22% Similarity=0.339 Sum_probs=72.6
Q ss_pred CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCCCCeeEEEEcCC-CCE
Q 001319 825 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTS-LNI 902 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d-~~~ 902 (1101)
+..+.|+++..+....-......|++++-+|....++++|+.||.+-+||...... ...+..|..+|..+-|+|. +..
T Consensus 159 d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~ 238 (319)
T KOG4714|consen 159 DNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEH 238 (319)
T ss_pred cceeeecccccccccccccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchh
Confidence 34555665443332222222344999999997778899999999999999987744 3456899999999999985 568
Q ss_pred EEEEeCCCcEEEEECCC
Q 001319 903 LVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 903 l~s~s~Dg~v~lwd~~~ 919 (1101)
|++++.||.+.-||-.+
T Consensus 239 Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 239 LFTCSEDGSLWHWDAST 255 (319)
T ss_pred eeEecCCCcEEEEcCCC
Confidence 99999999999999876
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=9e-06 Score=83.35 Aligned_cols=248 Identities=13% Similarity=0.132 Sum_probs=147.8
Q ss_pred ccccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 401 IFKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
++.+|...|..++|||..+ ++..++.+..|+|.|+++...+. .+..| ..+++++|.-|..+ ++..|-..|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vs---sy~a~-~~~wSC~wDlde~h-~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVS---SYIAY-NQIWSCCWDLDERH-VIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeee---heecc-CCceeeeeccCCcc-eeEEeccCceEEE
Confidence 5788999999999999877 78889999999999999976665 45566 78999999999876 8999999999999
Q ss_pred EE--cCCceeEEeec--CCcCeEEEecccC----CCccEEEEeccCCeEEEEecCCCCeee--eccC-CCCceEEEEEcc
Q 001319 480 WE--LSGRKLFNFEG--HEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDA-PGHWCTTMLYSA 548 (1101)
Q Consensus 480 wd--~~~~~~~~~~~--h~~~v~~v~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~-~~~~v~~~~~s~ 548 (1101)
|| .+...+..+.+ ...+|..++..+. +.|.+++..+.+ +..|++.-..... .... ..+...++.+.+
T Consensus 263 yD~R~~~~~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~pG~cismqy~~ 340 (463)
T KOG1645|consen 263 YDMRQPEGPLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEPPGICISMQYHG 340 (463)
T ss_pred EEccCCCchHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCCCcceeeeeecC
Confidence 99 33334444433 2334544443211 122344444332 4456654332222 1222 234556666666
Q ss_pred CCCEEEEeecCCCCCceEE----EEeCCCCeeEEEec-ccCCc---c---eEEEEEeCCCCEEEE-EeCCCcEEEEECCC
Q 001319 549 DGSRLFSCGTSKDGDSFLV----EWNESEGTIKRTYA-GFRKK---S---NGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~----iwd~~~~~~~~~~~-~~~~~---~---v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1101)
-.+.++........-..++ --|-.+|..+..-+ ++.+. . -..+.-.++.++++. +++.+.+.+||..+
T Consensus 341 ~snh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s 420 (463)
T KOG1645|consen 341 VSNHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHS 420 (463)
T ss_pred ccceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccch
Confidence 5566665544211111111 12223333322111 11010 0 111222345566665 55778899999999
Q ss_pred CeeeEeeccCCCCCCCCeeEEec-CC-CEEEEEEcCCcEEEEEcc
Q 001319 617 VNILTSTDAEGGLPNLPRLRFSK-EG-NLLAVTTADNGFKILANA 659 (1101)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~-~g-~~l~~~~~d~~i~iwd~~ 659 (1101)
++.++++.... +|.++.... +| .+|++-+ |..++||..+
T Consensus 421 ~evvQ~l~~~e---pv~Dicp~~~n~~syLa~LT-d~~v~Iyk~e 461 (463)
T KOG1645|consen 421 FEVVQTLALSE---PVLDICPNDTNGSSYLALLT-DDRVHIYKNE 461 (463)
T ss_pred hheeeecccCc---ceeecceeecCCcchhhhee-cceEEEEecC
Confidence 99999988753 566665543 33 3555444 5678887654
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.55 E-value=0.00037 Score=82.18 Aligned_cols=242 Identities=11% Similarity=0.080 Sum_probs=143.5
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
.+.|.++.|-.++..++.+..+|.|.+-|.++.... ....-...|.+++|+||++ +++-.+.++++.+-+.+-.
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e----ivg~vd~GI~aaswS~Dee--~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE----IVGNVDNGISAASWSPDEE--LLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee----eeeeccCceEEEeecCCCc--EEEEEeCCcEEEEEecccc
Confidence 468999999999999999999999999998886432 2334567899999999999 5665555667765443222
Q ss_pred eeEEeec-----CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 486 KLFNFEG-----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 486 ~~~~~~~-----h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
++..-.- ..+....+-|-... .-+.|+. |....-+................-++++|--||+++++.....
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrke---Tqfrgs~-gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKE---TQFRGSE-GRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred chhccccccccccccccceecccccc---eeeecch-hhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 2211110 11122223332211 1111111 1111111100000000001122345799999999999854432
Q ss_pred C-CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe---CCCcEEEEECCC---CeeeEeeccCCCCCCCC
Q 001319 561 D-GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDN---VNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 561 ~-~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~---~~~~~~~~~~~~~~~v~ 633 (1101)
. +...|++||.+ |.+..+-... ...-.+++|-|.|..+++.. .|+.|.+|..+. |+.....+ .....|.
T Consensus 218 ~~~~RkirV~drE-g~Lns~se~~-~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f~l~~p--~de~~ve 293 (1265)
T KOG1920|consen 218 ETGTRKIRVYDRE-GALNSTSEPV-EGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEFVLPFP--LDEKEVE 293 (1265)
T ss_pred cCCceeEEEeccc-chhhcccCcc-cccccceeecCCCCeEeeeeecCCCCcEEEEecCCccccccccCCc--ccccchh
Confidence 2 23789999987 4433322222 22456699999999888853 566899998653 22222222 2233489
Q ss_pred eeEEecCCCEEEE---EEcCCcEEEEEcccc
Q 001319 634 RLRFSKEGNLLAV---TTADNGFKILANAIG 661 (1101)
Q Consensus 634 ~v~~s~~g~~l~~---~~~d~~i~iwd~~~~ 661 (1101)
.++|+.++..|++ ......|++|-+.+-
T Consensus 294 ~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 294 ELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred eeeecCCCCceeeeecccccceEEEEEecCe
Confidence 9999999999998 444455999987654
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=2e-05 Score=82.45 Aligned_cols=219 Identities=15% Similarity=0.110 Sum_probs=138.6
Q ss_pred CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccC
Q 001319 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHK 505 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~ 505 (1101)
+|+|..||..+|+.+-... +..-.....+. ..+++. .+++++.++.+..|| .+|+.+.++.. .+.+.....
T Consensus 2 ~g~l~~~d~~tG~~~W~~~-~~~~~~~~~~~-~~~~~~--~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~--- 73 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYD-LGPGIGGPVAT-AVPDGG--RVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPV--- 73 (238)
T ss_dssp TSEEEEEETTTTEEEEEEE-CSSSCSSEEET-EEEETT--EEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEE---
T ss_pred CCEEEEEECCCCCEEEEEE-CCCCCCCccce-EEEeCC--EEEEEcCCCEEEEEECCCCCEEEEeec-cccccceee---
Confidence 6889999999888765331 21111222222 233455 466778899999999 79998877764 222211111
Q ss_pred CCccEEEEeccCCeEEEEecCCCCeeeec-cCCC---CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPG---HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 506 ~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~---~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
.++..++.++.++.++.+|..+++..... .... .....+....++..++.+.. ++.|..+|.++|+.+..+.
T Consensus 74 ~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 74 VDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTS----SGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEET----CSEEEEEETTTTEEEEEEE
T ss_pred ecccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEec----cCcEEEEecCCCcEEEEee
Confidence 12346677778889999999999998873 3221 11223333334777777764 7889999999999988887
Q ss_pred ccCCcc---------eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 582 GFRKKS---------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 582 ~~~~~~---------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
...... ...-....++ .++.++.++.+..+|..+++.+.... ... +.. ....++..|++++.++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~~w~~~-~~~---~~~-~~~~~~~~l~~~~~~~~ 223 (238)
T PF13360_consen 150 VGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDLATGEKLWSKP-ISG---IYS-LPSVDGGTLYVTSSDGR 223 (238)
T ss_dssp SSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEETTTTEEEEEEC-SS----ECE-CEECCCTEEEEEETTTE
T ss_pred cCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEECCCCCEEEEec-CCC---ccC-CceeeCCEEEEEeCCCE
Confidence 643211 1111222234 78888888864444999999765433 211 222 24567888888889999
Q ss_pred EEEEEcccccc
Q 001319 653 FKILANAIGLR 663 (1101)
Q Consensus 653 i~iwd~~~~~~ 663 (1101)
+..||..++..
T Consensus 224 l~~~d~~tG~~ 234 (238)
T PF13360_consen 224 LYALDLKTGKV 234 (238)
T ss_dssp EEEEETTTTEE
T ss_pred EEEEECCCCCE
Confidence 99999998843
|
... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.7e-05 Score=79.72 Aligned_cols=288 Identities=10% Similarity=0.094 Sum_probs=158.2
Q ss_pred CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec------CCCCCceEEEEeCCCCeeEEEecccCC------
Q 001319 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEGTIKRTYAGFRK------ 585 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~~~~~~~~~~~~------ 585 (1101)
+++.++|.++++.+-.+.. +..-.+.++||++.+++... .++..-.|.+||..+-.....+.-..+
T Consensus 17 ~rv~viD~d~~k~lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~ 94 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV 94 (342)
T ss_dssp EEEEEEETTTTEEEEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred ceEEEEECCCCcEEEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence 4677888777665443332 22345778999999887653 122345699999999887775543322
Q ss_pred cceEEEEEeCCCCEEEEE--eCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccc
Q 001319 586 KSNGVVQFDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~--~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
......+++.|++++++. +--..|.|.|+..++.+..+...+ +..+--+. .+.+.+.+.||.+.-..+....+
T Consensus 95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PG----C~~iyP~~-~~~F~~lC~DGsl~~v~Ld~~Gk 169 (342)
T PF06433_consen 95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPG----CWLIYPSG-NRGFSMLCGDGSLLTVTLDADGK 169 (342)
T ss_dssp --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTS----EEEEEEEE-TTEEEEEETTSCEEEEEETSTSS
T ss_pred ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCC----EEEEEecC-CCceEEEecCCceEEEEECCCCC
Confidence 112337889999998884 456689999999999998887653 12222222 24677888999998888874422
Q ss_pred ccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEE
Q 001319 664 SLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRL 743 (1101)
Q Consensus 664 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 743 (1101)
..+... -.|.++...+ +..-
T Consensus 170 ~~~~~t-------------~~F~~~~dp~-----------------------------------------------f~~~ 189 (342)
T PF06433_consen 170 EAQKST-------------KVFDPDDDPL-----------------------------------------------FEHP 189 (342)
T ss_dssp EEEEEE-------------EESSTTTS-B------------------------------------------------S--
T ss_pred EeEeec-------------cccCCCCccc-----------------------------------------------cccc
Confidence 221110 1222222111 1112
Q ss_pred EeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-
Q 001319 744 LYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA- 822 (1101)
Q Consensus 744 ~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~- 822 (1101)
++...+..++..+-+|.|.--++....... ..-|...+........ ..+.-.-+++++....|.+-
T Consensus 190 ~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~---------~~~~~~~t~~e~~~~W----rPGG~Q~~A~~~~~~rlyvLM 256 (342)
T PF06433_consen 190 AYSRDGGRLYFVSYEGNVYSADLSGDSAKF---------GKPWSLLTDAEKADGW----RPGGWQLIAYHAASGRLYVLM 256 (342)
T ss_dssp EEETTTTEEEEEBTTSEEEEEEETTSSEEE---------EEEEESS-HHHHHTTE----EE-SSS-EEEETTTTEEEEEE
T ss_pred ceECCCCeEEEEecCCEEEEEeccCCcccc---------cCcccccCccccccCc----CCcceeeeeeccccCeEEEEe
Confidence 223333334444444554444433221100 0111111100000000 01112235565544333322
Q ss_pred c---CC-------eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceEEEeecc
Q 001319 823 T---GG-------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 823 ~---dg-------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
. +| .|.++|+.+++.+.++.. ..++.+++.+.++..+|.+.+ .++.+.+||..+|+.++++.+
T Consensus 257 h~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 257 HQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred cCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 1 11 399999999999999875 346889999996666776554 579999999999999988764
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.9e-06 Score=82.79 Aligned_cols=207 Identities=14% Similarity=0.220 Sum_probs=127.7
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.|+.+.|+-+- .|+++..++.+.......+.+.. .|.-..... +.+++..|.++-.+-+.+--+..++++.
T Consensus 38 ~~~~~~~v~~~--~lf~~e~~~~~ss~g~~r~~~~~-----~~~rt~~i~--~~~~~a~~sep~p~~~~s~~~t~V~~~~ 108 (319)
T KOG4714|consen 38 KLSKVSLSAEY--ILFTGETSSQIISLGKGRGRCIS-----LWERDDGID--PFKVLAKNSEIDPNDACTMTDNRVCIGY 108 (319)
T ss_pred EEEEeechhhh--eeecccchhheeeeccceEEEec-----hhhcccCcC--ceeeeeccCCCCCcccccccCCceEecC
Confidence 47778887764 56888888888877776665543 122111111 1223445555555555555678899999
Q ss_pred CCCeEEEEeecCCcccccceeee-cccCcEEEEEEecCCCceEEEEecCCce------EEEEEcC--CceeEEeecCCcC
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKL------IKVWELS--GRKLFNFEGHEAP 496 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~d~~------v~iwd~~--~~~~~~~~~h~~~ 496 (1101)
.||.+.+++.+.- ++...... .|.+ --+.+....+. .+.+ +.=|+ .++|+.. +..+.... ....
T Consensus 109 ~dg~~~v~s~~~~--~~~~~~i~~~~~~-~as~~~~~~~~--~i~s-~~~g~~n~~d~~~a~~~~p~~t~~~~~~-~~~~ 181 (319)
T KOG4714|consen 109 ADGSLAVFSTDKD--LALMSRIPSIHSG-SASRKICRHGN--SILS-GGCGNWNAQDNFYANTLDPIKTLIPSKK-ALDA 181 (319)
T ss_pred CCceEEEEechHH--Hhhhhhccccccc-ccccceeeccc--EEec-CCcceEeeccceeeeccccccccccccc-cccc
Confidence 9999999998762 22111111 1222 12223333444 2333 22333 3345411 11111111 2234
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCCC
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
|.+++-+|..+ +.+++|+.||.+-+||.+...... .+..|...+..+-|+| ++..|++++. +|.++.||..+
T Consensus 182 v~~l~~hp~qq-~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~se----dGslw~wdas~ 255 (319)
T KOG4714|consen 182 VTALCSHPAQQ-HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSE----DGSLWHWDAST 255 (319)
T ss_pred chhhhCCcccc-cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecC----CCcEEEEcCCC
Confidence 88999888754 688999999999999998875443 4567888899999998 6778999885 99999999874
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.00032 Score=67.95 Aligned_cols=116 Identities=8% Similarity=0.087 Sum_probs=81.7
Q ss_pred EecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEE
Q 001319 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1101)
Q Consensus 352 fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~ 431 (1101)
.-||.+++++.|+..+.+.--|..+|+..-.. . -..+|-+-+.- -|++++.|+..|.++
T Consensus 18 V~~dskT~v~igSHs~~~~avd~~sG~~~We~------------------i--lg~RiE~sa~v-vgdfVV~GCy~g~lY 76 (354)
T KOG4649|consen 18 VCNDSKTLVVIGSHSGIVIAVDPQSGNLIWEA------------------I--LGVRIECSAIV-VGDFVVLGCYSGGLY 76 (354)
T ss_pred EecCCceEEEEecCCceEEEecCCCCcEEeeh------------------h--hCceeeeeeEE-ECCEEEEEEccCcEE
Confidence 34556778889999999999999998876421 1 12233332222 578899999999999
Q ss_pred EEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 432 vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
+.+.++|+....+..+. .-=......+++. ++..|+.|++.+.-| .+..++...+..
T Consensus 77 fl~~~tGs~~w~f~~~~---~vk~~a~~d~~~g--lIycgshd~~~yalD~~~~~cVykskcg 134 (354)
T KOG4649|consen 77 FLCVKTGSQIWNFVILE---TVKVRAQCDFDGG--LIYCGSHDGNFYALDPKTYGCVYKSKCG 134 (354)
T ss_pred EEEecchhheeeeeehh---hhccceEEcCCCc--eEEEecCCCcEEEecccccceEEecccC
Confidence 99999997665332221 1112234556788 899999999999999 888888876643
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.8e-06 Score=97.17 Aligned_cols=179 Identities=15% Similarity=0.225 Sum_probs=135.2
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeE
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG 893 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~ 893 (1101)
++..++.|+ ...+..+|+.+.+..+...-..+.|+-+.. +++++.+|...|+|.+-|..+.+.+.++.+|++.|.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siSD 222 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSISD 222 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeeccccceee
Confidence 445566665 778999999998888777655555666665 7799999999999999999999999999999999987
Q ss_pred EEEcCCCCEEEEEeC---------CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC--CCEEEEEeCCeEEEE
Q 001319 894 LAFSTSLNILVSSGA---------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD--QVRMLVVHETQLAIY 962 (1101)
Q Consensus 894 l~~s~d~~~l~s~s~---------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~d~~i~v~ 962 (1101)
+.. .|+.|+++|. |..|+|||+..-+.+....+. ....-+.|.|. .+.++++..|...+-
T Consensus 223 fDv--~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~-------~~P~flrf~Psl~t~~~V~S~sGq~q~v 293 (1118)
T KOG1275|consen 223 FDV--QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFP-------YGPQFLRFHPSLTTRLAVTSQSGQFQFV 293 (1118)
T ss_pred eec--cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccc-------cCchhhhhcccccceEEEEecccceeec
Confidence 766 5889999875 556899999986655443332 23345677775 333444678999998
Q ss_pred EcCCcee----eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 963 DASKMER----IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 963 d~~~~~~----~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
|..+... +..+.+. ...+..+.+|++|..++.|..+|.|.+|.
T Consensus 294 d~~~lsNP~~~~~~v~p~---~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 294 DTATLSNPPAGVKMVNPN---GSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cccccCCCccceeEEccC---CCcceeEEecCCCceEEEecccCcEeeec
Confidence 8443221 2222221 55699999999999999999999999997
|
|
| >KOG0396 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=88.39 Aligned_cols=120 Identities=13% Similarity=0.177 Sum_probs=100.2
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC--------CCHHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFF--------FNMKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEI 76 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~--------~~~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i 76 (1101)
+.-+.|+|..|+..+||.+||..|-++|.+. .++..++++++.|+...|+.-.+.=...-.. ....+-|.+
T Consensus 115 r~~l~r~vvdhmlr~gy~~~A~~L~K~s~ledlvD~Dv~~~~~~I~~sll~~~l~~~Lswc~ehk~~LkK-~~S~lEf~l 193 (389)
T KOG0396|consen 115 RNKLDRFVVDHMLRNGYFGAAVLLGKKSQLEDLVDSDVYKRAYGIRDSLLAGELEPALSWCKEHKVELKK-EESSLEFQL 193 (389)
T ss_pred HHHHHHHHHHHHHHcCchhHHHHHHHhhhhhhhHhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHh-ccchhhhHH
Confidence 4457899999999999999999999999985 1278899999999999998877653211111 123388999
Q ss_pred HHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCcc
Q 001319 77 RKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFR 125 (1101)
Q Consensus 77 ~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~ 125 (1101)
+.|.|+||+..+++.+|+.+.++.+.|....+.++++....++.++...
T Consensus 194 RlQefIELi~~~~~~~Ai~~akk~f~~~~~~~~~~Lk~a~g~laF~~~t 242 (389)
T KOG0396|consen 194 RLQEFIELIKVDNYDKAIAFAKKHFAPWAKSHKSDLKLAMGLLAFPKYT 242 (389)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhhcCcccc
Confidence 9999999999999999999999999999888889999999999886443
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.1e-05 Score=88.17 Aligned_cols=183 Identities=10% Similarity=0.042 Sum_probs=120.9
Q ss_pred EEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC----cEEEEEeecceEEEe
Q 001319 810 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS----TIHIYNVRVDEVKSK 883 (1101)
Q Consensus 810 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg----~v~iwd~~~~~~~~~ 883 (1101)
+-+++||+.+...+ .+.+.+.|.++.+...++.-. +....+++++ +++++++.+.+. ++..-+..+...+..
T Consensus 198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vd-gnpd~v~~sp-dGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVD-GNLDNVDTDY-DGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred cccCCCCCEeecccceeEEEEEEECccceEEEEEEeC-CCcccceECC-CCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 44577888765444 577999999998887776653 3557789999 888888776322 232322222111111
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC----C-ccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT----W-EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E 956 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~----~-~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d 956 (1101)
+.- ..+ -++.++|++... .++.|.+.|..+ + +... .++.+ .....+.++|||+++++++ +
T Consensus 276 fni--~~i--ea~vkdGK~~~V--~gn~V~VID~~t~~~~~~~v~~----yIPVG---KsPHGV~vSPDGkylyVanklS 342 (635)
T PRK02888 276 FNI--ARI--EEAVKAGKFKTI--GGSKVPVVDGRKAANAGSALTR----YVPVP---KNPHGVNTSPDGKYFIANGKLS 342 (635)
T ss_pred Ech--HHH--HHhhhCCCEEEE--CCCEEEEEECCccccCCcceEE----EEECC---CCccceEECCCCCEEEEeCCCC
Confidence 110 000 133457876665 357799999887 2 2222 22222 5667899999999999964 8
Q ss_pred CeEEEEEcCCcee------------eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 957 TQLAIYDASKMER------------IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 957 ~~i~v~d~~~~~~------------~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
..+.|+|+.+.+. +.+... .......+|.++|....|-.-|..|..||+.+
T Consensus 343 ~tVSVIDv~k~k~~~~~~~~~~~~vvaevev----GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 343 PTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL----GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcEEEEEChhhhhhhhccCCccceEEEeecc----CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 8999999998663 344433 33445678999998888888999999999987
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.0001 Score=86.65 Aligned_cols=238 Identities=8% Similarity=0.130 Sum_probs=141.4
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
...|.++.|..++..++.+...|.|.+-|..+..... .. .-...|.+++||||+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~ei--------------------vg------~vd~GI~aaswS~De 121 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELEI--------------------VG------NVDNGISAASWSPDE 121 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEcccccceee--------------------ee------eccCceEEEeecCCC
Confidence 3689999999999999999999998876533221110 00 256779999999999
Q ss_pred CeEEEEcCCeEEEEECCCceEEEEeeCC-----CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCCCC
Q 001319 817 SYVMSATGGKISLFNMMTFKVMTTFMSP-----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKR 890 (1101)
Q Consensus 817 ~~la~~~dg~i~vwd~~~~~~~~~~~~~-----~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~ 890 (1101)
++++..+.+..-++...+..++..-..+ .+....+-|-. ....+ -|+ .|.....+....+. .....-| +.
T Consensus 122 e~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGr-keTqf-rgs-~gr~~~~~~~~~ek~~~~~~~~-~~ 197 (1265)
T KOG1920|consen 122 ELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGR-KETQF-RGS-EGRQAARQKIEKEKALEQIEQD-DH 197 (1265)
T ss_pred cEEEEEeCCcEEEEEeccccchhccccccccccccccceecccc-cceee-ecc-hhhhcccccccccccccchhhc-cC
Confidence 9999998655445555555544332221 11122233322 11111 111 11111111111100 0111112 22
Q ss_pred eeEEEEcCCCCEEEEEe----CC-CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE----eCCeEEE
Q 001319 891 ITGLAFSTSLNILVSSG----AD-AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV----HETQLAI 961 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s----~D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~----~d~~i~v 961 (1101)
=+.+.|--||+++|+.. .+ +.|+|||-+ |....... ....--.+++|-|.|..+++- +|+.|.+
T Consensus 198 ~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se------~~~~l~~~LsWkPsgs~iA~iq~~~sd~~Ivf 270 (1265)
T KOG1920|consen 198 KTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE------PVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVF 270 (1265)
T ss_pred CceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC------cccccccceeecCCCCeEeeeeecCCCCcEEE
Confidence 35699999999998832 23 789999988 43322211 111445679999999999982 4678999
Q ss_pred EEcCCce---eeeEeccCCCCCCCEEEEEEccCCCEEEE---EeCCCcEEEEeCCCCce
Q 001319 962 YDASKME---RIRQWTPQDALSAPISCAVYSCNSQLVFA---TFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 962 ~d~~~~~---~~~~~~~~~~h~~~v~~v~~s~dg~~l~s---~~~dg~i~vwd~~~~~~ 1014 (1101)
|.-+... ....+... ..+|..++|+.++..|++ ......|++|-..+...
T Consensus 271 fErNGL~hg~f~l~~p~d---e~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhW 326 (1265)
T KOG1920|consen 271 FERNGLRHGEFVLPFPLD---EKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHW 326 (1265)
T ss_pred EecCCccccccccCCccc---ccchheeeecCCCCceeeeecccccceEEEEEecCeEE
Confidence 9866433 22222221 455999999999999987 44455599999988643
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.49 E-value=3.8e-05 Score=85.01 Aligned_cols=265 Identities=15% Similarity=0.228 Sum_probs=145.9
Q ss_pred ecCCceEEEEE--------eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 353 HPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 353 spdg~~llasg--------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
||||+++|..- +..+.+.|||+.+++... +......+....|||||+++|..
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~--------------------l~~~~~~~~~~~~sP~g~~~~~v 60 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITP--------------------LTPPPPKLQDAKWSPDGKYIAFV 60 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEE--------------------SS-EETTBSEEEE-SSSTEEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEE--------------------CcCCccccccceeecCCCeeEEE
Confidence 78999776532 234578899998876543 22225678899999999999988
Q ss_pred ECCCeEEEEeecCCcccccceeeec-------c---------cCcEEEEEEecCCCceEEEEecCCceEE----------
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDA-------H---------VGAVNDLAFAYPNKLLCVVTCGDDKLIK---------- 478 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~-------h---------~~~V~~l~~s~d~~~~~l~s~~~d~~v~---------- 478 (1101)
. ++.|.+++..+++..+. +..| - -+.-..+-|||||+++.++.. ++..|.
T Consensus 61 ~-~~nly~~~~~~~~~~~l--T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~-d~~~v~~~~~~~~~~~ 136 (353)
T PF00930_consen 61 R-DNNLYLRDLATGQETQL--TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRF-DEREVPEYPLPDYSPP 136 (353)
T ss_dssp E-TTEEEEESSTTSEEEES--ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEE-E-TTS-EEEEEEESSS
T ss_pred e-cCceEEEECCCCCeEEe--ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEE-CCcCCceEEeeccCCc
Confidence 5 56799999887754332 1112 0 112356889999996322222 222222
Q ss_pred -------------------------EEE-cCCceeE-E-e---ecCCcCeEEEecccCCCccEEEEe--ccC---CeEEE
Q 001319 479 -------------------------VWE-LSGRKLF-N-F---EGHEAPVYSICPHHKENIQFIFST--AID---GKIKA 522 (1101)
Q Consensus 479 -------------------------iwd-~~~~~~~-~-~---~~h~~~v~~v~~~~~~~~~~l~s~--~~d---~~i~~ 522 (1101)
|+| .+++... . . ..-...+..+.|.+ ++..++.. ..+ ..+.+
T Consensus 137 ~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~--d~~~l~~~~~nR~q~~~~l~~ 214 (353)
T PF00930_consen 137 DSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP--DGKRLWVQWLNRDQNRLDLVL 214 (353)
T ss_dssp TESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE--TTEEEEEEEEETTSTEEEEEE
T ss_pred cccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC--CCcEEEEEEcccCCCEEEEEE
Confidence 233 2221110 0 0 11222355556655 33423222 222 23555
Q ss_pred EecCCCCeeeeccC-CCCce---EEEEEc-cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcce-EEEEEeCC
Q 001319 523 WLYDTMGSRVDYDA-PGHWC---TTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN-GVVQFDTT 596 (1101)
Q Consensus 523 wd~~~~~~~~~~~~-~~~~v---~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v-~~~~~~~~ 596 (1101)
.|..++........ ...+| ....+. +++..++..+. .+|-..|.+++...+.......|. - .| ..+.++++
T Consensus 215 ~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~-~~G~~hly~~~~~~~~~~~lT~G~-~-~V~~i~~~d~~ 291 (353)
T PF00930_consen 215 CDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISE-RDGYRHLYLYDLDGGKPRQLTSGD-W-EVTSILGWDED 291 (353)
T ss_dssp EEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEE-TTSSEEEEEEETTSSEEEESS-SS-S--EEEEEEEECT
T ss_pred EECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEE-cCCCcEEEEEcccccceeccccCc-e-eecccceEcCC
Confidence 67666554433221 22222 355554 78887777765 667788888898888755333332 2 34 45888998
Q ss_pred CCEEEE-EeC----CCcEEEEECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 597 QNHFLA-VGE----DSQIKFWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 597 ~~~l~~-~~~----dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
++.++. +.. ...|+.-++. .+.. ..+...... -..+.|||+|++++....
T Consensus 292 ~~~iyf~a~~~~p~~r~lY~v~~~~~~~~-~~LT~~~~~--~~~~~~Spdg~y~v~~~s 347 (353)
T PF00930_consen 292 NNRIYFTANGDNPGERHLYRVSLDSGGEP-KCLTCEDGD--HYSASFSPDGKYYVDTYS 347 (353)
T ss_dssp SSEEEEEESSGGTTSBEEEEEETTETTEE-EESSTTSST--TEEEEE-TTSSEEEEEEE
T ss_pred CCEEEEEecCCCCCceEEEEEEeCCCCCe-EeccCCCCC--ceEEEECCCCCEEEEEEc
Confidence 887765 443 3357777777 4444 444433321 148999999999886554
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.48 E-value=4.5e-07 Score=90.53 Aligned_cols=167 Identities=16% Similarity=0.114 Sum_probs=122.2
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d 427 (1101)
+.++||-+-.-.-++.+.+..|-|-|+.+|.... |. ....|.++.|...+..+..|+.+
T Consensus 215 ~~CawSlni~gyhfs~G~sqqv~L~nvetg~~qs--------------------f~-sksDVfAlQf~~s~nLv~~GcRn 273 (425)
T KOG2695|consen 215 WSCAWSLNIMGYHFSVGLSQQVLLTNVETGHQQS--------------------FQ-SKSDVFALQFAGSDNLVFNGCRN 273 (425)
T ss_pred hhhhhhhccceeeecccccceeEEEEeecccccc--------------------cc-cchhHHHHHhcccCCeeEecccC
Confidence 3446654321111333466788899999886432 22 56789999999999999999999
Q ss_pred CeEEEEeecCCccc--ccceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cCCce---eEEeecCCcCeEEE
Q 001319 428 HLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEGHEAPVYSI 500 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~~~~---~~~~~~h~~~v~~v 500 (1101)
|.|.++|+..+..- ... .---|...|+++.... +++ +|++.+.+|+|++|| .--++ +..+.||-..-.-+
T Consensus 274 geI~~iDLR~rnqG~~~~a-~rlyh~Ssvtslq~Lq~s~q--~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l 350 (425)
T KOG2695|consen 274 GEIFVIDLRCRNQGNGWCA-QRLYHDSSVTSLQILQFSQQ--KLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYL 350 (425)
T ss_pred CcEEEEEeeecccCCCcce-EEEEcCcchhhhhhhccccc--eEeeccCcCceeEeeehhhhcccceeeeeccccccccc
Confidence 99999999865210 011 1225889999998877 566 788999999999999 54455 89999997766666
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
-++-.+....+++++.|...|+|.++.+....++....
T Consensus 351 ~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 351 PAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred ccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 55555566789999999999999999888777665543
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.45 E-value=5.9e-07 Score=62.47 Aligned_cols=39 Identities=28% Similarity=0.564 Sum_probs=37.1
Q ss_pred ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001319 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 878 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
++++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 467889999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.1e-07 Score=103.67 Aligned_cols=200 Identities=19% Similarity=0.221 Sum_probs=145.2
Q ss_pred ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC--cE
Q 001319 835 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA--QL 912 (1101)
Q Consensus 835 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg--~v 912 (1101)
.+...+|..|...-+|++|+- +.++|++|+-.|.|++|++.+|.......+|..+|+.+.-+.||..+.+.+.-. ..
T Consensus 1091 Fr~w~~frd~~~~fTc~afs~-~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1091 FRSWRSFRDETALFTCIAFSG-GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred cccchhhhccccceeeEEeec-CCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchH
Confidence 344566777888999999999 889999999999999999999999999999999999999999998777665443 47
Q ss_pred EEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeE-eccCCCCCCCEEEEEEcc
Q 001319 913 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQ-WTPQDALSAPISCAVYSC 990 (1101)
Q Consensus 913 ~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~-~~~~~~h~~~v~~v~~s~ 990 (1101)
.+|++.+--. ..|......++.|+.....-+.|. .....+||+.++..... +....+....-.++.|||
T Consensus 1170 aLW~~~s~~~---------~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP 1240 (1516)
T KOG1832|consen 1170 ALWDASSTGG---------PRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSP 1240 (1516)
T ss_pred HHhccccccC---------ccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCC
Confidence 8999876111 112225667788887755444443 46789999999988776 333333344458899999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 991 NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 991 dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.++++ +|| .+||+...+.++++..... + ..=.|+|+ +..++.-+ -|||+.|-+
T Consensus 1241 ~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~------------~-~~G~FHP~-g~eVIINS-----EIwD~RTF~ 1294 (1516)
T KOG1832|consen 1241 CDTLIL---NDG--VLWDVRIPEAIHRFDQFTD------------Y-GGGGFHPS-GNEVIINS-----EIWDMRTFK 1294 (1516)
T ss_pred CcceEe---eCc--eeeeeccHHHHhhhhhhee------------c-ccccccCC-CceEEeec-----hhhhhHHHH
Confidence 999887 455 5799999888877763221 1 12247774 55444433 367776655
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.9e-05 Score=85.35 Aligned_cols=137 Identities=15% Similarity=0.146 Sum_probs=91.0
Q ss_pred cCCCCeEEEEcCCeEEEEECCC-----ceEEEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceE------
Q 001319 813 SKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEV------ 880 (1101)
Q Consensus 813 s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~------ 880 (1101)
.+||++... .+++|.+.|..+ .+.+..+.. ......+.++| ||+++++++ .+++|.|.|+.+.+.
T Consensus 285 vkdGK~~~V-~gn~V~VID~~t~~~~~~~v~~yIPV-GKsPHGV~vSP-DGkylyVanklS~tVSVIDv~k~k~~~~~~~ 361 (635)
T PRK02888 285 VKAGKFKTI-GGSKVPVVDGRKAANAGSALTRYVPV-PKNPHGVNTSP-DGKYFIANGKLSPTVTVIDVRKLDDLFDGKI 361 (635)
T ss_pred hhCCCEEEE-CCCEEEEEECCccccCCcceEEEEEC-CCCccceEECC-CCCEEEEeCCCCCcEEEEEChhhhhhhhccC
Confidence 346765554 467899999887 345555543 55678899999 777665554 589999999987542
Q ss_pred ------EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC----------CccccceEEeecCCCCCCCcceEEE
Q 001319 881 ------KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT----------WEKRKSVTIHIPAGKTPTGDTRVQF 944 (1101)
Q Consensus 881 ------~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~----------~~~~~~~~~~~~~~~~~~~v~~~~~ 944 (1101)
..+..- .......+|.++|+...|..-|..|..|++.. ...+....++...+|. .....=.-
T Consensus 362 ~~~~~vvaevev-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~-~~~~g~t~ 439 (635)
T PRK02888 362 KPRDAVVAEPEL-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHN-HASMGETK 439 (635)
T ss_pred CccceEEEeecc-CCCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCcccee-eecCCCcC
Confidence 333332 22345688999999889999999999999987 2223333333333332 11122234
Q ss_pred cCCCCEEEEE
Q 001319 945 NADQVRMLVV 954 (1101)
Q Consensus 945 s~d~~~l~~~ 954 (1101)
.|||++|++.
T Consensus 440 ~~dgk~l~~~ 449 (635)
T PRK02888 440 EADGKWLVSL 449 (635)
T ss_pred CCCCCEEEEc
Confidence 7899999984
|
|
| >PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10 | Back alignment and domain information |
|---|
Probab=98.41 E-value=1e-06 Score=83.28 Aligned_cols=134 Identities=22% Similarity=0.217 Sum_probs=97.9
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHH
Q 001319 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQ 117 (1101)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~ 117 (1101)
...++++|++|+++.|++.++...+......+ .+.|.|++|+|+|++..++..+|+.+.|+.+.|......+.++.+..
T Consensus 5 r~~I~~~I~~g~i~~Ai~w~~~~~~~l~~~~~-~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l~~~~~~~~~~l~~~~~ 83 (145)
T PF10607_consen 5 RKKIRQAILNGDIDPAIEWLNENFPELLKRNS-SLEFELRCQQFIELLREGDIMEAIEYARKHLSPFNDEFLEELKKLMS 83 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHHhcCC-chhHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 56899999999999999999987433322223 38999999999999999999999999999998774445678888888
Q ss_pred hhcccCccc--cccccccCCchHHHHHHHHHHHhhcccCcccccccCCCCCC-hHHHHHHHHHHHHHH
Q 001319 118 LLTLSNFRE--NEQLSKYGDTKTARGIMLIELKKLIEANPLFRDKLAFPTLK-SSRLRTLINQSLNWQ 182 (1101)
Q Consensus 118 ~l~~~~~~~--~~~~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~~~~p-~~rL~~ll~qa~~~q 182 (1101)
+|...+... ......+-+ ...|+.|.+.+.+.+-...- +| ...|..++++....+
T Consensus 84 lL~~~~~~~~~~s~~~~l~~-~~~~~~la~~~~~~~l~~~~---------~~~~s~L~~~~~~g~~~l 141 (145)
T PF10607_consen 84 LLAYPDPEEPLPSPYKELLS-PERREELAEEFNSAILKSYG---------LPKESPLEVILKAGLSAL 141 (145)
T ss_pred HHHcCCcccccchHHHHHhC-hHHHHHHHHHHHHHHHHHhC---------cCCCCHHHHHHHHHHHHh
Confidence 888766554 222222222 36778888888776544221 33 356888888776544
|
RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined []. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.6e-06 Score=91.95 Aligned_cols=191 Identities=15% Similarity=0.167 Sum_probs=136.3
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcccc
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRK 924 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~ 924 (1101)
...++|++++ +++++-|+.+|.|++++.... . .....|+.. ..+|.+++||+.||+|.|-.+.+.+...
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~-~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~sl~~~~~~~ 107 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGN-P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGSLFTDDEIT 107 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCc-c-ccccccccc------ccCCceEEEecCCCcEEEeeccCCccce
Confidence 3467888885 479999999999999997643 2 333345544 5679999999999999999999877665
Q ss_pred ceEEeecCCCCCCCcceEEEcCC-----CCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001319 925 SVTIHIPAGKTPTGDTRVQFNAD-----QVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~v~~~~~s~d-----~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
...++ .++.+++++|| .+.+++|+...+.++.-.-.........+.+ .++|.++.|- |.++|=++
T Consensus 108 ~~df~-------rpiksial~Pd~~~~~sk~fv~GG~aglvL~er~wlgnk~~v~l~~~-eG~I~~i~W~--g~lIAWan 177 (846)
T KOG2066|consen 108 QYDFK-------RPIKSIALHPDFSRQQSKQFVSGGMAGLVLSERNWLGNKDSVVLSEG-EGPIHSIKWR--GNLIAWAN 177 (846)
T ss_pred eEecC-------CcceeEEeccchhhhhhhheeecCcceEEEehhhhhcCccceeeecC-ccceEEEEec--CcEEEEec
Confidence 55554 68899999998 5667776654488876543222222222211 8899999995 88888888
Q ss_pred CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1000 CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1000 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.+| |+|||..+++.+..+...... .....++-.+.|.+ ...|+. |+..+|+|..+..
T Consensus 178 d~G-v~vyd~~~~~~l~~i~~p~~~------~R~e~fpphl~W~~--~~~LVI-GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 178 DDG-VKVYDTPTRQRLTNIPPPSQS------VRPELFPPHLHWQD--EDRLVI-GWGDSVKICSIKK 234 (846)
T ss_pred CCC-cEEEeccccceeeccCCCCCC------CCcccCCCceEecC--CCeEEE-ecCCeEEEEEEec
Confidence 666 999999999998888754421 12234455788887 345555 4667889988873
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00026 Score=75.12 Aligned_cols=177 Identities=13% Similarity=0.123 Sum_probs=91.4
Q ss_pred CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC---CC-cEEEEEeec-ceEEEeeccCC--CCeeEEEEc
Q 001319 825 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DS-TIHIYNVRV-DEVKSKLKGHQ--KRITGLAFS 897 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---dg-~v~iwd~~~-~~~~~~~~~h~--~~V~~l~~s 897 (1101)
..|.-.|+.+|+....+.. ...+..+.|||.+..+|+.+-+ +. .-+||-+.+ +.....+..|. ..+..=-|.
T Consensus 168 ~~i~~idl~tG~~~~v~~~-~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~ 246 (386)
T PF14583_consen 168 CRIFTIDLKTGERKVVFED-TDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV 246 (386)
T ss_dssp EEEEEEETTT--EEEEEEE-SS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-
T ss_pred ceEEEEECCCCceeEEEec-CccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc
Confidence 3466667888877666653 5667889999977777777653 22 236777764 34444444333 234455689
Q ss_pred CCCCEEEEEe-----CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCC--------------
Q 001319 898 TSLNILVSSG-----ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHET-------------- 957 (1101)
Q Consensus 898 ~d~~~l~s~s-----~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~-------------- 957 (1101)
|||..+.--+ .+..|.-+|+.+++.... ... .....+..++||++++. |+|.
T Consensus 247 ~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~~~--~~~------p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~ 318 (386)
T PF14583_consen 247 PDGSTIWYDSYTPGGQDFWIAGYDPDTGERRRL--MEM------PWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIEN 318 (386)
T ss_dssp TTSS-EEEEEEETTT--EEEEEE-TTT--EEEE--EEE-------SEEEEEE-TTSSEEEEEE-----------------
T ss_pred CCCCEEEEEeecCCCCceEEEeeCCCCCCceEE--EeC------CceeeeEEcCCCCEEEecCCCCCccccccccceecC
Confidence 9998766532 244677788888764322 221 23456777899999887 4432
Q ss_pred --eEEEEEcCCceeeeEecc------CCCCC-CCEEEEEEccCCCEEE-EEeCCCcEEEEeCC
Q 001319 958 --QLAIYDASKMERIRQWTP------QDALS-APISCAVYSCNSQLVF-ATFCDGNIGVFDAD 1010 (1101)
Q Consensus 958 --~i~v~d~~~~~~~~~~~~------~~~h~-~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~ 1010 (1101)
.|++++...+........ ..++. ..=-.+.|||||++|+ ++...|...||-++
T Consensus 319 ~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 319 DPWIYLFDVEAGRFRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp --EEEEEETTTTEEEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred CcEEEEeccccCceeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 466778876664322110 00000 0124689999999876 56678887777543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.1e-06 Score=87.74 Aligned_cols=213 Identities=13% Similarity=0.082 Sum_probs=149.0
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec--c-eEEEeeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECC
Q 001319 843 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV--D-EVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSID 918 (1101)
Q Consensus 843 ~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~--~-~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~ 918 (1101)
.|...|+.+..+ -.+++.+++.||.++.|.-.. + +.+..+..|.+.|.+++.+.|+..+.|.+. |..++++|+.
T Consensus 7 mhrd~i~hv~~t--ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT--KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee--hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEee
Confidence 366777777666 467999999999999997543 1 445667789999999999999999999887 9999999998
Q ss_pred CCccccceEEeecCCCCCCCcceEEEcCC-CC-EEEEE--eCCeEEEEEcCCce-eeeEeccCCCCCCCEEEEEEccCCC
Q 001319 919 TWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QV-RMLVV--HETQLAIYDASKME-RIRQWTPQDALSAPISCAVYSCNSQ 993 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~-~l~~~--~d~~i~v~d~~~~~-~~~~~~~~~~h~~~v~~v~~s~dg~ 993 (1101)
+........+..+.+ .+ ....++. -. .++++ .++.+.|+|-.... ....+.. -|..+|.++.+.+-+.
T Consensus 85 n~DminmiKL~~lPg----~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkk--lH~sPV~~i~y~qa~D 157 (558)
T KOG0882|consen 85 NFDMINMIKLVDLPG----FA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKK--LHFSPVKKIRYNQAGD 157 (558)
T ss_pred ccchhhhcccccCCC----ce-EEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecc--cccCceEEEEeecccc
Confidence 855443332222111 11 1222222 11 34443 47899999976544 3333333 3489999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC------CceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 994 LVFATFCDGNIGVFDADT------LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 994 ~l~s~~~dg~i~vwd~~~------~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
..++....|.|.-|..+. .++...+.....+..- ......+.++.|+| ++..+.+-+.|..|+++++.++
T Consensus 158 s~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f---~K~Kt~pts~Efsp-~g~qistl~~DrkVR~F~~KtG 233 (558)
T KOG0882|consen 158 SAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGF---PKAKTEPTSFEFSP-DGAQISTLNPDRKVRGFVFKTG 233 (558)
T ss_pred ceeeccccceeEeecCCCcccCccccccccccccchhhcc---cccccCccceEEcc-ccCcccccCcccEEEEEEeccc
Confidence 999999999999999883 1121111111111111 23334567899999 7999999999999999999998
Q ss_pred C
Q 001319 1068 E 1068 (1101)
Q Consensus 1068 ~ 1068 (1101)
+
T Consensus 234 k 234 (558)
T KOG0882|consen 234 K 234 (558)
T ss_pred h
Confidence 8
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.36 E-value=8.7e-05 Score=82.23 Aligned_cols=286 Identities=14% Similarity=0.099 Sum_probs=165.8
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
|...|.--+++..++| ++.|+.-|.+.+|+-.+++.... ...+-.+.+..+..|++..++|
T Consensus 32 ~~~~v~lTc~dst~~~-l~~GsS~G~lyl~~R~~~~~~~~------------------~~~~~~~~~~~~~vs~~e~lvA 92 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEY-LAMGSSAGSVYLYNRHTGEMRKL------------------KNEGATGITCVRSVSSVEYLVA 92 (726)
T ss_pred CcceEEEEEeecCCce-EEEecccceEEEEecCchhhhcc------------------cccCccceEEEEEecchhHhhh
Confidence 4556777777888886 58999999999999887765431 1344566788889999999999
Q ss_pred EEECCCeEEEEeecCCccccccee---eecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc-----eeEEeecCC
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQ---IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR-----KLFNFEGHE 494 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~---l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~-----~~~~~~~h~ 494 (1101)
.|+..|.|.|+-+..+........ -..|...|++++|++|+. .+++|...|.|..-..+.. ..+.+..-.
T Consensus 93 agt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~--k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~d 170 (726)
T KOG3621|consen 93 AGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGM--KLYSGDSQGKVVLTELDSRQAFLSKSQEILSED 170 (726)
T ss_pred hhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEeccccc--EEeecCCCceEEEEEechhhhhccccceeeccC
Confidence 999999999999887543222111 124778999999999999 7999999999988773331 123333445
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCc--eEEEEEccC----CCEEEEeecCCCCCceEEE
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW--CTTMLYSAD----GSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~--v~~~~~s~d----~~~l~~~~~~~~~~~~i~i 568 (1101)
+.|..+... ++ +|+.++.-+.+ +++.+..+....-...... -...+|-|. ..-.+.|+ ..-.++
T Consensus 171 s~IVQlD~~---q~-~LLVStl~r~~-Lc~tE~eti~QIG~k~R~~~~~~GACF~~g~~~~q~~~Iyca-----RPG~Rl 240 (726)
T KOG3621|consen 171 SEIVQLDYL---QS-YLLVSTLTRCI-LCQTEAETITQIGKKPRKSLIDFGACFFPGQCKAQKPQIYCA-----RPGLRL 240 (726)
T ss_pred cceEEeecc---cc-eehHhhhhhhh-eeecchhHHHHhcCCCcCCccccceEEeeccccCCCceEEEe-----cCCCce
Confidence 667666643 22 33333333333 2333322211111111111 223444443 33344443 334677
Q ss_pred EeCC-CCeeEEEeccc-------------CC----------cceEEEE----EeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 569 WNES-EGTIKRTYAGF-------------RK----------KSNGVVQ----FDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 569 wd~~-~~~~~~~~~~~-------------~~----------~~v~~~~----~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
|..+ .|+.+++..-. .. ..-..+. +.-.+.++++-++-| |+|+|.++...+
T Consensus 241 Wead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l~~~~vLa~te~G-iyv~d~~~~~v~ 319 (726)
T KOG3621|consen 241 WEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTLHSDRVLAWTEVG-IYVFDSNNSQVY 319 (726)
T ss_pred EEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEeecceEEEeecce-EEEEEeccceEE
Confidence 8655 24444332110 00 0000011 111223455555444 889998876655
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL 665 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~ 665 (1101)
.-..... .|.. .+..|+-|++-..|+.+++..+.+..+.+
T Consensus 320 l~se~~~---DI~d--Vs~~~neiFvL~~d~~l~~~sv~s~qr~l 359 (726)
T KOG3621|consen 320 LWSEGGH---DILD--VSHCGNEIFVLNLDRGLKVESVASRQRKL 359 (726)
T ss_pred EeecCCC---ceeE--EeecCceEEEEecCCceeEEEeehhHHHH
Confidence 4443221 3433 44467778888888888888777664443
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.35 E-value=2.2e-05 Score=80.65 Aligned_cols=244 Identities=14% Similarity=0.109 Sum_probs=145.0
Q ss_pred CCCCEeEEEecCCCC-eEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 803 LEEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
+...|..++|||..+ ++..++ +.+|+|.|+++..++..+..+ ..+.+++|.-++.++|..|..+|.|+|||+...+-
T Consensus 192 ~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~ 270 (463)
T KOG1645|consen 192 EGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG 270 (463)
T ss_pred cchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc
Confidence 778899999999887 667777 889999999999999888887 78999999997788999999999999999985432
Q ss_pred -EEeecc--CCCCeeEEEE------cCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEE
Q 001319 881 -KSKLKG--HQKRITGLAF------STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 881 -~~~~~~--h~~~V~~l~~------s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 951 (1101)
+..+.+ ...+|..++. .+-|.+|+....+ +..|++.....-..... +-..++...++...+-.+.+
T Consensus 271 ~~~e~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vl---ele~pG~cismqy~~~snh~ 345 (463)
T KOG1645|consen 271 PLMELVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVL---ELEPPGICISMQYHGVSNHL 345 (463)
T ss_pred hHhhhhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCccc---ccCCCcceeeeeecCccceE
Confidence 222221 2233433332 3345566655554 67787765332211111 11112455566666655555
Q ss_pred EEEe-C-------CeEEE-EEcCCceeeeEeccCC-CC----CCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeE
Q 001319 952 LVVH-E-------TQLAI-YDASKMERIRQWTPQD-AL----SAPISCAVYSCNSQLVF-ATFCDGNIGVFDADTLRLRC 1016 (1101)
Q Consensus 952 ~~~~-d-------~~i~v-~d~~~~~~~~~~~~~~-~h----~~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~~~~~~~ 1016 (1101)
+++. . ..+-+ -|..+|..+....... +. -..-..+.-.+|..+|+ +|+..+.+.+||..+++...
T Consensus 346 l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ 425 (463)
T KOG1645|consen 346 LLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQ 425 (463)
T ss_pred EEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceeccccccEEEEecCCcceeEEeccchhheee
Confidence 5532 1 11111 1222333333222211 00 00111222245666655 56677889999999999998
Q ss_pred eeCCCCcCCCcccCCCCccceEEEEEecC-CCCEEEEEECCCeEEEEeCCC
Q 001319 1017 YIAPSTYLSPSVLNGSQTVYPLVVAAHPL-EPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~h~~~~~~~~l~~~p~-d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
++.. ..++ ..+..... .+.+|++- .|..++|+..+.
T Consensus 426 ~l~~-----------~epv--~Dicp~~~n~~syLa~L-Td~~v~Iyk~es 462 (463)
T KOG1645|consen 426 TLAL-----------SEPV--LDICPNDTNGSSYLALL-TDDRVHIYKNES 462 (463)
T ss_pred eccc-----------Ccce--eecceeecCCcchhhhe-ecceEEEEecCC
Confidence 8873 2222 23332222 34455544 566788876543
|
|
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.7e-06 Score=86.63 Aligned_cols=166 Identities=11% Similarity=0.132 Sum_probs=123.1
Q ss_pred EEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC----Ce
Q 001319 455 NDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM----GS 530 (1101)
Q Consensus 455 ~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~----~~ 530 (1101)
+.++|+-+-.- +-++.+.+..|-+-|..+...+.|. ..+.|.++.|... +.+++.|...|.|...|++.. ..
T Consensus 215 ~~CawSlni~g-yhfs~G~sqqv~L~nvetg~~qsf~-sksDVfAlQf~~s--~nLv~~GcRngeI~~iDLR~rnqG~~~ 290 (425)
T KOG2695|consen 215 WSCAWSLNIMG-YHFSVGLSQQVLLTNVETGHQQSFQ-SKSDVFALQFAGS--DNLVFNGCRNGEIFVIDLRCRNQGNGW 290 (425)
T ss_pred hhhhhhhccce-eeecccccceeEEEEeecccccccc-cchhHHHHHhccc--CCeeEecccCCcEEEEEeeecccCCCc
Confidence 34477654332 2366677888889994444445555 6677888888763 469999999999999999876 33
Q ss_pred eeeccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCCCCee---EEEecccCCcceE-EEEEeCCCCEEEEEeC
Q 001319 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNG-VVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 531 ~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~-~~~~~~~~~~l~~~~~ 605 (1101)
......|+..|+++..-. ++.+|++.+. +|.|.+||.+--++ ++.+.||.+.... -+-+.+....++++|.
T Consensus 291 ~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M----~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~Gd 366 (425)
T KOG2695|consen 291 CAQRLYHDSSVTSLQILQFSQQKLMASDM----TGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGD 366 (425)
T ss_pred ceEEEEcCcchhhhhhhccccceEeeccC----cCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccC
Confidence 334445777888888776 6777777654 89999999987666 9999999763322 2445677788999999
Q ss_pred CCcEEEEECCCCeeeEeeccCCC
Q 001319 606 DSQIKFWDMDNVNILTSTDAEGG 628 (1101)
Q Consensus 606 dg~i~iwd~~~~~~~~~~~~~~~ 628 (1101)
|...+||.+..+.++.+++....
T Consensus 367 DcytRiWsl~~ghLl~tipf~~s 389 (425)
T KOG2695|consen 367 DCYTRIWSLDSGHLLCTIPFPYS 389 (425)
T ss_pred eeEEEEEecccCceeeccCCCCc
Confidence 99999999999999998876543
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.00035 Score=77.35 Aligned_cols=299 Identities=16% Similarity=0.151 Sum_probs=151.4
Q ss_pred eCCCCEEEEEe---------CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccc
Q 001319 594 DTTQNHFLAVG---------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRS 664 (1101)
Q Consensus 594 ~~~~~~l~~~~---------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~ 664 (1101)
|||+++++... ..+.+.++|+.+++....... ...+....|||+|+.++... ++.|.+++..++...
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~---~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~ 76 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP---PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQET 76 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E---ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC---ccccccceeecCCCeeEEEe-cCceEEEECCCCCeE
Confidence 46676666632 346789999999876655443 23678999999999999887 578999987666222
Q ss_pred cccccCCCc-----------ccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCC
Q 001319 665 LRAVENPPF-----------EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPES 733 (1101)
Q Consensus 665 ~~~~~~~~~-----------~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 733 (1101)
.-+..+... +.....-..+-++||++.+ .+...+....+.+.++..
T Consensus 77 ~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~l-----------------------a~~~~d~~~v~~~~~~~~ 133 (353)
T PF00930_consen 77 QLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYL-----------------------AFLRFDEREVPEYPLPDY 133 (353)
T ss_dssp ESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEE-----------------------EEEEEE-TTS-EEEEEEE
T ss_pred EeccccceeEEcCccceeccccccccccceEECCCCCEE-----------------------EEEEECCcCCceEEeecc
Confidence 111111000 0001112345566666655 333333333333333321
Q ss_pred CCCcc---cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccC--CCCCCCCEe
Q 001319 734 TDTSS---KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA--GVNLEEAVP 808 (1101)
Q Consensus 734 ~~~~~---~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~ 808 (1101)
..... .+..+.+-.-| .......+.++++.++........ .......+.
T Consensus 134 ~~~~~~yp~~~~~~YPk~G--------------------------~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~ 187 (353)
T PF00930_consen 134 SPPDSQYPEVESIRYPKAG--------------------------DPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLT 187 (353)
T ss_dssp SSSTESS-EEEEEE--BTT--------------------------S---EEEEEEEESSSTCCCEE---HHHHTSSEEEE
T ss_pred CCccccCCcccccccCCCC--------------------------CcCCceEEEEEECCCCcEEEeeeccccCCCccCcc
Confidence 11111 22222222111 111222333445555543222211 012466788
Q ss_pred EEEecCCCCeEE-EEc--C-C--eEEEEECCCceEEEEeeCC-CC---CeeEEEEe-cCCCCEEEEEeCCCcEEEEEee-
Q 001319 809 CIALSKNDSYVM-SAT--G-G--KISLFNMMTFKVMTTFMSP-PP---ASTFLAFH-PQDNNIIAIGTEDSTIHIYNVR- 876 (1101)
Q Consensus 809 ~~~~s~dg~~la-~~~--d-g--~i~vwd~~~~~~~~~~~~~-~~---~i~~l~~s-~~~~~~la~g~~dg~v~iwd~~- 876 (1101)
.+.|++|++.++ .-. + . .+.+.|..++.+....... .. .-....|. +++..+|.....||--+||-+.
T Consensus 188 ~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~ 267 (353)
T PF00930_consen 188 RVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDL 267 (353)
T ss_dssp EEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEET
T ss_pred cceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcc
Confidence 999999999443 332 2 2 3777788777654443321 22 23355655 6466777777788865555554
Q ss_pred -cceEEEeeccCCCCeeE-EEEcCCCCEEE-EEeCC--Cc--EEEEECC-CCccccceEEeecCCCCCCCc-ceEEEcCC
Q 001319 877 -VDEVKSKLKGHQKRITG-LAFSTSLNILV-SSGAD--AQ--LCVWSID-TWEKRKSVTIHIPAGKTPTGD-TRVQFNAD 947 (1101)
Q Consensus 877 -~~~~~~~~~~h~~~V~~-l~~s~d~~~l~-s~s~D--g~--v~lwd~~-~~~~~~~~~~~~~~~~~~~~v-~~~~~s~d 947 (1101)
.+. ...+....-.|.. +.++++++.+. ++..+ +. |..-++. .++. .++. .. ... ..+.|||+
T Consensus 268 ~~~~-~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~---~~LT---~~--~~~~~~~~~Spd 338 (353)
T PF00930_consen 268 DGGK-PRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEP---KCLT---CE--DGDHYSASFSPD 338 (353)
T ss_dssp TSSE-EEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEE---EESS---TT--SSTTEEEEE-TT
T ss_pred cccc-eeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCe---Eecc---CC--CCCceEEEECCC
Confidence 444 3455545566744 67888877554 44442 23 4444555 3221 1222 11 222 58999999
Q ss_pred CCEEEEE
Q 001319 948 QVRMLVV 954 (1101)
Q Consensus 948 ~~~l~~~ 954 (1101)
+++++..
T Consensus 339 g~y~v~~ 345 (353)
T PF00930_consen 339 GKYYVDT 345 (353)
T ss_dssp SSEEEEE
T ss_pred CCEEEEE
Confidence 9998863
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.28 E-value=0.00087 Score=77.57 Aligned_cols=183 Identities=18% Similarity=0.204 Sum_probs=110.5
Q ss_pred CCeEEEEECCCceEEEEeeCCCC--------------------Ce-eEEEEecCCCCEEEEEeCCC--------------
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPP--------------------AS-TFLAFHPQDNNIIAIGTEDS-------------- 868 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~--------------------~i-~~l~~s~~~~~~la~g~~dg-------------- 868 (1101)
+|.+..+|..+|+.+..+..... .+ ...++.+ .+.++++++.++
T Consensus 174 ~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~-~~g~V~vg~~~g~~~~~~~~~~~~~~ 252 (488)
T cd00216 174 RGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDP-KTNLVYVGTGNGSPWNWGGRRTPGDN 252 (488)
T ss_pred CcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeC-CCCEEEEECCCCCCCccCCccCCCCC
Confidence 46677777777777666543211 01 1345554 456777777665
Q ss_pred ----cEEEEEeecceEEEeecc--CCC----CeeEEEEc----CCCC---EEEEEeCCCcEEEEECCCCccccceEEeec
Q 001319 869 ----TIHIYNVRVDEVKSKLKG--HQK----RITGLAFS----TSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIP 931 (1101)
Q Consensus 869 ----~v~iwd~~~~~~~~~~~~--h~~----~V~~l~~s----~d~~---~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~ 931 (1101)
.|.-+|..+|+.+-.++. |.. ......+. -++. .++.++.+|.+...|..+|+.+-.....
T Consensus 253 ~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~-- 330 (488)
T cd00216 253 LYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEV-- 330 (488)
T ss_pred CceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEee--
Confidence 799999999998876542 210 00001111 2333 5778889999999999999876544332
Q ss_pred CCCCCCCcceEEEcCCCCEEEE------------------EeCCeEEEEEcCCceeeeEeccCCCC-C----CCE--EEE
Q 001319 932 AGKTPTGDTRVQFNADQVRMLV------------------VHETQLAIYDASKMERIRQWTPQDAL-S----API--SCA 986 (1101)
Q Consensus 932 ~~~~~~~v~~~~~s~d~~~l~~------------------~~d~~i~v~d~~~~~~~~~~~~~~~h-~----~~v--~~v 986 (1101)
...++.+| +...+. ..++.+.-+|..+|+.+-........ . .+. ..+
T Consensus 331 -------~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~ 402 (488)
T cd00216 331 -------EQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSL 402 (488)
T ss_pred -------ccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcce
Confidence 01122333 211111 12567888888888877666543100 0 111 112
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 987 VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 987 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
. -.+..|++++.||.|+.+|.++|+.+-+..
T Consensus 403 ~--~~g~~v~~g~~dG~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 403 A--TAGNLVFAGAADGYFRAFDATTGKELWKFR 433 (488)
T ss_pred E--ecCCeEEEECCCCeEEEEECCCCceeeEEE
Confidence 2 246789999999999999999999988876
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.02 Score=66.69 Aligned_cols=620 Identities=11% Similarity=0.101 Sum_probs=290.9
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecC-CCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELA-MRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~ 426 (1101)
..-...++|.++ ..|..+|.+...-+. +++......+++ ..-|...-..|+..-++| .|.+|+.
T Consensus 261 ~~~~v~~~~~~y-Ll~d~~G~Lf~l~l~~~~e~~s~~~lkv-------------e~lge~siassi~~L~ng-~lFvGS~ 325 (1096)
T KOG1897|consen 261 CYGRVDLQGSRY-LLGDEDGMLFKLLLSHTGETVSGLDLKV-------------EYLGETSIASSINYLDNG-VLFVGSR 325 (1096)
T ss_pred EcccccCCccEE-EEecCCCcEEEEEeecccccccceEEEE-------------EecCCcchhhhhhcccCc-eEEEecc
Confidence 333456677654 467788887766655 454433211111 133445556666666555 6677877
Q ss_pred CCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCC---CceEEEEec---CCceEEEEE--cCCce--eEEeec
Q 001319 427 KHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPN---KLLCVVTCG---DDKLIKVWE--LSGRK--LFNFEG 492 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~---~~~~l~s~~---~d~~v~iwd--~~~~~--~~~~~~ 492 (1101)
-|.=.+-.+.+.... ..+.++ ..-++|.+++.-... +. -++||+ .||++++.. ..=.. ...+.|
T Consensus 326 ~gdSqLi~L~~e~d~gsy~~ilet~-~NLgPI~Dm~Vvd~d~q~q~-qivtCsGa~kdgSLRiiRngi~I~e~A~i~l~G 403 (1096)
T KOG1897|consen 326 FGDSQLIKLNTEPDVGSYVVILETF-VNLGPIVDMCVVDLDRQGQG-QIVTCSGAFKDGSLRIIRNGIGIDELASIDLPG 403 (1096)
T ss_pred CCceeeEEccccCCCCchhhhhhhc-ccccceeeEEEEeccccCCc-eEEEEeCCCCCCcEEEEecccccceeeEeecCC
Confidence 665555555443222 100111 234578888775543 22 355543 788999987 22222 234444
Q ss_pred CCcCeEEEe--cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEc-cCCCEEEEeecCCCCCceEEEE
Q 001319 493 HEAPVYSIC--PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 493 h~~~v~~v~--~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
-..++.+. +.+..|. +|+.+-.+. -++..+...-......+-......+..| -.|..++-.. ...|+++
T Consensus 404 -ikg~w~lk~~v~~~~d~-ylvlsf~~e-Trvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvT-----s~~iRl~ 475 (1096)
T KOG1897|consen 404 -IKGMWSLKSMVDENYDN-YLVLSFISE-TRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVT-----SNSIRLV 475 (1096)
T ss_pred -ccceeEeeccccccCCc-EEEEEeccc-eEEEEEccceEEeccccccccCceEEEEccCCceEEEEe-----cccEEEE
Confidence 23355555 4444454 444333222 2333332221111111111111122221 1233333222 3346666
Q ss_pred eCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCC------CE
Q 001319 570 NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEG------NL 643 (1101)
Q Consensus 570 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g------~~ 643 (1101)
+-. .....+.... .++....+.+...++.++.++.+...++..+. +.....+.-...|.|+.++|-| ++
T Consensus 476 ss~--~~~~~W~~p~--~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~-l~e~~~~~~e~evaCLDisp~~d~~~~s~~ 550 (1096)
T KOG1897|consen 476 SSA--GLRSEWRPPG--KITIGVVSANASQVVVAGGGLALFYLEIEDGG-LREVSHKEFEYEVACLDISPLGDAPNKSRL 550 (1096)
T ss_pred cch--hhhhcccCCC--ceEEEEEeecceEEEEecCccEEEEEEeeccc-eeeeeeheecceeEEEecccCCCCCCcceE
Confidence 543 2222333222 23334444455577777777777777777665 2222223333478999999842 37
Q ss_pred EEEEEcCCcEEEEEcccccccc--ccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 644 LAVTTADNGFKILANAIGLRSL--RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
+++|..+..+.+.-.-...... ..+... .....+-...+-.|..++..+...+.. +.-..+
T Consensus 551 ~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~---~iPRSIl~~~~e~d~~yLlvalgdG~l--------------~~fv~d 613 (1096)
T KOG1897|consen 551 LAVGLWSDISMILTFLPDLILITHEQLSGE---IIPRSILLTTFEGDIHYLLVALGDGAL--------------LYFVLD 613 (1096)
T ss_pred EEEEeecceEEEEEECCCcceeeeeccCCC---ccchheeeEEeeccceEEEEEcCCceE--------------EEEEEE
Confidence 8888766655544322221111 111111 111112222333333333333222211 111111
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCC
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1101)
......-......-...++.--.|+..++.-+.+.+|.-..+|..+ +.+....+.
T Consensus 614 ~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~vfa~sdrP~viY~~n-----------------------~kLv~spls-- 668 (1096)
T KOG1897|consen 614 INTGQLSDRKKVTLGTQPISLRTFSSKSRTAVFALSDRPTVIYSSN-----------------------GKLVYSPLS-- 668 (1096)
T ss_pred cccceEccccccccCCCCcEEEEEeeCCceEEEEeCCCCEEEEecC-----------------------CcEEEeccc--
Confidence 1111110000001122334444455544444444444444444311 111111100
Q ss_pred CCCCCEe-EEEecCC--CCeEEEEcCCeEEEEECCCceE--EEEeeCCCCCeeEEEEecCCCCEEEEEeC----------
Q 001319 802 NLEEAVP-CIALSKN--DSYVMSATGGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGTE---------- 866 (1101)
Q Consensus 802 ~~~~~v~-~~~~s~d--g~~la~~~dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~---------- 866 (1101)
-..+. .+.|+.+ ...++++..+.+++.-++.-+. ++++.. ......+++.+ ...++++.+.
T Consensus 669 --~kev~~~c~f~s~a~~d~l~~~~~~~l~i~tid~iqkl~irtvpl-~~~prrI~~q~-~sl~~~v~s~r~e~~~~~~~ 744 (1096)
T KOG1897|consen 669 --LKEVNHMCPFNSDAYPDSLASANGGALTIGTIDEIQKLHIRTVPL-GESPRRICYQE-SSLTFGVLSNRIESSAEYYG 744 (1096)
T ss_pred --hHHhhhhcccccccCCceEEEecCCceEEEEecchhhcceeeecC-CCChhheEecc-cceEEEEEecccccchhhcC
Confidence 00111 1122222 3467777777777776653222 233322 23455566655 3344443331
Q ss_pred -CC---cEEEEEeecceEEEeec--cC--CCCeeEEEEcCC-CCEEEEEeC----------CCcEEEEECCCCccccceE
Q 001319 867 -DS---TIHIYNVRVDEVKSKLK--GH--QKRITGLAFSTS-LNILVSSGA----------DAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 867 -dg---~v~iwd~~~~~~~~~~~--~h--~~~V~~l~~s~d-~~~l~s~s~----------Dg~v~lwd~~~~~~~~~~~ 927 (1101)
.. .++++|-++-+.+...+ .. .-.|.++.|..| +.++++|.. .|.|.++.+..+..+....
T Consensus 745 ee~~~s~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~ 824 (1096)
T KOG1897|consen 745 EEYEVSFLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVA 824 (1096)
T ss_pred CcceEEEEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeee
Confidence 11 35556655544433221 11 123555668877 678887753 4778888877733222221
Q ss_pred EeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
-.... +.+ .+...-...++++-+..|++|+..+.+.++.-.. +..++..+...-.|..+++|.-=++|.+-
T Consensus 825 e~~v~----Gav--~aL~~fngkllA~In~~vrLye~t~~~eLr~e~~---~~~~~~aL~l~v~gdeI~VgDlm~Sitll 895 (1096)
T KOG1897|consen 825 ETVVK----GAV--YALVEFNGKLLAGINQSVRLYEWTTERELRIECN---ISNPIIALDLQVKGDEIAVGDLMRSITLL 895 (1096)
T ss_pred eeeec----cce--eehhhhCCeEEEecCcEEEEEEccccceehhhhc---ccCCeEEEEEEecCcEEEEeeccceEEEE
Confidence 11111 122 2333334456666678999999998865554433 37889999999999999999988877765
Q ss_pred eCC--CCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1008 DAD--TLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1008 d~~--~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
..+ .|...-..+ . -++-+.+.+.+-. ++.++-+..+|++++-...
T Consensus 896 ~y~~~eg~f~evAr--D---------~~p~Wmtaveil~--~d~ylgae~~gNlf~v~~d 942 (1096)
T KOG1897|consen 896 QYKGDEGNFEEVAR--D---------YNPNWMTAVEILD--DDTYLGAENSGNLFTVRKD 942 (1096)
T ss_pred EEeccCCceEEeeh--h---------hCccceeeEEEec--CceEEeecccccEEEEEec
Confidence 444 333433222 1 1222444555544 4556666677888776654
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=9.8e-05 Score=83.51 Aligned_cols=204 Identities=13% Similarity=0.159 Sum_probs=131.0
Q ss_pred EEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC-eeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCcccc-
Q 001319 852 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRK- 924 (1101)
Q Consensus 852 ~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~~l~s~s~Dg~-----v~lwd~~~~~~~~- 924 (1101)
+|++ ++..+|.|+.+|.|.+++- .-+.+..++++... |..+-...+..+|++.+.|+. |++|+++..+...
T Consensus 30 c~~s-~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSS-STGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcC-CCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4566 7788999999999988873 34555778888777 555555555578999887764 9999997653222
Q ss_pred ceEE---ee---cCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCC--ceeeeEeccCCCCCCCEEEEEEccCCCEE
Q 001319 925 SVTI---HI---PAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASK--MERIRQWTPQDALSAPISCAVYSCNSQLV 995 (1101)
Q Consensus 925 ~~~~---~~---~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~--~~~~~~~~~~~~h~~~v~~v~~s~dg~~l 995 (1101)
..++ .. ..+..+.+++.++++.+-+.+|+|- +|.|..+.-+- .+-.+....+.+ ..+|+.++|-.|++.+
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~-~~pITgL~~~~d~~s~ 186 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG-KEPITGLALRSDGKSV 186 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC-CCCceeeEEecCCcee
Confidence 1222 11 2222347889999999999999975 88888886431 111122222222 8999999999999984
Q ss_pred EEEeCCCcEEEEeCCCCce-eEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCccc
Q 001319 996 FATFCDGNIGVFDADTLRL-RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWG 1072 (1101)
Q Consensus 996 ~s~~~dg~i~vwd~~~~~~-~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~ 1072 (1101)
+-......|.+|.+..... ...+. .+++...+.++++..+.+++++ +..|.+|+.+..+..|.
T Consensus 187 lFv~Tt~~V~~y~l~gr~p~~~~ld------------~~G~~lnCss~~~~t~qfIca~--~e~l~fY~sd~~~~cfa 250 (933)
T KOG2114|consen 187 LFVATTEQVMLYSLSGRTPSLKVLD------------NNGISLNCSSFSDGTYQFICAG--SEFLYFYDSDGRGPCFA 250 (933)
T ss_pred EEEEecceeEEEEecCCCcceeeec------------cCCccceeeecCCCCccEEEec--CceEEEEcCCCcceeee
Confidence 4444466799999984331 22222 2334445677777323244433 35688888876553333
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.0014 Score=75.78 Aligned_cols=190 Identities=11% Similarity=0.103 Sum_probs=114.6
Q ss_pred EEEecCCceEEEEE-cCCceeEEeecCCc------CeE--EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC
Q 001319 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEA------PVY--SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 468 l~s~~~d~~v~iwd-~~~~~~~~~~~h~~------~v~--~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
++.++.++.|.-.| .+|+.+..+..... .+. .+++ . ++..++.++.++.|..+|.++++.........
T Consensus 64 vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~--~-~~~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~ 140 (488)
T cd00216 64 MYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAY--W-DPRKVFFGTFDGRLVALDAETGKQVWKFGNND 140 (488)
T ss_pred EEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEE--c-cCCeEEEecCCCeEEEEECCCCCEeeeecCCC
Confidence 56667788999999 88888766643322 010 0111 0 22578888899999999999999988776544
Q ss_pred Cc-----e-EEEEEccCCCEEEEeecCC-----CCCceEEEEeCCCCeeEEEecccCC-------------------cce
Q 001319 539 HW-----C-TTMLYSADGSRLFSCGTSK-----DGDSFLVEWNESEGTIKRTYAGFRK-------------------KSN 588 (1101)
Q Consensus 539 ~~-----v-~~~~~s~d~~~l~~~~~~~-----~~~~~i~iwd~~~~~~~~~~~~~~~-------------------~~v 588 (1101)
.. + .+..+. + ..++.++... ..++.+..+|..+|+.+-.+..... ..+
T Consensus 141 ~~~~~~~i~ssP~v~-~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~~v 218 (488)
T cd00216 141 QVPPGYTMTGAPTIV-K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGGTS 218 (488)
T ss_pred CcCcceEecCCCEEE-C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCCCc
Confidence 31 1 112222 2 3444443211 1257899999999998877654211 001
Q ss_pred -EEEEEeCCCCEEEEEeCCC------------------cEEEEECCCCeeeEeeccCCCCC----CCCeeEEe----cCC
Q 001319 589 -GVVQFDTTQNHFLAVGEDS------------------QIKFWDMDNVNILTSTDAEGGLP----NLPRLRFS----KEG 641 (1101)
Q Consensus 589 -~~~~~~~~~~~l~~~~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~----~v~~v~~s----~~g 641 (1101)
...++.+.+..++.++.++ .|.-+|..+|+.........+.. ......+. -+|
T Consensus 219 w~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g 298 (488)
T cd00216 219 WASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDG 298 (488)
T ss_pred cCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCC
Confidence 1245555667888887665 68889999999888775432210 00011111 123
Q ss_pred C---EEEEEEcCCcEEEEEccccc
Q 001319 642 N---LLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 642 ~---~l~~~~~d~~i~iwd~~~~~ 662 (1101)
. .+++++.+|.+...|..++.
T Consensus 299 ~~~~~V~~g~~~G~l~ald~~tG~ 322 (488)
T cd00216 299 KPVPAIVHAPKNGFFYVLDRTTGK 322 (488)
T ss_pred CeeEEEEEECCCceEEEEECCCCc
Confidence 3 56777778888888888773
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00019 Score=81.32 Aligned_cols=202 Identities=16% Similarity=0.212 Sum_probs=137.0
Q ss_pred EecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCC-eeEEEEecCCCCEEEEEeCCCc-----EEEEEeecc-----
Q 001319 811 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTEDST-----IHIYNVRVD----- 878 (1101)
Q Consensus 811 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg~-----v~iwd~~~~----- 878 (1101)
++++.+..+|.|+ +|.|.+++- +.+.++.++.+... |+.+.... +..+|++.++|+. |+||++...
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln~-s~~~~~~fqa~~~siv~~L~~~~-~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILNS-SFQLIRGFQAYEQSIVQFLYILN-KQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEecc-cceeeehheecchhhhhHhhccc-CceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4567888899998 899888874 44555778777777 55555544 5578888887754 899998742
Q ss_pred -eEE--Eeecc-----CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 879 -EVK--SKLKG-----HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 879 -~~~--~~~~~-----h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
+++ ..+.. ...++.+++.+.+-+.+|.|-.+|.|..+.-+--..+.....-...+ ..+|+.+++..|+..
T Consensus 108 P~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~--~~pITgL~~~~d~~s 185 (933)
T KOG2114|consen 108 PQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG--KEPITGLALRSDGKS 185 (933)
T ss_pred cceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC--CCCceeeEEecCCce
Confidence 233 12222 34678999999999999999999999998543322222222112222 278999999999988
Q ss_pred -EEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 951 -MLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 951 -l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
+.++.-..|.+|.+. ++. ......+.|+..+.|..|++....+++++ +..+.+|+.+.......+.
T Consensus 186 ~lFv~Tt~~V~~y~l~-gr~-p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 186 VLFVATTEQVMLYSLS-GRT-PSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred eEEEEecceeEEEEec-CCC-cceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 555778899999998 444 22222334488999999987555355554 4569999988655444443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.19 E-value=5.9e-06 Score=57.38 Aligned_cols=39 Identities=31% Similarity=0.545 Sum_probs=36.9
Q ss_pred ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 835 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 835 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
|+++.++.+|...|.+++|+| ++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~~~-~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAWSP-DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEEET-TSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEEec-ccccceeeCCCCEEEEEC
Confidence 467889999999999999999 899999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.0016 Score=71.70 Aligned_cols=93 Identities=19% Similarity=0.285 Sum_probs=69.7
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceE
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1038 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 1038 (1101)
-.+|+....+.-+.-...-.....|.+.+++|+...|+.|+.||+|.+||...+..... .....++
T Consensus 238 ~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~--------------ka~~~P~ 303 (545)
T PF11768_consen 238 SCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA--------------KAEFIPT 303 (545)
T ss_pred EEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee--------------eecccce
Confidence 45777765543222111112378899999999999999999999999999987633321 1224567
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1039 VVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1039 ~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.++|+| ++.++++|+.-|.+.+||+.-
T Consensus 304 ~iaWHp-~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 304 LIAWHP-DGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred EEEEcC-CCcEEEEEcCCceEEEEEeec
Confidence 899999 799999999999999999843
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00041 Score=77.11 Aligned_cols=282 Identities=16% Similarity=0.114 Sum_probs=158.7
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
+...|.--++...+++++.|++-|.+.+|+-..+ ........ +....+..+.+|++
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~----------------------~~~~~~~~--~~~~~~~~~~vs~~ 87 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG----------------------EMRKLKNE--GATGITCVRSVSSV 87 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch----------------------hhhccccc--CccceEEEEEecch
Confidence 4555666677888999999999999999874322 21111111 13455667788999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEE-----Ee-eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce----EEEee
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMT-----TF-MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE----VKSKL 884 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~-----~~-~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~----~~~~~ 884 (1101)
..++|+|+ .|.|.++-+....... .. ..|+..|++++|++ ++..+.+|..-|+|..-.+++.. ....+
T Consensus 88 e~lvAagt~~g~V~v~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~-~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~i 166 (726)
T KOG3621|consen 88 EYLVAAGTASGRVSVFQLNKELPRDLDYVTPCDKSHKCRVTALEWSK-NGMKLYSGDSQGKVVLTELDSRQAFLSKSQEI 166 (726)
T ss_pred hHhhhhhcCCceEEeehhhccCCCcceeeccccccCCceEEEEEecc-cccEEeecCCCceEEEEEechhhhhcccccee
Confidence 99999888 6888888776532211 11 23678899999999 99999999999999999888721 11222
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC----CCEEEEEeCCeEE
Q 001319 885 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD----QVRMLVVHETQLA 960 (1101)
Q Consensus 885 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~d~~i~ 960 (1101)
..-.+.|..+... ++..|++...-. .+.+.+.+...+. -...... ..-...+|-|. ..-.+.+..-..+
T Consensus 167 l~~ds~IVQlD~~-q~~LLVStl~r~--~Lc~tE~eti~QI---G~k~R~~-~~~~GACF~~g~~~~q~~~IycaRPG~R 239 (726)
T KOG3621|consen 167 LSEDSEIVQLDYL-QSYLLVSTLTRC--ILCQTEAETITQI---GKKPRKS-LIDFGACFFPGQCKAQKPQIYCARPGLR 239 (726)
T ss_pred eccCcceEEeecc-cceehHhhhhhh--heeecchhHHHHh---cCCCcCC-ccccceEEeeccccCCCceEEEecCCCc
Confidence 3345677777765 344555443332 3334433221110 0000000 11233444443 2333333344467
Q ss_pred EEEcC-CceeeeEeccCCC---------------------------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 961 IYDAS-KMERIRQWTPQDA---------------------------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 961 v~d~~-~~~~~~~~~~~~~---------------------------h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
+|..+ .|+.+.+....+. |-+-..+... .++ .+++-++-| |+|+|..+.
T Consensus 240 lWead~~G~V~~Thqfk~ala~~p~p~i~~~s~esp~~~~~~~~~q~ls~~k~~~l-~~~-~vLa~te~G-iyv~d~~~~ 316 (726)
T KOG3621|consen 240 LWEADFAGEVIKTHQFKDALARPPAPEIPIRSLESPNQRSLPSGTQHLSLSKSSTL-HSD-RVLAWTEVG-IYVFDSNNS 316 (726)
T ss_pred eEEeecceeEEEeeehhhhhccCCCCcccCCCcCCccccCCCCCccccccceeEEe-ecc-eEEEeecce-EEEEEeccc
Confidence 77765 3554444322110 1111111111 222 344444344 999999888
Q ss_pred ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1013 RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
...+.... .+.+ ..++- .++-|+.-..||.+++..+.+.+
T Consensus 317 ~v~l~se~-----------~~DI--~dVs~---~~neiFvL~~d~~l~~~sv~s~q 356 (726)
T KOG3621|consen 317 QVYLWSEG-----------GHDI--LDVSH---CGNEIFVLNLDRGLKVESVASRQ 356 (726)
T ss_pred eEEEeecC-----------CCce--eEEee---cCceEEEEecCCceeEEEeehhH
Confidence 77776542 3333 23331 35556666677888888876655
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.007 Score=64.56 Aligned_cols=278 Identities=14% Similarity=0.118 Sum_probs=135.4
Q ss_pred EEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCccccccccccCC-ccEEEEEEccCCCEEEEEECC
Q 001319 351 DFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~las~~~d 427 (1101)
+|.+||++||..+..|| .+.+.|+.+++... |.... .......++|+++.++-....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~Q--------------------LTdg~g~~~~g~~~s~~~~~~~Yv~~~ 101 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQ--------------------LTDGPGDNTFGGFLSPDDRALYYVKNG 101 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE-----------------------SS-B-TTT-EE-TTSSEEEEEETT
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEE--------------------CccCCCCCccceEEecCCCeEEEEECC
Confidence 57899998888777666 55666777776543 22221 222246778999988777667
Q ss_pred CeEEEEeecCCcccccceeeecccCcEEEEEEec--CCCceEEEEec---C-------------------CceEEEEE-c
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCG---D-------------------DKLIKVWE-L 482 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~---~-------------------d~~v~iwd-~ 482 (1101)
..|+-.|+++.+... .+.-..+.+-...|.. |+. .++-.- . .+.|.--| .
T Consensus 102 ~~l~~vdL~T~e~~~---vy~~p~~~~g~gt~v~n~d~t--~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~ 176 (386)
T PF14583_consen 102 RSLRRVDLDTLEERV---VYEVPDDWKGYGTWVANSDCT--KLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLK 176 (386)
T ss_dssp TEEEEEETTT--EEE---EEE--TTEEEEEEEEE-TTSS--EEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETT
T ss_pred CeEEEEECCcCcEEE---EEECCcccccccceeeCCCcc--EEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECC
Confidence 789999999976432 3444555555566643 444 332211 1 11233334 3
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEecc---CC-eEEEEecCCCCeee-eccC--CCCceEEEEEccCCCEEEE
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DG-KIKAWLYDTMGSRV-DYDA--PGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---d~-~i~~wd~~~~~~~~-~~~~--~~~~v~~~~~s~d~~~l~~ 555 (1101)
+|+ ...+..-...+..+.|+|... .+|.-|-+ +. .-|||-+++..... .+.. ....+..=-|.|||..+..
T Consensus 177 tG~-~~~v~~~~~wlgH~~fsP~dp-~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y 254 (386)
T PF14583_consen 177 TGE-RKVVFEDTDWLGHVQFSPTDP-TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWY 254 (386)
T ss_dssp T---EEEEEEESS-EEEEEEETTEE-EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEE
T ss_pred CCc-eeEEEecCccccCcccCCCCC-CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEE
Confidence 333 333333455677788887643 34444332 22 23677665543322 2211 2234555678999998876
Q ss_pred eec-CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCe
Q 001319 556 CGT-SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVN 618 (1101)
Q Consensus 556 ~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~ 618 (1101)
.+. .+..+..|.-+|+.+++........ ...-.-.++||+.++-=|.| .-|+++++..+.
T Consensus 255 ~~~~~~~~~~~i~~~d~~t~~~~~~~~~p---~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~ 331 (386)
T PF14583_consen 255 DSYTPGGQDFWIAGYDPDTGERRRLMEMP---WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGR 331 (386)
T ss_dssp EEEETTT--EEEEEE-TTT--EEEEEEE----SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTE
T ss_pred EeecCCCCceEEEeeCCCCCCceEEEeCC---ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCc
Confidence 544 2333567888899888654433321 23345567888777662322 256778887766
Q ss_pred eeEeeccC-------C-CCCCCCeeEEecCCCEEEEEEc-CCcEEEEEc
Q 001319 619 ILTSTDAE-------G-GLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1101)
Q Consensus 619 ~~~~~~~~-------~-~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~ 658 (1101)
........ + ....=....|+|||+.++..+. .|...||-+
T Consensus 332 ~~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v 380 (386)
T PF14583_consen 332 FRKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV 380 (386)
T ss_dssp EEEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred eeeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence 53222110 0 0011256899999998877664 666666644
|
|
| >PF08513 LisH: LisH; InterPro: IPR013720 The LisH motif is found in a large number of eukaryotic proteins, from metazoa, fungi and plants that have a wide range of functions | Back alignment and domain information |
|---|
Probab=98.07 E-value=6.2e-06 Score=50.47 Aligned_cols=27 Identities=37% Similarity=0.572 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHhc
Q 001319 6 RELVFLILQFLEEEKFKESVHKLEKES 32 (1101)
Q Consensus 6 ~e~~~li~q~L~~~g~~~s~~~L~~Es 32 (1101)
+++.+||++||.+.||.+||.+|.+||
T Consensus 1 ~~Ln~lI~~YL~~~Gy~~tA~~f~~Ea 27 (27)
T PF08513_consen 1 EELNQLIYDYLVENGYKETAKAFAKEA 27 (27)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHCCcHHHHHHHHhcC
Confidence 589999999999999999999999996
|
The recently solved structure of the LisH domain in the N-terminal region of LIS1 depicted it as a novel dimerization motif, and that other structural elements are likely to play an important role in dimerisation [, , ]. The LisH (lis homology) domain mediates protein dimerisation and tetramerisation. The LisH domain is found in Sif2, a component of the Set3 complex which is responsible for repressing meiotic genes. It has been shown that the LisH domain helps mediate interaction with components of the Set3 complex []. ; PDB: 2XTE_L 2XTC_B 2XTD_A 1UUJ_B. |
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00026 Score=79.67 Aligned_cols=178 Identities=12% Similarity=0.148 Sum_probs=121.4
Q ss_pred cccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeE
Q 001319 749 AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKI 827 (1101)
Q Consensus 749 ~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i 827 (1101)
++.++.++.+|.+.+.+.+... ...+ .|... ..+|.++++++ ||+|
T Consensus 49 ~~~~~~GtH~g~v~~~~~~~~~------------------------~~~~---~~s~~------~~~Gey~asCS~DGkv 95 (846)
T KOG2066|consen 49 DKFFALGTHRGAVYLTTCQGNP------------------------KTNF---DHSSS------ILEGEYVASCSDDGKV 95 (846)
T ss_pred cceeeeccccceEEEEecCCcc------------------------cccc---ccccc------ccCCceEEEecCCCcE
Confidence 4568888889999988754321 0000 02211 56899999999 8999
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEecC----CCCEEEEEeCCCcEEEEEeec--ceEEEeeccCCCCeeEEEEcCCCC
Q 001319 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRV--DEVKSKLKGHQKRITGLAFSTSLN 901 (1101)
Q Consensus 828 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~----~~~~la~g~~dg~v~iwd~~~--~~~~~~~~~h~~~V~~l~~s~d~~ 901 (1101)
.|..+-+.+...++.- ..++.+++++|+ ..+.+++|+.-| +.++.-.- .+.-..+..-.++|.++.|. |+
T Consensus 96 ~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~ 171 (846)
T KOG2066|consen 96 VIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GN 171 (846)
T ss_pred EEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--Cc
Confidence 9998888777666553 567999999993 256788999888 88776431 11111345567899999996 77
Q ss_pred EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 902 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 902 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
++|-++.+| |+|||+.+++.+..................+.|.++.+ |++|-..+|+|..+.
T Consensus 172 lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~-LVIGW~d~v~i~~I~ 233 (846)
T KOG2066|consen 172 LIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDR-LVIGWGDSVKICSIK 233 (846)
T ss_pred EEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCe-EEEecCCeEEEEEEe
Confidence 888888888 99999999876654433332222224455677777665 566666778888877
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0041 Score=71.06 Aligned_cols=250 Identities=13% Similarity=0.071 Sum_probs=136.6
Q ss_pred cEEEEEEecCCceEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+..+++||||++++.+-+..| .|++.|+.+|+.+.. . +.. ..-..+.|.+|++.|
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d-~-----------------i~~--~~~~~~~W~~d~~~~ 184 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPD-G-----------------IEN--PKFSSVSWSDDGKGF 184 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEE-E-----------------EEE--EESEEEEECTTSSEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCC-c-----------------ccc--cccceEEEeCCCCEE
Confidence 4557889999997765544444 699999999976542 0 111 122249999999988
Q ss_pred EEEECCC-----------eEEEEeecCCcccccceeeecccCc--EEEEEEecCCCceEEEEecC-C-ceEEEEE-cCC-
Q 001319 422 GVAFTKH-----------LIQLYSYAGSNDLRQHSQIDAHVGA--VNDLAFAYPNKLLCVVTCGD-D-KLIKVWE-LSG- 484 (1101)
Q Consensus 422 as~~~d~-----------~i~vwd~~~~~~~~~~~~l~~h~~~--V~~l~~s~d~~~~~l~s~~~-d-~~v~iwd-~~~- 484 (1101)
+....+. .|+.|++.++..-.. ..+.+.... ...+..++|++++++.+.+. + ..+.+-| ..+
T Consensus 185 ~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~-lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~ 263 (414)
T PF02897_consen 185 FYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDE-LVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG 263 (414)
T ss_dssp EEEECSTTTSS-CCGCCEEEEEEETTS-GGG-E-EEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT
T ss_pred EEEEeCcccccccCCCCcEEEEEECCCChHhCe-eEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC
Confidence 7765333 377777766543211 133333332 67889999999643333332 2 3577777 332
Q ss_pred ---ceeEEeecCCcCeE-EEecccCCCccEEEEec---cCCeEEEEecCCCCe---eeeccCCCCceEEEEEccCCCEEE
Q 001319 485 ---RKLFNFEGHEAPVY-SICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 485 ---~~~~~~~~h~~~v~-~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l~ 554 (1101)
.....+......+. .+... ++.+++... ..+.|...++..... ...+..+...+.--.+...+.+|+
T Consensus 264 ~~~~~~~~l~~~~~~~~~~v~~~---~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lv 340 (414)
T PF02897_consen 264 SPDAKPKLLSPREDGVEYYVDHH---GDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLV 340 (414)
T ss_dssp TSS-SEEEEEESSSS-EEEEEEE---TTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEE
T ss_pred CCcCCcEEEeCCCCceEEEEEcc---CCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEE
Confidence 23444443333333 33322 223433332 235676677776653 223334444333333334556666
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEE--Ee--CCCcEEEEECCCCeee
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA--VG--EDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~--~~--~dg~i~iwd~~~~~~~ 620 (1101)
.... .++...|+++++..+.............+..+...++++.+.. .+ .-++++.||+.+++..
T Consensus 341 l~~~-~~~~~~l~v~~~~~~~~~~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 341 LSYR-ENGSSRLRVYDLDDGKESREIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp EEEE-ETTEEEEEEEETT-TEEEEEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred EEEE-ECCccEEEEEECCCCcEEeeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 5543 4567789999999555555555444434555555566655444 22 4567888999888754
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.00094 Score=74.60 Aligned_cols=222 Identities=12% Similarity=0.111 Sum_probs=121.2
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+.........+.++|+|++++++ .||.-.|+..... +. ...+.-...+|.+.++ +|+-...++|.|+.
T Consensus 28 lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~---r~-----k~~G~g~~~vw~~~n~---yAv~~~~~~I~I~k 95 (443)
T PF04053_consen 28 LGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAW---RN-----KAFGSGLSFVWSSRNR---YAVLESSSTIKIYK 95 (443)
T ss_dssp EEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTT---EE-----EEEEE-SEEEE-TSSE---EEEE-TTS-EEEEE
T ss_pred CCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCC---cc-----cccCceeEEEEecCcc---EEEEECCCeEEEEE
Confidence 44455668899999999999995 5677777773322 21 1234456789999665 56666688999986
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+......+... ..+..+-. |.+|...+ ++.|.+||+.+......+... .|..+.|+++|.+++..+
T Consensus 96 n~~~~~~k~i~~~-~~~~~If~-----G~LL~~~~-~~~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t--- 163 (443)
T PF04053_consen 96 NFKNEVVKSIKLP-FSVEKIFG-----GNLLGVKS-SDFICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVT--- 163 (443)
T ss_dssp TTEE-TT-----S-S-EEEEE------SSSEEEEE-TTEEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE----
T ss_pred cCccccceEEcCC-cccceEEc-----CcEEEEEC-CCCEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEe---
Confidence 544443344321 23454432 45665554 448999999999888887755 389999999999999887
Q ss_pred CCCceEEEEeCCCC--------------eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC
Q 001319 561 DGDSFLVEWNESEG--------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~--------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
+..+.+++.... ..+..+. ..|.+.+|..+ .++-.... .++. +-.|+........
T Consensus 164 --~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~----~~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~~~i~~ld 232 (443)
T PF04053_consen 164 --KDSIYILKYNLEAVAAIPEEGVEDAFELIHEIS----ERIKSGCWVED--CFIYTTSN-HLKY--LVNGETGIIAHLD 232 (443)
T ss_dssp --S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TT-EEEE--EETTEEEEEEE-S
T ss_pred --CCeEEEEEecchhcccccccCchhceEEEEEec----ceeEEEEEEcC--EEEEEcCC-eEEE--EEcCCcceEEEcC
Confidence 446776654332 2222221 25777788765 44444444 6665 3344432222211
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.++.-+.+.+..+.+.....++.+..+.+...
T Consensus 233 ---~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~~ 264 (443)
T PF04053_consen 233 ---KPLYLLGYLPKENRLYLIDRDGNVISYELDLS 264 (443)
T ss_dssp ---S--EEEEEETTTTEEEEE-TT--EEEEE--HH
T ss_pred ---CceEEEEEEccCCEEEEEECCCCEEEEEECHH
Confidence 14677788887788999999999988877644
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=98.00 E-value=8e-05 Score=81.51 Aligned_cols=84 Identities=27% Similarity=0.399 Sum_probs=68.7
Q ss_pred CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
+.+.....+.....|.|++++|+... ++.|+.||.|++||...+... +..+.-..+.+
T Consensus 248 lqrvsvtsipL~s~v~~ca~sp~E~k-LvlGC~DgSiiLyD~~~~~t~---------------------~~ka~~~P~~i 305 (545)
T PF11768_consen 248 LQRVSVTSIPLPSQVICCARSPSEDK-LVLGCEDGSIILYDTTRGVTL---------------------LAKAEFIPTLI 305 (545)
T ss_pred eeEEEEEEEecCCcceEEecCcccce-EEEEecCCeEEEEEcCCCeee---------------------eeeecccceEE
Confidence 33444566789999999999999985 578999999999998776432 22345568899
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCC
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~ 438 (1101)
+|+|+|..+++|+..|.+.+||+.-+
T Consensus 306 aWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 306 AWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99999999999999999999999754
|
|
| >smart00668 CTLH C-terminal to LisH motif | Back alignment and domain information |
|---|
Probab=97.97 E-value=5.5e-06 Score=63.62 Aligned_cols=52 Identities=37% Similarity=0.523 Sum_probs=43.5
Q ss_pred HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHHHHHHhHHHHHHccCCH
Q 001319 38 MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFFEIRKQKYLEALDRQDK 90 (1101)
Q Consensus 38 ~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~~i~~~~~lell~~~~~ 90 (1101)
+..++++|+.|+|+.|++.+....+......+. +.|.|++|+|+||++.++.
T Consensus 5 ~~~i~~~i~~g~~~~a~~~~~~~~~~l~~~~~~-l~f~L~~q~~lell~~~~~ 56 (58)
T smart00668 5 RKRIRELILKGDWDEALEWLSSLKPPLLERNSK-LEFELRKQKFLELVRQGKL 56 (58)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHcCHHHhccCCC-chhHHHHHHHHHHHHcCCc
Confidence 678999999999999999999985544333333 9999999999999998764
|
Alpha-helical motif of unknown function. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0051 Score=69.02 Aligned_cols=199 Identities=15% Similarity=0.130 Sum_probs=108.2
Q ss_pred EEecCCCCeEEEEcCC------------eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 810 IALSKNDSYVMSATGG------------KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 810 ~~~s~dg~~la~~~dg------------~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
++.+|.|..+|...+. .|.+|+. .|+.+..+.-..+.|.++.|+. +.. |++...||.+++||+..
T Consensus 34 va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~-sG~ll~~i~w~~~~iv~~~wt~-~e~-LvvV~~dG~v~vy~~~G 110 (410)
T PF04841_consen 34 VAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSS-SGKLLSSIPWDSGRIVGMGWTD-DEE-LVVVQSDGTVRVYDLFG 110 (410)
T ss_pred EEEcCCCceEEEEecCcccccccCCCCcEEEEECC-CCCEeEEEEECCCCEEEEEECC-CCe-EEEEEcCCEEEEEeCCC
Confidence 4556666666665433 5899987 4666666665558999999987 544 55667899999999863
Q ss_pred ce------EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCC----CCCCCcce-EEEcC
Q 001319 878 DE------VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG----KTPTGDTR-VQFNA 946 (1101)
Q Consensus 878 ~~------~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~----~~~~~v~~-~~~s~ 946 (1101)
.. .+....-....+....+...| ++.-..++.+.+-+-.............+.. +....... ..++.
T Consensus 111 ~~~fsl~~~i~~~~v~e~~i~~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~ 188 (410)
T PF04841_consen 111 EFQFSLGEEIEEEKVLECRIFAIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSS 188 (410)
T ss_pred ceeechhhhccccCcccccccccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeec
Confidence 32 111111122233333444455 2323334444433222211110000000000 00001111 23444
Q ss_pred CCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 947 DQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 947 d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+....+. ..++.+.+.+....+. +.. .+++..+++||+|++||.-..+|.+.|...+-.+..+.+..
T Consensus 189 ~~~~~i~~~~g~~i~~i~~~~~~~---i~~----~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~ 256 (410)
T PF04841_consen 189 DRVVEILLANGETIYIIDENSFKQ---IDS----DGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDT 256 (410)
T ss_pred CcceEEEEecCCEEEEEEcccccc---ccC----CCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeec
Confidence 4443333 3344555444332211 111 46899999999999999999999999998877777776663
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00016 Score=82.21 Aligned_cols=182 Identities=8% Similarity=0.079 Sum_probs=129.0
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
++..+..|+....+..+|+.+++..+. ..--.+.|.-+. .+++ ++.+|...|+|.+-| .+-+.++++..|++
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~---~~v~a~~v~imR--~Nnr--~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRT---TNVSASGVTIMR--YNNR--NLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeee---eeccCCceEEEE--ecCc--EEEeecccceEEeecCCcCceeeeeecccc
Confidence 455677787778899999999876652 222333354444 3567 799999999999999 88899999999999
Q ss_pred CeEEEecccCCCccEEEEecc---------CCeEEEEecCCCCeeeeccCCCCceEEEEEccCC-CEEEEeecCCCCCce
Q 001319 496 PVYSICPHHKENIQFIFSTAI---------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSF 565 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~---------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~ 565 (1101)
.|..+.. .|+.|++++. |.-|+|||++....+..+..+.++ .-+.|.|.- ..+++++. .|.
T Consensus 219 siSDfDv----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~----sGq 289 (1118)
T KOG1275|consen 219 SISDFDV----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQ----SGQ 289 (1118)
T ss_pred ceeeeec----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc-hhhhhcccccceEEEEec----ccc
Confidence 9999876 4568888875 556899999988776655554442 445566643 34555543 677
Q ss_pred EEEEeC---CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 566 LVEWNE---SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 566 i~iwd~---~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
..+-|. .....-..+....+..+..+.++++++.++.|..+|.|.+|.-
T Consensus 290 ~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 290 FQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred eeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 888873 2221111122222224888999999999999999999999973
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.0032 Score=69.40 Aligned_cols=252 Identities=15% Similarity=0.208 Sum_probs=132.9
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceec------c------------ccceeecccccCcc------ccccc
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLV------S------------KPFKIWDMAACSLP------FQASI 401 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~------~------------~~~~~~d~~~~~~~------~~~~~ 401 (1101)
.|++|.|+++..- ||+|...|.|.||.+...+.-. . .+-++-|+.....+ .+...
T Consensus 3 ~v~~vs~a~~t~E-lav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPETLE-LAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTTTE-EEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCCce-EEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 6899999999764 5889999999999987653321 0 01223343332221 22234
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeec------ccCcEEEEEEec-----CC-CceEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAY-----PN-KLLCVV 469 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~------h~~~V~~l~~s~-----d~-~~~~l~ 469 (1101)
+....++|++++.| |=.++|+|..+|.+.|.|+.+...+... .+.. ....|+++.|+- |+ ..+.++
T Consensus 82 ~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~-~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 82 LDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNE-NIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp E---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEE-EGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeec-cccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 55568999999998 6779999999999999999876654431 1222 344688888873 22 225788
Q ss_pred EecCCceEEEEE-c-C--Ccee----EEeecCCcCeEEEecccCCCc-------------------cEEEEeccCCeEEE
Q 001319 470 TCGDDKLIKVWE-L-S--GRKL----FNFEGHEAPVYSICPHHKENI-------------------QFIFSTAIDGKIKA 522 (1101)
Q Consensus 470 s~~~d~~v~iwd-~-~--~~~~----~~~~~h~~~v~~v~~~~~~~~-------------------~~l~s~~~d~~i~~ 522 (1101)
.|...|.+.+|. . . +.-. .....+.++|..|..-...+| .-++....+..+|+
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 899999999998 3 2 2211 112246667666653211111 12334445788999
Q ss_pred EecCCCCeeeeccCCCCceEEEEEc-----cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC---cceEEEEEe
Q 001319 523 WLYDTMGSRVDYDAPGHWCTTMLYS-----ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFD 594 (1101)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s-----~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~ 594 (1101)
+...+.+...+..........+++- ..+..|++.. .+|.++++.+..-+.+..+..... ......+++
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~----~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis 315 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLF----NNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSIS 315 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEE----TTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEE----CCCcEEEEECCCchHhhcccCCCccccccccccEEC
Confidence 9888776665544222334444553 2444555554 388999999998888777665321 123335667
Q ss_pred CCCCEEEEEe
Q 001319 595 TTQNHFLAVG 604 (1101)
Q Consensus 595 ~~~~~l~~~~ 604 (1101)
++|..++-.+
T Consensus 316 ~~Gdi~~~~g 325 (395)
T PF08596_consen 316 RNGDIFYWTG 325 (395)
T ss_dssp TTS-EEEE-S
T ss_pred CCCCEEEEeC
Confidence 7776555443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.91 E-value=0.00061 Score=75.83 Aligned_cols=188 Identities=15% Similarity=0.148 Sum_probs=114.9
Q ss_pred CCCcEEEEEEecCCceEEEEEecc---CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSN---GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d---~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
-...+..-+|+|+++.+....-.. ..+.++++++++..... ...+.-..-+|||||+
T Consensus 191 ~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~--------------------~~~g~~~~P~fspDG~ 250 (425)
T COG0823 191 SGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVIL--------------------NFNGNNGAPAFSPDGS 250 (425)
T ss_pred cCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceee--------------------ccCCccCCccCCCCCC
Confidence 456788889999998754443222 35999999988754421 1233445678999999
Q ss_pred EEEEEE-CCCe--EEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE--EcCCceeEEeecCC
Q 001319 420 YVGVAF-TKHL--IQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW--ELSGRKLFNFEGHE 494 (1101)
Q Consensus 420 ~las~~-~d~~--i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw--d~~~~~~~~~~~h~ 494 (1101)
+||.+. .||. |.+.|+.++...+ +..-.+.-..=.|+|||++ ++++.+..|.-.|| |.+|.....+....
T Consensus 251 ~l~f~~~rdg~~~iy~~dl~~~~~~~----Lt~~~gi~~~Ps~spdG~~-ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~ 325 (425)
T COG0823 251 KLAFSSSRDGSPDIYLMDLDGKNLPR----LTNGFGINTSPSWSPDGSK-IVFTSDRGGRPQIYLYDLEGSQVTRLTFSG 325 (425)
T ss_pred EEEEEECCCCCccEEEEcCCCCccee----cccCCccccCccCCCCCCE-EEEEeCCCCCcceEEECCCCCceeEeeccC
Confidence 998764 4554 6677777766322 4333443447789999997 44455566654554 46666655554433
Q ss_pred cCeEEEecccCCCccEEEEeccC-Ce--EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 495 APVYSICPHHKENIQFIFSTAID-GK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d-~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+.-..-.|+| ||++++..+.. |. |.+.|+.++.. ..............+.++|+.+...+.
T Consensus 326 ~~~~~p~~Sp--dG~~i~~~~~~~g~~~i~~~~~~~~~~-~~~lt~~~~~e~ps~~~ng~~i~~~s~ 389 (425)
T COG0823 326 GGNSNPVWSP--DGDKIVFESSSGGQWDIDKNDLASGGK-IRILTSTYLNESPSWAPNGRMIMFSSG 389 (425)
T ss_pred CCCcCccCCC--CCCEEEEEeccCCceeeEEeccCCCCc-EEEccccccCCCCCcCCCCceEEEecc
Confidence 3333444555 67777766643 44 55566655543 222222333445678888888877653
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.036 Score=64.45 Aligned_cols=111 Identities=11% Similarity=0.042 Sum_probs=66.2
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCC-ceE----------EEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-WCT----------TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-~v~----------~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
..++.++.++.|.-.|..+++.+..+..... .+. .+++. +..++.+.. ++.|.-.|..+|+.+
T Consensus 70 g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~~~v~v~t~----dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 70 GVMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALY--DGKVFFGTL----DARLVALDAKTGKVV 143 (527)
T ss_pred CEEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceEE--CCEEEEEcC----CCEEEEEECCCCCEE
Confidence 3666777788888888888888776553221 111 12221 234444443 788999999999988
Q ss_pred EEecccCCcceEEEEEeC--CCCEEEEEe------CCCcEEEEECCCCeeeEeecc
Q 001319 578 RTYAGFRKKSNGVVQFDT--TQNHFLAVG------EDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~--~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
-.........-..+.-+| .+..++++. .+|.|+-+|.++|+.+..+..
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~ 199 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYT 199 (527)
T ss_pred eecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEeccC
Confidence 766532110000111111 133555543 268999999999999877643
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.037 Score=64.35 Aligned_cols=148 Identities=11% Similarity=0.091 Sum_probs=89.5
Q ss_pred cEEEEEeecceEEEeeccCCCCee---------EEEEcCCCC---EEEEEeCCCcEEEEECCCCccccceEE--------
Q 001319 869 TIHIYNVRVDEVKSKLKGHQKRIT---------GLAFSTSLN---ILVSSGADAQLCVWSIDTWEKRKSVTI-------- 928 (1101)
Q Consensus 869 ~v~iwd~~~~~~~~~~~~h~~~V~---------~l~~s~d~~---~l~s~s~Dg~v~lwd~~~~~~~~~~~~-------- 928 (1101)
+|.-.|+++|+..-.++.....+. -+.+..+|+ .++.+..+|.+.+.|-.+|+.+.....
T Consensus 272 s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~ 351 (527)
T TIGR03075 272 SIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLSAEPFVDTVNWAT 351 (527)
T ss_pred eEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceeccccccCCccccc
Confidence 677788889988876654322222 122334665 788999999999999999986421100
Q ss_pred --eecCCCC--------------------C-----CCcceEEEcCCCCEEEEE-e-------------------------
Q 001319 929 --HIPAGKT--------------------P-----TGDTRVQFNADQVRMLVV-H------------------------- 955 (1101)
Q Consensus 929 --~~~~~~~--------------------~-----~~v~~~~~s~d~~~l~~~-~------------------------- 955 (1101)
....+.. + ..-..++++|+..++.+. .
T Consensus 352 ~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~ 431 (527)
T TIGR03075 352 GVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKTGLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLT 431 (527)
T ss_pred ccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCCCEEEEecccccccccccccccCCCCceeccccc
Confidence 0000000 0 001235667766655541 1
Q ss_pred --------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 956 --------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 956 --------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
-+.|.-+|+.+++..-....... ..... +.-.|.+++.++.||.++.+|.++|+.+-....
T Consensus 432 ~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p---~~~~~-l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 432 IKPPPDDHMGSLIAWDPITGKIVWEHKEDFP---LWGGV-LATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred cCCCCCCCceeEEEEeCCCCceeeEecCCCC---CCCcc-eEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 13577788888887766554211 11111 122456777888899999999999999988764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0026 Score=70.09 Aligned_cols=247 Identities=14% Similarity=0.169 Sum_probs=130.1
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC-CCCeee-----------ecccccccc--------CCccceeecc
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATA-----------SAVPQHWLP--------SSGLLMANDV 798 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~-~~~~~~-----------~~~~~~~~~--------~~~~~~~~~~ 798 (1101)
.|+.+.|.++...++++...|.|.+|.+..++... ...... .....+-|+ ..|......+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 47889999998889999999999999998765443 110000 001111111 1122222222
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEee--C------CCCCeeEEEEec----CCC---CEEE
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFM--S------PPPASTFLAFHP----QDN---NIIA 862 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~--~------~~~~i~~l~~s~----~~~---~~la 862 (1101)
. ...++|++++.| |=-++|+|. +|.+.|.|++....+..-. . ....++++.|+- +|+ -+|+
T Consensus 83 ~--~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 D--AKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp -----S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred e--ccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 2 257899999997 666889998 8999999998777665522 2 223588888863 233 4788
Q ss_pred EEeCCCcEEEEEeec---ceEE----EeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE--E-eecC
Q 001319 863 IGTEDSTIHIYNVRV---DEVK----SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT--I-HIPA 932 (1101)
Q Consensus 863 ~g~~dg~v~iwd~~~---~~~~----~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~--~-~~~~ 932 (1101)
+|+..|.+.+|.+.- +... .....+.++|..+. ..+.++++...... + ....
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~------------------~i~~~~G~~a~At~~~~~~l~~ 221 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSII------------------PINADTGESALATISAMQGLSK 221 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEE------------------EEETTT--B-B-BHHHHHGGGG
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEE------------------EEECCCCCcccCchhHhhcccc
Confidence 999999999998751 1111 11112333333322 22333332111000 0 0000
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEc-----cCCCEEEEEeCCCcEEEE
Q 001319 933 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS-----CNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 933 ~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s-----~dg~~l~s~~~dg~i~vw 1007 (1101)
+ . +...+++++++..++++...+.+........ ......+.+- ..+..|++-..+|.|++|
T Consensus 222 g---~--------~i~g~vVvvSe~~irv~~~~~~k~~~K~~~~---~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~ 287 (395)
T PF08596_consen 222 G---I--------SIPGYVVVVSESDIRVFKPPKSKGAHKSFDD---PFLCSSASVVPTISRNGGYCLVCLFNNGSIRIY 287 (395)
T ss_dssp T---------------EEEEEE-SSEEEEE-TT---EEEEE-SS----EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEE
T ss_pred C---C--------CcCcEEEEEcccceEEEeCCCCcccceeecc---ccccceEEEEeecccCCceEEEEEECCCcEEEE
Confidence 0 0 0122566688999999999888776554421 2334444452 356678888899999999
Q ss_pred eCCCCceeEeeCC
Q 001319 1008 DADTLRLRCYIAP 1020 (1101)
Q Consensus 1008 d~~~~~~~~~~~~ 1020 (1101)
.+...+.+.....
T Consensus 288 SLP~Lkei~~~~l 300 (395)
T PF08596_consen 288 SLPSLKEIKSVSL 300 (395)
T ss_dssp ETTT--EEEEEE-
T ss_pred ECCCchHhhcccC
Confidence 9999999988774
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.0017 Score=72.56 Aligned_cols=223 Identities=12% Similarity=0.115 Sum_probs=118.7
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
......+.++|+|+.+++ ..+|...++..... .. ...+....++|.+++
T Consensus 32 ~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~-------------------------r~-----k~~G~g~~~vw~~~n 80 (443)
T PF04053_consen 32 EIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAW-------------------------RN-----KAFGSGLSFVWSSRN 80 (443)
T ss_dssp SS--SEEEE-TTSSEEEE-EETTEEEEEETTTT-------------------------EE-----EEEEE-SEEEE-TSS
T ss_pred CcCCeeEEECCCCCEEEE-EcCCEEEEEEccCC-------------------------cc-----cccCceeEEEEecCc
Confidence 344678999999997777 66777777751100 00 023345668888877
Q ss_pred CeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEE
Q 001319 817 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 896 (1101)
Q Consensus 817 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 896 (1101)
++.+.-..++|.++.--+.+....+... ..+..+-. |.+|+..+.+ .|.+||+.+++.++++... +|..+.|
T Consensus 81 ~yAv~~~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~----G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~W 152 (443)
T PF04053_consen 81 RYAVLESSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG----GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIW 152 (443)
T ss_dssp EEEEE-TTS-EEEEETTEE-TT-----S-S-EEEEE-----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE
T ss_pred cEEEEECCCeEEEEEcCccccceEEcCC-cccceEEc----CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEE
Confidence 6555555788999632222222233221 12333322 6777776644 8999999999999998743 4899999
Q ss_pred cCCCCEEEEEeCCCcEEEEECCCC---------ccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCc
Q 001319 897 STSLNILVSSGADAQLCVWSIDTW---------EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 967 (1101)
Q Consensus 897 s~d~~~l~s~s~Dg~v~lwd~~~~---------~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 967 (1101)
+++|.+++-.+.+ ++.+++.... -......++.. ...|.+.+|..| .++.....+++.+--...
T Consensus 153 s~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~E~----~~~IkSg~W~~d--~fiYtT~~~lkYl~~Ge~ 225 (443)
T PF04053_consen 153 SDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIHEI----SERIKSGCWVED--CFIYTTSNHLKYLVNGET 225 (443)
T ss_dssp -TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-----S--SEEEEETT--EEEEE-TTEEEEEETTEE
T ss_pred ECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEEEe----cceeEEEEEEcC--EEEEEcCCeEEEEEcCCc
Confidence 9999999988866 5888776543 00011111110 157888999887 444444447776333222
Q ss_pred eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 968 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 968 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
..+..+ ..++.-+.+.+....|.....|+.|..+.++.
T Consensus 226 ~~i~~l------d~~~yllgy~~~~~~ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 226 GIIAHL------DKPLYLLGYLPKENRLYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEEE-------SS--EEEEEETTTTEEEEE-TT--EEEEE--H
T ss_pred ceEEEc------CCceEEEEEEccCCEEEEEECCCCEEEEEECH
Confidence 333333 45677788888778888888999998887764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >smart00667 LisH Lissencephaly type-1-like homology motif | Back alignment and domain information |
|---|
Probab=97.83 E-value=2.8e-05 Score=51.90 Aligned_cols=32 Identities=38% Similarity=0.546 Sum_probs=29.7
Q ss_pred chHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001319 4 LSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1101)
Q Consensus 4 ~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1101)
-++++.++|+|||...||.+|+.+|++|+|+.
T Consensus 2 ~~~~l~~lI~~yL~~~g~~~ta~~l~~e~~~~ 33 (34)
T smart00667 2 SRSELNRLILEYLLRNGYEETAETLQKESGLS 33 (34)
T ss_pred cHHHHHHHHHHHHHHcCHHHHHHHHHHHhCCC
Confidence 36789999999999999999999999999974
|
Alpha-helical motif present in Lis1, treacle, Nopp140, some katanin p60 subunits, muskelin, tonneau, LEUNIG and numerous WD40 repeat-containing proteins. It is suggested that LisH motifs contribute to the regulation of microtubule dynamics, either by mediating dimerisation, or else by binding cytoplasmic dynein heavy chain or microtubules directly. |
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.0051 Score=62.70 Aligned_cols=216 Identities=13% Similarity=0.147 Sum_probs=118.4
Q ss_pred EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001319 840 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 840 ~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
.+.+-...+..++|.|+++.++++....+.|..++. +|+.++++.-. .+..-+|++..++.++++--.++.+.+.++.
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~ 94 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTID 94 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE-
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEe
Confidence 344555679999999966778888888999988886 57777766433 3668899999888888877779999999985
Q ss_pred CCccc-cce---EEeecC-CCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCC---ceeeeE-----eccCCCCCCCEE
Q 001319 919 TWEKR-KSV---TIHIPA-GKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASK---MERIRQ-----WTPQDALSAPIS 984 (1101)
Q Consensus 919 ~~~~~-~~~---~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~---~~~~~~-----~~~~~~h~~~v~ 984 (1101)
..... ... .+.... .......-.++|++.+..|.++. ..-..+|.+.. ...+.. +.........+.
T Consensus 95 ~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S 174 (248)
T PF06977_consen 95 DDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLS 174 (248)
T ss_dssp ---TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---
T ss_pred ccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceecccc
Confidence 43221 111 111111 12225688999999877777765 44456666553 111111 110111245688
Q ss_pred EEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEE
Q 001319 985 CAVYSCNS-QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1062 (1101)
Q Consensus 985 ~v~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iW 1062 (1101)
++++.|.. .+++.......|.++| .+|+.+..+........- ...--.+-+++|.+ +++++++ ++-+...+|
T Consensus 175 ~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl---~~~~~QpEGIa~d~-~G~LYIv-sEpNlfy~f 247 (248)
T PF06977_consen 175 GLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGL---SKDIPQPEGIAFDP-DGNLYIV-SEPNLFYRF 247 (248)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG----SS---SEEEEEE-T-T--EEEE-ETTTEEEEE
T ss_pred ceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCc---ccccCCccEEEECC-CCCEEEE-cCCceEEEe
Confidence 99998864 5666788888999999 677777766543321000 01112355899999 5765554 466655554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0038 Score=69.66 Aligned_cols=194 Identities=12% Similarity=0.073 Sum_probs=117.6
Q ss_pred eecccCcEEEEEEecCCCceEEEEecCC--ceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccE-EEEeccCCeEEE
Q 001319 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDD--KLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF-IFSTAIDGKIKA 522 (1101)
Q Consensus 447 l~~h~~~V~~l~~s~d~~~~~l~s~~~d--~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~~~d~~i~~ 522 (1101)
+..-...+..-+|+|+++.+..++-... ..+.++| .+++....+. ..+.-..-+|+| ||+. +++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fsp--DG~~l~f~~~rdg~~~i 264 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSP--DGSKLAFSSSRDGSPDI 264 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCC--CCCEEEEEECCCCCccE
Confidence 4445556788899999996433333333 3588899 5554332222 222333446666 4444 556666776555
Q ss_pred E--ecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEE
Q 001319 523 W--LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 523 w--d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
| |+....... +....+.-..-.|+|||++++..+ +..+...|.+.+.+.+...+....... -..-.++|||+++
T Consensus 265 y~~dl~~~~~~~-Lt~~~gi~~~Ps~spdG~~ivf~S-dr~G~p~I~~~~~~g~~~~riT~~~~~--~~~p~~SpdG~~i 340 (425)
T COG0823 265 YLMDLDGKNLPR-LTNGFGINTSPSWSPDGSKIVFTS-DRGGRPQIYLYDLEGSQVTRLTFSGGG--NSNPVWSPDGDKI 340 (425)
T ss_pred EEEcCCCCccee-cccCCccccCccCCCCCCEEEEEe-CCCCCcceEEECCCCCceeEeeccCCC--CcCccCCCCCCEE
Confidence 5 555555332 333333334778999999999886 455666888888887766443333222 1256799999999
Q ss_pred EEEeC-CCc--EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 601 LAVGE-DSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 601 ~~~~~-dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
+..+. +|. |.+.|+.++.....+.... ....-.|.++|+.+...+..
T Consensus 341 ~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~---~~e~ps~~~ng~~i~~~s~~ 390 (425)
T COG0823 341 VFESSSGGQWDIDKNDLASGGKIRILTSTY---LNESPSWAPNGRMIMFSSGQ 390 (425)
T ss_pred EEEeccCCceeeEEeccCCCCcEEEccccc---cCCCCCcCCCCceEEEeccC
Confidence 88763 344 6677776665444443222 23566788888877766543
|
|
| >KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00014 Score=75.41 Aligned_cols=115 Identities=13% Similarity=0.147 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC----------HHHHHHHHhccCHHHHHHHHcCCCCCCCccchhhHHH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN----------MKYFEEKVQAGDWDEVEKYLSGFTKVDDNRYSMKIFF 74 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~----------~~~~~~~i~~g~w~~~~~~l~~~~~~~~~~~~~~~~~ 74 (1101)
.+.+..+|..|+...|..+.+..|.+|+|...+ +.++-+++..|+-.-|++.+..-...-.+..+ .+.|
T Consensus 116 ~~~ln~ai~~h~~rqGm~dv~~~l~~Ea~~~~~~~~~~~~F~el~~Iv~~lke~Dl~~aLeWa~~~~~~L~~~~s-~LE~ 194 (394)
T KOG2817|consen 116 SQVLNEAIVYHFYRQGMDDVGECLIKEAGLSEDESKSRTEFVELNQIVEALKERDLEPALEWAESNRQKLKEKSS-SLEF 194 (394)
T ss_pred HHHHHHHHHHHHHHcCchHHHHHHHHHhcCCCcchhhhhhHHHHHHHHHHHHhccchhHHHHHHHhhhhhccccc-cHHH
Confidence 344689999999999999999999999998652 88999999999999999998774221111122 3999
Q ss_pred HHHHhHHHHHHccCCHH--HHHHHHHhhcccccccCHHHHHHHHHhhc
Q 001319 75 EIRKQKYLEALDRQDKA--KAVDILVNDLKVFSTFNEELFKEITQLLT 120 (1101)
Q Consensus 75 ~i~~~~~lell~~~~~~--~a~~~l~~~l~~~~~~~~~~~~~l~~~l~ 120 (1101)
.+..+.|++++..|... +|++..|..++||.......++.|-..+.
T Consensus 195 ~Lh~l~fl~l~~~g~~~~~eAl~Yar~~~~~F~~~~~~eIQklm~sl~ 242 (394)
T KOG2817|consen 195 KLHSLHFLSLIRGGKSDQREALRYARTHFAPFVADHLREIQKLMGSLL 242 (394)
T ss_pred HHHHHHHHHHHhcCCcCcHHHHHHHHHhcCccccchHHHHHHHHHHHH
Confidence 99999999999998877 99999999999997766666666655443
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.76 E-value=1.1e-05 Score=87.69 Aligned_cols=204 Identities=13% Similarity=0.179 Sum_probs=132.6
Q ss_pred CCcEEEEEEecCCc-eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEE
Q 001319 344 GSTVISMDFHPSHQ-TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYV 421 (1101)
Q Consensus 344 ~~~V~~v~fspdg~-~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~l 421 (1101)
...+.|++++-+.+ -++++|..+|.|.+-.+....-- ...+..+|....++++|++ |...|
T Consensus 56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-----------------s~E~tp~~ar~Ct~lAwneLDtn~L 118 (783)
T KOG1008|consen 56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-----------------SAEVTPGYARPCTSLAWNELDTNHL 118 (783)
T ss_pred CCCceeehhhcCCchhhhhhccccCceEEeecCCcccc-----------------cceecccccccccccccccccHHHH
Confidence 34677777765543 58899999999999887543211 1124677888999999999 77888
Q ss_pred EEEE----CCCeEEEEeecCCc--ccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCC
Q 001319 422 GVAF----TKHLIQLYSYAGSN--DLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1101)
Q Consensus 422 as~~----~d~~i~vwd~~~~~--~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~ 494 (1101)
|+|- .|..+.|||+.++- ..... .+.+ -.....+++|..|.+ ++.+|...+.++++|....+.....-.+
T Consensus 119 Aagldkhrnds~~~Iwdi~s~ltvPke~~-~fs~~~l~gqns~cwlrd~k--lvlaGm~sr~~~ifdlRqs~~~~~svnT 195 (783)
T KOG1008|consen 119 AAGLDKHRNDSSLKIWDINSLLTVPKESP-LFSSSTLDGQNSVCWLRDTK--LVLAGMTSRSVHIFDLRQSLDSVSSVNT 195 (783)
T ss_pred HhhhhhhcccCCccceecccccCCCcccc-ccccccccCccccccccCcc--hhhcccccchhhhhhhhhhhhhhhhhhh
Confidence 8873 46679999998862 11111 1222 444567899998888 7889999999999994433332222233
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEe-cCCCCeeeeccCCC-----CceEEEEEccCCC-EEEEeecCCCCCceEE
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWL-YDTMGSRVDYDAPG-----HWCTTMLYSADGS-RLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd-~~~~~~~~~~~~~~-----~~v~~~~~s~d~~-~l~~~~~~~~~~~~i~ 567 (1101)
..+..+.+.|- .+.++++-. ||.|.+|| ...-+..+....+. ..+..++|+|... .+++... ..++|+
T Consensus 196 k~vqG~tVdp~-~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~R---dS~tIr 270 (783)
T KOG1008|consen 196 KYVQGITVDPF-SPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSR---DSITIR 270 (783)
T ss_pred hhcccceecCC-CCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhcc---CcceEE
Confidence 34555665552 234666555 99999999 44433333222222 2488999999654 3444443 367899
Q ss_pred EEeCC
Q 001319 568 EWNES 572 (1101)
Q Consensus 568 iwd~~ 572 (1101)
++|+.
T Consensus 271 lydi~ 275 (783)
T KOG1008|consen 271 LYDIC 275 (783)
T ss_pred Eeccc
Confidence 98865
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.4e-05 Score=85.15 Aligned_cols=254 Identities=13% Similarity=0.143 Sum_probs=154.7
Q ss_pred CCCCEeEEEecCCCC--eEEEEc-CCeEEEEECCCceE--EEEeeCCCCCeeEEEEecCCCCEEEEEe----CCCcEEEE
Q 001319 803 LEEAVPCIALSKNDS--YVMSAT-GGKISLFNMMTFKV--MTTFMSPPPASTFLAFHPQDNNIIAIGT----EDSTIHIY 873 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~--~la~~~-dg~i~vwd~~~~~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~----~dg~v~iw 873 (1101)
....+.|++...+.. .+++|. +|.|.+-......- .....++....++++|.+-|..+||+|- .|..+.||
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iw 134 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIW 134 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccce
Confidence 344567777665443 667776 78888877654322 2334556778999999997888888875 46689999
Q ss_pred Eeecc--eEE--Eeecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcC-C
Q 001319 874 NVRVD--EVK--SKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA-D 947 (1101)
Q Consensus 874 d~~~~--~~~--~~~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-d 947 (1101)
|+.++ .+. ..|.+ -......++|-.+.+.+.+|...+.+.++|+.-...... .+. ...+..+.++| .
T Consensus 135 di~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~-svn------Tk~vqG~tVdp~~ 207 (783)
T KOG1008|consen 135 DINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVS-SVN------TKYVQGITVDPFS 207 (783)
T ss_pred ecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhh-hhh------hhhcccceecCCC
Confidence 99876 221 22222 334566889998889999999999999999873211111 111 03567788899 8
Q ss_pred CCEEEEEeCCeEEEEEc-CCceeeeEeccCC--CCCCCEEEEEEccCCC-EEEE-EeCCCcEEEEeCCCC------ceeE
Q 001319 948 QVRMLVVHETQLAIYDA-SKMERIRQWTPQD--ALSAPISCAVYSCNSQ-LVFA-TFCDGNIGVFDADTL------RLRC 1016 (1101)
Q Consensus 948 ~~~l~~~~d~~i~v~d~-~~~~~~~~~~~~~--~h~~~v~~v~~s~dg~-~l~s-~~~dg~i~vwd~~~~------~~~~ 1016 (1101)
+.+++...|+.|.+||. .+-+.......+. .....+..++|+|-.. .+++ .-..++|+.+|+..- +...
T Consensus 208 ~nY~cs~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~v~t~~s~nn~~ 287 (783)
T KOG1008|consen 208 PNYFCSNSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICVVGTEGSANNSV 287 (783)
T ss_pred CCceeccccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccccCCcccccccc
Confidence 88999888999999993 3322221111111 0123489999999543 3444 445678999988642 1111
Q ss_pred eeCCCCcCCCcccCCCC-ccceEEEEEecCC-CCEEEEEECCCeEEEEeCCC
Q 001319 1017 YIAPSTYLSPSVLNGSQ-TVYPLVVAAHPLE-PNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1017 ~~~~~~~~~~~~~~h~~-~~~~~~l~~~p~d-~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.+...... .+.|.. ...+-...|++.+ .+...++-..-+..-+++..
T Consensus 288 ~~~~~s~~---~~q~~~~~s~I~~f~wH~~s~~er~il~~~nl~~~Df~V~e 336 (783)
T KOG1008|consen 288 FVNYESKY---PVQPNSQCSGIDFFTWHTASPTERQILGVINLQPKDFSVHE 336 (783)
T ss_pred eeeecccc---cccccccccceeecCcCcCCccceeEEeeccCChhhccchh
Confidence 11111100 112333 3455677788755 34445555555566555544
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.024 Score=57.95 Aligned_cols=201 Identities=9% Similarity=0.077 Sum_probs=111.7
Q ss_pred CCCCEeEEEecCCCCeE-EEEc-CCeEEEEECCCceEEEEeeCCC-CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 803 LEEAVPCIALSKNDSYV-MSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~l-a~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
....+..++|.|+...| ++.. .+.|.-++. +|+.++.+.-.. +..-.+++.. ++.++++--.++.+.++++....
T Consensus 20 ~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g-~~~~vl~~Er~~~L~~~~~~~~~ 97 (248)
T PF06977_consen 20 ILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLG-NGRYVLSEERDQRLYIFTIDDDT 97 (248)
T ss_dssp --S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-S-TTEEEEEETTTTEEEEEEE----
T ss_pred ccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEEC-CCEEEEEEcCCCcEEEEEEeccc
Confidence 55569999999986655 4444 577888886 578887776433 4577888886 67666665568999999984321
Q ss_pred ------EEEee-----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC---CccccceEEee-c-CCCCCCCcceEE
Q 001319 880 ------VKSKL-----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT---WEKRKSVTIHI-P-AGKTPTGDTRVQ 943 (1101)
Q Consensus 880 ------~~~~~-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~---~~~~~~~~~~~-~-~~~~~~~v~~~~ 943 (1101)
....+ ..+...+-.|+|.+.++.|+.+-...-..++.+.. ........... . .......+.+++
T Consensus 98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~ 177 (248)
T PF06977_consen 98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS 177 (248)
T ss_dssp TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence 11111 13455689999999988888887776677777654 11111111100 0 111115678999
Q ss_pred EcCCCCEEEE-Ee-CCeEEEEEcCCceeeeEeccCCCC------CCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 944 FNADQVRMLV-VH-ETQLAIYDASKMERIRQWTPQDAL------SAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 944 ~s~d~~~l~~-~~-d~~i~v~d~~~~~~~~~~~~~~~h------~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
++|....|.+ ++ +..|..+| .+|+.+..+....+. -...-.|+|.++|++. ..++-+..++|
T Consensus 178 ~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LY-IvsEpNlfy~f 247 (248)
T PF06977_consen 178 YDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLY-IVSEPNLFYRF 247 (248)
T ss_dssp EETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EE-EEETTTEEEEE
T ss_pred EcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEE-EEcCCceEEEe
Confidence 9998766665 44 67788888 567766655443211 2357889999999644 45566665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.12 Score=58.20 Aligned_cols=137 Identities=16% Similarity=0.202 Sum_probs=80.7
Q ss_pred EecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC-C
Q 001319 811 ALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-Q 888 (1101)
Q Consensus 811 ~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~ 888 (1101)
.++.+....+... ++.+.+.+....+. +. ..+++..+++|| ++++||.-..+|.+.|.+..-.+...++.-. .
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~-~~~~i~~iavSp-ng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~ 259 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFKQ---ID-SDGPIIKIAVSP-NGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSK 259 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEcccccc---cc-CCCCeEEEEECC-CCCEEEEEECCCCEEEEECcccceeEEeecCcC
Confidence 3444555444444 55666554433211 22 246899999999 9999999999999999987666666666533 3
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCce
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME 968 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~ 968 (1101)
.....+.|.-+...++.- ...|.+..... ..+.|.-++..++...-..++|+.-..-+
T Consensus 260 ~~p~~~~WCG~dav~l~~--~~~l~lvg~~~--------------------~~~~~~~~~~~~l~~E~DG~riit~~~~~ 317 (410)
T PF04841_consen 260 SPPKQMAWCGNDAVVLSW--EDELLLVGPDG--------------------DSISFWYDGPVILVSEIDGVRIITSTSHE 317 (410)
T ss_pred CCCcEEEEECCCcEEEEe--CCEEEEECCCC--------------------CceEEeccCceEEeccCCceEEEeCCceE
Confidence 456777776554333222 23344443221 12344445554555554458888777666
Q ss_pred eeeEec
Q 001319 969 RIRQWT 974 (1101)
Q Consensus 969 ~~~~~~ 974 (1101)
.+....
T Consensus 318 ~l~~Vp 323 (410)
T PF04841_consen 318 FLQRVP 323 (410)
T ss_pred EEEECC
Confidence 666554
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.026 Score=62.97 Aligned_cols=207 Identities=14% Similarity=0.161 Sum_probs=145.8
Q ss_pred EeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC---CCcEEEEEeecceEE
Q 001319 807 VPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---DSTIHIYNVRVDEVK 881 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---dg~v~iwd~~~~~~~ 881 (1101)
-..+++++++..+.... ++.|.+.|..+.+....... ......+++++ +++.+.++.. ++++.+.|..+++..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~v-G~~P~~~~~~~-~~~~vYV~n~~~~~~~vsvid~~t~~~~ 153 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPV-GLGPVGLAVDP-DGKYVYVANAGNGNNTVSVIDAATNKVT 153 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeee-ccCCceEEECC-CCCEEEEEecccCCceEEEEeCCCCeEE
Confidence 45678888888555444 68899999887777666543 22677899999 6655555544 689999999998888
Q ss_pred EeeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C--
Q 001319 882 SKLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-- 956 (1101)
Q Consensus 882 ~~~~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d-- 956 (1101)
.....-..+ ..++++|+|+.+..+. .++.|.+.|..+..... ...... -........+.++|+|..+.+.. +
T Consensus 154 ~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~-~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 154 ATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSL-VGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred EEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccc-cccCCCCceEEECCCCCEEEEEeccCCC
Confidence 775433344 8999999999666554 78899999977754332 110000 11114567899999999877743 2
Q ss_pred CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC-CCcEEEEeCCCCceeEeeCC
Q 001319 957 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC-DGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 957 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+.+...|..++.....-..... . ....+.++|+|+++.+... .+.+.+-|..+......+..
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~-~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGS-G-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred ceEEEEeCCCceEEEecccccc-C-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 5888999988887766222210 2 5667899999999888744 48899999999888776553
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.061 Score=60.04 Aligned_cols=242 Identities=16% Similarity=0.190 Sum_probs=156.6
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
....+++.+++..+.... .+.+...+................-..+++++.+.+..+....++.|.+.|..+.+....
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 345677888886555443 334555555422222222211133456788883444666666679999999877766655
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCe
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQ 958 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~ 958 (1101)
..--. ....++++++++.+..+.. ++++.+.|-.+++.... .+.+. .-..++++|+|..+.+.. ++.
T Consensus 112 ~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~----~~vG~---~P~~~a~~p~g~~vyv~~~~~~~ 183 (381)
T COG3391 112 IPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT----IPVGN---TPTGVAVDPDGNKVYVTNSDDNT 183 (381)
T ss_pred eeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE----EecCC---CcceEEECCCCCeEEEEecCCCe
Confidence 43222 5678999999987777655 67888888888665444 22232 227899999999888855 899
Q ss_pred EEEEEcCCceeeeEeccC--CCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeEeeCCCCcCCCcccCCCC
Q 001319 959 LAIYDASKMERIRQWTPQ--DALSAPISCAVYSCNSQLVFATFCD---GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQ 1033 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~ 1033 (1101)
|.+.|........ -... ..-......+.+++||.++.+.... +.+.+.|..++......... ..
T Consensus 184 v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~----------~~ 252 (381)
T COG3391 184 VSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPV----------GS 252 (381)
T ss_pred EEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecccc----------cc
Confidence 9999987766653 1110 1113445678999999977765433 68999999998877653221 12
Q ss_pred ccceEEEEEecCCCCEEEEE-ECCCeEEEEeCCCCC
Q 001319 1034 TVYPLVVAAHPLEPNQFAIG-LTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1034 ~~~~~~l~~~p~d~~~l~s~-~~Dg~v~iWd~~~~~ 1068 (1101)
. .+..+...| ++..+... +..+.+.+-|..+..
T Consensus 253 ~-~~~~v~~~p-~g~~~yv~~~~~~~V~vid~~~~~ 286 (381)
T COG3391 253 G-APRGVAVDP-AGKAAYVANSQGGTVSVIDGATDR 286 (381)
T ss_pred C-CCCceeECC-CCCEEEEEecCCCeEEEEeCCCCc
Confidence 1 344688889 56666655 455889999988876
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.044 Score=54.65 Aligned_cols=210 Identities=16% Similarity=0.098 Sum_probs=132.1
Q ss_pred EeEEEecCCCC-eEEEEc-CCe-EEEEECCCceEEEEeeCCCCC--eeEEEEecCCCCEEEEEeCC-----CcEEEEEee
Q 001319 807 VPCIALSKNDS-YVMSAT-GGK-ISLFNMMTFKVMTTFMSPPPA--STFLAFHPQDNNIIAIGTED-----STIHIYNVR 876 (1101)
Q Consensus 807 v~~~~~s~dg~-~la~~~-dg~-i~vwd~~~~~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~d-----g~v~iwd~~ 876 (1101)
...++++|--. -++.+. -|+ ..++|....+...++....+. --.=.||| ||.+|...-.| |.|-|||..
T Consensus 70 ~Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~-dG~~LYATEndfd~~rGViGvYd~r 148 (366)
T COG3490 70 GHGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSP-DGRLLYATENDFDPNRGVIGVYDAR 148 (366)
T ss_pred cCCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCC-CCcEEEeecCCCCCCCceEEEEecc
Confidence 34577887544 455555 455 788999887776665443322 12347999 89988765443 689999998
Q ss_pred cc-eEEEeeccCCCCeeEEEEcCCCCEEEEEeCC------------------CcEEEEECCCCccccceEEeecCCCCCC
Q 001319 877 VD-EVKSKLKGHQKRITGLAFSTSLNILVSSGAD------------------AQLCVWSIDTWEKRKSVTIHIPAGKTPT 937 (1101)
Q Consensus 877 ~~-~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D------------------g~v~lwd~~~~~~~~~~~~~~~~~~~~~ 937 (1101)
.+ +.+.++..|.-....+.|.+||+.|+.+... -++.+.|..+|+.+....+.....+ -
T Consensus 149 ~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~--l 226 (366)
T COG3490 149 EGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQ--L 226 (366)
T ss_pred cccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhh--c
Confidence 55 5567888888888899999999999887541 1344455555555444333211111 5
Q ss_pred CcceEEEcCCCCEEEEEe------CCeEEEEEcCCceeeeEeccCC----CCCCCEEEEEEccCCCEEEEEe-CCCcEEE
Q 001319 938 GDTRVQFNADQVRMLVVH------ETQLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF-CDGNIGV 1006 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~----~h~~~v~~v~~s~dg~~l~s~~-~dg~i~v 1006 (1101)
++..++..+||+.++.+. |.-.-|=....++.+..+.... .....|-+|+...+..+++..+ ..+...+
T Consensus 227 SiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi 306 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVI 306 (366)
T ss_pred ceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEE
Confidence 788899999998877642 2222222223344333333221 0134577888887777766555 5556788
Q ss_pred EeCCCCceeEeeC
Q 001319 1007 FDADTLRLRCYIA 1019 (1101)
Q Consensus 1007 wd~~~~~~~~~~~ 1019 (1101)
||..+|..+....
T Consensus 307 ~da~tG~vv~~a~ 319 (366)
T COG3490 307 WDAATGAVVSEAA 319 (366)
T ss_pred EEcCCCcEEeccc
Confidence 9999999876543
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.017 Score=67.39 Aligned_cols=204 Identities=14% Similarity=0.133 Sum_probs=112.9
Q ss_pred CCeeEEEEecCCCCEEEEEe------CCC--cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCC--------
Q 001319 846 PASTFLAFHPQDNNIIAIGT------EDS--TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD-------- 909 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~------~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D-------- 909 (1101)
..+...+++| +++.+|... .|+ .|.+++. .+.......+. ..+.-.|+|||+.|++....
T Consensus 350 ~~vsspaiSp-dG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSR-SGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEGH--SLTRPSWSLDADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECC-CCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecCC--CCCCceECCCCCceEEEecCcceEEEec
Confidence 4678899999 777776655 244 4444453 22222223332 48889999999888777533
Q ss_pred ----CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEE---EEcCCceeeeE-----eccCC
Q 001319 910 ----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAI---YDASKMERIRQ-----WTPQD 977 (1101)
Q Consensus 910 ----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v---~d~~~~~~~~~-----~~~~~ 977 (1101)
+.+.+.++..++... .....+..+.|||||..++...+++|.+ -....|. ... +...
T Consensus 426 ~~~~gql~~~~vd~ge~~~---------~~~g~Issl~wSpDG~RiA~i~~g~v~Va~Vvr~~~G~-~~l~~~~~l~~~- 494 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---------RVPGPISELQLSRDGVRAAMIIGGKVYLAVVEQTEDGQ-YALTNPREVGPG- 494 (591)
T ss_pred cCCCceEEEEeccCchhhh---------ccCCCcCeEEECCCCCEEEEEECCEEEEEEEEeCCCCc-eeecccEEeecc-
Confidence 223333444333211 1125799999999999999977788877 5545554 222 2211
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC-ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL-RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
-...+..+.|..++.++ ++..++...+|.+.-. .....+.. ..-...++.++-++ ..++.+..+
T Consensus 495 -l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~----------~n~~~~v~~vaa~~---~~iyv~~~~ 559 (591)
T PRK13616 495 -LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPS----------RNLSAPVVAVAASP---STVYVTDAR 559 (591)
T ss_pred -cCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCC----------CCccCceEEEecCC---ceEEEEcCC
Confidence 13446889999999855 5555555555654422 11111111 10111234566555 245555666
Q ss_pred CeEEEEeCCCCCCccccCCCCCC
Q 001319 1057 GSVKVMEPSESEGKWGVSPPVDN 1079 (1101)
Q Consensus 1057 g~v~iWd~~~~~~~~~~~~~~~~ 1079 (1101)
|.+.+=.-.++...|.--++..+
T Consensus 560 g~~~l~~~~~~~~~W~ev~~l~g 582 (591)
T PRK13616 560 AVLQLPNSDSGDQYWREVPGLMG 582 (591)
T ss_pred ceEEecCCCCCCCCceECccccC
Confidence 64444323333466766554433
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.053 Score=57.95 Aligned_cols=205 Identities=13% Similarity=0.152 Sum_probs=118.5
Q ss_pred CCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEe--------------eCCCCCeeEEE--EecCCCCEEEEEeCC
Q 001319 804 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTF--------------MSPPPASTFLA--FHPQDNNIIAIGTED 867 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~--------------~~~~~~i~~l~--~s~~~~~~la~g~~d 867 (1101)
...|..+...++-+.+++-+|+.+.++++......... ......+...+ -...+...|+++. .
T Consensus 35 ~~~I~ql~vl~~~~~llvLsd~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~-k 113 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLSDGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAV-K 113 (275)
T ss_pred cceEEEEEEecccCEEEEEcCCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEEEEE-C
Confidence 33489999999888888888999999998765444311 01122344444 1122445555554 4
Q ss_pred CcEEEEEeecc-----eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecC-----CCCCC
Q 001319 868 STIHIYNVRVD-----EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-----GKTPT 937 (1101)
Q Consensus 868 g~v~iwd~~~~-----~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-----~~~~~ 937 (1101)
.+|.+|.+... +..+++. -...+.+++|. ++.++.|..++ ..+.|+.++............ .....
T Consensus 114 k~i~i~~~~~~~~~f~~~~ke~~-lp~~~~~i~~~--~~~i~v~~~~~-f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 114 KKILIYEWNDPRNSFSKLLKEIS-LPDPPSSIAFL--GNKICVGTSKG-FYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred CEEEEEEEECCcccccceeEEEE-cCCCcEEEEEe--CCEEEEEeCCc-eEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 58999988763 3445554 34788999998 55677776554 889999976643322111100 00001
Q ss_pred CcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEe
Q 001319 938 GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1017 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1017 (1101)
....+.--+++.+|++.+ . +.+|=-..|+..+.....- ...+.++++. ..||+..+. +.|.||++.+++++..
T Consensus 190 ~~~~~~~~~~~e~Ll~~~-~-~g~fv~~~G~~~r~~~i~W--~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ~ 262 (275)
T PF00780_consen 190 KPLGIFQLSDNEFLLCYD-N-IGVFVNKNGEPSRKSTIQW--SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQT 262 (275)
T ss_pred CceEEEEeCCceEEEEec-c-eEEEEcCCCCcCcccEEEc--CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEEE
Confidence 122222233456665543 2 3333333444333111111 3455666664 457877665 5599999999999888
Q ss_pred eCC
Q 001319 1018 IAP 1020 (1101)
Q Consensus 1018 ~~~ 1020 (1101)
+..
T Consensus 263 i~~ 265 (275)
T PF00780_consen 263 IPL 265 (275)
T ss_pred EEC
Confidence 773
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.029 Score=55.89 Aligned_cols=261 Identities=13% Similarity=0.138 Sum_probs=141.4
Q ss_pred EEEEeCCCCE-EEEEeCCCc-EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC-----CcEEEEEccccc
Q 001319 590 VVQFDTTQNH-FLAVGEDSQ-IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIGL 662 (1101)
Q Consensus 590 ~~~~~~~~~~-l~~~~~dg~-i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~~ 662 (1101)
.++++|.... ++.+-.-|+ ..++|....+...++....+-.-.-.-.|||||.+|+..-.| |.|-|||...+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 3778886544 444544454 678899888777766544332223445799999999987543 789999998765
Q ss_pred cccccccCCCcccccCcceeeeeeeccccccccCCCCCcc--e--eccC-CCCCCceEEEEEEeCCCeEEEEcCCCCCCc
Q 001319 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK--V--ERSS-PVRPSPIILAEIVDSGQCRLVTMPESTDTS 737 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~--~--~~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
..+-.+..+... ...+.+.+||+.++....+-... . .++. ........+.+..+........+|. ..+.
T Consensus 152 qrvgE~~t~GiG-----pHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~-~l~~ 225 (366)
T COG3490 152 QRVGEFSTHGIG-----PHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPA-SLRQ 225 (366)
T ss_pred ceecccccCCcC-----cceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCch-hhhh
Confidence 555444443332 34678899999987654422111 0 0111 1111112233334444445555553 3355
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC-CCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP-SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
..|..+...+||..++.+--.|. .....+ .+.......++..+....+.. .....|-+++.+.+.
T Consensus 226 lSiRHld~g~dgtvwfgcQy~G~-------~~d~ppLvg~~~~g~~l~~~~~pee~~~-------~~anYigsiA~n~~~ 291 (366)
T COG3490 226 LSIRHLDIGRDGTVWFGCQYRGP-------RNDLPPLVGHFRKGEPLEFLDLPEEQTA-------AFANYIGSIAANRRD 291 (366)
T ss_pred cceeeeeeCCCCcEEEEEEeeCC-------CccCCcceeeccCCCcCcccCCCHHHHH-------HHHhhhhheeecccC
Confidence 66777777777764443322211 110000 000000011111111111111 134557788888877
Q ss_pred CeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEe
Q 001319 817 SYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 875 (1101)
Q Consensus 817 ~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~ 875 (1101)
.+++..+ .+...+||..+|..+..-... .+..++-.. .=+++.+.+|.+.+++-
T Consensus 292 glV~lTSP~GN~~vi~da~tG~vv~~a~l~--daaGva~~~---~gf~vssg~G~~~~~s~ 347 (366)
T COG3490 292 GLVALTSPRGNRAVIWDAATGAVVSEAALP--DAAGVAAAK---GGFAVSSGQGRIIFYSR 347 (366)
T ss_pred CeEEEecCCCCeEEEEEcCCCcEEeccccc--ccccceecc---CceEEecCCceEEeccc
Confidence 7777766 567999999999987654321 222333322 33555666888887743
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.012 Score=64.34 Aligned_cols=175 Identities=16% Similarity=0.183 Sum_probs=106.0
Q ss_pred CeEEEEECCCceEEEEeeCCCC-CeeEEE---EecC---CCCEEEEEeC----------CCcEEEEEeecc----eEEEe
Q 001319 825 GKISLFNMMTFKVMTTFMSPPP-ASTFLA---FHPQ---DNNIIAIGTE----------DSTIHIYNVRVD----EVKSK 883 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~~-~i~~l~---~s~~---~~~~la~g~~----------dg~v~iwd~~~~----~~~~~ 883 (1101)
..|++.|..+.+.+..+.-... .+.+++ +..+ ...++++|+. .|.|.++++... ..+..
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~ 81 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKL 81 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEE
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEEEE
Confidence 3588888888887776654332 344443 3321 1578888863 289999999984 12221
Q ss_pred e--ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc-cccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeE
Q 001319 884 L--KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE-KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQL 959 (1101)
Q Consensus 884 ~--~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i 959 (1101)
+ ....++|++++-- +++ |+.+. .+.|.+|++...+ ........ ...........+.++++|+ .+.+
T Consensus 82 i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~-------~~~~i~sl~~~~~~I~vgD~~~sv 151 (321)
T PF03178_consen 82 IHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYD-------SPFYITSLSVFKNYILVGDAMKSV 151 (321)
T ss_dssp EEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE--------BSSSEEEEEEETTEEEEEESSSSE
T ss_pred EEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheec-------ceEEEEEEeccccEEEEEEcccCE
Confidence 1 2357889999876 344 44333 4789999999877 32222222 2223344444466888887 5777
Q ss_pred EEEEcCC-ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 960 AIYDASK-MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 960 ~v~d~~~-~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
.++..+. ...+..+.. +.....++++.|-+|++.++.++.+|.+.++...
T Consensus 152 ~~~~~~~~~~~l~~va~-d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 152 SLLRYDEENNKLILVAR-DYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEEEEETTTE-EEEEEE-ESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred EEEEEEccCCEEEEEEe-cCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 7774432 222222221 2226679999998777899999999999999887
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0068 Score=70.71 Aligned_cols=187 Identities=11% Similarity=0.059 Sum_probs=106.3
Q ss_pred CCEeEEEecCCCCeEEEEc-------CC--eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC--------
Q 001319 805 EAVPCIALSKNDSYVMSAT-------GG--KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-------- 867 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-------dg--~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-------- 867 (1101)
..+.+.++||||+.+|... ++ .|.+++.. +.......+ ...+.-.|+| ++..|++....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~~~lt~g--~~~t~PsWsp-DG~~lw~v~dg~~~~~v~~ 425 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVAVQVLEG--HSLTRPSWSL-DADAVWVVVDGNTVVRVIR 425 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-CcceeeecC--CCCCCceECC-CCCceEEEecCcceEEEec
Confidence 3577899999999887653 32 46666653 333222333 2488899999 77766666422
Q ss_pred ----CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEE---EECCCCccccceEEeecCCCCCCCcc
Q 001319 868 ----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCV---WSIDTWEKRKSVTIHIPAGKTPTGDT 940 (1101)
Q Consensus 868 ----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~l---wd~~~~~~~~~~~~~~~~~~~~~~v~ 940 (1101)
+.+.+.++..++... ...+.|..+.|||||.+++... +|.|.+ -....|+...........+.. ..+.
T Consensus 426 ~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~-~~~~ 500 (591)
T PRK13616 426 DPATGQLARTPVDASAVAS---RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLG-DTAV 500 (591)
T ss_pred cCCCceEEEEeccCchhhh---ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccC-Cccc
Confidence 233333444333322 2356799999999999988766 577777 444555422111112212111 3357
Q ss_pred eEEEcCCCCEEEEEeCC--eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 941 RVQFNADQVRMLVVHET--QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 941 ~~~~s~d~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
.+.|..++.+++...+. .+...+++... ...+ .......++..|+-+++ .|+....+|.+
T Consensus 501 ~l~W~~~~~L~V~~~~~~~~v~~v~vDG~~-~~~~-~~~n~~~~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 501 SLDWRTGDSLVVGRSDPEHPVWYVNLDGSN-SDAL-PSRNLSAPVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred cceEecCCEEEEEecCCCCceEEEecCCcc-cccc-CCCCccCceEEEecCCc--eEEEEcCCceE
Confidence 89999999976554433 34444444222 2221 22122566777777753 45555666633
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=97.43 E-value=0.14 Score=58.41 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=127.4
Q ss_pred EeEEEecCCCCeEEEEc--CC----eEEEEECCCceEEEEe-eCCCCCeeEEEEecCCCCEEEEEeCCC-----------
Q 001319 807 VPCIALSKNDSYVMSAT--GG----KISLFNMMTFKVMTTF-MSPPPASTFLAFHPQDNNIIAIGTEDS----------- 868 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~--dg----~i~vwd~~~~~~~~~~-~~~~~~i~~l~~s~~~~~~la~g~~dg----------- 868 (1101)
+....+||||+++|.+- +| .++++|+.+++.+... .. .....+.|.+ +++.++....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~--~~~~~~~W~~-d~~~~~y~~~~~~~~~~~~~~~~ 202 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIEN--PKFSSVSWSD-DGKGFFYTRFDEDQRTSDSGYPR 202 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEE--EESEEEEECT-TSSEEEEEECSTTTSS-CCGCCE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccc--cccceEEEeC-CCCEEEEEEeCcccccccCCCCc
Confidence 44688999999998773 34 3999999999876532 22 1223499999 766665554332
Q ss_pred cEEEEEeecceE--EEeeccCCCC--eeEEEEcCCCCEEEEEeCC----CcEEEEECCCCc--cccceEEeecCCCCCCC
Q 001319 869 TIHIYNVRVDEV--KSKLKGHQKR--ITGLAFSTSLNILVSSGAD----AQLCVWSIDTWE--KRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 869 ~v~iwd~~~~~~--~~~~~~h~~~--V~~l~~s~d~~~l~s~s~D----g~v~lwd~~~~~--~~~~~~~~~~~~~~~~~ 938 (1101)
.|+.|.+.+... ...+...... ...+..++|+++|+..... ..+.+.++..+. ......+.... ..
T Consensus 203 ~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~----~~ 278 (414)
T PF02897_consen 203 QVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPRE----DG 278 (414)
T ss_dssp EEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESS----SS
T ss_pred EEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCC----Cc
Confidence 367777765422 2334333333 5688899999987754322 347777887751 11222222111 22
Q ss_pred cceEEEcCCCCEEEEEe----CCeEEEEEcCCcee---eeEeccCCCCCCCEEEEEEccCCCEEEE-EeCCC--cEEEEe
Q 001319 939 DTRVQFNADQVRMLVVH----ETQLAIYDASKMER---IRQWTPQDALSAPISCAVYSCNSQLVFA-TFCDG--NIGVFD 1008 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~----d~~i~v~d~~~~~~---~~~~~~~~~h~~~v~~v~~s~dg~~l~s-~~~dg--~i~vwd 1008 (1101)
+....-+..+.+++.+. .+.|.-.++..... ...+..+ ...+.-..+...+.+|+. ...++ .|++++
T Consensus 279 ~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~---~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~ 355 (414)
T PF02897_consen 279 VEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPE---DEDVSLEDVSLFKDYLVLSYRENGSSRLRVYD 355 (414)
T ss_dssp -EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEEETTEEEEEEEETTEEEEEEEE
T ss_pred eEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCC---CCceeEEEEEEECCEEEEEEEECCccEEEEEE
Confidence 22222223444444432 56788888877653 2233332 333333333344555554 44444 588899
Q ss_pred CCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEEC---CCeEEEEeCCCCC
Q 001319 1009 ADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT---DGSVKVMEPSESE 1068 (1101)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~---Dg~v~iWd~~~~~ 1068 (1101)
+..+.....+... ..+.+..+...+....+.++.+. -+++..||+.+++
T Consensus 356 ~~~~~~~~~~~~p-----------~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~ 407 (414)
T PF02897_consen 356 LDDGKESREIPLP-----------EAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGE 407 (414)
T ss_dssp TT-TEEEEEEESS-----------SSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTC
T ss_pred CCCCcEEeeecCC-----------cceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCC
Confidence 9933333333321 11222344444433445554443 3578999999988
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.06 Score=57.18 Aligned_cols=199 Identities=15% Similarity=0.102 Sum_probs=116.4
Q ss_pred EEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec--
Q 001319 810 IALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-- 885 (1101)
Q Consensus 810 ~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~-- 885 (1101)
..|.++...|...+ .+.|.-|+..+++... +.. ...+.++..-. .+..|+++ .. .+++++..++..+..+.
T Consensus 30 P~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~-p~~~~~~~~~d-~~g~Lv~~-~~-g~~~~~~~~~~~~t~~~~~ 104 (307)
T COG3386 30 PVWDPDRGALLWVDILGGRIHRLDPETGKKRV-FPS-PGGFSSGALID-AGGRLIAC-EH-GVRLLDPDTGGKITLLAEP 104 (307)
T ss_pred ccCcCCCCEEEEEeCCCCeEEEecCCcCceEE-EEC-CCCcccceeec-CCCeEEEE-cc-ccEEEeccCCceeEEeccc
Confidence 45667777666665 6889999988664432 222 23334444433 33344333 23 37777776665532221
Q ss_pred --cC-CCCeeEEEEcCCCCEEEEEeC-----C----CcEEEEECC-CCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 886 --GH-QKRITGLAFSTSLNILVSSGA-----D----AQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 886 --~h-~~~V~~l~~s~d~~~l~s~s~-----D----g~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
+. ....+.+...|+|.+.++... . ..=.+|.+. .+..+.. ...+. ...+.++||||++.|.
T Consensus 105 ~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l-----~~~~~-~~~NGla~SpDg~tly 178 (307)
T COG3386 105 EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRL-----LDDDL-TIPNGLAFSPDGKTLY 178 (307)
T ss_pred cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEe-----ecCcE-EecCceEECCCCCEEE
Confidence 11 245678889999987776544 1 112455555 2222111 11111 4567899999999888
Q ss_pred EEe--CCeEEEEEcCC--ceeeeE--eccCCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeEeeCC
Q 001319 953 VVH--ETQLAIYDASK--MERIRQ--WTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 953 ~~~--d~~i~v~d~~~--~~~~~~--~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-~i~vwd~~~~~~~~~~~~ 1020 (1101)
.++ .+.|.-|++.. +..... +.....+.+..-.++...+|.+.+++..+| .|.+|+.+ |+++..+..
T Consensus 179 ~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~l 252 (307)
T COG3386 179 VADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKL 252 (307)
T ss_pred EEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEEC
Confidence 866 47888887752 211110 111111256667778888898886555554 89999999 888888774
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.048 Score=57.94 Aligned_cols=221 Identities=15% Similarity=0.121 Sum_probs=133.2
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeE
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i 430 (1101)
.|.|++..|+.+--..+.|.-|+..+++... +. +.+.+.++..-.++..|+++. .| +
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~--------------------~~-~p~~~~~~~~~d~~g~Lv~~~-~g-~ 87 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV--------------------FP-SPGGFSSGALIDAGGRLIACE-HG-V 87 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE--------------------EE-CCCCcccceeecCCCeEEEEc-cc-c
Confidence 4667777677777778899999988765422 11 233445555544555555553 33 7
Q ss_pred EEEeecCCcccccceee-ecc-cCcEEEEEEecCCCceEEEEecCC------------ceEEEEEcCCceeEEeecCCcC
Q 001319 431 QLYSYAGSNDLRQHSQI-DAH-VGAVNDLAFAYPNKLLCVVTCGDD------------KLIKVWELSGRKLFNFEGHEAP 496 (1101)
Q Consensus 431 ~vwd~~~~~~~~~~~~l-~~h-~~~V~~l~~s~d~~~~~l~s~~~d------------~~v~iwd~~~~~~~~~~~h~~~ 496 (1101)
.+++.+++.....+... .+. ...-+.+...|+|. +..+... |.|+..|..+..++.+..+-..
T Consensus 88 ~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~---~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~ 164 (307)
T COG3386 88 RLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGR---IWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTI 164 (307)
T ss_pred EEEeccCCceeEEeccccCCCCcCCCCceeEcCCCC---EEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEe
Confidence 77777665542222111 122 23567888999998 3333322 2233444456666666666667
Q ss_pred eEEEecccCCCccEEEEec-cCCeEEEEecCC-----CC--eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 497 VYSICPHHKENIQFIFSTA-IDGKIKAWLYDT-----MG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~~-----~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
-+.|+|+| |++.++.+. ..+.|.-|+++. .. .........+..-.++...+|.+-+++.. +.+.|.+
T Consensus 165 ~NGla~Sp--Dg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~---~g~~v~~ 239 (307)
T COG3386 165 PNGLAFSP--DGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVW---GGGRVVR 239 (307)
T ss_pred cCceEECC--CCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEeccc---CCceEEE
Confidence 78999988 455555554 457888887762 11 11222333455667888888888764432 2248999
Q ss_pred EeCCCCeeEEEecccCCcceEEEEEe-CCCCEEEEEe
Q 001319 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1101)
|+.+ |+.+..+..... .+++++|. ++.+.|++.+
T Consensus 240 ~~pd-G~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 240 FNPD-GKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ECCC-CcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 9998 999888887754 56666665 4456665544
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.014 Score=69.03 Aligned_cols=149 Identities=12% Similarity=0.087 Sum_probs=99.4
Q ss_pred CCCEEEEE-eCCCcEEEEEeecceEEEeeccCCCC-eeEEEEcC-----CCCEEEEEeCCCcEEEEECCCCccccceEEe
Q 001319 857 DNNIIAIG-TEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFST-----SLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 857 ~~~~la~g-~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~-----d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~ 929 (1101)
+..+|+.. .....|+-.|+..|+.+..+..|... |..++-.. ....-+.|-.+..+..||..-.... ...-+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k-~v~~~ 570 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK-LVDSQ 570 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc-eeecc
Confidence 44555443 34678999999999999999988654 55544321 1223456777888999998753311 01111
Q ss_pred ecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 930 IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
...-......++++-+.+|...+.+.+|.|++||--..+....+.+. ..+|..|..+.||+||++.+ +..+.+++.
T Consensus 571 ~k~Y~~~~~Fs~~aTt~~G~iavgs~~G~IRLyd~~g~~AKT~lp~l---G~pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 571 SKQYSSKNNFSCFATTEDGYIAVGSNKGDIRLYDRLGKRAKTALPGL---GDPIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred ccccccCCCceEEEecCCceEEEEeCCCcEEeecccchhhhhcCCCC---CCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 11112225677888888888777778999999995443333333332 89999999999999988766 667888876
Q ss_pred C
Q 001319 1010 D 1010 (1101)
Q Consensus 1010 ~ 1010 (1101)
.
T Consensus 647 ~ 647 (794)
T PF08553_consen 647 L 647 (794)
T ss_pred e
Confidence 3
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.23 E-value=0.021 Score=62.49 Aligned_cols=178 Identities=17% Similarity=0.237 Sum_probs=104.3
Q ss_pred CCeEEEEc----------C-CeEEEEECCCc-----eE--EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 816 DSYVMSAT----------G-GKISLFNMMTF-----KV--MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 816 g~~la~~~----------d-g~i~vwd~~~~-----~~--~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
..++++|. . |.|.++++... +. +... ...++|++++--. +. |+++. ++.|++|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~--~~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN--GR-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET--TE-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC--CE-EEEee-cCEEEEEEccC
Confidence 46777762 1 77999999874 22 2222 2467888888763 44 44443 58899999998
Q ss_pred ce-EEEeecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe
Q 001319 878 DE-VKSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 955 (1101)
Q Consensus 878 ~~-~~~~~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 955 (1101)
.+ ....-.- ....+.++... +.+++.|.....|.++..+.... .. ........+..++++.|-+++..+++++
T Consensus 117 ~~~l~~~~~~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~~~~--~l-~~va~d~~~~~v~~~~~l~d~~~~i~~D 191 (321)
T PF03178_consen 117 SKTLLKKAFYDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDEENN--KL-ILVARDYQPRWVTAAEFLVDEDTIIVGD 191 (321)
T ss_dssp TSSEEEEEEE-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEETTTE---E-EEEEEESS-BEEEEEEEE-SSSEEEEEE
T ss_pred cccchhhheecceEEEEEEecc--ccEEEEEEcccCEEEEEEEccCC--EE-EEEEecCCCccEEEEEEecCCcEEEEEc
Confidence 87 4433221 22245555554 66999999888899886554111 01 1111122235688888886666666665
Q ss_pred -CCeEEEEEcCC-------c----eeeeEeccCCCCCCCEEEE---EEcc--CCC------EEEEEeCCCcEEEE
Q 001319 956 -ETQLAIYDASK-------M----ERIRQWTPQDALSAPISCA---VYSC--NSQ------LVFATFCDGNIGVF 1007 (1101)
Q Consensus 956 -d~~i~v~d~~~-------~----~~~~~~~~~~~h~~~v~~v---~~s~--dg~------~l~s~~~dg~i~vw 1007 (1101)
+|.+.++.... + ..+..+.. ...|+++ ++.| .+. .++.++.+|.|.+.
T Consensus 192 ~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~l----g~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 192 KDGNLFVLRYNPEIPNSRDGDPKLERISSFHL----GDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp TTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-----SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCeEEEEEECCCCcccccccccceeEEEEEC----CCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 89999988762 1 12333333 5678888 5555 222 37778889998844
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.25 Score=54.56 Aligned_cols=84 Identities=12% Similarity=0.222 Sum_probs=61.9
Q ss_pred CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC-----------------EEE
Q 001319 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-----------------HFL 601 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-----------------~l~ 601 (1101)
..+.+++.+|++++.++. |.-|.|.++|+.++..++.++|..+..+.-+.....+. +|+
T Consensus 308 R~~~~i~~sP~~~laA~t----DslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~Lv 383 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVT----DSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLV 383 (415)
T ss_pred ceEEEEEECCCCCEEEEE----cCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEE
Confidence 357889999998877774 35789999999999999999998775544333322211 222
Q ss_pred -EEeCCCcEEEEECCCCeeeEeeccC
Q 001319 602 -AVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 602 -~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
-+-.-|.|.||.++.|..+..+...
T Consensus 384 IyaprRg~lEvW~~~~g~Rv~a~~v~ 409 (415)
T PF14655_consen 384 IYAPRRGILEVWSMRQGPRVAAFNVG 409 (415)
T ss_pred EEeccCCeEEEEecCCCCEEEEEEeC
Confidence 3567899999999999888777653
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.12 Score=55.32 Aligned_cols=225 Identities=15% Similarity=0.152 Sum_probs=126.2
Q ss_pred CCCCeEEEEcCCeEEEEECC-CceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe---------
Q 001319 814 KNDSYVMSATGGKISLFNMM-TFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK--------- 883 (1101)
Q Consensus 814 ~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~--------- 883 (1101)
..++.|+.|.++.+.+++.. ......... ...|..+...+ +-+.|++-+ |+.++++++..-.....
T Consensus 5 ~~~~~L~vGt~~Gl~~~~~~~~~~~~~i~~--~~~I~ql~vl~-~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~ 80 (275)
T PF00780_consen 5 SWGDRLLVGTEDGLYVYDLSDPSKPTRILK--LSSITQLSVLP-ELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKS 80 (275)
T ss_pred cCCCEEEEEECCCEEEEEecCCccceeEee--cceEEEEEEec-ccCEEEEEc-CCccEEEEchhhcccccccccccccc
Confidence 45778888885449999983 333333332 23499999999 555555554 59999999886443321
Q ss_pred -----eccCCCCeeEEE--EcCCCCEEEEEeCCCcEEEEECCCCcc---ccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 884 -----LKGHQKRITGLA--FSTSLNILVSSGADAQLCVWSIDTWEK---RKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 884 -----~~~h~~~V~~l~--~s~d~~~l~s~s~Dg~v~lwd~~~~~~---~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
-......+...+ -...+...+.....+.|.+|....... .....+... ..+..++|. +..+++
T Consensus 81 ~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp-----~~~~~i~~~--~~~i~v 153 (275)
T PF00780_consen 81 RSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLP-----DPPSSIAFL--GNKICV 153 (275)
T ss_pred ccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcC-----CCcEEEEEe--CCEEEE
Confidence 011223344444 112333333344455888888776321 122222221 577888888 777888
Q ss_pred EeCCeEEEEEcCCceeeeEeccCCC---------CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcC
Q 001319 954 VHETQLAIYDASKMERIRQWTPQDA---------LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1024 (1101)
Q Consensus 954 ~~d~~i~v~d~~~~~~~~~~~~~~~---------h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1024 (1101)
+..+...+.|+.++.....+..... ...++..+... ++.+|++-. . +-+|=-..|+... -.
T Consensus 154 ~~~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~Ll~~~--~-~g~fv~~~G~~~r-~~----- 223 (275)
T PF00780_consen 154 GTSKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS-DNEFLLCYD--N-IGVFVNKNGEPSR-KS----- 223 (275)
T ss_pred EeCCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-CceEEEEec--c-eEEEEcCCCCcCc-cc-----
Confidence 8888899999998776555533221 12344455544 456666532 2 3333333444322 00
Q ss_pred CCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1025 SPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1025 ~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.+.+.. .+.++++.. .+|+..+. +.|-||++.+++
T Consensus 224 --~i~W~~---~p~~~~~~~---pyli~~~~-~~iEV~~~~~~~ 258 (275)
T PF00780_consen 224 --TIQWSS---APQSVAYSS---PYLIAFSS-NSIEVRSLETGE 258 (275)
T ss_pred --EEEcCC---chhEEEEEC---CEEEEECC-CEEEEEECcCCc
Confidence 001112 234566543 25555555 559999999998
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0023 Score=70.41 Aligned_cols=94 Identities=14% Similarity=0.173 Sum_probs=77.8
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKR 923 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~ 923 (1101)
...+.-+.|+| .-.++|++..+|.|.+..+. .+.+..+.-|...++ +++|.|||+.||.|-.||+|++-|+.++..+
T Consensus 20 ~~~i~~~ewnP-~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l 97 (665)
T KOG4640|consen 20 PINIKRIEWNP-KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRL 97 (665)
T ss_pred ccceEEEEEcC-ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCce
Confidence 34578899999 88999999999999999998 777888887777777 9999999999999999999999999998876
Q ss_pred cceEEeecCCCCCCCcceEEEc
Q 001319 924 KSVTIHIPAGKTPTGDTRVQFN 945 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~~~~s 945 (1101)
....... ...+..+.|+
T Consensus 98 ~~~~~s~-----e~~is~~~w~ 114 (665)
T KOG4640|consen 98 VSFLFSV-----ETDISKGIWD 114 (665)
T ss_pred ecccccc-----ccchheeecc
Confidence 6532111 1556677776
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=97.07 E-value=0.11 Score=52.74 Aligned_cols=198 Identities=14% Similarity=0.149 Sum_probs=116.1
Q ss_pred CCEeEEEecCCCCeEEEEc-CC--eEEEEECCCceEEEEeeCCCC-CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 805 EAVPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
.....+.|..+|.++-+.+ -| .|+.+|+.+++......-... ---.++.. +.++....-.++...+||..+-+.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl~~ 122 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTLKK 122 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE--TTEEEEEESSSSEEEEEETTTTEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE--CCEEEEEEecCCeEEEEccccceE
Confidence 3445688877888777665 44 599999999998776654332 12234444 345555666789999999999998
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
+.++. ..+.-..|+ .|++.|+.......+.++|..+.+......
T Consensus 123 ~~~~~-y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~--------------------------------- 166 (264)
T PF05096_consen 123 IGTFP-YPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQ--------------------------------- 166 (264)
T ss_dssp EEEEE--SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE---------------------------------
T ss_pred EEEEe-cCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEE---------------------------------
Confidence 88875 345667777 466667766666779999988755433221
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccC---CCCccce
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN---GSQTVYP 1037 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~---h~~~~~~ 1037 (1101)
|.+ .+..+ ..+.-+.+- +|...|=.-....|..-|..+|+....+....-....-.. +....-.
T Consensus 167 V~~--~g~pv----------~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVL 233 (264)
T PF05096_consen 167 VTD--NGRPV----------SNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVL 233 (264)
T ss_dssp -EE--TTEE-------------EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-E
T ss_pred EEE--CCEEC----------CCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCee
Confidence 211 11221 123334443 5665555556667888899999888877643322110000 1111223
Q ss_pred EEEEEecCCCCEEEEE
Q 001319 1038 LVVAAHPLEPNQFAIG 1053 (1101)
Q Consensus 1038 ~~l~~~p~d~~~l~s~ 1053 (1101)
.+++|.|..+++++||
T Consensus 234 NGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 234 NGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEEEETTTTEEEEEE
T ss_pred EeEeEeCCCCEEEEEe
Confidence 5899999777777777
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.76 Score=50.95 Aligned_cols=288 Identities=13% Similarity=0.145 Sum_probs=159.4
Q ss_pred CcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-----CCCeEEEE
Q 001319 748 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-----NDSYVMSA 822 (1101)
Q Consensus 748 ~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-----dg~~la~~ 822 (1101)
+...|++|+..|.+++|+-......+. ..++... ...+|..+..-. +...||+-
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~~----------------~lllE~~-----l~~PILqv~~G~F~s~~~~~~LaVL 94 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQPE----------------DLLLETQ-----LKDPILQVECGKFVSGSEDLQLAVL 94 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCCc----------------cEEEEEe-----cCCcEEEEEeccccCCCCcceEEEe
Confidence 346788999999999997533322211 1112211 445666655422 33466666
Q ss_pred cCCeEEEEECC--Cce-------EEEEeeCCCC--CeeEEEEecC----CCCEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 823 TGGKISLFNMM--TFK-------VMTTFMSPPP--ASTFLAFHPQ----DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 823 ~dg~i~vwd~~--~~~-------~~~~~~~~~~--~i~~l~~s~~----~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
.-.++.||.+. .|. .+..+..|.- ....+++-|- +..++.+-+.||++.+|+-+.-.....+.+
T Consensus 95 hP~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~- 173 (418)
T PF14727_consen 95 HPRKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD- 173 (418)
T ss_pred cCCEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-
Confidence 67788888762 111 1222333332 2333444332 247899999999999999766554444443
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCcc-------------------ccceEEeecCCCCCCCcceEEEcCCC
Q 001319 888 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK-------------------RKSVTIHIPAGKTPTGDTRVQFNADQ 948 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~-------------------~~~~~~~~~~~~~~~~v~~~~~s~d~ 948 (1101)
.--...+.|.+.-..+++++.+..|.-|....-.. .....-...-|...-.+..+.++...
T Consensus 174 ~llPgPl~Y~~~tDsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~ 253 (418)
T PF14727_consen 174 FLLPGPLCYCPRTDSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSE 253 (418)
T ss_pred CCCCcCeEEeecCCEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCC
Confidence 22334578888888999999998888887532100 00001111122211233344444455
Q ss_pred CEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEc----cCC---CEEEEEeCCCcEEEEeCCCCceeEeeCCC
Q 001319 949 VRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYS----CNS---QLVFATFCDGNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 949 ~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s----~dg---~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1021 (1101)
..+++-..+.+.+.+.. |........ + -.+.....|. .++ ..++.++.++++.||.=.+...-+.+.
T Consensus 254 ~~IvvLger~Lf~l~~~-G~l~~~krL-d--~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d~~L~WsA~l~-- 327 (418)
T PF14727_consen 254 SDIVVLGERSLFCLKDN-GSLRFQKRL-D--YNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYEDTTLVWSAQLP-- 327 (418)
T ss_pred ceEEEEecceEEEEcCC-CeEEEEEec-C--CceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeCCeEEEecCCC--
Confidence 55666666677777664 443333222 1 1111111222 122 248889999999999866554444332
Q ss_pred CcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCccccC
Q 001319 1022 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVS 1074 (1101)
Q Consensus 1022 ~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~~~ 1074 (1101)
..++.+ .++..+.-..+|++-+++|.+.+--+-|.-.....+
T Consensus 328 ----------~~PVal-~v~~~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p 369 (418)
T PF14727_consen 328 ----------HVPVAL-SVANFNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVP 369 (418)
T ss_pred ----------CCCEEE-EecccCCCCceEEEEcCCCcEEEEEeCCCCccccCC
Confidence 333432 333333347899999999999998887755434333
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0024 Score=70.28 Aligned_cols=93 Identities=19% Similarity=0.403 Sum_probs=71.2
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEE-EEEEccCCCEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS-RVAWSPDGNYVGV 423 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~-~~~~spdg~~las 423 (1101)
..|.-+.|+|.-. |+|.+..+|.|.+..++ .+.+ |+ +.-|...++ +++|.|||+.||+
T Consensus 21 ~~i~~~ewnP~~d-LiA~~t~~gelli~R~n-~qRl-------wt------------ip~p~~~v~~sL~W~~DGkllaV 79 (665)
T KOG4640|consen 21 INIKRIEWNPKMD-LIATRTEKGELLIHRLN-WQRL-------WT------------IPIPGENVTASLCWRPDGKLLAV 79 (665)
T ss_pred cceEEEEEcCccc-hhheeccCCcEEEEEec-ccee-------Ee------------ccCCCCccceeeeecCCCCEEEE
Confidence 4788899999877 88999999999999887 3333 32 333555565 9999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEe
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFA 460 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s 460 (1101)
|-.||+|++-|+++|..+... ...-...|.++-|.
T Consensus 80 g~kdG~I~L~Dve~~~~l~~~--~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 80 GFKDGTIRLHDVEKGGRLVSF--LFSVETDISKGIWD 114 (665)
T ss_pred EecCCeEEEEEccCCCceecc--ccccccchheeecc
Confidence 999999999999998766532 12234567777775
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.64 Score=49.15 Aligned_cols=151 Identities=18% Similarity=0.227 Sum_probs=81.4
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeE-EEEECCC--ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee-cc
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKI-SLFNMMT--FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VD 878 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i-~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~-~~ 878 (1101)
....+..+..++||++++++..|.+ .-||.-. .+.... .....|..+.|.| ++.+.+++ ..|.|+.=+.. ..
T Consensus 143 ~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r--~~~~riq~~gf~~-~~~lw~~~-~Gg~~~~s~~~~~~ 218 (302)
T PF14870_consen 143 TSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNR--NSSRRIQSMGFSP-DGNLWMLA-RGGQIQFSDDPDDG 218 (302)
T ss_dssp ----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE----SSS-EEEEEE-T-TS-EEEEE-TTTEEEEEE-TTEE
T ss_pred CcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEcc--CccceehhceecC-CCCEEEEe-CCcEEEEccCCCCc
Confidence 4567888999999999999997764 5677542 233322 2357899999999 77766544 78888887622 22
Q ss_pred eEEEe----eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE
Q 001319 879 EVKSK----LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 954 (1101)
Q Consensus 879 ~~~~~----~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 954 (1101)
+.-.. ...-.-.+..++|.+++...++|+. |++ +...+.|+. ..... .....+.....+.|.++.+-++.|
T Consensus 219 ~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGkt--W~~~~-~~~~~~~n~~~i~f~~~~~gf~lG 293 (302)
T PF14870_consen 219 ETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKT--WQKDR-VGENVPSNLYRIVFVNPDKGFVLG 293 (302)
T ss_dssp EEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS---EE-G-GGTTSSS---EEEEEETTEEEEE-
T ss_pred cccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCcc--ceECc-cccCCCCceEEEEEcCCCceEEEC
Confidence 21111 1112234789999999877776664 433 334444431 11111 111222678899999888999999
Q ss_pred eCCeEEEE
Q 001319 955 HETQLAIY 962 (1101)
Q Consensus 955 ~d~~i~v~ 962 (1101)
.+|.|--|
T Consensus 294 ~~G~ll~~ 301 (302)
T PF14870_consen 294 QDGVLLRY 301 (302)
T ss_dssp STTEEEEE
T ss_pred CCcEEEEe
Confidence 99887655
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.72 Score=48.79 Aligned_cols=158 Identities=11% Similarity=0.073 Sum_probs=82.0
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC-CCCc
Q 001319 843 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI-DTWE 921 (1101)
Q Consensus 843 ~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~-~~~~ 921 (1101)
...+.+..+..++ ++++++++..-.-..-||--...-...-..-..+|.+|.|+|++...+.+ ..|.|++=+. ...+
T Consensus 142 ~~~gs~~~~~r~~-dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~ 219 (302)
T PF14870_consen 142 ETSGSINDITRSS-DGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGE 219 (302)
T ss_dssp S----EEEEEE-T-TS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEE
T ss_pred CCcceeEeEEECC-CCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcc
Confidence 3456788888888 89988887654444566643211122222346789999999998776644 8888888772 2211
Q ss_pred cccceEEeecCC-CCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 922 KRKSVTIHIPAG-KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 922 ~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
. ........ ...-.+..++|.+++...+++..+.+ +...+.|+.=..-.....-......|.|.++.+-++.| .
T Consensus 220 ~---w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 220 T---WSEPIIPIKTNGYGILDLAYRPPNEIWAVGGSGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp E---E---B-TTSS--S-EEEEEESSSS-EEEEESTT-E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred c---cccccCCcccCceeeEEEEecCCCCEEEEeCCccE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 1 00111111 11134788999999999998887754 44555555444433222225678999998776655555 5
Q ss_pred CCcEEEE
Q 001319 1001 DGNIGVF 1007 (1101)
Q Consensus 1001 dg~i~vw 1007 (1101)
+|.|.-|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 8877655
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=1.4 Score=53.47 Aligned_cols=241 Identities=10% Similarity=0.035 Sum_probs=120.2
Q ss_pred cEEEEEEecCCceEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+..+.+||||++|+.+.+.+| .|++-|+.+|+.+.. .+.+ .-..++|++|++.|
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~------------------~i~~---~~~~~~w~~D~~~~ 186 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE------------------LLDN---VEPSFVWANDSWTF 186 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc------------------cccC---cceEEEEeeCCCEE
Confidence 5778899999997655433333 688999988764321 1111 11569999999988
Q ss_pred EEEECC------CeEEEEeecCC--cccccceeeecccCcEE-EEEEecCCCceEEEEec-CCceEEEEE--c-CCceeE
Q 001319 422 GVAFTK------HLIQLYSYAGS--NDLRQHSQIDAHVGAVN-DLAFAYPNKLLCVVTCG-DDKLIKVWE--L-SGRKLF 488 (1101)
Q Consensus 422 as~~~d------~~i~vwd~~~~--~~~~~~~~l~~h~~~V~-~l~~s~d~~~~~l~s~~-~d~~v~iwd--~-~~~~~~ 488 (1101)
+....+ ..|..+++.++ +... .+........ .+..+.|++.+++.+.+ .++.+.+++ . ++....
T Consensus 187 ~y~~~~~~~~~~~~v~~h~lgt~~~~d~l---v~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~ 263 (686)
T PRK10115 187 YYVRKHPVTLLPYQVWRHTIGTPASQDEL---VYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFV 263 (686)
T ss_pred EEEEecCCCCCCCEEEEEECCCChhHCeE---EEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceE
Confidence 776542 36788888887 2222 2333333333 33334478753322222 345788888 2 344222
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccC-C--eEEEEecCCCCe-eeeccC-CCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAID-G--KIKAWLYDTMGS-RVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-~--~i~~wd~~~~~~-~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
.+..-.+....+. +. .+.+.+....+ . .|...++..... ...+.. ....+..+.+. +++|+.... .++.
T Consensus 264 ~~~~~~~~~~~~~-~~--~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~--~~~l~~~~~-~~g~ 337 (686)
T PRK10115 264 FLPRRKDHEYSLD-HY--QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF--TDWLVVEER-QRGL 337 (686)
T ss_pred EEECCCCCEEEEE-eC--CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE--CCEEEEEEE-eCCE
Confidence 2222222222222 22 12233332221 2 343344442121 222222 22367777776 445554433 2345
Q ss_pred ceEEEEeCCCCeeEEEec-ccCCcceEEEEEe--CCCC-EEEEEe---CCCcEEEEECCCCe
Q 001319 564 SFLVEWNESEGTIKRTYA-GFRKKSNGVVQFD--TTQN-HFLAVG---EDSQIKFWDMDNVN 618 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~-~~~~~~v~~~~~~--~~~~-~l~~~~---~dg~i~iwd~~~~~ 618 (1101)
..+.+++..++. +..+. .... .+..+.++ +++. .+++.+ .-+.++.+|+.+++
T Consensus 338 ~~l~~~~~~~~~-~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~~~~ 397 (686)
T PRK10115 338 TSLRQINRKTRE-VIGIAFDDPA-YVTWIAYNPEPETSRLRYGYSSMTTPDTLFELDMDTGE 397 (686)
T ss_pred EEEEEEcCCCCc-eEEecCCCCc-eEeeecccCCCCCceEEEEEecCCCCCEEEEEECCCCc
Confidence 567777765443 33332 1111 22223344 3334 333332 45778888887764
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.0025 Score=43.44 Aligned_cols=39 Identities=33% Similarity=0.567 Sum_probs=34.4
Q ss_pred ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001319 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 878 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
++....+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 345666778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.34 Score=53.50 Aligned_cols=88 Identities=17% Similarity=0.244 Sum_probs=57.5
Q ss_pred EEEecCCCCeEEEEcCCeEEE----EECC-----CceEEEEee----CCC-CCeeEEEEecC----------CCCEEEEE
Q 001319 809 CIALSKNDSYVMSATGGKISL----FNMM-----TFKVMTTFM----SPP-PASTFLAFHPQ----------DNNIIAIG 864 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~dg~i~v----wd~~-----~~~~~~~~~----~~~-~~i~~l~~s~~----------~~~~la~g 864 (1101)
.++.+|++.++|.+...++.+ |+.. .+....... ... ..|+++.+-|- |...+++|
T Consensus 6 ~isls~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 6 SISLSPDGDLLAIARGQRLVILTSKWDSSRKGENENTYSISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred eEEecCCCCEEEEEcCCEEEEEEeeccccccCCCCCeEEEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 578899999999998665433 4331 112222211 111 46777665441 46889999
Q ss_pred eCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
..+|.|++|.- +|.++..-.-|..+|..+.+.
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~ 117 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCR 117 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEec
Confidence 99999999986 566665555677788777764
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.068 Score=63.41 Aligned_cols=141 Identities=14% Similarity=0.127 Sum_probs=93.7
Q ss_pred CCEEEEE-ECCCeEEEEeecCCcccccceeeecccCc-EEEEEEecCCCc-----eEEEEecCCceEEEEE--cCCceeE
Q 001319 418 GNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGA-VNDLAFAYPNKL-----LCVVTCGDDKLIKVWE--LSGRKLF 488 (1101)
Q Consensus 418 g~~las~-~~d~~i~vwd~~~~~~~~~~~~l~~h~~~-V~~l~~s~d~~~-----~~l~s~~~d~~v~iwd--~~~~~~~ 488 (1101)
.++|+.- .....|+-.|++.|+.+. ++..|... |.. |.|+.+. --.+.|-.+..+..|| ..|..+.
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~---eW~~~~~~~v~~--~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVE---EWKVHDDIPVVD--IAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEE---EeecCCCcceeE--ecccccccccCCCceEEEECCCceEEeccCCCCCcee
Confidence 3444433 345679999999999877 56666543 544 4443220 0245666788999999 5554332
Q ss_pred Eeec----CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 489 NFEG----HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 489 ~~~~----h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
.-.. ......|++-+. +| +||+|+.+|.||+||--.......+.+-+.+|..+..+.||+++++.+ +.
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt~--~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-----~t 639 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATTE--DG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-----KT 639 (794)
T ss_pred eccccccccCCCceEEEecC--Cc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-----cc
Confidence 2112 233466666543 43 899999999999998544344445556678999999999999998876 66
Q ss_pred eEEEEeC
Q 001319 565 FLVEWNE 571 (1101)
Q Consensus 565 ~i~iwd~ 571 (1101)
.|.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7888875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=96.77 E-value=2.1 Score=51.81 Aligned_cols=203 Identities=10% Similarity=0.079 Sum_probs=116.2
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccC------cEEEEEEec----------------CCCceEEEEecCCc
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG------AVNDLAFAY----------------PNKLLCVVTCGDDK 475 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~------~V~~l~~s~----------------d~~~~~l~s~~~d~ 475 (1101)
+..|..++.++.|.-.|.++|+.+-+... ..... ..+.+++-. .+. .++.++.|+
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~-~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~--rV~~~T~Dg 270 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDP-KLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCAR--RIILPTSDA 270 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcC-CCCcccccccccccceEEecCCcccccccccccccccCC--EEEEecCCC
Confidence 45666667777788888888775432211 00000 012233321 233 467788899
Q ss_pred eEEEEE-cCCceeEEeecCCcCeE-------------EEecccCCCccEEEEecc----------CCeEEEEecCCCCee
Q 001319 476 LIKVWE-LSGRKLFNFEGHEAPVY-------------SICPHHKENIQFIFSTAI----------DGKIKAWLYDTMGSR 531 (1101)
Q Consensus 476 ~v~iwd-~~~~~~~~~~~h~~~v~-------------~v~~~~~~~~~~l~s~~~----------d~~i~~wd~~~~~~~ 531 (1101)
.+.-.| .+|+.+..+.. .+.|. .+.-.|-=.+..++.++. +|.|+-+|.++++..
T Consensus 271 ~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~ 349 (764)
T TIGR03074 271 RLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALV 349 (764)
T ss_pred eEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEe
Confidence 999999 89998876632 22221 001001001235555542 688999999999988
Q ss_pred eeccCC---------CC--------ce-EEEEEccCCCEEEEeecC--------------CCCCceEEEEeCCCCeeEEE
Q 001319 532 VDYDAP---------GH--------WC-TTMLYSADGSRLFSCGTS--------------KDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 532 ~~~~~~---------~~--------~v-~~~~~s~d~~~l~~~~~~--------------~~~~~~i~iwd~~~~~~~~~ 579 (1101)
..+... .. .+ ..+++.++...++....+ ..-.+.|.-.|.++|+..-.
T Consensus 350 W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk~~W~ 429 (764)
T TIGR03074 350 WAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGKERWV 429 (764)
T ss_pred eEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCceEEE
Confidence 765421 00 11 234555555555443210 11245677889999998877
Q ss_pred ecc-cCCc-------ceEEEEEeC-CCC---EEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 580 YAG-FRKK-------SNGVVQFDT-TQN---HFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 580 ~~~-~~~~-------~v~~~~~~~-~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
++. |++. ...-+.+.. +|+ .++.++.+|.+++.|.++|+.+...+
T Consensus 430 ~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 430 FQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred ecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 765 2210 111122332 453 78889999999999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.059 Score=63.42 Aligned_cols=198 Identities=11% Similarity=0.023 Sum_probs=101.4
Q ss_pred CCCEEEEEeCC------CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccccc
Q 001319 857 DNNIIAIGTED------STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA-----QLCVWSIDTWEKRKS 925 (1101)
Q Consensus 857 ~~~~la~g~~d------g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~lwd~~~~~~~~~ 925 (1101)
++.+.++|+.+ ..+..||..+++-...-.-....-...+..-+|+..+.||.++ ++..||..+.+....
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 66788888754 3477888776642211111111111122233678888888764 488899887543322
Q ss_pred eEEeecCCCCCCCcceEEEcCCCCEEEEEe-C-----------------------CeEEEEEcCCceeeeEeccCCCCCC
Q 001319 926 VTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E-----------------------TQLAIYDASKMERIRQWTPQDALSA 981 (1101)
Q Consensus 926 ~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d-----------------------~~i~v~d~~~~~~~~~~~~~~~h~~ 981 (1101)
..+.... .....+ .-+|+..++|+ + ..+..||..+.+-...-.... .
T Consensus 383 ~~mp~~r----~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~---~ 453 (557)
T PHA02713 383 PDMPIAL----SSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT---G 453 (557)
T ss_pred CCCCccc----ccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc---c
Confidence 1111111 111122 23566666553 2 247778877655432222211 1
Q ss_pred CEEEEEEccCCCEEEEEeCC------CcEEEEeCCC-CceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001319 982 PISCAVYSCNSQLVFATFCD------GNIGVFDADT-LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1054 (1101)
Q Consensus 982 ~v~~v~~s~dg~~l~s~~~d------g~i~vwd~~~-~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~ 1054 (1101)
....-+..-+|+..+.|+.+ ..+..||..+ .+...... .+.. .... +++-. ++.+.++||
T Consensus 454 r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~----m~~~-----r~~~--~~~~~--~~~iyv~Gg 520 (557)
T PHA02713 454 TIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT----TESR-----LSAL--HTILH--DNTIMMLHC 520 (557)
T ss_pred cccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc----cCcc-----cccc--eeEEE--CCEEEEEee
Confidence 11111223367777777654 2467899887 44332111 1101 1111 11111 689999999
Q ss_pred CCC--eEEEEeCCCCCCccccCCCCC
Q 001319 1055 TDG--SVKVMEPSESEGKWGVSPPVD 1078 (1101)
Q Consensus 1055 ~Dg--~v~iWd~~~~~~~~~~~~~~~ 1078 (1101)
.|| .+-.||+.+.+ |..-.|.-
T Consensus 521 ~~~~~~~e~yd~~~~~--W~~~~~~~ 544 (557)
T PHA02713 521 YESYMLQDTFNVYTYE--WNHICHQH 544 (557)
T ss_pred ecceeehhhcCccccc--ccchhhhc
Confidence 999 77788887776 76655543
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.66 E-value=1 Score=49.12 Aligned_cols=58 Identities=17% Similarity=0.200 Sum_probs=35.4
Q ss_pred CCEEEEEeCCCcEEEEECCCCeee-EeeccCCCC-CCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 597 QNHFLAVGEDSQIKFWDMDNVNIL-TSTDAEGGL-PNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~-~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
|.++++.-..+.|....+..+..+ .....-... ..+..+++.|||.+.++...+|.|.
T Consensus 271 g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 271 GDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred CcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 345555555677887777644332 222211222 2678999999999888888888764
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.22 Score=58.45 Aligned_cols=237 Identities=14% Similarity=0.144 Sum_probs=128.6
Q ss_pred cCCCCeEEEEc-C------CeEEEEECCCceEEEEeeCC-CCCeeEEEEecCCCCEEEEEeCC-C-----cEEEEEeecc
Q 001319 813 SKNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTED-S-----TIHIYNVRVD 878 (1101)
Q Consensus 813 s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~la~g~~d-g-----~v~iwd~~~~ 878 (1101)
+..+.+++.|+ . ..+..||..+++-.....-. ...-.++++. ++.+.++|+.| | ++..||..++
T Consensus 282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~~lYv~GG~~~~~~~l~~ve~YD~~~~ 359 (571)
T KOG4441|consen 282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NGKLYVVGGYDSGSDRLSSVERYDPRTN 359 (571)
T ss_pred CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE--CCEEEEEccccCCCcccceEEEecCCCC
Confidence 33455666665 3 34888998876443322221 2223445554 56888999988 3 5777887765
Q ss_pred eEEE--eeccCCCCeeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEE
Q 001319 879 EVKS--KLKGHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 879 ~~~~--~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 951 (1101)
+=.. .+.......... .-+|...|+||.||. |..||..+.+......... ..-..-...-+|+..
T Consensus 360 ~W~~~a~M~~~R~~~~v~--~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~------~r~~~gv~~~~g~iY 431 (571)
T KOG4441|consen 360 QWTPVAPMNTKRSDFGVA--VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT------RRSGHGVAVLGGKLY 431 (571)
T ss_pred ceeccCCccCccccceeE--EECCEEEEEeccccccccccEEEecCCCCcccccCCCCc------ceeeeEEEEECCEEE
Confidence 4222 221111111111 226788899999964 7778887755432221111 111122233356655
Q ss_pred EEEe-C------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCc-----EEEEeCCCCceeEeeC
Q 001319 952 LVVH-E------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN-----IGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 952 ~~~~-d------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~-----i~vwd~~~~~~~~~~~ 1019 (1101)
++|+ + ..+..||..+..-...-..... ..... + -.-++++.+.|+.|+. |..||..+.+....-.
T Consensus 432 i~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g-~-a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 432 IIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFG-V-AVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred EEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccce-E-EEECCEEEEECCccCCCccceEEEEcCCCCceeEccc
Confidence 5543 2 4688899887665433332210 11111 2 2336788888887763 7778888766544311
Q ss_pred CCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCe-----EEEEeCCCCCCccccCCCC
Q 001319 1020 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGS-----VKVMEPSESEGKWGVSPPV 1077 (1101)
Q Consensus 1020 ~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~-----v~iWd~~~~~~~~~~~~~~ 1077 (1101)
. . . ......+ .+ .++.+.+.|+.||. |-.||..+.+ |....+.
T Consensus 509 m-~---~----~rs~~g~-~~----~~~~ly~vGG~~~~~~l~~ve~ydp~~d~--W~~~~~~ 556 (571)
T KOG4441|consen 509 M-T---S----PRSAVGV-VV----LGGKLYAVGGFDGNNNLNTVECYDPETDT--WTEVTEP 556 (571)
T ss_pred C-c---c----ccccccE-EE----ECCEEEEEecccCccccceeEEcCCCCCc--eeeCCCc
Confidence 0 0 0 0111111 11 16788999999874 7788877766 7665553
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=2.1 Score=51.90 Aligned_cols=198 Identities=8% Similarity=-0.011 Sum_probs=97.6
Q ss_pred ccEEEEEEccCCCEEEEEEC-----CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC-----ce
Q 001319 407 ISVSRVAWSPDGNYVGVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KL 476 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~-----d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-----~~ 476 (1101)
-.+..+.|||||++||.+.. ...|++-|+.+|+.+.. .+.+ . -..++|++|++. ++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~--~i~~-~--~~~~~w~~D~~~-~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPE--LLDN-V--EPSFVWANDSWT-FYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCc--cccC-c--ceEEEEeeCCCE-EEEEEecCCCCCCCE
Confidence 35778899999999997633 23589999998864321 1222 1 146999999986 33333322 35
Q ss_pred EEEEE-cCC--ceeEEeecCCcCeEEEecccCCCccEEEEecc---CCeEEEEecCC--CCeeeeccCCCCceEEEEEcc
Q 001319 477 IKVWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDT--MGSRVDYDAPGHWCTTMLYSA 548 (1101)
Q Consensus 477 v~iwd-~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~---d~~i~~wd~~~--~~~~~~~~~~~~~v~~~~~s~ 548 (1101)
|..++ -++ +-...+........-..+. ..++++++..+. ++.+.+++.+. ......+.........+. ..
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~-s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHK-TTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD-HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEE-cCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE-eC
Confidence 77777 555 2223333323333311222 324555544333 35688888532 222222222222222222 22
Q ss_pred CCCEEEEeecCCCCCceEEEEeCC-CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 549 DGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
+..+...+..+.....|...++. .++....+....+..+..+.+.. +..+++...+|.-+++-+
T Consensus 279 -~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 279 -QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQI 343 (686)
T ss_pred -CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEE
Confidence 23333333222234445555555 23333333332333566677762 234444556666555443
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.81 Score=47.68 Aligned_cols=152 Identities=14% Similarity=0.093 Sum_probs=90.6
Q ss_pred CeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE-CCCCcccc
Q 001319 847 ASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS-IDTWEKRK 924 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd-~~~~~~~~ 924 (1101)
.+.+.++++ ++..+|... .++.-.+|-...+.....+. -...+....|++++...+....+...+++. ..+++..
T Consensus 25 ~~~s~AvS~-dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~- 101 (253)
T PF10647_consen 25 DVTSPAVSP-DGSRVAAVSEGDGGRSLYVGPAGGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE- 101 (253)
T ss_pred cccceEECC-CCCeEEEEEEcCCCCEEEEEcCCCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce-
Confidence 688999999 777665554 33334444434333333321 223788899999988777777677777774 3333322
Q ss_pred ceEEeecCCCCCCCcceEEEcCCCCEEEEEe----CCeEEEEEcC---Cc---eeeeEeccCCCCCCCEEEEEEccCCCE
Q 001319 925 SVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAIYDAS---KM---ERIRQWTPQDALSAPISCAVYSCNSQL 994 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----d~~i~v~d~~---~~---~~~~~~~~~~~h~~~v~~v~~s~dg~~ 994 (1101)
...+...... ..|..+.+||||..++... ++.|.+--+. .+ ...............++.+.|.+++.+
T Consensus 102 ~~~v~~~~~~--~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L 179 (253)
T PF10647_consen 102 PVEVDWPGLR--GRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTL 179 (253)
T ss_pred eEEecccccC--CceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEE
Confidence 1122221111 2799999999999999843 6777776543 23 111111111112568999999999998
Q ss_pred EEEEeCCCc
Q 001319 995 VFATFCDGN 1003 (1101)
Q Consensus 995 l~s~~~dg~ 1003 (1101)
++.+...+.
T Consensus 180 ~V~~~~~~~ 188 (253)
T PF10647_consen 180 VVLGRSAGG 188 (253)
T ss_pred EEEeCCCCC
Confidence 777654443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=96.56 E-value=1.2 Score=48.57 Aligned_cols=236 Identities=16% Similarity=0.166 Sum_probs=120.1
Q ss_pred EeEEEecCCCCeEEEEcCCeEEEEECCCceE---EEEee----CCCCCeeEEEEecC---CCCEEEEEeCC--------C
Q 001319 807 VPCIALSKNDSYVMSATGGKISLFNMMTFKV---MTTFM----SPPPASTFLAFHPQ---DNNIIAIGTED--------S 868 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~---~~~~~----~~~~~i~~l~~s~~---~~~~la~g~~d--------g 868 (1101)
.+.|+|.|||+++++-..|+|++++ ..+.. +..+. ........++++|+ ++.+.++.+.. .
T Consensus 4 P~~~a~~pdG~l~v~e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~~ 82 (331)
T PF07995_consen 4 PRSMAFLPDGRLLVAERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDNDN 82 (331)
T ss_dssp EEEEEEETTSCEEEEETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEEE
T ss_pred ceEEEEeCCCcEEEEeCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcce
Confidence 5789999999998887799999999 44443 22221 22345788999992 24444444421 2
Q ss_pred cEEEEEeecc-------eEE-Eeecc---CCCCeeEEEEcCCCCEEEEEeCCCc-------------EEEEECCCCcccc
Q 001319 869 TIHIYNVRVD-------EVK-SKLKG---HQKRITGLAFSTSLNILVSSGADAQ-------------LCVWSIDTWEKRK 924 (1101)
Q Consensus 869 ~v~iwd~~~~-------~~~-~~~~~---h~~~V~~l~~s~d~~~l~s~s~Dg~-------------v~lwd~~~~~~~~ 924 (1101)
.|.-|.+..+ +.+ ..+.. .......|+|.|||.+.++.+..+. |.-.+... +...
T Consensus 83 ~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~~~~~~~~~~~~~G~ilri~~dG-~~p~ 161 (331)
T PF07995_consen 83 RVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGGNDDNAQDPNSLRGKILRIDPDG-SIPA 161 (331)
T ss_dssp EEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TTTGGGGCSTTSSTTEEEEEETTS-SB-T
T ss_pred eeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCCCcccccccccccceEEEecccC-cCCC
Confidence 4444554433 111 12222 2334567999999987777765443 22222211 1000
Q ss_pred c----------eEEeecCCCCCCCcceEEEcCC-CCEEEE--EeCCeEEEEEcCCcee----------------------
Q 001319 925 S----------VTIHIPAGKTPTGDTRVQFNAD-QVRMLV--VHETQLAIYDASKMER---------------------- 969 (1101)
Q Consensus 925 ~----------~~~~~~~~~~~~~v~~~~~s~d-~~~l~~--~~d~~i~v~d~~~~~~---------------------- 969 (1101)
. ..+ ...+. .....++|+|. |.+.++ +.+..=.|..+..+..
T Consensus 162 dnP~~~~~~~~~~i-~A~Gl--RN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~~~~~~~~~~~~~~~ 238 (331)
T PF07995_consen 162 DNPFVGDDGADSEI-YAYGL--RNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEGGPKYSGPPIGDAPS 238 (331)
T ss_dssp TSTTTTSTTSTTTE-EEE----SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSSSCSTTSS-ECTGSS
T ss_pred CCccccCCCceEEE-EEeCC--CccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcCCCCCCCCccccccC
Confidence 0 000 00001 34557899999 776665 3333323332222211
Q ss_pred -------eeEeccCCCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCcc
Q 001319 970 -------IRQWTPQDALSAPISCAVYSC-------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1035 (1101)
Q Consensus 970 -------~~~~~~~~~h~~~v~~v~~s~-------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~ 1035 (1101)
+..+. +...++.+.|-. +|.++++.-..+.|....++.+..+..... .. .....
T Consensus 239 ~~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~--~~------~~~~~ 306 (331)
T PF07995_consen 239 CPGFVPPVFAYP----PHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEE--FL------GGFGG 306 (331)
T ss_dssp -TTS---SEEET----TT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEE--EC------TTSSS
T ss_pred CCCcCccceeec----CccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEE--cc------ccCCC
Confidence 11111 134556666643 455666666677788777765533222110 00 12223
Q ss_pred ceEEEEEecCCCCEEEEEECCCeEE
Q 001319 1036 YPLVVAAHPLEPNQFAIGLTDGSVK 1060 (1101)
Q Consensus 1036 ~~~~l~~~p~d~~~l~s~~~Dg~v~ 1060 (1101)
.++.+++.| |+.++++...+|+|.
T Consensus 307 r~~~v~~~p-DG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 307 RPRDVAQGP-DGALYVSDDSDGKIY 330 (331)
T ss_dssp -EEEEEEET-TSEEEEEE-TTTTEE
T ss_pred CceEEEEcC-CCeEEEEECCCCeEe
Confidence 567999999 799999888888874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.56 E-value=0.068 Score=45.89 Aligned_cols=102 Identities=15% Similarity=0.144 Sum_probs=64.6
Q ss_pred EEEEEEe---cCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 347 VISMDFH---PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 347 V~~v~fs---pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
|+++++. -||..-|++|+.|..|+||+=+ +.+.. -.-.+.|++++-... ..++.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~E--------------------i~e~~~v~~L~~~~~-~~F~Y 58 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAE--------------------ITETDKVTSLCSLGG-GRFAY 58 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEE--------------------EecccceEEEEEcCC-CEEEE
Confidence 5566654 4565567889999999999843 22221 113567888887766 66888
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEec---CCCceEEEEecCCceEE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~~~d~~v~ 478 (1101)
+..+|+|-+|+-... .. ..+. ...+.++++.. ||.. -|++|-.+|.|-
T Consensus 59 ~l~NGTVGvY~~~~R-lW----RiKS-K~~~~~~~~~D~~gdG~~-eLI~GwsnGkve 109 (111)
T PF14783_consen 59 ALANGTVGVYDRSQR-LW----RIKS-KNQVTSMAFYDINGDGVP-ELIVGWSNGKVE 109 (111)
T ss_pred EecCCEEEEEeCcce-ee----eecc-CCCeEEEEEEcCCCCCce-EEEEEecCCeEE
Confidence 999999999976431 11 1222 22355555543 3433 578888788764
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.52 E-value=0.044 Score=59.43 Aligned_cols=145 Identities=11% Similarity=0.084 Sum_probs=97.4
Q ss_pred EEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCC--E-----EEEEeCCCcEEEEECCCCccccceEEeecC
Q 001319 860 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN--I-----LVSSGADAQLCVWSIDTWEKRKSVTIHIPA 932 (1101)
Q Consensus 860 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~--~-----l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~ 932 (1101)
+|..+..-..++-.|+..|+.+.++.-|.. |+-+.+.|+.+ . -+.|-.|..|+-||..-...-.....+...
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kq 426 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQ 426 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccc
Confidence 344555557789999999999999987766 88888888754 1 234667888999998743221111111111
Q ss_pred CCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceee-eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 933 GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI-RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 933 ~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~-~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
-.......+.+-..+|..++.+.+|.|++||- .+..- ..+++. ..+|..|..+.||++|+..+ +.++.+-++.
T Consensus 427 y~~k~nFsc~aTT~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgL---G~~I~hVdvtadGKwil~Tc-~tyLlLi~t~ 500 (644)
T KOG2395|consen 427 YSTKNNFSCFATTESGYIVVGSLKGDIRLYDR-IGRRAKTALPGL---GDAIKHVDVTADGKWILATC-KTYLLLIDTL 500 (644)
T ss_pred cccccccceeeecCCceEEEeecCCcEEeehh-hhhhhhhccccc---CCceeeEEeeccCcEEEEec-ccEEEEEEEe
Confidence 11114556667777777666677999999998 44433 334333 89999999999999988665 6667666654
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.48 Score=49.36 Aligned_cols=146 Identities=12% Similarity=0.078 Sum_probs=90.6
Q ss_pred CCEeEEEecCCCCeEEEEc--CCe--EEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE-eecce
Q 001319 805 EAVPCIALSKNDSYVMSAT--GGK--ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN-VRVDE 879 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~--dg~--i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd-~~~~~ 879 (1101)
..+.+.++|+||+.+|... ++. ++++... ....... ....++.-.|++ ++.+.++...+...+++. ..+++
T Consensus 24 ~~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~-~g~~l~~PS~d~-~g~~W~v~~~~~~~~~~~~~~~g~ 99 (253)
T PF10647_consen 24 YDVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVL-TGGSLTRPSWDP-DGWVWTVDDGSGGVRVVRDSASGT 99 (253)
T ss_pred ccccceEECCCCCeEEEEEEcCCCCEEEEEcCC--Ccceeec-cCCccccccccC-CCCEEEEEcCCCceEEEEecCCCc
Confidence 3688999999999887765 444 5555543 3222221 233788889999 788777777677777774 23332
Q ss_pred EE-Eeecc--CCCCeeEEEEcCCCCEEEEEe---CCCcEEEEECCCCccc----cceEEeecCCCCCCCcceEEEcCCCC
Q 001319 880 VK-SKLKG--HQKRITGLAFSTSLNILVSSG---ADAQLCVWSIDTWEKR----KSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 880 ~~-~~~~~--h~~~V~~l~~s~d~~~l~s~s---~Dg~v~lwd~~~~~~~----~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
.. ..+.. -.+.|..+.+||||.++|... .++.|.+=-+.....- .......... ....+..+.|.+++.
T Consensus 100 ~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~-~~~~v~~v~W~~~~~ 178 (253)
T PF10647_consen 100 GEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPP-LLSDVTDVAWSDDST 178 (253)
T ss_pred ceeEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEeccc-ccCcceeeeecCCCE
Confidence 22 11211 112899999999999888765 3577777665432221 1111121111 125788999999999
Q ss_pred EEEEEe
Q 001319 950 RMLVVH 955 (1101)
Q Consensus 950 ~l~~~~ 955 (1101)
+++.+.
T Consensus 179 L~V~~~ 184 (253)
T PF10647_consen 179 LVVLGR 184 (253)
T ss_pred EEEEeC
Confidence 888754
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=96.44 E-value=1.9 Score=47.16 Aligned_cols=158 Identities=10% Similarity=0.037 Sum_probs=90.1
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV-KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 923 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~ 923 (1101)
...+..+.+.+ ++.+++++ ..|.++.-.-..++. ...-.+-...++++.+.++++.++++ ..|.+++=..+.|+.=
T Consensus 172 ~g~~~~i~~~~-~g~~v~~g-~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW 248 (334)
T PRK13684 172 AGVVRNLRRSP-DGKYVAVS-SRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESW 248 (334)
T ss_pred cceEEEEEECC-CCeEEEEe-CCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcc
Confidence 45688899998 77766555 456554321111221 11122334678999999998876654 5676653333433311
Q ss_pred cceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCc
Q 001319 924 KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1003 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~ 1003 (1101)
.. ...........+..+.+.+++..++++.++.+. ...+.++.-........-......+.|..+++.+++| ..|.
T Consensus 249 ~~--~~~~~~~~~~~l~~v~~~~~~~~~~~G~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G-~~G~ 324 (334)
T PRK13684 249 SK--PIIPEITNGYGYLDLAYRTPGEIWAGGGNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLG-QRGV 324 (334)
T ss_pred cc--ccCCccccccceeeEEEcCCCCEEEEcCCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEEC-CCce
Confidence 11 111111111356788999999888888777665 4555555444433211113467888888777766644 5888
Q ss_pred EEEEeC
Q 001319 1004 IGVFDA 1009 (1101)
Q Consensus 1004 i~vwd~ 1009 (1101)
|..|+-
T Consensus 325 il~~~~ 330 (334)
T PRK13684 325 LLRYVG 330 (334)
T ss_pred EEEecC
Confidence 877763
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.44 E-value=0.48 Score=51.41 Aligned_cols=237 Identities=14% Similarity=0.117 Sum_probs=107.8
Q ss_pred CcccEEEee-cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc---
Q 001319 748 SAVGLLALG-SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--- 823 (1101)
Q Consensus 748 ~~~~l~~~~-~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--- 823 (1101)
+.++|+..+ ..+.|.+.|+......+.-...... .++... . .-..-..+..-|+|+.++++-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~---------~ev~~k--~---g~s~PHT~Hclp~G~imIS~lGd~ 151 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEP---------EEVFEK--T---GLSRPHTVHCLPDGRIMISALGDA 151 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-H---------HHHHHH--H----EEEEEEEEE-SS--EEEEEEEET
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCH---------HHHHhh--c---CCCCCceeeecCCccEEEEeccCC
Confidence 345566666 5688999888765443322111110 000000 0 001111233346888887762
Q ss_pred C----CeEEEEECCCceEEEEeeCCCC---CeeEEEEecCCCCEEEEEe--------------------CCCcEEEEEee
Q 001319 824 G----GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT--------------------EDSTIHIYNVR 876 (1101)
Q Consensus 824 d----g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~--------------------~dg~v~iwd~~ 876 (1101)
+ |.+.++|-++.+.......... --..+-|.| ..+.+++.. ...++.+||+.
T Consensus 152 ~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qp-r~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~ 230 (461)
T PF05694_consen 152 DGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQP-RHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS 230 (461)
T ss_dssp TS-S--EEEEE-TTT--EEEE--SB-TT------EEEET-TTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETT
T ss_pred CCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcC-CCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECC
Confidence 2 4589999998888877654322 245667777 666666654 23589999999
Q ss_pred cceEEEeeccCC--CCeeEEEEcCC--CCEEEE-EeCCCcEEEE-ECCCCccccceEEeecCCC---------------C
Q 001319 877 VDEVKSKLKGHQ--KRITGLAFSTS--LNILVS-SGADAQLCVW-SIDTWEKRKSVTIHIPAGK---------------T 935 (1101)
Q Consensus 877 ~~~~~~~~~~h~--~~V~~l~~s~d--~~~l~s-~s~Dg~v~lw-d~~~~~~~~~~~~~~~~~~---------------~ 935 (1101)
+.+.++++.--. ..+..+.|..+ ..+=++ +.-..+|..| .-+.++......+.+.... .
T Consensus 231 ~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~ 310 (461)
T PF05694_consen 231 TRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAV 310 (461)
T ss_dssp TTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE
T ss_pred CCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccC
Confidence 999998886432 23566777654 333333 2333444444 3345544444444333211 0
Q ss_pred CCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCce---eeeEeccC-C------------CCCCCEEEEEEccCCCEEEE
Q 001319 936 PTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME---RIRQWTPQ-D------------ALSAPISCAVYSCNSQLVFA 997 (1101)
Q Consensus 936 ~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~---~~~~~~~~-~------------~h~~~v~~v~~s~dg~~l~s 997 (1101)
+.-++.+.+|.|.++|.++. .|.++.||+..-. ++.+.... . .-.+...-|..|-||+.|..
T Consensus 311 P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 311 PPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp ------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred CCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 24578999999999999976 8999999998633 33222211 0 01234477889999998886
Q ss_pred Ee
Q 001319 998 TF 999 (1101)
Q Consensus 998 ~~ 999 (1101)
.+
T Consensus 391 Tn 392 (461)
T PF05694_consen 391 TN 392 (461)
T ss_dssp E-
T ss_pred Ee
Confidence 54
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0092 Score=40.46 Aligned_cols=39 Identities=26% Similarity=0.461 Sum_probs=33.8
Q ss_pred ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 835 FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 835 ~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
+++...+..|...|.++.|.+ ++.++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~-~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSP-DGKYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECC-CCCEEEEecCCCeEEEcC
Confidence 355667778888999999999 778999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=96.22 E-value=0.4 Score=56.31 Aligned_cols=234 Identities=11% Similarity=0.026 Sum_probs=121.3
Q ss_pred cCCCEEEEEECC------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC------ceEEEEE-c
Q 001319 416 PDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD------KLIKVWE-L 482 (1101)
Q Consensus 416 pdg~~las~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d------~~v~iwd-~ 482 (1101)
..+..+++|+.+ ..+..||..+++-.. ...+. +...-.+++.. ++. +.++||.| .++..|| .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~-~a~m~-~~r~~~~~~~~-~~~--lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSS-LAPMP-SPRCRVGVAVL-NGK--LYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEee-cCCCC-cccccccEEEE-CCE--EEEEccccCCCcccceEEEecCC
Confidence 345566677666 358888888763221 11222 22223344444 445 78888888 3577888 5
Q ss_pred CCceeE--EeecCCcCeEEEecccCCCccEEEEeccCCe-----EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 483 SGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGK-----IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 483 ~~~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~-----i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
.++-.. .+...........+ +|.+.++|+.||. +-.||..+.+=...-......-..-...-+|+..++
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred CCceeccCCccCccccceeEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEE
Confidence 444221 12111111211211 5678888998864 666776554322222111211122223346777777
Q ss_pred eecCCCCC--ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCeeeEeeccCCC
Q 001319 556 CGTSKDGD--SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGG 628 (1101)
Q Consensus 556 ~~~~~~~~--~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~ 628 (1101)
||.+...+ ..+..||..+.+....-.-........++. -++...+.||.|+ +|..||..+.+....-.....
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~ 512 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSP 512 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccc
Confidence 77544332 578899998876554433322212222332 3456666777665 377888887766554322222
Q ss_pred CCCCCeeEEecCCCEEEEEEcCCc-----EEEEEcccc
Q 001319 629 LPNLPRLRFSKEGNLLAVTTADNG-----FKILANAIG 661 (1101)
Q Consensus 629 ~~~v~~v~~s~~g~~l~~~~~d~~-----i~iwd~~~~ 661 (1101)
...+..+. -++...++|+.||. |..||..+.
T Consensus 513 rs~~g~~~--~~~~ly~vGG~~~~~~l~~ve~ydp~~d 548 (571)
T KOG4441|consen 513 RSAVGVVV--LGGKLYAVGGFDGNNNLNTVECYDPETD 548 (571)
T ss_pred cccccEEE--ECCEEEEEecccCccccceeEEcCCCCC
Confidence 11122222 26677777776653 555555443
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.055 Score=58.73 Aligned_cols=143 Identities=12% Similarity=0.127 Sum_probs=98.2
Q ss_pred CCCEEE-EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEE-----EEecCCceEEEEE--cCCc-ee
Q 001319 417 DGNYVG-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV-----VTCGDDKLIKVWE--LSGR-KL 487 (1101)
Q Consensus 417 dg~~la-s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l-----~s~~~d~~v~iwd--~~~~-~~ 487 (1101)
+..+|+ ++.....++-.|++.|+.+. ++.-|.. |+-+.+.|+.+.--+ +.|-.|..|.-|| ..++ .+
T Consensus 344 dsnlil~~~~~~~~l~klDIE~GKIVe---EWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl 419 (644)
T KOG2395|consen 344 DSNLILMDGGEQDKLYKLDIERGKIVE---EWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKL 419 (644)
T ss_pred ccceEeeCCCCcCcceeeecccceeee---EeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCccee
Confidence 444444 44555668888999998877 5655655 888888887652111 3456788999999 5665 33
Q ss_pred EEeecCC----cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 488 FNFEGHE----APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 488 ~~~~~h~----~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
..-.+|+ ....|.+- .++| ++++||.+|.||+||--......-+.+-+.+|..+..+.||++++..+ +
T Consensus 420 ~~~q~kqy~~k~nFsc~aT--T~sG-~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-----~ 491 (644)
T KOG2395|consen 420 AVVQSKQYSTKNNFSCFAT--TESG-YIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-----K 491 (644)
T ss_pred eeeeccccccccccceeee--cCCc-eEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-----c
Confidence 3333332 23444443 3343 899999999999999744444456677788999999999999998776 6
Q ss_pred ceEEEEeC
Q 001319 564 SFLVEWNE 571 (1101)
Q Consensus 564 ~~i~iwd~ 571 (1101)
..+.+.++
T Consensus 492 tyLlLi~t 499 (644)
T KOG2395|consen 492 TYLLLIDT 499 (644)
T ss_pred cEEEEEEE
Confidence 67777764
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.15 E-value=1.5 Score=42.92 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=41.8
Q ss_pred EEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEE
Q 001319 810 IALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 863 (1101)
Q Consensus 810 ~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 863 (1101)
+++..+|.+.++.. .++|..+|..+|+.+.++.-+...|+++||--.+-.++.+
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yv 271 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYV 271 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEE
Confidence 45566788766665 7899999999999999999999999999996422234443
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.11 E-value=1.9 Score=44.12 Aligned_cols=121 Identities=13% Similarity=0.135 Sum_probs=85.6
Q ss_pred cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 535 DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 535 ~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+....+.++.|+|+.+.|++... ...-.++=..+|+.++++....-.....+.+..+|.++++--.++.++++.+
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n----~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~v 157 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTN----KPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTV 157 (316)
T ss_pred ccccccccceeeCCCcceEEEecC----CCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEE
Confidence 334445899999999999998874 4445556567789988877544334556788888877777778899999887
Q ss_pred CCCeeeEee-----cc---CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 615 DNVNILTST-----DA---EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 615 ~~~~~~~~~-----~~---~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
.....+... .. .........++|+|....|.++-.-.-+.||...
T Consensus 158 d~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~ 210 (316)
T COG3204 158 DADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT 210 (316)
T ss_pred cCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence 765322211 11 1113346789999999999988888888888765
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.10 E-value=0.44 Score=41.03 Aligned_cols=84 Identities=14% Similarity=0.141 Sum_probs=55.9
Q ss_pred EEEEEEec---CCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe
Q 001319 454 VNDLAFAY---PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS 530 (1101)
Q Consensus 454 V~~l~~s~---d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~ 530 (1101)
|+++++.. ||.. .|+.|+.|..|++|+.. ..+..+.. .+.|.+++-... ..++.+..+|+|-+|+- ...
T Consensus 2 V~al~~~d~d~dg~~-eLlvGs~D~~IRvf~~~-e~~~Ei~e-~~~v~~L~~~~~---~~F~Y~l~NGTVGvY~~--~~R 73 (111)
T PF14783_consen 2 VTALCLFDFDGDGEN-ELLVGSDDFEIRVFKGD-EIVAEITE-TDKVTSLCSLGG---GRFAYALANGTVGVYDR--SQR 73 (111)
T ss_pred eeEEEEEecCCCCcc-eEEEecCCcEEEEEeCC-cEEEEEec-ccceEEEEEcCC---CEEEEEecCCEEEEEeC--cce
Confidence 55666544 5555 79999999999999943 55666654 445777765432 57889999999999953 444
Q ss_pred eeeccCCCCceEEEEE
Q 001319 531 RVDYDAPGHWCTTMLY 546 (1101)
Q Consensus 531 ~~~~~~~~~~v~~~~~ 546 (1101)
.+....... +.++++
T Consensus 74 lWRiKSK~~-~~~~~~ 88 (111)
T PF14783_consen 74 LWRIKSKNQ-VTSMAF 88 (111)
T ss_pred eeeeccCCC-eEEEEE
Confidence 555554444 555544
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=96.02 E-value=3.6 Score=46.27 Aligned_cols=127 Identities=19% Similarity=0.326 Sum_probs=78.2
Q ss_pred ecCCCcEEEEEEecCC----ceEEEEEeccCcEEEEecCCC-----ceeccccceeecccccCccccccccccCCccEEE
Q 001319 341 LHQGSTVISMDFHPSH----QTLLLVGSSNGEITLWELAMR-----DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg----~~llasg~~d~~i~iwd~~~~-----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~ 411 (1101)
+|.=+.|..+.|.|-+ ..|||+- ....|.||.+... +.+......+ .. +++ ---..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQ-HkkhVtVWqL~~s~~e~~K~l~sQtcEi---~e---~~p--------vLpQG 117 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQ-HKKHVTVWQLCPSTTERNKLLMSQTCEI---RE---PFP--------VLPQG 117 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEe-ccceEEEEEeccCccccccceeeeeeec---cC---Ccc--------cCCCc
Confidence 4555679999999963 3577764 6779999998632 2222111111 00 000 01125
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
+.|+|....|++-.....-.++++...... ....+ .-.+.|.|.+|.+||+++.++.|+ .=.-++||...+
T Consensus 118 CVWHPk~~iL~VLT~~dvSV~~sV~~d~sr-VkaDi-~~~G~IhCACWT~DG~RLVVAvGS-sLHSyiWd~~qK 188 (671)
T PF15390_consen 118 CVWHPKKAILTVLTARDVSVLPSVHCDSSR-VKADI-KTSGLIHCACWTKDGQRLVVAVGS-SLHSYIWDSAQK 188 (671)
T ss_pred ccccCCCceEEEEecCceeEeeeeeeCCce-EEEec-cCCceEEEEEecCcCCEEEEEeCC-eEEEEEecCchh
Confidence 789999999988776655566777643321 11123 456789999999999985555555 556789994333
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.01 E-value=0.075 Score=62.81 Aligned_cols=103 Identities=17% Similarity=0.227 Sum_probs=76.7
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
.+..+|.|+..|.|-..|+.+. +++...-..-.++|++++|+.||+ .++.|-.+|.|.+|| ..++.++.+..|..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~n--L~~~~~ne~v~~~Vtsvafn~dg~--~l~~G~~~G~V~v~D~~~~k~l~~i~e~~a 173 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGN--LGPLHQNERVQGPVTSVAFNQDGS--LLLAGLGDGHVTVWDMHRAKILKVITEHGA 173 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcc--cchhhcCCccCCcceeeEecCCCc--eeccccCCCcEEEEEccCCcceeeeeecCC
Confidence 4667999999999999988774 222212224567999999999999 799999999999999 88888888888887
Q ss_pred CeEEEeccc-CCCccEEEEeccCCeEEEEec
Q 001319 496 PVYSICPHH-KENIQFIFSTAIDGKIKAWLY 525 (1101)
Q Consensus 496 ~v~~v~~~~-~~~~~~l~s~~~d~~i~~wd~ 525 (1101)
+++++-++. .+++..++++...|. +|.+
T Consensus 174 p~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 174 PVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred ccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 777665432 223446777777776 4644
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.3 Score=43.53 Aligned_cols=170 Identities=9% Similarity=0.126 Sum_probs=110.4
Q ss_pred eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 842 MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 842 ~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
.+-...+.++.|+| +.+.|++......-.|+=..+|+.+.++.-. -...-.+.+..+|++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp-~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNP-DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCC-CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCC
Confidence 34445599999999 6777777776777777777788888776421 234567888889999998889999999988765
Q ss_pred ccccce---EEeecCCCC-CCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCC-------CCCEEEEEE
Q 001319 921 EKRKSV---TIHIPAGKT-PTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDAL-------SAPISCAVY 988 (1101)
Q Consensus 921 ~~~~~~---~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h-------~~~v~~v~~ 988 (1101)
...... .+....... ..+...++|+|....|.++. .+-+.||....+..-........+ -..|..+.|
T Consensus 161 t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~ 240 (316)
T COG3204 161 TTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEF 240 (316)
T ss_pred ccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeecccccee
Confidence 322111 122211111 36788999999999988876 455777766533311111110000 234667777
Q ss_pred cc-CCCEEEEEeCCCcEEEEeCCCC
Q 001319 989 SC-NSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 989 s~-dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
.+ .+.+|+.+.+++.+.-.|....
T Consensus 241 ~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 241 NAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred cCCCCcEEEEecCCceEEEEecCCC
Confidence 75 4567777888888888887643
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.1 Score=54.26 Aligned_cols=239 Identities=11% Similarity=0.018 Sum_probs=121.0
Q ss_pred CCCeEEEEcCCeEEEEECCCceEEEEeeCCCCC--------eeEEEEec---------------CCCCEEEEEeCCCcEE
Q 001319 815 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPA--------STFLAFHP---------------QDNNIIAIGTEDSTIH 871 (1101)
Q Consensus 815 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~--------i~~l~~s~---------------~~~~~la~g~~dg~v~ 871 (1101)
++.+.++..++.|.-.|..+|+.+.++...... ...+++-. .++..++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 444444444788888899999888877542211 12233321 0234778899999999
Q ss_pred EEEeecceEEEeeccCCCCee-------------EEEEcC--CCCEEEEEeC----------CCcEEEEECCCCccccce
Q 001319 872 IYNVRVDEVKSKLKGHQKRIT-------------GLAFST--SLNILVSSGA----------DAQLCVWSIDTWEKRKSV 926 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~-------------~l~~s~--d~~~l~s~s~----------Dg~v~lwd~~~~~~~~~~ 926 (1101)
-.|..+|+....+.. .+.|. .+.-+| .+..++.|+. +|.|+-+|+.+|+.+-..
T Consensus 274 ALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 999999998876532 22110 011111 1345566643 688999999999976544
Q ss_pred EEeecCCCCCCCcceEEEcCCCCEEEEEeCC--eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 927 TIHIPAGKTPTGDTRVQFNADQVRMLVVHET--QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 927 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~--~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
........ .. -+++.....+..+ ...-||.+.+....-. .. .. ..+-...+........++|
T Consensus 353 ~~g~p~~~--~~------~~~g~~~~~gg~n~W~~~s~D~~~glvy~pt--Gn--~~----pd~~g~~r~~~~n~y~~sl 416 (764)
T TIGR03074 353 DPGNPDPT--AP------PAPGETYTRNTPNSWSVASYDEKLGLVYLPM--GN--QT----PDQWGGDRTPADEKYSSSL 416 (764)
T ss_pred ecCCCCcc--cC------CCCCCEeccCCCCccCceEEcCCCCeEEEeC--CC--cc----ccccCCccccCcccccceE
Confidence 32111110 00 0122222211111 2333344333321110 00 00 0010011101111224567
Q ss_pred EEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC---EEEEEECCCeEEEEeCCCCCCcccc
Q 001319 1005 GVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN---QFAIGLTDGSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1005 ~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~---~l~s~~~Dg~v~iWd~~~~~~~~~~ 1073 (1101)
.-.|++||+..-.++......-. ..-...++-+.....++. .++.++.+|.+.+.|-.+|+..|..
T Consensus 417 vALD~~TGk~~W~~Q~~~hD~WD---~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 417 VALDATTGKERWVFQTVHHDLWD---MDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred EEEeCCCCceEEEecccCCcccc---ccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 77888888887766531100000 000011111222211342 7999999999999999999977764
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.6 Score=47.48 Aligned_cols=206 Identities=15% Similarity=0.129 Sum_probs=89.4
Q ss_pred CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccc-cCCccEEEEEEccCCCEEEEEE--C----C
Q 001319 355 SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAF--T----K 427 (1101)
Q Consensus 355 dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~las~~--~----d 427 (1101)
+.++|++-|-..+.|.|.|+.+.-... .-+++.+.. .+.. .--..-..+---|+|+.++++- . -
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P-~l~KvIe~~--------ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKP-RLHKVIEPE--------EVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGP 156 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS--EEEEEE-HH--------HHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCC-ceEeeeCHH--------HHHhhcCCCCCceeeecCCccEEEEeccCCCCCCC
Confidence 356676666688899999997532211 001111100 0000 0001112223336898888752 2 2
Q ss_pred CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec--------------------CCceEEEEE-cCCce
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG--------------------DDKLIKVWE-LSGRK 486 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~--------------------~d~~v~iwd-~~~~~ 486 (1101)
|-+.+.|-++.+.......-.+...--..+-|.|..+ .++|.. ...++.+|| .+.+.
T Consensus 157 Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~n--vMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~ 234 (461)
T PF05694_consen 157 GGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHN--VMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKL 234 (461)
T ss_dssp -EEEEE-TTT--EEEE--SB-TT------EEEETTTT--EEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEE
T ss_pred CcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCC--EEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcE
Confidence 4577888776554432211112233345666777655 666654 245799999 88888
Q ss_pred eEEeecCC-c-CeEEEecccCCCccEEEEec-cCCeEEEEec-CCCC----eeeeccCC-----------------CCce
Q 001319 487 LFNFEGHE-A-PVYSICPHHKENIQFIFSTA-IDGKIKAWLY-DTMG----SRVDYDAP-----------------GHWC 541 (1101)
Q Consensus 487 ~~~~~~h~-~-~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~-~~~~----~~~~~~~~-----------------~~~v 541 (1101)
++++.--. + ....|.|..+++..+=++++ ...+|..|-- +.++ ....+... ..-|
T Consensus 235 ~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Li 314 (461)
T PF05694_consen 235 LQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLI 314 (461)
T ss_dssp EEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE----
T ss_pred eeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCce
Confidence 88876432 2 35567776665544433332 3444444432 2211 11111110 2347
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
+.+.+|.|.++|..+.. ..|.|+.||+...
T Consensus 315 tDI~iSlDDrfLYvs~W---~~GdvrqYDISDP 344 (461)
T PF05694_consen 315 TDILISLDDRFLYVSNW---LHGDVRQYDISDP 344 (461)
T ss_dssp --EEE-TTS-EEEEEET---TTTEEEEEE-SST
T ss_pred EeEEEccCCCEEEEEcc---cCCcEEEEecCCC
Confidence 89999999999998876 6889999999863
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.68 Score=44.29 Aligned_cols=190 Identities=15% Similarity=0.112 Sum_probs=103.2
Q ss_pred CCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe
Q 001319 815 NDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 891 (1101)
Q Consensus 815 dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V 891 (1101)
+|.++.+.+ ..+|++||+.+|+.+....-....+..=-...-+..+.+..-.+|.-++||..+.+++..+. ..+.-
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~-y~GeG 133 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFS-YEGEG 133 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccc-cCCcc
Confidence 556665554 35699999999998776554322221111111022333444568889999999888877664 33444
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeee
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 971 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~ 971 (1101)
..++- |++.|+.++...++++-|-++........+. -+ |..+.
T Consensus 134 WgLt~--d~~~LimsdGsatL~frdP~tfa~~~~v~VT----------------~~-------------------g~pv~ 176 (262)
T COG3823 134 WGLTS--DDKNLIMSDGSATLQFRDPKTFAELDTVQVT----------------DD-------------------GVPVS 176 (262)
T ss_pred eeeec--CCcceEeeCCceEEEecCHHHhhhcceEEEE----------------EC-------------------Ceecc
Confidence 55543 5555666666666777776664433222211 11 11111
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
.+ .-+.|- ||...|---.+..|..-|.++|+....+..+.-....-....+.--...+++.|..+++++
T Consensus 177 ~L----------NELE~V-dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~i 245 (262)
T COG3823 177 KL----------NELEWV-DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLI 245 (262)
T ss_pred cc----------cceeee-ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEE
Confidence 11 111221 4555555555666777777777777776644432211111112122357999997667777
Q ss_pred EE
Q 001319 1052 IG 1053 (1101)
Q Consensus 1052 s~ 1053 (1101)
||
T Consensus 246 TG 247 (262)
T COG3823 246 TG 247 (262)
T ss_pred ec
Confidence 76
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.72 E-value=1.6 Score=42.68 Aligned_cols=136 Identities=13% Similarity=0.067 Sum_probs=79.8
Q ss_pred cCcEEEEEEecCCCceEEE-EecCCceEEEEE-cCCceeEEeecCC--------cCeEEEecccCCCccEEEEeccCCeE
Q 001319 451 VGAVNDLAFAYPNKLLCVV-TCGDDKLIKVWE-LSGRKLFNFEGHE--------APVYSICPHHKENIQFIFSTAIDGKI 520 (1101)
Q Consensus 451 ~~~V~~l~~s~d~~~~~l~-s~~~d~~v~iwd-~~~~~~~~~~~h~--------~~v~~v~~~~~~~~~~l~s~~~d~~i 520 (1101)
..+.+.-..+|+|+ +++ +-+.-+. +.. ..|..-.-+.+|. +--+.++|..+ ...+-++-+.+-+|
T Consensus 108 knR~NDgkvdP~Gr--yy~GtMad~~~--~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd~d-~K~fY~iDsln~~V 182 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGR--YYGGTMADFGD--DLEPIGGELYSWLAGHQVELIWNCVGISNGLAWDSD-AKKFYYIDSLNYEV 182 (310)
T ss_pred hcccccCccCCCCc--eeeeeeccccc--cccccccEEEEeccCCCceeeehhccCCcccccccc-CcEEEEEccCceEE
Confidence 34567777899999 432 2221111 222 2222222233332 22345677633 22445566777888
Q ss_pred EEEecCC--C-----CeeeeccC----CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceE
Q 001319 521 KAWLYDT--M-----GSRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNG 589 (1101)
Q Consensus 521 ~~wd~~~--~-----~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~ 589 (1101)
.-||++- + +.++.+.. .......+++..+|++.+++-. .++|...|..+|+.+.++.-... .++
T Consensus 183 ~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~n----g~~V~~~dp~tGK~L~eiklPt~-qit 257 (310)
T KOG4499|consen 183 DAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFN----GGTVQKVDPTTGKILLEIKLPTP-QIT 257 (310)
T ss_pred eeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEec----CcEEEEECCCCCcEEEEEEcCCC-ceE
Confidence 8888433 2 22222222 1112345666778888777764 78899999999999999988766 789
Q ss_pred EEEEeCC
Q 001319 590 VVQFDTT 596 (1101)
Q Consensus 590 ~~~~~~~ 596 (1101)
++||...
T Consensus 258 sccFgGk 264 (310)
T KOG4499|consen 258 SCCFGGK 264 (310)
T ss_pred EEEecCC
Confidence 9998753
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.72 E-value=0.037 Score=39.45 Aligned_cols=31 Identities=19% Similarity=0.461 Sum_probs=28.6
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeec
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~ 436 (1101)
...|.+++|+|...+||.|+.+|.|.++.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4579999999999999999999999999983
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.71 E-value=0.025 Score=54.77 Aligned_cols=109 Identities=11% Similarity=0.123 Sum_probs=60.3
Q ss_pred EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCC
Q 001319 902 ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALS 980 (1101)
Q Consensus 902 ~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~ 980 (1101)
.|..-+.||.|+-+++...+........... . .....-+..+++ +.++.|.+|...-........... .
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~~~e------~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~--~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERFIDE------G--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSG--E 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhhhhc------c--eeecccCceEEeecccceEEEecCCccchHHHhhhcc--c
Confidence 3444567888888877653322111111111 1 112222334444 569999999887322221111110 2
Q ss_pred CCEEE-EEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 981 APISC-AVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 981 ~~v~~-v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
..|.+ +.-..++.+..++..||.||-|++.-++.+.....
T Consensus 102 e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~ 142 (238)
T KOG2444|consen 102 ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQ 142 (238)
T ss_pred ccceeccccccccceeEEeccCCceeeeccccCceeeeecc
Confidence 22222 33334556788999999999999998888877664
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=0.03 Score=54.27 Aligned_cols=103 Identities=18% Similarity=0.231 Sum_probs=69.1
Q ss_pred CeEEEEc-CCeEEEEECCCc-eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCC-CCeeE
Q 001319 817 SYVMSAT-GGKISLFNMMTF-KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRITG 893 (1101)
Q Consensus 817 ~~la~~~-dg~i~vwd~~~~-~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~V~~ 893 (1101)
.-+++|. +|.|.+|...-. .....+..-...|-++.-.-+++.+..+++.||.|+.|++.-++.+.....|. .++..
T Consensus 71 ~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~ 150 (238)
T KOG2444|consen 71 AKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEE 150 (238)
T ss_pred ceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCCCcce
Confidence 3455554 999999987521 11111112223343333333356689999999999999999998888888887 56666
Q ss_pred EEEcCCCCEEEEE--eCCCcEEEEECCC
Q 001319 894 LAFSTSLNILVSS--GADAQLCVWSIDT 919 (1101)
Q Consensus 894 l~~s~d~~~l~s~--s~Dg~v~lwd~~~ 919 (1101)
+..+..++.++.+ |.|..++.|++..
T Consensus 151 ~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 151 LIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eEEecCCceEEeeccccchhhhhcchhh
Confidence 6666666777777 7777777787765
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.36 Score=56.93 Aligned_cols=186 Identities=11% Similarity=0.074 Sum_probs=96.7
Q ss_pred CCCeEEEEc-C------CeEEEEECCCceEEEEeeCCCCCe-eEEEEecCCCCEEEEEeCCC-----cEEEEEeecce--
Q 001319 815 NDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTEDS-----TIHIYNVRVDE-- 879 (1101)
Q Consensus 815 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~dg-----~v~iwd~~~~~-- 879 (1101)
++.+.+.|+ + ..+..||..+..-...-.-....- .+++. - ++++.+.|+.++ ++..||..+.+
T Consensus 303 ~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~-~-~g~IYviGG~~~~~~~~sve~Ydp~~~~W~ 380 (557)
T PHA02713 303 DNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAV-I-DDTIYAIGGQNGTNVERTIECYTMGDDKWK 380 (557)
T ss_pred CCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEE-E-CCEEEEECCcCCCCCCceEEEEECCCCeEE
Confidence 667666665 3 237788887654321111111111 12222 2 678888888764 47889987653
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCC-----------------------cEEEEECCCCccccceEEeecCCCCC
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADA-----------------------QLCVWSIDTWEKRKSVTIHIPAGKTP 936 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----------------------~v~lwd~~~~~~~~~~~~~~~~~~~~ 936 (1101)
.+..+.........++ -+|+..+.||.++ .|..||..+.+......+..
T Consensus 381 ~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~------ 452 (557)
T PHA02713 381 MLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWT------ 452 (557)
T ss_pred ECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCc------
Confidence 2222221111112222 3678888887653 46778877754332221111
Q ss_pred CCcceEEEcCCCCEEEEEe-C------CeEEEEEcCC-ce--eeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC--cE
Q 001319 937 TGDTRVQFNADQVRMLVVH-E------TQLAIYDASK-ME--RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG--NI 1004 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~-d------~~i~v~d~~~-~~--~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg--~i 1004 (1101)
......+..-+++..++|+ + ..+..||..+ .+ .+..+... ......+.+ +|+..++|+.|| .+
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~---r~~~~~~~~--~~~iyv~Gg~~~~~~~ 527 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESR---LSALHTILH--DNTIMMLHCYESYMLQ 527 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcc---cccceeEEE--CCEEEEEeeecceeeh
Confidence 1111112233455555543 2 2467899886 33 33333222 222333333 788888999888 78
Q ss_pred EEEeCCCCcee
Q 001319 1005 GVFDADTLRLR 1015 (1101)
Q Consensus 1005 ~vwd~~~~~~~ 1015 (1101)
..||..+.+..
T Consensus 528 e~yd~~~~~W~ 538 (557)
T PHA02713 528 DTFNVYTYEWN 538 (557)
T ss_pred hhcCccccccc
Confidence 88888876553
|
|
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.04 Score=64.96 Aligned_cols=98 Identities=17% Similarity=0.278 Sum_probs=70.2
Q ss_pred EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC
Q 001319 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438 (1101)
Q Consensus 359 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~ 438 (1101)
++|.|+..|.|-..|+.+.-... +.-..-.++|++++|+.||+.++.|-.+|.|.+||+..+
T Consensus 101 ~ivi~Ts~ghvl~~d~~~nL~~~------------------~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGNLGPL------------------HQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eEEEEcCchhhhhhhhhcccchh------------------hcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC
Confidence 56888888999888876531100 001224679999999999999999999999999999999
Q ss_pred cccccceeeecccCcEEE---EEEecCCCceEEEEecCCceEEEEE
Q 001319 439 NDLRQHSQIDAHVGAVND---LAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 439 ~~~~~~~~l~~h~~~V~~---l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
+.++ .+..|..+++. +.+..++. .+.++...|. +|.
T Consensus 163 k~l~---~i~e~~ap~t~vi~v~~t~~nS--~llt~D~~Gs--f~~ 201 (1206)
T KOG2079|consen 163 KILK---VITEHGAPVTGVIFVGRTSQNS--KLLTSDTGGS--FWK 201 (1206)
T ss_pred ccee---eeeecCCccceEEEEEEeCCCc--EEEEccCCCc--eEE
Confidence 8877 44445544444 44555555 6777776665 676
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.57 E-value=0.032 Score=39.73 Aligned_cols=34 Identities=29% Similarity=0.588 Sum_probs=29.5
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCce
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~ 379 (1101)
...|.+++|+|... |+|.|+.+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~md-LiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMD-LIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCC-EEEEEECCCeEEEEEC-CCcC
Confidence 45799999999998 8899999999999998 4543
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=95.32 E-value=6.1 Score=44.00 Aligned_cols=278 Identities=10% Similarity=0.136 Sum_probs=142.2
Q ss_pred ecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-----CCCEEEEEECC
Q 001319 353 HPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-----DGNYVGVAFTK 427 (1101)
Q Consensus 353 spdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-----dg~~las~~~d 427 (1101)
+++++..+++||..|.++||+...+..... .+ ..-..-..+|..++.-. +...||+- .-
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~-~l--------------llE~~l~~PILqv~~G~F~s~~~~~~LaVL-hP 96 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPE-DL--------------LLETQLKDPILQVECGKFVSGSEDLQLAVL-HP 96 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCc-cE--------------EEEEecCCcEEEEEeccccCCCCcceEEEe-cC
Confidence 344555678999999999999855432110 00 00111245676666432 33455554 45
Q ss_pred CeEEEEeecCCccc------ccceeeecccC--cEEEEEEec----CCCceEEEEecCCceEEEEEcCCceeE-Eeec--
Q 001319 428 HLIQLYSYAGSNDL------RQHSQIDAHVG--AVNDLAFAY----PNKLLCVVTCGDDKLIKVWELSGRKLF-NFEG-- 492 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~------~~~~~l~~h~~--~V~~l~~s~----d~~~~~l~s~~~d~~v~iwd~~~~~~~-~~~~-- 492 (1101)
..+.||.+...... ..+..+..|.- ....++.-| .|+. .++.=+.||.+.+++.+.-... .+.+
T Consensus 97 ~kl~vY~v~~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~-~IcVQS~DG~L~~feqe~~~f~~~lp~~l 175 (418)
T PF14727_consen 97 RKLSVYSVSLVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRD-FICVQSMDGSLSFFEQESFAFSRFLPDFL 175 (418)
T ss_pred CEEEEEEEEecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCce-EEEEEecCceEEEEeCCcEEEEEEcCCCC
Confidence 56888888422111 11112223322 222233322 2233 7888899999999995554433 3322
Q ss_pred CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-----------------------eeeccCCCC--ceEEEEEc
Q 001319 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-----------------------RVDYDAPGH--WCTTMLYS 547 (1101)
Q Consensus 493 h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-----------------------~~~~~~~~~--~v~~~~~s 547 (1101)
..+++ ++.+.. +.+++++.+..+..|.+..... .+.+..... .+..+.++
T Consensus 176 lPgPl---~Y~~~t--Dsfvt~sss~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~ 250 (418)
T PF14727_consen 176 LPGPL---CYCPRT--DSFVTASSSWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFS 250 (418)
T ss_pred CCcCe---EEeecC--CEEEEecCceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcC
Confidence 33444 343433 4788888888888886532110 011111111 23333444
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC----CC---CEEEEEeCCCcEEEEECCCCeee
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT----TQ---NHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~----~~---~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
.....+++-+ +..+.+.+. +|......+- .-.+.....|.. ++ ..+++++.++++.||.= .+++
T Consensus 251 ~~~~~IvvLg-----er~Lf~l~~-~G~l~~~krL-d~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~d--~~L~ 321 (418)
T PF14727_consen 251 SSESDIVVLG-----ERSLFCLKD-NGSLRFQKRL-DYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYED--TTLV 321 (418)
T ss_pred CCCceEEEEe-----cceEEEEcC-CCeEEEEEec-CCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEeC--CeEE
Confidence 3333444443 556666665 4544333322 221222222222 22 24888999999999963 3444
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
..-......-.+....|..-...|++-+.+|.+.+--+.+.
T Consensus 322 WsA~l~~~PVal~v~~~~~~~G~IV~Ls~~G~L~v~YLGTd 362 (418)
T PF14727_consen 322 WSAQLPHVPVALSVANFNGLKGLIVSLSDEGQLSVSYLGTD 362 (418)
T ss_pred EecCCCCCCEEEEecccCCCCceEEEEcCCCcEEEEEeCCC
Confidence 44433221111122222233558888889999999877766
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=95.29 E-value=4 Score=41.74 Aligned_cols=200 Identities=11% Similarity=0.079 Sum_probs=115.3
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee-eccCCCCCCCCEeEEEecC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA-NDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~s~ 814 (1101)
...-..++.|..+|..+-+.+.-|.-.+. .+++.+|+... ..+. ...--..+++-.
T Consensus 43 ~~aFTQGL~~~~~g~LyESTG~yG~S~l~--------------------~~d~~tg~~~~~~~l~---~~~FgEGit~~~ 99 (264)
T PF05096_consen 43 PTAFTQGLEFLDDGTLYESTGLYGQSSLR--------------------KVDLETGKVLQSVPLP---PRYFGEGITILG 99 (264)
T ss_dssp TT-EEEEEEEEETTEEEEEECSTTEEEEE--------------------EEETTTSSEEEEEE-T---TT--EEEEEEET
T ss_pred CcccCccEEecCCCEEEEeCCCCCcEEEE--------------------EEECCCCcEEEEEECC---ccccceeEEEEC
Confidence 34455778888888877777776643332 22344554332 2221 233344556554
Q ss_pred CCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC-----CC
Q 001319 815 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH-----QK 889 (1101)
Q Consensus 815 dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h-----~~ 889 (1101)
|.-+..+-.++...+||..+.+.+.++.-. +.=..++. +++.|+.......++++|..+.+....+... -.
T Consensus 100 d~l~qLTWk~~~~f~yd~~tl~~~~~~~y~-~EGWGLt~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~ 175 (264)
T PF05096_consen 100 DKLYQLTWKEGTGFVYDPNTLKKIGTFPYP-GEGWGLTS---DGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVS 175 (264)
T ss_dssp TEEEEEESSSSEEEEEETTTTEEEEEEE-S-SS--EEEE---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE--
T ss_pred CEEEEEEecCCeEEEEccccceEEEEEecC-CcceEEEc---CCCEEEEECCccceEEECCcccceEEEEEEEECCEECC
Confidence 444445555899999999999999988753 45566663 5667777777778999998777666555322 12
Q ss_pred CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCC---------CCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 890 RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG---------KTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 890 ~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~---------~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
.++.|.|- +|...|=.-....|..-|..+|+......+..... ....-...+|+.|....+.+.+..--+
T Consensus 176 ~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK~Wp~ 254 (264)
T PF05096_consen 176 NLNELEYI-NGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGKLWPK 254 (264)
T ss_dssp -EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEETT-SE
T ss_pred CcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeCCCCc
Confidence 45667775 56666655555667788888888766554322110 012457889999988877776544434
Q ss_pred EEE
Q 001319 961 IYD 963 (1101)
Q Consensus 961 v~d 963 (1101)
+|.
T Consensus 255 lye 257 (264)
T PF05096_consen 255 LYE 257 (264)
T ss_dssp EEE
T ss_pred eEE
Confidence 443
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=95.08 E-value=4.3 Score=40.93 Aligned_cols=242 Identities=14% Similarity=0.108 Sum_probs=148.8
Q ss_pred CCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE-
Q 001319 804 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK- 881 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~- 881 (1101)
...-..++-++||..-.+++ .+.|--.|..+|+....--+....-..+..-| |+..-++-+.. .|.=.|-++.+..
T Consensus 61 G~ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gp-dg~~Witd~~~-aI~R~dpkt~evt~ 138 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGP-DGSAWITDTGL-AIGRLDPKTLEVTR 138 (353)
T ss_pred CCCccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECC-CCCeeEecCcc-eeEEecCcccceEE
Confidence 34456788889998887877 67788889999988877666666677788888 55444333222 3444444443321
Q ss_pred Ee--eccCCCCeeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 882 SK--LKGHQKRITGLAFSTSLNILVSSGAD---------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 882 ~~--~~~h~~~V~~l~~s~d~~~l~s~s~D---------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
.. .+.-........|.++|++.+++... +.|++|+.-.| .....++..|||..
T Consensus 139 f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~~~i~vfpaPqG----------------~gpyGi~atpdGsv 202 (353)
T COG4257 139 FPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPARNVISVFPAPQG----------------GGPYGICATPDGSV 202 (353)
T ss_pred eecccccCCCcccceeeCCCccEEEeeccccceecCcccCceeeeccCCC----------------CCCcceEECCCCcE
Confidence 11 12224557788899999988887532 33455544322 45677899999998
Q ss_pred EEEE-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCccc
Q 001319 951 MLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL 1029 (1101)
Q Consensus 951 l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 1029 (1101)
-+++ .++.|...|..++.. ..+.........-+.+.-+|.|+..++....+.+.-||-.+-..+..-.+
T Consensus 203 wyaslagnaiaridp~~~~a-ev~p~P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~sW~eypLP--------- 272 (353)
T COG4257 203 WYASLAGNAIARIDPFAGHA-EVVPQPNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVTSWIEYPLP--------- 272 (353)
T ss_pred EEEeccccceEEcccccCCc-ceecCCCcccccccccccCccCcEEEeccCCceeeEeCcccccceeeeCC---------
Confidence 7774 467777777776632 33333332234455666778888888888888898888876553322111
Q ss_pred CCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC-CccccCCC
Q 001319 1030 NGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE-GKWGVSPP 1076 (1101)
Q Consensus 1030 ~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~-~~~~~~~~ 1076 (1101)
+..-.+.++.-.. .++...+--.-|.|.-+|.++.+ ..+..++|
T Consensus 273 --gs~arpys~rVD~-~grVW~sea~agai~rfdpeta~ftv~p~pr~ 317 (353)
T COG4257 273 --GSKARPYSMRVDR-HGRVWLSEADAGAIGRFDPETARFTVLPIPRP 317 (353)
T ss_pred --CCCCCcceeeecc-CCcEEeeccccCceeecCcccceEEEecCCCC
Confidence 1111112232233 24555555556778878877766 55555555
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=94.85 E-value=0.77 Score=51.24 Aligned_cols=154 Identities=12% Similarity=0.176 Sum_probs=90.4
Q ss_pred CCeeEEEEecCCCCEEEEEe--CCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCC----CEEEEEeCCCcEEEEECCC
Q 001319 846 PASTFLAFHPQDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL----NILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~--~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~----~~l~s~s~Dg~v~lwd~~~ 919 (1101)
.++..++|.. +.+.+.+.- .+|.+++=| .+.+.. -..|..++|+|-+ ..|...-..+.|.+|.+..
T Consensus 20 HPvhGlaWTD-GkqVvLT~L~l~~gE~kfGd---s~viGq----FEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~ 91 (671)
T PF15390_consen 20 HPVHGLAWTD-GKQVVLTDLQLHNGEPKFGD---SKVIGQ----FEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCP 91 (671)
T ss_pred ccccceEecC-CCEEEEEeeeeeCCccccCC---ccEeec----cceeeeeeecCcccCCCCceEEEeccceEEEEEecc
Confidence 4688899985 444444432 334443322 223333 3458999999853 2455556677899999863
Q ss_pred Cc-----cccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeE-EEEEcC--CceeeeEeccCCCCCCCEEEEEEccC
Q 001319 920 WE-----KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL-AIYDAS--KMERIRQWTPQDALSAPISCAVYSCN 991 (1101)
Q Consensus 920 ~~-----~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i-~v~d~~--~~~~~~~~~~~~~h~~~v~~v~~s~d 991 (1101)
.. ........+. ...+.-...+.|+|....|++-....+ .+++.. +......+.. .+.|.|.+|.+|
T Consensus 92 s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~----~G~IhCACWT~D 166 (671)
T PF15390_consen 92 STTERNKLLMSQTCEIR-EPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKT----SGLIHCACWTKD 166 (671)
T ss_pred Cccccccceeeeeeecc-CCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccC----CceEEEEEecCc
Confidence 22 2211111111 111133456889999999998543334 334443 3333344433 788999999999
Q ss_pred CCEEEEEe-CCCcEEEEeCCCC
Q 001319 992 SQLVFATF-CDGNIGVFDADTL 1012 (1101)
Q Consensus 992 g~~l~s~~-~dg~i~vwd~~~~ 1012 (1101)
|+.|+++- ..=.-+|||-...
T Consensus 167 G~RLVVAvGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 167 GQRLVVAVGSSLHSYIWDSAQK 188 (671)
T ss_pred CCEEEEEeCCeEEEEEecCchh
Confidence 99887653 3345788986654
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.80 E-value=1 Score=53.41 Aligned_cols=153 Identities=9% Similarity=0.099 Sum_probs=77.5
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe---C----CeEEEEEcCC
Q 001319 899 SLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---E----TQLAIYDASK 966 (1101)
Q Consensus 899 d~~~l~s~s~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d----~~i~v~d~~~ 966 (1101)
+++..+.||.+ ..+..||..+.+......+... ..-.++ ..-+++..+.|+ + +.+..||..+
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~-----r~~~~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t 415 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFP-----RYNPCV-VNVNNLIYVIGGISKNDELLKTVECFSLNT 415 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcC-----CccceE-EEECCEEEEECCcCCCCcccceEEEEeCCC
Confidence 67777888865 3477888877554322211111 111122 223555555543 1 4588999876
Q ss_pred ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC--------cEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceE
Q 001319 967 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG--------NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1038 (1101)
Q Consensus 967 ~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg--------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 1038 (1101)
.+-...-..... .... + +...+++..+.|+.++ .+.+||..+.+....-. .+. ..... .
T Consensus 416 ~~W~~~~~~p~~-r~~~-~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~----~~~-----~r~~~-~ 482 (534)
T PHA03098 416 NKWSKGSPLPIS-HYGG-C-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS----LNF-----PRINA-S 482 (534)
T ss_pred CeeeecCCCCcc-ccCc-e-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC----CCc-----ccccc-e
Confidence 554322211111 1111 1 2234677667776432 38889988765543211 010 11011 1
Q ss_pred EEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCccccCC
Q 001319 1039 VVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGVSP 1075 (1101)
Q Consensus 1039 ~l~~~p~d~~~l~s~~~D-----g~v~iWd~~~~~~~~~~~~ 1075 (1101)
.+.. ++.+++.||.+ +.|.++|..+.+ |....
T Consensus 483 ~~~~---~~~iyv~GG~~~~~~~~~v~~yd~~~~~--W~~~~ 519 (534)
T PHA03098 483 LCIF---NNKIYVVGGDKYEYYINEIEVYDDKTNT--WTLFC 519 (534)
T ss_pred EEEE---CCEEEEEcCCcCCcccceeEEEeCCCCE--EEecC
Confidence 1221 57788888765 468888887765 65443
|
|
| >KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown] | Back alignment and domain information |
|---|
Probab=94.77 E-value=15 Score=45.51 Aligned_cols=25 Identities=12% Similarity=0.184 Sum_probs=14.8
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
...++|+.+|...++-+ ..|++.|.
T Consensus 477 PkGIa~dk~g~lYfaD~------t~IR~iD~ 501 (1899)
T KOG4659|consen 477 PKGIAFDKMGNLYFADG------TRIRVIDT 501 (1899)
T ss_pred CCceeEccCCcEEEecc------cEEEEecc
Confidence 34677888777655532 24666653
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.66 E-value=6.1 Score=47.61 Aligned_cols=99 Identities=7% Similarity=0.116 Sum_probs=58.6
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
-...|..|.+||+|++||..|..| |.|-.+-.. ......+.+-...|.|=.+.-+.. +...
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r--~g~~~~~~~g~~~i~Crt~~v~~~---~~~~------------- 143 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRR--WGKNGEFEDGKKEINCRTVPVDER---FFTS------------- 143 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccc--cCccccccCCCcceeEEEEEechh---hccC-------------
Confidence 356899999999999999998877 555444210 000001222333344433333332 1111
Q ss_pred ceeEEeecCCcCeEEEecccCC-CccEEEEeccCCeEEEEecCCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMG 529 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~ 529 (1101)
.+...|..+.|+|.+ ++..|+.-..|+++|+||+....
T Consensus 144 -------~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 144 -------NSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred -------CCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCCC
Confidence 134457778888764 35677788888899999886533
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=94.65 E-value=5.4 Score=43.46 Aligned_cols=188 Identities=14% Similarity=0.164 Sum_probs=105.4
Q ss_pred EEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecc--cCCCccE--EEEecc-C---CeEEEEecCCCCe-eeeccC-
Q 001319 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH--HKENIQF--IFSTAI-D---GKIKAWLYDTMGS-RVDYDA- 536 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~--~~~~~~~--l~s~~~-d---~~i~~wd~~~~~~-~~~~~~- 536 (1101)
+++....++-+.+||..|+.+..+. .+..+.+.+. ..-+|+. |+.++. + .+|++|.++.... ...+..
T Consensus 70 lIigTdK~~GL~VYdL~Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L~~v~~~ 147 (381)
T PF02333_consen 70 LIIGTDKKGGLYVYDLDGKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGELTDVTDP 147 (381)
T ss_dssp EEEEEETTTEEEEEETTS-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEEEE-CBT
T ss_pred eEEEEeCCCCEEEEcCCCcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcceEcCCC
Confidence 6777778889999999999998885 2344444321 1112222 344432 2 4799998864322 222221
Q ss_pred ------CCCceEEEEEc--c-CCCEEEEeecCCCCCceEEEEeCC---CC----eeEEEecccCCcceEEEEEeCCCCEE
Q 001319 537 ------PGHWCTTMLYS--A-DGSRLFSCGTSKDGDSFLVEWNES---EG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 537 ------~~~~v~~~~~s--~-d~~~l~~~~~~~~~~~~i~iwd~~---~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
....+..+|+. + +|.+.+.... .+|.+..|.+. .+ +.++.|.... .+..+.......+|
T Consensus 148 ~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~---k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~s--Q~EGCVVDDe~g~L 222 (381)
T PF02333_consen 148 AAPIATDLSEPYGLCLYRSPSTGALYAFVNG---KDGRVEQYELTDDGDGKVSATLVREFKVGS--QPEGCVVDDETGRL 222 (381)
T ss_dssp TC-EE-SSSSEEEEEEEE-TTT--EEEEEEE---TTSEEEEEEEEE-TTSSEEEEEEEEEE-SS---EEEEEEETTTTEE
T ss_pred CcccccccccceeeEEeecCCCCcEEEEEec---CCceEEEEEEEeCCCCcEeeEEEEEecCCC--cceEEEEecccCCE
Confidence 11236677763 3 4665554443 36667666553 33 5678887654 57778888888899
Q ss_pred EEEeCCCcEEEEECCC-----CeeeEeeccCCCCCCCCeeEEec--CCC-EEEEE-EcCCcEEEEEcccc
Q 001319 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--EGN-LLAVT-TADNGFKILANAIG 661 (1101)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~g~-~l~~~-~~d~~i~iwd~~~~ 661 (1101)
+.+-++.-|.-|+.+. +..+.......-...|-.+++-. ++. +|++. -.+++..+|+....
T Consensus 223 YvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 223 YVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999998888887752 22332332222234566677643 332 44444 45778999997643
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.65 E-value=9.6 Score=42.81 Aligned_cols=312 Identities=13% Similarity=0.065 Sum_probs=152.4
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.....|.++.|.-.|.+. +|+.|| +..+|..+++.+.... .....+|..+.-+-.|+ |
T Consensus 162 l~d~~V~aLv~D~~g~lW--vgT~dG-L~~fd~~~gkalql~s------------------~~~dk~I~al~~d~qg~-L 219 (671)
T COG3292 162 LKDTPVVALVFDANGRLW--VGTPDG-LSYFDAGRGKALQLAS------------------PPLDKAINALIADVQGR-L 219 (671)
T ss_pred ccCccceeeeeeccCcEE--EecCCc-ceEEccccceEEEcCC------------------CcchhhHHHHHHHhcCc-E
Confidence 345689999999999843 455665 5667877777654210 11124566665555554 5
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE-eecCC--cCeE
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHE--APVY 498 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~h~--~~v~ 498 (1101)
.+|+.+| |.+.+.++.+..... ..-..+.|..+.=..+|. +..|+..|..+.--..+..... .+-|. ..|.
T Consensus 220 WVGTdqG-v~~~e~~G~~~sn~~--~~lp~~~I~ll~qD~qG~---lWiGTenGl~r~~l~rq~Lq~~~~~~~l~~S~vn 293 (671)
T COG3292 220 WVGTDQG-VYLQEAEGWRASNWG--PMLPSGNILLLVQDAQGE---LWIGTENGLWRTRLPRQGLQIPLSKMHLGVSTVN 293 (671)
T ss_pred EEEeccc-eEEEchhhccccccC--CCCcchheeeeecccCCC---EEEeecccceeEecCCCCccccccccCCcccccc
Confidence 5677777 888877763221110 001233444444444444 5556655533222222222211 12222 2334
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc--CCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
++.. +.+| -|.+++.+|.+++=+-+-....+.....+..+...+.+| .+..+.... ..+.+.+-+..+|..
T Consensus 294 sL~~--D~dG-sLWv~t~~giv~~~~a~w~~ma~in~~dG~v~~~~~~a~~ll~~~v~~~n----s~g~L~van~stG~~ 366 (671)
T COG3292 294 SLWL--DTDG-SLWVGTYGGIVRYLTADWKRMAVINDSDGGVSQYEAVAPALLSWGVRQLN----SIGELMVANGSTGEL 366 (671)
T ss_pred ceee--ccCC-CEeeeccCceEEEecchhhheeeeecCCCchhhhhccCchhcccceeecc----ccceEEEecCCCCcE
Confidence 4433 3344 466677776665443211110111111111121222222 111221111 134466666677777
Q ss_pred EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC-CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
++......+..++.+++..+ ..+-.|+...-+..|+..+ +......... ...+|..+.-.|+++ |..|+.+|.++.
T Consensus 367 v~sv~q~Rg~nit~~~~d~~-g~lWlgs~q~GLsrl~n~n~~avlde~agl-~ss~V~aived~dns-LWIGTs~Glvk~ 443 (671)
T COG3292 367 VRSVHQLRGMNITTTLEDSR-GRLWLGSMQNGLSRLDNKNEWAVLDEDAGL-PSSEVSAIVEDPDNS-LWIGTSGGLVKR 443 (671)
T ss_pred EEEeeeccccccchhhhccC-CcEEEEecccchhhhccCCcccccccccCC-cccceeeeeecCCCC-EEEeccCCeEec
Confidence 77765555556777777774 4556666654555666655 3222222221 234677788888888 777888887654
Q ss_pred EEccccccccccccCCCcccccCcceeeeeeecccccc
Q 001319 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1101)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 693 (1101)
+.+.+ .....+.........+.+..+.+.++|+.-+
T Consensus 444 -~pe~~-~v~n~ln~~~~~l~~s~~~~lg~~~~g~Lw~ 479 (671)
T COG3292 444 -DPESG-RVLNLLNPGSHGLDGSRVEQLGLGPDGRLWL 479 (671)
T ss_pred -Ccccc-chhcccccccCcCCcchhhhhccCCCCceEE
Confidence 22221 1122222111111223355667777776653
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.029 Score=64.54 Aligned_cols=180 Identities=11% Similarity=0.156 Sum_probs=103.9
Q ss_pred CeEEEEECC--CceEEEEeeC-----CCCCeeEEEEecC--CCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEE
Q 001319 825 GKISLFNMM--TFKVMTTFMS-----PPPASTFLAFHPQ--DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLA 895 (1101)
Q Consensus 825 g~i~vwd~~--~~~~~~~~~~-----~~~~i~~l~~s~~--~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~ 895 (1101)
|.+.||+++ .|+....+.. -...+.-+.|.|- +.-++..+..+++|++....+... ..+.+|...++.++
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a 231 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMA 231 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHH
Confidence 678888875 3444332221 1223344444431 456777888889998877765432 45566877766655
Q ss_pred -----------EcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC-------C--CEEEEEe
Q 001319 896 -----------FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-------Q--VRMLVVH 955 (1101)
Q Consensus 896 -----------~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-------~--~~l~~~~ 955 (1101)
+||||+.+|.+..||.+++|.+.-.......+.+....|...+-.|.-|+.. + .+++++.
T Consensus 232 ~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Ittt 311 (1283)
T KOG1916|consen 232 FFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTT 311 (1283)
T ss_pred HHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecc
Confidence 4899999999999999999987644333344444444443222222224332 1 2233333
Q ss_pred --CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC--------E----EEEEeCCCcEEEEeCCC
Q 001319 956 --ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ--------L----VFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 956 --d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~--------~----l~s~~~dg~i~vwd~~~ 1011 (1101)
+..+++|....+++...+. ...|..|. -+||+ | +++-+-|+.|.+|.-..
T Consensus 312 d~nre~k~w~~a~w~Cll~~~-----~d~v~iV~-p~~~~v~~~~~~~~~~~~~v~r~v~~~i~~~qn~~ 375 (1283)
T KOG1916|consen 312 DVNREEKFWAEAPWQCLLDKL-----IDGVQIVG-PHDGEVTDLSMCQWMTTRLVSRSVDGTIKIWQNRK 375 (1283)
T ss_pred cCCcceeEeeccchhhhhhhc-----ccceEeec-CCCccccchhhhHHHHHHHHHhhhHHHHHHhhcch
Confidence 5678899888777762221 23344444 33443 1 23345678888886443
|
|
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.59 Score=49.95 Aligned_cols=159 Identities=13% Similarity=0.063 Sum_probs=100.0
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEE-Ee-eCCCC----Cee-EEEEecCCCCEEEEEeCCCcEEEE-E
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT-TF-MSPPP----AST-FLAFHPQDNNIIAIGTEDSTIHIY-N 874 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~-~~-~~~~~----~i~-~l~~s~~~~~~la~g~~dg~v~iw-d 874 (1101)
...++..+-..|||+.+..-+..++.++++.+..... .+ ....+ .|+ ++..-. ++.-|.+++.||-|.-| |
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~-Gg~SLLv~~~dG~vsQWFd 297 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTGSELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLS-GGFSLLVVHEDGLVSQWFD 297 (733)
T ss_pred CccchHhhEECCCCCEEEEecCCeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHh-CceeEEEEcCCCceeeeee
Confidence 4566778889999999988888889999886543321 11 11111 132 223233 66778889999998877 4
Q ss_pred eecc-e----EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCC
Q 001319 875 VRVD-E----VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 875 ~~~~-~----~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
+..+ . .++.++-...++..+.--.+.+-+++-+..|++.++.-...+..-... .......+++||.+.
T Consensus 298 vr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~-------~~~~~~~~~~Sp~~~ 370 (733)
T COG4590 298 VRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFER-------AYQAPQLVAMSPNQA 370 (733)
T ss_pred eecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhh-------hhcCcceeeeCcccc
Confidence 4322 1 122222223344444433345567788888888887655433211111 114677899999999
Q ss_pred EEEEEeCCeEEEEEcCCcee
Q 001319 950 RMLVVHETQLAIYDASKMER 969 (1101)
Q Consensus 950 ~l~~~~d~~i~v~d~~~~~~ 969 (1101)
++++-+.++++++.+++-..
T Consensus 371 ~Ll~e~~gki~~~~l~Nr~P 390 (733)
T COG4590 371 YLLSEDQGKIRLAQLENRNP 390 (733)
T ss_pred hheeecCCceEEEEecCCCC
Confidence 99999999999998876544
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.58 E-value=4.1 Score=44.02 Aligned_cols=119 Identities=11% Similarity=0.201 Sum_probs=80.6
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..++|.++.||+|.+ ++|+--.+++|.+.+....+...... ...+.....|....|+.+ .-+|
T Consensus 65 d~G~I~SIkFSlDnk-ilAVQR~~~~v~f~nf~~d~~~l~~~---------------~~ck~k~~~IlGF~W~~s-~e~A 127 (657)
T KOG2377|consen 65 DKGEIKSIKFSLDNK-ILAVQRTSKTVDFCNFIPDNSQLEYT---------------QECKTKNANILGFCWTSS-TEIA 127 (657)
T ss_pred CCCceeEEEeccCcc-eEEEEecCceEEEEecCCCchhhHHH---------------HHhccCcceeEEEEEecC-eeEE
Confidence 567999999999998 77999999999999985433221100 012223556999999865 7777
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
.....| +.+|-+...+ +..+..+.|...|+-..|+++.+-.+|+|+-..+++.=+-
T Consensus 128 ~i~~~G-~e~y~v~pek--rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~ 183 (657)
T KOG2377|consen 128 FITDQG-IEFYQVLPEK--RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFH 183 (657)
T ss_pred EEecCC-eEEEEEchhh--hhhhhhhhcccCccEEEEccccceEeeeccccccccccEE
Confidence 777766 8888776543 2223456788899999999998854444443444443333
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.53 E-value=4.7 Score=46.71 Aligned_cols=219 Identities=10% Similarity=0.086 Sum_probs=109.6
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
+.+-+|..+|....=++ +.--.|+|++.. |..+. +++-.|. .+..+.||.+..+| +.
T Consensus 44 gGpIAV~r~p~~~~~~~--~a~~~I~If~~s-G~lL~------------------~~~w~~~-~lI~mgWs~~eeLI-~v 100 (829)
T KOG2280|consen 44 GGPIAVTRSPSKLVPLY--SARPYIRIFNIS-GQLLG------------------RILWKHG-ELIGMGWSDDEELI-CV 100 (829)
T ss_pred CCceEEEeccccccccc--ccceeEEEEecc-ccchH------------------HHHhcCC-CeeeecccCCceEE-EE
Confidence 34455666664311111 233468888864 44443 1233344 88999999777655 45
Q ss_pred ECCCeEEEEeecCCcccccc-eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC-CcCeEEEe
Q 001319 425 FTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSIC 501 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h-~~~v~~v~ 501 (1101)
..+|+++||++-... +... .-.......|..+.|...|= +.-..+|.+.+-+ .....++++..- .......+
T Consensus 101 ~k~g~v~Vy~~~ge~-ie~~svg~e~~~~~I~ec~~f~~GV----avlt~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~ 175 (829)
T KOG2280|consen 101 QKDGTVHVYGLLGEF-IESNSVGFESQMSDIVECRFFHNGV----AVLTVSGQVILINGVEEPKLRKMPDIPYNELPKSC 175 (829)
T ss_pred eccceEEEeecchhh-hcccccccccccCceeEEEEecCce----EEEecCCcEEEEcCCCcchhhhCCCCCCccCCCcc
Confidence 689999999997532 2210 01122334566666666553 3333345555444 333233333220 01111112
Q ss_pred cccCCC---ccEEEEec-cCCeEEEEecCCCC-eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 502 PHHKEN---IQFIFSTA-IDGKIKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 502 ~~~~~~---~~~l~s~~-~d~~i~~wd~~~~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
|.-..+ ...++-.. ..+ ..+...+... ....+......+..+..||+.++|+.-.. .|.|++-+.+..+.
T Consensus 176 Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n~~~laLyt~----~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 176 WTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPNRRFLALYTE----TGKIWVVSIDLSQI 250 (829)
T ss_pred eeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCCcceEEEEec----CCcEEEEecchhhh
Confidence 211111 11111111 000 0111111111 11223333456888999999999998765 88898888887777
Q ss_pred EEEecccCCcceEEEEEeCC
Q 001319 577 KRTYAGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~ 596 (1101)
...+..........++|..+
T Consensus 251 lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 251 LCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred hhccCCCCCCchHhceeecC
Confidence 77766433323334555543
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=94.48 E-value=1.6 Score=49.70 Aligned_cols=80 Identities=11% Similarity=0.187 Sum_probs=54.0
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEE-
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY- 962 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~- 962 (1101)
+..|.+.|--+..+..+..|..-...-.+.++|+.+.+..-.. .-.+-+.|-|....+++-+...+.||
T Consensus 333 ~inh~~~vdwielne~~~kllfrdkk~kl~l~di~s~qksmil----------nfcsymqwvp~sdvivaqn~dnl~iwy 402 (1636)
T KOG3616|consen 333 FINHEGAVDWIELNERAHKLLFRDKKLKLHLVDIESCQKSMIL----------NFCSYMQWVPGSDVIVAQNGDNLCIWY 402 (1636)
T ss_pred cccccccccceeccchhhhhhcccccceeEEEEcccchHHHHH----------HHhhhheeccCcceEEecCCCceEEEe
Confidence 3458888888888887777777777777889999874422111 23455789999888888766677777
Q ss_pred EcCCceeeeEe
Q 001319 963 DASKMERIRQW 973 (1101)
Q Consensus 963 d~~~~~~~~~~ 973 (1101)
+++-.+.+..+
T Consensus 403 n~d~peqvt~~ 413 (1636)
T KOG3616|consen 403 NIDAPEQVTMF 413 (1636)
T ss_pred cCCcchhheee
Confidence 44444443333
|
|
| >COG4257 Vgb Streptogramin lyase [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=94.38 E-value=6.5 Score=39.73 Aligned_cols=209 Identities=12% Similarity=0.107 Sum_probs=132.4
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce
Q 001319 847 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV 926 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~ 926 (1101)
.-..++-+| ||..-.++...|.|--.|-.+|+....--+.......+...|||...++-+.. -|.-.|-++.+ ..
T Consensus 63 ap~dvapap-dG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~e---vt 137 (353)
T COG4257 63 APFDVAPAP-DGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLE---VT 137 (353)
T ss_pred CccccccCC-CCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccc---eE
Confidence 345677778 88788888888888888888888776666666677788889998877765444 35555555544 23
Q ss_pred EEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEE
Q 001319 927 TIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1006 (1101)
Q Consensus 927 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~v 1006 (1101)
.......+.........|.++|.+-.++..|.---.|..+ ..+..+.... ...-..|+..|||...++.-.+..|..
T Consensus 138 ~f~lp~~~a~~nlet~vfD~~G~lWFt~q~G~yGrLdPa~-~~i~vfpaPq--G~gpyGi~atpdGsvwyaslagnaiar 214 (353)
T COG4257 138 RFPLPLEHADANLETAVFDPWGNLWFTGQIGAYGRLDPAR-NVISVFPAPQ--GGGPYGICATPDGSVWYASLAGNAIAR 214 (353)
T ss_pred EeecccccCCCcccceeeCCCccEEEeeccccceecCccc-CceeeeccCC--CCCCcceEECCCCcEEEEeccccceEE
Confidence 4444555666788999999999999886533222112111 1222232222 445567888999998888777888888
Q ss_pred EeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC-CccccC
Q 001319 1007 FDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE-GKWGVS 1074 (1101)
Q Consensus 1007 wd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~-~~~~~~ 1074 (1101)
-|..++.......+.. + |... -.+--+| -++..+|....+.+.-+|.++.. ..|++|
T Consensus 215 idp~~~~aev~p~P~~-~------~~gs---Rriwsdp-ig~~wittwg~g~l~rfdPs~~sW~eypLP 272 (353)
T COG4257 215 IDPFAGHAEVVPQPNA-L------KAGS---RRIWSDP-IGRAWITTWGTGSLHRFDPSVTSWIEYPLP 272 (353)
T ss_pred cccccCCcceecCCCc-c------cccc---cccccCc-cCcEEEeccCCceeeEeCcccccceeeeCC
Confidence 8877763322222111 0 1111 1222334 47778887778888888877655 555554
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=94.37 E-value=0.93 Score=53.79 Aligned_cols=189 Identities=12% Similarity=0.031 Sum_probs=92.6
Q ss_pred CCCCeEEEEc-C------CeEEEEECCCceEEEEeeCC--CCCeeEEEEecCCCCEEEEEeCC-----CcEEEEEeecce
Q 001319 814 KNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE 879 (1101)
Q Consensus 814 ~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~la~g~~d-----g~v~iwd~~~~~ 879 (1101)
.++.+++.|+ + ..+..||..+.+-...-..+ ......+. - ++++++.|+.+ ..+..||..+++
T Consensus 293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~-~~~lyv~GG~~~~~~~~~v~~yd~~~~~ 369 (534)
T PHA03098 293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--F-NNRIYVIGGIYNSISLNTVESWKPGESK 369 (534)
T ss_pred ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--E-CCEEEEEeCCCCCEecceEEEEcCCCCc
Confidence 3556666664 2 24778888765543221111 11122222 2 67788888865 357778876653
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
-...-......-...+..-+++..+.||.+ ..+..||..+.+........ .. .. ...+...++...+.
T Consensus 370 W~~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p--~~---r~-~~~~~~~~~~iyv~ 443 (534)
T PHA03098 370 WREEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLP--IS---HY-GGCAIYHDGKIYVI 443 (534)
T ss_pred eeeCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCC--cc---cc-CceEEEECCEEEEE
Confidence 221111011111111122356777777742 35888998875543221111 11 11 11223335555555
Q ss_pred Ee-C--------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCce
Q 001319 954 VH-E--------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRL 1014 (1101)
Q Consensus 954 ~~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~ 1014 (1101)
|+ + ..+.+||..+.+-...-..... ......+. .+++.++.|+.+ ..|.+||..+.+.
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W 515 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCI--FNNKIYVVGGDKYEYYINEIEVYDDKTNTW 515 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEE--ECCEEEEEcCCcCCcccceeEEEeCCCCEE
Confidence 43 1 2388899876654322111110 11112222 267777777754 4688888887654
|
|
| >cd08044 TAF5_NTD2 TAF5_NTD2 is the second conserved N-terminal region of TATA Binding Protein (TBP) Associated Factor 5 (TAF5), involved in forming Transcription Factor IID (TFIID) | Back alignment and domain information |
|---|
Probab=94.23 E-value=0.12 Score=47.51 Aligned_cols=78 Identities=18% Similarity=0.269 Sum_probs=58.2
Q ss_pred HHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHHH
Q 001319 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1101)
Q Consensus 72 ~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1101)
++|+++-+.|||++..|..++|..|+++.-.-+.....+.++.|+.+....+..+++....+.+ .+.+-..|+
T Consensus 29 lLyPiFvh~yL~lv~~~~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~~Ky~i~ms~~s~~lL~ 108 (133)
T cd08044 29 LLYPIFVHSYLDLVASGHLEEAKSFFERFSGDFEDSHSEDIKKLSSITTPEHLKENELAKLFRSNKYVIRMSRDAYSLLL 108 (133)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhhHhhHHHHHHHHHHHHccCCHHHHhhhHHHHHHHhCCEEEEECHHHHHHHH
Confidence 9999999999999999999999999987666555567788999988877776666555444433 233445556
Q ss_pred HHHHh
Q 001319 145 IELKK 149 (1101)
Q Consensus 145 ~~l~~ 149 (1101)
.-|++
T Consensus 109 ~~L~~ 113 (133)
T cd08044 109 RFLES 113 (133)
T ss_pred HHHHH
Confidence 55555
|
The TATA Binding Protein (TBP) Associated Factor 5 (TAF5) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TAF5 contains three domains, two conserved sequence motifs at the N-terminal and one at the C-terminal region. TFIID is one of seven General Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the preinitiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. In yeast and human cells, TAFs have been found as components of other complexes besides TFIID. TAF5 may play a major role in forming TFIID and its related complexes. TAFs from various |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.04 E-value=19 Score=43.75 Aligned_cols=106 Identities=13% Similarity=0.176 Sum_probs=65.6
Q ss_pred EEecCCCCeEEEEcCCeEEEEECCCceEEEEee--CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee--cceEEEeec
Q 001319 810 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR--VDEVKSKLK 885 (1101)
Q Consensus 810 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~--~~~~~~~~~ 885 (1101)
.|+.|-..++.+|-...+++||+...++++... .-...|+.+++ .+..+++|..--.|..+... ..+++.-..
T Consensus 939 ~Ai~~f~~~~LagvG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt---~~~RI~VgD~qeSV~~~~y~~~~n~l~~fad 1015 (1205)
T KOG1898|consen 939 GAICPFQGRVLAGVGRFLRLYDLGKKKLLRKCELKFIPNRISSIQT---YGARIVVGDIQESVHFVRYRREDNQLIVFAD 1015 (1205)
T ss_pred eEEeccCCEEEEecccEEEEeeCChHHHHhhhhhccCceEEEEEee---cceEEEEeeccceEEEEEEecCCCeEEEEeC
Confidence 345576668888888999999998776655433 23456777777 55678888766666655444 344332221
Q ss_pred -cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 886 -GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 886 -~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
.-...|+++.+- |-..+|.+..=|.+.+-.+-.
T Consensus 1016 D~~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1016 DPVPRHVTALELL-DYDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred CCccceeeEEEEe-cCCceeeccccCcEEEEECCC
Confidence 122336666665 445667676667776665543
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=94.02 E-value=19 Score=43.62 Aligned_cols=94 Identities=13% Similarity=0.087 Sum_probs=55.9
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCC-ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMT-FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 881 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~-~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~ 881 (1101)
..-.|..+.++++|+++|..+...|.|..+.. +.....+.+-...|.|=++.= +..++
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v-~~~~~-------------------- 141 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPV-DERFF-------------------- 141 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEe-chhhc--------------------
Confidence 45578999999999999998876676666542 111122222122222222211 11111
Q ss_pred EeeccCCCCeeEEEEcCC---CCEEEEEeCCCcEEEEECCC
Q 001319 882 SKLKGHQKRITGLAFSTS---LNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 882 ~~~~~h~~~V~~l~~s~d---~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
...+...|..+.|+|. +..|+.-..|+++|+||+..
T Consensus 142 --~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~ 180 (717)
T PF10168_consen 142 --TSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISD 180 (717)
T ss_pred --cCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCC
Confidence 0123456777888876 46788888888888888864
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.97 E-value=2 Score=50.09 Aligned_cols=122 Identities=13% Similarity=0.163 Sum_probs=77.7
Q ss_pred eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec-cCCCCeeEEEEc--CCCCEEEEEeCCCcEEEEEC
Q 001319 841 FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFS--TSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 841 ~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s--~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
+...-..++.+.-|. -++..++-+...++.|||...+....+-. ...+.|.++.|. ||++.+++.|....|.++.-
T Consensus 25 ~~T~i~~~~li~gss-~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q 103 (631)
T PF12234_consen 25 FETGISNPSLISGSS-IKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQ 103 (631)
T ss_pred EecCCCCcceEeecc-cCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEc
Confidence 333334455555555 44555454455689999999887543222 457889999985 78999999999999999854
Q ss_pred CC-------CccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 918 DT-------WEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 918 ~~-------~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
.. ........+.. ..+++.+|....|.++|.+++ +.++++.|+|-.
T Consensus 104 ~R~dy~~~~p~w~~i~~i~i-~~~T~h~Igds~Wl~~G~LvV-~sGNqlfv~dk~ 156 (631)
T PF12234_consen 104 LRYDYTNKGPSWAPIRKIDI-SSHTPHPIGDSIWLKDGTLVV-GSGNQLFVFDKW 156 (631)
T ss_pred cchhhhcCCcccceeEEEEe-ecCCCCCccceeEecCCeEEE-EeCCEEEEECCC
Confidence 21 11111112222 334446788999999997554 556678887643
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF04494 TFIID_90kDa: WD40 associated region in TFIID subunit; InterPro: IPR007582 This region, possibly a domain is found in subunits of transcription factor TFIID | Back alignment and domain information |
|---|
Probab=93.79 E-value=0.12 Score=48.04 Aligned_cols=78 Identities=14% Similarity=0.279 Sum_probs=51.8
Q ss_pred HHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHHH
Q 001319 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1101)
Q Consensus 72 ~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1101)
++|+++-+.||+|+..|..++|..|+.+.-.-+.....+++++|..+....+...++....+.. .+.+-..|+
T Consensus 40 lLyPvFvh~YL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~i~~L~~i~~~~~l~~~~~~~~~r~~Ky~I~ls~~s~~lL~ 119 (142)
T PF04494_consen 40 LLYPVFVHSYLDLVSKGHPEEAKSFLEKFSPDFEDSHQEDIEKLSSITSPEHLEENELARLFRSNKYVIRLSRDSFSLLL 119 (142)
T ss_dssp GHHHHHHHHHHHHHHTT-HHHHHHHHHHHGGGGHGHGHHHHHHHTT--SHHHHHHSHHHHHHHCSGEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHhHHHHHHHHHHHhhCcHHHHhccHHHHHHHhCCeeEEECHHHHHHHH
Confidence 9999999999999999999999999998666665556677888876665554443333332222 233445555
Q ss_pred HHHHh
Q 001319 145 IELKK 149 (1101)
Q Consensus 145 ~~l~~ 149 (1101)
..|++
T Consensus 120 ~fL~~ 124 (142)
T PF04494_consen 120 QFLQE 124 (142)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
The function of this region is unknown.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 2J4B_D 2J49_A 2NXP_F. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.73 E-value=2.1 Score=49.59 Aligned_cols=183 Identities=11% Similarity=0.029 Sum_probs=90.1
Q ss_pred CCCeEEEEc-C-----CeEEEEECCCceEEEE--eeCCCCCeeEEEEecCCCCEEEEEeCC--CcEEEEEeecceE--EE
Q 001319 815 NDSYVMSAT-G-----GKISLFNMMTFKVMTT--FMSPPPASTFLAFHPQDNNIIAIGTED--STIHIYNVRVDEV--KS 882 (1101)
Q Consensus 815 dg~~la~~~-d-----g~i~vwd~~~~~~~~~--~~~~~~~i~~l~~s~~~~~~la~g~~d--g~v~iwd~~~~~~--~~ 882 (1101)
++.++++|+ + ..+..||..+.+-... +.........+ .- ++.+.++|+.+ .++..||..+++- +.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~-~~~iYviGG~~~~~sve~ydp~~n~W~~~~ 347 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PA-NNKLYVVGGLPNPTSVERWFHGDAAWVNMP 347 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EE-CCEEEEECCcCCCCceEEEECCCCeEEECC
Confidence 455556665 2 2477788876543222 22111112222 23 67888888864 3577888665432 22
Q ss_pred eeccCCCCeeEEEEcCCCCEEEEEeCCC---cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeE
Q 001319 883 KLKGHQKRITGLAFSTSLNILVSSGADA---QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 959 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~l~s~s~Dg---~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 959 (1101)
.+.. ..-...+..-+|+..+.||.++ .+..||..+.+.......... . ....+..-+++..++| |.+
T Consensus 348 ~l~~--~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-----r-~~~~~~~~~~~IYv~G--G~~ 417 (480)
T PHA02790 348 SLLK--PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-----H-YKSCALVFGRRLFLVG--RNA 417 (480)
T ss_pred CCCC--CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-----c-ccceEEEECCEEEEEC--Cce
Confidence 2221 1111122233677778888654 477888876543321111110 1 1112223455555555 356
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCc
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLR 1013 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~ 1013 (1101)
.+||..+.+-...-..... ......+. -+|+..+.|+.+ .+|.+||..+.+
T Consensus 418 e~ydp~~~~W~~~~~m~~~-r~~~~~~v--~~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 418 EFYCESSNTWTLIDDPIYP-RDNPELII--VDNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EEecCCCCcEeEcCCCCCC-ccccEEEE--ECCEEEEECCcCCCcccceEEEEECCCCe
Confidence 7888876554322221110 12222222 367777777754 346677766554
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=93.55 E-value=14 Score=40.53 Aligned_cols=278 Identities=11% Similarity=0.073 Sum_probs=129.3
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...+.+|+|..+.+ .+|+|. +| .||....+-.- |..... .+......+.++.|.++ ..+++
T Consensus 45 ~~~l~~v~F~d~~~-g~avG~-~G--~il~T~DgG~t-------W~~~~~-------~~~~~~~~l~~v~~~~~-~~~~~ 105 (334)
T PRK13684 45 EANLLDIAFTDPNH-GWLVGS-NR--TLLETNDGGET-------WEERSL-------DLPEENFRLISISFKGD-EGWIV 105 (334)
T ss_pred CCceEEEEEeCCCc-EEEEEC-CC--EEEEEcCCCCC-------ceECcc-------CCcccccceeeeEEcCC-cEEEe
Confidence 45788999985554 567774 44 34444333211 110000 01112334778888754 33444
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEec
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICP 502 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~ 502 (1101)
| ..+.|.. .-+.|+.......-....+....+....++. .++. +..|.|..=+..|+.-..+. .-.+.+..+.+
T Consensus 106 G-~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~-g~~G~i~~S~DgG~tW~~~~~~~~g~~~~i~~ 180 (334)
T PRK13684 106 G-QPSLLLH-TTDGGKNWTRIPLSEKLPGSPYLITALGPGT--AEMA-TNVGAIYRTTDGGKNWEALVEDAAGVVRNLRR 180 (334)
T ss_pred C-CCceEEE-ECCCCCCCeEccCCcCCCCCceEEEEECCCc--ceee-eccceEEEECCCCCCceeCcCCCcceEEEEEE
Confidence 4 4443222 2333443332110000111122222222232 2333 34454433223333322222 22456778877
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeee--eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
.+ ++.++ ..+..|.+.. ..+.+...+ ........++++.+.++++.++++. .+.+.+-..+.|..-...
T Consensus 181 ~~--~g~~v-~~g~~G~i~~-s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-----~G~~~~~s~d~G~sW~~~ 251 (334)
T PRK13684 181 SP--DGKYV-AVSSRGNFYS-TWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-----GGQIRFNDPDDLESWSKP 251 (334)
T ss_pred CC--CCeEE-EEeCCceEEE-EcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-----CCEEEEccCCCCCccccc
Confidence 65 44455 4444565532 112222211 1223345788999999999877764 455543233444322221
Q ss_pred ccc---CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc-CCCCCCCCeeEEecCCCEEEEEEcCCcEEEE
Q 001319 581 AGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-EGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1101)
Q Consensus 581 ~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 656 (1101)
... ....+..+.+.+++. ++.++.+|.+.. ....++.-..... ..-......+.|..+++.++ .+..|.|..|
T Consensus 252 ~~~~~~~~~~l~~v~~~~~~~-~~~~G~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~~ 328 (334)
T PRK13684 252 IIPEITNGYGYLDLAYRTPGE-IWAGGGNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLRY 328 (334)
T ss_pred cCCccccccceeeEEEcCCCC-EEEEcCCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEEe
Confidence 111 112456678888765 555666776653 4455554444332 11112456777776666655 4556777666
Q ss_pred E
Q 001319 657 A 657 (1101)
Q Consensus 657 d 657 (1101)
+
T Consensus 329 ~ 329 (334)
T PRK13684 329 V 329 (334)
T ss_pred c
Confidence 4
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.51 E-value=8.1 Score=44.89 Aligned_cols=181 Identities=13% Similarity=0.123 Sum_probs=95.1
Q ss_pred eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe----eccCCCCeeEEEEcCCCC
Q 001319 826 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK----LKGHQKRITGLAFSTSLN 901 (1101)
Q Consensus 826 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~----~~~h~~~V~~l~~s~d~~ 901 (1101)
.|+||++ +|+.+..+.-..+.+-.+.|+. +. -|++...+|++++|++... .+.. +......|..+.+..+|=
T Consensus 65 ~I~If~~-sG~lL~~~~w~~~~lI~mgWs~-~e-eLI~v~k~g~v~Vy~~~ge-~ie~~svg~e~~~~~I~ec~~f~~GV 140 (829)
T KOG2280|consen 65 YIRIFNI-SGQLLGRILWKHGELIGMGWSD-DE-ELICVQKDGTVHVYGLLGE-FIESNSVGFESQMSDIVECRFFHNGV 140 (829)
T ss_pred eEEEEec-cccchHHHHhcCCCeeeecccC-Cc-eEEEEeccceEEEeecchh-hhcccccccccccCceeEEEEecCce
Confidence 4788887 5666665554455888999997 54 4557789999999998632 2222 122234455555555553
Q ss_pred EEEEEeCCCcEEE-EECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE--EeC--CeEEEEEcCCce-eeeEecc
Q 001319 902 ILVSSGADAQLCV-WSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHE--TQLAIYDASKME-RIRQWTP 975 (1101)
Q Consensus 902 ~l~s~s~Dg~v~l-wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--~~d--~~i~v~d~~~~~-~~~~~~~ 975 (1101)
.+ -..+|++.+ -+++.........+. ... -.-.+-..-+++..... .-+ -...++-.+.+. ....+..
T Consensus 141 av--lt~~g~v~~i~~~~~~~~~~~~diP---~~~-~~~~~Wt~~~~~~~~~~ll~v~~~v~~~~~q~~~~~~q~~~~~~ 214 (829)
T KOG2280|consen 141 AV--LTVSGQVILINGVEEPKLRKMPDIP---YNE-LPKSCWTVFQPHRQSTILLDVDVAVGLHICQVEESRVQLHALSW 214 (829)
T ss_pred EE--EecCCcEEEEcCCCcchhhhCCCCC---Ccc-CCCcceeEecCCCcceeEEeechhhhhcccceecccccccccCC
Confidence 33 333444433 333321111111101 100 11122222222111111 101 011122221111 1111111
Q ss_pred CCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 976 QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 976 ~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
. .+.+..+..||+.++|+.=..+|.|.+-+++..+..+.+.
T Consensus 215 ~---~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 215 P---NSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred C---CceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 1 3678899999999999999999999999999888887776
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=93.40 E-value=3.6 Score=40.42 Aligned_cols=162 Identities=12% Similarity=0.130 Sum_probs=90.8
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe----CC---eEEEEE
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ET---QLAIYD 963 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----d~---~i~v~d 963 (1101)
...++-++. ..|..+.....|.+|++...+......+.. -+.+..+.++.-|.+|++-. .. .+++|-
T Consensus 20 P~~~c~~g~-d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-----v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~ 93 (215)
T PF14761_consen 20 PTAVCCGGP-DALFVAASGCKVEVYDLEQEECPLLCTFST-----VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYF 93 (215)
T ss_pred cceeeccCC-ceEEEEcCCCEEEEEEcccCCCceeEEEcc-----hhheeEEEeccccceEEEEEeecCCccceEEEEEE
Confidence 334444443 344444566779999999444332222221 16788999999999999942 23 567662
Q ss_pred ---cC--CceeeeE-eccCC------------------CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce-eEee
Q 001319 964 ---AS--KMERIRQ-WTPQD------------------ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL-RCYI 1018 (1101)
Q Consensus 964 ---~~--~~~~~~~-~~~~~------------------~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~-~~~~ 1018 (1101)
.. ....++. ..++. ....++.+++..|-..-|+.|+ ++.+.+|.+..... ...+
T Consensus 94 NWr~~~~~~~~v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~~~~~~~ 172 (215)
T PF14761_consen 94 NWRSQKEENSPVRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQTIQSEKF 172 (215)
T ss_pred EhhhhcccCCcEEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEEEecccc
Confidence 11 1122221 11100 0145677888888655566676 56788998876544 1111
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
.-..+. ...+-|.....+..+++.. ++++.. .|-.+++..+
T Consensus 173 ~~lDFe-~~l~~~~~~~~p~~v~ic~---~yiA~~-s~~ev~Vlkl 213 (215)
T PF14761_consen 173 SFLDFE-RSLIDHIDNFKPTQVAICE---GYIAVM-SDLEVLVLKL 213 (215)
T ss_pred cEEech-hhhhheecCceEEEEEEEe---eEEEEe-cCCEEEEEEE
Confidence 111111 2333467777788888876 355555 4567777665
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=93.24 E-value=9.1 Score=42.80 Aligned_cols=203 Identities=13% Similarity=0.015 Sum_probs=109.9
Q ss_pred ecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCC--CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCC-
Q 001319 812 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPP--PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ- 888 (1101)
Q Consensus 812 ~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~--~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~- 888 (1101)
..-||+.++...+|.|.-+|..++..+.....-. ..+..-.+.. +|+ +..++.+|.++.+|..+|+.+.......
T Consensus 65 ~~~dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~-~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~ 142 (370)
T COG1520 65 ADGDGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGS-DGK-IYVGSWDGKLYALDASTGTLVWSRNVGGS 142 (370)
T ss_pred EeeCCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEe-CCe-EEEecccceEEEEECCCCcEEEEEecCCC
Confidence 3346666666668888888888888765443321 2333333333 555 6688889989999988898887776554
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCC
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASK 966 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~ 966 (1101)
..+..-....++ .+..++.++.+.-.+-.+|+.+-....... ....+..-....++...+... ++.+.-++..+
T Consensus 143 ~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~~~~---~~~~~~~~~~~~~~~vy~~~~~~~~~~~a~~~~~ 218 (370)
T COG1520 143 PYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYETPAP---LSLSIYGSPAIASGTVYVGSDGYDGILYALNAED 218 (370)
T ss_pred eEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEecCCc---cccccccCceeecceEEEecCCCcceEEEEEccC
Confidence 112222222233 333333677777777777765433222210 001111111133444444433 45677778878
Q ss_pred ceeeeEeccCCCC-CCCEEEEEEccC-----CCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 967 MERIRQWTPQDAL-SAPISCAVYSCN-----SQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 967 ~~~~~~~~~~~~h-~~~v~~v~~s~d-----g~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
|...........- ...+........ +.-+..++.+|.+.-.|..+|+.+-....
T Consensus 219 G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~ 278 (370)
T COG1520 219 GTLKWSQKVSQTIGRTAISTTPAVDGGPVYVDGGVYAGSYGGKLLCLDADTGELIWSFPA 278 (370)
T ss_pred CcEeeeeeeecccCcccccccccccCceEEECCcEEEEecCCeEEEEEcCCCceEEEEec
Confidence 8776663321100 111100111111 12235666778888889888888777663
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=93.21 E-value=2 Score=49.99 Aligned_cols=110 Identities=14% Similarity=0.208 Sum_probs=73.0
Q ss_pred EEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee-cCCcCeEEEecccCCCccEEEEeccCCeEEEEec-----C
Q 001319 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY-----D 526 (1101)
Q Consensus 454 V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~-----~ 526 (1101)
..-+.-+.-++ ..+.-+....+.||| ..+.....-. ...+.|.++.|...++|+.+++.+..+.|.++-- .
T Consensus 32 ~~li~gss~~k--~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 32 PSLISGSSIKK--IAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred cceEeecccCc--EEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhh
Confidence 34444444455 344444456899999 5555332222 3577899999999999999999999999999842 1
Q ss_pred CCCe----e--eeccC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 527 TMGS----R--VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 527 ~~~~----~--~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
...+ . ..+.. ..++|....|.++|..++.++ +.+.++|-
T Consensus 110 ~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG------Nqlfv~dk 155 (631)
T PF12234_consen 110 NKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG------NQLFVFDK 155 (631)
T ss_pred cCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC------CEEEEECC
Confidence 1111 1 11222 346789999999998887764 46888774
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=93.14 E-value=1.8 Score=48.19 Aligned_cols=102 Identities=20% Similarity=0.183 Sum_probs=53.5
Q ss_pred CcEEEEEEecCCceEEEEEe-----------ccC-cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGS-----------SNG-EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~-----------~d~-~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
....+|+|.++|+ |+++-. ..+ .|.+++-..+.-... ...++...-.....+
T Consensus 14 ~~P~~ia~d~~G~-l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d---------------~~~vfa~~l~~p~Gi 77 (367)
T TIGR02604 14 RNPIAVCFDERGR-LWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYD---------------KSNVFAEELSMVTGL 77 (367)
T ss_pred CCCceeeECCCCC-EEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcc---------------eeEEeecCCCCccce
Confidence 4678899999998 545431 223 677776543322111 001122233456889
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCC-----cccccceeeec----ccCcEEEEEEecCCC
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGS-----NDLRQHSQIDA----HVGAVNDLAFAYPNK 464 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~-----~~~~~~~~l~~----h~~~V~~l~~s~d~~ 464 (1101)
+|.++| .++ ++.....++.|.... +.......+.. +......++|.|||.
T Consensus 78 ~~~~~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~ 136 (367)
T TIGR02604 78 AVAVGG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGW 136 (367)
T ss_pred eEecCC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCC
Confidence 999999 444 444433334354321 11111111211 234578899999997
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=93.10 E-value=12 Score=38.73 Aligned_cols=208 Identities=16% Similarity=0.172 Sum_probs=116.5
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEee------cc-eEEEeecc-----CCCCeeEEEEcCCCC------------EE
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVR------VD-EVKSKLKG-----HQKRITGLAFSTSLN------------IL 903 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~------~~-~~~~~~~~-----h~~~V~~l~~s~d~~------------~l 903 (1101)
-..++++| .+.+.++....+...+||.. .. .++-.+.. -....+.+.|+.... .+
T Consensus 25 ~WGia~~p-~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 25 AWGLSYRP-GGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred cceeEecC-CCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45689999 77888888888999999986 12 22333331 234577888874322 35
Q ss_pred EEEeCCCcEEEEECCCCccc--cceEEeecCCCCCCCcceEEEc--CCCCEEEEEe--CCeEEEEEcCCceeee--Eecc
Q 001319 904 VSSGADAQLCVWSIDTWEKR--KSVTIHIPAGKTPTGDTRVQFN--ADQVRMLVVH--ETQLAIYDASKMERIR--QWTP 975 (1101)
Q Consensus 904 ~s~s~Dg~v~lwd~~~~~~~--~~~~~~~~~~~~~~~v~~~~~s--~d~~~l~~~~--d~~i~v~d~~~~~~~~--~~~~ 975 (1101)
+.+++||+|.-|.-.-+... ... +....+.....-..+++- ..+.+|...+ .++|.|||-.-.+... .+..
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~-~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f~~~~~~g~F~D 182 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAE-IVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSFRPPPLPGSFID 182 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccE-EEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCccccccCCCCccC
Confidence 77889999999986443321 111 111111111222344444 3466666654 8999999865332211 0110
Q ss_pred C--CC--C---------CCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEE
Q 001319 976 Q--DA--L---------SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1042 (1101)
Q Consensus 976 ~--~~--h---------~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~ 1042 (1101)
. .. - .--|+...-.+++..=+.|..-|.|-+||.. |+++.++.....+- .+..++-
T Consensus 183 P~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LN----------aPWG~a~ 251 (336)
T TIGR03118 183 PALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLN----------APWGLAI 251 (336)
T ss_pred CCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCccc----------CCceeee
Confidence 0 00 0 1112222222333333344456789999975 77888776332221 2334554
Q ss_pred ecC-----CCCEEEEEECCCeEEEEeCCCCC
Q 001319 1043 HPL-----EPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1043 ~p~-----d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.|. .+.+|+-=--||+|..||..+++
T Consensus 252 APa~FG~~sg~lLVGNFGDG~InaFD~~sG~ 282 (336)
T TIGR03118 252 APESFGSLSGALLVGNFGDGTINAYDPQSGA 282 (336)
T ss_pred ChhhhCCCCCCeEEeecCCceeEEecCCCCc
Confidence 442 36677766679999999998877
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=92.98 E-value=16 Score=46.79 Aligned_cols=148 Identities=12% Similarity=0.166 Sum_probs=89.0
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
|-..++.|.-+|+|.++=+ .|+.++.||..+...... -..-...++.++-.-||+..|
T Consensus 361 H~A~LTgv~~~~~ge~lRl---Hd~~LY~~d~~~~~Wk~~-------------------~~~~d~~~S~Ls~qgdG~lYA 418 (1774)
T PF11725_consen 361 HIAHLTGVHTDPDGEQLRL---HDDRLYQFDPNTARWKPP-------------------PDKSDTPFSSLSRQGDGKLYA 418 (1774)
T ss_pred HHHHhhccccCCCCCeEEe---ecCceeeeccccceecCC-------------------CCcccchhhhhcccCCCceEe
Confidence 5667788888888885422 788888888776532210 111344566666666777666
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc---CCc----e--eEEeecC
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL---SGR----K--LFNFEGH 493 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~---~~~----~--~~~~~~h 493 (1101)
=+.+ .|-|+.++.... ..-..+.+...+++|.- .+.++-...++.+|+. .+. + ...+.+-
T Consensus 419 -k~~~---~l~nLSs~~~~~------~~v~~l~sfSv~~~g~v-A~L~~~d~q~~qL~~m~~~~a~~~p~~~~~L~L~dG 487 (1774)
T PF11725_consen 419 -KDDD---TLVNLSSGQMSE------AEVDKLKSFSVAPDGTV-AMLTGKDGQTLQLHDMSPVDAPPTPRKTKTLQLADG 487 (1774)
T ss_pred -cCCC---ceeecCCCCcch------hhhhhcccccccCCCce-eeeecCCCcceeeeccCccccccCccceeeeeccCC
Confidence 2222 134555543211 12345777888899983 4667777777899992 221 1 1233333
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
.....+|.++. + .|+++..+|.++.=++..
T Consensus 488 ~a~A~~VgLs~--d--rLFvADseGkLYsa~l~~ 517 (1774)
T PF11725_consen 488 KAQAQSVGLSN--D--RLFVADSEGKLYSADLPA 517 (1774)
T ss_pred chhhhheeecC--C--eEEEEeCCCCEEeccccc
Confidence 44566777754 2 688888899887766543
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.89 E-value=0.41 Score=51.03 Aligned_cols=171 Identities=12% Similarity=0.101 Sum_probs=98.7
Q ss_pred eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE-Eee-ccCCC----Cee-EEEEcCCCCEEEEEeC
Q 001319 836 KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKL-KGHQK----RIT-GLAFSTSLNILVSSGA 908 (1101)
Q Consensus 836 ~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~-~~~-~~h~~----~V~-~l~~s~d~~~l~s~s~ 908 (1101)
+.+..+......+..+-..| |++.|.+-+. .++.++++.+.... +++ ....+ .|+ .+..-..|..|..++.
T Consensus 211 e~i~~L~~~~~~v~qllL~P-dg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 211 EIIRLLSVPFSDVSQLLLTP-DGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred hhhhhcCCCccchHhhEECC-CCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcC
Confidence 34444555667788899999 8998877665 78999998865432 111 11111 122 2223345677888999
Q ss_pred CCcEEEE-ECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEE
Q 001319 909 DAQLCVW-SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCA 986 (1101)
Q Consensus 909 Dg~v~lw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v 986 (1101)
||.|.-| |+..+...+...++...-. +..+..+.-....+-++. ...|++.++.....+.+..-.. -..+.-+
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~-pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~----~~~~~~~ 363 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLA-PAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERA----YQAPQLV 363 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccC-cccceeeccccccceEEEEcCCCceeeeecccCcceehhhh----hcCccee
Confidence 9998887 5544333221111111110 022222222222333333 4467777776554444332222 3356788
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 987 VYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 987 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
++||++.+|++-. .|.|+++.+++...
T Consensus 364 ~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 364 AMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eeCcccchheeec-CCceEEEEecCCCC
Confidence 9999999998765 66799999887644
|
|
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.52 E-value=4.2 Score=47.14 Aligned_cols=187 Identities=7% Similarity=-0.052 Sum_probs=92.2
Q ss_pred CCCEEEEEeCCC-----cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCC--CcEEEEECCCCccccceEEe
Q 001319 857 DNNIIAIGTEDS-----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD--AQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 857 ~~~~la~g~~dg-----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D--g~v~lwd~~~~~~~~~~~~~ 929 (1101)
++.++++|+.++ .+..||..+++-...-.-...........-+++..+.||.+ .++..||..+++......+.
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~ 350 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGVPANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLL 350 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEEEECCEEEEECCcCCCCceEEEECCCCeEEECCCCC
Confidence 556777777543 46677777654322111111111111123467777888764 35788887654332211111
Q ss_pred ecCCCCCCCcceEEEcCCCCEEEEEe-C---CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001319 930 IPAGKTPTGDTRVQFNADQVRMLVVH-E---TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIG 1005 (1101)
Q Consensus 930 ~~~~~~~~~v~~~~~s~d~~~l~~~~-d---~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~ 1005 (1101)
. ......+..-+|+..++|+ + ..+..||..+.+-...-..... .... .+..-+|+..+.|+ .+.
T Consensus 351 -----~-~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~-r~~~--~~~~~~~~IYv~GG---~~e 418 (480)
T PHA02790 351 -----K-PRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYP-HYKS--CALVFGRRLFLVGR---NAE 418 (480)
T ss_pred -----C-CCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCc-cccc--eEEEECCEEEEECC---ceE
Confidence 0 1111222233566656543 2 4577888876554332221110 1111 12234677666664 578
Q ss_pred EEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CeEEEEeCCCCC
Q 001319 1006 VFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESE 1068 (1101)
Q Consensus 1006 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D-----g~v~iWd~~~~~ 1068 (1101)
+||..+.+....-. .+.. ... . +++.. ++.+++.||.+ ..+..||..+++
T Consensus 419 ~ydp~~~~W~~~~~----m~~~---r~~--~--~~~v~--~~~IYviGG~~~~~~~~~ve~Yd~~~~~ 473 (480)
T PHA02790 419 FYCESSNTWTLIDD----PIYP---RDN--P--ELIIV--DNKLLLIGGFYRGSYIDTIEVYNNRTYS 473 (480)
T ss_pred EecCCCCcEeEcCC----CCCC---ccc--c--EEEEE--CCEEEEECCcCCCcccceEEEEECCCCe
Confidence 89988765432211 1100 111 1 12211 57888999865 357788888766
|
|
| >KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.47 E-value=0.26 Score=57.13 Aligned_cols=163 Identities=15% Similarity=0.228 Sum_probs=94.1
Q ss_pred CCCcEEEEEEe----cCCceEEEEEeccCcEEEEecCC--CceeccccceeecccccCccccccccccCCccEEEEEEc-
Q 001319 343 QGSTVISMDFH----PSHQTLLLVGSSNGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS- 415 (1101)
Q Consensus 343 h~~~V~~v~fs----pdg~~llasg~~d~~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s- 415 (1101)
..++|-.++|- |.++. .-|...|||++- |+......+++ ...-...+.-|.|.
T Consensus 131 f~G~v~dl~fah~~~pk~~~------~vg~lfVy~vd~l~G~iq~~l~v~~--------------~~p~gs~~~~V~wcp 190 (1283)
T KOG1916|consen 131 FPGGVGDLQFAHTKCPKGRR------LVGELFVYDVDVLQGEIQPQLEVTP--------------ITPYGSDPQLVSWCP 190 (1283)
T ss_pred CCCCcccccccccCChHHHH------HhhhhheeehHhhccccccceEEee--------------cCcCCCCcceeeecc
Confidence 45667777763 33431 235778999864 33322211111 11122233444444
Q ss_pred --cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEE-----------EecCCCceEEEEecCCceEEEEE-
Q 001319 416 --PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA-----------FAYPNKLLCVVTCGDDKLIKVWE- 481 (1101)
Q Consensus 416 --pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~-----------~s~d~~~~~l~s~~~d~~v~iwd- 481 (1101)
++.-++..+-.+++|++.++.+... . .+.+|..++..++ .||||. .++.+..||.++.|.
T Consensus 191 ~~~~~~~ic~~~~~~~i~lL~~~ra~~--~--l~rsHs~~~~d~a~~~~g~~~l~~lSpDGt--v~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 191 IAVNKVYICYGLKGGEIRLLNINRALR--S--LFRSHSQRVTDMAFFAEGVLKLASLSPDGT--VFAWAISDGSVGFYQI 264 (1283)
T ss_pred cccccceeeeccCCCceeEeeechHHH--H--HHHhcCCCcccHHHHhhchhhheeeCCCCc--EEEEeecCCccceeee
Confidence 4777888888889999887776432 1 3456888777765 488999 899999999999888
Q ss_pred -cCCc----eeEEeecCCc-CeEEEecccCC-------CccEEEEec-cCCeEEEEecCCCCee
Q 001319 482 -LSGR----KLFNFEGHEA-PVYSICPHHKE-------NIQFIFSTA-IDGKIKAWLYDTMGSR 531 (1101)
Q Consensus 482 -~~~~----~~~~~~~h~~-~v~~v~~~~~~-------~~~~l~s~~-~d~~i~~wd~~~~~~~ 531 (1101)
.+|+ |+..++.|.+ +-.|.-++... --.++++++ ....+++|.-...++.
T Consensus 265 yi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd~nre~k~w~~a~w~Cl 328 (1283)
T KOG1916|consen 265 YITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTDVNREEKFWAEAPWQCL 328 (1283)
T ss_pred eeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEecccCCcceeEeeccchhhh
Confidence 6665 4556667763 22222122110 012334433 3456888865555544
|
|
| >PF10433 MMS1_N: Mono-functional DNA-alkylating methyl methanesulfonate N-term; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 2B5N_C 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A | Back alignment and domain information |
|---|
Probab=92.46 E-value=27 Score=41.00 Aligned_cols=391 Identities=13% Similarity=0.142 Sum_probs=0.0
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccC-------CccEEEEEEcc-----
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV-------PISVSRVAWSP----- 416 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-------~~~v~~~~~sp----- 416 (1101)
++..|.|+ .++.+..++.+.|+.++. .+.... ...+ ...|..++|-.
T Consensus 49 l~vDP~~R-~i~v~a~e~~~~v~~l~~~~~~~~~-------------------~~~~~~~pi~s~~~i~~~~FL~~~~~~ 108 (504)
T PF10433_consen 49 LAVDPSGR-CIAVSAYEGNFLVYPLNRSLDSDIA-------------------FSPHINSPIKSEGNILDMCFLHPSVGY 108 (504)
T ss_dssp EEE-TTSS-EEEEEEBTTEEEEEE-SS----T-T-------------------T---EEEE--S-SEEEEEEEES---S-
T ss_pred EEECCcCC-EEEEEecCCeEEEEEeccccccccc-------------------ccccccccccCCceEEEEEEEecccCC
Q ss_pred CCCEEEEEECCCe------EEEEeecCCcccccceeeec------ccCcEEEEEEecCCCceEEEEecCCceEEEEE--c
Q 001319 417 DGNYVGVAFTKHL------IQLYSYAGSNDLRQHSQIDA------HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--L 482 (1101)
Q Consensus 417 dg~~las~~~d~~------i~vwd~~~~~~~~~~~~l~~------h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~ 482 (1101)
+...+|.--.+.. .+-|+...+........-.. +..+..-+..-.... .++.++..-.+..=. .
T Consensus 109 ~~p~la~L~~~~~~~~~~~~y~w~~~~~l~~~~~~~~~~~~l~~~~~~p~~LIPlp~~~g--gllV~~~~~i~y~~~~~~ 186 (504)
T PF10433_consen 109 DNPTLAILYVDSQRRTHLVTYEWSLDDGLNHVISKSTLPIRLPNEDELPSFLIPLPNPPG--GLLVGGENIIIYKNHLIG 186 (504)
T ss_dssp SS-EEEEEEEETT-EEEEEEEE--------EETTTTEEEE--EEEE-TTEEEEEE-TTT---SEEEEESSEEEEEE----
T ss_pred CCceEEEEEEEecccceeEEEeeecccccceeeeeccccccccccCCCccEEEEcCCCCc--EEEEECCEEEEEeccccc
Q ss_pred CCceeEEeecC-----CcCeEEEec-----ccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCC-CCceEEEEEccC
Q 001319 483 SGRKLFNFEGH-----EAPVYSICP-----HHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAP-GHWCTTMLYSAD 549 (1101)
Q Consensus 483 ~~~~~~~~~~h-----~~~v~~v~~-----~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~-~~~v~~~~~s~d 549 (1101)
.+.....-... ..-+.+.+. ....++..++.+..+|.+..-.+.... ......+. .....++++..+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~lL~~e~G~l~~l~l~~~~~~i~i~~~g~~~~~~s~l~~l~~ 266 (504)
T PF10433_consen 187 SGDYSFLSIPSPPSSSSSLWTSWARPERNISYDKDGDRILLQDEDGDLYLLTLDNDGGSISITYLGTLCSIASSLTYLKN 266 (504)
T ss_dssp --TTEEEEE--H-HHHTS-EEEEEE------SSTTSSEEEEEETTSEEEEEEEEEEEEEEEEEEEEE--S-ESEEEEEST
T ss_pred ccccccccccCCccCCCceEEEEEeccccceecCCCCEEEEEeCCCeEEEEEEEECCCeEEEEEcCCcCChhheEEEEcC
Q ss_pred C--CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEe----CCCC------EEEEEe---CCCcEEEEEC
Q 001319 550 G--SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD----TTQN------HFLAVG---EDSQIKFWDM 614 (1101)
Q Consensus 550 ~--~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~----~~~~------~l~~~~---~dg~i~iwd~ 614 (1101)
| -.++.+.. +|+.+..|....-+.+..+.... ++..+++. .... .+++++ .+|.+++..-
T Consensus 267 g~d~lf~gs~~---gds~l~~~~~~~l~~~~~~~N~~--Pi~D~~v~~~~~~~~~~~~~~~~lv~~sG~g~~gsL~~lr~ 341 (504)
T PF10433_consen 267 GGDYLFVGSEF---GDSQLLQISLSNLEVLDSLPNWG--PIVDFCVVDSSNSGQPSNPSSDQLVACSGAGKRGSLRILRN 341 (504)
T ss_dssp T--EEEEEESS---S-EEEEEEESESEEEEEEE------SEEEEEEE-TSSSSS-------EEEEEESSGGG-EEEEEEE
T ss_pred CCEEEEEEEec---CCcEEEEEeCCCcEEEEeccCcC--CccceEEeccccCCCCcccccceEEEEECcCCCCcEEEEec
Q ss_pred CCCee--eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc--ccccccccccCCCcccccCcceeeeeeeccc
Q 001319 615 DNVNI--LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA--IGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1101)
Q Consensus 615 ~~~~~--~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 690 (1101)
.-+-. ......-.+...++.+....++...+..+....-+++.+. .....+.......+......+.+-.+. +.
T Consensus 342 Gi~~~~~~~~~~~l~~v~~iW~l~~~~~~~~~lv~S~~~~T~vl~~~~~d~~e~~~e~~~~~f~~~~~Tl~~~~~~--~~ 419 (504)
T PF10433_consen 342 GIGIEGLELASSELPGVTGIWTLKLSSSDHSYLVLSFPNETRVLQISEGDDGEEVEEVEEDGFDTDEPTLAAGNVG--DG 419 (504)
T ss_dssp SBEEE--EEEEEEESTEEEEEEE-SSSSSBSEEEEEESSEEEEEEES----SSEEEEE---TS-SSS-EEEEEEET--TT
T ss_pred cCCceeeeeeccCCCCceEEEEeeecCCCceEEEEEcCCceEEEEEecccCCcchhhhhhccCCCCCCCeEEEEcC--CC
Q ss_pred cccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC
Q 001319 691 SAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 770 (1101)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~ 770 (1101)
.+ +.+.+.+-+++..........|...
T Consensus 420 ~i--------------------------------------------------vQVt~~~i~l~~~~~~~~~~~w~~~--- 446 (504)
T PF10433_consen 420 RI--------------------------------------------------VQVTPKGIRLIDLEDGKLTQEWKPP--- 446 (504)
T ss_dssp EE--------------------------------------------------EEEESSEEEEEESSSTSEEEEEE-T---
T ss_pred eE--------------------------------------------------EEEecCeEEEEECCCCeEEEEEeCC---
Q ss_pred CCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCC-----C
Q 001319 771 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP-----P 845 (1101)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~-----~ 845 (1101)
....|.+.+.. ++..+++..++.+..+.+............ .
T Consensus 447 --------------------------------~~~~I~~a~~~-~~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (504)
T PF10433_consen 447 --------------------------------AGSIIVAASIN-DPQVLVALSGGELVYFELDDNKISVSDNDETILELD 493 (504)
T ss_dssp --------------------------------TS---SEEEES-SSEEEEEE-TTEEEEEEEETTEEEEEEE----EE-S
T ss_pred --------------------------------CCCeEEEEEEC-CCEEEEEEeCCcEEEEEEECCceeeeeeccccccCC
Q ss_pred CCeeEEEEec
Q 001319 846 PASTFLAFHP 855 (1101)
Q Consensus 846 ~~i~~l~~s~ 855 (1101)
..|.|+...|
T Consensus 494 ~eis~l~i~p 503 (504)
T PF10433_consen 494 NEISCLSIEP 503 (504)
T ss_dssp S-EEEEE---
T ss_pred CceEEEEeCC
|
... |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=92.30 E-value=7.6 Score=45.87 Aligned_cols=116 Identities=8% Similarity=0.073 Sum_probs=76.4
Q ss_pred ccEEEEEEcc--CCCEEEEEECCCeEEEEeecC-------C----------cccccceeeecccCcEEEEEEe--cCCCc
Q 001319 407 ISVSRVAWSP--DGNYVGVAFTKHLIQLYSYAG-------S----------NDLRQHSQIDAHVGAVNDLAFA--YPNKL 465 (1101)
Q Consensus 407 ~~v~~~~~sp--dg~~las~~~d~~i~vwd~~~-------~----------~~~~~~~~l~~h~~~V~~l~~s--~d~~~ 465 (1101)
..|+.|...- +...|+.|..||.|.+|.+++ . ..+++...+. -...++.+++. ...+
T Consensus 101 HtIN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r- 178 (717)
T PF08728_consen 101 HTINFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR- 178 (717)
T ss_pred ceeeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce-
Confidence 3566665554 567899999999999997631 0 0111222222 34478999998 5555
Q ss_pred eEEEEecCCceEEEEE--c-CCceeE-EeecCCcCeEEEecccCCC---cc-EEEEeccCCeEEEEec
Q 001319 466 LCVVTCGDDKLIKVWE--L-SGRKLF-NFEGHEAPVYSICPHHKEN---IQ-FIFSTAIDGKIKAWLY 525 (1101)
Q Consensus 466 ~~l~s~~~d~~v~iwd--~-~~~~~~-~~~~h~~~v~~v~~~~~~~---~~-~l~s~~~d~~i~~wd~ 525 (1101)
++|.++....|.||- . ..+... .-..|...|.+|+|.++.. |. .+++++-.|.+.+|++
T Consensus 179 -lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 -LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred -EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 788888888888887 3 222111 1113666799999876642 32 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG2247 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=92.08 E-value=0.044 Score=58.87 Aligned_cols=240 Identities=15% Similarity=0.140 Sum_probs=133.1
Q ss_pred EEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE
Q 001319 742 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 821 (1101)
Q Consensus 742 ~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 821 (1101)
...+.+.+..++.++.+..+..||-... ..... ........++|..+|..++.
T Consensus 39 ~~~w~~e~~nlavaca~tiv~~YD~agq----------------------~~le~-----n~tg~aldm~wDkegdvlav 91 (615)
T KOG2247|consen 39 IHRWRPEGHNLAVACANTIVIYYDKAGQ----------------------VILEL-----NPTGKALDMAWDKEGDVLAV 91 (615)
T ss_pred eeeEecCCCceehhhhhhHHHhhhhhcc----------------------eeccc-----CCchhHhhhhhccccchhhh
Confidence 3455666666777777777766653211 01110 13444556777777776665
Q ss_pred Ec--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCC
Q 001319 822 AT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 899 (1101)
Q Consensus 822 ~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 899 (1101)
.. .+.+.+||+.+......-.+-...-.-+.|++ +...++.|...|.+.|++..+.+.+-..-.|..+++++++.+.
T Consensus 92 lAek~~piylwd~n~eytqqLE~gg~~s~sll~wsK-g~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lE 170 (615)
T KOG2247|consen 92 LAEKTGPIYLWDVNSEYTQQLESGGTSSKSLLAWSK-GTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLE 170 (615)
T ss_pred hhhcCCCeeechhhhhhHHHHhccCcchHHHHhhcc-CCccccccccccceEEEeccchhhhhhhcccccceeEEEeccc
Confidence 54 68899999975433222112122223378999 8899999999999999998887766666569999999999987
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceEEe-ecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEE-----EcCCceeeeEe
Q 001319 900 LNILVSSGADAQLCVWSIDTWEKRKSVTIH-IPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY-----DASKMERIRQW 973 (1101)
Q Consensus 900 ~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~-----d~~~~~~~~~~ 973 (1101)
+ +.+.++.|..+.+-...+..... .... .+.....-....=.|..-|..+...-.+++.+. ..+....+ .+
T Consensus 171 d-~vil~dcd~~L~v~~qegeta~l-tevggepdnm~~~y~k~n~w~kage~m~sVvsgKkhl~yak~nE~D~pval-~f 247 (615)
T KOG2247|consen 171 D-YVILCDCDNTLSVTTQEGETASL-TEVGGEPDNMDFFYGKVNGWGKAGETMVSVVSGKKHLMYAKYNELDEPVAL-QF 247 (615)
T ss_pred c-eeeecCcHHHHHHhhhccceeee-eeccCccchhhhheeeeeccccccceeeeeeecHHHHHHHhhcCCCCccce-Ee
Confidence 5 55666666554443332211100 0000 000000000111122333444443222222211 11111112 33
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC 1016 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~ 1016 (1101)
... .+.+.|+.|=-||. |..+..-|.|..-...++++..
T Consensus 248 q~~---~gni~cyrwylDg~-i~igf~ag~iV~iS~h~aeLga 286 (615)
T KOG2247|consen 248 QEK---YGNIHCYRWYLDGY-ILIGFDAGYIVSISAHNAELGA 286 (615)
T ss_pred eec---CCceeEEEEecccc-ccccccceeEEEEeccchHHHH
Confidence 332 67788888888875 5557777777777777766544
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=92.07 E-value=5.8 Score=44.22 Aligned_cols=147 Identities=12% Similarity=0.033 Sum_probs=79.2
Q ss_pred CCeeEEEEecCCCCEEEEEe-----------CCC-cEEEEEeec--ce--EEEeeccCCCCeeEEEEcCCCCEEEEEeCC
Q 001319 846 PASTFLAFHPQDNNIIAIGT-----------EDS-TIHIYNVRV--DE--VKSKLKGHQKRITGLAFSTSLNILVSSGAD 909 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~-----------~dg-~v~iwd~~~--~~--~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D 909 (1101)
.....|+|.+ +|+++++-. ..+ .|.+++-.+ |+ ....+.........+++.+++ .++ +..+
T Consensus 14 ~~P~~ia~d~-~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G-lyV-~~~~ 90 (367)
T TIGR02604 14 RNPIAVCFDE-RGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG-VYV-ATPP 90 (367)
T ss_pred CCCceeeECC-CCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC-EEE-eCCC
Confidence 3456788888 777665542 223 677776442 22 223333334456889999988 444 4444
Q ss_pred CcEEEEECCCCccc---cceEEeecCCC---CCCCcceEEEcCCCCEEEE-EeC-------------------CeEEEEE
Q 001319 910 AQLCVWSIDTWEKR---KSVTIHIPAGK---TPTGDTRVQFNADQVRMLV-VHE-------------------TQLAIYD 963 (1101)
Q Consensus 910 g~v~lwd~~~~~~~---~~~~~~~~~~~---~~~~v~~~~~s~d~~~l~~-~~d-------------------~~i~v~d 963 (1101)
...++.|....... ....+...... .......++|.|||.+.++ +.. +.|.-++
T Consensus 91 ~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~ 170 (367)
T TIGR02604 91 DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYN 170 (367)
T ss_pred eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEe
Confidence 43334454332111 11111211111 1245778999999987775 311 3355555
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
.++++.. .+... -.....++|+++|+++++-.
T Consensus 171 pdg~~~e-~~a~G---~rnp~Gl~~d~~G~l~~tdn 202 (367)
T TIGR02604 171 PDGGKLR-VVAHG---FQNPYGHSVDSWGDVFFCDN 202 (367)
T ss_pred cCCCeEE-EEecC---cCCCccceECCCCCEEEEcc
Confidence 5544432 22221 34456899999999877644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.93 E-value=1.3 Score=53.34 Aligned_cols=148 Identities=11% Similarity=0.067 Sum_probs=96.4
Q ss_pred CCCCEeEEEecCCCCeEEEEc--CC-eEEEEECCCceEEE-----EeeC------CCCCeeEEEEecCCCCEEEEEeCCC
Q 001319 803 LEEAVPCIALSKNDSYVMSAT--GG-KISLFNMMTFKVMT-----TFMS------PPPASTFLAFHPQDNNIIAIGTEDS 868 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~--dg-~i~vwd~~~~~~~~-----~~~~------~~~~i~~l~~s~~~~~~la~g~~dg 868 (1101)
..-++..+...+|+...++.. +| .|..||+.+...-. -+.. ...-..++.|.|.-....|+...|+
T Consensus 99 k~~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dl 178 (1405)
T KOG3630|consen 99 KEIPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDL 178 (1405)
T ss_pred ccccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhcccc
Confidence 344566677778887665553 44 58999997543221 1111 1233567788873334456777899
Q ss_pred cEEEEEeecceE-EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC
Q 001319 869 TIHIYNVRVDEV-KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 869 ~v~iwd~~~~~~-~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
.|++..+..... ...+ .-....++++|+|.|+.++.|-..|++.-|...-.... .++.+.......|.+++|-..
T Consensus 179 sl~V~~~~~~~~~v~s~-p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~---~ip~Pp~~e~yrvl~v~Wl~t 254 (1405)
T KOG3630|consen 179 SLRVKSTKQLAQNVTSF-PVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKS---EIPEPPVEENYRVLSVTWLST 254 (1405)
T ss_pred chhhhhhhhhhhhhccc-CcccceeeEEeccccceeeEecCCCeEEEeecccceee---cccCCCcCCCcceeEEEEecc
Confidence 999887764322 2222 24567899999999999999999999998876543211 222222222478999999988
Q ss_pred CCEEEEE
Q 001319 948 QVRMLVV 954 (1101)
Q Consensus 948 ~~~l~~~ 954 (1101)
..++++.
T Consensus 255 ~eflvvy 261 (1405)
T KOG3630|consen 255 QEFLVVY 261 (1405)
T ss_pred eeEEEEe
Confidence 8888874
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=91.57 E-value=0.51 Score=32.56 Aligned_cols=33 Identities=18% Similarity=0.298 Sum_probs=26.7
Q ss_pred CcEEEEEEecCCc--eEEEEEeccCcEEEEecCCC
Q 001319 345 STVISMDFHPSHQ--TLLLVGSSNGEITLWELAMR 377 (1101)
Q Consensus 345 ~~V~~v~fspdg~--~llasg~~d~~i~iwd~~~~ 377 (1101)
+.|.+|.|||... -|||..-..|.|.|+|+.++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 4689999998543 47788888899999999853
|
It contains a characteristic DLL sequence motif. |
| >KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.47 E-value=3.6 Score=45.24 Aligned_cols=94 Identities=13% Similarity=0.076 Sum_probs=63.5
Q ss_pred CCCEEEEEEccCCCEEEEEeCCCcEEEEe---------CCCCc--eeEeeCCCCcCCCcccCCCCccceEEEEEecCC--
Q 001319 980 SAPISCAVYSCNSQLVFATFCDGNIGVFD---------ADTLR--LRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE-- 1046 (1101)
Q Consensus 980 ~~~v~~v~~s~dg~~l~s~~~dg~i~vwd---------~~~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d-- 1046 (1101)
.-.|..+..|+.|..++..+.+|.+.++= ++.|+ ..|+..+... ..+..+..+....++|+|+.
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~---~~ftss~~ltl~Qa~WHP~S~~ 179 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAE---RFFTSSTSLTLKQAAWHPSSIL 179 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccc---eeeccCCceeeeeccccCCccC
Confidence 45678889999999999999899654432 12232 2333322111 11113344566789999975
Q ss_pred CCEEEEEECCCeEEEEeCCCCCCccccCCC
Q 001319 1047 PNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1076 (1101)
Q Consensus 1047 ~~~l~s~~~Dg~v~iWd~~~~~~~~~~~~~ 1076 (1101)
+..|+.-+.|+.+++||+++....|..+.+
T Consensus 180 D~hL~iL~sdnviRiy~lS~~telylqpge 209 (741)
T KOG4460|consen 180 DPHLVLLTSDNVIRIYSLSEPTELYLQPGE 209 (741)
T ss_pred CceEEEEecCcEEEEEecCCcchhhccCCC
Confidence 667888889999999999999877776554
|
|
| >PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others | Back alignment and domain information |
|---|
Probab=91.27 E-value=57 Score=42.28 Aligned_cols=131 Identities=13% Similarity=0.145 Sum_probs=75.3
Q ss_pred cCCeEEEEECCCce--EEE--------------EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEe----ecceEEE
Q 001319 823 TGGKISLFNMMTFK--VMT--------------TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV----RVDEVKS 882 (1101)
Q Consensus 823 ~dg~i~vwd~~~~~--~~~--------------~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~----~~~~~~~ 882 (1101)
.+|+|.-||-.+.. -.. .+.-..+.|..+.+++ ...-++-|. +..+-+=-. .-|..+.
T Consensus 621 ~~G~i~~wD~ttq~W~~~~~kd~~~L~RG~D~~AYVLk~G~vk~l~i~~-~~~~~~~g~-~~~~a~~~~r~~~e~G~~l~ 698 (1774)
T PF11725_consen 621 QDGKIQYWDSTTQCWKDAGVKDIDQLKRGLDGNAYVLKDGKVKRLSINQ-EHPSIAHGD-NNVFALPQRRNKVELGDALE 698 (1774)
T ss_pred ccceEeeecCcchhhhhccCcCHHHHhccccCCceEecCCceeeeeccc-CCCccccCC-CcccccccccCCCCCCcccc
Confidence 47999999864321 100 0111345677777776 444343332 111111000 0122232
Q ss_pred eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEE
Q 001319 883 KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIY 962 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~ 962 (1101)
-+. ...|++++.-.+ +.+++....|.+.... ..+. +.......-.+.|..++......+.+...+|.+.-.
T Consensus 699 Gl~--~~~i~a~Avv~~-~~fvald~qg~lt~h~-k~g~-----p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 699 GLE--DRVITAFAVVND-NKFVALDDQGDLTAHQ-KPGR-----PVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred CCC--cCcceeEEEEcC-CceEEeccCCcccccc-CCCC-----CccCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 233 456888888755 5667788889999888 5554 222222222378999999999998888888887765
Q ss_pred Ec
Q 001319 963 DA 964 (1101)
Q Consensus 963 d~ 964 (1101)
+-
T Consensus 770 ~k 771 (1774)
T PF11725_consen 770 PK 771 (1774)
T ss_pred CH
Confidence 43
|
It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas []. |
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=91.25 E-value=12 Score=41.85 Aligned_cols=206 Identities=15% Similarity=0.093 Sum_probs=108.1
Q ss_pred EEEEEeCCCcEEEEEeecceEEEeeccC--CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCC
Q 001319 860 IIAIGTEDSTIHIYNVRVDEVKSKLKGH--QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 937 (1101)
Q Consensus 860 ~la~g~~dg~v~iwd~~~~~~~~~~~~h--~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 937 (1101)
.+.++..+|.|.-.|..++..+.....- ...+..-.+..+|+ ++.++.+|.+..+|..+|+..-...... . .
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~----~-~ 143 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGG----S-P 143 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCC----C-e
Confidence 3445577888888888777755322211 12223333333665 6778888988889998877654443332 0 0
Q ss_pred CcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeC--CCcEEEEeCCCCcee
Q 001319 938 GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC--DGNIGVFDADTLRLR 1015 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~--dg~i~vwd~~~~~~~ 1015 (1101)
......+-.++..++...++.+.-.+..+|...-.......-...+..-....++. ++.+.. ++.+.-.|..+|...
T Consensus 144 ~~~~~~v~~~~~v~~~s~~g~~~al~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-vy~~~~~~~~~~~a~~~~~G~~~ 222 (370)
T COG1520 144 YYASPPVVGDGTVYVGTDDGHLYALNADTGTLKWTYETPAPLSLSIYGSPAIASGT-VYVGSDGYDGILYALNAEDGTLK 222 (370)
T ss_pred EEecCcEEcCcEEEEecCCCeEEEEEccCCcEEEEEecCCccccccccCceeecce-EEEecCCCcceEEEEEccCCcEe
Confidence 12222333344444444578888888888877655433210011111111122333 444444 566777788888776
Q ss_pred EeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCccccCCC
Q 001319 1016 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1076 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~~~~~ 1076 (1101)
-............+.-...+....+. -+.-+..++.+|.+.-.+..+++..|+.+.+
T Consensus 223 w~~~~~~~~~~~~~~~~~~~~~~~v~----v~~~~~~~~~~g~~~~l~~~~G~~~W~~~~~ 279 (370)
T COG1520 223 WSQKVSQTIGRTAISTTPAVDGGPVY----VDGGVYAGSYGGKLLCLDADTGELIWSFPAG 279 (370)
T ss_pred eeeeeecccCcccccccccccCceEE----ECCcEEEEecCCeEEEEEcCCCceEEEEecc
Confidence 65321110000000000001111111 1223467778888999999999999988876
|
|
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=90.86 E-value=12 Score=40.94 Aligned_cols=164 Identities=13% Similarity=0.164 Sum_probs=94.0
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCc------EEEEEeecc----eEE-----EeeccCCC--------CeeEEEEcCCCC
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDST------IHIYNVRVD----EVK-----SKLKGHQK--------RITGLAFSTSLN 901 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~------v~iwd~~~~----~~~-----~~~~~h~~--------~V~~l~~s~d~~ 901 (1101)
-+.+..+.+.+.++. +++.+.+|. ++.+++... ..+ ..+..-.+ ..-+|++.++|.
T Consensus 19 ~GGlSgl~~~~~~~~-~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~ 97 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGR-FYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGS 97 (326)
T ss_pred cCcEeeEEEeCCCCE-EEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCC
Confidence 356788888863444 445566666 666665531 001 11111111 345788888888
Q ss_pred EEEEEeCC------CcEEEEECCCCccccceEEee---------cCCCCCCCcceEEEcCCCCEEEEE------eCC--e
Q 001319 902 ILVSSGAD------AQLCVWSIDTWEKRKSVTIHI---------PAGKTPTGDTRVQFNADQVRMLVV------HET--Q 958 (1101)
Q Consensus 902 ~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~---------~~~~~~~~v~~~~~s~d~~~l~~~------~d~--~ 958 (1101)
++++.-.+ -.|..++.. |.......+.. ..........+++++|||+.|.+. .|+ .
T Consensus 98 ~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~ 176 (326)
T PF13449_consen 98 FWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRA 176 (326)
T ss_pred EEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccc
Confidence 88887777 778888877 55544432221 112233678899999999955542 122 1
Q ss_pred -------EEE--EEcCC-ceeeeEeccCCC------CCCCEEEEEEccCCCEEEEEe-----CCCcEEEEeCC
Q 001319 959 -------LAI--YDASK-MERIRQWTPQDA------LSAPISCAVYSCNSQLVFATF-----CDGNIGVFDAD 1010 (1101)
Q Consensus 959 -------i~v--~d~~~-~~~~~~~~~~~~------h~~~v~~v~~s~dg~~l~s~~-----~dg~i~vwd~~ 1010 (1101)
+++ ||..+ ++....+..... ....|+.+.+-+|+++|+.== ....++|+.+.
T Consensus 177 ~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri~~v~ 249 (326)
T PF13449_consen 177 NPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRIYRVD 249 (326)
T ss_pred ccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEEEEEE
Confidence 444 45544 323333222111 257789999999999877521 34456665544
|
|
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.51 E-value=3.7 Score=49.71 Aligned_cols=101 Identities=13% Similarity=0.104 Sum_probs=65.1
Q ss_pred CCCEeEEEecCCCC--eEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE
Q 001319 804 EEAVPCIALSKNDS--YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 881 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~--~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~ 881 (1101)
.....++.|.|.-. .++.-.|+.|+|..+........--.-....++++|+| .|+.+++|...|++.-|... .+..
T Consensus 155 ~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WSp-rGKQl~iG~nnGt~vQy~P~-leik 232 (1405)
T KOG3630|consen 155 PVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWSP-RGKQLFIGRNNGTEVQYEPS-LEIK 232 (1405)
T ss_pred ccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcccceeeEEecc-ccceeeEecCCCeEEEeecc-ccee
Confidence 33455667776533 23333488888877653222211112345689999999 89999999999999988754 3333
Q ss_pred Eeecc----CCCCeeEEEEcCCCCEEEEE
Q 001319 882 SKLKG----HQKRITGLAFSTSLNILVSS 906 (1101)
Q Consensus 882 ~~~~~----h~~~V~~l~~s~d~~~l~s~ 906 (1101)
..+.+ -...|.+|+|-....+|++-
T Consensus 233 ~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 233 SEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred ecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 33321 14789999998777777654
|
|
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=90.50 E-value=11 Score=37.11 Aligned_cols=148 Identities=9% Similarity=0.053 Sum_probs=88.0
Q ss_pred CEEEEEeCCCcEEEEEee--cceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC------cEEEE---ECCCCccccce-
Q 001319 859 NIIAIGTEDSTIHIYNVR--VDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA------QLCVW---SIDTWEKRKSV- 926 (1101)
Q Consensus 859 ~~la~g~~dg~v~iwd~~--~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg------~v~lw---d~~~~~~~~~~- 926 (1101)
+.|..+.....|.+|++. ..+.+..|.. -+.|..+.++..|++|+|--.+. .+|+| +....+.....
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T-v~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v 107 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST-VGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV 107 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc-hhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence 455455667889999998 3455666653 48899999999999999964332 45554 33311100000
Q ss_pred -----------------EEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCcee-ee---EeccC-----CCCC
Q 001319 927 -----------------TIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMER-IR---QWTPQ-----DALS 980 (1101)
Q Consensus 927 -----------------~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~-~~---~~~~~-----~~h~ 980 (1101)
.+...+-.-.....+++..|-..-|++|.++.+.+|.+..... .. .+... +...
T Consensus 108 RiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~~~~l~lf~l~~~~~~~~~~~~lDFe~~l~~~~~~ 187 (215)
T PF14761_consen 108 RIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGCGNKLVLFTLKYQTIQSEKFSFLDFERSLIDHIDN 187 (215)
T ss_pred EEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEcCCEEEEEEEEEEEEecccccEEechhhhhheecC
Confidence 0000011111467788888887778888999999998765433 11 11110 0003
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 981 APISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 981 ~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
-....++|. +.|+|..+ +-.++|+.+.
T Consensus 188 ~~p~~v~ic--~~yiA~~s-~~ev~Vlkl~ 214 (215)
T PF14761_consen 188 FKPTQVAIC--EGYIAVMS-DLEVLVLKLE 214 (215)
T ss_pred ceEEEEEEE--eeEEEEec-CCEEEEEEEe
Confidence 335666665 56777776 5567776653
|
|
| >PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=90.41 E-value=1 Score=30.70 Aligned_cols=32 Identities=13% Similarity=0.263 Sum_probs=23.6
Q ss_pred ecCCCcEEEEEEecCCceEEEEEecc--CcEEEE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSN--GEITLW 372 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d--~~i~iw 372 (1101)
+.....-.+.+|||||++++.++..+ |.-.||
T Consensus 5 t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 5 TNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp S-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred ccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34556788999999999988887777 766666
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A .... |
| >COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.28 E-value=37 Score=38.46 Aligned_cols=72 Identities=14% Similarity=0.171 Sum_probs=48.5
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
....|..+.+...|. +-+|+.|| +..||..+++.+... ......+|..+.-+-.|+ +..|+.+| |.+.+..|
T Consensus 163 ~d~~V~aLv~D~~g~-lWvgT~dG-L~~fd~~~gkalql~--s~~~dk~I~al~~d~qg~---LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 163 KDTPVVALVFDANGR-LWVGTPDG-LSYFDAGRGKALQLA--SPPLDKAINALIADVQGR---LWVGTDQG-VYLQEAEG 234 (671)
T ss_pred cCccceeeeeeccCc-EEEecCCc-ceEEccccceEEEcC--CCcchhhHHHHHHHhcCc---EEEEeccc-eEEEchhh
Confidence 345788899988885 45677887 888898888766521 112335677777777776 67777554 66666555
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=90.15 E-value=36 Score=38.07 Aligned_cols=151 Identities=10% Similarity=0.095 Sum_probs=83.8
Q ss_pred eEEEEecCCCCEEEEEeCCCcEE-EEEeecceE--EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccc
Q 001319 849 TFLAFHPQDNNIIAIGTEDSTIH-IYNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKS 925 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~dg~v~-iwd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~ 925 (1101)
..+..++ ++.+++++. .|.+. -||- |.. ...-......++++.|.+++..++++ .+|.+ +|....++.-..
T Consensus 242 ~~v~~~~-dG~~~~vg~-~G~~~~s~d~--G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~ 315 (398)
T PLN00033 242 STVNRSP-DGDYVAVSS-RGNFYLTWEP--GQPYWQPHNRASARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEED 315 (398)
T ss_pred eeEEEcC-CCCEEEEEC-CccEEEecCC--CCcceEEecCCCccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccc
Confidence 3445566 677766665 34433 3332 221 11112234568999999998877655 55654 444444431110
Q ss_pred eEEeecC-CCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 926 VTIHIPA-GKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 926 ~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
....... ......+..+.|.+++..+++|..|.+.... +.|+.-........-..+...+.|.++++.+++| .+|.|
T Consensus 316 ~~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G-~~G~i 393 (398)
T PLN00033 316 FDFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG-NDGVL 393 (398)
T ss_pred cceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceEEEe-CCcEE
Confidence 0111111 1111357889999999999888888666653 4444433322111115678899998887766655 47777
Q ss_pred EEE
Q 001319 1005 GVF 1007 (1101)
Q Consensus 1005 ~vw 1007 (1101)
.-|
T Consensus 394 l~~ 396 (398)
T PLN00033 394 LRY 396 (398)
T ss_pred EEe
Confidence 655
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=90.10 E-value=0.96 Score=31.24 Aligned_cols=31 Identities=16% Similarity=0.241 Sum_probs=26.5
Q ss_pred ccEEEEEEccC-C--CEEEEEECCCeEEEEeecC
Q 001319 407 ISVSRVAWSPD-G--NYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 407 ~~v~~~~~spd-g--~~las~~~d~~i~vwd~~~ 437 (1101)
++|.++.|||+ + .+||.+-..+.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 47899999984 4 5888888889999999986
|
It contains a characteristic DLL sequence motif. |
| >PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12 | Back alignment and domain information |
|---|
Probab=90.04 E-value=29 Score=36.90 Aligned_cols=191 Identities=11% Similarity=0.101 Sum_probs=101.9
Q ss_pred EeEEEecCCCCeEEE--Ec-C----------CeEEEEECCCceEEEEeeCC------CCCeeEEEEecCCC----CEEEE
Q 001319 807 VPCIALSKNDSYVMS--AT-G----------GKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDN----NIIAI 863 (1101)
Q Consensus 807 v~~~~~s~dg~~la~--~~-d----------g~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~----~~la~ 863 (1101)
|..+.+.++|++-+. |. + -+|.+||+.+.+.++++.-+ ......+.+...++ .++..
T Consensus 3 V~~v~iD~~~rLWVlD~G~~~~~~~~~~~~~pKLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYI 82 (287)
T PF03022_consen 3 VQRVQIDECGRLWVLDSGRPNGLQPPKQVCPPKLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYI 82 (287)
T ss_dssp EEEEEE-TTSEEEEEE-CCHSSSSTTGHTS--EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEE
T ss_pred ccEEEEcCCCCEEEEeCCCcCCCCCCCCCCCcEEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEE
Confidence 455666666665443 21 1 26889999999988876543 23466777765222 23333
Q ss_pred Ee-CCCcEEEEEeecceEEEeeccC-------------------CCCeeEEEEcC---CCCEEEEEeCCCcEEEEECCCC
Q 001319 864 GT-EDSTIHIYNVRVDEVKSKLKGH-------------------QKRITGLAFST---SLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 864 g~-~dg~v~iwd~~~~~~~~~~~~h-------------------~~~V~~l~~s~---d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
+. ..+.|.|+|+.+++.-+.+..+ .+.+..++.+| ++++|.-..-.+ -++|.+.+.
T Consensus 83 tD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~~d~r~LYf~~lss-~~ly~v~T~ 161 (287)
T PF03022_consen 83 TDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPISPDGRWLYFHPLSS-RKLYRVPTS 161 (287)
T ss_dssp EETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTSTTS-EEEEEETT--SEEEEEEHH
T ss_pred eCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCCCCccEEEEEeCCC-CcEEEEEHH
Confidence 33 4468999999988765544332 12366666655 666666555433 244444332
Q ss_pred cccc-----ce----EEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCce---eeeEeccCCCCCCCEEEEE
Q 001319 921 EKRK-----SV----TIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKME---RIRQWTPQDALSAPISCAV 987 (1101)
Q Consensus 921 ~~~~-----~~----~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~---~~~~~~~~~~h~~~v~~v~ 987 (1101)
-... .. .++.. +........++++++|.+..+ ...+.|..|+..+.- ....+......-..+..+.
T Consensus 162 ~L~~~~~~~~~~~~~~v~~l-G~k~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~ 240 (287)
T PF03022_consen 162 VLRDPSLSDAQALASQVQDL-GDKGSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLK 240 (287)
T ss_dssp HHCSTT--HHH-HHHT-EEE-EE---SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEE
T ss_pred HhhCccccccccccccceec-cccCCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceee
Confidence 1110 00 01111 111135567889998888777 468899999988611 1112211111145788999
Q ss_pred Ecc--CCCEEEEEe
Q 001319 988 YSC--NSQLVFATF 999 (1101)
Q Consensus 988 ~s~--dg~~l~s~~ 999 (1101)
+.+ +|.+.+...
T Consensus 241 i~~~~~g~L~v~sn 254 (287)
T PF03022_consen 241 IDPEGDGYLWVLSN 254 (287)
T ss_dssp E-T--TS-EEEEE-
T ss_pred eccccCceEEEEEC
Confidence 998 787666554
|
5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B. |
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=89.96 E-value=8.3 Score=44.25 Aligned_cols=79 Identities=18% Similarity=0.269 Sum_probs=55.8
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
....++++.-+|.|+.++.+..||+|++|+.......+ +.....+-..+.|...| |++...|+.+.-|..+|
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qsk----i~~~~~p~~nlv~tnhg----l~~~tsdrr~la~~~dg 84 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSK----ICEEAKPKENLVFTNHG----LVTATSDRRALAWKEDG 84 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhh----hhhhcCCccceeeeccc----eEEEeccchhheeeccC
Confidence 45578888889999999999999999999987654322 11223344556676544 56677788888898777
Q ss_pred ceeEEee
Q 001319 485 RKLFNFE 491 (1101)
Q Consensus 485 ~~~~~~~ 491 (1101)
-..+.|.
T Consensus 85 vvqqqfd 91 (1636)
T KOG3616|consen 85 VVQQQFD 91 (1636)
T ss_pred cchhhcc
Confidence 6555553
|
|
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.79 E-value=3.2 Score=51.28 Aligned_cols=167 Identities=14% Similarity=0.237 Sum_probs=96.5
Q ss_pred CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
.|..+.....|...=..|-+-|-=++..+ +.|+.+.+|+++++..... +.+-...|..|
T Consensus 67 IP~el~eq~~~~~~~~~mGiFpeI~RaWi--TiDn~L~lWny~~~~e~~~-------------------~d~~shtIl~V 125 (1311)
T KOG1900|consen 67 IPDELLEQFSNIECKTDMGIFPEIGRAWI--TIDNNLFLWNYESDNELAE-------------------YDGLSHTILKV 125 (1311)
T ss_pred CCHHHHHHhcCcceeeeeccchhhcceEE--EeCCeEEEEEcCCCCcccc-------------------ccchhhhheee
Confidence 34444444445445555555555333444 4789999999998654431 44444455555
Q ss_pred E--------EccCCCEEEEEECCCeEEEEeecCCcccccce------eeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 413 A--------WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS------QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 413 ~--------~spdg~~las~~~d~~i~vwd~~~~~~~~~~~------~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
. |-|.=+++++-..--.|.++-+.-.+...... .+.-..-.|+|+....+|+ ++++|- || .
T Consensus 126 ~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGR--IF~~G~-dg--~ 200 (1311)
T KOG1900|consen 126 GLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGR--IFFAGR-DG--N 200 (1311)
T ss_pred eeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeeecCCceEEEEEeccCCc--EEEeec-CC--C
Confidence 3 33344455554444557776654332211111 1222355789999888888 555554 55 4
Q ss_pred EEE-----cCC---c-e----------------eEEee-cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC
Q 001319 479 VWE-----LSG---R-K----------------LFNFE-GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT 527 (1101)
Q Consensus 479 iwd-----~~~---~-~----------------~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~ 527 (1101)
+|. .+| + | +..+. .+..+|..+++.. ....+.+-+..|+|++|++..
T Consensus 201 lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~--SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 201 LYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN--SRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred EEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc--ccceeeeeccCceEEEEEccC
Confidence 444 111 1 1 11223 5677899998854 447889999999999999865
|
|
| >PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []) | Back alignment and domain information |
|---|
Probab=89.62 E-value=2 Score=41.70 Aligned_cols=31 Identities=32% Similarity=0.564 Sum_probs=25.9
Q ss_pred ccEEEEEEccCC------CEEEEEECCCeEEEEeecC
Q 001319 407 ISVSRVAWSPDG------NYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 407 ~~v~~~~~spdg------~~las~~~d~~i~vwd~~~ 437 (1101)
..|.+++|||-| -+||+.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 389999999954 4788899999999998764
|
The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 []. |
| >PF13449 Phytase-like: Esterase-like activity of phytase | Back alignment and domain information |
|---|
Probab=88.74 E-value=28 Score=38.01 Aligned_cols=111 Identities=12% Similarity=0.156 Sum_probs=67.8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCc------EEEEECCCCc-------cccceEEeecCCCCC----CCcceEEEcCCCCE
Q 001319 888 QKRITGLAFSTSLNILVSSGADAQ------LCVWSIDTWE-------KRKSVTIHIPAGKTP----TGDTRVQFNADQVR 950 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~s~Dg~------v~lwd~~~~~-------~~~~~~~~~~~~~~~----~~v~~~~~s~d~~~ 950 (1101)
-+.+..|.+.+++..++..+++|. +...++.... ......+....+... ....++++.++|.+
T Consensus 19 ~GGlSgl~~~~~~~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 19 FGGLSGLDYDPDDGRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred cCcEeeEEEeCCCCEEEEEECCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 356788999876667777788877 6666655411 011111222222111 14457888888888
Q ss_pred EEEEe-C------CeEEEEEcCCceeeeEeccCC------------CCCCCEEEEEEccCCCEEEEEe
Q 001319 951 MLVVH-E------TQLAIYDASKMERIRQWTPQD------------ALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 951 l~~~~-d------~~i~v~d~~~~~~~~~~~~~~------------~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
+++.. + ..|..++.. |+.+..+.... ......-+++++|||+.|+++.
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 77754 4 678888876 66655542111 1367789999999999766654
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=88.74 E-value=16 Score=42.28 Aligned_cols=44 Identities=14% Similarity=0.201 Sum_probs=29.0
Q ss_pred CccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCccccCCC
Q 001319 1033 QTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPP 1076 (1101)
Q Consensus 1033 ~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~~~~~ 1076 (1101)
+-..+.++.+.+.++.+++|+-.-..|...|..+++-.|.+.++
T Consensus 269 DW~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~Wilg~~ 312 (477)
T PF05935_consen 269 DWLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIKWILGPP 312 (477)
T ss_dssp BS--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EEEEES-S
T ss_pred CccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEEEEeCCC
Confidence 33456689999965666666655558999999999988888776
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=88.45 E-value=15 Score=33.04 Aligned_cols=119 Identities=16% Similarity=0.104 Sum_probs=0.0
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEee--------cceEEEeeccCCCCeeEEEEcC----CCCEEEEEeCCCcEEEE
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVR--------VDEVKSKLKGHQKRITGLAFST----SLNILVSSGADAQLCVW 915 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~--------~~~~~~~~~~h~~~V~~l~~s~----d~~~l~s~s~Dg~v~lw 915 (1101)
|..-.|.. ....|+.++.-|+|.|++.. ....+..+. -...|++|+-.+ +++-++.-+....+..|
T Consensus 1 VaiGkfDG-~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~t~llaY 78 (136)
T PF14781_consen 1 VAIGKFDG-VHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQTSLLAY 78 (136)
T ss_pred CeEEEeCC-CceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEeccceEEEE
Q ss_pred ECCCCccccceEEeecCCCCCCCcceEEE----cCCCCEEEEEeCCeEEEEEcCCceeeeEecc
Q 001319 916 SIDTWEKRKSVTIHIPAGKTPTGDTRVQF----NADQVRMLVVHETQLAIYDASKMERIRQWTP 975 (1101)
Q Consensus 916 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~----s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~ 975 (1101)
|+......-...+. ..+.++.+ ..+..++++|.+..|.-||.+..+.......
T Consensus 79 DV~~N~d~Fyke~~-------DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~fWtVtg 135 (136)
T PF14781_consen 79 DVENNSDLFYKEVP-------DGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIFWTVTG 135 (136)
T ss_pred EcccCchhhhhhCc-------cceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEEEEecc
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=88.34 E-value=32 Score=37.85 Aligned_cols=23 Identities=13% Similarity=0.260 Sum_probs=15.4
Q ss_pred CCCEEEEEeCC-----CcEEEEECCCCc
Q 001319 899 SLNILVSSGAD-----AQLCVWSIDTWE 921 (1101)
Q Consensus 899 d~~~l~s~s~D-----g~v~lwd~~~~~ 921 (1101)
++++++.||.+ ..+.+||..+.+
T Consensus 85 ~~~iyv~GG~~~~~~~~~v~~yd~~t~~ 112 (341)
T PLN02153 85 GTKLYIFGGRDEKREFSDFYSYDTVKNE 112 (341)
T ss_pred CCEEEEECCCCCCCccCcEEEEECCCCE
Confidence 56677777754 247788887754
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=88.21 E-value=36 Score=35.53 Aligned_cols=74 Identities=19% Similarity=0.243 Sum_probs=51.4
Q ss_pred CCeEEEEECCCceEEEEeeC--CCCCeeEEEEec-----CCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC------C
Q 001319 824 GGKISLFNMMTFKVMTTFMS--PPPASTFLAFHP-----QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK------R 890 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~--~~~~i~~l~~s~-----~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~------~ 890 (1101)
-|.|-+||+ .|..++++.. .-..-..|+..| -.+.+|+---.||+|-.||..+++.+..+....+ .
T Consensus 221 ~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~G 299 (336)
T TIGR03118 221 LGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDG 299 (336)
T ss_pred cceEEEEcC-CCcEEEEeccCCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecC
Confidence 467999998 4677776642 334455666655 2467777767899999999999988877765433 3
Q ss_pred eeEEEEcC
Q 001319 891 ITGLAFST 898 (1101)
Q Consensus 891 V~~l~~s~ 898 (1101)
.+.|+|..
T Consensus 300 LWgL~fGn 307 (336)
T TIGR03118 300 LWSLTFGN 307 (336)
T ss_pred eEEeeeCC
Confidence 56677754
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=88.08 E-value=18 Score=35.06 Aligned_cols=107 Identities=9% Similarity=0.032 Sum_probs=61.8
Q ss_pred CccEEEEeccCC--eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC
Q 001319 507 NIQFIFSTAIDG--KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584 (1101)
Q Consensus 507 ~~~~l~s~~~d~--~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~ 584 (1101)
+|.++.+.+.-| .|++||+.+++...........+..=-...-|.++..-.. .++.-..+|..+.+++..+.-..
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw---~egvaf~~d~~t~~~lg~~~y~G 131 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTW---KEGVAFKYDADTLEELGRFSYEG 131 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEe---ccceeEEEChHHhhhhcccccCC
Confidence 456777776544 6999999988877655443222211111122333332222 47778889988888877765433
Q ss_pred CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 585 KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
. -.. ...|+..|+.+....+++.-|.++....
T Consensus 132 e--GWg--Lt~d~~~LimsdGsatL~frdP~tfa~~ 163 (262)
T COG3823 132 E--GWG--LTSDDKNLIMSDGSATLQFRDPKTFAEL 163 (262)
T ss_pred c--cee--eecCCcceEeeCCceEEEecCHHHhhhc
Confidence 2 222 3345666777766667777776654433
|
|
| >smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2 | Back alignment and domain information |
|---|
Probab=87.91 E-value=43 Score=36.05 Aligned_cols=210 Identities=12% Similarity=-0.008 Sum_probs=102.4
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCe--EEEEECCCceEE---------------EEeeCCCCCeeEEEEecCCCCEEEEEe
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGK--ISLFNMMTFKVM---------------TTFMSPPPASTFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~--i~vwd~~~~~~~---------------~~~~~~~~~i~~l~~s~~~~~~la~g~ 865 (1101)
+...|+++.+.+..+.|++-++.. ++++++...... ...-.+.......+........++++.
T Consensus 41 ~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L~~~~~~~~~~~~~~~~~~~~~~~~tkGc~~~~v~~~~~~~~l~~A 120 (302)
T smart00036 41 GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSALVEKKEALGSARLVIRKNVLTKIPDTKGCHLCAVVNGKRSLFLCVA 120 (302)
T ss_pred CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHhhhhhhccCCccccccccceEeCCcCCceEEEEEEcCCCcEEEEEE
Confidence 667899999999888888777665 999998433210 111123333344444431222333444
Q ss_pred CCCcEEEEEeecc--e--EEEee---c-cCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEECCC--CccccceEEeecCC
Q 001319 866 EDSTIHIYNVRVD--E--VKSKL---K-GHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDT--WEKRKSVTIHIPAG 933 (1101)
Q Consensus 866 ~dg~v~iwd~~~~--~--~~~~~---~-~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~lwd~~~--~~~~~~~~~~~~~~ 933 (1101)
...+|.++..... + ....+ . .-..++..+..+++ ...++.|+..+-..++++.. ...... .......
T Consensus 121 ~~~~i~l~~~~~~~~~f~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~lcvG~~~~~~~~~~~~~~~~~~~d~-sl~~~~~ 199 (302)
T smart00036 121 LQSSVVLLQWYNPLKKFKLFKSKFLFPLISPVPVFVELVSSSFERPGICIGSDKGGGDVVQFHESLVSKEDL-SLPFLSE 199 (302)
T ss_pred cCCeEEEEEccChhhhhhhhcccccccCCCCccceEeeecccccceEEEEEEcCCCCeEEEEeecccccccc-ccccccc
Confidence 4567777655432 1 11110 0 01133444444433 45677776642345555533 111000 0000000
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 934 KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 934 ~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
.......++..-+++.+|++.++ ...+.|....+..+.....- .....++++. ..+|+.-. +..|.|+++.+++
T Consensus 200 ~~~~~p~~i~~l~~~e~Llc~~~-~~v~Vn~~G~~~~r~~~l~w--~~~p~~~~~~--~pyll~~~-~~~ievr~l~~~~ 273 (302)
T smart00036 200 ETSLKPISVVQVPRDEFLLCYDE-FGVFVNLYGKRRSRNPILHW--EFMPESFAYH--SPYLLAFH-DNGIEIRSIKTGE 273 (302)
T ss_pred ccccCceEEEEECCCeEEEEECc-EEEEEeCCCCccccceEEEc--CCcccEEEEE--CCEEEEEc-CCcEEEEECCCCc
Confidence 00002333333445555555443 34444444212211111111 4455677776 45666655 5559999999999
Q ss_pred eeEeeC
Q 001319 1014 LRCYIA 1019 (1101)
Q Consensus 1014 ~~~~~~ 1019 (1101)
++..+.
T Consensus 274 l~q~i~ 279 (302)
T smart00036 274 LLQELA 279 (302)
T ss_pred eEEEEe
Confidence 888776
|
Unpublished observations. |
| >KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.38 E-value=21 Score=44.64 Aligned_cols=147 Identities=12% Similarity=0.219 Sum_probs=92.7
Q ss_pred eCCCcEEEEEeecceEEEeeccCCCCeeEEEEc--------CCCCEEEEEeCCCcEEEEECCCCccccceEE--e-ecCC
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS--------TSLNILVSSGADAQLCVWSIDTWEKRKSVTI--H-IPAG 933 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s--------~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~--~-~~~~ 933 (1101)
+.|+.+.+|+..++.....+.+-+..|..+..- |.=++|...+.--.|.++-+.-.+....... . ....
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~~~i~ 175 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTSFKIS 175 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccceeee
Confidence 358899999999987788888777777777653 2224444444455577776543322211111 0 0011
Q ss_pred CCCCCcceEEEcCCCCEEEEEeCCeEE--EEEcCCc---e---ee-----------eE-eccCCCCCCCEEEEEEccCCC
Q 001319 934 KTPTGDTRVQFNADQVRMLVVHETQLA--IYDASKM---E---RI-----------RQ-WTPQDALSAPISCAVYSCNSQ 993 (1101)
Q Consensus 934 ~~~~~v~~~~~s~d~~~l~~~~d~~i~--v~d~~~~---~---~~-----------~~-~~~~~~h~~~v~~v~~s~dg~ 993 (1101)
..+..+.++....+|+.+.+|.||.|+ +|....+ + .+ .. +.....+..+|..+++...-.
T Consensus 176 ~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~ 255 (1311)
T KOG1900|consen 176 VDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRN 255 (1311)
T ss_pred cCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccc
Confidence 112568888888999999999988443 2222211 0 00 00 111113477999999988888
Q ss_pred EEEEEeCCCcEEEEeCCC
Q 001319 994 LVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 994 ~l~s~~~dg~i~vwd~~~ 1011 (1101)
.|.+-++.|+|++||+..
T Consensus 256 IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 256 ILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred eeeeeccCceEEEEEccC
Confidence 899999999999999987
|
|
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.03 E-value=15 Score=46.33 Aligned_cols=197 Identities=10% Similarity=0.131 Sum_probs=93.8
Q ss_pred CCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCC-CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
.......++|+|.-.++|.+. .|.|+++-...-+.......... .+..+.+-. ..........+..+.+|.......
T Consensus 34 ~~~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve~~~~~~~~~~~~~~~~~~~~-~~s~~~~l~~~~~~~~~~~~~~~~ 112 (993)
T KOG1983|consen 34 FPSTPSALAFDPTQGLLAIGTRTGAIKIYGQPGVEFVGLHPKQNQINVTRIELLV-GISRNLVLSDDDSLHLWSIKIKTG 112 (993)
T ss_pred CCCCCcceeeccccceEEEEEecccEEEecccceEEEeccccccchhhhheeeee-cccccceeecccceeeecccccce
Confidence 344566789999999999998 89999997654333322221111 222222222 122233344555666666543221
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe-----------------------------ec
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-----------------------------IP 931 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-----------------------------~~ 931 (1101)
+. +...+++....+--.+ .-+ ..+.+++||+.-.......... ..
T Consensus 113 ~~----~~~~~~~~~~~~~~~~-~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~ 186 (993)
T KOG1983|consen 113 VF----LKQEITSFVTDPPPDW-LIG-ENGLVKVSDVLRHQLSDLKYAGTESSNFVPYESLSPTLSIEGLVIDLDTVLIS 186 (993)
T ss_pred ee----cCCcceeccCCCCcch-hcc-cCceeeEeeechhhhccceeccccccccceeeeeccceeeeccccccccceee
Confidence 11 1112222221111112 222 4455555554321111000000 00
Q ss_pred CCCC-------CCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcE
Q 001319 932 AGKT-------PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNI 1004 (1101)
Q Consensus 932 ~~~~-------~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i 1004 (1101)
..+. ...+.+..+......+..+..+.+.+|+.........+... ....+.++..++++..||.+
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~v~~h~Dgs~ 258 (993)
T KOG1983|consen 187 LPDAYLGLSLIEYESLQVLYYSPTKILIGFNRGLVVIKDRASKYVQSAYLPN--------GQLESRDGSHFVSYHTDGSY 258 (993)
T ss_pred cccccccccccccccceeeeecCCCcceeeeeeeeeehhcccccchhhcccc--------cccCccCCceEEEEEecCCE
Confidence 0000 02233333333344444444455555555443333333322 11118899999999999999
Q ss_pred EEEeCCCCce
Q 001319 1005 GVFDADTLRL 1014 (1101)
Q Consensus 1005 ~vwd~~~~~~ 1014 (1101)
..||...+..
T Consensus 259 ~fWd~s~g~~ 268 (993)
T KOG1983|consen 259 AFWDVSSGKL 268 (993)
T ss_pred EeeecCCCce
Confidence 9999999866
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=86.85 E-value=4 Score=48.08 Aligned_cols=135 Identities=10% Similarity=0.104 Sum_probs=77.5
Q ss_pred EEEEEEecC-CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc--cCCCEEEE
Q 001319 347 VISMDFHPS-HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS--PDGNYVGV 423 (1101)
Q Consensus 347 V~~v~fspd-g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s--pdg~~las 423 (1101)
|+.|....= |..+|+.+..||.|.+|.+++=-......-.-.+........+..........++++++. ...++||+
T Consensus 103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV 182 (717)
T PF08728_consen 103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV 182 (717)
T ss_pred eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence 444443332 234677888999999998643110000000000000000000111122245589999999 88999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCC----ceEEEEecCCceEEEEE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNK----LLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~----~~~l~s~~~d~~v~iwd 481 (1101)
+++...|.||-......-.....-..|...|-+|+|.++.. ...+++++-.|.+.+|+
T Consensus 183 SsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~ 244 (717)
T PF08728_consen 183 SSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFK 244 (717)
T ss_pred ecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEE
Confidence 99999898887765321111111123667899999988651 13688899999988877
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=86.76 E-value=88 Score=38.46 Aligned_cols=173 Identities=13% Similarity=0.145 Sum_probs=93.6
Q ss_pred eEEEEECCCceEEEEeeCCCC----CeeEEEEecCCCC-EEEEEe-----------CCCcEEEEEeec-ceEEEeec--c
Q 001319 826 KISLFNMMTFKVMTTFMSPPP----ASTFLAFHPQDNN-IIAIGT-----------EDSTIHIYNVRV-DEVKSKLK--G 886 (1101)
Q Consensus 826 ~i~vwd~~~~~~~~~~~~~~~----~i~~l~~s~~~~~-~la~g~-----------~dg~v~iwd~~~-~~~~~~~~--~ 886 (1101)
.|+++|..+++.+..+....+ .+..+.|+..+.. ++++|. .+|.++.|++.. |+.+.-+. .
T Consensus 854 ~I~~~d~~s~~~~~~~~l~~ne~a~~v~~~~fs~~~~~~~~~v~~~~~~~l~~~~~~~g~~ytyk~~~~g~~lellh~T~ 933 (1205)
T KOG1898|consen 854 SIRVFDPKSGKIICLVELGQNEAAFSVCAVDFSSSEYQPFVAVGVATTEQLDSKSISSGFVYTYKFVRNGDKLELLHKTE 933 (1205)
T ss_pred eEEEEcCCCCceEEEEeecCCcchhheeeeeeccCCCceEEEEEeeccccccccccCCCceEEEEEEecCceeeeeeccC
Confidence 378888888777666553222 3666777663333 455544 345578887754 33222221 1
Q ss_pred CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeE--EEEE
Q 001319 887 HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQL--AIYD 963 (1101)
Q Consensus 887 h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i--~v~d 963 (1101)
-.++|. +..|-+.++. ++....+++||+...+.+....... .+..|+.+.+ .+.++++|+ ...+ ..|+
T Consensus 934 ~~~~v~--Ai~~f~~~~L-agvG~~l~~YdlG~K~lLRk~e~k~----~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 934 IPGPVG--AICPFQGRVL-AGVGRFLRLYDLGKKKLLRKCELKF----IPNRISSIQT--YGARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred CCccce--EEeccCCEEE-EecccEEEEeeCChHHHHhhhhhcc----CceEEEEEee--cceEEEEeeccceEEEEEEe
Confidence 223443 4455555544 4455679999998876655443332 1133444433 455667765 2233 3444
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
-...+.+.-.... -...|+++.+- |-..+|.|..-|.+.+-.+.
T Consensus 1005 ~~~n~l~~fadD~--~pR~Vt~~~~l-D~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1005 REDNQLIVFADDP--VPRHVTALELL-DYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred cCCCeEEEEeCCC--ccceeeEEEEe-cCCceeeccccCcEEEEECC
Confidence 4444433332221 14556666665 44457777777777776554
|
|
| >COG1770 PtrB Protease II [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=86.57 E-value=72 Score=37.27 Aligned_cols=253 Identities=12% Similarity=0.077 Sum_probs=129.4
Q ss_pred CEeEEEecCCCCeEEEEcC--C----eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCc---EEEEEee
Q 001319 806 AVPCIALSKNDSYVMSATG--G----KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDST---IHIYNVR 876 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~d--g----~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~---v~iwd~~ 876 (1101)
.+-.++.|||++++|.+-| | ++++-|+.+++.+.... .+....++|.+ |++.|.....|-. =++|.-.
T Consensus 130 ~Lg~~~~s~D~~~la~s~D~~G~e~y~lr~kdL~tg~~~~d~i--~~~~~~~~Wa~-d~~~lfYt~~d~~~rp~kv~~h~ 206 (682)
T COG1770 130 SLGAASISPDHNLLAYSVDVLGDEQYTLRFKDLATGEELPDEI--TNTSGSFAWAA-DGKTLFYTRLDENHRPDKVWRHR 206 (682)
T ss_pred eeeeeeeCCCCceEEEEEecccccEEEEEEEecccccccchhh--cccccceEEec-CCCeEEEEEEcCCCCcceEEEEe
Confidence 4567889999999998853 2 39999999988765432 23466789999 6766665554432 2344332
Q ss_pred cce----EEEeeccCCC-CeeEEEEcCCCCEEEEEeCC---CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCC
Q 001319 877 VDE----VKSKLKGHQK-RITGLAFSTSLNILVSSGAD---AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ 948 (1101)
Q Consensus 877 ~~~----~~~~~~~h~~-~V~~l~~s~d~~~l~s~s~D---g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~ 948 (1101)
-+. -...+..... --.++--+.+.++|+....| ..+++.+.+..+...........++. ......+
T Consensus 207 ~gt~~~~d~lvyeE~d~~f~~~v~~s~s~~yi~i~~~~~~tsE~~ll~a~~p~~~p~vv~pr~~g~e------Y~~eh~~ 280 (682)
T COG1770 207 LGTPGSSDELVYEEKDDRFFLSVGRSRSEAYIVISLGSHITSEVRLLDADDPEAEPKVVLPRENGVE------YSVEHGG 280 (682)
T ss_pred cCCCCCcceEEEEcCCCcEEEEeeeccCCceEEEEcCCCcceeEEEEecCCCCCceEEEEEcCCCcE------EeeeecC
Confidence 221 1111211111 12233334455666654433 45777777765544333333222211 1112224
Q ss_pred CEEEE-Ee-CC-eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC---cEEEEeCCCCceeEeeCCCC
Q 001319 949 VRMLV-VH-ET-QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG---NIGVFDADTLRLRCYIAPST 1022 (1101)
Q Consensus 949 ~~l~~-~~-d~-~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg---~i~vwd~~~~~~~~~~~~~~ 1022 (1101)
.++.+ .. ++ ..+|+..........+...-.|...+.--.|+--..+|+....++ .|++++.++++... +.
T Consensus 281 d~f~i~sN~~gknf~l~~ap~~~~~~~w~~~I~h~~~~~l~~~~~f~~~lVl~eR~~glp~v~v~~~~~~~~~~-i~--- 356 (682)
T COG1770 281 DRFYILSNADGKNFKLVRAPVSADKSNWRELIPHREDVRLEGVDLFADHLVLLERQEGLPRVVVRDRKTGEERG-IA--- 356 (682)
T ss_pred cEEEEEecCCCcceEEEEccCCCChhcCeeeeccCCCceeeeeeeeccEEEEEecccCCceEEEEecCCCceee-EE---
Confidence 44443 22 33 455555433111111222122355555566666677777655433 58889998887655 22
Q ss_pred cCCCcccCCCCccceEEEEEecC-C-CCEEEEEE---CCCeEEEEeCCCCCCccccCCCCCC
Q 001319 1023 YLSPSVLNGSQTVYPLVVAAHPL-E-PNQFAIGL---TDGSVKVMEPSESEGKWGVSPPVDN 1079 (1101)
Q Consensus 1023 ~~~~~~~~h~~~~~~~~l~~~p~-d-~~~l~s~~---~Dg~v~iWd~~~~~~~~~~~~~~~~ 1079 (1101)
..+..+.+.+..++. + ..+.++.+ .-.++.=+|+.+++.+.--..++.+
T Consensus 357 --------f~~~ay~~~l~~~~e~~s~~lR~~ysS~ttP~~~~~~dm~t~er~~LkqqeV~~ 410 (682)
T COG1770 357 --------FDDEAYSAGLSGNPEFDSDRLRYSYSSMTTPATLFDYDMATGERTLLKQQEVPG 410 (682)
T ss_pred --------ecchhhhccccCCCCCCCccEEEEeecccccceeEEeeccCCcEEEEEeccCCC
Confidence 123333344444332 1 12222222 2356777889999855544455544
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.44 E-value=21 Score=39.52 Aligned_cols=149 Identities=8% Similarity=0.086 Sum_probs=89.3
Q ss_pred EEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCC------CccEEEEeccCCeEEEEecCCCC
Q 001319 457 LAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE------NIQFIFSTAIDGKIKAWLYDTMG 529 (1101)
Q Consensus 457 l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~------~~~~l~s~~~d~~i~~wd~~~~~ 529 (1101)
+-...+.+.+++..|+....++--| ..|+.+..+.-|... -+.+.|.. +.+.|+ |-.+..|.-.|.+...
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 3344444445666777777888888 889999888877765 34444421 123444 4445555445554444
Q ss_pred eeeeccCCCCce-----EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 530 SRVDYDAPGHWC-----TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 530 ~~~~~~~~~~~v-----~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
............ .+..- ...-+++.++. .|-|++||.-..+....+++... .|..+..+.+|+++++.+
T Consensus 549 NKi~v~esKdY~tKn~Fss~~t-TesGyIa~as~----kGDirLyDRig~rAKtalP~lG~-aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKDYKTKNKFSSGMT-TESGYIAAASR----KGDIRLYDRIGKRAKTALPGLGD-AIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehhcccccccccccc-ccCceEEEecC----CCceeeehhhcchhhhcCccccc-ceeeeEeecCCcEEEEee
Confidence 222222111212 22222 23457888875 77799999765555555666555 677788999999988877
Q ss_pred CCCcEEEEECC
Q 001319 605 EDSQIKFWDMD 615 (1101)
Q Consensus 605 ~dg~i~iwd~~ 615 (1101)
.. .+.+-|+.
T Consensus 623 k~-yllL~d~~ 632 (776)
T COG5167 623 KN-YLLLTDVP 632 (776)
T ss_pred cc-eEEEEecc
Confidence 54 56666653
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=86.31 E-value=2.4 Score=42.80 Aligned_cols=74 Identities=11% Similarity=0.148 Sum_probs=52.5
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccccce-EE-eecCC------CCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCc
Q 001319 896 FSTSLNILVSSGADAQLCVWSIDTWEKRKSV-TI-HIPAG------KTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 967 (1101)
Q Consensus 896 ~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~-~~-~~~~~------~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 967 (1101)
+..++++|++.+.+|.+++||+.+++..... .+ ..... .....|..+.++.+|.-+++-+++..+.|+.+=+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~lsng~~y~y~~~L~ 97 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLSNGDSYSYSPDLG 97 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEeCCCEEEeccccc
Confidence 3456889999999999999999998765333 11 11110 2226778888888998888877888888887644
Q ss_pred ee
Q 001319 968 ER 969 (1101)
Q Consensus 968 ~~ 969 (1101)
.-
T Consensus 98 ~W 99 (219)
T PF07569_consen 98 CW 99 (219)
T ss_pred ee
Confidence 33
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family | Back alignment and domain information |
|---|
Probab=86.07 E-value=67 Score=36.45 Aligned_cols=63 Identities=14% Similarity=0.090 Sum_probs=38.9
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
.-+..+.|+|.|||+ +|++--..|.|++++-.++.......+ +......-.+....|+|+||-
T Consensus 28 GL~~Pw~maflPDG~-llVtER~~G~I~~v~~~~~~~~~~~~l------------~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 28 GLNKPWALLWGPDNQ-LWVTERATGKILRVNPETGEVKVVFTL------------PEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CCCCceEEEEcCCCe-EEEEEecCCEEEEEeCCCCceeeeecC------------CceeccCCCCceeeEEECCCc
Confidence 345789999999997 666543369999998655432110000 100011136788999999984
|
PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=85.87 E-value=1e+02 Score=38.32 Aligned_cols=159 Identities=12% Similarity=0.132 Sum_probs=101.7
Q ss_pred CCCCEeEEEec---C----CCCeEEEEcCCeEEEEECC------C---------ceEEEEeeC---CCCCeeEEEEecCC
Q 001319 803 LEEAVPCIALS---K----NDSYVMSATGGKISLFNMM------T---------FKVMTTFMS---PPPASTFLAFHPQD 857 (1101)
Q Consensus 803 ~~~~v~~~~~s---~----dg~~la~~~dg~i~vwd~~------~---------~~~~~~~~~---~~~~i~~l~~s~~~ 857 (1101)
...+|..|+|+ . ..++|++-....+.|+... . ..++..+.. -..+...++|.|.+
T Consensus 78 ~~~PI~qI~fa~~~~~~~~~~~~l~Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP~~ 157 (765)
T PF10214_consen 78 DGSPIKQIKFATLSESFDEKSRWLAVRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNPWD 157 (765)
T ss_pred CCCCeeEEEecccccccCCcCcEEEEEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEeccCc
Confidence 66788888888 2 2358888778888888721 1 122333332 23457789999988
Q ss_pred CCEEEEEeCCCcEEEEEeecce-----EEEeeccCCCC----------eeEEEEcCCCCEEEEEeCCCcEEEEECCCCcc
Q 001319 858 NNIIAIGTEDSTIHIYNVRVDE-----VKSKLKGHQKR----------ITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 922 (1101)
Q Consensus 858 ~~~la~g~~dg~v~iwd~~~~~-----~~~~~~~h~~~----------V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~ 922 (1101)
...||+.+..|...||++..+. .......+.+. -..+.|.++-+.|+.++.. .+.++|+.+...
T Consensus 158 ~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~r~-~l~~~d~~~~~~ 236 (765)
T PF10214_consen 158 QRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRILWVSDSNRLLVCNRS-KLMLIDFESNWQ 236 (765)
T ss_pred cceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeEecCCCCEEEEEcCC-ceEEEECCCCCc
Confidence 8899999999999999993211 11111112222 3478898888888877754 589999998765
Q ss_pred ccceEEeecCCCCCCCcceEEEcCCC-CEEEEEeCCeEEEEEcCC
Q 001319 923 RKSVTIHIPAGKTPTGDTRVQFNADQ-VRMLVVHETQLAIYDASK 966 (1101)
Q Consensus 923 ~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~~d~~i~v~d~~~ 966 (1101)
... .........+..+.-+++. .++++-....|...++..
T Consensus 237 ~~~----l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~ 277 (765)
T PF10214_consen 237 TEY----LVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKS 277 (765)
T ss_pred cch----hccCCChhheeeEEecCCccceEEEEecCeEEEEEccC
Confidence 332 1122222677788888872 233344457777777766
|
These proteins are found in fungi. |
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.66 E-value=73 Score=37.62 Aligned_cols=59 Identities=14% Similarity=0.277 Sum_probs=37.9
Q ss_pred CCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEE
Q 001319 804 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIA 862 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la 862 (1101)
...+..++|+-....++.+..+.+.+|-..+..-.......-..+.-+.|+|.....|.
T Consensus 295 dEk~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~ip~~s~vkwhpe~~nTl~ 353 (1243)
T COG5290 295 DEKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQIPGISYVKWHPEEKNTLL 353 (1243)
T ss_pred hhhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeecCCCcceeeeccccCcEEE
Confidence 34455667776666777777889999987765433333333456788999994444443
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=85.53 E-value=50 Score=38.88 Aligned_cols=133 Identities=11% Similarity=0.148 Sum_probs=70.2
Q ss_pred EEEecCCCCEEEEEeCC----CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCc
Q 001319 851 LAFHPQDNNIIAIGTED----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWE 921 (1101)
Q Consensus 851 l~~s~~~~~~la~g~~d----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----v~lwd~~~~~ 921 (1101)
++|-. |..+.+++... ..+++|... |++-..-....+-=..++|-|.|..++|-+.||. |.++.-..-+
T Consensus 207 i~wrg-D~~y~~v~r~Ee~prra~rvysre-g~lds~sep~~g~e~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLr 284 (1243)
T COG5290 207 IFWRG-DTEYNLVGRSEERPRRAFRVYSRE-GQLDSASEPVTGMEHQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLR 284 (1243)
T ss_pred EEEcc-Ccceeeecchhcccccceeeeccc-cccccccCCcccchhccccccCCceeeeeccCCCCCcceEEEEccCCcc
Confidence 44444 55555555422 345666532 2211111111222234899999999999886653 5565544311
Q ss_pred cccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCC
Q 001319 922 KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNS 992 (1101)
Q Consensus 922 ~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg 992 (1101)
. ..+.... +.. ......+|.-....++++..+.+.+|...+.......... -..+.-+.|.|..
T Consensus 285 H-Gef~lr~--~~d-Ek~~~~~wn~~s~vlav~~~n~~~lwttkNyhWYLK~e~~---ip~~s~vkwhpe~ 348 (1243)
T COG5290 285 H-GEFDLRV--GCD-EKAFLENWNLLSTVLAVAEGNLLKLWTTKNYHWYLKVERQ---IPGISYVKWHPEE 348 (1243)
T ss_pred c-CCccccC--Cch-hhhhhhhhhHHHHHHHHhhcceEEEEEccceEEEEEEeec---CCCcceeeecccc
Confidence 0 0011111 111 3455667776666677777889999998876554333322 3345566666643
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=84.60 E-value=68 Score=35.25 Aligned_cols=197 Identities=11% Similarity=0.171 Sum_probs=103.5
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEec---CCCCE--EEEEe-CC---CcEEEEEeec--ceEEEe
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP---QDNNI--IAIGT-ED---STIHIYNVRV--DEVKSK 883 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~---~~~~~--la~g~-~d---g~v~iwd~~~--~~~~~~ 883 (1101)
..+++... .+-+.+||++ |+.+..+. .+....+..-. -+++. ||+++ .+ .+|++|.+.. +.+ ..
T Consensus 68 kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L-~~ 143 (381)
T PF02333_consen 68 KSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL-TD 143 (381)
T ss_dssp G-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-EE
T ss_pred cceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-eE
Confidence 33444444 6789999996 55555554 23444333321 02322 34444 32 4799998873 433 33
Q ss_pred ecc-------CCCCeeEEEEc--C-CCC-EEEEEeCCCcEEEEECCCC-c-cccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 884 LKG-------HQKRITGLAFS--T-SLN-ILVSSGADAQLCVWSIDTW-E-KRKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 884 ~~~-------h~~~V~~l~~s--~-d~~-~l~s~s~Dg~v~lwd~~~~-~-~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
+.. -...++.+|+- + +|. +++..+.+|.+..|.+... . .+....++.+... ..+..+........
T Consensus 144 v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~--sQ~EGCVVDDe~g~ 221 (381)
T PF02333_consen 144 VTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVG--SQPEGCVVDDETGR 221 (381)
T ss_dssp -CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-S--S-EEEEEEETTTTE
T ss_pred cCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCC--CcceEEEEecccCC
Confidence 221 12347778874 3 344 6667788999988887532 1 1122222222221 56788889988888
Q ss_pred EEEEe-CCeEEEEEcC--C---ceeeeEeccCCCCCCCEEEEEEc--cCCC-EEEEEe-CCCcEEEEeCCC-CceeEeeC
Q 001319 951 MLVVH-ETQLAIYDAS--K---MERIRQWTPQDALSAPISCAVYS--CNSQ-LVFATF-CDGNIGVFDADT-LRLRCYIA 1019 (1101)
Q Consensus 951 l~~~~-d~~i~v~d~~--~---~~~~~~~~~~~~h~~~v~~v~~s--~dg~-~l~s~~-~dg~i~vwd~~~-~~~~~~~~ 1019 (1101)
|.++. +..|.-|+.+ . +..+..... ......|-.|++- .+|+ ||++++ .+++..||+... ...+..+.
T Consensus 222 LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g-~~l~aDvEGlaly~~~~g~gYLivSsQG~~sf~Vy~r~~~~~~~g~f~ 300 (381)
T PF02333_consen 222 LYVGEEDVGIWRYDAEPEGGNDRTLVASADG-DGLVADVEGLALYYGSDGKGYLIVSSQGDNSFAVYDREGPNAYVGSFR 300 (381)
T ss_dssp EEEEETTTEEEEEESSCCC-S--EEEEEBSS-SSB-S-EEEEEEEE-CCC-EEEEEEEGGGTEEEEEESSTT--EEEEEE
T ss_pred EEEecCccEEEEEecCCCCCCcceeeecccc-cccccCccceEEEecCCCCeEEEEEcCCCCeEEEEecCCCCcccceEE
Confidence 88887 6677777765 1 222222222 2225667777764 3443 555544 677899999886 34444443
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=84.50 E-value=20 Score=45.34 Aligned_cols=72 Identities=15% Similarity=0.246 Sum_probs=45.1
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
+...+.+..+......+.... .+.+.+|+.........+...... ...++..++++..||.+.+||...
T Consensus 197 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~v~~h~Dgs~~fWd~s~ 265 (993)
T KOG1983|consen 197 IEYESLQVLYYSPTKILIGFN-----RGLVVIKDRASKYVQSAYLPNGQL------ESRDGSHFVSYHTDGSYAFWDVSS 265 (993)
T ss_pred cccccceeeeecCCCcceeee-----eeeeeehhcccccchhhccccccc------CccCCceEEEEEecCCEEeeecCC
Confidence 334455555544444444432 456666765554444444433221 177899999999999999999998
Q ss_pred Cee
Q 001319 617 VNI 619 (1101)
Q Consensus 617 ~~~ 619 (1101)
++.
T Consensus 266 g~~ 268 (993)
T KOG1983|consen 266 GKL 268 (993)
T ss_pred Cce
Confidence 765
|
|
| >PLN02193 nitrile-specifier protein | Back alignment and domain information |
|---|
Probab=84.49 E-value=86 Score=36.32 Aligned_cols=221 Identities=10% Similarity=0.019 Sum_probs=0.0
Q ss_pred CCCEEEEEeCC-------CcEEEEEeecceEEEe----eccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCC
Q 001319 857 DNNIIAIGTED-------STIHIYNVRVDEVKSK----LKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTW 920 (1101)
Q Consensus 857 ~~~~la~g~~d-------g~v~iwd~~~~~~~~~----~~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~lwd~~~~ 920 (1101)
++.+++.|+.+ ..+..||+.+.+=... -..........+..-++++.+.|+.+ ..+..+|+.+.
T Consensus 175 ~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~~~ndv~~yD~~t~ 254 (470)
T PLN02193 175 GNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDASRQYNGFYSFDTTTN 254 (470)
T ss_pred CCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCCCCCCccEEEEECCCC
Q ss_pred ccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCE
Q 001319 921 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL 994 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~ 994 (1101)
+ ...+............+.+..-++++.+.|. ...+..||+.+.+-...-.............+..-+++.
T Consensus 255 ~---W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gki 331 (470)
T PLN02193 255 E---WKLLTPVEEGPTPRSFHSMAADEENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKV 331 (470)
T ss_pred E---EEEcCcCCCCCCCccceEEEEECCEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcE
Q ss_pred EEEEeCC----CcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCC-------------
Q 001319 995 VFATFCD----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG------------- 1057 (1101)
Q Consensus 995 l~s~~~d----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg------------- 1057 (1101)
.+.++.+ ..+.+||+.+.+. ..+......+.....|..... ++.+++.|+.+.
T Consensus 332 yviGG~~g~~~~dv~~yD~~t~~W-~~~~~~g~~P~~R~~~~~~~~---------~~~iyv~GG~~~~~~~~~~~~~~~~ 401 (470)
T PLN02193 332 WVVYGFNGCEVDDVHYYDPVQDKW-TQVETFGVRPSERSVFASAAV---------GKHIVIFGGEIAMDPLAHVGPGQLT 401 (470)
T ss_pred EEEECCCCCccCceEEEECCCCEE-EEeccCCCCCCCcceeEEEEE---------CCEEEEECCccCCccccccCcccee
Q ss_pred -eEEEEeCCCCC-CccccCCCCCCCCCCccccCCC
Q 001319 1058 -SVKVMEPSESE-GKWGVSPPVDNGILNSRTTSSS 1090 (1101)
Q Consensus 1058 -~v~iWd~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 1090 (1101)
.+.++|+.+.+ ..+......+..+.+|+-.+.+
T Consensus 402 ndv~~~D~~t~~W~~~~~~~~~~~~P~~R~~~~~~ 436 (470)
T PLN02193 402 DGTFALDTETLQWERLDKFGEEEETPSSRGWTAST 436 (470)
T ss_pred ccEEEEEcCcCEEEEcccCCCCCCCCCCCccccce
|
|
| >KOG2377 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=84.37 E-value=70 Score=35.17 Aligned_cols=152 Identities=11% Similarity=0.154 Sum_probs=90.3
Q ss_pred eEEEecCCCCeEEEEcCCeEEEEECCCc--e-EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE--
Q 001319 808 PCIALSKNDSYVMSATGGKISLFNMMTF--K-VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-- 882 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~dg~i~vwd~~~~--~-~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~-- 882 (1101)
+.+-|...++.+.+...|.+.-|..... . ++..-....++|.++.||+ |.+.||+--.+.+|.+++....+...
T Consensus 26 ngvFfDDaNkqlfavrSggatgvvvkgpndDVpiSfdm~d~G~I~SIkFSl-DnkilAVQR~~~~v~f~nf~~d~~~l~~ 104 (657)
T KOG2377|consen 26 NGVFFDDANKQLFAVRSGGATGVVVKGPNDDVPISFDMDDKGEIKSIKFSL-DNKILAVQRTSKTVDFCNFIPDNSQLEY 104 (657)
T ss_pred cceeeccCcceEEEEecCCeeEEEEeCCCCCCCceeeecCCCceeEEEecc-CcceEEEEecCceEEEEecCCCchhhHH
Confidence 3455555455554444444444544321 1 1222223456899999999 99999999999999999985443322
Q ss_pred --eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe---CC
Q 001319 883 --KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ET 957 (1101)
Q Consensus 883 --~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~ 957 (1101)
+.+..+..|....|+.. .-+|.....| +.+|.+...+. .++....+. ..+.-..|.++...++.+. .+
T Consensus 105 ~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekr----slRlVks~~-~nvnWy~yc~et~v~LL~t~~~~n 177 (657)
T KOG2377|consen 105 TQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKR----SLRLVKSHN-LNVNWYMYCPETAVILLSTTVLEN 177 (657)
T ss_pred HHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhh----hhhhhhhcc-cCccEEEEccccceEeeecccccc
Confidence 22334456889999866 5666666555 77887765321 111122222 5677888888887765532 34
Q ss_pred eEEEEEcCCc
Q 001319 958 QLAIYDASKM 967 (1101)
Q Consensus 958 ~i~v~d~~~~ 967 (1101)
.+.=+.+.++
T Consensus 178 ~lnpf~~~~~ 187 (657)
T KOG2377|consen 178 VLNPFHFRAG 187 (657)
T ss_pred ccccEEEeec
Confidence 4444444433
|
|
| >PLN02153 epithiospecifier protein | Back alignment and domain information |
|---|
Probab=84.36 E-value=70 Score=35.20 Aligned_cols=193 Identities=13% Similarity=0.075 Sum_probs=90.1
Q ss_pred CCCeEEEEc-C-------CeEEEEECCCceEEEEee--C-CCC---CeeEEEEecCCCCEEEEEeCC-----CcEEEEEe
Q 001319 815 NDSYVMSAT-G-------GKISLFNMMTFKVMTTFM--S-PPP---ASTFLAFHPQDNNIIAIGTED-----STIHIYNV 875 (1101)
Q Consensus 815 dg~~la~~~-d-------g~i~vwd~~~~~~~~~~~--~-~~~---~i~~l~~s~~~~~~la~g~~d-----g~v~iwd~ 875 (1101)
++++++.|+ + ..+.+||+.+.+-..... . ... ....+++ ++++++.|+.+ ..+.+||.
T Consensus 32 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~---~~~iyv~GG~~~~~~~~~v~~yd~ 108 (341)
T PLN02153 32 GDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAV---GTKLYIFGGRDEKREFSDFYSYDT 108 (341)
T ss_pred CCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEE---CCEEEEECCCCCCCccCcEEEEEC
Confidence 455666554 2 247888887653322111 1 111 1122233 56788888754 35778888
Q ss_pred ecceE--EEeecc---CCCCeeEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCccccceEEeecCCCCCCCc
Q 001319 876 RVDEV--KSKLKG---HQKRITGLAFSTSLNILVSSGAD-----------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 939 (1101)
Q Consensus 876 ~~~~~--~~~~~~---h~~~V~~l~~s~d~~~l~s~s~D-----------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 939 (1101)
.+.+= +..+.. ...+....+..-+++..+.|+.+ ..|.+||..+.+-....... .......-
T Consensus 109 ~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~--~~~~~r~~ 186 (341)
T PLN02153 109 VKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG--ENFEKRGG 186 (341)
T ss_pred CCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC--CCCCCCCc
Confidence 76532 222210 11112222233456777777754 24778888775432211100 00000111
Q ss_pred ceEEEcCCCCEEEEEe--------------CCeEEEEEcCCceeeeEeccC--CCCCCCEEEEEEccCCCEEEEEeCC--
Q 001319 940 TRVQFNADQVRMLVVH--------------ETQLAIYDASKMERIRQWTPQ--DALSAPISCAVYSCNSQLVFATFCD-- 1001 (1101)
Q Consensus 940 ~~~~~s~d~~~l~~~~--------------d~~i~v~d~~~~~~~~~~~~~--~~h~~~v~~v~~s~dg~~l~s~~~d-- 1001 (1101)
..++ .-+++..+++. ...+.+||..+.+-...-... ........++ .-++++++.|+..
T Consensus 187 ~~~~-~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~--~~~~~iyv~GG~~~~ 263 (341)
T PLN02153 187 AGFA-VVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHA--VVGKYIIIFGGEVWP 263 (341)
T ss_pred ceEE-EECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeE--EECCEEEEECcccCC
Confidence 1222 23455555432 145888998876543321110 0001112222 2357777777742
Q ss_pred ------------CcEEEEeCCCCcee
Q 001319 1002 ------------GNIGVFDADTLRLR 1015 (1101)
Q Consensus 1002 ------------g~i~vwd~~~~~~~ 1015 (1101)
..+..+|..+..-.
T Consensus 264 ~~~~~~~~~~~~n~v~~~d~~~~~W~ 289 (341)
T PLN02153 264 DLKGHLGPGTLSNEGYALDTETLVWE 289 (341)
T ss_pred ccccccccccccccEEEEEcCccEEE
Confidence 25788888776543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=84.05 E-value=17 Score=40.21 Aligned_cols=151 Identities=13% Similarity=0.092 Sum_probs=89.5
Q ss_pred EEEecCCCCEEE-EEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCC--------CEEEEEeCCCcEEEEECCC-C
Q 001319 851 LAFHPQDNNIIA-IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL--------NILVSSGADAQLCVWSIDT-W 920 (1101)
Q Consensus 851 l~~s~~~~~~la-~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~--------~~l~s~s~Dg~v~lwd~~~-~ 920 (1101)
+..+.++..+|. .|.....++-.|+..|+.+..+.-|... -+.|.|+. +.|+ |-.+..|.--|..- |
T Consensus 472 ~mlh~~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlv-GlS~~svFrIDPR~~g 548 (776)
T COG5167 472 IMLHDNDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLV-GLSDYSVFRIDPRARG 548 (776)
T ss_pred ceeecCCcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEE-eecccceEEecccccC
Confidence 333333555554 4555567888899999999999888665 47787753 3444 44444444444332 2
Q ss_pred ccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe
Q 001319 921 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
..+.........+. ....+..-... .++++ +..|.|++||--.......++.. ...|..+..+.+|++|++.+
T Consensus 549 NKi~v~esKdY~tK--n~Fss~~tTes-GyIa~as~kGDirLyDRig~rAKtalP~l---G~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 549 NKIKVVESKDYKTK--NKFSSGMTTES-GYIAAASRKGDIRLYDRIGKRAKTALPGL---GDAIKHIDVTANGKHILATC 622 (776)
T ss_pred Cceeeeeehhcccc--ccccccccccC-ceEEEecCCCceeeehhhcchhhhcCccc---ccceeeeEeecCCcEEEEee
Confidence 11111111111111 22223333333 45555 56899999997655554455544 78899999999999988776
Q ss_pred CCCcEEEEeCCC
Q 001319 1000 CDGNIGVFDADT 1011 (1101)
Q Consensus 1000 ~dg~i~vwd~~~ 1011 (1101)
..++.+-|+.-
T Consensus 623 -k~yllL~d~~i 633 (776)
T COG5167 623 -KNYLLLTDVPI 633 (776)
T ss_pred -cceEEEEeccc
Confidence 45677777653
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=83.97 E-value=4.5 Score=40.91 Aligned_cols=69 Identities=7% Similarity=0.074 Sum_probs=49.1
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCcccccce----eee-------cccCcEEEEEEecCCCceEEEEecCCceEEEEEc
Q 001319 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS----QID-------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1101)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~----~l~-------~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~ 482 (1101)
+..++.+|++.+.+|.+++||+.+++.+.... .+. .....|..+.++.+|. -+++-+ +|..+.|+.
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~--PiV~ls-ng~~y~y~~ 94 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGV--PIVTLS-NGDSYSYSP 94 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCC--EEEEEe-CCCEEEecc
Confidence 44579999999999999999999987654321 122 3556788888888887 455544 567788884
Q ss_pred CCc
Q 001319 483 SGR 485 (1101)
Q Consensus 483 ~~~ 485 (1101)
+-.
T Consensus 95 ~L~ 97 (219)
T PF07569_consen 95 DLG 97 (219)
T ss_pred ccc
Confidence 433
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins | Back alignment and domain information |
|---|
Probab=83.47 E-value=26 Score=40.01 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=25.2
Q ss_pred CCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 981 APISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 981 ~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
..|.+++..+..+.|++.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999988889999999999999999985
|
RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A. |
| >TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein | Back alignment and domain information |
|---|
Probab=82.67 E-value=78 Score=34.48 Aligned_cols=71 Identities=10% Similarity=-0.043 Sum_probs=34.4
Q ss_pred CccEEEEeccC-----CeEEEEecCCCCeeeeccCCC-CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 507 NIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 507 ~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
++.+.+.|+.. ..+..||+.+.+=...-..+. ......+..-+++..+.|+.+......+..||+.+.+-.
T Consensus 123 ~~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~ 199 (323)
T TIGR03548 123 DGTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQ 199 (323)
T ss_pred CCEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCeeE
Confidence 34566666642 356777766543221111111 112223334466666776643221234678898876643
|
Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1101 | ||||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 4e-10 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-06 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 5e-10 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-06 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 6e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-10 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 4e-06 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 9e-10 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 5e-06 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 1e-09 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 7e-06 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 6e-06 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 1e-09 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 7e-06 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 1e-09 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 6e-06 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 1e-09 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 6e-06 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 1e-09 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 6e-06 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 1e-09 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 6e-06 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 1e-09 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 5e-06 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-09 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 1e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 2e-09 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 1e-05 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-09 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 2e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 2e-09 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 8e-06 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 3e-09 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 7e-06 | ||
| 3shf_A | 1256 | Crystal Structure Of The R265s Mutant Of Full-Lengt | 1e-08 | ||
| 3sfz_A | 1249 | Crystal Structure Of Full-Length Murine Apaf-1 Leng | 2e-08 | ||
| 3iza_B | 1263 | Structure Of An Apoptosome-Procaspase-9 Card Comple | 2e-07 | ||
| 3c99_A | 432 | Structural Basis Of Histone H4 Recognition By P55 L | 1e-06 | ||
| 2xyi_A | 430 | Crystal Structure Of Nurf55 In Complex With A H4 Pe | 1e-06 | ||
| 2yba_A | 422 | Crystal Structure Of Nurf55 In Complex With Histone | 1e-06 | ||
| 3zey_7 | 318 | High-resolution Cryo-electron Microscopy Structure | 2e-06 | ||
| 3cfv_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 1e-05 | ||
| 3cfs_B | 414 | Structural Basis Of The Interaction Of Rbap46RBAP48 | 2e-05 | ||
| 3gfc_A | 425 | Crystal Structure Of Histone-Binding Protein Rbbp4 | 2e-05 | ||
| 2aq5_A | 402 | Crystal Structure Of Murine Coronin-1 Length = 402 | 3e-05 | ||
| 2b4e_A | 402 | Crystal Structure Of Murine Coronin-1: Monoclinic F | 4e-05 | ||
| 1vyh_C | 410 | Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | 1e-04 | ||
| 3mks_B | 464 | Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH | 1e-04 | ||
| 3jpx_A | 402 | Eed: A Novel Histone Trimethyllysine Binder Within | 3e-04 | ||
| 3iiy_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 3e-04 | ||
| 3iiw_A | 365 | Crystal Structure Of Eed In Complex With A Trimethy | 3e-04 | ||
| 2qxv_A | 361 | Structural Basis Of Ezh2 Recognition By Eed Length | 3e-04 | ||
| 3jzn_A | 366 | Structure Of Eed In Apo Form Length = 366 | 3e-04 | ||
| 3izb_a | 319 | Localization Of The Small Subunit Ribosomal Protein | 4e-04 | ||
| 3rfg_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3rfh_A | 319 | Crystal Structure Of The Yeast Rack1 Dimer In Space | 5e-04 | ||
| 3jyv_R | 313 | Structure Of The 40s Rrna And Proteins And PE TRNA | 5e-04 | ||
| 1trj_A | 314 | Homology Model Of Yeast Rack1 Protein Fitted Into 1 | 5e-04 | ||
| 1nex_B | 464 | Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Comp | 5e-04 | ||
| 3frx_A | 319 | Crystal Structure Of The Yeast Orthologue Of Rack1, | 6e-04 | ||
| 3jro_A | 753 | Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice | 8e-04 | ||
| 3jrp_A | 379 | Sec13 With Nup145c (Aa109-179) Insertion Blade Leng | 9e-04 |
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256 | Back alignment and structure |
|
| >pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249 | Back alignment and structure |
|
| >pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55 Length = 432 | Back alignment and structure |
|
| >pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide Length = 430 | Back alignment and structure |
|
| >pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3 Length = 422 | Back alignment and structure |
|
| >pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318 | Back alignment and structure |
|
| >pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH Histone H4 Length = 414 | Back alignment and structure |
|
| >pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4 Length = 425 | Back alignment and structure |
|
| >pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1 Length = 402 | Back alignment and structure |
|
| >pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form Length = 402 | Back alignment and structure |
|
| >pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410 | Back alignment and structure |
|
| >pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464 | Back alignment and structure |
|
| >pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The Eed-Ezh2 Polycomb Complex Length = 402 | Back alignment and structure |
|
| >pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H1k26 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated Histone H3k27 Peptide Length = 365 | Back alignment and structure |
|
| >pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed Length = 361 | Back alignment and structure |
|
| >pdb|3JZN|A Chain A, Structure Of Eed In Apo Form Length = 366 | Back alignment and structure |
|
| >pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319 | Back alignment and structure |
|
| >pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319 | Back alignment and structure |
|
| >pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319 | Back alignment and structure |
|
| >pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313 | Back alignment and structure |
|
| >pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314 | Back alignment and structure |
|
| >pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex Length = 464 | Back alignment and structure |
|
| >pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319 | Back alignment and structure |
|
| >pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice Length = 753 | Back alignment and structure |
|
| >pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade Length = 379 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1101 | |||
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 100.0 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 100.0 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 100.0 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 100.0 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 100.0 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 100.0 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 100.0 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 100.0 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 100.0 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 100.0 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 100.0 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 100.0 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 100.0 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 100.0 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 100.0 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 100.0 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 100.0 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 100.0 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 100.0 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 100.0 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 100.0 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 100.0 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.98 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.98 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.97 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.97 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.97 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.97 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.96 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.96 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.96 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.96 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.96 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.95 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.93 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.92 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.91 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.91 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.91 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.91 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.9 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.9 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.89 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.89 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.88 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.88 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.87 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.87 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.86 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.86 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.85 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.84 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.83 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.83 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.83 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.82 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.82 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.82 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.82 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.81 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.81 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.79 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.78 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.77 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.76 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.74 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.73 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.71 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.71 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.69 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.69 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.68 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.68 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.67 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.67 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 99.67 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.62 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.62 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.62 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.6 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.6 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.6 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.59 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.59 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.58 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.58 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.58 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.58 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.57 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.57 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.56 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.55 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.55 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 99.55 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.55 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.54 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.52 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.5 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.5 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.48 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.47 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.45 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.43 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.42 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.4 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.38 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.36 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.33 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.33 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.33 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.29 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.29 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.28 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.27 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.26 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.26 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 99.25 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 99.24 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.24 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.21 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 99.21 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.21 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.2 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.2 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.19 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.18 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.17 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 99.16 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 99.15 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 99.15 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.14 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.11 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 99.09 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.08 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 99.08 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 99.08 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 99.03 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 99.03 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 99.0 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.97 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.96 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.91 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.9 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.83 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.82 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.8 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.79 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 98.79 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.77 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.77 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.74 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.7 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.68 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.68 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.65 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.64 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.62 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.59 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.56 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 98.54 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.54 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.53 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.51 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.51 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.48 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.47 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.46 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.44 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.44 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.4 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.36 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.35 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.33 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.32 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.32 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.31 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 98.23 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.22 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.19 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.17 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 98.17 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.17 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 98.17 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 98.15 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.11 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.09 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.06 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 98.02 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.0 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.96 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.93 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.91 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.9 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.81 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.7 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.7 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.64 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.6 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.6 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.55 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.54 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 97.52 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.49 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 97.48 | |
| 2xtc_A | 90 | F-box-like/WD repeat-containing protein TBL1X; tra | 97.41 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 97.39 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 97.27 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 97.16 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 97.16 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 97.15 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.11 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 97.03 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.98 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.95 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.93 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.82 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 96.78 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 96.77 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 96.75 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.74 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 96.68 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.58 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.5 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 96.28 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.27 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 96.2 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 96.03 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 95.86 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.84 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 95.81 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 95.8 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.78 | |
| 1uuj_A | 88 | Platelet-activating factor acetylhydrolase IB ALP | 95.57 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 95.53 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 95.42 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 95.39 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 95.13 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 94.9 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 94.78 | |
| 2nxp_A | 156 | Transcription initiation factor TFIID subunit 5; t | 94.71 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.54 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 94.38 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.36 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 94.35 | |
| 2j4b_A | 138 | TAF5, transcription initiation factor TFIID subuni | 94.07 | |
| 2j49_A | 148 | Transcription initiation factor TFIID subunit 5; n | 94.05 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 92.53 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 92.17 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 91.92 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 91.49 | |
| 2wg3_C | 463 | Hedgehog-interacting protein; lipoprotein, develop | 88.33 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 88.16 | |
| 4hvt_A | 711 | Ritya.17583.B, post-proline cleaving enzyme; ssgci | 87.39 | |
| 3kci_A | 389 | Probable E3 ubiquitin-protein ligase HERC2; WD40, | 85.8 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 85.28 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 83.67 | |
| 3q6k_A | 381 | 43.2 kDa salivary protein; beta propeller, binding | 81.11 | |
| 3b7f_A | 394 | Glycosyl hydrolase, BNR repeat; 7-bladed beta-prop | 80.26 |
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-68 Score=641.58 Aligned_cols=565 Identities=21% Similarity=0.341 Sum_probs=485.7
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
++.+|++.|+|++|||||++ ||+|+.|+.|+|||. +++.+. .+.+|.+.|++++|||||
T Consensus 11 ~L~GH~~~V~~~a~spdg~~-las~~~d~~v~iWd~-~~~~~~-------------------~l~gh~~~V~~l~fspdg 69 (577)
T 2ymu_A 11 RLEAHSSSVRGVAFSPDGQT-IASASDDKTVKLWNR-NGQLLQ-------------------TLTGHSSSVWGVAFSPDG 69 (577)
T ss_dssp EECCCSSCEEEEEECTTSSC-EEEEETTSEEEEECT-TSCEEE-------------------EEECCSSCEEEEEECTTS
T ss_pred EECCCCCcEEEEEECCCCCE-EEEEeCCCEEEEEEC-CCCEEE-------------------EEeCCCCCEEEEEECCCC
Confidence 45579999999999999995 689999999999995 555543 388999999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeE
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~ 498 (1101)
++||+++.|++|+|||+. ++.+. .+.+|.+.|.+++|+||++ +|++++.|+.+++|+..+.......+|...|.
T Consensus 70 ~~las~~~d~~i~vWd~~-~~~~~---~~~~~~~~v~~~~~s~d~~--~l~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~ 143 (577)
T 2ymu_A 70 QTIASASDDKTVKLWNRN-GQLLQ---TLTGHSSSVRGVAFSPDGQ--TIASASDDKTVKLWNRNGQLLQTLTGHSSSVW 143 (577)
T ss_dssp SEEEEEETTSCEEEEETT-SCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTCCEEEEECCCSSCEE
T ss_pred CEEEEEeCCCEEEEEECC-CCEEE---EEECCCCCEEEEEECCCCC--EEEEEcCCCceeecccccceeeeccCCCCcee
Confidence 999999999999999964 45444 6889999999999999999 89999999999999977788888899999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.+.+++ ++..+++++.++.+++|+.. .........+...+.++.++|+++++++++. ++.|++||. +++.+.
T Consensus 144 ~~~~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----d~~v~~w~~-~~~~~~ 215 (577)
T 2ymu_A 144 GVAFSP--DGQTIASASDDKTVKLWNRN-GQLLQTLTGHSSSVWGVAFSPDGQTIASASD----DKTVKLWNR-NGQLLQ 215 (577)
T ss_dssp EEEECT--TSSCEEEEETTSEEEEECTT-SCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSEEEEECT-TSCEEE
T ss_pred eeeeec--CCccceecccccceeccccc-eeeeeeccCCCcceeeeeecCCCCEEEEEcC----CCEEEEEeC-CCcEEE
Confidence 999977 55789999999999999854 3445556677888999999999999999986 899999995 577888
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.+.+|.. .+.+++|+|++++|++++.|+.|++||. +++.+..+..+ ...|.+++|+|+++.+++++.|+.|++|+.
T Consensus 216 ~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~i~~w~~-~~~~~~~~~~~--~~~v~~v~~~~d~~~l~~~~~d~~i~~w~~ 291 (577)
T 2ymu_A 216 TLTGHSS-SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH--SSSVNGVAFRPDGQTIASASDDKTVKLWNR 291 (577)
T ss_dssp EEECCSS-CEEEEEECTTSSCEEEEETTSCEEEECT-TSCEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred EEecCCC-CEEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEEecC--CCCEEEEEEcCCCCEEEEEeCCCEEEEEeC
Confidence 8888877 8999999999999999999999999996 45666666655 448999999999999999999999999996
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
... ....+ .+|..
T Consensus 292 ~~~--~~~~~-----------------------------------------------------------------~~h~~ 304 (577)
T 2ymu_A 292 NGQ--LLQTL-----------------------------------------------------------------TGHSS 304 (577)
T ss_dssp TSC--EEEEE-----------------------------------------------------------------CCCSS
T ss_pred CCc--EEEEE-----------------------------------------------------------------ecCCC
Confidence 432 11111 23778
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCe
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 818 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 818 (1101)
.|.+++|+|++..+++++.||.+++|+..... +.. +. +|...+.+++|+|+|++
T Consensus 305 ~v~~~~~~~~~~~l~t~~~d~~i~~w~~~~~~----------------------~~~--~~--~~~~~v~~~~~s~~g~~ 358 (577)
T 2ymu_A 305 SVWGVAFSPDGQTIASASDDKTVKLWNRNGQH----------------------LQT--LT--GHSSSVWGVAFSPDGQT 358 (577)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTSCE----------------------EEE--EC--CCSSCEEEEEECTTSSE
T ss_pred CeEEEEECCCCCEEEEEeCCCeEEEEeCCCCe----------------------eEE--Ee--CCCCCEEEEEECCCCCE
Confidence 89999999999999999999999999854211 101 11 37889999999999999
Q ss_pred EEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 819 VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 819 la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
+++++ +|.|++||. +++.+..+.+|...|++++|+| ++++|++++.|+.|++||. +++.+..+.+|...|++++|+
T Consensus 359 l~~~~~dg~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s 435 (577)
T 2ymu_A 359 IASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSP-DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFS 435 (577)
T ss_dssp EEEEETTSEEEEEET-TCCEEEEEECCSSCEEEEEECT-TSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEEC
T ss_pred EEEEeCCCEEEEEcC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEEC
Confidence 99998 899999995 6788889999999999999999 9999999999999999995 677888999999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeeeEeccC
Q 001319 898 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQ 976 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~ 976 (1101)
||+++|++++.|++|++||... +. +....++. ..+.+++|+||+++|+++ .|+.|++||. +++.+..+..|
T Consensus 436 ~d~~~l~~~~~d~~v~~w~~~~-~~-----~~~~~~~~-~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h 507 (577)
T 2ymu_A 436 PDDQTIASASDDKTVKLWNRNG-QL-----LQTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGH 507 (577)
T ss_dssp TTSSEEEEEETTSEEEEEETTS-CE-----EEEEECCS-SCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECC
T ss_pred CCCCEEEEEcCCCEEEEEECCC-CE-----EEEEcCCC-CCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCC
Confidence 9999999999999999999754 22 22233444 789999999999999995 4899999995 57778887765
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001319 977 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 977 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
...|++++|+|||++|++++.||.|++||. +++++..+.+ |.. .+.+++|+| |+++|+|++.|
T Consensus 508 ---~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~----------h~~--~v~~~~fs~-dg~~l~s~~~D 570 (577)
T 2ymu_A 508 ---SSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG----------HSS--SVWGVAFSP-DGQTIASASSD 570 (577)
T ss_dssp ---SSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEEC----------CSS--CEEEEEECT-TSSCEEEEETT
T ss_pred ---CCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcC----------CCC--CEEEEEEcC-CCCEEEEEeCC
Confidence 899999999999999999999999999996 5777776653 555 457999999 79999999999
Q ss_pred CeEEEEe
Q 001319 1057 GSVKVME 1063 (1101)
Q Consensus 1057 g~v~iWd 1063 (1101)
|+|++||
T Consensus 571 ~~i~~Wd 577 (577)
T 2ymu_A 571 KTVKLWN 577 (577)
T ss_dssp SCEEEEC
T ss_pred CEEEEeC
Confidence 9999997
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-66 Score=620.15 Aligned_cols=576 Identities=13% Similarity=0.156 Sum_probs=459.9
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+.+.+.+++|||||++ +|+++ ++.|+||++.+++... ++.+|...|++++|||||++||
T Consensus 17 ~~g~~~~~~~spdg~~-l~~~~-~~~v~l~~~~~~~~~~-------------------~~~~h~~~v~~~~~spdg~~la 75 (611)
T 1nr0_A 17 ARGTAVVLGNTPAGDK-IQYCN-GTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 75 (611)
T ss_dssp CTTCCCCCEECTTSSE-EEEEE-TTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred ccCceeEEeeCCCCCE-EEeCC-CCEEEEecCCCcccCe-------------------EecCCCCceEEEEECCCCcEEE
Confidence 4678899999999995 57775 6799999998776543 4889999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC----ceEEEEEcCCceeEEeecCCcCeE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d----~~v~iwd~~~~~~~~~~~h~~~v~ 498 (1101)
+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+||++ .|++++.+ +.|++|| .++.+..+.+|...|.
T Consensus 76 sg~~d~~v~lWd~~~~~~~~-~~~~~~~~~~v~~v~fs~dg~--~l~~~~~~~~~~~~v~~wd-~~~~~~~l~gh~~~v~ 151 (611)
T 1nr0_A 76 SGDVHGNVRIWDTTQTTHIL-KTTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFD-TGTSNGNLTGQARAMN 151 (611)
T ss_dssp EEETTSEEEEEESSSTTCCE-EEEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETT-TCCBCBCCCCCSSCEE
T ss_pred EEeCCCCEEEeECCCCccee-eEeecccCCceEEEEECCCCC--EEEEEECCCCceeEEEEee-CCCCcceecCCCCCce
Confidence 99999999999998665432 225789999999999999999 67777654 4788888 5667788999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+++|+|+. ...|++++.|++|++||..+.+....+..|...|.+++|+|+|++|++++. |+.|++||..+++.+.
T Consensus 152 ~v~f~p~~-~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~----D~~i~lwd~~~g~~~~ 226 (611)
T 1nr0_A 152 SVDFKPSR-PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTG 226 (611)
T ss_dssp EEEECSSS-SCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred EEEECCCC-CeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEEC----CCcEEEEECCCCcEee
Confidence 99998843 136999999999999999888888889999999999999999999999986 8999999999999988
Q ss_pred Eec-------ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC-CCCCeeEEecCCCEEEEEEcC
Q 001319 579 TYA-------GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL-PNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 579 ~~~-------~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+. +|.. .+.+++|+|++++|++++.|++|++||+.+++.+..+...... ..+..+.| ++..+++++.|
T Consensus 227 ~~~~~~~~~~~h~~-~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d 303 (611)
T 1nr0_A 227 VFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISAN 303 (611)
T ss_dssp ECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETT
T ss_pred eeccccccccccCC-CEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCC
Confidence 884 5665 8999999999999999999999999999999988887643211 12334444 78899999999
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
+.+++|+...+. ....+
T Consensus 304 ~~i~~~~~~~~~-~~~~~-------------------------------------------------------------- 320 (611)
T 1nr0_A 304 GFINFVNPELGS-IDQVR-------------------------------------------------------------- 320 (611)
T ss_dssp CCEEEEETTTTE-EEEEE--------------------------------------------------------------
T ss_pred CcEEEEeCCCCC-cceEE--------------------------------------------------------------
Confidence 999999976541 11111
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
.+|...|.+++|+|+|+++++++.||.|++|++... ....... ..|...|.++
T Consensus 321 ---~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~----------------------~~~~~~~--~~h~~~v~~~ 373 (611)
T 1nr0_A 321 ---YGHNKAITALSSSADGKTLFSADAEGHINSWDISTG----------------------ISNRVFP--DVHATMITGI 373 (611)
T ss_dssp ---CCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTC----------------------CEEECSS--CSCSSCEEEE
T ss_pred ---cCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCC----------------------ceeeecc--cCCcceEEEE
Confidence 348889999999999999999999999999987532 1111111 1388899999
Q ss_pred EecCCCCeEEEEcCCeEEEEECCCceEEEE---eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTT---FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 811 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~---~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
+|++++.++..+.|+.+++|+..++..... .........+++|+| ++.+++++ .++.+++|+ .++ +..+. |
T Consensus 374 ~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~~~-~~~~v~~~~--~~~-~~~~~-~ 447 (611)
T 1nr0_A 374 KTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSA-DGDIAVAA-CYKHIAIYS--HGK-LTEVP-I 447 (611)
T ss_dssp EECTTSCEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECT-TSSCEEEE-ESSEEEEEE--TTE-EEEEE-C
T ss_pred EECCCCcEEEEEcCCceEEeecCCccccccceeeeecCCCCcEEEEeC-CCcEEEEE-eCceEEEEe--CCc-eeeee-c
Confidence 999887655555599999999876543210 011234567899999 78777776 467899998 444 55554 8
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCC
Q 001319 888 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASK 966 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~ 966 (1101)
...+.+++|+|||++|++|+.|++|++||+.++.... ... .+|. ..+.+++|+|||++|++++ |+.|++|++.+
T Consensus 448 ~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~~~~---~~~-~~h~-~~v~~v~fspdg~~las~s~d~~v~~w~~~~ 522 (611)
T 1nr0_A 448 SYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSE---VKT-IVHP-AEITSVAFSNNGAFLVATDQSRKVIPYSVAN 522 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEE---EEE-EECS-SCEEEEEECTTSSEEEEEETTSCEEEEEGGG
T ss_pred CCCceEEEEeCCCCEEEEeCCCCeEEEEEccCCceee---eec-cCCC-CceEEEEECCCCCEEEEEcCCCCEEEEEcCC
Confidence 8899999999999999999999999999998754321 111 2333 7899999999999999965 99999999987
Q ss_pred -ceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE-eeCCCCcCCCcccCCCCccceEEEEEec
Q 001319 967 -MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-YIAPSTYLSPSVLNGSQTVYPLVVAAHP 1044 (1101)
Q Consensus 967 -~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~l~~~p 1044 (1101)
++.+... ....|...|.+++|||||++|++|+.|++|++||+.++.... ... .+|. ...+.+++|+|
T Consensus 523 ~~~~~~~~-~~~~H~~~V~~v~fspdg~~lasgs~D~~v~lW~~~~~~~~~~~~~---------~~h~-~~~v~~v~fs~ 591 (611)
T 1nr0_A 523 NFELAHTN-SWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK---------GAHA-MSSVNSVIWLN 591 (611)
T ss_dssp TTEESCCC-CCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEET---------TSST-TSCEEEEEEEE
T ss_pred CCceeeee-eeeecccceeEEEECCCCCEEEEEECCCcEEEEECCCcccccchhh---------ccCc-ccCeeEEEEcC
Confidence 5554321 112358999999999999999999999999999999875322 211 1141 34567999999
Q ss_pred CCCCEEEEEECCCeEEEEeCC
Q 001319 1045 LEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1045 ~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
++. |++++.||+|++|++.
T Consensus 592 -d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 592 -ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp -TTE-EEEEETTSCEEEEECC
T ss_pred -CCE-EEEecCCCCEEEEecc
Confidence 566 9999999999999973
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-63 Score=597.45 Aligned_cols=547 Identities=16% Similarity=0.219 Sum_probs=444.0
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+|++... .......+|.+.|++++|||||+ +||+|+.|++|+|||+.+++.... ..+.+|.
T Consensus 43 l~~~~~~-~~~~~~~~h~~~v~~~~~spdg~-~lasg~~d~~v~lWd~~~~~~~~~-----------------~~~~~~~ 103 (611)
T 1nr0_A 43 TVPVGSL-TDTEIYTEHSHQTTVAKTSPSGY-YCASGDVHGNVRIWDTTQTTHILK-----------------TTIPVFS 103 (611)
T ss_dssp EEETTCS-SCCEEECCCSSCEEEEEECTTSS-EEEEEETTSEEEEEESSSTTCCEE-----------------EEEECSS
T ss_pred EecCCCc-ccCeEecCCCCceEEEEECCCCc-EEEEEeCCCCEEEeECCCCcceee-----------------EeecccC
Confidence 6766532 22333346999999999999998 569999999999999976543221 2367899
Q ss_pred ccEEEEEEccCCCEEEEEECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-
Q 001319 407 ISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd- 481 (1101)
+.|.+++|+|||++||+++.+ +.|++|| +++... .+.+|.+.|++++|+|++.. .|++|+.|++|++||
T Consensus 104 ~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~---~l~gh~~~v~~v~f~p~~~~-~l~s~s~D~~v~lwd~ 177 (611)
T 1nr0_A 104 GPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNG---NLTGQARAMNSVDFKPSRPF-RIISGSDDNTVAIFEG 177 (611)
T ss_dssp SCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCB---CCCCCSSCEEEEEECSSSSC-EEEEEETTSCEEEEET
T ss_pred CceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcc---eecCCCCCceEEEECCCCCe-EEEEEeCCCeEEEEEC
Confidence 999999999999999999865 4678887 455444 67899999999999999874 599999999999999
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-------CCCCceEEEEEccCCCEEE
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-------APGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-------~~~~~v~~~~~s~d~~~l~ 554 (1101)
.+++++..+.+|...|.+++|+| +|++|++++.|++|++||+.+++....+. .|...|.+++|+|+|++|+
T Consensus 178 ~~~~~~~~l~~H~~~V~~v~fsp--dg~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~ 255 (611)
T 1nr0_A 178 PPFKFKSTFGEHTKFVHSVRYNP--DGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIA 255 (611)
T ss_dssp TTBEEEEEECCCSSCEEEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEE
T ss_pred CCCeEeeeeccccCceEEEEECC--CCCEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEE
Confidence 88888999999999999999987 67899999999999999999888777663 6888999999999999999
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCc--ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1101)
+++. |+.|++||+.+++.+..+..+... ....+.| +++.+++++.|+.+++|+...++....+..| ...|
T Consensus 256 s~s~----D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh--~~~v 327 (611)
T 1nr0_A 256 SASA----DKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGSIDQVRYGH--NKAI 327 (611)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTEEEEEECCC--SSCE
T ss_pred EEeC----CCeEEEEeCCCCceeeeecCCCCccceeEEEEE--cCCEEEEEeCCCcEEEEeCCCCCcceEEcCC--CCCE
Confidence 9986 899999999999999888754332 2333444 6889999999999999999998877777655 4489
Q ss_pred CeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCC
Q 001319 633 PRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 712 (1101)
.+++|+|+|++|++++.|++|++||+.++. ....+
T Consensus 328 ~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~-~~~~~-------------------------------------------- 362 (611)
T 1nr0_A 328 TALSSSADGKTLFSADAEGHINSWDISTGI-SNRVF-------------------------------------------- 362 (611)
T ss_dssp EEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECS--------------------------------------------
T ss_pred EEEEEeCCCCEEEEEeCCCcEEEEECCCCc-eeeec--------------------------------------------
Confidence 999999999999999999999999998762 11111
Q ss_pred ceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcc
Q 001319 713 PIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 792 (1101)
Q Consensus 713 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1101)
...|...|.+++|++++ .+++++.|+.+++|+..........
T Consensus 363 --------------------~~~h~~~v~~~~~s~~~-~l~s~s~d~~v~~w~~~~~~~~~~~----------------- 404 (611)
T 1nr0_A 363 --------------------PDVHATMITGIKTTSKG-DLFTVSWDDHLKVVPAGGSGVDSSK----------------- 404 (611)
T ss_dssp --------------------SCSCSSCEEEEEECTTS-CEEEEETTTEEEEECSSSSSSCTTS-----------------
T ss_pred --------------------ccCCcceEEEEEECCCC-cEEEEEcCCceEEeecCCccccccc-----------------
Confidence 02377889999999776 5889999999999987543211100
Q ss_pred ceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEE
Q 001319 793 LMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~i 872 (1101)
.... .......+++++|||+.++++.++.+++|+ .++ +..+. |...+.+++|+| ++++||+|+.|++|++
T Consensus 405 ~~~~-----~~~~~~~~~~~s~dg~~~~~~~~~~v~~~~--~~~-~~~~~-~~~~v~~va~sp-dg~~lasgs~D~~v~l 474 (611)
T 1nr0_A 405 AVAN-----KLSSQPLGLAVSADGDIAVAACYKHIAIYS--HGK-LTEVP-ISYNSSCVALSN-DKQFVAVGGQDSKVHV 474 (611)
T ss_dssp CCEE-----ECSSCEEEEEECTTSSCEEEEESSEEEEEE--TTE-EEEEE-CSSCEEEEEECT-TSCEEEEEETTSEEEE
T ss_pred eeee-----ecCCCCcEEEEeCCCcEEEEEeCceEEEEe--CCc-eeeee-cCCCceEEEEeC-CCCEEEEeCCCCeEEE
Confidence 0000 023456789999999988888889999999 344 44554 778899999999 9999999999999999
Q ss_pred EEeecceE--EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC-CccccceEEeecCCCCCCCcceEEEcCCCC
Q 001319 873 YNVRVDEV--KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT-WEKRKSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 873 wd~~~~~~--~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~-~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
||+.++.. +.. .+|...|++++|+|||++|++++.|++|++|++.+ ++..... ...+|. ..|.+++|+|||+
T Consensus 475 wd~~~~~~~~~~~-~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~~~~~~~---~~~~H~-~~V~~v~fspdg~ 549 (611)
T 1nr0_A 475 YKLSGASVSEVKT-IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTN---SWTFHT-AKVACVSWSPDNV 549 (611)
T ss_dssp EEEETTEEEEEEE-EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCCC---CCCCCS-SCEEEEEECTTSS
T ss_pred EEccCCceeeeec-cCCCCceEEEEECCCCCEEEEEcCCCCEEEEEcCCCCceeeee---eeeecc-cceeEEEECCCCC
Confidence 99988754 233 68999999999999999999999999999999987 4332210 112243 7899999999999
Q ss_pred EEEEEe-CCeEEEEEcCCcee-e-eEeccCCCC-CCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 950 RMLVVH-ETQLAIYDASKMER-I-RQWTPQDAL-SAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 950 ~l~~~~-d~~i~v~d~~~~~~-~-~~~~~~~~h-~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
+|++++ |+.|++|++.++.. + ..+ .+| ...|++++|+||++ |++++.|++|++|++.
T Consensus 550 ~lasgs~D~~v~lW~~~~~~~~~~~~~---~~h~~~~v~~v~fs~d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 550 RLATGSLDNSVIVWNMNKPSDHPIIIK---GAHAMSSVNSVIWLNETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp EEEEEETTSCEEEEETTCTTSCCEEET---TSSTTSCEEEEEEEETTE-EEEEETTSCEEEEECC
T ss_pred EEEEEECCCcEEEEECCCcccccchhh---ccCcccCeeEEEEcCCCE-EEEecCCCCEEEEecc
Confidence 999965 99999999988653 2 233 345 78999999999998 9999999999999974
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-62 Score=585.54 Aligned_cols=533 Identities=21% Similarity=0.359 Sum_probs=457.0
Q ss_pred ccccCCCCcceeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC
Q 001319 327 TWSLDDLPRTVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 405 (1101)
+|+. ..++.+++ +|.+.|++++|||||+ +||+|+.|++|+|||.. ++.+. .+.+|
T Consensus 42 iWd~---~~~~~~~l~gh~~~V~~l~fspdg~-~las~~~d~~i~vWd~~-~~~~~-------------------~~~~~ 97 (577)
T 2ymu_A 42 LWNR---NGQLLQTLTGHSSSVWGVAFSPDGQ-TIASASDDKTVKLWNRN-GQLLQ-------------------TLTGH 97 (577)
T ss_dssp EECT---TSCEEEEEECCSSCEEEEEECTTSS-EEEEEETTSCEEEEETT-SCEEE-------------------EECCC
T ss_pred EEEC---CCCEEEEEeCCCCCEEEEEECCCCC-EEEEEeCCCEEEEEECC-CCEEE-------------------EEECC
Confidence 6763 44555555 4999999999999998 56899999999999964 55443 37889
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
...|.+++|+|||++|++++.|+.+++|+...... ....+|...|.++.|+|++. .+++++.++.+++|+..+.
T Consensus 98 ~~~v~~~~~s~d~~~l~~~~~d~~~~~~~~~~~~~----~~~~~~~~~v~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 171 (577)
T 2ymu_A 98 SSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLL----QTLTGHSSSVWGVAFSPDGQ--TIASASDDKTVKLWNRNGQ 171 (577)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCCEE----EEECCCSSCEEEEEECTTSS--CEEEEETTSEEEEECTTSC
T ss_pred CCCEEEEEECCCCCEEEEEcCCCceeeccccccee----eeccCCCCceeeeeeecCCc--cceecccccceecccccee
Confidence 99999999999999999999999999999776432 24678999999999999999 7899999999999998888
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
.......|...|.++++++ ++.++++++.|+.|++||. +.+....+..+...|.+++|+|+++++++++. ++.
T Consensus 172 ~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~----d~~ 244 (577)
T 2ymu_A 172 LLQTLTGHSSSVWGVAFSP--DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASD----DKT 244 (577)
T ss_dssp EEEEEECCSSCEEEEEECT--TSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEET----TSC
T ss_pred eeeeccCCCcceeeeeecC--CCCEEEEEcCCCEEEEEeC-CCcEEEEEecCCCCEEEEEECCCCCEEEEEeC----CCE
Confidence 8888899999999999977 6689999999999999995 45666778888899999999999999999985 889
Q ss_pred EEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEE
Q 001319 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
|++||. +++.+..+.+|.. .+..++|+|+++.+++++.|+.|++||.. ++.+..+..+ ...|.+++|+|+++.|+
T Consensus 245 i~~w~~-~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~-~~~~~~~~~h--~~~v~~~~~~~~~~~l~ 319 (577)
T 2ymu_A 245 VKLWNR-NGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRN-GQLLQTLTGH--SSSVWGVAFSPDGQTIA 319 (577)
T ss_dssp EEEECT-TSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT-SCEEEEECCC--SSCEEEEEECTTSSEEE
T ss_pred EEEEeC-CCCEEEEEecCCC-CEEEEEEcCCCCEEEEEeCCCEEEEEeCC-CcEEEEEecC--CCCeEEEEECCCCCEEE
Confidence 999995 5677888888876 89999999999999999999999999974 5666666655 44899999999999999
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+++.|+.|++|+..... ...+
T Consensus 320 t~~~d~~i~~w~~~~~~--~~~~--------------------------------------------------------- 340 (577)
T 2ymu_A 320 SASDDKTVKLWNRNGQH--LQTL--------------------------------------------------------- 340 (577)
T ss_dssp EEETTSCEEEEETTSCE--EEEE---------------------------------------------------------
T ss_pred EEeCCCeEEEEeCCCCe--eEEE---------------------------------------------------------
Confidence 99999999999975431 1111
Q ss_pred EEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCC
Q 001319 726 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1101)
.+|...+.+++|+|+++.+++++.||.+++|+... ..+.. +. +|..
T Consensus 341 --------~~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~-----------------------~~~~~-~~--~~~~ 386 (577)
T 2ymu_A 341 --------TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-----------------------QLLQT-LT--GHSS 386 (577)
T ss_dssp --------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC-----------------------CEEEE-EE--CCSS
T ss_pred --------eCCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC-----------------------CEEEE-ec--CCCC
Confidence 23677899999999999999999999999998421 11111 11 3888
Q ss_pred CEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 806 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
.|.+++|+|||++|++++ |+.|++||. +++.+..+.+|...|++++|+| ++++|++++.|++|++||. +++.+..+
T Consensus 387 ~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~d~~v~~w~~-~~~~~~~~ 463 (577)
T 2ymu_A 387 SVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSP-DDQTIASASDDKTVKLWNR-NGQLLQTL 463 (577)
T ss_dssp CEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECT-TSSEEEEEETTSEEEEEET-TSCEEEEE
T ss_pred CeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECC-CCCEEEEEcCCCEEEEEEC-CCCEEEEE
Confidence 999999999999999998 899999995 6788889999999999999999 8999999999999999996 57788899
Q ss_pred ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEE
Q 001319 885 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYD 963 (1101)
Q Consensus 885 ~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d 963 (1101)
.+|...|++++|+||+++|++++.|++|++||.. ++.. ....+|. ..|.+++|+||+++|++++ |+.|++||
T Consensus 464 ~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~-~~~~-----~~~~~h~-~~v~~l~~s~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 464 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN-GQLL-----QTLTGHS-SSVRGVAFSPDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp ECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT-SCEE-----EEEECCS-SCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred cCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC-CCEE-----EEEeCCC-CCEEEEEEcCCCCEEEEEECcCEEEEEe
Confidence 9999999999999999999999999999999964 3432 2334444 7899999999999999854 89999999
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
. +++.+..+..| ...|++++|+|||++|++++.|++|++||
T Consensus 537 ~-~~~~~~~~~~h---~~~v~~~~fs~dg~~l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 537 R-NGQLLQTLTGH---SSSVWGVAFSPDGQTIASASSDKTVKLWN 577 (577)
T ss_dssp T-TSCEEEEEECC---SSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred C-CCCEEEEEcCC---CCCEEEEEEcCCCCEEEEEeCCCEEEEeC
Confidence 6 57777777665 89999999999999999999999999997
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=648.35 Aligned_cols=617 Identities=14% Similarity=0.173 Sum_probs=504.3
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
...+|.+.|++++|||||+ ++|+|+.||.|+|||+.+++.+. .+.+|.+.|.+++|+|||
T Consensus 610 ~~~~h~~~v~~~~~s~~~~-~l~s~~~d~~i~vw~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~ 669 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQ-RIASCGADKTLQVFKAETGEKLL-------------------DIKAHEDEVLCCAFSSDD 669 (1249)
T ss_dssp EECCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEecccccEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EeccCCCCEEEEEEecCC
Confidence 3446999999999999999 56899999999999999988765 377899999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
++||+|+.|++|+|||+.+++.+. .+.+|...|.+++|+|++...++++|+.|+.|++|| .+++++..+.+|.+.|
T Consensus 670 ~~l~s~~~d~~v~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v 746 (1249)
T 3sfz_A 670 SYIATCSADKKVKIWDSATGKLVH---TYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSV 746 (1249)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCE
T ss_pred CEEEEEeCCCeEEEEECCCCceEE---EEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCE
Confidence 999999999999999999998766 678999999999999976555899999999999999 8999999999999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC-------------CCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------------GHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------------~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
.+++|+| ++.++++++.||+|++||+.+......+... ...+.+++|+|+|+.+++++ ++
T Consensus 747 ~~~~~sp--~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-----~~ 819 (1249)
T 3sfz_A 747 NHCRFSP--DDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-----KN 819 (1249)
T ss_dssp EEEEECS--STTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-----TT
T ss_pred EEEEEec--CCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-----CC
Confidence 9999987 6689999999999999999887765544321 23688999999999999986 67
Q ss_pred eEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE
Q 001319 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1101)
.+.+||..++.....+...+...+.+++|+|+++++++++.||.|++||+.++..+..+..+. ..|.+++|+|+|+.+
T Consensus 820 ~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~h~--~~v~~v~~spdg~~l 897 (1249)
T 3sfz_A 820 KVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHL--SWVHGVMFSPDGSSF 897 (1249)
T ss_dssp EEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEE
T ss_pred cEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCCCc--cceEEEEECCCCCEE
Confidence 899999999998888874445589999999999999999999999999999999988887664 489999999999999
Q ss_pred EEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCC
Q 001319 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQ 724 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 724 (1101)
++++.|+.|++|++.+......... .......+.+++..+........ ..++. ...+.
T Consensus 898 ~s~s~dg~v~vw~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~-~~~~~ 955 (1249)
T 3sfz_A 898 LTASDDQTIRVWETKKVCKNSAIVL--------KQEIDVVFQENETMVLAVDNIRG-------------LQLIA-GKTGQ 955 (1249)
T ss_dssp EEEETTSCEEEEEHHHHHSCCSSSE--------EEEEEEEEETTEEEEEEEESSSS-------------EEEEE-ESSCC
T ss_pred EEEeCCCeEEEEEccccceeeeecc--------cceeeEEEcCCCcEEEEecCCcc-------------eEEEe-cCcce
Confidence 9999999999999875421111000 00111222222222211111000 00111 11111
Q ss_pred eEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCC
Q 001319 725 CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLE 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1101)
... .....+.+++++|+++.+++++.+|.+++|++... ..... .. +|.
T Consensus 956 ~~~-------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~----------------------~~~~~-~~--~h~ 1003 (1249)
T 3sfz_A 956 IDY-------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNN----------------------RVFSS-GV--GHK 1003 (1249)
T ss_dssp EEE-------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTT----------------------SCEEE-CC--CCS
T ss_pred EEE-------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCC----------------------ceeee-cc--cCC
Confidence 111 14567999999999999999999999999986532 11111 11 388
Q ss_pred CCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 805 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
..|.+++|+|+|+++++++ ||.|++||+.+++... +..|...|.+++|+| ++ .+++++.||.|++||+.+++.+..
T Consensus 1004 ~~v~~l~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~v~~~~~~~-~~-~l~~~~~dg~v~vwd~~~~~~~~~ 1080 (1249)
T 3sfz_A 1004 KAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVF-LQAHQETVKDFRLLQ-DS-RLLSWSFDGTVKVWNVITGRIERD 1080 (1249)
T ss_dssp SCCCCEEECSSSSCEEEECSSSBEEEEETTTTEEEC-CBCCSSCEEEEEECS-SS-EEEEEESSSEEEEEETTTTCCCEE
T ss_pred CceEEEEECCCCCEEEEEcCCCEEEEEECCCCceEE-EecCCCcEEEEEEcC-CC-cEEEEECCCcEEEEECCCCceeEE
Confidence 9999999999999999998 8999999999988764 557899999999999 65 567899999999999999999999
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEE
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY 962 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~ 962 (1101)
+.+|.+.|++++|+|++++|++++.||+|++||+.+++.... ..+|. ..+.+++|+|++++|++++ |+.|++|
T Consensus 1081 ~~~~~~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~-----l~~h~-~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A 1081 FTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHE-----LKGHN-GCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp EECCSSCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBC-----CCCCS-SCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred EcccCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeee-----eccCC-CcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 999999999999999999999999999999999998875443 33444 7899999999999999965 8999999
Q ss_pred EcCCceeeeEecc------CCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccc
Q 001319 963 DASKMERIRQWTP------QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1036 (1101)
Q Consensus 963 d~~~~~~~~~~~~------~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 1036 (1101)
|+.+++.+..+.. ...|...|++++|||||++|++++ |.|++||+.+++.+..+.. |.. .
T Consensus 1155 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~fs~dg~~l~s~~--g~v~vwd~~~g~~~~~~~~----------~~~--~ 1220 (1249)
T 3sfz_A 1155 NVSDGQLLHSCAPISVEEGTATHGGWVTDVCFSPDSKTLVSAG--GYLKWWNVATGDSSQTFYT----------NGT--N 1220 (1249)
T ss_dssp ESSSSCCCCCCCCCC-------CCSCCCEEEECTTSSCEEEES--SSEEEBCSSSCBCCCCCCC----------SSC--C
T ss_pred ECCCCceEEEeccccccccccccCceEEEEEECCCCCEEEECC--CeEEEEECCCCceeeeeec----------cCC--c
Confidence 9999988766521 134588999999999999999886 8999999999988765542 333 3
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1037 PLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1037 ~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
+.+++|+| |+.+|++++.||.|++|++.
T Consensus 1221 i~~~~~s~-dg~~l~~~~~dg~v~vw~l~ 1248 (1249)
T 3sfz_A 1221 LKKIHVSP-DFRTYVTVDNLGILYILQVL 1248 (1249)
T ss_dssp CCCCEECS-SSCCEEEECTTCCEEEECCC
T ss_pred ccEEEECC-CCCEEEEecCCcEEEEEeec
Confidence 45789999 79999999999999999975
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-59 Score=571.17 Aligned_cols=558 Identities=11% Similarity=0.163 Sum_probs=470.6
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCC----ceeccccceeecccccCccccccccccCCcc-EEEEEEcc
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR----DRLVSKPFKIWDMAACSLPFQASIFKDVPIS-VSRVAWSP 416 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~----~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~-v~~~~~sp 416 (1101)
.|.+.|.+++|||||++ +|+++ ++.|+|||+.++ +... .+.+|... |.+++|+|
T Consensus 16 ~~~~~v~~~~~spdg~~-l~~~~-~~~v~v~~~~~~~~~~~~~~-------------------~~~~h~~~~v~~~~~sp 74 (615)
T 1pgu_A 16 TQRNFTTHLSYDPTTNA-IAYPC-GKSAFVRCLDDGDSKVPPVV-------------------QFTGHGSSVVTTVKFSP 74 (615)
T ss_dssp CCTTCCCCCEEETTTTE-EEEEE-TTEEEEEECCSSCCSSCSEE-------------------EECTTTTSCEEEEEECS
T ss_pred CccCceeEEEECCCCCE-EEEec-CCeEEEEECCCCCCccccce-------------------EEecCCCceEEEEEECc
Confidence 47889999999999995 56765 889999999987 4433 47889999 99999999
Q ss_pred --CCCEEEEEECCCeEEEEeecCCc-----ccccceeeecccCcEEEEEEecCCCceEEEEecCC----ceEEEEEcCCc
Q 001319 417 --DGNYVGVAFTKHLIQLYSYAGSN-----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWELSGR 485 (1101)
Q Consensus 417 --dg~~las~~~d~~i~vwd~~~~~-----~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d----~~v~iwd~~~~ 485 (1101)
|+++||+|+.||.|++||+.+++ .......+.+|...|.+++|+|+++ +|++++.+ +.|++|| .++
T Consensus 75 ~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~--~l~~~~~~~~~~~~v~~~d-~~~ 151 (615)
T 1pgu_A 75 IKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGR--RLCVVGEGRDNFGVFISWD-SGN 151 (615)
T ss_dssp STTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEECCSSCSEEEEETT-TCC
T ss_pred CCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCC--EEEEeccCCCCccEEEEEE-CCC
Confidence 99999999999999999998651 1122336778999999999999999 78888877 7899998 677
Q ss_pred eeEEeecCCcCeEEEecccCCCcc-EEEEeccCCeEEEEecCCCCeeeeccCCCC---ceEEEEEccC-CCEEEEeecCC
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDTMGSRVDYDAPGH---WCTTMLYSAD-GSRLFSCGTSK 560 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~---~v~~~~~s~d-~~~l~~~~~~~ 560 (1101)
.+..+.+|...|.+++|+++ +. .+++++.|+.|++||+.+.+....+..+.. .|.+++|+|+ ++++++++.
T Consensus 152 ~~~~~~~~~~~v~~~~~~~~--~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~-- 227 (615)
T 1pgu_A 152 SLGEVSGHSQRINACHLKQS--RPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS-- 227 (615)
T ss_dssp EEEECCSCSSCEEEEEECSS--SSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET--
T ss_pred cceeeecCCccEEEEEECCC--CCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeC--
Confidence 88999999999999999884 44 899999999999999999998888888888 9999999999 999999986
Q ss_pred CCCceEEEEeCCCCeeEEEe-c---ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC--CCCCCe
Q 001319 561 DGDSFLVEWNESEGTIKRTY-A---GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPR 634 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~-~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~ 634 (1101)
++.|++||+.+++.+..+ . +|.. .+..++|+ +++++++++.|+.|++||+.+++.+..+..+.. ...+.+
T Consensus 228 --dg~i~vwd~~~~~~~~~~~~~~~~~~~-~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~ 303 (615)
T 1pgu_A 228 --DRKISCFDGKSGEFLKYIEDDQEPVQG-GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVG 303 (615)
T ss_dssp --TCCEEEEETTTCCEEEECCBTTBCCCS-CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEE
T ss_pred --CCeEEEEECCCCCEeEEecccccccCC-ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcccCceeE
Confidence 889999999999999998 5 5655 89999999 999999999999999999999999888876521 134667
Q ss_pred eEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCce
Q 001319 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1101)
Q Consensus 635 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1101)
+.|+ ++.++++++.|+.|++||+.++ .....+
T Consensus 304 ~~~~-~~~~l~~~~~~g~i~~~d~~~~-~~~~~~---------------------------------------------- 335 (615)
T 1pgu_A 304 VVAT-GNGRIISLSLDGTLNFYELGHD-EVLKTI---------------------------------------------- 335 (615)
T ss_dssp EEEE-ETTEEEEEETTSCEEEEETTEE-EEEEEE----------------------------------------------
T ss_pred EEeC-CCCeEEEEECCCCEEEEECCCC-cEEEEE----------------------------------------------
Confidence 7775 8999999999999999998764 222211
Q ss_pred EEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccce
Q 001319 715 ILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 715 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1101)
.+|...|.+++| |+ +++++.||.+++|++. .+
T Consensus 336 -------------------~~~~~~v~~~~~-~~---l~~~~~dg~i~~w~~~-------------------------~~ 367 (615)
T 1pgu_A 336 -------------------SGHNKGITALTV-NP---LISGSYDGRIMEWSSS-------------------------SM 367 (615)
T ss_dssp -------------------CCCSSCEEEEET-TT---TEEEETTSCEEETTTT-------------------------EE
T ss_pred -------------------eCCCCCEEEEEe-cC---cEEECCCCeEEEEEch-------------------------hh
Confidence 237888999999 88 9999999999999753 01
Q ss_pred eeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 795 ANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
. ..|...|.+++| +++..+++++ |+.|++||+.+++... .+.+++|+| ++.+++++ .++.+.+|
T Consensus 368 ~-----~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~~~~-------~~~~~~~s~-~~~~~~~~-~~~~~~~~ 432 (615)
T 1pgu_A 368 H-----QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHEFGS-------QPKVASANN-DGFTAVLT-NDDDLLIL 432 (615)
T ss_dssp E-----CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEECSS-------CEEEEEECS-SSEEEEEE-TTSEEEEE
T ss_pred c-----CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCcccC-------CceEEEEcC-CCCEEEEe-CCCceEEE
Confidence 1 138899999999 5566666666 9999999987655432 678999999 88888777 78999999
Q ss_pred EeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 874 NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 874 d~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
++.+++.+..+. |...+.+++|+ +++|++++. |+.|++||+.+++... ....++. ..+.+++|+|++++|+
T Consensus 433 ~~~~~~~~~~~~-~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~~~~----~~~~~~~-~~v~~~~~s~~g~~l~ 504 (615)
T 1pgu_A 433 QSFTGDIIKSVR-LNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLEVSF----DLKTPLR-AKPSYISISPSETYIA 504 (615)
T ss_dssp ETTTCCEEEEEE-CSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEEEEE----ECSSCCS-SCEEEEEECTTSSEEE
T ss_pred eccCCceeeecc-cCCCceEEEEc--CCEEEEeecCCCeEEEEECCCccccc----cccCCcc-CceEEEEECCCCCEEE
Confidence 999999888876 88999999999 889999999 9999999999864321 2333443 7899999999999999
Q ss_pred EEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc----------CCCEEEEEeCCCcEEEEeCCCC-ceeEeeCC
Q 001319 953 VVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC----------NSQLVFATFCDGNIGVFDADTL-RLRCYIAP 1020 (1101)
Q Consensus 953 ~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~----------dg~~l~s~~~dg~i~vwd~~~~-~~~~~~~~ 1020 (1101)
+++ |+.|++||+.+++.+..+... |...|++++|+| ++++|++|+.||.|++||+.++ +.+..+..
T Consensus 505 ~~~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~ 582 (615)
T 1pgu_A 505 AGDVMGKILLYDLQSREVKTSRWAF--RTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA 582 (615)
T ss_dssp EEETTSCEEEEETTTTEEEECCSCC--CSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred EcCCCCeEEEeeCCCCcceeEeecC--CCCceeEEEEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhc
Confidence 965 899999999999998876651 389999999999 9999999999999999999998 56655542
Q ss_pred CCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1021 STYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1021 ~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
|. ..+.+++|+| ++. |++++.||+|++|++.+
T Consensus 583 ----------h~--~~v~~l~~s~-~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 583 ----------HK--DGVNNLLWET-PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp ----------ST--TCEEEEEEEE-TTE-EEEEETTSCEEEEEEC-
T ss_pred ----------Cc--cceEEEEEcC-CCC-eEEecCCceEEEEeeec
Confidence 44 4567999999 577 99999999999999875
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-58 Score=604.16 Aligned_cols=568 Identities=16% Similarity=0.250 Sum_probs=476.1
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|.+.|++++|||||++||+|+.||+|++||+.+++.+. .+.+|.+.|.+++|+|+++ ++++++.|++|++|
T Consensus 610 ~~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~~~d~~v~vw 684 (1249)
T 3sfz_A 610 VVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLL---DIKAHEDEVLCCAFSSDDS--YIATCSADKKVKIW 684 (1249)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEE---EeccCCCCEEEEEEecCCC--EEEEEeCCCeEEEE
Confidence 578999999999999999999999999999999999998766 6789999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .+++++..+.+|...|.+++|++..++.++++++.|+.|++||+.++.....+..|...|.+++|+|+++++++++.
T Consensus 685 d~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~- 763 (1249)
T 3sfz_A 685 DSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSA- 763 (1249)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEES-
T ss_pred ECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEEC-
Confidence 9 89999999999999999999999777789999999999999999999999999999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccC------------CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFR------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1101)
++.|++||+.+++....+.... ...+.+++|+|+++.+++++ ++.+.+||+.++.....+.. +
T Consensus 764 ---dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~-~ 838 (1249)
T 3sfz_A 764 ---DGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHT-G 838 (1249)
T ss_dssp ---SSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEEC-S
T ss_pred ---CCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEc-CCcEEEEEecCCCceeEEcC-C
Confidence 8999999999998877664321 12567789999999999887 68999999999988877752 3
Q ss_pred CCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccC
Q 001319 628 GLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSS 707 (1101)
Q Consensus 628 ~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~ 707 (1101)
+...|.+++|+|+++++++++.|+.|++|++.++ .....+
T Consensus 839 ~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~-~~~~~~--------------------------------------- 878 (1249)
T 3sfz_A 839 HHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSR-LKVADC--------------------------------------- 878 (1249)
T ss_dssp SSSCCCEEEECSSTTEEEEECSSSCEEEEETTTT-EEEEEE---------------------------------------
T ss_pred CCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCC-ceeeec---------------------------------------
Confidence 3458999999999999999999999999998765 221111
Q ss_pred CCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeee-------
Q 001319 708 PVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATAS------- 780 (1101)
Q Consensus 708 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~------- 780 (1101)
.+|...|.+++|+|++..+++++.||.+++|++..............
T Consensus 879 --------------------------~~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~ 932 (1249)
T 3sfz_A 879 --------------------------RGHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVLKQEIDVVFQE 932 (1249)
T ss_dssp --------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSEEEEEEEEEET
T ss_pred --------------------------CCCccceEEEEECCCCCEEEEEeCCCeEEEEEccccceeeeecccceeeEEEcC
Confidence 33788899999999999999999999999999764321111000000
Q ss_pred -----------ccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCe
Q 001319 781 -----------AVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 848 (1101)
Q Consensus 781 -----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i 848 (1101)
.....+...++.... .....+.+++++|+++++++++ +|.|++||+.+++....+.+|...|
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~i~~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~~~~~~~h~~~v 1006 (1249)
T 3sfz_A 933 NETMVLAVDNIRGLQLIAGKTGQIDY------LPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAV 1006 (1249)
T ss_dssp TEEEEEEEESSSSEEEEEESSCCEEE------ECCSCEEEEEECTTSSEEEEEETTSCCEEEETTTTSCEEECCCCSSCC
T ss_pred CCcEEEEecCCcceEEEecCcceEEE------cccCcEEEEEEcCCCCEEEEEcCCCCEEEEEcCCCceeeecccCCCce
Confidence 011122222222221 1456799999999999999998 8999999999999999999999999
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 849 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
++++|+| ++++|++++.||.|++||+.+++.. .+.+|...|.+++|++++ .+++++.||+|++||+.+++......
T Consensus 1007 ~~l~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~-~~~~~~~~v~~~~~~~~~-~l~~~~~dg~v~vwd~~~~~~~~~~~- 1082 (1249)
T 3sfz_A 1007 RHIQFTA-DGKTLISSSEDSVIQVWNWQTGDYV-FLQAHQETVKDFRLLQDS-RLLSWSFDGTVKVWNVITGRIERDFT- 1082 (1249)
T ss_dssp CCEEECS-SSSCEEEECSSSBEEEEETTTTEEE-CCBCCSSCEEEEEECSSS-EEEEEESSSEEEEEETTTTCCCEEEE-
T ss_pred EEEEECC-CCCEEEEEcCCCEEEEEECCCCceE-EEecCCCcEEEEEEcCCC-cEEEEECCCcEEEEECCCCceeEEEc-
Confidence 9999999 8999999999999999999999876 456899999999999975 67889999999999999987654432
Q ss_pred eecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 929 HIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 929 ~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
++. ..+.+++|+|++.++++++ |+.|++||+.+++.+..+..| ...|++++|+|||++|++|+.||.|++|
T Consensus 1083 ----~~~-~~v~~~~~s~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~h---~~~v~~~~~s~dg~~lat~~~dg~i~vw 1154 (1249)
T 3sfz_A 1083 ----CHQ-GTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGH---NGCVRCSAFSLDGILLATGDDNGEIRIW 1154 (1249)
T ss_dssp ----CCS-SCCCCEEECSSSSSCEEECCSSCCCEECSSSSSCSBCCCCC---SSCEEEEEECSSSSEEEEEETTSCCCEE
T ss_pred ----ccC-CcEEEEEECCCCCEEEEEcCCCcEEEEECCCcceeeeeccC---CCcEEEEEECCCCCEEEEEeCCCEEEEE
Confidence 233 6799999999999999864 999999999999988777654 8899999999999999999999999999
Q ss_pred eCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCC
Q 001319 1008 DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEG 1069 (1101)
Q Consensus 1008 d~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~ 1069 (1101)
|+.+++.+..+.+..... ...+|.. .+.+++|+| |+.+|++++ |.|++||+.+++.
T Consensus 1155 d~~~~~~~~~~~~~~~~~-~~~~~~~--~v~~l~fs~-dg~~l~s~~--g~v~vwd~~~g~~ 1210 (1249)
T 3sfz_A 1155 NVSDGQLLHSCAPISVEE-GTATHGG--WVTDVCFSP-DSKTLVSAG--GYLKWWNVATGDS 1210 (1249)
T ss_dssp ESSSSCCCCCCCCCC--------CCS--CCCEEEECT-TSSCEEEES--SSEEEBCSSSCBC
T ss_pred ECCCCceEEEeccccccc-cccccCc--eEEEEEECC-CCCEEEECC--CeEEEEECCCCce
Confidence 999998876653211111 1112443 456899999 788998885 9999999999883
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-57 Score=565.94 Aligned_cols=602 Identities=10% Similarity=0.086 Sum_probs=447.3
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.....+|.+.|++++|+|+|+ +||+|+.||.|+||+..+++... ...|...|.+++|+|
T Consensus 10 ~~~~~gh~~~V~~lafspdg~-~lAsgs~Dg~I~lw~~~~~~~~~--------------------~~~~~~~V~~l~fsp 68 (902)
T 2oaj_A 10 ETNKYGMSSKPIAAAFDFTQN-LLAIATVTGEVHIYGQQQVEVVI--------------------KLEDRSAIKEMRFVK 68 (902)
T ss_dssp EEEEEECSSCEEEEEEETTTT-EEEEEETTSEEEEECSTTCEEEE--------------------ECSSCCCEEEEEEET
T ss_pred cccccCCCCCcEEEEECCCCC-EEEEEeCCCEEEEEeCCCcEEEE--------------------EcCCCCCEEEEEEcC
Confidence 345568999999999999998 67999999999999987765432 234788999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee--------
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL-------- 487 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~-------- 487 (1101)
|++||+++.|++|++||+.+++.+. .+. |.+.|++++|+|+++ ++++|+.||+|++|| .++++.
T Consensus 69 -g~~L~S~s~D~~v~lWd~~~~~~~~---~~~-~~~~V~~v~~sp~g~--~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~ 141 (902)
T 2oaj_A 69 -GIYLVVINAKDTVYVLSLYSQKVLT---TVF-VPGKITSIDTDASLD--WMLIGLQNGSMIVYDIDRDQLSSFKLDNLQ 141 (902)
T ss_dssp -TTEEEEEETTCEEEEEETTTCSEEE---EEE-CSSCEEEEECCTTCS--EEEEEETTSCEEEEETTTTEEEEEEECCHH
T ss_pred -CCEEEEEECcCeEEEEECCCCcEEE---EEc-CCCCEEEEEECCCCC--EEEEEcCCCcEEEEECCCCccccceecccc
Confidence 8899999999999999999988765 443 778999999999999 899999999999999 555543
Q ss_pred ---EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC------------------CCceEEEEE
Q 001319 488 ---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------------------GHWCTTMLY 546 (1101)
Q Consensus 488 ---~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------------------~~~v~~~~~ 546 (1101)
..+.+|.++|.+++|+|. ++..+++++.|+.| +||+++.+....+..+ ...|.+++|
T Consensus 142 ~~~~~~~~h~~~V~sl~~sp~-~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~f 219 (902)
T 2oaj_A 142 KSSFFPAARLSPIVSIQWNPR-DIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLY 219 (902)
T ss_dssp HHHTCSSSCCCCCCEEEEETT-EEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEE
T ss_pred ccccccccCCCCeEEEEEccC-CCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEE
Confidence 234679999999999885 34689999999999 9999998877666554 357999999
Q ss_pred ccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE--ec---cc------------CCcceEEEEEeC----CC-CEEEEEe
Q 001319 547 SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT--YA---GF------------RKKSNGVVQFDT----TQ-NHFLAVG 604 (1101)
Q Consensus 547 s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~--~~---~~------------~~~~v~~~~~~~----~~-~~l~~~~ 604 (1101)
+|+|++|++++. |+.|++||+.+++++.. +. +| ....|..++|++ ++ ..+++|+
T Consensus 220 spdg~~lasgs~----Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~ 295 (902)
T 2oaj_A 220 HPNSLHIITIHE----DNSLVFWDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHK 295 (902)
T ss_dssp CTTSSEEEEEET----TCCEEEEETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEE
T ss_pred cCCCCEEEEEEC----CCeEEEEECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCC
Confidence 999999999986 89999999999987764 21 22 122688999964 43 4566666
Q ss_pred CC-----CcEEEEECC------------------CCeeeEeeccCCCCCCCCeeEEec----------CCCEEEEEEcCC
Q 001319 605 ED-----SQIKFWDMD------------------NVNILTSTDAEGGLPNLPRLRFSK----------EGNLLAVTTADN 651 (1101)
Q Consensus 605 ~d-----g~i~iwd~~------------------~~~~~~~~~~~~~~~~v~~v~~s~----------~g~~l~~~~~d~ 651 (1101)
.| +.+.+|++. +.+....+.. .+...|.++.+.+ ++..+++++.|+
T Consensus 296 ~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg 374 (902)
T 2oaj_A 296 SISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPL-PTNVPIVNILPIPRQSPYFAGCHNPGLILLILGNG 374 (902)
T ss_dssp CSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECC-SSSSCEEEEEECCSSCSHHHHTBSCSEEEEEETTS
T ss_pred CCCCCCCceEEEEecCCCCCccccchhhhhhhhcCccceEEEec-CCCCceEEEEECCCCCCCcCCCCCceeEEEEcCCC
Confidence 65 378899852 1222333322 1123567777654 345789999999
Q ss_pred cEEEEEccccccccccccCC-CcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 652 GFKILANAIGLRSLRAVENP-PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 652 ~i~iwd~~~~~~~~~~~~~~-~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
.|++|++.++.........+ ........++++++++....+-.+..... .... ..+
T Consensus 375 ~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~---------------------~~~~--~~l 431 (902)
T 2oaj_A 375 EIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAA---------------------QNKD--YLL 431 (902)
T ss_dssp CEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTT---------------------BCCC--CSC
T ss_pred cEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcc---------------------cCCC--Ccc
Confidence 99999997663222211111 11223356777777654332211100000 0000 011
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
.+|...+..++|+|+++.+++++.||+|++||+........ ..+... +... ...+|...|.++
T Consensus 432 ---~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~---------~~~~~~----l~~~-~~~~h~~~V~sv 494 (902)
T 2oaj_A 432 ---KGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN---------ASFEVN----LSRT-LNKAKELAVDKI 494 (902)
T ss_dssp ---CCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT---------BCEEEE----HHHH-TTCSSSCCEEEE
T ss_pred ---cCCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCC---------ceEEee----chhh-cCCCCCCceeEE
Confidence 44777788899999999999999999999999875421100 000000 0000 011488899999
Q ss_pred EecCCCCeEEEEc-CCeEEEEECCCc---------------------------------------------eEEEEeeCC
Q 001319 811 ALSKNDSYVMSAT-GGKISLFNMMTF---------------------------------------------KVMTTFMSP 844 (1101)
Q Consensus 811 ~~s~dg~~la~~~-dg~i~vwd~~~~---------------------------------------------~~~~~~~~~ 844 (1101)
+|+|||++||+|+ ||+|+|||+.++ +++..+.+|
T Consensus 495 afspdg~~LAsgs~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h 574 (902)
T 2oaj_A 495 SFAAETLELAVSIETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHAN 574 (902)
T ss_dssp EEETTTTEEEEEETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCC
T ss_pred EecCCCCeEEEEecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcC
Confidence 9999999999998 899999999765 346778889
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE-----eec-cCCCCeeEEEEc-----CCC---CEEEEEeCCC
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS-----KLK-GHQKRITGLAFS-----TSL---NILVSSGADA 910 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~-----~~~-~h~~~V~~l~~s-----~d~---~~l~s~s~Dg 910 (1101)
.+.|++++||| +| +||+|+.|++|+|||+.++..+. .+. +|.+.|++++|+ ||| ++|++|+.|+
T Consensus 575 ~~~V~svafSp-dG-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~ 652 (902)
T 2oaj_A 575 KGKTSAINNSN-IG-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMG 652 (902)
T ss_dssp SCSEEEEEECB-TS-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTS
T ss_pred CCcEEEEEecC-Cc-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCC
Confidence 99999999999 88 99999999999999998877653 343 899999999999 885 8999999999
Q ss_pred cEEEEEC---CCCccccceEEeecCCCCCCCcceEE-Ec----------------------CCCCEEEEEeCCeEEEEEc
Q 001319 911 QLCVWSI---DTWEKRKSVTIHIPAGKTPTGDTRVQ-FN----------------------ADQVRMLVVHETQLAIYDA 964 (1101)
Q Consensus 911 ~v~lwd~---~~~~~~~~~~~~~~~~~~~~~v~~~~-~s----------------------~d~~~l~~~~d~~i~v~d~ 964 (1101)
+|++||+ .+|+....+.-+....+. ..+..++ |+ +++..|+ +.+..++||++
T Consensus 653 tv~~wd~~p~~~g~~~~~~~~~~~~~~~-~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~-~~~~~ir~~~~ 730 (902)
T 2oaj_A 653 EVITYKILPASGGKFDVQLMDITNVTSK-GPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLI-TGFDDIRLITL 730 (902)
T ss_dssp EEEEEEEEECGGGCEEEEEEEEEECCSS-CCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEE-ECSSEEEEECT
T ss_pred cEEEEEEecCCCCcEEEEecCceecCCC-CceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEE-EeccceEEEeC
Confidence 9999999 777755444333222112 4555555 55 4555444 44889999999
Q ss_pred CCceeeeEeccCCCCCCCEEEE---E------EccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 965 SKMERIRQWTPQDALSAPISCA---V------YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 965 ~~~~~~~~~~~~~~h~~~v~~v---~------~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.+++.......+ ...+.++ . |+++|..|++++.||.|++|++.+++++..+..
T Consensus 731 ~~~k~~~k~~~~---~~~~~~v~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~ 792 (902)
T 2oaj_A 731 GKSKSTHKGFKY---PLAATGLSYISTVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEHI 792 (902)
T ss_dssp TCCCEEEEECSS---CEEEEEEEEEEEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred ccccceeeEccc---ceeeeEEEEEEeccccccccCceEEEEEeCCCcEEEEECcchHHHhhccC
Confidence 999988777443 4556665 6 789999999999999999999999999988874
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6e-56 Score=539.93 Aligned_cols=536 Identities=14% Similarity=0.202 Sum_probs=453.1
Q ss_pred ccccCCC--C-cceeEeecCCCc-EEEEEEec--CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 327 TWSLDDL--P-RTVAVSLHQGST-VISMDFHP--SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 327 ~~~~~~~--~-~~~~~~~~h~~~-V~~v~fsp--dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+|+.+.. + .......+|.+. |++++|+| +|+ +||+|+.||.|+|||+.++........ ....
T Consensus 43 v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~sp~~~~~-~l~s~~~dg~v~vw~~~~~~~~~~~~~-----------~~~~ 110 (615)
T 1pgu_A 43 VRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQ-YLCSGDESGKVIVWGWTFDKESNSVEV-----------NVKS 110 (615)
T ss_dssp EEECCSSCCSSCSEEEECTTTTSCEEEEEECSSTTCC-EEEEEETTSEEEEEEEEEEGGGTEEEE-----------EEEE
T ss_pred EEECCCCCCccccceEEecCCCceEEEEEECcCCCCC-EEEEecCCCEEEEEeCCCCcccccccc-----------cccc
Confidence 7777643 1 334444569999 99999999 998 568999999999999976511000000 0112
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL 476 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~ 476 (1101)
.+.+|...|.+++|+|||++|++++.+ +.|++|| .++.+. .+.+|...|.+++|+|+++. .+++++.|+.
T Consensus 111 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~---~~~~~~~~v~~~~~~~~~~~-~l~~~~~d~~ 184 (615)
T 1pgu_A 111 EFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLG---EVSGHSQRINACHLKQSRPM-RSMTVGDDGS 184 (615)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEE---ECCSCSSCEEEEEECSSSSC-EEEEEETTTE
T ss_pred hhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcce---eeecCCccEEEEEECCCCCc-EEEEEeCCCc
Confidence 367799999999999999999999988 6889998 444444 67899999999999999975 6999999999
Q ss_pred EEEEE-cCCceeEEeecCCc---CeEEEecccCCC-ccEEEEeccCCeEEEEecCCCCeeeec-c---CCCCceEEEEEc
Q 001319 477 IKVWE-LSGRKLFNFEGHEA---PVYSICPHHKEN-IQFIFSTAIDGKIKAWLYDTMGSRVDY-D---APGHWCTTMLYS 547 (1101)
Q Consensus 477 v~iwd-~~~~~~~~~~~h~~---~v~~v~~~~~~~-~~~l~s~~~d~~i~~wd~~~~~~~~~~-~---~~~~~v~~~~~s 547 (1101)
|++|| .+++.+..+.+|.. .|.+++|++ + +.+|++++.|+.|++||+.+++....+ . .+...|.+++|+
T Consensus 185 v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~ 262 (615)
T 1pgu_A 185 VVFYQGPPFKFSASDRTHHKQGSFVRDVEFSP--DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL 262 (615)
T ss_dssp EEEEETTTBEEEEEECSSSCTTCCEEEEEECS--TTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES
T ss_pred EEEEeCCCcceeeeecccCCCCceEEEEEECC--CCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc
Confidence 99999 88899999999999 999999987 5 689999999999999999999988888 5 788899999999
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC---CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR---KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
+++++++++. ++.|++||+.+++.+..+..+. ...+..+.+. +++++++++.||.|++||+.+++.+..+.
T Consensus 263 -~~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~~ 336 (615)
T 1pgu_A 263 -DSQKFATVGA----DATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTIS 336 (615)
T ss_dssp -SSSEEEEEET----TSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEEC
T ss_pred -CCCEEEEEcC----CCcEEEEECCCCcEEEEEcCCCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEEe
Confidence 9999999986 8999999999999999988763 2356667775 88999999999999999999998888887
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCccee
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVE 704 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~ 704 (1101)
.+. ..|.+++| |+ +++++.||.|++|++. .+.
T Consensus 337 ~~~--~~v~~~~~-~~---l~~~~~dg~i~~w~~~----~~~-------------------------------------- 368 (615)
T 1pgu_A 337 GHN--KGITALTV-NP---LISGSYDGRIMEWSSS----SMH-------------------------------------- 368 (615)
T ss_dssp CCS--SCEEEEET-TT---TEEEETTSCEEETTTT----EEE--------------------------------------
T ss_pred CCC--CCEEEEEe-cC---cEEECCCCeEEEEEch----hhc--------------------------------------
Confidence 654 48999999 88 9999999999999875 110
Q ss_pred ccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecccc
Q 001319 705 RSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQ 784 (1101)
Q Consensus 705 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~ 784 (1101)
..|...|.+++| +++..+++++.||.+++|++....
T Consensus 369 -----------------------------~~~~~~v~~~~~-~~~~~l~~~~~d~~i~~~~~~~~~-------------- 404 (615)
T 1pgu_A 369 -----------------------------QDHSNLIVSLDN-SKAQEYSSISWDDTLKVNGITKHE-------------- 404 (615)
T ss_dssp -----------------------------CCCCSCEEEEEC-CSTTCCEEEETTTEEEETTEEEEE--------------
T ss_pred -----------------------------CcccCceEEEEE-CCCcEEEEEeCCCCEEEEEcccCc--------------
Confidence 116778899999 667889999999999999875321
Q ss_pred ccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEE
Q 001319 785 HWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 785 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g 864 (1101)
....+.+++++|++.+++++.++.+.+|+..+++.+..+. +...+.+++|+ +++|+++
T Consensus 405 ------------------~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~l~~~ 462 (615)
T 1pgu_A 405 ------------------FGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVR-LNSPGSAVSLS---QNYVAVG 462 (615)
T ss_dssp ------------------CSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEE-CSSCEEEEEEC---SSEEEEE
T ss_pred ------------------ccCCceEEEEcCCCCEEEEeCCCceEEEeccCCceeeecc-cCCCceEEEEc---CCEEEEe
Confidence 1225788999999999999989999999999999988887 78899999998 6799999
Q ss_pred eC-CCcEEEEEeecceEE-EeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceE
Q 001319 865 TE-DSTIHIYNVRVDEVK-SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 942 (1101)
Q Consensus 865 ~~-dg~v~iwd~~~~~~~-~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 942 (1101)
+. ||.|++||+.+++.. ..+.+|...|++++|+|++++|++++.||.|++||+.+++.. ....+.....+.++
T Consensus 463 ~~~d~~i~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~~~-----~~~~~~h~~~v~~~ 537 (615)
T 1pgu_A 463 LEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVK-----TSRWAFRTSKINAI 537 (615)
T ss_dssp ETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE-----ECCSCCCSSCEEEE
T ss_pred ecCCCeEEEEECCCccccccccCCccCceEEEEECCCCCEEEEcCCCCeEEEeeCCCCcce-----eEeecCCCCceeEE
Confidence 99 999999999988776 778899999999999999999999999999999999987653 23333123789999
Q ss_pred EEcC----------CCCEEEEEe-CCeEEEEEcCCc-eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 943 QFNA----------DQVRMLVVH-ETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 943 ~~s~----------d~~~l~~~~-d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
+|+| ++.+|++++ |+.|++||+.++ +.+..+..| ...|++++|+|||+ |++++.||.|++|+++
T Consensus 538 ~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~h---~~~v~~l~~s~~~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 538 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH---KDGVNNLLWETPST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS---TTCEEEEEEEETTE-EEEEETTSCEEEEEEC
T ss_pred EEcCccccccccccCCCEEEEEcCCCcEEEEECCCCceechhhhcC---ccceEEEEEcCCCC-eEEecCCceEEEEeee
Confidence 9999 999999965 899999999998 667666554 89999999999999 9999999999999987
Q ss_pred C
Q 001319 1011 T 1011 (1101)
Q Consensus 1011 ~ 1011 (1101)
+
T Consensus 614 ~ 614 (615)
T 1pgu_A 614 L 614 (615)
T ss_dssp -
T ss_pred c
Confidence 5
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=548.74 Aligned_cols=592 Identities=11% Similarity=0.098 Sum_probs=433.1
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+|...|++++|+|||++||+|+.||+|+|||..+++... ...|...|++++|+| |+ +|++++.|++|++||
T Consensus 13 ~~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~~~~~----~~~~~~~V~~l~fsp-g~--~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 13 KYGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQVEVVI----KLEDRSAIKEMRFVK-GI--YLVVINAKDTVYVLS 85 (902)
T ss_dssp EEECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTCEEEE----ECSSCCCEEEEEEET-TT--EEEEEETTCEEEEEE
T ss_pred ccCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCcEEEE----EcCCCCCEEEEEEcC-CC--EEEEEECcCeEEEEE
Confidence 45799999999999999999999999999999998765443 235788999999999 77 799999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee-----------eeccCCCCceEEEEEccC
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-----------VDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-----------~~~~~~~~~v~~~~~s~d 549 (1101)
.+++++..+. |.+.|++++|+| ++.+|++|+.||+|++||+++.... .....|...|.+++|+|+
T Consensus 86 ~~~~~~~~~~~-~~~~V~~v~~sp--~g~~l~sgs~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~ 162 (902)
T 2oaj_A 86 LYSQKVLTTVF-VPGKITSIDTDA--SLDWMLIGLQNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR 162 (902)
T ss_dssp TTTCSEEEEEE-CSSCEEEEECCT--TCSEEEEEETTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT
T ss_pred CCCCcEEEEEc-CCCCEEEEEECC--CCCEEEEEcCCCcEEEEECCCCccccceeccccccccccccCCCCeEEEEEccC
Confidence 8888888886 778999999987 6689999999999999999887653 233567789999999996
Q ss_pred C-CEEEEeecCCCCCceEEEEeCCCCeeEEEeccc-----------------CCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 550 G-SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-----------------RKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 550 ~-~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-----------------~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
+ ..+++++. ++.| +||+++++.++.+.++ +...+.+++|+|+|++|++++.||.|++
T Consensus 163 ~~~~l~~g~~----dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~l 237 (902)
T 2oaj_A 163 DIGTVLISYE----YVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVF 237 (902)
T ss_dssp EEEEEEEECS----SCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCEEEEEeC----CCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEEEECCCeEEE
Confidence 4 67777764 8899 9999999999988766 1236999999999999999999999999
Q ss_pred EECCCCeeeEeec-----cC-----------CCCCCCCeeEEec----CC-CEEEEEEcC-----CcEEEEEcccccccc
Q 001319 612 WDMDNVNILTSTD-----AE-----------GGLPNLPRLRFSK----EG-NLLAVTTAD-----NGFKILANAIGLRSL 665 (1101)
Q Consensus 612 wd~~~~~~~~~~~-----~~-----------~~~~~v~~v~~s~----~g-~~l~~~~~d-----~~i~iwd~~~~~~~~ 665 (1101)
||+.+++.+.... .+ .+...|.+++|++ ++ .++++|+.+ +.+.+|++..... .
T Consensus 238 Wd~~~g~~~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~-~ 316 (902)
T 2oaj_A 238 WDANSGHMIMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPR-Y 316 (902)
T ss_dssp EETTTCCEEEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCC-G
T ss_pred EECCCCcEEEEEeecccccCCCCCcCCCCCccccCCeeEEEEEecCCCCCCEEEEeCCCCCCCCCceEEEEecCCCCC-c
Confidence 9999988765421 11 1233689999964 43 567777665 3788888532100 0
Q ss_pred ccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEe
Q 001319 666 RAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLY 745 (1101)
Q Consensus 666 ~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 745 (1101)
. . + ..+. +. . + +......+.+. ..+...|..+.+
T Consensus 317 ~-~-~-s~~~----~~--~-------------------------------~--~~~~~~~~~~~----~~~~~~v~~~~~ 350 (902)
T 2oaj_A 317 S-I-T-SYEG----MK--N-------------------------------Y--YANPKQMKIFP----LPTNVPIVNILP 350 (902)
T ss_dssp G-G-C-CHHH----HH--H-------------------------------H--HHSCSEEEEEC----CSSSSCEEEEEE
T ss_pred c-c-c-chhh----hh--h-------------------------------h--hcCccceEEEe----cCCCCceEEEEE
Confidence 0 0 0 0000 00 0 0 00000001111 113456666666
Q ss_pred ec----------CcccEEEeecCCeEEEEEecCCCCCCC------------CCe----eeeccccccccCC---ccceee
Q 001319 746 TN----------SAVGLLALGSNGVQKLWKWHRNEQNPS------------GKA----TASAVPQHWLPSS---GLLMAN 796 (1101)
Q Consensus 746 s~----------~~~~l~~~~~dg~v~~w~~~~~~~~~~------------~~~----~~~~~~~~~~~~~---~~~~~~ 796 (1101)
.+ +...+++++.||.+++|++........ ... .......+|+... +.. ..
T Consensus 351 ~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~~~~~~v~~~~~s~~~~~~w~~~~~~~~~~-~~ 429 (902)
T 2oaj_A 351 IPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLSWLRPLATTSMAASVPNKLWLGALSAAQNK-DY 429 (902)
T ss_dssp CCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGTTBTTBEEEEEEEEEEHHHHHHHHHTTBCC-CC
T ss_pred CCCCCCCcCCCCCceeEEEEcCCCcEEEEECCCCCcccccccCCCcccccCCCeeEEEEEEcCHHHHHHHHhcccCC-CC
Confidence 44 334688888999999999853311000 000 0001112233110 000 01
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEE----EE--ee-----CCCCCeeEEEEecCCCCEEEEE
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVM----TT--FM-----SPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~----~~--~~-----~~~~~i~~l~~s~~~~~~la~g 864 (1101)
.+. +|...+.+++|+||+++||+|+ |++|++||+.++... .. +. +|...|.+++|+| ++++||+|
T Consensus 430 ~l~--G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafsp-dg~~LAsg 506 (902)
T 2oaj_A 430 LLK--GGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAA-ETLELAVS 506 (902)
T ss_dssp SCC--CSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEET-TTTEEEEE
T ss_pred ccc--CCcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecC-CCCeEEEE
Confidence 122 4777788899999999999998 999999999877431 11 11 7888999999999 99999999
Q ss_pred eCCCcEEEEEeecc---------------------------------------------eEEEeeccCCCCeeEEEEcCC
Q 001319 865 TEDSTIHIYNVRVD---------------------------------------------EVKSKLKGHQKRITGLAFSTS 899 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~---------------------------------------------~~~~~~~~h~~~V~~l~~s~d 899 (1101)
+.||+|+||++.++ +++..+.+|.+.|++|+||||
T Consensus 507 s~DgtV~lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpd 586 (902)
T 2oaj_A 507 IETGDVVLFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNI 586 (902)
T ss_dssp ETTSCEEEEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBT
T ss_pred ecCcEEEEEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCC
Confidence 99999999999876 346788899999999999999
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceEEeecC-CCCCCCcceEEEc-----CCC---CEEEEEe-CCeEEEEEc---CC
Q 001319 900 LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-GKTPTGDTRVQFN-----ADQ---VRMLVVH-ETQLAIYDA---SK 966 (1101)
Q Consensus 900 ~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s-----~d~---~~l~~~~-d~~i~v~d~---~~ 966 (1101)
| +||+|+.|++|++||+.++..+....+.... +|. ..|++++|+ ||| .+|++++ |++|++||+ .+
T Consensus 587 G-~lAsgs~D~tv~lwd~~~~~~~~~~~~~~~~~gh~-~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~ 664 (902)
T 2oaj_A 587 G-FVGIAYAAGSLMLIDRRGPAIIYMENIREISGAQS-ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASG 664 (902)
T ss_dssp S-EEEEEETTSEEEEEETTTTEEEEEEEGGGTCSSCC-CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGG
T ss_pred c-EEEEEeCCCcEEEEECCCCeEEEEeehhHhccccc-cceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCC
Confidence 9 9999999999999999886543221222232 555 789999999 886 7888854 999999999 78
Q ss_pred ceeeeEeccCC--CCCCCEEEEE-Ec----------------------cCCCEEEEEeCCCcEEEEeCCCCceeEeeCCC
Q 001319 967 MERIRQWTPQD--ALSAPISCAV-YS----------------------CNSQLVFATFCDGNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 967 ~~~~~~~~~~~--~h~~~v~~v~-~s----------------------~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 1021 (1101)
|+....+..+. .|..+|..++ |+ ++|..|+++ +..|+||++.++++.+....
T Consensus 665 g~~~~~~~~~~~~~~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~l~~~--~~~ir~~~~~~~k~~~k~~~- 741 (902)
T 2oaj_A 665 GKFDVQLMDITNVTSKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPGIVLITG--FDDIRLITLGKSKSTHKGFK- 741 (902)
T ss_dssp GCEEEEEEEEEECCSSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCEEEEEEC--SSEEEEECTTCCCEEEEECS-
T ss_pred CcEEEEecCceecCCCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCeEEEEEe--ccceEEEeCccccceeeEcc-
Confidence 88887776653 2357777776 65 455555544 77899999999988776542
Q ss_pred CcCCCcccCCCCccceEEE---E------EecCCCCEEEEEECCCeEEEEeCCCCC--CccccCCC
Q 001319 1022 TYLSPSVLNGSQTVYPLVV---A------AHPLEPNQFAIGLTDGSVKVMEPSESE--GKWGVSPP 1076 (1101)
Q Consensus 1022 ~~~~~~~~~h~~~~~~~~l---~------~~p~d~~~l~s~~~Dg~v~iWd~~~~~--~~~~~~~~ 1076 (1101)
|. ..+.++ . |++ ++..|++++.||+|++|++.+.+ ...+++++
T Consensus 742 ---------~~--~~~~~v~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~s~p~l~~~~~~~~~~~ 795 (902)
T 2oaj_A 742 ---------YP--LAATGLSYISTVEKNNDRK-NLTVIITLEINGHLRVFTIPDFKEQMSEHIPFP 795 (902)
T ss_dssp ---------SC--EEEEEEEEEEEECSSSCEE-EEEEEEEEETTSEEEEEETTTCCEEEEEECSSC
T ss_pred ---------cc--eeeeEEEEEEecccccccc-CceEEEEEeCCCcEEEEECcchHHHhhccCCcc
Confidence 33 333444 4 567 68899999999999999999999 45555444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-47 Score=475.89 Aligned_cols=557 Identities=13% Similarity=0.159 Sum_probs=422.0
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|.+++|||+|+ ++|+|+.||.|+|||+.+++.+. .+.+|...|.+++|+|+|++
T Consensus 10 ~~h~~~v~~i~~sp~~~-~la~~~~~g~v~iwd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 69 (814)
T 3mkq_A 10 SNRSDRVKGIDFHPTEP-WVLTTLYSGRVEIWNYETQVEVR-------------------SIQVTETPVRAGKFIARKNW 69 (814)
T ss_dssp EEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEGGGTE
T ss_pred ecCCCceEEEEECCCCC-EEEEEeCCCEEEEEECCCCceEE-------------------EEecCCCcEEEEEEeCCCCE
Confidence 45999999999999998 56899999999999999887665 37789999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h~~~v~ 498 (1101)
||+|+.||.|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.|++|++|| .++ .....+.+|...|.
T Consensus 70 l~~~~~dg~i~vw~~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~ 144 (814)
T 3mkq_A 70 IIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVM 144 (814)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEE
T ss_pred EEEEeCCCeEEEEECCCCcEEE---EEecCCCCEEEEEEeCCCC--EEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEE
Confidence 9999999999999999988766 6789999999999999999 799999999999999 555 67788899999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC-CceEEEEEcc--CCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
+++|+|. ++..+++++.||.|++||+........+..+. ..+.+++|+| ++.++++++. ++.|++||..+++
T Consensus 145 ~~~~~p~-~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~ 219 (814)
T 3mkq_A 145 CVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDYQTKS 219 (814)
T ss_dssp EEEEETT-EEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT----TSEEEEEETTTTE
T ss_pred EEEEEcC-CCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC----CCEEEEEECCCCc
Confidence 9999873 45799999999999999998887777666554 7899999999 9999999985 8899999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE-EEEEEcCCcEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL-LAVTTADNGFK 654 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~-l~~~~~d~~i~ 654 (1101)
.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+..+.. .+.+++|+|++.. +++++.++.+.
T Consensus 220 ~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~~~~~~ 296 (814)
T 3mkq_A 220 CVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGLE--RSWCIATHPTGRKNYIASGFDNGFT 296 (814)
T ss_dssp EEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCSEEEEECCSSS--SEEEEEECTTCGGGEEEEEETTEEE
T ss_pred EEEEEcCCCC-CEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEeecCCC--cEEEEEEccCCCceEEEEEeCCCEE
Confidence 9999998876 899999999999999999999999999999999888876644 7999999999873 24444567788
Q ss_pred EEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCc-ceeccCCCCCCceEEEEEEeCCC--eEEEEcC
Q 001319 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANC-KVERSSPVRPSPIILAEIVDSGQ--CRLVTMP 731 (1101)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~ 731 (1101)
+|++.... ..+.++|+++.++.+...... .+....... .+....... .....+
T Consensus 297 ~~~~~~~~------------------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~- 352 (814)
T 3mkq_A 297 VLSLGNDE------------------PTLSLDPVGKLVWSGGKNAAASDIFTAVIRG-----NEEVEQDEPLSLQTKEL- 352 (814)
T ss_dssp EEECSCCS------------------CCEEECSSSEEEEECCTTSCTTCEEEEECCS-----CCCCCSSSCBCCCCEEE-
T ss_pred EEEcCCCC------------------ceeEECCCCCEEEECcccccceeeeeeeccc-----ccccccCccceeeeecC-
Confidence 99876541 234666777666543222210 000000000 000000000 000011
Q ss_pred CCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEE
Q 001319 732 ESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 811 (1101)
Q Consensus 732 ~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 811 (1101)
..+...+.+++|+|+|+.+++++ +|.+.+|++... .. .+.+.+.+++
T Consensus 353 --~~~~~~~~~~~~spdg~~la~~~-~~~~~i~~~~~~-----------------~~-------------~~~~~i~~~~ 399 (814)
T 3mkq_A 353 --GSVDVFPQSLAHSPNGRFVTVVG-DGEYVIYTALAW-----------------RN-------------KAFGKCQDFV 399 (814)
T ss_dssp --CCCSSCCSEEEECTTSSEEEEEE-TTEEEEEETTTT-----------------EE-------------EEEEECSEEE
T ss_pred --CCCccCCceeEECCCCCEEEEec-CCEEEEEECccc-----------------cc-------------cCCCceEEEE
Confidence 23566789999999999888877 899999985311 00 1345678999
Q ss_pred ecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC---CEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 812 LSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN---NIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 812 ~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~---~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
|+|||+++++++ +|.|++|+. +.+|...+.+++|+| ++ .+|++++.|+.|++||+.+++.+..+..|
T Consensus 400 ~spdg~~la~~~~~g~v~l~~~--------~~~~~~~v~~~~~s~-dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~ 470 (814)
T 3mkq_A 400 WGPDSNSYALIDETGQIKYYKN--------FKEVTSWSVPMHSAI-DRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN 470 (814)
T ss_dssp ECTTSSCEEEECTTCCEEEEET--------TEECTTCCCCCSSCC-CEEECSSSEEEEETTEEEEECTTTCCEEEEESSC
T ss_pred EeCCCCeEEEEeCCCcEEEEEC--------CCCccceEEcCCcCc-cceecceEEEEecCCEEEEEECCcCcEEEEEecC
Confidence 999999999997 899999963 355778899999999 77 57888899999999999999999999888
Q ss_pred CCCeeEEEEcCCCCEEEEE------eCCCcEEEEECC---------------CCccccceEEeecCCCCCCCcceEEEcC
Q 001319 888 QKRITGLAFSTSLNILVSS------GADAQLCVWSID---------------TWEKRKSVTIHIPAGKTPTGDTRVQFNA 946 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~------s~Dg~v~lwd~~---------------~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 946 (1101)
.. .++|+|||++|+++ +.++.+.+|--. .+.......+... . ..+.+..|.
T Consensus 471 ~~---~v~~s~dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~i~s~~w~- 542 (814)
T 3mkq_A 471 AK---DVIWSDNGELVMIVNTNSNGDEASGYTLLFNKDAYLEAANNGNIDDSEGVDEAFDVLYEL-S---ESITSGKWV- 542 (814)
T ss_dssp EE---EEEECTTSSEEEEEECCCSSCSCSEEEEEECHHHHHHHHHHTCCBTTTBCTTTEEEEEEE-C---SCCSEEEEE-
T ss_pred CC---EEEEcCCCCEEEEEEcCcccCCceEEEEEechHHhhhhhhccCCccccchhhheeeeeEe-c---cEEEeeEEe-
Confidence 65 89999999999999 666555555421 0000001111110 1 345566665
Q ss_pred CCCEEEEEe-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 947 DQVRMLVVH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 947 d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
+..++... .+.+..+.......+..+ ..++..+.|.+++..++....++.+.+|++..
T Consensus 543 -~~~~i~~t~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~l~~~d~~~~~~~~~l~~ 601 (814)
T 3mkq_A 543 -GDVFIFTTATNRLNYFVGGKTYNLAHY------TKEMYLLGYLARDNKVYLADREVHVYGYEISL 601 (814)
T ss_dssp -TTEEEEECTTSEEEEEETTEEEEEEEC------SSCCEEEEEEGGGTEEEEECTTCCEEEEECCH
T ss_pred -CCEEEEEcCCCeEEEEeCCeeEEEEEC------CccEEEEEEEecCCEEEEEcCCCCEEEEEECc
Confidence 33444433 344444322211122221 45566777889999999999999999999864
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-45 Score=464.73 Aligned_cols=465 Identities=15% Similarity=0.194 Sum_probs=385.7
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+.+.+|.+.|.+++|+|||++||+|+.||.|+|||+.+++.+. .+.+|.+.|++++|+|+++ +|++++.||.|++
T Consensus 7 ~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~~~~~dg~i~v 81 (814)
T 3mkq_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (814)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred eeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEE---EEecCCCcEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3578899999999999999999999999999999999987666 6779999999999999999 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC-CeeeeccCCCCceEEEEEcc-CCCEEEEe
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~-d~~~l~~~ 556 (1101)
|| .+++.+..+.+|.+.|.+++|++ ++.+|++++.||.|++||+++. .....+..+...|.+++|+| ++..++++
T Consensus 82 w~~~~~~~~~~~~~~~~~v~~~~~s~--~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~ 159 (814)
T 3mkq_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (814)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEE
T ss_pred EECCCCcEEEEEecCCCCEEEEEEeC--CCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEE
Confidence 99 89999999999999999999987 5689999999999999999887 55567778889999999999 88899998
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC--CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
+. ++.|++||+.++.....+..+....+..++|+| +++++++++.||.|++||+.+++.+..+..+.. .|.+
T Consensus 160 ~~----dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~--~v~~ 233 (814)
T 3mkq_A 160 CL----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (814)
T ss_dssp ET----TSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECTTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEcCCCC--CEEE
Confidence 85 899999999999888888887756899999999 999999999999999999999999888876644 7999
Q ss_pred eEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCce
Q 001319 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1101)
Q Consensus 635 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1101)
++|+|+++++++++.||.|++||..++ .....+
T Consensus 234 ~~~~~~~~~l~~~~~dg~v~vwd~~~~-~~~~~~---------------------------------------------- 266 (814)
T 3mkq_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY-KVEKTL---------------------------------------------- 266 (814)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC-SEEEEE----------------------------------------------
T ss_pred EEEcCCCCEEEEEeCCCeEEEEECCCC-cEEEEe----------------------------------------------
Confidence 999999999999999999999998765 222111
Q ss_pred EEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccE-EEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccc
Q 001319 715 ILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGL-LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793 (1101)
Q Consensus 715 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l-~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1101)
..+...+.+++|+|++..+ ++++.++.+.+|++..
T Consensus 267 -------------------~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 302 (814)
T 3mkq_A 267 -------------------NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGN------------------------- 302 (814)
T ss_dssp -------------------CCSSSSEEEEEECTTCGGGEEEEEETTEEEEEECSC-------------------------
T ss_pred -------------------ecCCCcEEEEEEccCCCceEEEEEeCCCEEEEEcCC-------------------------
Confidence 2256688999999998754 7777788888887431
Q ss_pred eeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC---eEEE------EECCCceE----EEEeeCCCCCeeEEEEecCCCC
Q 001319 794 MANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG---KISL------FNMMTFKV----MTTFMSPPPASTFLAFHPQDNN 859 (1101)
Q Consensus 794 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg---~i~v------wd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~ 859 (1101)
....+.++|+|+.++++. +. .+.. |++..+.. ...+..+...+.+++|+| +++
T Consensus 303 ------------~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp-dg~ 369 (814)
T 3mkq_A 303 ------------DEPTLSLDPVGKLVWSGGKNAAASDIFTAVIRGNEEVEQDEPLSLQTKELGSVDVFPQSLAHSP-NGR 369 (814)
T ss_dssp ------------CSCCEEECSSSEEEEECCTTSCTTCEEEEECCSCCCCCSSSCBCCCCEEECCCSSCCSEEEECT-TSS
T ss_pred ------------CCceeEECCCCCEEEECcccccceeeeeeecccccccccCccceeeeecCCCCccCCceeEECC-CCC
Confidence 123567889999988875 22 1222 23333322 234455667899999999 999
Q ss_pred EEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCc
Q 001319 860 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 939 (1101)
Q Consensus 860 ~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 939 (1101)
+|++++ ||.+.+|++...... +.+.|.+++|+||++++++++.||.|++|+...+ +. ..+
T Consensus 370 ~la~~~-~~~~~i~~~~~~~~~-----~~~~i~~~~~spdg~~la~~~~~g~v~l~~~~~~-------------~~-~~v 429 (814)
T 3mkq_A 370 FVTVVG-DGEYVIYTALAWRNK-----AFGKCQDFVWGPDSNSYALIDETGQIKYYKNFKE-------------VT-SWS 429 (814)
T ss_dssp EEEEEE-TTEEEEEETTTTEEE-----EEEECSEEEECTTSSCEEEECTTCCEEEEETTEE-------------CT-TCC
T ss_pred EEEEec-CCEEEEEECcccccc-----CCCceEEEEEeCCCCeEEEEeCCCcEEEEECCCC-------------cc-ceE
Confidence 999998 899999997654432 3567899999999999999999999999974332 11 567
Q ss_pred ceEEEcCCC---CEEEE-EeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEE------eCCCcEEEE
Q 001319 940 TRVQFNADQ---VRMLV-VHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT------FCDGNIGVF 1007 (1101)
Q Consensus 940 ~~~~~s~d~---~~l~~-~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~------~~dg~i~vw 1007 (1101)
..+.|+|++ ..|++ +.++.|++||+.+++.+..+..+ . ..++|||||++|+++ +.++.+.+|
T Consensus 430 ~~~~~s~dg~~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~---~---~~v~~s~dg~~la~~~~~~~~~~~~~~~~~ 501 (814)
T 3mkq_A 430 VPMHSAIDRLFSGALLGVKSDGFVYFFDWDNGTLVRRIDVN---A---KDVIWSDNGELVMIVNTNSNGDEASGYTLL 501 (814)
T ss_dssp CCCSSCCCEEECSSSEEEEETTEEEEECTTTCCEEEEESSC---E---EEEEECTTSSEEEEEECCCSSCSCSEEEEE
T ss_pred EcCCcCccceecceEEEEecCCEEEEEECCcCcEEEEEecC---C---CEEEEcCCCCEEEEEEcCcccCCceEEEEE
Confidence 788999998 34444 77999999999999999888765 2 299999999999999 555544444
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=413.44 Aligned_cols=284 Identities=21% Similarity=0.374 Sum_probs=263.7
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|++++|+|+++ ++++|+.||+|+|||+.+++... .+.+|.+.|.+++|+|+|++
T Consensus 105 ~gh~~~V~~~~~~p~~~-~l~s~s~Dg~i~vwd~~~~~~~~-------------------~l~~h~~~V~~v~~~~~~~~ 164 (410)
T 1vyh_C 105 SGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSGKL 164 (410)
T ss_dssp ECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cccCCcEEEEEEcCCCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEeccCCcEEEEEEcCCCCE
Confidence 36889999999999998 56999999999999999887654 37889999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
||+|+.|++|++||+.+++++. .+.+|...|.+++|+|+++ +|++|+.|++|++|| .++.++..+.+|...|.+
T Consensus 165 l~sgs~D~~i~iwd~~~~~~~~---~~~~h~~~V~~v~~~p~~~--~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~ 239 (410)
T 1vyh_C 165 LASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRM 239 (410)
T ss_dssp EEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCEEE
T ss_pred EEEEeCCCeEEEEeCCCCceeE---EEcCCCCCEEEEEEeCCCC--EEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEE
Confidence 9999999999999999987766 6789999999999999999 899999999999999 899999999999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC--------------------CCEEEEeecC
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD--------------------GSRLFSCGTS 559 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d--------------------~~~l~~~~~~ 559 (1101)
+++++ ++.+|++++.|++|++||+.+......+..|...|.+++|+|+ |.++++++.
T Consensus 240 ~~~~~--~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~- 316 (410)
T 1vyh_C 240 VRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR- 316 (410)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEET-
T ss_pred EEECC--CCCEEEEEcCCCeEEEEECCCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeC-
Confidence 99977 6689999999999999999999999999999999999999996 678999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
|+.|++||+.+++++..+.+|.. .+.+++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|
T Consensus 317 ---D~~i~iwd~~~~~~~~~~~~h~~-~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~h~~--~v~~l~~~~ 390 (410)
T 1vyh_C 317 ---DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDFHK 390 (410)
T ss_dssp ---TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEECS
T ss_pred ---CCeEEEEECCCCceEEEEECCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCC--cEEEEEEcC
Confidence 89999999999999999999887 899999999999999999999999999999999888876654 799999999
Q ss_pred CCCEEEEEEcCCcEEEEEc
Q 001319 640 EGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~ 658 (1101)
++.+|++|+.|++|++|+.
T Consensus 391 ~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 391 TAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp SSSCEEEEETTSEEEEEC-
T ss_pred CCCEEEEEeCCCcEEEEeC
Confidence 9999999999999999985
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-40 Score=358.86 Aligned_cols=286 Identities=16% Similarity=0.231 Sum_probs=260.2
Q ss_pred ecCCCcEEEEEEecC----CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 341 LHQGSTVISMDFHPS----HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 341 ~~h~~~V~~v~fspd----g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+|.+.|++++|+|+ ++ +|++|+.|++|+||++.+++.... ..+.+|...|.+++|+|
T Consensus 29 ~~H~~~V~~v~~~~~~~~~~~-~l~tgs~D~~v~vW~~~~~~~~~~-----------------~~l~gh~~~v~~~~~~~ 90 (321)
T 3ow8_A 29 QAHDDAIWSVAWGTNKKENSE-TVVTGSLDDLVKVWKWRDERLDLQ-----------------WSLEGHQLGVVSVDISH 90 (321)
T ss_dssp TSSSSCEEEEEEC-------C-EEEEEETTSCEEEEEEETTEEEEE-----------------EEECCCSSCEEEEEECS
T ss_pred ccCCCcEEEEEEecCCCCCCC-EEEEEcCCCCEEEEECCCCCeeee-----------------eeeccCCCCEEEEEECC
Confidence 359999999999986 44 679999999999999987653221 23789999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
++.++++|+.|++|++||+.+++.+. .+..|...+.+++|+|+++ +|++|+.|+.|++|| .+++....+..|..
T Consensus 91 ~~~~l~s~s~D~~i~lWd~~~~~~~~---~~~~~~~~~~~~~~spdg~--~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~ 165 (321)
T 3ow8_A 91 TLPIAASSSLDAHIRLWDLENGKQIK---SIDAGPVDAWTLAFSPDSQ--YLATGTHVGKVNIFGVESGKKEYSLDTRGK 165 (321)
T ss_dssp SSSEEEEEETTSEEEEEETTTTEEEE---EEECCTTCCCCEEECTTSS--EEEEECTTSEEEEEETTTCSEEEEEECSSS
T ss_pred CCCEEEEEeCCCcEEEEECCCCCEEE---EEeCCCccEEEEEECCCCC--EEEEEcCCCcEEEEEcCCCceeEEecCCCc
Confidence 99999999999999999999988766 6778999999999999999 899999999999999 88999999999999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|.+++|+| ++++|++++.|+.|++||+.+++....+..+...|.+++|+|++++|++++. ++.|++||+.+++
T Consensus 166 ~v~~~~~sp--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~----dg~i~iwd~~~~~ 239 (321)
T 3ow8_A 166 FILSIAYSP--DGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASD----DGYIKIYDVQHAN 239 (321)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECT----TSCEEEEETTTCC
T ss_pred eEEEEEECC--CCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcC----CCeEEEEECCCcc
Confidence 999999987 6689999999999999999999988899999999999999999999999986 8999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
....+.+|.. .+.+++|+|++++|++++.|++|++||+.+++.+..+..+. ..|.+++|+|++++|++++.|+.|++
T Consensus 240 ~~~~~~~h~~-~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~--~~v~~v~~s~~g~~l~s~~~d~~i~v 316 (321)
T 3ow8_A 240 LAGTLSGHAS-WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQ--DQVWGVKYNGNGSKIVSVGDDQEIHI 316 (321)
T ss_dssp EEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred eeEEEcCCCC-ceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCC--CcEEEEEECCCCCEEEEEeCCCeEEE
Confidence 9999999887 89999999999999999999999999999999999887654 47999999999999999999999999
Q ss_pred EEc
Q 001319 656 LAN 658 (1101)
Q Consensus 656 wd~ 658 (1101)
||.
T Consensus 317 wd~ 319 (321)
T 3ow8_A 317 YDC 319 (321)
T ss_dssp EEC
T ss_pred EeC
Confidence 996
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-39 Score=358.64 Aligned_cols=286 Identities=19% Similarity=0.282 Sum_probs=257.6
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|++++|+|||+ +|++|+.||.|+|||+.+++.+. .+..|...|.+++|+|+|++
T Consensus 52 ~gH~~~v~~~~~s~d~~-~l~s~s~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~~~~s~~~~~ 111 (340)
T 1got_B 52 RGHLAKIYAMHWGTDSR-LLLSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAYAPSGNY 111 (340)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTCCEEE-------------------EEECSSSCEEEEEECTTSSE
T ss_pred cCCCCceEEEEECCCCC-EEEEEeCCCcEEEEECCCCCcce-------------------EeecCCccEEEEEECCCCCE
Confidence 45999999999999998 56899999999999999887664 26779999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcc-cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
||+|+.|+.|++||+.+++. ......+.+|.+.|.+++|++++. +++++.|++|++|| .+++++..+.+|.+.|.
T Consensus 112 l~s~~~d~~v~iw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~---l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~ 188 (340)
T 1got_B 112 VACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQ---IVTSSGDTTCALWDIETGQQTTTFTGHTGDVM 188 (340)
T ss_dssp EEEEETTCEEEEEETTTCSBSCEEEEEEECCSSCEEEEEEEETTE---EEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEeCCCeEEEEECccCCCcceeEEEecCCCccEEEEEECCCCc---EEEEECCCcEEEEECCCCcEEEEEcCCCCceE
Confidence 99999999999999987643 233346789999999999999875 88999999999999 88999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+++|+| ++.++++++.|++|++||++++.....+..|...|.+++|+|+++++++++. |+.|++||+.+++.+.
T Consensus 189 ~~~~~~--~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----d~~v~iwd~~~~~~~~ 262 (340)
T 1got_B 189 SLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLRADQELM 262 (340)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTTEEEE
T ss_pred EEEECC--CCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcC----CCcEEEEECCCCcEEE
Confidence 999987 5689999999999999999999999999999999999999999999999986 8999999999998887
Q ss_pred EecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 579 TYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 579 ~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
.+.... ...+.+++|+|+++++++|+.||.|++||+.+++.+..+..|. ..|.+++|+|+|.+|++|+.|+.|++||
T Consensus 263 ~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~--~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 263 TYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHD--NRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCS--SCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCC--CcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 775432 2358899999999999999999999999999999888887664 4899999999999999999999999996
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-39 Score=358.01 Aligned_cols=293 Identities=17% Similarity=0.248 Sum_probs=261.0
Q ss_pred eeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
..+++ +|.+.|++++|+|+|+ +||+|+.||+|+|||..+++... .+..|...|.+++|+
T Consensus 56 ~~~~l~gH~~~V~~~~~s~d~~-~l~s~s~Dg~v~vWd~~~~~~~~-------------------~~~~~~~~v~~~~~s 115 (354)
T 2pbi_B 56 TRRTLKGHGNKVLCMDWCKDKR-RIVSSSQDGKVIVWDSFTTNKEH-------------------AVTMPCTWVMACAYA 115 (354)
T ss_dssp EEEEEECCSSCEEEEEECTTSS-EEEEEETTSEEEEEETTTCCEEE-------------------EEECSSSCCCEEEEC
T ss_pred EEEEecCCCCeEEEEEECCCCC-EEEEEeCCCeEEEEECCCCCcce-------------------EEecCCCCEEEEEEC
Confidence 34444 5999999999999998 56999999999999998877654 256688899999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcc---cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~ 491 (1101)
|+|.+||+|+.|+.|++|++..... ......+.+|.+.|.+++|+|++. .|++++.|++|++|| .+++++..+.
T Consensus 116 p~g~~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~--~l~t~s~D~~v~lwd~~~~~~~~~~~ 193 (354)
T 2pbi_B 116 PSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDM--QILTASGDGTCALWDVESGQLLQSFH 193 (354)
T ss_dssp TTSSEEEEESTTSEEEEEECCCCTTCCSGGGCEEEEECSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CCCCEEEEeeCCCCEEEEEEeccccccccccceeeeccCCcEEEEEEeCCCC--EEEEEeCCCcEEEEeCCCCeEEEEEc
Confidence 9999999999999999999875421 223346779999999999999999 799999999999999 8999999999
Q ss_pred cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
+|...|.++++++.+++.+|++++.||+|++||+++++....+..|...|.+++|+|++.++++++. |+.|++||+
T Consensus 194 ~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D~~v~lwd~ 269 (354)
T 2pbi_B 194 GHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDAFASGSD----DATCRLYDL 269 (354)
T ss_dssp CCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred CCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCeEEEEEeCCCCEEEEEeC----CCeEEEEEC
Confidence 9999999999998877889999999999999999999999899999999999999999999999986 899999999
Q ss_pred CCCeeEEEecccCC-cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 572 SEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+++.+..+..+.. ..+.+++|+|+++++++|+.|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++|+.|
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~l~~h~--~~v~~l~~spdg~~l~sgs~D 347 (354)
T 2pbi_B 270 RADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHE--NRVSTLRVSPDGTAFCSGSWD 347 (354)
T ss_dssp TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCS--SCEEEEEECTTSSCEEEEETT
T ss_pred CCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcEEEEECCCCceEEEEECCC--CcEEEEEECCCCCEEEEEcCC
Confidence 99988877765432 357889999999999999999999999999999888887654 489999999999999999999
Q ss_pred CcEEEEE
Q 001319 651 NGFKILA 657 (1101)
Q Consensus 651 ~~i~iwd 657 (1101)
++|++|+
T Consensus 348 ~~v~vW~ 354 (354)
T 2pbi_B 348 HTLRVWA 354 (354)
T ss_dssp SEEEEEC
T ss_pred CCEEecC
Confidence 9999995
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-39 Score=354.18 Aligned_cols=295 Identities=21% Similarity=0.278 Sum_probs=256.7
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|++++|+|++..+|++|+.|++|++|++......... +...+.+|...|.+++|+|||++
T Consensus 14 ~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~--------------~~~~~~~h~~~v~~~~~s~dg~~ 79 (319)
T 3frx_A 14 EGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGV--------------PVRSFKGHSHIVQDCTLTADGAY 79 (319)
T ss_dssp CCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEE--------------EEEEEECCSSCEEEEEECTTSSE
T ss_pred ccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccc--------------cceEEeCCcccEEEEEECCCCCE
Confidence 3599999999999987457899999999999998754322110 11347899999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v 500 (1101)
|++|+.|++|++||+.+++.+. .+.+|...|.+++|+|++. +|++|+.|++|++||..++++..+.+|...|.++
T Consensus 80 l~s~s~D~~v~~wd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~ 154 (319)
T 3frx_A 80 ALSASWDKTLRLWDVATGETYQ---RFVGHKSDVMSVDIDKKAS--MIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQV 154 (319)
T ss_dssp EEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSC--EEEEEETTSCEEEEETTSCEEEEECCCSSCEEEE
T ss_pred EEEEeCCCEEEEEECCCCCeeE---EEccCCCcEEEEEEcCCCC--EEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEE
Confidence 9999999999999999998766 6889999999999999999 8999999999999998889999999999999999
Q ss_pred ecccCC----CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 501 CPHHKE----NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 501 ~~~~~~----~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
++.|.. ++..+++++.|+.|++||+.+......+..|...|.+++|+|+|++|++++. |+.|++||+.+++.
T Consensus 155 ~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~----dg~i~iwd~~~~~~ 230 (319)
T 3frx_A 155 RVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGK----DGEIMLWNLAAKKA 230 (319)
T ss_dssp EECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEET----TCEEEEEETTTTEE
T ss_pred EEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeC----CCeEEEEECCCCcE
Confidence 998743 3458999999999999999998888888999999999999999999999986 89999999999999
Q ss_pred EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC------CCCCCCeeEEecCCCEEEEEEcC
Q 001319 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG------GLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~------~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
+..+..+. .+.+++|+|++.++++++.+ .+++|++..+..+..+.... +...+.+++|+|+|++|++|+.|
T Consensus 231 ~~~~~~~~--~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~spdg~~l~sg~~D 307 (319)
T 3frx_A 231 MYTLSAQD--EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAWSADGQTLFAGYTD 307 (319)
T ss_dssp EEEEECCS--CEEEEEECSSSSEEEEEETT-EEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEECTTSSEEEEEETT
T ss_pred EEEecCCC--cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcCeeeeccCccccccccCcCcceeEEEECCCCCEEEEeecC
Confidence 99988653 68999999999998887755 59999999887776654321 23457899999999999999999
Q ss_pred CcEEEEEcccc
Q 001319 651 NGFKILANAIG 661 (1101)
Q Consensus 651 ~~i~iwd~~~~ 661 (1101)
+.|++||+.++
T Consensus 308 g~i~vWd~~t~ 318 (319)
T 3frx_A 308 NVIRVWQVMTA 318 (319)
T ss_dssp SCEEEEEEEEC
T ss_pred ceEEEEEEeec
Confidence 99999998754
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.8e-39 Score=348.55 Aligned_cols=289 Identities=17% Similarity=0.292 Sum_probs=251.4
Q ss_pred eEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 338 AVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 338 ~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.+++ +|.+.|++++|||+|+ ++++|+.||.|+|||+.++..+. .+.+|...|.+++|+|
T Consensus 6 ~~~~~~h~~~V~~~~fsp~~~-~l~s~~~dg~v~lWd~~~~~~~~-------------------~~~~~~~~v~~~~~~~ 65 (304)
T 2ynn_A 6 KKTFSNRSDRVKGIDFHPTEP-WVLTTLYSGRVELWNYETQVEVR-------------------SIQVTETPVRAGKFIA 65 (304)
T ss_dssp EEEEEEECSCEEEEEECSSSS-EEEEEETTSEEEEEETTTTEEEE-------------------EEECCSSCEEEEEEEG
T ss_pred EEeecCCCCceEEEEECCCCC-EEEEEcCCCcEEEEECCCCceeE-------------------EeeccCCcEEEEEEeC
Confidence 3344 4999999999999998 56899999999999999887654 3677999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecCC
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHE 494 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h~ 494 (1101)
++++|++|+.|++|++||+.+++.+. .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .++ .....+.+|.
T Consensus 66 ~~~~l~s~s~d~~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~ 140 (304)
T 2ynn_A 66 RKNWIIVGSDDFRIRVFNYNTGEKVV---DFEAHPDYIRSIAVHPTKP--YVLSGSDDLTVKLWNWENNWALEQTFEGHE 140 (304)
T ss_dssp GGTEEEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEEGGGTTEEEEEECCCC
T ss_pred CCCEEEEECCCCEEEEEECCCCcEEE---EEeCCCCcEEEEEEcCCCC--EEEEECCCCeEEEEECCCCcchhhhhcccC
Confidence 99999999999999999999998766 6889999999999999999 899999999999999 655 4557789999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-CCCCceEEEEEcc--CCCEEEEeecCCCCCceEEEEeC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSA--DGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~--d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..|.+++|+|. ++.+|++++.|++|++||+........+. .+...+..+.|+| ++.++++++. |+.|++||+
T Consensus 141 ~~v~~v~~~p~-~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~----D~~i~iWd~ 215 (304)
T 2ynn_A 141 HFVMCVAFNPK-DPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD----DLTIKIWDY 215 (304)
T ss_dssp SCEEEEEECTT-CTTEEEEEETTSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEET----TSEEEEEET
T ss_pred CcEEEEEECCC-CCCEEEEEeCCCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcC----CCeEEEEeC
Confidence 99999999874 45799999999999999998877665554 4456788999987 7789999986 999999999
Q ss_pred CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC--EEEEEEc
Q 001319 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN--LLAVTTA 649 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~--~l~~~~~ 649 (1101)
++++++..+.+|.. .+..++|+|++++|++|+.||+|++||..+++.+..+..+. ..+.+++|+|++. ++++|+.
T Consensus 216 ~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~asg~~ 292 (304)
T 2ynn_A 216 QTKSCVATLEGHMS-NVSFAVFHPTLPIIISGSEDGTLKIWNSSTYKVEKTLNVGL--ERSWCIATHPTGRKNYIASGFD 292 (304)
T ss_dssp TTTEEEEEEECCSS-CEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCSS--SSEEEEEECTTCGGGCEEEEET
T ss_pred CCCccceeeCCCCC-CEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeeccCCC--ccEEEEEECCCCCceEEEEecC
Confidence 99999999999987 89999999999999999999999999999999999887654 3789999999875 5777765
Q ss_pred CCcEEEEEccc
Q 001319 650 DNGFKILANAI 660 (1101)
Q Consensus 650 d~~i~iwd~~~ 660 (1101)
| .+.+|++.+
T Consensus 293 ~-g~~~~~~~~ 302 (304)
T 2ynn_A 293 N-GFTVLSLGN 302 (304)
T ss_dssp T-EEEEEECC-
T ss_pred C-ceEEEEecc
Confidence 5 466777654
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-38 Score=364.07 Aligned_cols=286 Identities=19% Similarity=0.316 Sum_probs=261.4
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|.+.|++++|+|++.+||+|+.||+|+|||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++|
T Consensus 103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~---~l~~h~~~V~~v~~~~~~~--~l~sgs~D~~i~iw 177 (410)
T 1vyh_C 103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFER---TLKGHTDSVQDISFDHSGK--LLASCSADMTIKLW 177 (410)
T ss_dssp EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCE---EECCCSSCEEEEEECTTSS--EEEEEETTSCCCEE
T ss_pred eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEE---EEeccCCcEEEEEEcCCCC--EEEEEeCCCeEEEE
Confidence 377899999999999999999999999999999999998766 7889999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .+++++..+.+|...|.+++|+| ++.+|++++.|++|++||+.++.....+..|...|.++.+++++.++++++.
T Consensus 178 d~~~~~~~~~~~~h~~~V~~v~~~p--~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~- 254 (410)
T 1vyh_C 178 DFQGFECIRTMHGHDHNVSSVSIMP--NGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSN- 254 (410)
T ss_dssp ETTSSCEEECCCCCSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEET-
T ss_pred eCCCCceeEEEcCCCCCEEEEEEeC--CCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcC-
Confidence 9 88889999999999999999988 5679999999999999999999999999999999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC--------------------CCEEEEEeCCCcEEEEECCCCee
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT--------------------QNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~--------------------~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
|+.|++||+.+++....+.+|.. .+.+++|+|+ +.++++|+.|+.|++||+.++..
T Consensus 255 ---D~~v~vwd~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~ 330 (410)
T 1vyh_C 255 ---DQTVRVWVVATKECKAELREHRH-VVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC 330 (410)
T ss_dssp ---TSCEEEEETTTCCEEEEECCCSS-CEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE
T ss_pred ---CCeEEEEECCCCceeeEecCCCc-eEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCce
Confidence 89999999999999999999887 8999999996 67899999999999999999999
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCC
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 699 (1101)
+..+..+.. .|.+++|+|+|++|++++.|+.|++||+.++ .....+
T Consensus 331 ~~~~~~h~~--~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~-~~~~~~------------------------------- 376 (410)
T 1vyh_C 331 LMTLVGHDN--WVRGVLFHSGGKFILSCADDKTLRVWDYKNK-RCMKTL------------------------------- 376 (410)
T ss_dssp EEEEECCSS--CEEEEEECSSSSCEEEEETTTEEEEECCTTS-CCCEEE-------------------------------
T ss_pred EEEEECCCC--cEEEEEEcCCCCEEEEEeCCCeEEEEECCCC-ceEEEE-------------------------------
Confidence 988876644 7999999999999999999999999998765 222221
Q ss_pred CcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 700 NCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
.+|...|.+++|+|++.++++++.||.|++|+.
T Consensus 377 ----------------------------------~~h~~~v~~l~~~~~~~~l~sgs~D~~i~vW~~ 409 (410)
T 1vyh_C 377 ----------------------------------NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 409 (410)
T ss_dssp ----------------------------------ECCSSCEEEEEECSSSSCEEEEETTSEEEEEC-
T ss_pred ----------------------------------cCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEeC
Confidence 237888999999999999999999999999974
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-39 Score=362.90 Aligned_cols=300 Identities=17% Similarity=0.265 Sum_probs=258.7
Q ss_pred ceeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
.+.+++ +|.+.|++++|+|+|++ |++|+.||+|+|||+.+++... .+.+|...|.+++|
T Consensus 57 ~~~~~l~gH~~~V~~~~~sp~~~~-l~s~s~D~~v~iWd~~~~~~~~-------------------~~~~h~~~v~~~~~ 116 (380)
T 3iz6_a 57 VCCRTLQGHSGKVYSLDWTPEKNW-IVSASQDGRLIVWNALTSQKTH-------------------AIKLHCPWVMECAF 116 (380)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSC-EEEEETTSEEEEEETTTTEEEE-------------------EEECCCTTCCCCEE
T ss_pred EEeecccccccEEEEEEEcCCCCE-EEEEeCCCeEEEEECCCCccce-------------------EEecCCCCEEEEEE
Confidence 344444 59999999999999985 6899999999999999887654 37789999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcc----cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSND----LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~----~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
+|+|++||+|+.|+.|++||+.+... ......+.+|.+.|.+++|+|++.. .|++|+.|++|++|| .+++.+..
T Consensus 117 s~~g~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~-~l~s~s~D~~i~~wd~~~~~~~~~ 195 (380)
T 3iz6_a 117 APNGQSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQET-RLITGSGDQTCVLWDVTTGQRISI 195 (380)
T ss_dssp CTTSSEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSS-CEEEECTTSCEEEECTTTCCEEEE
T ss_pred CCCCCEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCC-EEEEECCCCcEEEEEcCCCcEEEE
Confidence 99999999999999999999976431 1223357899999999999998654 699999999999999 88888877
Q ss_pred e-----ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-CCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 490 F-----EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 490 ~-----~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
+ .+|...|.+++|++. ++.++++|+.|++|++||++. ......+.+|...|.+++|+|+++++++++. |
T Consensus 196 ~~~~~~~~h~~~v~~~~~~~~-~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~----D 270 (380)
T 3iz6_a 196 FGSEFPSGHTADVLSLSINSL-NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD----D 270 (380)
T ss_dssp ECCCSSSSCCSCEEEEEECSS-SCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECS----S
T ss_pred eecccCCCCccCeEEEEeecC-CCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcC----C
Confidence 7 679999999999754 557999999999999999984 4666778889999999999999999999986 8
Q ss_pred ceEEEEeCCCCeeEEEecccCC------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc--CCCCCCCCee
Q 001319 564 SFLVEWNESEGTIKRTYAGFRK------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA--EGGLPNLPRL 635 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~--~~~~~~v~~v 635 (1101)
+.|++||+.+++.+..+..+.. ..+.+++|+|+|+++++|+.||.|++||...++.+..+.. .++...|.++
T Consensus 271 ~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l 350 (380)
T 3iz6_a 271 GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCL 350 (380)
T ss_dssp SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEE
T ss_pred CeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEE
Confidence 9999999999999988876533 1378899999999999999999999999999888776632 2345689999
Q ss_pred EEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+|+|+|++|++|+.|++|++|++...
T Consensus 351 ~~s~dg~~l~sgs~D~~i~iW~~~~~ 376 (380)
T 3iz6_a 351 GLSSDGSALCTGSWDKNLKIWAFSGH 376 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEECCSS
T ss_pred EECCCCCEEEEeeCCCCEEEEecCCC
Confidence 99999999999999999999998755
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=346.33 Aligned_cols=287 Identities=14% Similarity=0.274 Sum_probs=257.3
Q ss_pred cccCCccEEEEEEccC----CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceE
Q 001319 402 FKDVPISVSRVAWSPD----GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spd----g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v 477 (1101)
+.+|.+.|.+++|+|+ +++||+|+.|++|+|||+.+++.. ....+.+|...|.+++|++++. ++++++.|++|
T Consensus 28 ~~~H~~~V~~v~~~~~~~~~~~~l~tgs~D~~v~vW~~~~~~~~-~~~~l~gh~~~v~~~~~~~~~~--~l~s~s~D~~i 104 (321)
T 3ow8_A 28 EQAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLD-LQWSLEGHQLGVVSVDISHTLP--IAASSSLDAHI 104 (321)
T ss_dssp TTSSSSCEEEEEEC-------CEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECSSSS--EEEEEETTSEE
T ss_pred cccCCCcEEEEEEecCCCCCCCEEEEEcCCCCEEEEECCCCCee-eeeeeccCCCCEEEEEECCCCC--EEEEEeCCCcE
Confidence 5679999999999985 679999999999999999876532 2235789999999999999999 89999999999
Q ss_pred EEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
++|| .+++++..+..|...+.+++|+| ++++|++++.|+.|++|+++++.....+..+...+.+++|+|+|++|+++
T Consensus 105 ~lWd~~~~~~~~~~~~~~~~~~~~~~sp--dg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg 182 (321)
T 3ow8_A 105 RLWDLENGKQIKSIDAGPVDAWTLAFSP--DSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG 182 (321)
T ss_dssp EEEETTTTEEEEEEECCTTCCCCEEECT--TSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEeCCCccEEEEEECC--CCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEE
Confidence 9999 88999999999999999999987 66899999999999999999999998888888899999999999999999
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
+. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.|+.|++||+.+++....+..+. ..|.+++
T Consensus 183 ~~----dg~i~iwd~~~~~~~~~~~~h~~-~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~ 255 (321)
T 3ow8_A 183 AI----DGIINIFDIATGKLLHTLEGHAM-PIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHA--SWVLNVA 255 (321)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCS--SCEEEEE
T ss_pred cC----CCeEEEEECCCCcEEEEEcccCC-ceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCC--CceEEEE
Confidence 86 89999999999999999999877 89999999999999999999999999999999888887654 4799999
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
|+|++++|++++.|++|++||+.++ ..+..+
T Consensus 256 ~sp~~~~l~s~s~D~~v~iwd~~~~-~~~~~~------------------------------------------------ 286 (321)
T 3ow8_A 256 FCPDDTHFVSSSSDKSVKVWDVGTR-TCVHTF------------------------------------------------ 286 (321)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTTT-EEEEEE------------------------------------------------
T ss_pred ECCCCCEEEEEeCCCcEEEEeCCCC-EEEEEE------------------------------------------------
Confidence 9999999999999999999999766 222222
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
.+|...|.+++|+|++..|++++.||.|++||.
T Consensus 287 -----------------~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vwd~ 319 (321)
T 3ow8_A 287 -----------------FDHQDQVWGVKYNGNGSKIVSVGDDQEIHIYDC 319 (321)
T ss_dssp -----------------CCCSSCEEEEEECTTSSEEEEEETTCCEEEEEC
T ss_pred -----------------cCCCCcEEEEEECCCCCEEEEEeCCCeEEEEeC
Confidence 237788999999999999999999999999985
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.1e-38 Score=347.41 Aligned_cols=286 Identities=15% Similarity=0.218 Sum_probs=256.6
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|.+.|.+++|+|||++||+|+.||+|++||+.+++.+. .+..|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 50 ~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~~~~s~~~~--~l~s~~~d~~v~iw 124 (340)
T 1got_B 50 TLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSIY 124 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECSSSCEEEEEECTTSS--EEEEEETTCEEEEE
T ss_pred eecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcce---EeecCCccEEEEEECCCCC--EEEEEeCCCeEEEE
Confidence 478899999999999999999999999999999999987665 6778999999999999999 89999999999999
Q ss_pred E-cCC----ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 481 E-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 481 d-~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
| .++ +....+.+|.+.|.++.|++ ++ .+++++.|++|++||+.++.....+..|...|.+++|+|+++++++
T Consensus 125 ~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~-~l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 201 (340)
T 1got_B 125 NLKTREGNVRVSRELAGHTGYLSCCRFLD--DN-QIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVS 201 (340)
T ss_dssp ETTTCSBSCEEEEEEECCSSCEEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEE
T ss_pred ECccCCCcceeEEEecCCCccEEEEEECC--CC-cEEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEE
Confidence 9 443 34577889999999999976 33 5889999999999999999999999999999999999999999999
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
++. |+.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+........|.++
T Consensus 202 g~~----d~~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~ 276 (340)
T 1got_B 202 GAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276 (340)
T ss_dssp EET----TSCEEEEETTTCSEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEE
T ss_pred EeC----CCcEEEEECCCCeeEEEEcCCcC-CEEEEEEcCCCCEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEE
Confidence 986 89999999999999999999887 8999999999999999999999999999999888877655555578999
Q ss_pred EEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceE
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (1101)
+|+|+|++|++|+.|+.|++||..++ .....+
T Consensus 277 ~~s~~g~~l~~g~~d~~i~vwd~~~~-~~~~~~----------------------------------------------- 308 (340)
T 1got_B 277 SFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL----------------------------------------------- 308 (340)
T ss_dssp EECTTSSEEEEEETTSEEEEEETTTC-CEEEEE-----------------------------------------------
T ss_pred EECCCCCEEEEECCCCeEEEEEcccC-cEeeEe-----------------------------------------------
Confidence 99999999999999999999998765 111111
Q ss_pred EEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 716 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 716 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|...|.+++|+|+|..|++++.||.|++|+
T Consensus 309 ------------------~~h~~~v~~~~~s~dg~~l~s~s~D~~i~iWd 340 (340)
T 1got_B 309 ------------------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp ------------------ECCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred ------------------ecCCCcEEEEEEcCCCCEEEEEcCCccEEecC
Confidence 23888999999999999999999999999995
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-38 Score=349.45 Aligned_cols=296 Identities=17% Similarity=0.248 Sum_probs=244.5
Q ss_pred ecCCC-cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 341 LHQGS-TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 341 ~~h~~-~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
.+|.+ .|++++|||+|+ +||+|+.|+.|+|||+.++..... .....+|...|.+++|+|||+
T Consensus 12 ~~h~~~~v~~l~~sp~g~-~las~~~D~~i~iw~~~~~~~~~~----------------~~~~~~h~~~v~~~~~sp~g~ 74 (345)
T 3fm0_A 12 PAHPDSRCWFLAWNPAGT-LLASCGGDRRIRIWGTEGDSWICK----------------SVLSEGHQRTVRKVAWSPCGN 74 (345)
T ss_dssp CCSTTSCEEEEEECTTSS-CEEEEETTSCEEEEEEETTEEEEE----------------EEECSSCSSCEEEEEECTTSS
T ss_pred cCCCCCcEEEEEECCCCC-EEEEEcCCCeEEEEEcCCCcceee----------------eeeccccCCcEEEEEECCCCC
Confidence 35877 999999999998 569999999999999987754321 112468999999999999999
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC---ceeEEeecCCc
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKLFNFEGHEA 495 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~---~~~~~~~~h~~ 495 (1101)
+||+|+.|++|++||+.++.. .....+.+|.+.|.+++|+|+++ +|++|+.|++|++|| .++ .++..+.+|..
T Consensus 75 ~l~s~s~D~~v~iw~~~~~~~-~~~~~~~~h~~~v~~v~~sp~~~--~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~ 151 (345)
T 3fm0_A 75 YLASASFDATTCIWKKNQDDF-ECVTTLEGHENEVKSVAWAPSGN--LLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQ 151 (345)
T ss_dssp EEEEEETTSCEEEEEECCC-E-EEEEEECCCSSCEEEEEECTTSS--EEEEEETTSCEEEEEECTTSCEEEEEEECCCCS
T ss_pred EEEEEECCCcEEEEEccCCCe-EEEEEccCCCCCceEEEEeCCCC--EEEEEECCCeEEEEECCCCCCeEEEEEecCcCC
Confidence 999999999999999987642 22336889999999999999999 899999999999999 554 34677889999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
.|.+++|+| ++.+|++++.|++|++||.+... ....+..|...|.+++|+|+|++|++++. |+.|++||...
T Consensus 152 ~v~~~~~~p--~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~----D~~v~iW~~~~ 225 (345)
T 3fm0_A 152 DVKHVVWHP--SQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSD----DRTVRIWRQYL 225 (345)
T ss_dssp CEEEEEECS--SSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEEEEC
T ss_pred CeEEEEECC--CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeC----CCeEEEecccc
Confidence 999999988 56799999999999999998765 34577888999999999999999999986 89999999632
Q ss_pred ---------------CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee----e---EeeccCCCCCC
Q 001319 574 ---------------GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI----L---TSTDAEGGLPN 631 (1101)
Q Consensus 574 ---------------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~----~---~~~~~~~~~~~ 631 (1101)
.+++..+.+.+...+..++|+|++..+++++.|+.|++|+...+.. . ......+|...
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~~~~~~~~h~~~ 305 (345)
T 3fm0_A 226 PGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQD 305 (345)
T ss_dssp TTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCEEEEEEETTSSSSC
T ss_pred CCCCccceeeccCCccceeEEecCCCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeEEEEeeecccccCc
Confidence 2345566665555899999999999999999999999999875421 1 11112244568
Q ss_pred CCeeEEecCC-CEEEEEEcCCcEEEEEccccc
Q 001319 632 LPRLRFSKEG-NLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 632 v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
|.+++|+|++ .+|++++.||.|++|++.++.
T Consensus 306 V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~ 337 (345)
T 3fm0_A 306 VNCVAWNPKEPGLLASCSDDGEVAFWKYQRPE 337 (345)
T ss_dssp EEEEEECSSSTTEEEEEETTSCEEEEEECC--
T ss_pred EeEeEEeCCCceEEEEcCCCCcEEEEEecCCC
Confidence 9999999987 599999999999999998763
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-38 Score=353.38 Aligned_cols=292 Identities=15% Similarity=0.165 Sum_probs=238.1
Q ss_pred cCCCcEEEEEEecCCceEEEEEec------cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
.|...|++|+|||||+ +||+|+. |+.|++|+..++...... .....+|...|.+++|+
T Consensus 40 ~H~~~V~~v~fSpDG~-~las~s~d~~~~wd~~v~~~~~~~~~~~~~~---------------~~~~~~~~~~V~~~~~s 103 (357)
T 4g56_B 40 CMEVQIGAVRYRRDGA-LLLAASSLSSRTWGGSIWVFKDPEGAPNESL---------------CTAGVQTEAGVTDVAWV 103 (357)
T ss_dssp CCCSEEEEEEECSSSC-EEEEEECSSSSSCCEEEEEESSCC---CGGG---------------CSEEEECSSCEEEEEEE
T ss_pred cccCCEEEEEECCCCC-EEEEEcCCCCccccCeEEEEECCCCCcceeE---------------ecccCCCCCCEEEEEEc
Confidence 5899999999999998 5688887 678999988776543311 11245688999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccc-eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQH-SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~-~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
|++++| +++.||+|+|||+.+++..... ....+|.+.|++++|+|+++ +|++|+.|++|++|| .+++++..+.+|
T Consensus 104 ~d~~~l-~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~--~l~sgs~dg~v~iwd~~~~~~~~~~~~h 180 (357)
T 4g56_B 104 SEKGIL-VASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGT--QAVSGGKDFSVKVWDLSQKAVLKSYNAH 180 (357)
T ss_dssp TTTEEE-EEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred CCCCEE-EEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCC
Confidence 998655 5778999999999988764322 23558999999999999999 899999999999999 889999999999
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CCCCceEEEEEccCC-CEEEEeecCCCCCceEEEEe
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd 570 (1101)
...|.+++|+++.+ .++++++.|++|++||+++++....+. .+...+.+++|+|++ .++++++. ++.|++||
T Consensus 181 ~~~v~~v~~s~~~~-~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~----d~~i~~wd 255 (357)
T 4g56_B 181 SSEVNCVAACPGKD-TIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDE----TGNVSLVN 255 (357)
T ss_dssp SSCEEEEEECTTCS-SCEEEEETTSCEEECCTTSSSCBCBCCCTTCCSCEEEEEECTTSTTEEEEEES----SSCEEEEE
T ss_pred CCCEEEEEEccCCC-ceeeeeccCCceEEEECCCCceeeeeeeccccccccchhhhhcccceEEEeec----ccceeEEE
Confidence 99999999987543 478899999999999999887765543 455679999999985 56777764 88999999
Q ss_pred CCCCeeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCCEEEEEE
Q 001319 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTT 648 (1101)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~ 648 (1101)
+.+++.+..+.+|.. .+.+++|+|++ ++|++|+.|++|+|||+.+++.+..+ +|...|++++|+| ++.+|++++
T Consensus 256 ~~~~~~~~~~~~~~~-~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~---~H~~~V~~vafsP~d~~~l~s~s 331 (357)
T 4g56_B 256 IKNPDSAQTSAVHSQ-NITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDL---SHRDFVTGVAWSPLDHSKFTTVG 331 (357)
T ss_dssp SSCGGGCEEECCCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEEC---CCSSCEEEEEECSSSTTEEEEEE
T ss_pred CCCCcEeEEEeccce-eEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEEC---CCCCCEEEEEEeCCCCCEEEEEc
Confidence 999999999999887 89999999987 57889999999999999999887765 3445899999998 899999999
Q ss_pred cCCcEEEEEcccc
Q 001319 649 ADNGFKILANAIG 661 (1101)
Q Consensus 649 ~d~~i~iwd~~~~ 661 (1101)
.|++|++|++...
T Consensus 332 ~Dg~v~iW~~~~~ 344 (357)
T 4g56_B 332 WDHKVLHHHLPSE 344 (357)
T ss_dssp TTSCEEEEECC--
T ss_pred CCCeEEEEECCCC
Confidence 9999999998765
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-38 Score=347.43 Aligned_cols=297 Identities=14% Similarity=0.138 Sum_probs=238.3
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCc-cccccccccCCccEEEEEEccCCCE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSL-PFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.|...|.+++|||||+ +|++++ |+++++||..... |+...... .........|...|.+++|+||+ +
T Consensus 28 ~~~~~v~~~~fs~dG~-~l~~~s-d~~~r~Wd~~~~~---------~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~ 95 (344)
T 4gqb_B 28 CMERQLEAARYRSDGA-LLLGAS-SLSGRCWAGSLWL---------FKDPCAAPNEGFCSAGVQTEAGVADLTWVGER-G 95 (344)
T ss_dssp SCCSEEEEEEECTTSC-EEEEEE-CCSSSCCCEEEEE---------ESSGGGTTCGGGCSEEEEESSCEEEEEEETTT-E
T ss_pred cccCCEEEEEECCCCC-EEEEEe-CCceEEeeceeee---------eccccccCCcceeeeeeccCCCEEEEEEeCCC-e
Confidence 3667899999999998 567665 7889999843211 10000000 00011123467789999999985 6
Q ss_pred EEEEECCCeEEEEeecCCcccccce-eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~-~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
|++|+.||+|+|||+.+++.+.... .+.+|.+.|++++|+|||+ +|++|+.|++|++|| .+++++..+.+|.+.|.
T Consensus 96 l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~--~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~ 173 (344)
T 4gqb_B 96 ILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGT--QAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVT 173 (344)
T ss_dssp EEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEE
T ss_pred EEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCC--EEEEEeCCCeEEEEECCCCcEEEEEcCcCCceE
Confidence 8899999999999999988765332 3568999999999999999 899999999999999 89999999999999999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CCCCceEEEEEccC-CCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
+++|++++. .++++++.|++|++||+++++....+. .+...+.+++|+|+ ++++++++. ++.|++||+++++
T Consensus 174 ~~~~~~~~~-~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~----dg~v~~wd~~~~~ 248 (344)
T 4gqb_B 174 CVAASPHKD-SVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDE----NGTVSLVDTKSTS 248 (344)
T ss_dssp EEEECSSCT-TEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEET----TSEEEEEESCC--
T ss_pred EEEecCCCC-CceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEecc----CCcEEEEECCCCc
Confidence 999987532 588999999999999999988877654 34557899999995 567777775 8999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC-EEEEEEcCCcE
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGF 653 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i 653 (1101)
++..+.+|.. .|.+++|+|++ ++|++|+.|++|++||+.+++++. +. +|...|.+++|+|+++ +|++++.|++|
T Consensus 249 ~~~~~~~h~~-~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~--~H~~~V~~v~~sp~~~~llas~s~D~~v 324 (344)
T 4gqb_B 249 CVLSSAVHSQ-CVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ--AHRDFVRDATWSPLNHSLLTTVGWDHQV 324 (344)
T ss_dssp CCEEEECCSS-CEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC--CCSSCEEEEEECSSSTTEEEEEETTSCE
T ss_pred EEEEEcCCCC-CEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec--CCCCCEEEEEEeCCCCeEEEEEcCCCeE
Confidence 9999999987 89999999998 578899999999999999988654 33 3455899999999886 67789999999
Q ss_pred EEEEcccc
Q 001319 654 KILANAIG 661 (1101)
Q Consensus 654 ~iwd~~~~ 661 (1101)
++|++.+.
T Consensus 325 ~~w~v~~~ 332 (344)
T 4gqb_B 325 VHHVVPTE 332 (344)
T ss_dssp EEEECCC-
T ss_pred EEEECCCC
Confidence 99998764
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-37 Score=358.83 Aligned_cols=327 Identities=14% Similarity=0.197 Sum_probs=266.4
Q ss_pred ccCCccEEEEEEccCCC-EEEEEECCCeEEEEee----cCCcccc---cceeeec----------ccCcEEEEEEecCCC
Q 001319 403 KDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSY----AGSNDLR---QHSQIDA----------HVGAVNDLAFAYPNK 464 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~----~~~~~~~---~~~~l~~----------h~~~V~~l~~s~d~~ 464 (1101)
..|.+.|.+++|+|+|+ +||+|+.|+.|++||+ .+++.+. ....+.. |.+.|++++|+|+++
T Consensus 42 ~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 121 (425)
T 1r5m_A 42 IVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGN 121 (425)
T ss_dssp EEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSS
T ss_pred eeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCC
Confidence 34678999999999999 9999999999999999 8877200 0112222 688999999999999
Q ss_pred ceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCc----
Q 001319 465 LLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHW---- 540 (1101)
Q Consensus 465 ~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~---- 540 (1101)
+|++++.|+.|++||.+++.+..+.+|...|.+++|++ ++.+|++++.|+.|++||+.++.....+..+...
T Consensus 122 --~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~ 197 (425)
T 1r5m_A 122 --SIVTGVENGELRLWNKTGALLNVLNFHRAPIVSVKWNK--DGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSI 197 (425)
T ss_dssp --EEEEEETTSCEEEEETTSCEEEEECCCCSCEEEEEECT--TSSEEEEEETTCCEEEEETTTTEEEEEECCC-------
T ss_pred --EEEEEeCCCeEEEEeCCCCeeeeccCCCccEEEEEECC--CCCEEEEEecCCeEEEEECCCCcEEEEeeccccCccce
Confidence 89999999999999988999999999999999999987 6689999999999999999998888877777666
Q ss_pred -----------eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcE
Q 001319 541 -----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 541 -----------v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1101)
+.+++|++++. +++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.||.|
T Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~g~i~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i 271 (425)
T 1r5m_A 198 NAENHSGDGSLGVDVEWVDDDK-FVIPGP----KGAIFVYQITEKTPTGKLIGHHG-PISVLEFNDTNKLLLSASDDGTL 271 (425)
T ss_dssp --------CCCBSCCEEEETTE-EEEECG----GGCEEEEETTCSSCSEEECCCSS-CEEEEEEETTTTEEEEEETTSCE
T ss_pred eeccccCCcceeeEEEEcCCCE-EEEEcC----CCeEEEEEcCCCceeeeeccCCC-ceEEEEECCCCCEEEEEcCCCEE
Confidence 89999999865 555554 88999999998877777766654 56666666666666666666666
Q ss_pred EEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecc
Q 001319 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 689 (1101)
++||+.+++.+..+.
T Consensus 272 ~i~d~~~~~~~~~~~----------------------------------------------------------------- 286 (425)
T 1r5m_A 272 RIWHGGNGNSQNCFY----------------------------------------------------------------- 286 (425)
T ss_dssp EEECSSSBSCSEEEC-----------------------------------------------------------------
T ss_pred EEEECCCCccceEec-----------------------------------------------------------------
Confidence 666654431100000
Q ss_pred ccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCC
Q 001319 690 SSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 769 (1101)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~ 769 (1101)
T Consensus 287 -------------------------------------------------------------------------------- 286 (425)
T 1r5m_A 287 -------------------------------------------------------------------------------- 286 (425)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCe
Q 001319 770 EQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPAS 848 (1101)
Q Consensus 770 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i 848 (1101)
.|...|.+++|+|++ ++++++ +|.|++||+.+++.+..+..|...|
T Consensus 287 --------------------------------~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i 333 (425)
T 1r5m_A 287 --------------------------------GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGVPI 333 (425)
T ss_dssp --------------------------------CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTCCE
T ss_pred --------------------------------CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCccE
Confidence 155667888888888 776666 8899999999999999999999999
Q ss_pred eEEEEecCCCCEEEEEeCCCcEEEEEeecce--------------------EEEeeccCCC--CeeEEEEcCCCCEEEEE
Q 001319 849 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--------------------VKSKLKGHQK--RITGLAFSTSLNILVSS 906 (1101)
Q Consensus 849 ~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~--------------------~~~~~~~h~~--~V~~l~~s~d~~~l~s~ 906 (1101)
.+++|+| ++++|++++.||.|++||+.+++ .+..+.+|.. .|++++|+|++++|+++
T Consensus 334 ~~~~~s~-~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 412 (425)
T 1r5m_A 334 FAGRISQ-DGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIFDLSWNCAGNKISVA 412 (425)
T ss_dssp EEEEECT-TSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEEEEEECTTSSEEEEE
T ss_pred EEEEEcC-CCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceEEEEccCCCceEEEE
Confidence 9999999 89999999999999999999988 8899999977 99999999999999999
Q ss_pred eCCCcEEEEECC
Q 001319 907 GADAQLCVWSID 918 (1101)
Q Consensus 907 s~Dg~v~lwd~~ 918 (1101)
+.||.|++|++.
T Consensus 413 ~~dg~i~iw~~~ 424 (425)
T 1r5m_A 413 YSLQEGSVVAIP 424 (425)
T ss_dssp ESSSCCEEEECC
T ss_pred ecCceEEEEeec
Confidence 999999999986
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=336.31 Aligned_cols=249 Identities=18% Similarity=0.310 Sum_probs=225.8
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+++.+|.+.|.+++|+|||++||+|+.||+|++||+.+++.++ .+.+|..+|.+++|+|+++ +|++|+.|++|++
T Consensus 7 ~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~s~d~~i~v 81 (304)
T 2ynn_A 7 KTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVR---SIQVTETPVRAGKFIARKN--WIIVGSDDFRIRV 81 (304)
T ss_dssp EEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEEEGGGT--EEEEEETTSEEEE
T ss_pred EeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeE---EeeccCCcEEEEEEeCCCC--EEEEECCCCEEEE
Confidence 3588999999999999999999999999999999999987666 6789999999999999999 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeeccCCCCceEEEEEcc-CCCEEEEe
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDYDAPGHWCTTMLYSA-DGSRLFSC 556 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~~~~~~~v~~~~~s~-d~~~l~~~ 556 (1101)
|| .+++++..+.+|.+.|.+++|+| ++.+|++++.|++|++||+++... ...+..|...|.+++|+| ++.+++++
T Consensus 82 wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sg 159 (304)
T 2ynn_A 82 FNYNTGEKVVDFEAHPDYIRSIAVHP--TKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASG 159 (304)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEE
T ss_pred EECCCCcEEEEEeCCCCcEEEEEEcC--CCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEE
Confidence 99 89999999999999999999987 568999999999999999988744 456788999999999999 67899999
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC--CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
+. |+.|++||+.++.....+..++...+..+.|+| ++.+|++++.|++|++||+++++.+..+..|.. .|.+
T Consensus 160 s~----D~~v~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~--~v~~ 233 (304)
T 2ynn_A 160 CL----DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMS--NVSF 233 (304)
T ss_dssp ET----TSEEEEEETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSS--CEEE
T ss_pred eC----CCeEEEEECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCC--CEEE
Confidence 86 999999999988877777666555788889986 678999999999999999999999999887644 7999
Q ss_pred eEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 635 LRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 635 v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
++|+|++.+|++++.||.|++||..++
T Consensus 234 ~~~~p~~~~l~s~s~Dg~i~iWd~~~~ 260 (304)
T 2ynn_A 234 AVFHPTLPIIISGSEDGTLKIWNSSTY 260 (304)
T ss_dssp EEECSSSSEEEEEETTSCEEEEETTTC
T ss_pred EEECCCCCEEEEEcCCCeEEEEECCCC
Confidence 999999999999999999999998776
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-37 Score=355.15 Aligned_cols=357 Identities=13% Similarity=0.181 Sum_probs=279.7
Q ss_pred eEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEec----CCCce------eccccceeecccccCcccc-ccccccCC
Q 001319 338 AVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL----AMRDR------LVSKPFKIWDMAACSLPFQ-ASIFKDVP 406 (1101)
Q Consensus 338 ~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~----~~~~~------~~~~~~~~~d~~~~~~~~~-~~~~~~h~ 406 (1101)
.....|.+.|++++|+|+|+.+||+|+.||.|+|||+ .+++. ..... .++. .....+|.
T Consensus 39 ~~~~~~~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~ 108 (425)
T 1r5m_A 39 LKEIVKLDNIVSSTWNPLDESILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELR----------HPFALSASSGKTT 108 (425)
T ss_dssp CEEEEECSCCSEEEECSSCTTEEEEEETBTEEEEEEEEEC------CEEEEEEEEEE----------CCCCCC------C
T ss_pred eeeeeccCceEEEEECCCCCcEEEEecCCceEEEEEEecccCCcccccccccccccc----------ccccccccccCCC
Confidence 3344577999999999999834689999999999999 87773 21100 0000 01123478
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~ 485 (1101)
+.|++++|+|+|++||+|+.||.|++|| .+++.+. .+.+|...|.+++|+|+++ +|++++.|+.|++|| .+++
T Consensus 109 ~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~ 182 (425)
T 1r5m_A 109 NQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLN---VLNFHRAPIVSVKWNKDGT--HIISMDVENVTILWNVISGT 182 (425)
T ss_dssp BCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEE---EECCCCSCEEEEEECTTSS--EEEEEETTCCEEEEETTTTE
T ss_pred CceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeee---eccCCCccEEEEEECCCCC--EEEEEecCCeEEEEECCCCc
Confidence 8999999999999999999999999999 5555444 6779999999999999999 799999999999999 8899
Q ss_pred eeEEeecCCcC---------------eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCC
Q 001319 486 KLFNFEGHEAP---------------VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550 (1101)
Q Consensus 486 ~~~~~~~h~~~---------------v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~ 550 (1101)
.+..+..+... +.+++|+++ ..+++++.|+.|++||+.+......+..+...|.+++|+|++
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~ 259 (425)
T 1r5m_A 183 VMQHFELKETGGSSINAENHSGDGSLGVDVEWVDD---DKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTN 259 (425)
T ss_dssp EEEEECCC---------------CCCBSCCEEEET---TEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTT
T ss_pred EEEEeeccccCccceeeccccCCcceeeEEEEcCC---CEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCC
Confidence 99988888877 889999763 368899999999999999998888888899999999999999
Q ss_pred CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCC
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
+++++++. ++.|++||+.+++....+.+|.. .+.+++|+|++ .+++++.|+.|++||+.+++.+..+..+..
T Consensus 260 ~~l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-- 331 (425)
T 1r5m_A 260 KLLLSASD----DGTLRIWHGGNGNSQNCFYGHSQ-SIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIVDGV-- 331 (425)
T ss_dssp TEEEEEET----TSCEEEECSSSBSCSEEECCCSS-CEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEECTTC--
T ss_pred CEEEEEcC----CCEEEEEECCCCccceEecCCCc-cEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecccCCc--
Confidence 99999985 88999999999999999988876 89999999999 999999999999999999999888876544
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
.|.+++|+|++++|++++.||.|++|++.++......+......
T Consensus 332 ~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~------------------------------------ 375 (425)
T 1r5m_A 332 PIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDG------------------------------------ 375 (425)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEECHHHHC-----------------------------------------------
T ss_pred cEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeeccccc------------------------------------
Confidence 79999999999999999999999999998763222222111000
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcc--cEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSS--KVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
.+.......... + ..|.. .|.+++|+|++++|++++.||.|++|++.
T Consensus 376 -----~~~~~~~~~~~~--~---~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 376 -----ILNPLPIPLYAS--Y---QSSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp --------CEECCEEEE--E---CCTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred -----ccCcccchhhhh--h---cCcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 000000011111 1 23544 89999999999999999999999999864
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=332.89 Aligned_cols=286 Identities=18% Similarity=0.292 Sum_probs=253.3
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
.+|.+.|++++|+|+|+ ++|+|+.||.|+||++.+++... .+.+|...|.+++|+|++++
T Consensus 20 ~gh~~~v~~~~~s~~~~-~l~s~~~dg~i~iw~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 79 (312)
T 4ery_A 20 AGHTKAVSSVKFSPNGE-WLASSSADKLIKIWGAYDGKFEK-------------------TISGHKLGISDVAWSSDSNL 79 (312)
T ss_dssp CCCSSCEEEEEECTTSS-EEEEEETTSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECTTSSE
T ss_pred cccCCcEEEEEECCCCC-EEEEeeCCCeEEEEeCCCcccch-------------------hhccCCCceEEEEEcCCCCE
Confidence 45999999999999998 56899999999999998877654 37789999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
|++|+.|+.|++||+.+++.+. .+.+|...|.+++|+|+++ ++++|+.|+.|++|| .+++++..+..|..+|.+
T Consensus 80 l~s~~~d~~i~vwd~~~~~~~~---~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~ 154 (312)
T 4ery_A 80 LVSASDDKTLKIWDVSSGKCLK---TLKGHSNYVFCCNFNPQSN--LIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSA 154 (312)
T ss_dssp EEEEETTSEEEEEETTTCCEEE---EEECCSSCEEEEEECSSSS--EEEEEETTSCEEEEETTTCCEEEEECCCSSCEEE
T ss_pred EEEECCCCEEEEEECCCCcEEE---EEcCCCCCEEEEEEcCCCC--EEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEE
Confidence 9999999999999999988766 6789999999999999999 899999999999999 889999999999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
++|++ ++.++++++.|+.|++||+.+.+....+. .+...+..++|+|+++++++++. ++.|++||+.+++.+.
T Consensus 155 ~~~~~--~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~ 228 (312)
T 4ery_A 155 VHFNR--DGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATL----DNTLKLWDYSKGKCLK 228 (312)
T ss_dssp EEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEET----TTEEEEEETTTTEEEE
T ss_pred EEEcC--CCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcC----CCeEEEEECCCCcEEE
Confidence 99987 66899999999999999999888776554 34557999999999999999986 8999999999999999
Q ss_pred EecccCCcc--eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE--cCCcEE
Q 001319 579 TYAGFRKKS--NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT--ADNGFK 654 (1101)
Q Consensus 579 ~~~~~~~~~--v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~--~d~~i~ 654 (1101)
.+.+|.... +......+++.++++|+.||.|++||+.+++.+..+..+. ..|.+++|+|+++++++++ .|+.|+
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~--~~v~~~~~~p~~~~l~s~~~~~d~~i~ 306 (312)
T 4ery_A 229 TYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHT--DVVISTACHPTENIIASAALENDKTIK 306 (312)
T ss_dssp EECSSCCSSSCCCEEEECSSSCEEEECCTTSCEEEEETTTCCEEEEECCCS--SCEEEEEECSSSSEEEEEECTTTCCEE
T ss_pred EEEecCCceEEEEEEEEeCCCcEEEEECCCCEEEEEECCCchhhhhhhccC--CcEEEEeecCcCCceEEEEccCCccEE
Confidence 998886532 2223334678899999999999999999999998887664 4799999999999999997 699999
Q ss_pred EEEcc
Q 001319 655 ILANA 659 (1101)
Q Consensus 655 iwd~~ 659 (1101)
+|+.+
T Consensus 307 ~W~~d 311 (312)
T 4ery_A 307 LWKSD 311 (312)
T ss_dssp EEECC
T ss_pred EecCC
Confidence 99864
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-37 Score=340.58 Aligned_cols=287 Identities=14% Similarity=0.168 Sum_probs=255.2
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|.+.|.+++|+||+++||+|+.||+|+|||..+++... .+..|...|.+++|+|+|. ++++|+.|+.+++|
T Consensus 59 ~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~---~~~~~~~~v~~~~~sp~g~--~lasg~~d~~i~v~ 133 (354)
T 2pbi_B 59 TLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEH---AVTMPCTWVMACAYAPSGC--AIACGGLDNKCSVY 133 (354)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEE---EEECSSSCCCEEEECTTSS--EEEEESTTSEEEEE
T ss_pred EecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcce---EEecCCCCEEEEEECCCCC--EEEEeeCCCCEEEE
Confidence 478899999999999999999999999999999999887655 5778999999999999999 89999999999999
Q ss_pred E-cCC------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc--CCC
Q 001319 481 E-LSG------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA--DGS 551 (1101)
Q Consensus 481 d-~~~------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~--d~~ 551 (1101)
+ ... .....+.+|.+.|.+++|++ ++..|++++.|++|++||+++++....+..|...|.+++|+| +|+
T Consensus 134 ~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~ 211 (354)
T 2pbi_B 134 PLTFDKNENMAAKKKSVAMHTNYLSACSFTN--SDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGN 211 (354)
T ss_dssp ECCCCTTCCSGGGCEEEEECSSCEEEEEECS--SSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCC
T ss_pred EEeccccccccccceeeeccCCcEEEEEEeC--CCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCC
Confidence 9 322 34567788999999999987 557999999999999999999999999999999999999987 578
Q ss_pred EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
++++++. |+.|++||+++++++..+.+|.. .+.+++|+|++++|++++.|++|++||++.++.+..+..+.....
T Consensus 212 ~l~sgs~----Dg~v~~wd~~~~~~~~~~~~h~~-~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~ 286 (354)
T 2pbi_B 212 TFVSGGC----DKKAMVWDMRSGQCVQAFETHES-DVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286 (354)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred EEEEEeC----CCeEEEEECCCCcEEEEecCCCC-CeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccc
Confidence 9999986 89999999999999999999887 899999999999999999999999999999888777765554456
Q ss_pred CCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCC
Q 001319 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1101)
Q Consensus 632 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 711 (1101)
+.+++|+|+|++|++++.|+.|++||+.++. .+..+
T Consensus 287 ~~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~-~~~~l------------------------------------------- 322 (354)
T 2pbi_B 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGS-RVSIL------------------------------------------- 322 (354)
T ss_dssp EEEEEECTTSSEEEEEETTSCEEEEETTTCS-EEEEE-------------------------------------------
T ss_pred eeEEEEeCCCCEEEEEECCCcEEEEECCCCc-eEEEE-------------------------------------------
Confidence 7899999999999999999999999987652 11111
Q ss_pred CceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 712 SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|...|.+++|+|+|.+|++++.||.|++|+
T Consensus 323 ----------------------~~h~~~v~~l~~spdg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 323 ----------------------FGHENRVSTLRVSPDGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp ----------------------CCCSSCEEEEEECTTSSCEEEEETTSEEEEEC
T ss_pred ----------------------ECCCCcEEEEEECCCCCEEEEEcCCCCEEecC
Confidence 33888999999999999999999999999995
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-37 Score=340.48 Aligned_cols=297 Identities=12% Similarity=0.130 Sum_probs=230.8
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccc-eeeccCCCCCCCCEeEEEec
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL-MANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s 813 (1101)
.+...|.+++|+|||+.+++++ |+++++|+.... .|+...... .........+...|.+++|+
T Consensus 28 ~~~~~v~~~~fs~dG~~l~~~s-d~~~r~Wd~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 91 (344)
T 4gqb_B 28 CMERQLEAARYRSDGALLLGAS-SLSGRCWAGSLW---------------LFKDPCAAPNEGFCSAGVQTEAGVADLTWV 91 (344)
T ss_dssp SCCSEEEEEEECTTSCEEEEEE-CCSSSCCCEEEE---------------EESSGGGTTCGGGCSEEEEESSCEEEEEEE
T ss_pred cccCCEEEEEECCCCCEEEEEe-CCceEEeeceee---------------eeccccccCCcceeeeeeccCCCEEEEEEe
Confidence 4677899999999999776655 778888874211 111100000 00000001256789999999
Q ss_pred CCCCeEEEEcCCeEEEEECCCceEEEE----eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCC
Q 001319 814 KNDSYVMSATGGKISLFNMMTFKVMTT----FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 889 (1101)
Q Consensus 814 ~dg~~la~~~dg~i~vwd~~~~~~~~~----~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~ 889 (1101)
||+.+++.+.||+|+|||+.+++.... +.+|...|++++|+| ++++|++|+.||+|++||+.+++++..+.+|.+
T Consensus 92 ~d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~sp-dg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~ 170 (344)
T 4gqb_B 92 GERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLS-SGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAA 170 (344)
T ss_dssp TTTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCC
Confidence 997655444599999999998875443 458999999999999 999999999999999999999999999999999
Q ss_pred CeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC-CCEEEEEe-CCeEEEEEcCC
Q 001319 890 RITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVVH-ETQLAIYDASK 966 (1101)
Q Consensus 890 ~V~~l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~~-d~~i~v~d~~~ 966 (1101)
.|++++|++++. +|++++.|++|++||+.+++........ .....+.+++|+|+ +.++++++ |+.|++||+.+
T Consensus 171 ~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~----~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~ 246 (344)
T 4gqb_B 171 QVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCS----APGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKS 246 (344)
T ss_dssp CEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC--------CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC
T ss_pred ceEEEEecCCCCCceeeeccccccccccccccceeeeeecc----eeeccceeeeecCCCCcceEEeccCCcEEEEECCC
Confidence 999999999985 7899999999999999998754432211 11246889999995 56677754 89999999999
Q ss_pred ceeeeEeccCCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 967 MERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 967 ~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
++.+..+..| ...|++++|+||| ++|++|+.||+|+|||+.++++.. +. +|.. .+.+++|+|+
T Consensus 247 ~~~~~~~~~h---~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~-~~----------~H~~--~V~~v~~sp~ 310 (344)
T 4gqb_B 247 TSCVLSSAVH---SQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFR-SQ----------AHRD--FVRDATWSPL 310 (344)
T ss_dssp --CCEEEECC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEE-EC----------CCSS--CEEEEEECSS
T ss_pred CcEEEEEcCC---CCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEE-Ec----------CCCC--CEEEEEEeCC
Confidence 9999988765 8999999999998 579999999999999999987653 22 2555 4579999996
Q ss_pred CCCEEEEEECCCeEEEEeCCCCC
Q 001319 1046 EPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1046 d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+..+|++++.||+|++|++.+..
T Consensus 311 ~~~llas~s~D~~v~~w~v~~~~ 333 (344)
T 4gqb_B 311 NHSLLTTVGWDHQVVHHVVPTEP 333 (344)
T ss_dssp STTEEEEEETTSCEEEEECCC--
T ss_pred CCeEEEEEcCCCeEEEEECCCCC
Confidence 66788899999999999998754
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=365.65 Aligned_cols=292 Identities=16% Similarity=0.264 Sum_probs=246.9
Q ss_pred CCCcEEEEEEecCCceEEEEE----------eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVG----------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg----------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
+...|.+++|||+|+.++|+| +.|+.|+|||+.+++.... .....|...|.++
T Consensus 11 ~~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~-----------------~~~~~~~~~v~~~ 73 (416)
T 2pm9_A 11 EFSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKP-----------------IASLQVDSKFNDL 73 (416)
T ss_dssp EEEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSC-----------------SCCCCCSSCEEEE
T ss_pred hhhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcE-----------------EEEEecCCceEEE
Confidence 345899999999998678999 8899999999988763210 0123588999999
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCcc-cccceeeecccCcEEEEEEecC-CCceEEEEecCCceEEEEE-cCCc----
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGR---- 485 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~~~d~~v~iwd-~~~~---- 485 (1101)
+|+|++++||+|+.||.|++||+.+... ......+.+|.+.|++++|+|+ ++ +|++++.|+.|++|| .+++
T Consensus 74 ~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~--~l~s~~~dg~v~iwd~~~~~~~~~ 151 (416)
T 2pm9_A 74 DWSHNNKIIAGALDNGSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAKQDN--VLASGGNNGEIFIWDMNKCTESPS 151 (416)
T ss_dssp EECSSSSCEEEEESSSCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSSSTT--BEEEECSSSCEEBCBTTTTSSCTT
T ss_pred EECCCCCeEEEEccCCeEEEeecccccccccchhhccCCccceEEEEEcCCCCC--EEEEEcCCCeEEEEECCCCccccc
Confidence 9999999999999999999999987211 1123367899999999999999 66 799999999999999 6655
Q ss_pred --ee---EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC------CCceEEEEEccCC-CEE
Q 001319 486 --KL---FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADG-SRL 553 (1101)
Q Consensus 486 --~~---~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~d~-~~l 553 (1101)
.. ..+.+|...|.+++|+++. +.++++++.|+.|++||+++.+....+..+ ...+.+++|+|++ .++
T Consensus 152 ~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l 230 (416)
T 2pm9_A 152 NYTPLTPGQSMSSVDEVISLAWNQSL-AHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRV 230 (416)
T ss_dssp TCCCBCCCCSCCSSCCCCEEEECSSC-TTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEE
T ss_pred cccccccccccCCCCCeeEEEeCCCC-CcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEE
Confidence 32 2346799999999998752 579999999999999999998888877776 6789999999998 577
Q ss_pred EEeecCCCCCc---eEEEEeCCCC-eeEEEec-ccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeeccCC
Q 001319 554 FSCGTSKDGDS---FLVEWNESEG-TIKRTYA-GFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627 (1101)
Q Consensus 554 ~~~~~~~~~~~---~i~iwd~~~~-~~~~~~~-~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~ 627 (1101)
++++. ++ .|++||++++ .....+. +|.. .+.+++|+| ++++|++++.||.|++||+.+++.+..+..+.
T Consensus 231 ~~~~~----d~~~~~i~~~d~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~ 305 (416)
T 2pm9_A 231 ATATG----SDNDPSILIWDLRNANTPLQTLNQGHQK-GILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARG 305 (416)
T ss_dssp EEEEC----CSSSCCCCEEETTSTTSCSBCCCSCCSS-CEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSS
T ss_pred EEEEC----CCCCceEEEEeCCCCCCCcEEeecCccC-ceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCC
Confidence 77764 55 9999999986 6677777 7766 899999999 89999999999999999999999998887664
Q ss_pred CCCCCCeeEEecCC-CEEEEEEcCCcEEEEEcccc
Q 001319 628 GLPNLPRLRFSKEG-NLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 628 ~~~~v~~v~~s~~g-~~l~~~~~d~~i~iwd~~~~ 661 (1101)
. .|.+++|+|++ .+|++++.|+.|++|++.+.
T Consensus 306 ~--~v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~ 338 (416)
T 2pm9_A 306 N--WCFKTKFAPEAPDLFACASFDNKIEVQTLQNL 338 (416)
T ss_dssp S--CCCCEEECTTCTTEEEECCSSSEEEEEESCCC
T ss_pred C--ceEEEEECCCCCCEEEEEecCCcEEEEEccCC
Confidence 4 79999999999 89999999999999999876
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-36 Score=335.58 Aligned_cols=326 Identities=17% Similarity=0.206 Sum_probs=244.4
Q ss_pred eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEee-ccCCCCCCCCeeEEecCCCEEEEEEcCCcE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i 653 (1101)
+++.++.+|....+..++|+|+|++|++|+.|++|++||+.++...... ...++...|.+++|+|+|++|++++.|+.+
T Consensus 6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v 85 (345)
T 3fm0_A 6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT 85 (345)
T ss_dssp EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence 4667788888768999999999999999999999999999887654322 223455689999999999999999999999
Q ss_pred EEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCC
Q 001319 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPES 733 (1101)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 733 (1101)
++|+...+...
T Consensus 86 ~iw~~~~~~~~--------------------------------------------------------------------- 96 (345)
T 3fm0_A 86 CIWKKNQDDFE--------------------------------------------------------------------- 96 (345)
T ss_dssp EEEEECCC-EE---------------------------------------------------------------------
T ss_pred EEEEccCCCeE---------------------------------------------------------------------
Confidence 99997543100
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
. +.. +. +|...|.+++|+
T Consensus 97 ------------------~--------~~~----------------------------------~~--~h~~~v~~v~~s 114 (345)
T 3fm0_A 97 ------------------C--------VTT----------------------------------LE--GHENEVKSVAWA 114 (345)
T ss_dssp ------------------E--------EEE----------------------------------EC--CCSSCEEEEEEC
T ss_pred ------------------E--------EEE----------------------------------cc--CCCCCceEEEEe
Confidence 0 000 00 277788889999
Q ss_pred CCCCeEEEEc-CCeEEEEECCCc---eEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce--EEEeeccC
Q 001319 814 KNDSYVMSAT-GGKISLFNMMTF---KVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VKSKLKGH 887 (1101)
Q Consensus 814 ~dg~~la~~~-dg~i~vwd~~~~---~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~--~~~~~~~h 887 (1101)
|++++|++++ |+.|++||+.++ .++..+.+|...|.+++|+| ++.+|++|+.|++|++||..+++ +...+.+|
T Consensus 115 p~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p-~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h 193 (345)
T 3fm0_A 115 PSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHP-SQELLASASYDDTVKLYREEEDDWVCCATLEGH 193 (345)
T ss_dssp TTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECS-SSSCEEEEETTSCEEEEEEETTEEEEEEEECCC
T ss_pred CCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECC-CCCEEEEEeCCCcEEEEEecCCCEEEEEEecCC
Confidence 9999888887 888999998765 45667888999999999999 89999999999999999999875 45788999
Q ss_pred CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCc
Q 001319 888 QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 967 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~ 967 (1101)
...|++++|+|++++|++++.|++|++|+........ .+.... .+ ...
T Consensus 194 ~~~v~~l~~sp~g~~l~s~s~D~~v~iW~~~~~~~~~-------------~~~~~~-----------~~--------~~~ 241 (345)
T 3fm0_A 194 ESTVWSLAFDPSGQRLASCSDDRTVRIWRQYLPGNEQ-------------GVACSG-----------SD--------PSW 241 (345)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEEEECTTCTT-------------CCCCC----------------------CEE
T ss_pred CCceEEEEECCCCCEEEEEeCCCeEEEeccccCCCCc-------------cceeec-----------cC--------Ccc
Confidence 9999999999999999999999999999964422110 010000 00 011
Q ss_pred eeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCC
Q 001319 968 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1047 (1101)
Q Consensus 968 ~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~ 1047 (1101)
+++..+.. .|...|.+++|++++.+|++++.|+.|++|+...+........ ........+|. ..+.+++|+|+++
T Consensus 242 ~~~~~~~~--~h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~-~~~~~~~~~h~--~~V~~v~~~p~~~ 316 (345)
T 3fm0_A 242 KCICTLSG--FHSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTF-SLTAHLHQAHS--QDVNCVAWNPKEP 316 (345)
T ss_dssp EEEEEECS--SCSSCEEEEEECTTTCCEEEEETTSCEEEEEECTTSCTTSCCE-EEEEEETTSSS--SCEEEEEECSSST
T ss_pred ceeEEecC--CCCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCCCCcceeeE-EEEeeeccccc--CcEeEeEEeCCCc
Confidence 22333333 2488999999999999999999999999999876532100000 00000001244 4567999999655
Q ss_pred CEEEEEECCCeEEEEeCCCCCC
Q 001319 1048 NQFAIGLTDGSVKVMEPSESEG 1069 (1101)
Q Consensus 1048 ~~l~s~~~Dg~v~iWd~~~~~~ 1069 (1101)
.+|++|+.||+|++|++.+.+.
T Consensus 317 ~~laS~s~Dg~v~~W~~~~~~~ 338 (345)
T 3fm0_A 317 GLLASCSDDGEVAFWKYQRPEG 338 (345)
T ss_dssp TEEEEEETTSCEEEEEECC---
T ss_pred eEEEEcCCCCcEEEEEecCCCC
Confidence 7999999999999999998874
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-37 Score=344.19 Aligned_cols=292 Identities=16% Similarity=0.215 Sum_probs=232.0
Q ss_pred CCCcccEEEEEeecCcccEEEeec------CCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeec-cCCCCCCCC
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGS------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND-VAGVNLEEA 806 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~------dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 806 (1101)
..|...|.+++|+|||++|++++. ||.+++|+.. ++...... ....+|...
T Consensus 39 ~~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~----------------------~~~~~~~~~~~~~~~~~~ 96 (357)
T 4g56_B 39 ACMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDP----------------------EGAPNESLCTAGVQTEAG 96 (357)
T ss_dssp -CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSC----------------------C---CGGGCSEEEECSSC
T ss_pred ccccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECC----------------------CCCcceeEecccCCCCCC
Confidence 348899999999999999999987 4556666533 22211000 011137888
Q ss_pred EeEEEecCCCCeEEEEcCCeEEEEECCCceEEE----EeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 807 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMT----TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~----~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
|.+++|+|++++++++.||+|++||+.+++... ...+|...|++++|+| ++++|++|+.||+|++||+.+++.+.
T Consensus 97 V~~~~~s~d~~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~sp-dg~~l~sgs~dg~v~iwd~~~~~~~~ 175 (357)
T 4g56_B 97 VTDVAWVSEKGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFS-DGTQAVSGGKDFSVKVWDLSQKAVLK 175 (357)
T ss_dssp EEEEEEETTTEEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEETTTTEEEE
T ss_pred EEEEEEcCCCCEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECC-CCCEEEEEeCCCeEEEEECCCCcEEE
Confidence 999999999998887779999999998876543 3447899999999999 99999999999999999999999999
Q ss_pred eeccCCCCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCC-CEEEEE-eCCeE
Q 001319 883 KLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQ-VRMLVV-HETQL 959 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~-~~l~~~-~d~~i 959 (1101)
.+.+|...|++++|++++. ++++++.||+|++||+.+++....... ......+.+++|+|++ .+|+++ .|+.|
T Consensus 176 ~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~----~~~~~~v~~v~~sp~~~~~la~g~~d~~i 251 (357)
T 4g56_B 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDF----CASDTIPTSVTWHPEKDDTFACGDETGNV 251 (357)
T ss_dssp EECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCC----TTCCSCEEEEEECTTSTTEEEEEESSSCE
T ss_pred EEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeee----ccccccccchhhhhcccceEEEeecccce
Confidence 9999999999999999875 789999999999999998775543321 1222678999999985 567765 48999
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCC-CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceE
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNS-QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPL 1038 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 1038 (1101)
++||+.+++.+..+..+ ...|++++|+|++ ++|++|+.||+|+|||+++++++..+. |.. .+.
T Consensus 252 ~~wd~~~~~~~~~~~~~---~~~v~~l~~sp~~~~~lasgs~D~~i~iwd~~~~~~~~~~~-----------H~~--~V~ 315 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVH---SQNITGLAYSYHSSPFLASISEDCTVAVLDADFSEVFRDLS-----------HRD--FVT 315 (357)
T ss_dssp EEEESSCGGGCEEECCC---SSCEEEEEECSSSSCCEEEEETTSCEEEECTTSCEEEEECC-----------CSS--CEE
T ss_pred eEEECCCCcEeEEEecc---ceeEEEEEEcCCCCCEEEEEeCCCEEEEEECCCCcEeEECC-----------CCC--CEE
Confidence 99999999999888765 8899999999997 579999999999999999998776543 655 457
Q ss_pred EEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1039 VVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1039 ~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+++|+|.|+.+|+|++.||+|++|++.+..
T Consensus 316 ~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~ 345 (357)
T 4g56_B 316 GVAWSPLDHSKFTTVGWDHKVLHHHLPSEG 345 (357)
T ss_dssp EEEECSSSTTEEEEEETTSCEEEEECC---
T ss_pred EEEEeCCCCCEEEEEcCCCeEEEEECCCCC
Confidence 999999789999999999999999997654
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=345.89 Aligned_cols=308 Identities=17% Similarity=0.249 Sum_probs=248.9
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
+...++|.+.|+|++|||||++ ||+|+ ++.++||++.+++.+.......-. ..............+...|.+++|+|
T Consensus 57 ~~~~~~h~~~V~~v~fspdg~~-la~g~-~~~v~i~~~~~g~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~v~~v~~s~ 133 (393)
T 1erj_A 57 LHKSLDHTSVVCCVKFSNDGEY-LATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFSP 133 (393)
T ss_dssp EEEEEECSSCCCEEEECTTSSE-EEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEECT
T ss_pred eEEecCCCCEEEEEEECCCCCE-EEEEc-CCcEEEEEecCCCEEEEecCcccc-ccccccccccccCCCceeEEEEEECC
Confidence 4456689999999999999994 57775 789999999998876421100000 00000000011123445699999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
||++||+|+.|++|++||+.+++.+. .+.+|...|.+++|+|+++ +|++++.|++|++|| .++++...+. +..
T Consensus 134 dg~~l~s~~~d~~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~p~~~--~l~s~s~d~~v~iwd~~~~~~~~~~~-~~~ 207 (393)
T 1erj_A 134 DGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLS-IED 207 (393)
T ss_dssp TSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEE-CSS
T ss_pred CCCEEEEEcCCCeEEEEECCCCcEEE---EEccCCCCEEEEEEcCCCC--EEEEecCCCcEEEEECCCCeeEEEEE-cCC
Confidence 99999999999999999999987665 6889999999999999999 799999999999999 7888777776 566
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-------cCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
.+.+++|++. ++.+|++++.|+.|++||++++.....+ ..|...|.+++|+|+|+++++++. |+.|++
T Consensus 208 ~v~~~~~~~~-~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~----d~~v~~ 282 (393)
T 1erj_A 208 GVTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVKL 282 (393)
T ss_dssp CEEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEEE
T ss_pred CcEEEEEECC-CCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeC----CCEEEE
Confidence 7999999874 5689999999999999999988776555 467788999999999999999986 899999
Q ss_pred EeCCCC------------eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 569 WNESEG------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 569 wd~~~~------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
||+.+. .+...+.+|.. .+.+++|+|++.+|++|+.|+.|++||..+++.+..+..|.. .|.+++
T Consensus 283 wd~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~h~~--~v~~v~ 359 (393)
T 1erj_A 283 WNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISVA 359 (393)
T ss_dssp EEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEE
T ss_pred EECCCCCCcccccCCCCCcceEEEecccC-cEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEECCCCC--CEEEEE
Confidence 998753 34567778876 789999999999999999999999999999999988876644 799999
Q ss_pred Eec------CCCEEEEEEcCCcEEEEEcccc
Q 001319 637 FSK------EGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 637 ~s~------~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
|++ ++++|++|+.|++|++|++...
T Consensus 360 ~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~~ 390 (393)
T 1erj_A 360 VANGSSLGPEYNVFATGSGDCKARIWKYKKI 390 (393)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEEC
T ss_pred ecCCcCcCCCCCEEEEECCCCcEEECccccc
Confidence 876 6889999999999999998643
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.8e-37 Score=345.59 Aligned_cols=320 Identities=13% Similarity=0.175 Sum_probs=264.1
Q ss_pred eEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE
Q 001319 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL 644 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l 644 (1101)
.+..|+.....+.+++.+|.. .|.+++|+|++++|++|+.||+|++||..+++....+..+.. .|.+++|+|+|++|
T Consensus 47 ~~~~~~~~~~~~~~~l~gH~~-~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~--~v~~~~~s~~g~~l 123 (380)
T 3iz6_a 47 TAVSFNPTDLVCCRTLQGHSG-KVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCP--WVMECAFAPNGQSV 123 (380)
T ss_dssp GCCCCCCCCCEEEEEECCCSS-CEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCT--TCCCCEECTTSSEE
T ss_pred cccccccceeEEeeccccccc-EEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCC--CEEEEEECCCCCEE
Confidence 345578888888999999988 899999999999999999999999999999999988887654 79999999999999
Q ss_pred EEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCC
Q 001319 645 AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQ 724 (1101)
Q Consensus 645 ~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 724 (1101)
++++.|+.+++|++.+.........
T Consensus 124 as~~~d~~v~iw~~~~~~~~~~~~~------------------------------------------------------- 148 (380)
T 3iz6_a 124 ACGGLDSACSIFNLSSQADRDGNMP------------------------------------------------------- 148 (380)
T ss_dssp EECCSSSCCEEEECCCCSSCCCSST-------------------------------------------------------
T ss_pred EEeeCCCcEEEEECCCCccccCCcc-------------------------------------------------------
Confidence 9999999999999865410000000
Q ss_pred eEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCC
Q 001319 725 CRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLE 804 (1101)
Q Consensus 725 ~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 804 (1101)
....+. +|.
T Consensus 149 ---------------------------------------------------------------------~~~~~~--gh~ 157 (380)
T 3iz6_a 149 ---------------------------------------------------------------------VSRVLT--GHK 157 (380)
T ss_dssp ---------------------------------------------------------------------TCCBCC--CCS
T ss_pred ---------------------------------------------------------------------ceeecc--CCC
Confidence 000001 277
Q ss_pred CCEeEEEecCCC-CeEEEEc-CCeEEEEECCCceEEEEe-----eCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee-
Q 001319 805 EAVPCIALSKND-SYVMSAT-GGKISLFNMMTFKVMTTF-----MSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR- 876 (1101)
Q Consensus 805 ~~v~~~~~s~dg-~~la~~~-dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~- 876 (1101)
..+.+++|+|++ ..|++++ |++|++||+.+++.+..+ .+|...|.+++|++.++.+|++|+.||+|++||+.
T Consensus 158 ~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~ 237 (380)
T 3iz6_a 158 GYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRI 237 (380)
T ss_dssp SCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTT
T ss_pred cceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCC
Confidence 778888888864 4678887 899999999999988877 57889999999987688999999999999999997
Q ss_pred cceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecC-CCCCCCcceEEEcCCCCEEEEEe
Q 001319 877 VDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPA-GKTPTGDTRVQFNADQVRMLVVH 955 (1101)
Q Consensus 877 ~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~ 955 (1101)
.++.+..+.+|.+.|++++|+|++++|++++.||+|++||+.+++........... ......+.+++|+|+|.+|+++.
T Consensus 238 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 317 (380)
T 3iz6_a 238 TSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGY 317 (380)
T ss_dssp TCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEEC
T ss_pred CCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEE
Confidence 55778889999999999999999999999999999999999997754433221111 11113589999999999999975
Q ss_pred -CCeEEEEEcCCceeeeEecc-CCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 956 -ETQLAIYDASKMERIRQWTP-QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 956 -d~~i~v~d~~~~~~~~~~~~-~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
|+.|++||..+++.+..+.. ..+|...|++++|+|||++|++|+.||+|+||++...+
T Consensus 318 ~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~ 377 (380)
T 3iz6_a 318 SNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHR 377 (380)
T ss_dssp TTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSS
T ss_pred CCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCc
Confidence 99999999999988877643 24569999999999999999999999999999998654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-36 Score=338.52 Aligned_cols=296 Identities=17% Similarity=0.273 Sum_probs=242.1
Q ss_pred eecCCCcEEEEEE-----ec-CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEE
Q 001319 340 SLHQGSTVISMDF-----HP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1101)
Q Consensus 340 ~~~h~~~V~~v~f-----sp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 413 (1101)
..+|.+.|++++| +| |++ +||+|+.|++|+|||+.+++.... ...+...+.+|...|.+++
T Consensus 17 l~gH~~~V~~~~~~~s~~~~~d~~-~l~sgs~D~~v~iWd~~~~~~~~~------------~~~~~~~l~~h~~~V~~~~ 83 (343)
T 2xzm_R 17 LEGHSDWVTSIVAGFSQKENEDSP-VLISGSRDKTVMIWKLYEEEQNGY------------FGIPHKALTGHNHFVSDLA 83 (343)
T ss_dssp EECCSSCEEEEEECCCSSTTCCCC-EEEEEETTSCEEEEEECSSCCSSB------------SEEEEEEECCCSSCEEEEE
T ss_pred eccchhhhhheeeEEEeecCCCCC-EEEEEcCCCEEEEEECCcCCcccc------------cccccchhccCCCceEEEE
Confidence 3459999999999 77 887 679999999999999976543210 0001235789999999999
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee--
Q 001319 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-- 491 (1101)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-- 491 (1101)
|+|++.+|++|+.|++|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|++|++||..+.......
T Consensus 84 ~~~~~~~l~s~s~D~~v~lwd~~~~~~~~---~~~~h~~~v~~v~~sp~~~--~l~s~~~d~~i~~wd~~~~~~~~~~~~ 158 (343)
T 2xzm_R 84 LSQENCFAISSSWDKTLRLWDLRTGTTYK---RFVGHQSEVYSVAFSPDNR--QILSAGAEREIKLWNILGECKFSSAEK 158 (343)
T ss_dssp ECSSTTEEEEEETTSEEEEEETTSSCEEE---EEECCCSCEEEEEECSSTT--EEEEEETTSCEEEEESSSCEEEECCTT
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCcEEE---EEcCCCCcEEEEEECCCCC--EEEEEcCCCEEEEEeccCCceeeeecc
Confidence 99999999999999999999999988665 6889999999999999999 8999999999999995566555544
Q ss_pred -cCCcCeEEEecccCCC--------ccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 492 -GHEAPVYSICPHHKEN--------IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 492 -~h~~~v~~v~~~~~~~--------~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
+|...|.+++|+|... +.++++++.|++|++||. .......+..|...|.+++|+|+|++|++++.
T Consensus 159 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~h~~~v~~~~~s~~g~~l~sgs~---- 233 (343)
T 2xzm_R 159 ENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYIATGGK---- 233 (343)
T ss_dssp TSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEECCSSCEEEEEECTTSSEEEEEET----
T ss_pred cCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcCccccceEEEECCCCCEEEEEcC----
Confidence 7899999999987532 268999999999999994 45566677888899999999999999999986
Q ss_pred CceEEEEeCC-CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE--eecc---------CCCCC
Q 001319 563 DSFLVEWNES-EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDA---------EGGLP 630 (1101)
Q Consensus 563 ~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~---------~~~~~ 630 (1101)
|+.|++||+. .......+.. . ..+.+++|+|++.+++ ++.|+.|++||+.+++... .+.. .++..
T Consensus 234 dg~v~iwd~~~~~~~~~~~~~-~-~~v~~v~~sp~~~~la-~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFDA-G-STINQIAFNPKLQWVA-VGTDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKGKNP 310 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEEC-S-SCEEEEEECSSSCEEE-EEESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCCSCC
T ss_pred CCeEEEEECCCCcccceeecC-C-CcEEEEEECCCCCEEE-EECCCCEEEEEeCCCCCCceEEeecCcchhhhhhcCCCC
Confidence 9999999994 4444444432 2 2689999999987765 5568889999998776543 3321 13445
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.|.+++|+|+|++|++|+.||.|++|++.++
T Consensus 311 ~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 311 QCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp CEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred ceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7899999999999999999999999998765
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=380.07 Aligned_cols=554 Identities=13% Similarity=0.088 Sum_probs=393.8
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+...+.+.+|||+ ++ |.++. +.|.+|++.+++... +.+|...|.+++|||||++||
T Consensus 13 ~~~~~~~~~~S~~--~i-af~~~-~~l~~~~~~gg~~~~--------------------lt~~~~~v~~~~~SPDG~~la 68 (1045)
T 1k32_A 13 MPNLLLNPDIHGD--RI-IFVCC-DDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIA 68 (1045)
T ss_dssp CCCCCEEEEEETT--EE-EEEET-TEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEE
T ss_pred ccceEeCcEEeCC--EE-EEEEC-CcEEEEECCCCcEEE--------------------eeeCCCcccCeEECCCCCEEE
Confidence 4567899999964 44 55443 689999998876432 677999999999999999999
Q ss_pred EEECC------CeEEEEeecCCcccccceeeecccCcE-------EEEEEecCCCceEEEEecCC------ceEEEEEcC
Q 001319 423 VAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDD------KLIKVWELS 483 (1101)
Q Consensus 423 s~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V-------~~l~~s~d~~~~~l~s~~~d------~~v~iwd~~ 483 (1101)
+++.+ ..|++||+.+++. + .+..|...+ ..++|+|||+ ++++++.+ ..|.+||..
T Consensus 69 ~~s~~~~~~~~~~i~~~d~~~g~~-~---~lt~~~~~~~~~~~~~~~~~~SpDg~--ll~~~~~~~~~~~~~~l~~~~~~ 142 (1045)
T 1k32_A 69 IRVMRGSSLNTADLYFYNGENGEI-K---RITYFSGKSTGRRMFTDVAGFDPDGN--LIISTDAMQPFSSMTCLYRVEND 142 (1045)
T ss_dssp EEEEESTTCCEEEEEEEETTTTEE-E---ECCCCCEEEETTEECSEEEEECTTCC--EEEEECTTSSSTTCCEEEEEEGG
T ss_pred EEEeeccCCCCCeEEEEECCCCCe-E---EcccCCCcccccccccccccCCCCCE--EEEEECCcCCCcccceEEEEECC
Confidence 88653 3799999998763 2 577888888 9999999998 67777754 457788854
Q ss_pred CceeEEeecCCcCeEEEecccCCCccEEEEecc------------CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCC
Q 001319 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI------------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1101)
Q Consensus 484 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~------------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 551 (1101)
+.....+..+. ...++|+| | ++++++. +...++|..........+..+...+.++.|+++ .
T Consensus 143 ~g~~~~l~~~~--~~~~~~sp---G-~l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~d-~ 215 (1045)
T 1k32_A 143 GINFVPLNLGP--ATHILFAD---G-RRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVGH-R 215 (1045)
T ss_dssp GTEEEECCSCS--CSEEEEET---T-EEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEETT-E
T ss_pred CCCeEEecCCC--cceeeeCC---C-EEEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeCC-E
Confidence 44445554443 34566765 4 7777642 345667754444555556788889999999988 4
Q ss_pred EEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC---
Q 001319 552 RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG--- 627 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~--- 627 (1101)
.++++.. ++.+.+|.+.. +.....+..+. .+...+|+|+|++++.+ .++.|++|++..... ..+..+.
T Consensus 216 l~~~~~~----dg~~~l~~~~~~g~~~~~l~~~~--~~~~~~~SpDG~~la~~-~~~~i~~~d~~~~~l-~~l~~~~~~~ 287 (1045)
T 1k32_A 216 IYFITDI----DGFGQIYSTDLDGKDLRKHTSFT--DYYPRHLNTDGRRILFS-KGGSIYIFNPDTEKI-EKIEIGDLES 287 (1045)
T ss_dssp EEEEECT----TSSCEEEEEETTSCSCEECCCCC--SSCEEEEEESSSCEEEE-ETTEEEEECTTTCCE-EECCCCCCCB
T ss_pred EEEEEec----cCceEEEEEeCCCCcceEecCCC--CcceeeEcCCCCEEEEE-eCCEEEEecCCceEe-eeeccCcccc
Confidence 4444432 55666776542 33445555544 35567999999998887 489999999954443 3443321
Q ss_pred ------CCCCCCeeEEe-cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCC
Q 001319 628 ------GLPNLPRLRFS-KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPAN 700 (1101)
Q Consensus 628 ------~~~~v~~v~~s-~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~ 700 (1101)
+...+..++|+ |||+.|++++ ++.+.+|+..++.. . .+
T Consensus 288 ~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~-~-~~-------------------------------- 332 (1045)
T 1k32_A 288 PEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYV-L-KV-------------------------------- 332 (1045)
T ss_dssp CCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBE-E-EC--------------------------------
T ss_pred cccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCce-E-Ec--------------------------------
Confidence 11258899999 9999999888 78899998765511 0 01
Q ss_pred cceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc-cEEEEEeecCcccEEEeecCCeEE-EEEecCCCCCCCCCee
Q 001319 701 CKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS-KVVRLLYTNSAVGLLALGSNGVQK-LWKWHRNEQNPSGKAT 778 (1101)
Q Consensus 701 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~s~~~~~l~~~~~dg~v~-~w~~~~~~~~~~~~~~ 778 (1101)
..+.. .+..++|+ +|+.++.++.++.+. +|+...
T Consensus 333 ---------------------------------~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~---------- 368 (1045)
T 1k32_A 333 ---------------------------------PEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRT---------- 368 (1045)
T ss_dssp ---------------------------------SCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTT----------
T ss_pred ---------------------------------cCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCC----------
Confidence 11334 67788999 999899888876666 666432
Q ss_pred eeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCC
Q 001319 779 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 857 (1101)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 857 (1101)
+.... +. .+...+..++|||||++|++++ ++.|++||+.+++....+..|...+.+++|+| |
T Consensus 369 ------------~~~~~--l~--~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~Sp-D 431 (1045)
T 1k32_A 369 ------------GKAEK--FE--ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISD-N 431 (1045)
T ss_dssp ------------CCEEE--CC--CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECT-T
T ss_pred ------------CCceE--ec--CCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECC-C
Confidence 22111 11 2667899999999999999887 78999999999999888888999999999999 8
Q ss_pred CCEEEEEeCCC----------cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE
Q 001319 858 NNIIAIGTEDS----------TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 858 ~~~la~g~~dg----------~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 927 (1101)
+++|++++.++ .|++||+.+++ ...+..|...+..++|+|||++|++++.++...+|+.......
T Consensus 432 G~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~~~~~---- 506 (1045)
T 1k32_A 432 SRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFS---- 506 (1045)
T ss_dssp SCEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSSCEE----
T ss_pred CCeEEEEecCccccccCCCCCeEEEEECCCCc-EEEeeCCCcccCCceEcCCCCEEEEEecccCCcCcchhccccc----
Confidence 99998887654 89999999888 6777889889999999999999999999999999987643211
Q ss_pred EeecCCCCCCCcceEEEcCCCCEE--EEE--eCCeEEEEEcCCc-eeeeEeccCCCCCCCEEEEEEccCCCEEEE-----
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRM--LVV--HETQLAIYDASKM-ERIRQWTPQDALSAPISCAVYSCNSQLVFA----- 997 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l--~~~--~d~~i~v~d~~~~-~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s----- 997 (1101)
... ...+..+.+++++... +.. .+.....|++... ..+..+..+ ...+..++|+|||+++++
T Consensus 507 --~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~g~~~~~~~l~~~---~~~~~~~~~s~dg~~~~~~~~~g 578 (1045)
T 1k32_A 507 --FEV---VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVD---PGDYRMIIPLESSILIYSVPVHG 578 (1045)
T ss_dssp --CCS---CBEEEEEESSTTCCCGGGCCCGGGSCCCCCCCCTTGGGGCEECSCC---CBCEEEEEECSSEEEEEECCCCC
T ss_pred --ccc---CceeEEEEeCCCCCCccccCcCccccccccccccCHhHceEEcCCC---CCChhheEEcCCCeEEEEecccC
Confidence 000 0223344445444432 211 1111224555432 223333332 678999999999997775
Q ss_pred --------EeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 998 --------TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 998 --------~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
...+..|.+||+.+++..... ..+..++|+| |+..|++++.| .|++||+.+++
T Consensus 579 ~~~~~~~~~~~~~~l~~~d~~~~~~~~l~----------------~~v~~~~~S~-DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 579 EFAAYYQGAPEKGVLLKYDVKTRKVTEVK----------------NNLTDLRLSA-DRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp SHHHHHHCCCCCEEEEEEETTTCCEEEEE----------------EEEEEEEECT-TSCEEEEEETT-SCEEEEESSCT
T ss_pred cccccccccCCCceEEEEECCCCcEEEee----------------cCcceEEECC-CCCEEEEEcCC-cEEEEeCccCc
Confidence 123557889999988754322 1345789999 79999988876 89999998876
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.8e-38 Score=360.95 Aligned_cols=336 Identities=12% Similarity=0.142 Sum_probs=267.3
Q ss_pred CccEEEEEEccCCC-EEEEE----------ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 406 PISVSRVAWSPDGN-YVGVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 406 ~~~v~~~~~spdg~-~las~----------~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
...|.+++|+|||+ +||+| +.|+.|++||+.+++....... ..|...|++++|+|+++ +|++++.|
T Consensus 12 ~~~v~~~~~sp~g~~~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~-~~~~~~v~~~~~s~~~~--~l~~~~~d 88 (416)
T 2pm9_A 12 FSRTATFAWSHDKIPLLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIAS-LQVDSKFNDLDWSHNNK--IIAGALDN 88 (416)
T ss_dssp EEESCBCCBCSSSSCEEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCC-CCCSSCEEEEEECSSSS--CEEEEESS
T ss_pred hhhcceEeeCCCCCCEEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEE-EecCCceEEEEECCCCC--eEEEEccC
Confidence 34788999999997 99999 8899999999998764322222 36899999999999999 79999999
Q ss_pred ceEEEEE-cC----CceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC------eeee---ccCCCCc
Q 001319 475 KLIKVWE-LS----GRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG------SRVD---YDAPGHW 540 (1101)
Q Consensus 475 ~~v~iwd-~~----~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------~~~~---~~~~~~~ 540 (1101)
+.|++|| .+ .+.+..+.+|...|.+++|+++ ++.+|++++.|+.|++||+.+.. .... ...+...
T Consensus 89 g~v~vw~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (416)
T 2pm9_A 89 GSLELYSTNEANNAINSMARFSNHSSSVKTVKFNAK-QDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDE 167 (416)
T ss_dssp SCEEEECCSSTTSCCCEEEECCCSSSCCCEEEECSS-STTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCC
T ss_pred CeEEEeecccccccccchhhccCCccceEEEEEcCC-CCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCC
Confidence 9999999 44 3588899999999999999875 25799999999999999998876 3332 2456667
Q ss_pred eEEEEEccC-CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 541 CTTMLYSAD-GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 541 v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
|.+++|+|+ +.++++++. ++.|++||+.+++.+..+..+...
T Consensus 168 v~~~~~~~~~~~~l~~~~~----dg~v~iwd~~~~~~~~~~~~~~~~--------------------------------- 210 (416)
T 2pm9_A 168 VISLAWNQSLAHVFASAGS----SNFASIWDLKAKKEVIHLSYTSPN--------------------------------- 210 (416)
T ss_dssp CCEEEECSSCTTEEEEESS----SSCEEEEETTTTEEEEEECCCCCS---------------------------------
T ss_pred eeEEEeCCCCCcEEEEEcC----CCCEEEEECCCCCcceEEeccccc---------------------------------
Confidence 888888888 567777664 677777877777666655543220
Q ss_pred eEeeccCCCCCCCCeeEEecCC-CEEEEEEcCC---cEEEEEccccccccccccCCCcccccCcceeeeeeecccccccc
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEG-NLLAVTTADN---GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g-~~l~~~~~d~---~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 695 (1101)
.++...|.+++|+|++ .++++++.|+ .|++||+.++......+.
T Consensus 211 ------~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~-------------------------- 258 (416)
T 2pm9_A 211 ------SGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLN-------------------------- 258 (416)
T ss_dssp ------SCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCC--------------------------
T ss_pred ------cccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEee--------------------------
Confidence 1113467888888886 5888888888 899998865411111000
Q ss_pred CCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCC
Q 001319 696 GTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 775 (1101)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~ 775 (1101)
T Consensus 259 -------------------------------------------------------------------------------- 258 (416)
T 2pm9_A 259 -------------------------------------------------------------------------------- 258 (416)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEE
Q 001319 776 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAF 853 (1101)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~ 853 (1101)
.+|...|.+++|+| ++++|++++ ||.|++||+.+++.+..+..|...|.+++|
T Consensus 259 -------------------------~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~ 313 (416)
T 2pm9_A 259 -------------------------QGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKF 313 (416)
T ss_dssp -------------------------SCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEE
T ss_pred -------------------------cCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEE
Confidence 01677899999999 899999988 899999999999999999999999999999
Q ss_pred ecCCC-CEEEEEeCCCcEEEEEeecceEEEeec-----------------------------------cCCCCeeEEEEc
Q 001319 854 HPQDN-NIIAIGTEDSTIHIYNVRVDEVKSKLK-----------------------------------GHQKRITGLAFS 897 (1101)
Q Consensus 854 s~~~~-~~la~g~~dg~v~iwd~~~~~~~~~~~-----------------------------------~h~~~V~~l~~s 897 (1101)
+| ++ .+|++++.||.|++|++.+++...... .|..++.+++|+
T Consensus 314 s~-~~~~~l~s~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 392 (416)
T 2pm9_A 314 AP-EAPDLFACASFDNKIEVQTLQNLTNTLDEQETETKQQESETDFWNNVSREESKEKPSVFHLQAPTWYGEPSPAAHWA 392 (416)
T ss_dssp CT-TCTTEEEECCSSSEEEEEESCCCCCSSCC----------------------CCSCCCSSCCCCCSTTCCCSCCCEEE
T ss_pred CC-CCCCEEEEEecCCcEEEEEccCCCCCcccccccccccCCcccccccccccccccccccccccCCccccCCccceEEe
Confidence 99 66 899999999999999998765332211 167788899999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCC
Q 001319 898 TSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
|||++|++++.|++|+||++.+.
T Consensus 393 ~dg~~la~~~~d~~v~~w~~~~~ 415 (416)
T 2pm9_A 393 FGGKLVQITPDGKGVSITNPKIS 415 (416)
T ss_dssp TTTEEECBCTTSSCBCCBCCCCC
T ss_pred eCCeEEEEeCCCCeEEEEEeccC
Confidence 99999999999999999999873
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=334.86 Aligned_cols=290 Identities=16% Similarity=0.217 Sum_probs=229.0
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccc-c-cCCccEEEEEEccCC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-K-DVPISVSRVAWSPDG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~-~h~~~v~~~~~spdg 418 (1101)
.+|.+.|++++|+|+ +||+|+.|+.|+|||+.++.... . ..+ . +|...|.+++|+|++
T Consensus 11 ~~h~~~v~~~~~s~~---~las~~~D~~i~lw~~~~~~~~~----------------~-~~~~~~~h~~~v~~v~~sp~~ 70 (330)
T 2hes_X 11 KLYKEKIWSFDFSQG---ILATGSTDRKIKLVSVKYDDFTL----------------I-DVLDETAHKKAIRSVAWRPHT 70 (330)
T ss_dssp ECCSSCEEEEEEETT---EEEEEESSSCEEEEECSSSCCEE----------------E-EEECTTCCCSCEEEEEECTTS
T ss_pred ccCCCceeeeccCCC---EEEEEcCCCEEEEEEecCCCeEE----------------E-EEEecCCccCCEEEEEECCCC
Confidence 459999999999998 57999999999999998753211 0 113 3 499999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCc----ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc-CC----ceeEE
Q 001319 419 NYVGVAFTKHLIQLYSYAGSN----DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SG----RKLFN 489 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~----~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~-~~----~~~~~ 489 (1101)
++||+|+.|++|+|||+.... .......+.+|.+.|++++|+|+++ +|++|+.|++|++||. .+ +++..
T Consensus 71 ~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~--~las~s~D~~v~iwd~~~~~~~~~~~~~ 148 (330)
T 2hes_X 71 SLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGY--YLATCSRDKSVWIWETDESGEEYECISV 148 (330)
T ss_dssp SEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSC--EEEEEETTSCEEEEECCTTCCCCEEEEE
T ss_pred CEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCC--EEEEEeCCCEEEEEeccCCCCCeEEEEE
Confidence 999999999999999996432 1223346789999999999999999 8999999999999994 32 45678
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC--CeeeeccCCCCceEEEEEccC--CCEEEEeecCCCCCce
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM--GSRVDYDAPGHWCTTMLYSAD--GSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~--~~~~~~~~~~~~v~~~~~s~d--~~~l~~~~~~~~~~~~ 565 (1101)
+.+|...|.+++|+| ++.+|++++.|++|++||.... .....+.+|...|.+++|+|+ +.++++++. |+.
T Consensus 149 ~~~h~~~v~~v~~~p--~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~----D~~ 222 (330)
T 2hes_X 149 LQEHSQDVKHVIWHP--SEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCSGSD----DST 222 (330)
T ss_dssp ECCCSSCEEEEEECS--SSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEEEET----TSC
T ss_pred eccCCCceEEEEECC--CCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEEEeC----CCe
Confidence 899999999999988 5689999999999999998766 456778889999999999999 778999886 899
Q ss_pred EEEEeCCCC--------eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee--eEeeccCCCCC-CCCe
Q 001319 566 LVEWNESEG--------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI--LTSTDAEGGLP-NLPR 634 (1101)
Q Consensus 566 i~iwd~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~~~~~-~v~~ 634 (1101)
|++||+..+ .....+.+.+...+.+++|++++ .|++++.||.|++||..+++. .... ...+.. .|.+
T Consensus 223 v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~~~~~~~~~-~~~h~~~~v~~ 300 (330)
T 2hes_X 223 VRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNG-LIASVGADGVLAVYEEVDGEWKVFAKR-ALCHGVYEINV 300 (330)
T ss_dssp EEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTS-CEEEEETTSCEEEEEEETTEEEEEEEE-SCTTTTSCEEE
T ss_pred EEEEEecCCCccccceeEEeeecccccccceEEEEEcCCC-EEEEEeCCCEEEEEEcCCCceEEEecc-ccccccceEEE
Confidence 999998764 44555655334489999999764 899999999999999987742 2222 123333 6899
Q ss_pred eEEec--CCCEEEEEEcCCcEEEEEccc
Q 001319 635 LRFSK--EGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 635 v~~s~--~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
++|+| ++++|++++.||+|++|++..
T Consensus 301 v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 301 VKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999 789999999999999999864
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-36 Score=329.73 Aligned_cols=296 Identities=18% Similarity=0.284 Sum_probs=251.8
Q ss_pred ccccCCccEEEEEEccCC-CEEEEEECCCeEEEEeecCCccc--ccceeeecccCcEEEEEEecCCCceEEEEecCCceE
Q 001319 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v 477 (1101)
++.+|.+.|.+++|+|++ ++|++|+.|++|++||+.+.... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 12 ~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~--~l~s~s~D~~v 89 (319)
T 3frx_A 12 TLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGA--YALSASWDKTL 89 (319)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred EEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCC--EEEEEeCCCEE
Confidence 588999999999999965 89999999999999999754321 22346889999999999999999 89999999999
Q ss_pred EEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccC------C
Q 001319 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSAD------G 550 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d------~ 550 (1101)
++|| .+++++..+.+|...|.+++|++ ++.+|++++.|++|++||++ ......+..|...|.++.++|. +
T Consensus 90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 166 (319)
T 3frx_A 90 RLWDVATGETYQRFVGHKSDVMSVDIDK--KASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVRVVPNEKADDDS 166 (319)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSCEEEEEETTSCEEEEETT-SCEEEEECCCSSCEEEEEECCC------C
T ss_pred EEEECCCCCeeEEEccCCCcEEEEEEcC--CCCEEEEEeCCCeEEEEECC-CCeEEEEeccCCcEEEEEEccCCCCCCCc
Confidence 9999 89999999999999999999987 56899999999999999986 4566677888899999999985 4
Q ss_pred CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCC
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
..+++++. ++.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+ .
T Consensus 167 ~~l~s~~~----d~~i~~wd~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~~~dg~i~iwd~~~~~~~~~~~~~---~ 238 (319)
T 3frx_A 167 VTIISAGN----DKMVKAWNLNQFQIEADFIGHNS-NINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLSAQ---D 238 (319)
T ss_dssp CEEEEEET----TSCEEEEETTTTEEEEEECCCCS-CEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEECC---S
T ss_pred cEEEEEeC----CCEEEEEECCcchhheeecCCCC-cEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCC---C
Confidence 48888885 89999999999999999999887 8999999999999999999999999999999998888754 3
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
.|.+++|+|++.+|++++.+ .+++|++... .....+.....
T Consensus 239 ~v~~~~~sp~~~~la~~~~~-~i~v~~~~~~-~~~~~~~~~~~------------------------------------- 279 (319)
T 3frx_A 239 EVFSLAFSPNRYWLAAATAT-GIKVFSLDPQ-YLVDDLRPEFA------------------------------------- 279 (319)
T ss_dssp CEEEEEECSSSSEEEEEETT-EEEEEEETTE-EEEEEECCCCT-------------------------------------
T ss_pred cEEEEEEcCCCCEEEEEcCC-CcEEEEeCcC-eeeeccCcccc-------------------------------------
Confidence 68999999999999988765 5999998755 22221111000
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecC
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~ 768 (1101)
.....+...+.+++|+|+|++|++++.||.|++|++.+
T Consensus 280 --------------------~~~~~~~~~v~~~~~spdg~~l~sg~~Dg~i~vWd~~t 317 (319)
T 3frx_A 280 --------------------GYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMT 317 (319)
T ss_dssp --------------------TCCGGGCCCEEEEEECTTSSEEEEEETTSCEEEEEEEE
T ss_pred --------------------ccccCcCcceeEEEECCCCCEEEEeecCceEEEEEEee
Confidence 00022566789999999999999999999999999753
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-36 Score=334.22 Aligned_cols=299 Identities=22% Similarity=0.307 Sum_probs=256.2
Q ss_pred eeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 337 VAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 337 ~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
+..+| +|.+.|++|+|+|++..+||||+.|++|+|||+.+++.... .+...+.+|...|.+++|+
T Consensus 30 l~~tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~--------------~~~~~l~~h~~~V~~~~~s 95 (340)
T 4aow_A 30 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYG--------------IPQRALRGHSHFVSDVVIS 95 (340)
T ss_dssp EEEEECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSE--------------EEEEEECCCSSCEEEEEEC
T ss_pred EEEEECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccc--------------eeeEEEeCCCCCEEEEEEC
Confidence 33444 59999999999998544789999999999999987654321 1223578999999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGH 493 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h 493 (1101)
|||++|++|+.|+.|++|+...+.... ....+...+..+.+++++. +|++++.|+.+++|| ... .......+|
T Consensus 96 ~dg~~l~s~~~d~~i~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~l~s~s~d~~~~~~d~~~~~~~~~~~~~~ 170 (340)
T 4aow_A 96 SDGQFALSGSWDGTLRLWDLTTGTTTR---RFVGHTKDVLSVAFSSDNR--QIVSGSRDKTIKLWNTLGVCKYTVQDESH 170 (340)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSSC
T ss_pred CCCCEEEEEcccccceEEeecccceee---eecCCCCceeEEEEeecCc--cceeecCCCeEEEEEeCCCceEEEEeccc
Confidence 999999999999999999999876555 5667888999999999999 799999999999999 333 334556789
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
...+..++|++.+...++++++.|+.|++||+.+......+..|...|.+++|+|++++|++++. |+.|++||+.+
T Consensus 171 ~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~----Dg~i~iwd~~~ 246 (340)
T 4aow_A 171 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGK----DGQAMLWDLNE 246 (340)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TCEEEEEETTT
T ss_pred cCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeC----CCeEEEEEecc
Confidence 99999999998877788999999999999999999999999999999999999999999999986 89999999999
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc-------CCCCCCCCeeEEecCCCEEEE
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA-------EGGLPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-------~~~~~~v~~v~~s~~g~~l~~ 646 (1101)
++.+..+..+. .+..++|+|++ .+++++.|+.|++||++++..+..+.. ..+...|.+++|+|+|++|++
T Consensus 247 ~~~~~~~~~~~--~v~~~~~~~~~-~~~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~s 323 (340)
T 4aow_A 247 GKHLYTLDGGD--IINALCFSPNR-YWLCAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFA 323 (340)
T ss_dssp TEEEEEEECSS--CEEEEEECSSS-SEEEEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEE
T ss_pred CceeeeecCCc--eEEeeecCCCC-ceeeccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEE
Confidence 99999888754 68899999986 556677899999999999887766542 234568999999999999999
Q ss_pred EEcCCcEEEEEcccc
Q 001319 647 TTADNGFKILANAIG 661 (1101)
Q Consensus 647 ~~~d~~i~iwd~~~~ 661 (1101)
|+.||.|++||+.+|
T Consensus 324 gs~Dg~v~iW~~~tG 338 (340)
T 4aow_A 324 GYTDNLVRVWQVTIG 338 (340)
T ss_dssp EETTSCEEEEEEEC-
T ss_pred EeCCCEEEEEeCCCc
Confidence 999999999999887
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-35 Score=325.96 Aligned_cols=289 Identities=20% Similarity=0.312 Sum_probs=255.7
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
.+.+|...|.+++|+|+|++||+|+.||.|++|++.+++... .+.+|...|.+++|+|+++ +|++|+.|+.|++|
T Consensus 18 ~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~d~~i~vw 92 (312)
T 4ery_A 18 TLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEK---TISGHKLGISDVAWSSDSN--LLVSASDDKTLKIW 92 (312)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEE
T ss_pred EEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccch---hhccCCCceEEEEEcCCCC--EEEEECCCCEEEEE
Confidence 578999999999999999999999999999999999887665 6789999999999999999 89999999999999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
| .+++++..+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+....+..+...|.+++|+|+++++++++.
T Consensus 93 d~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~- 169 (312)
T 4ery_A 93 DVSSGKCLKTLKGHSNYVFCCNFNP--QSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSY- 169 (312)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEECS--SSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET-
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEcC--CCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeC-
Confidence 9 88999999999999999999987 5689999999999999999999988888889999999999999999999986
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe-
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS- 638 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s- 638 (1101)
++.|++||+.+++.+..+.......+..++|+|+++++++++.||.|++||+.+++.+..+..+..........++
T Consensus 170 ---d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (312)
T 4ery_A 170 ---DGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIFANFSV 246 (312)
T ss_dssp ---TSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECSSCCSSSCCCEEEEC
T ss_pred ---CCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEEecCCceEEEEEEEEe
Confidence 8899999999999888887666667899999999999999999999999999999998888766543233334444
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
+++.+|++++.||.|++||+.++ ..+..+
T Consensus 247 ~~~~~l~sg~~dg~i~vwd~~~~-~~~~~~-------------------------------------------------- 275 (312)
T 4ery_A 247 TGGKWIVSGSEDNLVYIWNLQTK-EIVQKL-------------------------------------------------- 275 (312)
T ss_dssp SSSCEEEECCTTSCEEEEETTTC-CEEEEE--------------------------------------------------
T ss_pred CCCcEEEEECCCCEEEEEECCCc-hhhhhh--------------------------------------------------
Confidence 57889999999999999998766 222222
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee--cCCeEEEEEe
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG--SNGVQKLWKW 766 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~--~dg~v~~w~~ 766 (1101)
.+|...|.+++|+|++..+++++ .|+.|++|+.
T Consensus 276 ---------------~~h~~~v~~~~~~p~~~~l~s~~~~~d~~i~~W~~ 310 (312)
T 4ery_A 276 ---------------QGHTDVVISTACHPTENIIASAALENDKTIKLWKS 310 (312)
T ss_dssp ---------------CCCSSCEEEEEECSSSSEEEEEECTTTCCEEEEEC
T ss_pred ---------------hccCCcEEEEeecCcCCceEEEEccCCccEEEecC
Confidence 23778899999999999999886 6899999975
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-36 Score=333.05 Aligned_cols=323 Identities=13% Similarity=0.143 Sum_probs=273.3
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
|.+.|.+++|||||+. ++++..++.+.+|......... ...+|...|.+++|+|++++|+
T Consensus 8 ~~~~v~~~~~s~dg~~-~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~l~ 67 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQM-QPVPFPPDALIGPGIPRHARQI-------------------NTLNHGEVVCAVTISNPTRHVY 67 (337)
T ss_dssp EEEECCEEEECSSSCE-EECCCCTTSSSSTTCCSEEEEE-------------------EEECCSSCCCEEEECSSSSEEE
T ss_pred cCCceeEEEECCCCCE-EEeecCCCcEeccccCCccccc-------------------eeccCCCceEEEEEecCCcEEE
Confidence 5678999999999995 5666666666666544332221 1447999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeee--cccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc--eeEEeecCCcCe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQID--AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPV 497 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~--~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~--~~~~~~~h~~~v 497 (1101)
+++ ||.|++||+.+++.......+. +|...|.+++|+|+++ ++++++.|+.|++|| .+++ ....+.+|...|
T Consensus 68 ~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i 144 (337)
T 1gxr_A 68 TGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGC--TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPAC 144 (337)
T ss_dssp EEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSS--EEEEEESSSEEEEEECCCC--EEEEEEECSSSCE
T ss_pred EcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCC--EEEEEcCCCcEEEEECCCCCcceeeecccCCCce
Confidence 998 9999999999887665544454 7999999999999999 899999999999999 6665 567788999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|+++++++++. ++.|++||+.+++.+
T Consensus 145 ~~~~~~~--~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~~~d~~~~~~~ 218 (337)
T 1gxr_A 145 YALAISP--DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGL----DNTVRSWDLREGRQL 218 (337)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSEEEEEETTTTEEE
T ss_pred EEEEECC--CCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEec----CCcEEEEECCCCceE
Confidence 9999987 5689999999999999999999888888889999999999999999999985 899999999999988
Q ss_pred EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
..+.. . ..+..++|+|+++++++++.++.|++||+.+++... +.. +...|.+++|+|++++|++++.||.|++|+
T Consensus 219 ~~~~~-~-~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~-~~~--~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~ 293 (337)
T 1gxr_A 219 QQHDF-T-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQ-LHL--HESCVLSLKFAYCGKWFVSTGKDNLLNAWR 293 (337)
T ss_dssp EEEEC-S-SCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEE-ECC--CSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred eeecC-C-CceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEE-EcC--CccceeEEEECCCCCEEEEecCCCcEEEEE
Confidence 88753 3 368999999999999999999999999999887653 333 345799999999999999999999999999
Q ss_pred ccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCc
Q 001319 658 NAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTS 737 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 737 (1101)
+.++.... . ..+.
T Consensus 294 ~~~~~~~~-~------------------------------------------------------------------~~~~ 306 (337)
T 1gxr_A 294 TPYGASIF-Q------------------------------------------------------------------SKES 306 (337)
T ss_dssp TTTCCEEE-E------------------------------------------------------------------EECS
T ss_pred CCCCeEEE-E------------------------------------------------------------------ecCC
Confidence 87662110 0 1156
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
..+.++.|+|+++.+++++.||.+++|++
T Consensus 307 ~~v~~~~~s~~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 307 SSVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp SCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred CcEEEEEECCCCCEEEEecCCCeEEEEEE
Confidence 77899999999999999999999999986
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.9e-36 Score=344.01 Aligned_cols=344 Identities=9% Similarity=0.099 Sum_probs=282.2
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~ 485 (1101)
..+++++|+|+|++|++|+.|+.|++||+.+++... .+..| ..+....|+++++ +|++|+.|+.|++|| .+++
T Consensus 57 ~~~~~~~~s~~g~~l~~~~~d~~v~i~d~~~~~~~~---~~~~~-~~~~~~~~~~~~~--~l~~~~~dg~i~iwd~~~~~ 130 (420)
T 3vl1_A 57 DAGKGNTFEKVGSHLYKARLDGHDFLFNTIIRDGSK---MLKRA-DYTAVDTAKLQMR--RFILGTTEGDIKVLDSNFNL 130 (420)
T ss_dssp BCCTTCEEEEEETTEEEEEETTEEEEEECCSEETTT---TSCSC-CEEEEEEECSSSC--EEEEEETTSCEEEECTTSCE
T ss_pred ccccceeeeecCCeEEEEEcCCcEEEEEecccceee---EEecC-CceEEEEEecCCC--EEEEEECCCCEEEEeCCCcc
Confidence 345679999999999999999999999999887665 34455 4556667899999 899999999999999 7788
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
....+.+|.+.|.+++|++ ++.+|++++.|+.|++||+.+++....+..|...|.+++|+|+++++++++. ++.
T Consensus 131 ~~~~~~~h~~~v~~~~~~~--~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~----d~~ 204 (420)
T 3vl1_A 131 QREIDQAHVSEITKLKFFP--SGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASL----DGT 204 (420)
T ss_dssp EEEETTSSSSCEEEEEECT--TSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEET----TSC
T ss_pred eeeecccccCccEEEEECC--CCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcC----CCc
Confidence 8888889999999999987 5689999999999999999999988889999999999999999999999986 889
Q ss_pred EEEEeCCCCeeEEEecccC--CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 566 LVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
|++||+.+++.+..+..+. ...+..+++.+.+... .... +...+.+++|+|++++
T Consensus 205 v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~---------------------~~~~--~~~~v~~~~~s~~~~~ 261 (420)
T 3vl1_A 205 IRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQ---------------------LHEI--STSKKNNLEFGTYGKY 261 (420)
T ss_dssp EEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSS---------------------CGGG--CCCCCCTTCSSCTTEE
T ss_pred EEEeECCCCceeEEeecCCCCCCCccEEEEecCCcce---------------------eeec--ccCcccceEEcCCCCE
Confidence 9999999999999988643 2357777776654321 1111 1336899999999999
Q ss_pred EEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCC
Q 001319 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSG 723 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 723 (1101)
|++++.||.|++||+.++..... +
T Consensus 262 l~~~~~dg~i~i~d~~~~~~~~~-~------------------------------------------------------- 285 (420)
T 3vl1_A 262 VIAGHVSGVITVHNVFSKEQTIQ-L------------------------------------------------------- 285 (420)
T ss_dssp EEEEETTSCEEEEETTTCCEEEE-E-------------------------------------------------------
T ss_pred EEEEcCCCeEEEEECCCCceeEE-c-------------------------------------------------------
Confidence 99999999999999875511000 0
Q ss_pred CeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCC
Q 001319 724 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 803 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1101)
. ..|
T Consensus 286 --------------------------------------------------------------------------~--~~~ 289 (420)
T 3vl1_A 286 --------------------------------------------------------------------------P--SKF 289 (420)
T ss_dssp --------------------------------------------------------------------------C--CTT
T ss_pred --------------------------------------------------------------------------c--ccc
Confidence 0 016
Q ss_pred CCCEeEEEecCCCC-eEEEEc-CCeEEEEECCCceE-EEEeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-
Q 001319 804 EEAVPCIALSKNDS-YVMSAT-GGKISLFNMMTFKV-MTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD- 878 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~-~la~~~-dg~i~vwd~~~~~~-~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~- 878 (1101)
...|.+++|+|+++ ++++++ ||.|++||+.+++. +..+.. |...|.++.+ + ++++|++++.||.|++|++.+.
T Consensus 290 ~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~l~s~~~d~~v~iw~~~~~~ 367 (420)
T 3vl1_A 290 TCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYF-A-AGALFVSSGFDTSIKLDIISDPE 367 (420)
T ss_dssp SSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEESTTSCEEEEEE-E-TTEEEEEETTTEEEEEEEECCTT
T ss_pred CCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccCCCCceEEEe-C-CCCEEEEecCCccEEEEeccCCC
Confidence 67899999999998 888887 89999999988754 666666 6667888855 4 5789999999999999999873
Q ss_pred --------eEEEeeccCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 001319 879 --------EVKSKLKGHQKRITGLAFSTSLN---ILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 879 --------~~~~~~~~h~~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd~~~ 919 (1101)
.....+.+|.+.|.+++|+|+++ .+++++.+|.+.+|+++.
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~~ 419 (420)
T 3vl1_A 368 SERPAIEFETPTFLVSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLSN 419 (420)
T ss_dssp CCSCEECTTSCEEECCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESCC
T ss_pred CCccceeccCccEEccCCcceEEEEEccCCCCcceEEEEcCCceEEEEeccC
Confidence 12234567899999999999999 788888899999999865
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-36 Score=345.31 Aligned_cols=332 Identities=15% Similarity=0.150 Sum_probs=269.5
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
..+++++|+|+|++ +++|+.|+.|++||+.+++... .+..| ..+...+|+|++++||+|
T Consensus 57 ~~~~~~~~s~~g~~-l~~~~~d~~v~i~d~~~~~~~~-------------------~~~~~-~~~~~~~~~~~~~~l~~~ 115 (420)
T 3vl1_A 57 DAGKGNTFEKVGSH-LYKARLDGHDFLFNTIIRDGSK-------------------MLKRA-DYTAVDTAKLQMRRFILG 115 (420)
T ss_dssp BCCTTCEEEEEETT-EEEEEETTEEEEEECCSEETTT-------------------TSCSC-CEEEEEEECSSSCEEEEE
T ss_pred ccccceeeeecCCe-EEEEEcCCcEEEEEecccceee-------------------EEecC-CceEEEEEecCCCEEEEE
Confidence 34568999999996 5889999999999998776543 24445 456666899999999999
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecc
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
+.|+.|++||+.+++... .+.+|.+.|++++|+|+++ +|++|+.|++|++|| .+++.+..+.+|.+.|.+++|+
T Consensus 116 ~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~ 190 (420)
T 3vl1_A 116 TTEGDIKVLDSNFNLQRE---IDQAHVSEITKLKFFPSGE--ALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAII 190 (420)
T ss_dssp ETTSCEEEECTTSCEEEE---ETTSSSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEE
T ss_pred ECCCCEEEEeCCCcceee---ecccccCccEEEEECCCCC--EEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEc
Confidence 999999999999887655 5679999999999999999 899999999999999 8899999999999999999998
Q ss_pred cCCCccEEEEeccCCeEEEEecCCCCeeeeccCC---C---------------------CceEEEEEccCCCEEEEeecC
Q 001319 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---G---------------------HWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 504 ~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---~---------------------~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
+ ++.+|++++.|++|++||+++++....+..+ . ..+.+++|+|+++++++++.
T Consensus 191 ~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~- 267 (420)
T 3vl1_A 191 D--RGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHV- 267 (420)
T ss_dssp T--TTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEET-
T ss_pred C--CCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcC-
Confidence 7 5689999999999999999998887766542 2 33444556889999999985
Q ss_pred CCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCCee-eEeeccCCCCCCCCeeEE
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~ 637 (1101)
++.|++||+.+++....+...+...+.+++|+|+++ +|++++.||.|++||+.+++. +..+..+. ...|.++.
T Consensus 268 ---dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~-~~~v~~~~- 342 (420)
T 3vl1_A 268 ---SGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINE-GTPINNVY- 342 (420)
T ss_dssp ---TSCEEEEETTTCCEEEEECCTTSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTSCSEEEEEST-TSCEEEEE-
T ss_pred ---CCeEEEEECCCCceeEEcccccCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcCchhhhhccC-CCCceEEE-
Confidence 889999999999988888765555899999999998 999999999999999998754 55555432 33677774
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
.+++++|++++.|+.|++|++............
T Consensus 343 ~~~~~~l~s~~~d~~v~iw~~~~~~~~~~~~~~----------------------------------------------- 375 (420)
T 3vl1_A 343 FAAGALFVSSGFDTSIKLDIISDPESERPAIEF----------------------------------------------- 375 (420)
T ss_dssp EETTEEEEEETTTEEEEEEEECCTTCCSCEECT-----------------------------------------------
T ss_pred eCCCCEEEEecCCccEEEEeccCCCCCccceec-----------------------------------------------
Confidence 557889999999999999998764211111000
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc---cEEEeecCCeEEEEEec
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV---GLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg~v~~w~~~ 767 (1101)
.....+ ..+...|..++|+|++. .+++++.+|.+.+|++.
T Consensus 376 -----~~~~~~-----~~~~~~v~~~~~s~~~~~~g~l~a~g~~g~~~~~~~~ 418 (420)
T 3vl1_A 376 -----ETPTFL-----VSNDDAVSQFCYVSDDESNGEVLEVGKNNFCALYNLS 418 (420)
T ss_dssp -----TSCEEE-----CCSSCCCCEEEEECCSSSSCEEEEEETTTEEEEEESC
T ss_pred -----cCccEE-----ccCCcceEEEEEccCCCCcceEEEEcCCceEEEEecc
Confidence 000000 33778899999999999 89999999999999864
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-34 Score=319.94 Aligned_cols=307 Identities=15% Similarity=0.211 Sum_probs=232.9
Q ss_pred CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC--eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV--NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~--~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
+.+++..+.+|.. .|.+++|+|+ +|++|+.|+.|++||+..+ .....+....+...|.+++|+|++++|++++.|
T Consensus 3 ~~~~~~~~~~h~~-~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D 79 (330)
T 2hes_X 3 SINLIKSLKLYKE-KIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFD 79 (330)
T ss_dssp CCEEEEEEECCSS-CEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETT
T ss_pred ccccceeeccCCC-ceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCC
Confidence 4566778888887 8999999987 9999999999999999875 344444322255589999999999999999999
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
++|++|+........ ..
T Consensus 80 ~~v~iw~~~~~~~~~--~~------------------------------------------------------------- 96 (330)
T 2hes_X 80 STVSIWAKEESADRT--FE------------------------------------------------------------- 96 (330)
T ss_dssp SCEEEEEC---------CC-------------------------------------------------------------
T ss_pred CcEEEEEcccCcCcc--cc-------------------------------------------------------------
Confidence 999999975321000 00
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
.. . +.. +. +|...|.++
T Consensus 97 ------------------~~-~--------~~~----------------------------------~~--~h~~~V~~v 113 (330)
T 2hes_X 97 ------------------MD-L--------LAI----------------------------------IE--GHENEVKGV 113 (330)
T ss_dssp ------------------CE-E--------EEE----------------------------------EC------CEEEE
T ss_pred ------------------ce-e--------EEE----------------------------------Ec--CCCCcEEEE
Confidence 00 0 000 00 278889999
Q ss_pred EecCCCCeEEEEc-CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc--eEEEe
Q 001319 811 ALSKNDSYVMSAT-GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD--EVKSK 883 (1101)
Q Consensus 811 ~~s~dg~~la~~~-dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~--~~~~~ 883 (1101)
+|+|+|++|++++ |++|++||+.. .+++..+.+|...|.+++|+| ++.+|++|+.|++|++||..++ +++..
T Consensus 114 ~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~p-~~~~l~s~s~D~~i~iW~~~~~~~~~~~~ 192 (330)
T 2hes_X 114 AWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHP-SEALLASSSYDDTVRIWKDYDDDWECVAV 192 (330)
T ss_dssp EECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEECS-SSSEEEEEETTSCEEEEEEETTEEEEEEE
T ss_pred EECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEECC-CCCEEEEEcCCCeEEEEECCCCCeeEEEE
Confidence 9999999999998 89999999842 356778899999999999999 8999999999999999999876 67889
Q ss_pred eccCCCCeeEEEEcCC--CCEEEEEeCCCcEEEEECCCCccccc---eEEeecCCCCCCCcceEEEcCCCCEEEEEeCCe
Q 001319 884 LKGHQKRITGLAFSTS--LNILVSSGADAQLCVWSIDTWEKRKS---VTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQ 958 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d--~~~l~s~s~Dg~v~lwd~~~~~~~~~---~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~ 958 (1101)
+.+|.+.|.+++|+|+ +.+|++++.|++|++||+.++..... .......+.....+.+++|++++.++.++.|+.
T Consensus 193 ~~~h~~~v~~~~~~~~~~~~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~~~l~s~~~dg~ 272 (330)
T 2hes_X 193 LNGHEGTVWSSDFDKTEGVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVGADGV 272 (330)
T ss_dssp ECCCSSCEEEEEECCSSSSCEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEECTTSCEEEEETTSC
T ss_pred ccCCCCcEEEEEecCCCCeeEEEEEeCCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEcCCCEEEEEeCCCE
Confidence 9999999999999999 77999999999999999976532111 222333332337899999998875444467999
Q ss_pred EEEEEcCCcee--eeEeccCCCCCC-CEEEEEEcc--CCCEEEEEeCCCcEEEEeCCC
Q 001319 959 LAIYDASKMER--IRQWTPQDALSA-PISCAVYSC--NSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 959 i~v~d~~~~~~--~~~~~~~~~h~~-~v~~v~~s~--dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
|++|+..+++. ..... .+|.. .|.+++|+| ++++|++|+.||+|++||+++
T Consensus 273 v~iw~~~~~~~~~~~~~~--~~h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 273 LAVYEEVDGEWKVFAKRA--LCHGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp EEEEEEETTEEEEEEEES--CTTTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred EEEEEcCCCceEEEeccc--cccccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 99999987742 32221 23355 899999999 789999999999999999865
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-35 Score=326.68 Aligned_cols=320 Identities=15% Similarity=0.218 Sum_probs=271.0
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
|.+.|.+++|||||++++++..++.+.+|+........ ...+|...|++++|+|+++ ++++++ |+.|++|| .+
T Consensus 8 ~~~~v~~~~~s~dg~~~~~~~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~-dg~i~iw~~~~ 81 (337)
T 1gxr_A 8 GSKPAYSFHVTADGQMQPVPFPPDALIGPGIPRHARQI---NTLNHGEVVCAVTISNPTR--HVYTGG-KGCVKVWDISH 81 (337)
T ss_dssp EEEECCEEEECSSSCEEECCCCTTSSSSTTCCSEEEEE---EEECCSSCCCEEEECSSSS--EEEEEC-BSEEEEEETTS
T ss_pred cCCceeEEEECCCCCEEEeecCCCcEeccccCCccccc---eeccCCCceEEEEEecCCc--EEEEcC-CCeEEEEECCC
Confidence 56789999999999999999887777777554432222 3458999999999999999 788888 99999999 55
Q ss_pred Cce---eEEee--cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 484 GRK---LFNFE--GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 484 ~~~---~~~~~--~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+.. +..+. +|...|.+++|++ ++++|++++.|+.|++||+.+.+ ....+..+...+.+++|+|++++++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 159 (337)
T 1gxr_A 82 PGNKSPVSQLDCLNRDNYIRSCKLLP--DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSC 159 (337)
T ss_dssp TTCCSCSEEEECSCTTSBEEEEEECT--TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEE
T ss_pred CCceeeeecccccCCCCcEEEEEEcC--CCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEE
Confidence 543 33333 7999999999987 66899999999999999999877 455677788889999999999999999
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
+. ++.|++||+.+++.+..+.+|.. .+.+++|+|+++++++++.||.|++||+.+++.+..+... ..+.+++
T Consensus 160 ~~----dg~v~~~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~---~~v~~~~ 231 (337)
T 1gxr_A 160 CS----DGNIAVWDLHNQTLVRQFQGHTD-GASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT---SQIFSLG 231 (337)
T ss_dssp ET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS---SCEEEEE
T ss_pred eC----CCcEEEEeCCCCceeeeeecccC-ceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCC---CceEEEE
Confidence 85 88999999999999999998876 8999999999999999999999999999999988877543 3689999
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
|+|+++++++++.++.|++|++.+... . .
T Consensus 232 ~s~~~~~l~~~~~~~~i~~~~~~~~~~-~-~------------------------------------------------- 260 (337)
T 1gxr_A 232 YCPTGEWLAVGMESSNVEVLHVNKPDK-Y-Q------------------------------------------------- 260 (337)
T ss_dssp ECTTSSEEEEEETTSCEEEEETTSSCE-E-E-------------------------------------------------
T ss_pred ECCCCCEEEEEcCCCcEEEEECCCCCe-E-E-------------------------------------------------
Confidence 999999999999999999999865410 0 0
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
T Consensus 261 -------------------------------------------------------------------------------- 260 (337)
T 1gxr_A 261 -------------------------------------------------------------------------------- 260 (337)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEe
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV 875 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~ 875 (1101)
.. .|...+.+++|+|+++++++++ ||.|++||+.+++.+... .|...|.+++|+| ++++|++++.||.|++|++
T Consensus 261 -~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~-~~~~~v~~~~~s~-~~~~l~~~~~dg~i~iw~~ 335 (337)
T 1gxr_A 261 -LH--LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS-KESSSVLSCDISV-DDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp -EC--CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEE-ECSSCEEEEEECT-TSCEEEEEETTSCEEEEEE
T ss_pred -Ec--CCccceeEEEECCCCCEEEEecCCCcEEEEECCCCeEEEEe-cCCCcEEEEEECC-CCCEEEEecCCCeEEEEEE
Confidence 00 1667789999999999999887 899999999998887554 4788999999999 8999999999999999997
Q ss_pred e
Q 001319 876 R 876 (1101)
Q Consensus 876 ~ 876 (1101)
.
T Consensus 336 ~ 336 (337)
T 1gxr_A 336 I 336 (337)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=320.77 Aligned_cols=299 Identities=19% Similarity=0.305 Sum_probs=241.5
Q ss_pred ccccCCccEEEEEE-----cc-CCCEEEEEECCCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCCCceEEEE
Q 001319 401 IFKDVPISVSRVAW-----SP-DGNYVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVT 470 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~-----sp-dg~~las~~~d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s 470 (1101)
++.+|.+.|++++| ++ |+++||+|+.|++|++||+.+++.. .....+.+|...|++++|+|++. ++++
T Consensus 16 ~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~--~l~s 93 (343)
T 2xzm_R 16 ILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENC--FAIS 93 (343)
T ss_dssp EEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTT--EEEE
T ss_pred eeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCC--EEEE
Confidence 58899999999999 77 9999999999999999999865421 22336789999999999999999 8999
Q ss_pred ecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc---CCCCceEEEEE
Q 001319 471 CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD---APGHWCTTMLY 546 (1101)
Q Consensus 471 ~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~---~~~~~v~~~~~ 546 (1101)
|+.|++|++|| .+++.+..+.+|...|.+++|+| ++.+|++++.|++|++||+... ...... .+...|.+++|
T Consensus 94 ~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp--~~~~l~s~~~d~~i~~wd~~~~-~~~~~~~~~~~~~~v~~~~~ 170 (343)
T 2xzm_R 94 SSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSP--DNRQILSAGAEREIKLWNILGE-CKFSSAEKENHSDWVSCVRY 170 (343)
T ss_dssp EETTSEEEEEETTSSCEEEEEECCCSCEEEEEECS--STTEEEEEETTSCEEEEESSSC-EEEECCTTTSCSSCEEEEEE
T ss_pred EcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECC--CCCEEEEEcCCCEEEEEeccCC-ceeeeecccCCCceeeeeee
Confidence 99999999999 88999999999999999999987 6689999999999999999743 333322 56778999999
Q ss_pred ccCC----------CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 547 SADG----------SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 547 s~d~----------~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
+|++ .++++++. ++.|++|| ..++....+.+|.. .+.+++|+|++++|++|+.||.|++||+..
T Consensus 171 ~~~~~~~~~~~~~~~~l~s~~~----d~~i~iwd-~~~~~~~~~~~h~~-~v~~~~~s~~g~~l~sgs~dg~v~iwd~~~ 244 (343)
T 2xzm_R 171 SPIMKSANKVQPFAPYFASVGW----DGRLKVWN-TNFQIRYTFKAHES-NVNHLSISPNGKYIATGGKDKKLLIWDILN 244 (343)
T ss_dssp CCCCCSCSCCCSSCCEEEEEET----TSEEEEEE-TTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTCEEEEEESSC
T ss_pred ccccccccccCCCCCEEEEEcC----CCEEEEEc-CCCceeEEEcCccc-cceEEEECCCCCEEEEEcCCCeEEEEECCC
Confidence 9987 68999886 89999999 55677788888877 899999999999999999999999999944
Q ss_pred -CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccc-ccccCCCcccccCcceeeeeeeccccccc
Q 001319 617 -VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSL-RAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 617 -~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~-~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
......+.. . ..|.+++|+|++.+++++ .|+.|++|++.+..... ..+...... .
T Consensus 245 ~~~~~~~~~~-~--~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~---------------~---- 301 (343)
T 2xzm_R 245 LTYPQREFDA-G--STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPIT---------------K---- 301 (343)
T ss_dssp CSSCSEEEEC-S--SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGG---------------G----
T ss_pred CcccceeecC-C--CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCceEEeecCcch---------------h----
Confidence 434444432 2 258999999999888755 57889999987652110 011100000 0
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecC
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~ 768 (1101)
.....+|...|.+++|+|+|+.|++++.||.|++|++..
T Consensus 302 -----------------------------------~~~~~~~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~ 340 (343)
T 2xzm_R 302 -----------------------------------AEGQKGKNPQCTSLAWNALGKKLFAGFTDGVIRTFSFET 340 (343)
T ss_dssp -----------------------------------BTTBCCSCCCEEEEEECSSSCCEEEEETTSEEEEEEEEE
T ss_pred -----------------------------------hhhhcCCCCceEEEEECCCCCeEEEecCCceEEEEEEEc
Confidence 000034778899999999999999999999999998753
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-35 Score=359.55 Aligned_cols=294 Identities=20% Similarity=0.297 Sum_probs=251.1
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
..+|.+.|++|+|+|++..+|++|+.|++|+|||+.+...... .....+.+|...|.+++|+|||+
T Consensus 378 l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~--------------~~~~~~~~h~~~v~~v~~s~~g~ 443 (694)
T 3dm0_A 378 MRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYG--------------VAQRRLTGHSHFVEDVVLSSDGQ 443 (694)
T ss_dssp EECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSC--------------EEEEEEECCSSCEEEEEECTTSS
T ss_pred cccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccc--------------cccceecCCCCcEEEEEECCCCC
Confidence 3469999999999998766889999999999999986543211 01134789999999999999999
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEe----ecCCc
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF----EGHEA 495 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~----~~h~~ 495 (1101)
+|++|+.|++|+|||+.+++..+ .+.+|...|.+++|+|+++ +|++|+.|++|++||..+.+...+ .+|..
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~ 518 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTR---RFVGHTKDVLSVAFSLDNR--QIVSASRDRTIKLWNTLGECKYTISEGGEGHRD 518 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEE---EEECCSSCEEEEEECTTSS--CEEEEETTSCEEEECTTSCEEEEECSSTTSCSS
T ss_pred EEEEEeCCCcEEEEECCCCccee---EEeCCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEECCCCcceeeccCCCCCCC
Confidence 99999999999999999987666 6789999999999999999 799999999999999555554443 46899
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.|.+++|+++.....+++++.|++|++||+++......+..|...|.+++|+|+|+++++++. |+.|++||+.+++
T Consensus 519 ~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~----Dg~i~iwd~~~~~ 594 (694)
T 3dm0_A 519 WVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGK----DGVVLLWDLAEGK 594 (694)
T ss_dssp CEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEET----TSBCEEEETTTTE
T ss_pred cEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeC----CCeEEEEECCCCc
Confidence 999999998665578999999999999999999998899999999999999999999999986 8999999999999
Q ss_pred eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC-----------------CCCCCeeEEe
Q 001319 576 IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-----------------LPNLPRLRFS 638 (1101)
Q Consensus 576 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-----------------~~~v~~v~~s 638 (1101)
.+..+..+ ..+.+++|+|++.++++++ ++.|++||+.+++.+..+..+.. ...+.+++|+
T Consensus 595 ~~~~~~~~--~~v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~s 671 (694)
T 3dm0_A 595 KLYSLEAN--SVIHALCFSPNRYWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVIYCTSLNWS 671 (694)
T ss_dssp EEECCBCS--SCEEEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCCCEEEEEEC
T ss_pred eEEEecCC--CcEEEEEEcCCCcEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeEEeeeEEEc
Confidence 88877654 3689999999987776665 56699999999988876653211 1135789999
Q ss_pred cCCCEEEEEEcCCcEEEEEcc
Q 001319 639 KEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
|+|++|++|+.||.|++|++.
T Consensus 672 pdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 672 ADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp TTSSEEEEEETTSEEEEEEC-
T ss_pred CCCCEEEEEcCCCeEEEEecc
Confidence 999999999999999999975
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-36 Score=346.99 Aligned_cols=382 Identities=12% Similarity=0.137 Sum_probs=278.2
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEEEEECCCe
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHL 429 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~las~~~d~~ 429 (1101)
.|+|+++. +++++ .|+. +++.+.. ...+|.+.|++++|+| ++++||+|+.||+
T Consensus 34 ~f~~~~~~-~~~~~------~w~~-~g~~~~~------------------~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~ 87 (437)
T 3gre_A 34 EFGPIQEI-VRSPN------MGNL-RGKLIAT------------------LMENEPNSITSSAVSPGETPYLITGSDQGV 87 (437)
T ss_dssp GGCCCCCC-CCCCC------GGGC-CCCEEEE------------------ECTTTTSCEEEEEEECSSSCEEEEEETTSE
T ss_pred hcCCcccc-ccccc------cccc-cceEEee------------------eccCCCCceEEEEECCCCCCEEEEecCCce
Confidence 37888884 45543 4874 3554431 2388999999999999 9999999999999
Q ss_pred EEEEeecC---CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc----CCceeEEeecCCcCeEEEec
Q 001319 430 IQLYSYAG---SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL----SGRKLFNFEGHEAPVYSICP 502 (1101)
Q Consensus 430 i~vwd~~~---~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~----~~~~~~~~~~h~~~v~~v~~ 502 (1101)
|+|||+.+ +........+ +|.+.|++++|+|+++ +|++|+.|++|++||. +++.+..+.+| .+..+.+
T Consensus 88 v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~--~i~~~~~ 162 (437)
T 3gre_A 88 IKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFD--AFAVSSKDGQIIVLKVNHYQQESEVKFLNCE--CIRKINL 162 (437)
T ss_dssp EEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSS--EEEEEETTSEEEEEEEEEEEETTEEEEEEEE--EEEEEEG
T ss_pred EEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCC--EEEEEeCCCEEEEEEeccccCCceeeccccc--eeEEEEc
Confidence 99999987 5433322233 6999999999999999 8999999999999993 67777777666 6777777
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEE--EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTML--YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~--~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
++.+ +...+.++. +++++.++++++. ++.|++||+.+++.+..+
T Consensus 163 ~~~~------------------------------~~~~~~~~~~~~~~~~~~l~~~~~----d~~i~iwd~~~~~~~~~~ 208 (437)
T 3gre_A 163 KNFG------------------------------KNEYAVRMRAFVNEEKSLLVALTN----LSRVIIFDIRTLERLQII 208 (437)
T ss_dssp GGGS------------------------------SCCCEEEEEEEECSSCEEEEEEET----TSEEEEEETTTCCEEEEE
T ss_pred cCcc------------------------------cccCceEEEEEEcCCCCEEEEEeC----CCeEEEEeCCCCeeeEEE
Confidence 6532 112233444 6789999999986 899999999999999999
Q ss_pred cc--cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe----cCCCEEEEEEcCCcEE
Q 001319 581 AG--FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS----KEGNLLAVTTADNGFK 654 (1101)
Q Consensus 581 ~~--~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s----~~g~~l~~~~~d~~i~ 654 (1101)
.+ |.. .+.+++|+|++++|++|+.||.|++||+++++.+..+.... ...|.+++|+ +++.+|++++.|+.|+
T Consensus 209 ~~~~h~~-~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~ 286 (437)
T 3gre_A 209 ENSPRHG-AVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSWSFGD-HAPITHVEVCQFYGKNSVIVVGGSSKTFLT 286 (437)
T ss_dssp ECCGGGC-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEEBCTT-CEEEEEEEECTTTCTTEEEEEEESTTEEEE
T ss_pred ccCCCCC-ceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEEecCC-CCceEEEEeccccCCCccEEEEEcCCCcEE
Confidence 88 554 89999999999999999999999999999999988875322 3378999554 5688999999999999
Q ss_pred EEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCC
Q 001319 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPEST 734 (1101)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 734 (1101)
+||+.++ .....+..
T Consensus 287 iwd~~~~-~~~~~~~~---------------------------------------------------------------- 301 (437)
T 3gre_A 287 IWNFVKG-HCQYAFIN---------------------------------------------------------------- 301 (437)
T ss_dssp EEETTTT-EEEEEEES----------------------------------------------------------------
T ss_pred EEEcCCC-cEEEEEEc----------------------------------------------------------------
Confidence 9999876 33333322
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 814 (1101)
|...+..+.|+|+++.+ .+.. +.+..|...|.+++|+
T Consensus 302 -~~~~~~~~~~~~~~~~l----~~~~-------------------------------------~~~~~~~~~v~~l~~~- 338 (437)
T 3gre_A 302 -SDEQPSMEHFLPIEKGL----EELN-------------------------------------FCGIRSLNALSTISVS- 338 (437)
T ss_dssp -SSSCCCGGGGSCBCSSG----GGCC-------------------------------------CCCCCSGGGGCCEEEE-
T ss_pred -CCCCCccceeccccccc----ccce-------------------------------------ecccccCCceEEEEEC-
Confidence 22222223333433322 0000 0111277889999999
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCC---CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR 890 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~ 890 (1101)
++++|++++ ||.|++||+.+++....+.+|.. .+....+++ ...+++.. |+...+.....+..|.+.
T Consensus 339 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~--------~~~~~~~~~~~~~~h~~~ 409 (437)
T 3gre_A 339 NDKILLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTA-NLTMLLRK--------MKRTSTHSVDDSLYHHDI 409 (437)
T ss_dssp TTEEEEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEET-TEEEEEEE--------CC-------------CCC
T ss_pred CceEEEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeec-ceEEEEEe--------cccccccccCcccccccc
Confidence 888999998 99999999999999998887643 345566666 44444433 333344445666789999
Q ss_pred eeEEEEcCC--CCEEEEEeCCCcEEEEE
Q 001319 891 ITGLAFSTS--LNILVSSGADAQLCVWS 916 (1101)
Q Consensus 891 V~~l~~s~d--~~~l~s~s~Dg~v~lwd 916 (1101)
|++++|+++ +.+|++|+.||.|++|+
T Consensus 410 I~~i~~~~~~~~~~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 410 INSISTCEVDETPLLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEEEESSSSEEEEEEETTSCEEEEC
T ss_pred eeeEeeeccCCceEEEEEcCCceEEEeC
Confidence 999999998 77999999999999995
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-35 Score=330.40 Aligned_cols=291 Identities=13% Similarity=0.184 Sum_probs=242.9
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DG 418 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg 418 (1101)
..+|.+.|++++|+|+|..+||+|+.||.|+|||+.+++.... ....+|...|.+++|+| ++
T Consensus 69 ~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~-----------------~~~~~h~~~v~~~~~~~~~~ 131 (383)
T 3ei3_B 69 ASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSF-----------------IQGMGPGDAITGMKFNQFNT 131 (383)
T ss_dssp ECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEE-----------------ECCCSTTCBEEEEEEETTEE
T ss_pred ccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCccccee-----------------eecCCcCCceeEEEeCCCCC
Confidence 3459999999999999933679999999999999998765431 11347999999999999 78
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeE
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~ 498 (1101)
++|++++.|+.|++||+.+ ..+..+....+|...|.+++|+|+++ +|++|+.|+.|++||.+++.+..+.+|...|.
T Consensus 132 ~~l~s~~~d~~i~iwd~~~-~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~h~~~v~ 208 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSG-SVIQVFAKTDSWDYWYCCVDVSVSRQ--MLATGDSTGRLLLLGLDGHEIFKEKLHKAKVT 208 (383)
T ss_dssp EEEEEEETTTEEEEEETTS-CEEEEEECCCCSSCCEEEEEEETTTT--EEEEEETTSEEEEEETTSCEEEEEECSSSCEE
T ss_pred CEEEEEeCCCEEEEEECCC-CceEEEeccCCCCCCeEEEEECCCCC--EEEEECCCCCEEEEECCCCEEEEeccCCCcEE
Confidence 9999999999999999996 44443333345568899999999999 89999999999999988999999999999999
Q ss_pred EEecccCCCcc-EEEEeccCCeEEEEecCC----CCeeeeccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCC
Q 001319 499 SICPHHKENIQ-FIFSTAIDGKIKAWLYDT----MGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 499 ~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~----~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
+++|++ ++. ++++++.|+.|++||+++ ......+ .+...|.+++|+| +++++++++. ++.|++||+.
T Consensus 209 ~~~~~~--~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~----d~~i~iwd~~ 281 (383)
T 3ei3_B 209 HAEFNP--RCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-PHEKPVNAAYFNPTDSTKLLTTDQ----RNEIRVYSSY 281 (383)
T ss_dssp EEEECS--SCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-ECSSCEEEEEECTTTSCEEEEEES----SSEEEEEETT
T ss_pred EEEECC--CCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-cCCCceEEEEEcCCCCCEEEEEcC----CCcEEEEECC
Confidence 999987 446 899999999999999987 4444444 5788999999999 9999999985 8999999999
Q ss_pred CCeeEEEecccCC----------------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 573 EGTIKRTYAGFRK----------------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 573 ~~~~~~~~~~~~~----------------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
+++....+.+|.. ..+..++|+|++++ +++.||.|++||+.+++.+..+..+.+...+.+++
T Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~~~~~~~~~~~~ 359 (383)
T 3ei3_B 282 DWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRDPNAAGIISLNK 359 (383)
T ss_dssp BTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECBTTBCSCCCEEE
T ss_pred CCccccccccccccccccccceEEeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecCCCCCceEEEEE
Confidence 9888777765431 12333566666665 66789999999999999999998765555677889
Q ss_pred EecCCCEEEEEEcCCcEEEEEccc
Q 001319 637 FSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
|+|++++|++++ |+.|++||+++
T Consensus 360 ~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 360 FSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECTTSSEEEEEE-TTEEEEEECC-
T ss_pred EecCccEEEEec-CCcEEEEecCC
Confidence 999999999997 89999999864
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-36 Score=348.46 Aligned_cols=343 Identities=11% Similarity=0.096 Sum_probs=235.1
Q ss_pred CCccEEEEEEccCC---------CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc
Q 001319 405 VPISVSRVAWSPDG---------NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK 475 (1101)
Q Consensus 405 h~~~v~~~~~spdg---------~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~ 475 (1101)
+.+.|.+|+|+|++ ++||+|+.++.. -..+|+++ .+++++.|+
T Consensus 132 ~~~~V~sv~w~p~~~~~~~~~~~~~LAv~~~~~~~--------------------------~~~~~~~~--~laS~s~D~ 183 (524)
T 2j04_B 132 VGGLVTDIAWLNIEENTDIGKDIQYLAVAVSQYMD--------------------------EPLNEHLE--MFDKEKHSS 183 (524)
T ss_dssp CCC--CCCSCEEECCCCSSCSSEEEEEEEEEC----------------------------------------------CE
T ss_pred CCCceeEEEecccCCCCccCcCCeEEEEEEecccC--------------------------Cccchhhh--hhccCCCCc
Confidence 57799999999987 899999866420 01368888 799999999
Q ss_pred eEEEEE-cCCcee----EEeecCCcCeEEEecccC----CCccEEEEeccCCeEEEEecCCCCe-----------eeecc
Q 001319 476 LIKVWE-LSGRKL----FNFEGHEAPVYSICPHHK----ENIQFIFSTAIDGKIKAWLYDTMGS-----------RVDYD 535 (1101)
Q Consensus 476 ~v~iwd-~~~~~~----~~~~~h~~~v~~v~~~~~----~~~~~l~s~~~d~~i~~wd~~~~~~-----------~~~~~ 535 (1101)
+|+||| .+++.. ..+.+|.+.|.+++|+|. +++.+|++++.||+|++||+..... ...+.
T Consensus 184 tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~ 263 (524)
T 2j04_B 184 CIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLS 263 (524)
T ss_dssp EEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEEC
T ss_pred eEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEE
Confidence 999999 555542 456778899999999986 3467999999999999999976542 23566
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-eEEEecccCCcceEEE--EEeCCC-CEEEEEeCCCcEEE
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKSNGVV--QFDTTQ-NHFLAVGEDSQIKF 611 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~v~~~--~~~~~~-~~l~~~~~dg~i~i 611 (1101)
.|...|++++|++++ .|++|+. |++|++||++++. +...+.+|.. .|.++ +|+|++ .+|++++.|++|++
T Consensus 264 ~h~~~v~sv~~s~~~-~lasgs~----DgtV~lWD~~~~~~~~~~~~~H~~-~V~sv~~~~s~~g~~~laS~S~D~tvkl 337 (524)
T 2j04_B 264 LADSLITTFDFLSPT-TVVCGFK----NGFVAEFDLTDPEVPSFYDQVHDS-YILSVSTAYSDFEDTVVSTVAVDGYFYI 337 (524)
T ss_dssp CTTTCEEEEEESSSS-EEEEEET----TSEEEEEETTBCSSCSEEEECSSS-CEEEEEEECCTTSCCEEEEEETTSEEEE
T ss_pred cCCCCEEEEEecCCC-eEEEEeC----CCEEEEEECCCCCCceEEeecccc-cEEEEEEEcCCCCCeEEEEeccCCeEEE
Confidence 788899999999865 7888885 9999999999764 4556788877 78888 578887 89999999999999
Q ss_pred EECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccc
Q 001319 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 691 (1101)
||+++++....+..+.....|.+++|+|+++.+++++.|++|++||+.++. ....+
T Consensus 338 WD~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~-~~~~l----------------------- 393 (524)
T 2j04_B 338 FNPKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAF-AVHPL----------------------- 393 (524)
T ss_dssp ECGGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTT-CCEEE-----------------------
T ss_pred EECCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccc-cceee-----------------------
Confidence 999988776665544322357899999999999999999999999987541 11000
Q ss_pred ccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCC
Q 001319 692 AVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQ 771 (1101)
Q Consensus 692 l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~ 771 (1101)
.
T Consensus 394 ------------------------------------------~------------------------------------- 394 (524)
T 2j04_B 394 ------------------------------------------V------------------------------------- 394 (524)
T ss_dssp ------------------------------------------E-------------------------------------
T ss_pred ------------------------------------------e-------------------------------------
Confidence 0
Q ss_pred CCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC-----CC
Q 001319 772 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-----PP 845 (1101)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-----~~ 845 (1101)
+|...|.+++|+|+|++|++|+ ||+|++||+... ....... +.
T Consensus 395 ------------------------------gH~~~V~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~-~~~~~~~~~~~~~~ 443 (524)
T 2j04_B 395 ------------------------------SRETTITAIGVSRLHPMVLAGSADGSLIITNAARR-LLHGIKNSSATQKS 443 (524)
T ss_dssp ------------------------------ECSSCEEEEECCSSCCBCEEEETTTEEECCBSCSS-TTTCC------CCC
T ss_pred ------------------------------cCCCceEEEEeCCCCCeEEEEECCCEEEEEechHh-hccccccCccceee
Confidence 1555666666666666666665 666666665432 1111110 11
Q ss_pred CCeeEEEEecCCCCEEEEEeCCCcEEEEEee-cceEEEeeccCCCCeeEEEEcCCCC---EEEEEeCCCcEEEEECCC
Q 001319 846 PASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKSKLKGHQKRITGLAFSTSLN---ILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 846 ~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd~~~ 919 (1101)
..+.+++|+| ++..+ .... .+++|+.. ++.++..+.+|...|.+++|+|++. ++|+|+.||.|+||++..
T Consensus 444 ~~v~~v~~sp-~g~~~-~~~~--~~~~~~~~~~g~~~~~l~gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~ 517 (524)
T 2j04_B 444 LRLWKWDYSI-KDDKY-RIDS--SYEVYPLTVNDVSKAKIDAHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSL 517 (524)
T ss_dssp CEEEECBCCS-SSCEE-EECC--CCCCCC-------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSC
T ss_pred eEEEEeccCC-CCCeE-EccC--CceecccccCCcceeeecCCCceEEEEECCCCCCccHHHHhhccCceEEEEEccc
Confidence 2467889999 77755 2222 34444443 5677888999999999999999964 999999999999999876
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-34 Score=324.97 Aligned_cols=303 Identities=12% Similarity=0.258 Sum_probs=234.2
Q ss_pred cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC------------------CceEEEEEccCCCEE
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG------------------HWCTTMLYSADGSRL 553 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~------------------~~v~~~~~s~d~~~l 553 (1101)
+|.+.|.+++|+| +|++|++++ ++.+++|++.+++....+..+. ..|.+++|+|+|++|
T Consensus 62 ~h~~~V~~v~fsp--dg~~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l 138 (393)
T 1erj_A 62 DHTSVVCCVKFSN--DGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFL 138 (393)
T ss_dssp ECSSCCCEEEECT--TSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEE
T ss_pred CCCCEEEEEEECC--CCCEEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEE
Confidence 5999999999987 668999876 7899999999888776655432 248999999999999
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
++++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++++.|++|++||+.+++....+..+. .+.
T Consensus 139 ~s~~~----d~~i~iwd~~~~~~~~~~~~h~~-~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~---~v~ 210 (393)
T 1erj_A 139 ATGAE----DRLIRIWDIENRKIVMILQGHEQ-DIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIED---GVT 210 (393)
T ss_dssp EEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSS---CEE
T ss_pred EEEcC----CCeEEEEECCCCcEEEEEccCCC-CEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCC---CcE
Confidence 99986 89999999999999999999987 89999999999999999999999999999999887776433 589
Q ss_pred eeEEec-CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCC
Q 001319 634 RLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPS 712 (1101)
Q Consensus 634 ~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~ 712 (1101)
+++|+| ++++|++++.|+.|++||+.++. ....+....
T Consensus 211 ~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~-~~~~~~~~~---------------------------------------- 249 (393)
T 1erj_A 211 TVAVSPGDGKYIAAGSLDRAVRVWDSETGF-LVERLDSEN---------------------------------------- 249 (393)
T ss_dssp EEEECSTTCCEEEEEETTSCEEEEETTTCC-EEEEEC-------------------------------------------
T ss_pred EEEEECCCCCEEEEEcCCCcEEEEECCCCc-EEEeecccc----------------------------------------
Confidence 999999 89999999999999999987652 111110000
Q ss_pred ceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcc
Q 001319 713 PIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGL 792 (1101)
Q Consensus 713 ~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 792 (1101)
....+|...|.+++|+|+++.+++++.||.|++||+.....
T Consensus 250 ------------------~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~--------------------- 290 (393)
T 1erj_A 250 ------------------ESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANN--------------------- 290 (393)
T ss_dssp ---------------------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------------------------
T ss_pred ------------------cCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCC---------------------
Confidence 00012444455555555555555555555555554321000
Q ss_pred ceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEE
Q 001319 793 LMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872 (1101)
Q Consensus 793 ~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~i 872 (1101)
..... ....+.+...+.+|...|.+++|+| ++.+|++|+.||.|++
T Consensus 291 --------------~~~~~-------------------~~~~~~~~~~~~~h~~~v~~~~~~~-~~~~l~sgs~D~~v~i 336 (393)
T 1erj_A 291 --------------KSDSK-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLF 336 (393)
T ss_dssp -------------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEE
T ss_pred --------------ccccc-------------------CCCCCcceEEEecccCcEEEEEECC-CCCEEEEEeCCCeEEE
Confidence 00000 0012345567788999999999999 8999999999999999
Q ss_pred EEeecceEEEeeccCCCCeeEEEEcC------CCCEEEEEeCCCcEEEEECCC
Q 001319 873 YNVRVDEVKSKLKGHQKRITGLAFST------SLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 873 wd~~~~~~~~~~~~h~~~V~~l~~s~------d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
||+.+++.+..+.+|.+.|.+++|++ ++++|++|+.||+|++|++..
T Consensus 337 wd~~~~~~~~~l~~h~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 337 WDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp EETTTCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EECCCCeEEEEECCCCCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999999999999999999999986 688999999999999999865
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-36 Score=348.60 Aligned_cols=342 Identities=9% Similarity=0.068 Sum_probs=248.5
Q ss_pred CcceeEeecCCCcEEEEEEecCC---------ceEEEE-------------------EeccCcEEEEecCCCceeccccc
Q 001319 334 PRTVAVSLHQGSTVISMDFHPSH---------QTLLLV-------------------GSSNGEITLWELAMRDRLVSKPF 385 (1101)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg---------~~llas-------------------g~~d~~i~iwd~~~~~~~~~~~~ 385 (1101)
......++.+.+.|++|+|+|++ + +||+ |+.|++|+|||+.+++....
T Consensus 123 ~~r~~~~~~~~~~V~sv~w~p~~~~~~~~~~~~-~LAv~~~~~~~~~~~~~~~~laS~s~D~tI~iWd~~~~~~~~~--- 198 (524)
T 2j04_B 123 GKRRGFIYNVGGLVTDIAWLNIEENTDIGKDIQ-YLAVAVSQYMDEPLNEHLEMFDKEKHSSCIQIFKMNTSTLHCV--- 198 (524)
T ss_dssp CCSCEEEEECCC--CCCSCEEECCCCSSCSSEE-EEEEEEEC------------------CEEEEEEEEETTTCCEE---
T ss_pred CCcceEEEECCCceeEEEecccCCCCccCcCCe-EEEEEEecccCCccchhhhhhccCCCCceEEEEEccCCCCCce---
Confidence 45555666678889999999886 4 3455 45778999999987764210
Q ss_pred eeecccccCccccccccccCCccEEEEEEccC------CCEEEEEECCCeEEEEeecCCccc--------ccceeeeccc
Q 001319 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPD------GNYVGVAFTKHLIQLYSYAGSNDL--------RQHSQIDAHV 451 (1101)
Q Consensus 386 ~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd------g~~las~~~d~~i~vwd~~~~~~~--------~~~~~l~~h~ 451 (1101)
...++.+|.+.|.+++|+|+ +.+||+|+.||+|+|||+.+++.. .....+.+|.
T Consensus 199 ------------~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~ 266 (524)
T 2j04_B 199 ------------KVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLAD 266 (524)
T ss_dssp ------------EEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTT
T ss_pred ------------EEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCC
Confidence 01125668899999999997 679999999999999999877532 1223678999
Q ss_pred CcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecCCcCeEEEecccCCCc-cEEEEeccCCeEEEEecCCC
Q 001319 452 GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVYSICPHHKENI-QFIFSTAIDGKIKAWLYDTM 528 (1101)
Q Consensus 452 ~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h~~~v~~v~~~~~~~~-~~l~s~~~d~~i~~wd~~~~ 528 (1101)
..|++++|++++ .|++|+.||+|++|| .++ .+...+.+|.+.|.+|++...+++ .+|++++.|++|++||+++.
T Consensus 267 ~~v~sv~~s~~~---~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~ 343 (524)
T 2j04_B 267 SLITTFDFLSPT---TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDI 343 (524)
T ss_dssp TCEEEEEESSSS---EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGH
T ss_pred CCEEEEEecCCC---eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCC
Confidence 999999999864 599999999999999 555 345678999999999943223355 79999999999999999887
Q ss_pred CeeeeccCCC--CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 529 GSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 529 ~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
+....+..+. ..|.+++|+|+++.+++++. ++.|++||++++.++..+.+|.. .|.+++|+|++++|++|+.|
T Consensus 344 ~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~----d~tv~lwd~~~~~~~~~l~gH~~-~V~sva~Sp~g~~l~Sgs~D 418 (524)
T 2j04_B 344 ATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDG----ASSLRAVPSRAAFAVHPLVSRET-TITAIGVSRLHPMVLAGSAD 418 (524)
T ss_dssp HHHCEEEEECSCCSCCCEEEETTTTEEEEECS----SSEEEEEETTCTTCCEEEEECSS-CEEEEECCSSCCBCEEEETT
T ss_pred CcccccccccccCcccceEeCCCcCeEEEeCC----CCcEEEEECcccccceeeecCCC-ceEEEEeCCCCCeEEEEECC
Confidence 6655544433 24789999999999998875 78999999999998888988877 89999999999999999999
Q ss_pred CcEEEEECCCCeeeEeeccC---CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc-ccccccccccCCCcccccCccee
Q 001319 607 SQIKFWDMDNVNILTSTDAE---GGLPNLPRLRFSKEGNLLAVTTADNGFKILANA-IGLRSLRAVENPPFEALRTPIES 682 (1101)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~---~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~ 682 (1101)
|+|++||+..+ .+...... .....+..++|+|++..+. ... .+.+|+.. ++ ....
T Consensus 419 gtv~lwd~~~~-~~~~~~~~~~~~~~~~v~~v~~sp~g~~~~-~~~--~~~~~~~~~~g-~~~~---------------- 477 (524)
T 2j04_B 419 GSLIITNAARR-LLHGIKNSSATQKSLRLWKWDYSIKDDKYR-IDS--SYEVYPLTVND-VSKA---------------- 477 (524)
T ss_dssp TEEECCBSCSS-TTTCC------CCCCEEEECBCCSSSCEEE-ECC--CCCCCC--------------------------
T ss_pred CEEEEEechHh-hccccccCccceeeeEEEEeccCCCCCeEE-ccC--CceecccccCC-ccee----------------
Confidence 99999998654 22221110 0111356889999987442 111 12222111 01 0000
Q ss_pred eeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc---cEEEeecCC
Q 001319 683 VALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV---GLLALGSNG 759 (1101)
Q Consensus 683 ~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~---~l~~~~~dg 759 (1101)
.+ .+|...|.+++|+|++. .+++++.+|
T Consensus 478 ----------------------------------------------~l---~gh~~~V~~Vafsp~~~~~~~lAsg~~~g 508 (524)
T 2j04_B 478 ----------------------------------------------KI---DAHGINITCTKWNETSAGGKCYAFSNSAG 508 (524)
T ss_dssp -----------------------------------------------------CCCSCCCEEECCSTTTTTEEEEECTTS
T ss_pred ----------------------------------------------ee---cCCCceEEEEECCCCCCccHHHHhhccCc
Confidence 01 34778899999999964 788888899
Q ss_pred eEEEEEecCC
Q 001319 760 VQKLWKWHRN 769 (1101)
Q Consensus 760 ~v~~w~~~~~ 769 (1101)
.|++|++...
T Consensus 509 ~vrlw~l~~~ 518 (524)
T 2j04_B 509 LLTLEYLSLE 518 (524)
T ss_dssp EEEEEECSCC
T ss_pred eEEEEEcccc
Confidence 9999997643
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=361.12 Aligned_cols=531 Identities=11% Similarity=0.026 Sum_probs=379.1
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEecc------CcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSN------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+|..+.......+...|...|.+++|||||++| |.++.+ ..|.+|++.+++..
T Consensus 35 l~~~~~~gg~~~~lt~~~~~v~~~~~SPDG~~l-a~~s~~~~~~~~~~i~~~d~~~g~~~-------------------- 93 (1045)
T 1k32_A 35 LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKI-AIRVMRGSSLNTADLYFYNGENGEIK-------------------- 93 (1045)
T ss_dssp EEEEETTTCCEEEEECSSSEEEEEEECTTSSEE-EEEEEESTTCCEEEEEEEETTTTEEE--------------------
T ss_pred EEEEECCCCcEEEeeeCCCcccCeEECCCCCEE-EEEEeeccCCCCCeEEEEECCCCCeE--------------------
Confidence 444443445566667799999999999999965 555433 48999999887642
Q ss_pred ccccCCccE-------EEEEEccCCCEEEEEECC------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceE
Q 001319 401 IFKDVPISV-------SRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467 (1101)
Q Consensus 401 ~~~~h~~~v-------~~~~~spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~ 467 (1101)
.+..|...+ .+++|||||+.+++++.+ ..|.+||+.+++... +..+ ....++|+| | +
T Consensus 94 ~lt~~~~~~~~~~~~~~~~~~SpDg~ll~~~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~--~~~~~~~sp-G---~ 163 (1045)
T 1k32_A 94 RITYFSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP----LNLG--PATHILFAD-G---R 163 (1045)
T ss_dssp ECCCCCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE----CCSC--SCSEEEEET-T---E
T ss_pred EcccCCCcccccccccccccCCCCCEEEEEECCcCCCcccceEEEEECCCCCeEE----ecCC--CcceeeeCC-C---E
Confidence 266788888 999999999977777644 458888888875432 3233 235677999 6 4
Q ss_pred EEEecC------------CceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC-Ceeee
Q 001319 468 VVTCGD------------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM-GSRVD 533 (1101)
Q Consensus 468 l~s~~~------------d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~-~~~~~ 533 (1101)
+++++. +...++|. ..+.....+.+|...+.+++|++ + .++++++.|+.+++|.++.. .....
T Consensus 164 l~~~~~~~~~~~~~~~~g~~~~~lw~~~~~~~~~~l~~~~~~v~~~~~s~--d-~l~~~~~~dg~~~l~~~~~~g~~~~~ 240 (1045)
T 1k32_A 164 RVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRK 240 (1045)
T ss_dssp EEEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEE
T ss_pred EEEeccCCCccccccccCCCcCCEEEECCCCCeEECcCCCCcccceEEeC--C-EEEEEEeccCceEEEEEeCCCCcceE
Confidence 666542 34567776 43355667789999999999975 4 57778888999999987653 33334
Q ss_pred ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC----------CcceEEEEEe-CCCCEEEE
Q 001319 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----------KKSNGVVQFD-TTQNHFLA 602 (1101)
Q Consensus 534 ~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----------~~~v~~~~~~-~~~~~l~~ 602 (1101)
+..+. .+...+|+|||++++++. ++.|++||....+.. .+.++. ...+..++|+ |+|+++++
T Consensus 241 l~~~~-~~~~~~~SpDG~~la~~~-----~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~ 313 (1045)
T 1k32_A 241 HTSFT-DYYPRHLNTDGRRILFSK-----GGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAF 313 (1045)
T ss_dssp CCCCC-SSCEEEEEESSSCEEEEE-----TTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEE
T ss_pred ecCCC-CcceeeEcCCCCEEEEEe-----CCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEE
Confidence 44333 466779999999999874 778999999554443 555421 1257789999 99999998
Q ss_pred EeCCCcEEEEECCCCeeeEeeccCCCCC-CCCeeEEecCCCEEEEEEcCCcEE-EEEccccccccccccCCCcccccCcc
Q 001319 603 VGEDSQIKFWDMDNVNILTSTDAEGGLP-NLPRLRFSKEGNLLAVTTADNGFK-ILANAIGLRSLRAVENPPFEALRTPI 680 (1101)
Q Consensus 603 ~~~dg~i~iwd~~~~~~~~~~~~~~~~~-~v~~v~~s~~g~~l~~~~~d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1101)
++ ++.|++|+...++... +.. +.. .+..++|+ ||+.|++++.++.+. +|+..++.. ..+
T Consensus 314 ~~-~~~i~~~~~~~~~~~~-~~~--~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~--~~l------------ 374 (1045)
T 1k32_A 314 VS-RGQAFIQDVSGTYVLK-VPE--PLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKA--EKF------------ 374 (1045)
T ss_dssp EE-TTEEEEECTTSSBEEE-CSC--CSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCE--EEC------------
T ss_pred EE-cCEEEEEcCCCCceEE-ccC--CCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCc--eEe------------
Confidence 87 7899999998877554 322 222 57889999 999999999887788 888765411 000
Q ss_pred eeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCe
Q 001319 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV 760 (1101)
Q Consensus 681 ~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 760 (1101)
..+...+..++|+|||+.+++++.++.
T Consensus 375 -----------------------------------------------------~~~~~~~~~~~~SpDG~~la~~~~~~~ 401 (1045)
T 1k32_A 375 -----------------------------------------------------EENLGNVFAMGVDRNGKFAVVANDRFE 401 (1045)
T ss_dssp -----------------------------------------------------CCCCCSEEEEEECTTSSEEEEEETTSE
T ss_pred -----------------------------------------------------cCCccceeeeEECCCCCEEEEECCCCe
Confidence 114567788999999999999999999
Q ss_pred EEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CC----------eEEE
Q 001319 761 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GG----------KISL 829 (1101)
Q Consensus 761 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg----------~i~v 829 (1101)
+++|++.. +..... .. .+...+.+++|||||++|++++ ++ .|++
T Consensus 402 v~~~d~~t----------------------g~~~~~-~~--~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l 456 (1045)
T 1k32_A 402 IMTVDLET----------------------GKPTVI-ER--SREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 456 (1045)
T ss_dssp EEEEETTT----------------------CCEEEE-EE--CSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEE
T ss_pred EEEEECCC----------------------CceEEe-cc--CCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEE
Confidence 99998643 222111 11 2677788999999999998876 33 7999
Q ss_pred EECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEE--EEEe
Q 001319 830 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNIL--VSSG 907 (1101)
Q Consensus 830 wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l--~s~s 907 (1101)
||+.+++ ...+..|...+..++|+| ++++|+.++.++...+|+....... ..+...+..+.+++++... +..+
T Consensus 457 ~d~~~g~-~~~l~~~~~~~~~~~~sp-dG~~l~~~s~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 531 (1045)
T 1k32_A 457 YDMEGRK-IFAATTENSHDYAPAFDA-DSKNLYYLSYRSLDPSPDRVVLNFS---FEVVSKPFVIPLIPGSPNPTKLVPR 531 (1045)
T ss_dssp EETTTTE-EEECSCSSSBEEEEEECT-TSCEEEEEESCCCCCEECSSSSCEE---CCSCBEEEEEESSTTCCCGGGCCCG
T ss_pred EECCCCc-EEEeeCCCcccCCceEcC-CCCEEEEEecccCCcCcchhccccc---cccCceeEEEEeCCCCCCccccCcC
Confidence 9999887 667777888899999999 9999999999999999987644332 2245566777777766543 3222
Q ss_pred CC-CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE--------------EeCCeEEEEEcCCceeeeE
Q 001319 908 AD-AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV--------------VHETQLAIYDASKMERIRQ 972 (1101)
Q Consensus 908 ~D-g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--------------~~d~~i~v~d~~~~~~~~~ 972 (1101)
.+ ...+.|++..... .... ...+. ..+..++++|||..+++ .....+.+||+.+++....
T Consensus 532 ~~~~~~~~~d~~g~~~-~~~~---l~~~~-~~~~~~~~s~dg~~~~~~~~~g~~~~~~~~~~~~~~l~~~d~~~~~~~~l 606 (1045)
T 1k32_A 532 SMTSEAGEYDLNDMYK-RSSP---INVDP-GDYRMIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEV 606 (1045)
T ss_dssp GGSCCCCCCCCTTGGG-GCEE---CSCCC-BCEEEEEECSSEEEEEECCCCCSHHHHHHCCCCCEEEEEEETTTCCEEEE
T ss_pred ccccccccccccCHhH-ceEE---cCCCC-CChhheEEcCCCeEEEEecccCcccccccccCCCceEEEEECCCCcEEEe
Confidence 22 2223455543211 1111 11121 56788999999987775 1245788999988875433
Q ss_pred eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCc
Q 001319 973 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLR 1013 (1101)
Q Consensus 973 ~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~ 1013 (1101)
. ..+..++|||||++|++++.| .|++||+.+++
T Consensus 607 ~-------~~v~~~~~S~DG~~l~~~~~~-~i~~~d~~~~~ 639 (1045)
T 1k32_A 607 K-------NNLTDLRLSADRKTVMVRKDD-GKIYTFPLEKP 639 (1045)
T ss_dssp E-------EEEEEEEECTTSCEEEEEETT-SCEEEEESSCT
T ss_pred e-------cCcceEEECCCCCEEEEEcCC-cEEEEeCccCc
Confidence 2 457899999999999999866 89999998877
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=326.98 Aligned_cols=292 Identities=16% Similarity=0.252 Sum_probs=249.4
Q ss_pred ccccCCCCcceeEeecCCCcE-EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV 405 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V-~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h 405 (1101)
.|.............+|.+.| .+++|+ ++ ++++|+.||.|++||+.+++.+. .+.+|
T Consensus 104 ~w~~~~~~~~~~~l~~h~~~v~~~~~~~--~~-~l~sgs~dg~i~vwd~~~~~~~~-------------------~~~~h 161 (464)
T 3v7d_B 104 NWYNPKFVPQRTTLRGHMTSVITCLQFE--DN-YVITGADDKMIRVYDSINKKFLL-------------------QLSGH 161 (464)
T ss_dssp HHHCTTCCCEEEEEECCSSSCEEEEEEE--TT-EEEEEETTSCEEEEETTTTEEEE-------------------EECCC
T ss_pred hhcCCCcCcceEEEcCCCCCcEEEEEEC--CC-EEEEEcCCCcEEEEECCCCcEEE-------------------EEeCC
Confidence 444444444444555688774 666664 55 56899999999999999987665 37789
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec--CCCceEEEEecCCceEEEEE-c
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
.+.|.+++|+|++ +|++|+.||+|++||+.+++.+. .+.+|.+.|.+++|++ ++. ++++|+.|++|++|| .
T Consensus 162 ~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~~~~~~--~l~s~s~d~~i~vwd~~ 235 (464)
T 3v7d_B 162 DGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTH---VFEGHNSTVRCLDIVEYKNIK--YIVTGSRDNTLHVWKLP 235 (464)
T ss_dssp SSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEEESSSCE--EEEEEETTSCEEEEECC
T ss_pred CcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEE---EECCCCCccEEEEEecCCCCC--EEEEEcCCCcEEEeeCC
Confidence 9999999999998 99999999999999999988665 6789999999999995 556 899999999999999 5
Q ss_pred CCc-----------------------eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC
Q 001319 483 SGR-----------------------KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539 (1101)
Q Consensus 483 ~~~-----------------------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~ 539 (1101)
++. .+..+.+|...|.++.. ++.++++++.|+.|++||+.+.+....+..|..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~----~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~ 311 (464)
T 3v7d_B 236 KESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSG----HGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD 311 (464)
T ss_dssp CCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEEEEE----ETTEEEEEETTSCEEEEETTTTEEEEEECCCSS
T ss_pred CCcccccccccCCcceEeeccCCCeEEEEEccCccceEEEEcC----CCCEEEEEeCCCeEEEEECCCCcEEEEecCCCC
Confidence 543 25577889999998853 557999999999999999999999999999999
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
.|.+++|+|+++++++++. ++.|++||+.+++.+..+.+|.. .+.+++++ ++++++++.||.|++||+.++..
T Consensus 312 ~v~~~~~~~~~~~l~sg~~----dg~i~vwd~~~~~~~~~~~~h~~-~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~ 384 (464)
T 3v7d_B 312 RIYSTIYDHERKRCISASM----DTTIRIWDLENGELMYTLQGHTA-LVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 384 (464)
T ss_dssp CEEEEEEETTTTEEEEEET----TSCEEEEETTTTEEEEEECCCSS-CEEEEEEC--SSEEEEEETTSEEEEEETTTCCE
T ss_pred CEEEEEEcCCCCEEEEEeC----CCcEEEEECCCCcEEEEEeCCCC-cEEEEEEc--CCEEEEEeCCCcEEEEECCCCce
Confidence 9999999999999999986 89999999999999999999887 78888887 57999999999999999999877
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
...... ...+..++|+++++++++++ |+.|++||+.++
T Consensus 385 ~~~~~~---~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~~g 422 (464)
T 3v7d_B 385 KFSYHH---TNLSAITTFYVSDNILVSGS-ENQFNIYNLRSG 422 (464)
T ss_dssp EEEEEC---TTCCCEEEEEECSSEEEEEE-TTEEEEEETTTC
T ss_pred eeeecC---CCCccEEEEEeCCCEEEEec-CCeEEEEECCCC
Confidence 666542 22578899999999999998 899999999887
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=319.36 Aligned_cols=289 Identities=12% Similarity=0.119 Sum_probs=255.3
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
.....+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++.+. .+.+|...|.+++|+|
T Consensus 25 ~~~l~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~~ 84 (369)
T 3zwl_B 25 AIKLTGHERPLTQVKYNKEGD-LLFSCSKDSSASVWYSLNGERLG-------------------TLDGHTGTIWSIDVDC 84 (369)
T ss_dssp EEEEECCSSCEEEEEECTTSC-EEEEEESSSCEEEEETTTCCEEE-------------------EECCCSSCEEEEEECT
T ss_pred cEEEEEeeceEEEEEEcCCCC-EEEEEeCCCEEEEEeCCCchhhh-------------------hhhhcCCcEEEEEEcC
Confidence 344556999999999999998 56899999999999999887665 3778999999999999
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC-----ceEEEEE-cCCc-----
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGR----- 485 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-----~~v~iwd-~~~~----- 485 (1101)
++++|++++.||.|++||+.+++.+. .+. |...|.+++|+|+++ ++++++.+ +.|++|| ..+.
T Consensus 85 ~~~~l~s~~~dg~i~iwd~~~~~~~~---~~~-~~~~v~~~~~~~~~~--~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~ 158 (369)
T 3zwl_B 85 FTKYCVTGSADYSIKLWDVSNGQCVA---TWK-SPVPVKRVEFSPCGN--YFLAILDNVMKNPGSINIYEIERDSATHEL 158 (369)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCEEE---EEE-CSSCEEEEEECTTSS--EEEEEECCBTTBCCEEEEEEEEECTTTCCE
T ss_pred CCCEEEEEeCCCeEEEEECCCCcEEE---Eee-cCCCeEEEEEccCCC--EEEEecCCccCCCCEEEEEEecCCccceee
Confidence 99999999999999999999988766 344 888999999999999 78998888 9999999 4432
Q ss_pred ------eeEEeecCCc--CeEEEecccCCCccEEEEeccCCeEEEEecCC-CCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 486 ------KLFNFEGHEA--PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 486 ------~~~~~~~h~~--~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
.+..+..|.+ .+.+++|++ ++.+|++++.||.|++||+.+ ......+..+...|.+++|+|++++|+++
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 236 (369)
T 3zwl_B 159 TKVSEEPIHKIITHEGLDAATVAGWST--KGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITS 236 (369)
T ss_dssp EEECSSCSEEEECCTTCCCEEEEEECG--GGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEEEECTTSSEEEEE
T ss_pred cccccceeeeccCCcCccceeEEEEcC--CCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEEEECCCCCEEEEe
Confidence 4455666776 899999987 668999999999999999998 66777888888999999999999999999
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC--------------cEEEEECCCCeeeEe
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--------------QIKFWDMDNVNILTS 622 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--------------~i~iwd~~~~~~~~~ 622 (1101)
+. ++.|++||+.+++.+..+.. ...+..++|+|+++++++++.++ .+++||..+++.+..
T Consensus 237 ~~----d~~i~v~d~~~~~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~ 310 (369)
T 3zwl_B 237 SR----DTNSFLVDVSTLQVLKKYET--DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGR 310 (369)
T ss_dssp ET----TSEEEEEETTTCCEEEEEEC--SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEE
T ss_pred cC----CceEEEEECCCCceeeeecC--CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhh
Confidence 85 88999999999999988883 23688999999999999999888 899999999999988
Q ss_pred eccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 623 TDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 623 ~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+..+.. .|.+++|+|++++|++++.||.|++|++..+
T Consensus 311 ~~~~~~--~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 347 (369)
T 3zwl_B 311 VQGHFG--PLNTVAISPQGTSYASGGEDGFIRLHHFEKS 347 (369)
T ss_dssp EECCSS--CEEEEEECTTSSEEEEEETTSEEEEEEECHH
T ss_pred eecccC--cEEEEEECCCCCEEEEEcCCCeEEEEECccc
Confidence 876644 8999999999999999999999999999876
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-34 Score=326.17 Aligned_cols=292 Identities=13% Similarity=0.175 Sum_probs=250.6
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC---
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--- 417 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--- 417 (1101)
.+|.+.|++++|+| + +|++|+.||.|+|||+.+++...... ....+.+|...|.+++|+|+
T Consensus 13 ~~h~~~i~~~~~~~--~-~l~s~~~dg~i~iw~~~~~~~~~~~~-------------~~~~~~~h~~~v~~~~~~~~~~~ 76 (397)
T 1sq9_A 13 KAHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKD-------------KSYSHFVHKSGLHHVDVLQAIER 76 (397)
T ss_dssp SCSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGG-------------GEEEEECCTTCEEEEEEEEEEET
T ss_pred hhhhcCeEEEEecC--C-eEEEEcCCCEEEEEECCCcccccCCC-------------cceEEecCCCcEEEEEEeccccc
Confidence 35999999999999 4 57899999999999999876211000 01236789999999999999
Q ss_pred -C---CEEEEEECCCeEEEEeecCCcc-----cccceeeecc-----cCcEEEEEEe----cCCCceE-EEEecCCceEE
Q 001319 418 -G---NYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAH-----VGAVNDLAFA----YPNKLLC-VVTCGDDKLIK 478 (1101)
Q Consensus 418 -g---~~las~~~d~~i~vwd~~~~~~-----~~~~~~l~~h-----~~~V~~l~~s----~d~~~~~-l~s~~~d~~v~ 478 (1101)
| ++|++++.|+.|++||+.+++. +. .+.+| ...|.+++|+ |+++ + |++++.|+.|+
T Consensus 77 ~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~--~~l~~~~~dg~i~ 151 (397)
T 1sq9_A 77 DAFELCLVATTSFSGDLLFYRITREDETKKVIFE---KLDLLDSDMKKHSFWALKWGASNDRLLS--HRLVATDVKGTTY 151 (397)
T ss_dssp TTEEEEEEEEEETTSCEEEEEEEECTTTCCEEEE---EECCSCTTGGGSCEEEEEEECCC----C--EEEEEEETTSCEE
T ss_pred CCccccEEEEEcCCCCEEEEEccCCcccccccce---eecccccccCCCcEEEEEEeeccCCCCc--eEEEEEeCCCcEE
Confidence 9 9999999999999999999876 44 56778 5899999999 9999 7 99999999999
Q ss_pred EEE-cC------CceeE-----Eee-------cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC---
Q 001319 479 VWE-LS------GRKLF-----NFE-------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--- 536 (1101)
Q Consensus 479 iwd-~~------~~~~~-----~~~-------~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--- 536 (1101)
+|| .+ ++.+. .+. .|...|.+++|++ ++ ++++++.|+.|++||+++......+..
T Consensus 152 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 228 (397)
T 1sq9_A 152 IWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHS 228 (397)
T ss_dssp EEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC-
T ss_pred EEeCCccccccccceeeccCcceeeeeeccccCCCCCceEEEECC--Cc-eEEEEeCCCcEEEEECCCCceeEEEecccc
Confidence 999 66 66666 774 4889999999987 66 999999999999999999888888887
Q ss_pred C---CCceEEEEEccCCCEEEEeecCCCCC---ceEEEEeCCCCeeEEEecc-------------cCCcceEEEEEeCCC
Q 001319 537 P---GHWCTTMLYSADGSRLFSCGTSKDGD---SFLVEWNESEGTIKRTYAG-------------FRKKSNGVVQFDTTQ 597 (1101)
Q Consensus 537 ~---~~~v~~~~~s~d~~~l~~~~~~~~~~---~~i~iwd~~~~~~~~~~~~-------------~~~~~v~~~~~~~~~ 597 (1101)
| ...|.+++|+|+++++++++. + +.|++||+.+++.+..+.+ |.. .+.+++|+|++
T Consensus 229 h~~~~~~i~~i~~~~~~~~l~~~~~----d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~ 303 (397)
T 1sq9_A 229 MINNSNSIRSVKFSPQGSLLAIAHD----SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSG 303 (397)
T ss_dssp --CCCCCEEEEEECSSTTEEEEEEE----ETTEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSS
T ss_pred ccccCCccceEEECCCCCEEEEEec----CCCCceEEEEECCCCcccceeccCcccccccccccccCC-cEEEEEECCCC
Confidence 7 889999999999999999986 7 8999999999999999988 665 89999999999
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEeec------cC-------------CCCCCCCeeEEecCC----------CEEEEEE
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTSTD------AE-------------GGLPNLPRLRFSKEG----------NLLAVTT 648 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~------~~-------------~~~~~v~~v~~s~~g----------~~l~~~~ 648 (1101)
++|++++.||.|++||+.+++.+..+. .+ .+...|.+++|+|++ ++|++++
T Consensus 304 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~ 383 (397)
T 1sq9_A 304 ETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVC 383 (397)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEE
T ss_pred CEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEec
Confidence 999999999999999999999998887 43 014579999999998 7999999
Q ss_pred cCCcEEEEEcccc
Q 001319 649 ADNGFKILANAIG 661 (1101)
Q Consensus 649 ~d~~i~iwd~~~~ 661 (1101)
.||.|++|++.++
T Consensus 384 ~dg~i~iw~~~~g 396 (397)
T 1sq9_A 384 LDRSIRWFREAGG 396 (397)
T ss_dssp TTTEEEEEEEEC-
T ss_pred CCCcEEEEEcCCC
Confidence 9999999998765
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-33 Score=322.67 Aligned_cols=323 Identities=18% Similarity=0.260 Sum_probs=274.2
Q ss_pred EeecCCCcE-EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 339 VSLHQGSTV-ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 339 ~~~~h~~~V-~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
...+|.+.| .| ++++|+ ++++|+.||.|++||+.+++.+. .+.+|...|.+++|+
T Consensus 113 ~l~~h~~~v~~~--~~~~g~-~l~sg~~dg~i~vwd~~~~~~~~-------------------~~~~h~~~v~~~~~~-- 168 (445)
T 2ovr_B 113 VLKGHDDHVITC--LQFCGN-RIVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMR-- 168 (445)
T ss_dssp EEECSTTSCEEE--EEEETT-EEEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEE--
T ss_pred EecccCCCcEEE--EEEcCC-EEEEEECCCcEEEEECCCCcEEE-------------------EEcCCCCCEEEEEec--
Confidence 344688765 55 555677 56899999999999999988765 377899999999997
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcC
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAP 496 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~ 496 (1101)
+.+|++|+.||+|++||+.+++.+. .+.+|...|.+++|+ ++ .+++|+.|++|++|| .+++.+..+.+|...
T Consensus 169 ~~~l~s~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~--~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~ 241 (445)
T 2ovr_B 169 DNIIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLH--EK--RVVSGSRDATLRVWDIETGQCLHVLMGHVAA 241 (445)
T ss_dssp TTEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEESSSCCEEEEEECCSSC
T ss_pred CCEEEEEeCCCeEEEEECCcCcEEE---EECCCCCcEEEEEec--CC--EEEEEeCCCEEEEEECCCCcEEEEEcCCccc
Confidence 6799999999999999999987765 678999999999996 44 699999999999999 889999999999999
Q ss_pred eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 497 VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 497 v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
|.++++ ++.++++++.||.|++||+++.+....+..+...|.+++| ++.++++++. ++.|++||+.+++.
T Consensus 242 v~~~~~----~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~----d~~i~i~d~~~~~~ 311 (445)
T 2ovr_B 242 VRCVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSL----DTSIRVWDVETGNC 311 (445)
T ss_dssp EEEEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEET----TSCEEEEETTTCCE
T ss_pred EEEEEE----CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeC----CCeEEEEECCCCCE
Confidence 999998 4578999999999999999999999899999999999999 8899999986 89999999999999
Q ss_pred EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-CCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 577 KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 577 ~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
+..+.+|.. .+.++.+ +++++++++.||.|++||+.+++.+..+..+. +...|.+++|+ +++|++++.||.|++
T Consensus 312 ~~~~~~~~~-~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~i 386 (445)
T 2ovr_B 312 IHTLTGHQS-LTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKL 386 (445)
T ss_dssp EEEECCCCS-CEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEE
T ss_pred EEEEcCCcc-cEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEE
Confidence 999998876 6666665 56799999999999999999999988887532 44578888885 689999999999999
Q ss_pred EEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCC
Q 001319 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTD 735 (1101)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (1101)
||+.++. .+..+.. .....
T Consensus 387 wd~~~~~-~~~~~~~------------------------------------------------------------~~~~~ 405 (445)
T 2ovr_B 387 WDLKTGE-FIRNLVT------------------------------------------------------------LESGG 405 (445)
T ss_dssp EETTTCC-EEEEEEE------------------------------------------------------------CTTGG
T ss_pred EECCCCc-eeeeeec------------------------------------------------------------cccCC
Confidence 9998762 2221100 00023
Q ss_pred CcccEEEEEeecCcccEEEeecCCe----EEEEEecC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGV----QKLWKWHR 768 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~----v~~w~~~~ 768 (1101)
+...|.+++|+|++..+++++.||. +.+||+..
T Consensus 406 ~~~~v~~~~~s~~~~~la~~~~dg~~~~~l~v~df~~ 442 (445)
T 2ovr_B 406 SGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDFDV 442 (445)
T ss_dssp GTCEEEEEEECSSEEEEEEECSSSSSCCEEEEEECCC
T ss_pred CCceEEEEEecCCEEEEEEcccCCCCccEEEEEECCC
Confidence 6788999999999999999999997 99999764
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-33 Score=323.82 Aligned_cols=316 Identities=19% Similarity=0.311 Sum_probs=272.7
Q ss_pred eeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEe
Q 001319 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWL 524 (1101)
Q Consensus 446 ~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd 524 (1101)
.+.+|.+.|.. +++++++ ++++|+.||+|++|| .+++.+..+.+|.+.|.+++|+ +.++++++.||+|++||
T Consensus 113 ~l~~h~~~v~~-~~~~~g~--~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~~~l~s~~~dg~i~vwd 185 (445)
T 2ovr_B 113 VLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR----DNIIISGSTDRTLKVWN 185 (445)
T ss_dssp EEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEE----TTEEEEEETTSCEEEEE
T ss_pred EecccCCCcEE-EEEEcCC--EEEEEECCCcEEEEECCCCcEEEEEcCCCCCEEEEEec----CCEEEEEeCCCeEEEEE
Confidence 57799987533 3555677 899999999999999 8999999999999999999985 35899999999999999
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
+.+++....+..|...|.++.++ +..+++++. ++.|++||+.+++.+..+.+|.. .+.++++ +++++++++
T Consensus 186 ~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~----dg~i~~wd~~~~~~~~~~~~~~~-~v~~~~~--~~~~l~~~~ 256 (445)
T 2ovr_B 186 AETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA-AVRCVQY--DGRRVVSGA 256 (445)
T ss_dssp TTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS-CEEEEEE--CSSCEEEEE
T ss_pred CCcCcEEEEECCCCCcEEEEEec--CCEEEEEeC----CCEEEEEECCCCcEEEEEcCCcc-cEEEEEE--CCCEEEEEc
Confidence 99999999999999999999995 667898885 89999999999999999998877 7888888 688999999
Q ss_pred CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeee
Q 001319 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1101)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1101)
.||.|++||+.+++.+..+..+. ..|.+++| ++.++++++.|+.|++||+.++. ....+.
T Consensus 257 ~dg~i~iwd~~~~~~~~~~~~~~--~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~--------------- 316 (445)
T 2ovr_B 257 YDFMVKVWDPETETCLHTLQGHT--NRVYSLQF--DGIHVVSGSLDTSIRVWDVETGN-CIHTLT--------------- 316 (445)
T ss_dssp TTSCEEEEEGGGTEEEEEECCCS--SCEEEEEE--CSSEEEEEETTSCEEEEETTTCC-EEEEEC---------------
T ss_pred CCCEEEEEECCCCcEeEEecCCC--CceEEEEE--CCCEEEEEeCCCeEEEEECCCCC-EEEEEc---------------
Confidence 99999999999999998887654 47888888 88999999999999999987651 110000
Q ss_pred eeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 685 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
T Consensus 317 -------------------------------------------------------------------------------- 316 (445)
T 2ovr_B 317 -------------------------------------------------------------------------------- 316 (445)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC
Q 001319 765 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS 843 (1101)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~ 843 (1101)
+|...+.++.+ ++.++++++ ||.|++||+.+++.+..+..
T Consensus 317 -------------------------------------~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 357 (445)
T 2ovr_B 317 -------------------------------------GHQSLTSGMEL--KDNILVSGNADSTVKIWDIKTGQCLQTLQG 357 (445)
T ss_dssp -------------------------------------CCCSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECS
T ss_pred -------------------------------------CCcccEEEEEE--eCCEEEEEeCCCeEEEEECCCCcEEEEEcc
Confidence 14455666665 466888887 89999999999999999886
Q ss_pred ---CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee-----ccCCCCeeEEEEcCCCCEEEEEeCCCc----
Q 001319 844 ---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-----KGHQKRITGLAFSTSLNILVSSGADAQ---- 911 (1101)
Q Consensus 844 ---~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~-----~~h~~~V~~l~~s~d~~~l~s~s~Dg~---- 911 (1101)
|...|++++|+ +.+|++|+.||.|++||+.+++.+..+ .+|.+.|.+++|+|++.+|++++.||+
T Consensus 358 ~~~~~~~v~~~~~~---~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~~~dg~~~~~ 434 (445)
T 2ovr_B 358 PNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETK 434 (445)
T ss_dssp TTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCE
T ss_pred CCCCCCCEEEEEEC---CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEcccCCCCccE
Confidence 78889999995 479999999999999999999988887 578899999999999999999999998
Q ss_pred EEEEECCC
Q 001319 912 LCVWSIDT 919 (1101)
Q Consensus 912 v~lwd~~~ 919 (1101)
|.+||+..
T Consensus 435 l~v~df~~ 442 (445)
T 2ovr_B 435 LLVLDFDV 442 (445)
T ss_dssp EEEEECCC
T ss_pred EEEEECCC
Confidence 99999976
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-34 Score=334.66 Aligned_cols=294 Identities=17% Similarity=0.231 Sum_probs=237.7
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGN 419 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~ 419 (1101)
.+|...|+|++|+|.+..+||+|+.||.|+|||+.+++.... ..+.+|.+.|++|+|+| |+.
T Consensus 116 ~~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~-----------------~~~~gH~~~V~~l~f~p~~~~ 178 (435)
T 4e54_B 116 APFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTF-----------------IKGIGAGGSITGLKFNPLNTN 178 (435)
T ss_dssp EECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEE-----------------ECCCSSSCCCCEEEECSSCTT
T ss_pred CCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeE-----------------EEccCCCCCEEEEEEeCCCCC
Confidence 458899999999996555789999999999999987764321 13678999999999998 789
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~ 499 (1101)
+|++|+.||+|++||++++.. ..+.....+...+.+++|+|+++ +|++|+.||.|++||.+++.+..+.+|...|.+
T Consensus 179 ~l~s~s~D~~v~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--~l~~g~~dg~i~~wd~~~~~~~~~~~h~~~v~~ 255 (435)
T 4e54_B 179 QFYASSMEGTTRLQDFKGNIL-RVFASSDTINIWFCSLDVSASSR--MVVTGDNVGNVILLNMDGKELWNLRMHKKKVTH 255 (435)
T ss_dssp EEEEECSSSCEEEEETTSCEE-EEEECCSSCSCCCCCEEEETTTT--EEEEECSSSBEEEEESSSCBCCCSBCCSSCEEE
T ss_pred EEEEEeCCCEEEEeeccCCce-eEEeccCCCCccEEEEEECCCCC--EEEEEeCCCcEeeeccCcceeEEEecccceEEe
Confidence 999999999999999987543 22222234455788999999999 899999999999999888889999999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeee---eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
++|+|..+ .++++++.|++|++||+++..... ....|...|++++|+|+|++|++++. |+.|++||+.+++.
T Consensus 256 v~~~p~~~-~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~----D~~i~iwd~~~~~~ 330 (435)
T 4e54_B 256 VALNPCCD-WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQ----KSEIRVYSASQWDC 330 (435)
T ss_dssp EEECTTCS-SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEES----SSCEEEEESSSSSS
T ss_pred eeecCCCc-eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcC----CCEEEEEECCCCcc
Confidence 99988542 588899999999999998766543 33457789999999999999999986 89999999999988
Q ss_pred EEEecccCCc-----ceEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCeeeEeeccCCCCCCCCee-EEe
Q 001319 577 KRTYAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRL-RFS 638 (1101)
Q Consensus 577 ~~~~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v-~~s 638 (1101)
...+..|... ......|+|++..+++++ .++.|++||..+++.+..+... +...|.++ +|+
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~-~~~~v~s~~~fs 409 (435)
T 4e54_B 331 PLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDP-ESSGISSLNEFN 409 (435)
T ss_dssp EEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCS-SCCCCCCEEEEC
T ss_pred ceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCC-CCCcEEEEEEEC
Confidence 8887665431 122356777777776654 3467999999999988876532 33467777 699
Q ss_pred cCCCEEEEEEcCCcEEEEEcccc
Q 001319 639 KEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
|+|++|++|+ |+.|+||++.++
T Consensus 410 pdg~~lasg~-d~~i~iW~~~~g 431 (435)
T 4e54_B 410 PMGDTLASAM-GYHILIWSQQEA 431 (435)
T ss_dssp TTSSCEEEEC-SSEEEECCCC--
T ss_pred CCCCEEEEEc-CCcEEEEECCcC
Confidence 9999999876 789999999876
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=319.34 Aligned_cols=316 Identities=15% Similarity=0.201 Sum_probs=255.1
Q ss_pred EEeCCCCeeEEEecccCCcceEEEEEeCCC-CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCCEEE
Q 001319 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQ-NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLA 645 (1101)
Q Consensus 568 iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~ 645 (1101)
+|+....+....+.+|.. .|.+++|+|++ ++|++|+.||.|++||+.+++....+...++...|.+++|+| ++.+|+
T Consensus 57 ~~~~~~~~~~~~~~~h~~-~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 135 (383)
T 3ei3_B 57 IRSLKSYKLHRTASPFDR-RVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLF 135 (383)
T ss_dssp HHHHTTCEEEEEECCCSS-CEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEE
T ss_pred cccccccceEEeccCCCC-CEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEE
Confidence 355566777888888877 89999999999 999999999999999999988888777655666899999999 789999
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+++.|+.|++||+.+. ....+..
T Consensus 136 s~~~d~~i~iwd~~~~--~~~~~~~------------------------------------------------------- 158 (383)
T 3ei3_B 136 VSSIRGATTLRDFSGS--VIQVFAK------------------------------------------------------- 158 (383)
T ss_dssp EEETTTEEEEEETTSC--EEEEEEC-------------------------------------------------------
T ss_pred EEeCCCEEEEEECCCC--ceEEEec-------------------------------------------------------
Confidence 9999999999998632 0000000
Q ss_pred EEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCC
Q 001319 726 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1101)
...+..
T Consensus 159 --------------------------------------------------------------------------~~~~~~ 164 (383)
T 3ei3_B 159 --------------------------------------------------------------------------TDSWDY 164 (383)
T ss_dssp --------------------------------------------------------------------------CCCSSC
T ss_pred --------------------------------------------------------------------------cCCCCC
Confidence 001567
Q ss_pred CEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC-EEEEEeCCCcEEEEEeec----ce
Q 001319 806 AVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRV----DE 879 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~dg~v~iwd~~~----~~ 879 (1101)
.|.+++|+|+++++++++ |+.|++||+ +++.+..+.+|...|.+++|+| +++ +|++++.|+.|++||+.+ +.
T Consensus 165 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~h~~~v~~~~~~~-~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 242 (383)
T 3ei3_B 165 WYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKLHKAKVTHAEFNP-RCDWLMATSSVDATVKLWDLRNIKDKNS 242 (383)
T ss_dssp CEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEECSSSCEEEEEECS-SCTTEEEEEETTSEEEEEEGGGCCSTTC
T ss_pred CeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEeccCCCcEEEEEECC-CCCCEEEEEeCCCEEEEEeCCCCCcccc
Confidence 799999999999999998 899999999 6788889999999999999999 777 999999999999999998 66
Q ss_pred EEEeeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC-CCCcceEEEcCCCCEEEEEeCC
Q 001319 880 VKSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQVRMLVVHET 957 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~~~l~~~~d~ 957 (1101)
++..+ +|...|.+++|+| ++++|++++.|+.|++||+.+++.......+...... ...+. +.|+|
T Consensus 243 ~~~~~-~~~~~v~~~~~s~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p----------- 309 (383)
T 3ei3_B 243 YIAEM-PHEKPVNAAYFNPTDSTKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK-ATWHP----------- 309 (383)
T ss_dssp EEEEE-ECSSCEEEEEECTTTSCEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC-CEECS-----------
T ss_pred eEEEe-cCCCceEEEEEcCCCCCEEEEEcCCCcEEEEECCCCccccccccccccccccccceE-EeccC-----------
Confidence 66666 6999999999999 9999999999999999999998766544332211110 01111 23433
Q ss_pred eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccce
Q 001319 958 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYP 1037 (1101)
Q Consensus 958 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 1037 (1101)
...+..++|+|||++ +|+.||.|+|||+.+++.+..+.. |.+...+
T Consensus 310 ----------------------~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~~----------~~~~~~~ 355 (383)
T 3ei3_B 310 ----------------------MYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLRD----------PNAAGII 355 (383)
T ss_dssp ----------------------SSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEECB----------TTBCSCC
T ss_pred ----------------------CCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeecC----------CCCCceE
Confidence 345677889999998 999999999999999999888864 3333344
Q ss_pred EEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1038 LVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1038 ~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
..++|+| ++.+|++|+ ||.|++||+.+
T Consensus 356 ~~~~~s~-~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 356 SLNKFSP-TGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp CEEEECT-TSSEEEEEE-TTEEEEEECC-
T ss_pred EEEEEec-CccEEEEec-CCcEEEEecCC
Confidence 5679999 799999997 99999999975
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-33 Score=308.59 Aligned_cols=291 Identities=19% Similarity=0.299 Sum_probs=242.7
Q ss_pred ceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc-----eeEEeecCCcCeEEEecccCCCccEEEEeccC
Q 001319 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-----KLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517 (1101)
Q Consensus 444 ~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~-----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d 517 (1101)
..+|+||.+.|++++|+|++.. +|+||+.|++|+||| .+++ +...+.+|...|.+++|++ ++.+|++++.|
T Consensus 31 ~~tL~GH~~~V~~v~~sp~~~~-~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~--dg~~l~s~~~d 107 (340)
T 4aow_A 31 RGTLKGHNGWVTQIATTPQFPD-MILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISS--DGQFALSGSWD 107 (340)
T ss_dssp EEEECCCSSCEEEEEECTTCTT-EEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECT--TSSEEEEEETT
T ss_pred EEEECCccCCEEEEEEeCCCCC-EEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECC--CCCEEEEEccc
Confidence 3478999999999999998533 899999999999999 4433 4677899999999999987 67899999999
Q ss_pred CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe-cccCCcceEEEEEeCC
Q 001319 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~ 596 (1101)
+.|++|+............+...+..+.+++++.++++++. ++.+++||.......... .+|.. .+..++|+++
T Consensus 108 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~----d~~~~~~d~~~~~~~~~~~~~~~~-~v~~~~~~~~ 182 (340)
T 4aow_A 108 GTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSR----DKTIKLWNTLGVCKYTVQDESHSE-WVSCVRFSPN 182 (340)
T ss_dssp SEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEET----TSCEEEECTTSCEEEEECSSSCSS-CEEEEEECSC
T ss_pred ccceEEeecccceeeeecCCCCceeEEEEeecCccceeecC----CCeEEEEEeCCCceEEEEeccccC-cccceEEccC
Confidence 99999999998888888888889999999999999999986 889999999876655443 44444 7888999876
Q ss_pred C--CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcc
Q 001319 597 Q--NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFE 674 (1101)
Q Consensus 597 ~--~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 674 (1101)
+ ..+++++.|+.|++||+.+++.+..+..+. ..|.+++|+|++++|++++.|+.|++||+.+.. .+..+
T Consensus 183 ~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~--~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~-~~~~~------ 253 (340)
T 4aow_A 183 SSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHT--GYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK-HLYTL------ 253 (340)
T ss_dssp SSSCEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECTTSSEEEEEETTCEEEEEETTTTE-EEEEE------
T ss_pred CCCcEEEEEcCCCEEEEEECCCCceeeEecCCC--CcEEEEEECCCCCEEEEEeCCCeEEEEEeccCc-eeeee------
Confidence 5 567889999999999999999988887664 489999999999999999999999999986541 00000
Q ss_pred cccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEE
Q 001319 675 ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 754 (1101)
Q Consensus 675 ~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~ 754 (1101)
T Consensus 254 -------------------------------------------------------------------------------- 253 (340)
T 4aow_A 254 -------------------------------------------------------------------------------- 253 (340)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCC
Q 001319 755 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT 834 (1101)
Q Consensus 755 ~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~ 834 (1101)
.+...+.+++|+|++.+++++.|+.|++||+.+
T Consensus 254 -----------------------------------------------~~~~~v~~~~~~~~~~~~~~~~d~~i~iwd~~~ 286 (340)
T 4aow_A 254 -----------------------------------------------DGGDIINALCFSPNRYWLCAATGPSIKIWDLEG 286 (340)
T ss_dssp -----------------------------------------------ECSSCEEEEEECSSSSEEEEEETTEEEEEETTT
T ss_pred -----------------------------------------------cCCceEEeeecCCCCceeeccCCCEEEEEECCC
Confidence 033457788888888777777788888888887
Q ss_pred ceEEEEee---------CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 835 FKVMTTFM---------SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 835 ~~~~~~~~---------~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
+..+..+. +|...|++++|+| ++++|++|+.||.|+|||+.+|+
T Consensus 287 ~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~-dg~~l~sgs~Dg~v~iW~~~tGt 339 (340)
T 4aow_A 287 KIIVDELKQEVISTSSKAEPPQCTSLAWSA-DGQTLFAGYTDNLVRVWQVTIGT 339 (340)
T ss_dssp TEEEEEECCC-------CCCCCEEEEEECT-TSSEEEEEETTSCEEEEEEEC--
T ss_pred CeEEEeccccceeeeccCCCCCEEEEEECC-CCCEEEEEeCCCEEEEEeCCCcC
Confidence 77665543 5788999999999 99999999999999999999885
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-33 Score=306.80 Aligned_cols=287 Identities=17% Similarity=0.266 Sum_probs=249.0
Q ss_pred ceeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
++...+ +|.+.|++++| |++++ +++|+.||.|++||+.+++... .+..|...|.+++|
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~~~~~-l~s~~~dg~v~vw~~~~~~~~~-------------------~~~~~~~~v~~~~~ 67 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-VDDSK-VASVSRDGTVRLWSKDDQWLGT-------------------VVYTGQGFLNSVCY 67 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-EETTE-EEEEETTSEEEEEEESSSEEEE-------------------EEEECSSCEEEEEE
T ss_pred HHHHHhhCCCCCcEEEEe-cCCCE-EEEEEcCCcEEEEECCCCEEEE-------------------EeecCCccEEEEEE
Confidence 344444 59999999999 99984 6899999999999998776554 36678999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCC
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHE 494 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~ 494 (1101)
+|++++|++|+.|+.|++|++...........+.+|...|.+++| +++ ++++++.|+.|++|| .++.+..+..|.
T Consensus 68 ~~~~~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~~~--~l~~~~~d~~i~~~d-~~~~~~~~~~~~ 142 (313)
T 3odt_A 68 DSEKELLLFGGKDTMINGVPLFATSGEDPLYTLIGHQGNVCSLSF--QDG--VVISGSWDKTAKVWK-EGSLVYNLQAHN 142 (313)
T ss_dssp ETTTTEEEEEETTSCEEEEETTCCTTSCC-CEECCCSSCEEEEEE--ETT--EEEEEETTSEEEEEE-TTEEEEEEECCS
T ss_pred CCCCCEEEEecCCCeEEEEEeeecCCCCcccchhhcccCEEEEEe--cCC--EEEEEeCCCCEEEEc-CCcEEEecccCC
Confidence 999999999999999999999876554555578899999999999 456 799999999999999 778888999999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
..+.++++.+. ++.++++++.|+.|++|| .......+.. +...+.+++|+|++. +++++. ++.|++||+.+
T Consensus 143 ~~v~~~~~~~~-~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~----dg~i~i~d~~~ 214 (313)
T 3odt_A 143 ASVWDAKVVSF-SENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSN----DGLIKLVDMHT 214 (313)
T ss_dssp SCEEEEEEEET-TTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEET----TSEEEEEETTT
T ss_pred CceeEEEEccC-CCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccC----CCeEEEEECCc
Confidence 99999999763 457999999999999999 3444555555 778899999999998 777765 89999999999
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcE
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF 653 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i 653 (1101)
++.+..+.+|.. .+.+++|+|++ .+++++.||.|++||+.+++.+..+..+.. .|.+++|+|+++ +++++.||.|
T Consensus 215 ~~~~~~~~~~~~-~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~--~i~~~~~~~~~~-~~~~~~dg~i 289 (313)
T 3odt_A 215 GDVLRTYEGHES-FVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAI--SIWSVDCMSNGD-IIVGSSDNLV 289 (313)
T ss_dssp CCEEEEEECCSS-CEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSS--CEEEEEECTTSC-EEEEETTSCE
T ss_pred hhhhhhhhcCCc-eEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCc--eEEEEEEccCCC-EEEEeCCCcE
Confidence 999999998877 89999999998 699999999999999999999988877644 799999999998 6679999999
Q ss_pred EEEEcccc
Q 001319 654 KILANAIG 661 (1101)
Q Consensus 654 ~iwd~~~~ 661 (1101)
++|++.++
T Consensus 290 ~iw~~~~~ 297 (313)
T 3odt_A 290 RIFSQEKS 297 (313)
T ss_dssp EEEESCGG
T ss_pred EEEeCCCC
Confidence 99999876
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-33 Score=319.94 Aligned_cols=292 Identities=15% Similarity=0.109 Sum_probs=246.5
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCc--eeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRD--RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~--~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
|.++|++++|+|+|+ ++|+|+.|+.|+|||+.+++ .+. .+.+|...|.+++|+|++++
T Consensus 7 ~~~~i~~~~~s~~~~-~l~~~~~d~~v~i~~~~~~~~~~~~-------------------~~~~h~~~v~~~~~~~~~~~ 66 (372)
T 1k8k_C 7 LVEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQVH-------------------ELKEHNGQVTGVDWAPDSNR 66 (372)
T ss_dssp CSSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEEEE-------------------EEECCSSCEEEEEEETTTTE
T ss_pred cCCCeEEEEECCCCC-EEEEEeCCCEEEEEeCCCCcEEeee-------------------eecCCCCcccEEEEeCCCCE
Confidence 889999999999998 56889999999999998875 332 36789999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce---e-EEeecCCc
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK---L-FNFEGHEA 495 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~---~-~~~~~h~~ 495 (1101)
|++++.|+.|++||+.+++.... ..+.+|...|.+++|+|+++ +|++++.|+.|++|| ..+.. . ....+|..
T Consensus 67 l~~~~~dg~i~vwd~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~ 143 (372)
T 1k8k_C 67 IVTCGTDRNAYVWTLKGRTWKPT-LVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRS 143 (372)
T ss_dssp EEEEETTSCEEEEEEETTEEEEE-EECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCS
T ss_pred EEEEcCCCeEEEEECCCCeeeee-EEeecCCCceeEEEECCCCC--EEEEEeCCCEEEEEEecCCCcceeeeeeecccCC
Confidence 99999999999999998764332 23568999999999999999 899999999999999 55552 2 33367899
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecC------------------CCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYD------------------TMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~------------------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
.|.+++|++ ++.+|++++.|+.|++||+. .......+..+...|.+++|+|+++++++++
T Consensus 144 ~i~~~~~~~--~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 221 (372)
T 1k8k_C 144 TVLSLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVS 221 (372)
T ss_dssp CEEEEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEE
T ss_pred CeeEEEEcC--CCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEECCCCCEEEEEe
Confidence 999999988 56899999999999999954 5667777778888999999999999999998
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--Ceee---------------
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNIL--------------- 620 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~--------------- 620 (1101)
. ++.|++||+.+++.+..+..+.. .+.+++|+|++.+++++ .|+.|++|++.+ ++..
T Consensus 222 ~----d~~i~i~d~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (372)
T 1k8k_C 222 H----DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRG 295 (372)
T ss_dssp T----TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEEE-TTSSCEEEEEETTTTEEEECCCCCCC-------
T ss_pred C----CCEEEEEECCCCceeEEEccCCC-CeEEEEEecCCCEEEEE-eCCeEEEEEccCcCceEEEeeccCccccchhhh
Confidence 5 89999999999999999998876 79999999999877776 999999999987 4310
Q ss_pred -----------------------EeeccCCCCCCCCeeEEe-cCC---CEEEEEEcCCcEEEEEccccccccc
Q 001319 621 -----------------------TSTDAEGGLPNLPRLRFS-KEG---NLLAVTTADNGFKILANAIGLRSLR 666 (1101)
Q Consensus 621 -----------------------~~~~~~~~~~~v~~v~~s-~~g---~~l~~~~~d~~i~iwd~~~~~~~~~ 666 (1101)
..+. .++...|.+++|. ++| .+|++++.||.|++|++.++...++
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~~~~~ 367 (372)
T 1k8k_C 296 LTARERFQNLDKKASSEGSAAAGAGLD-SLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESALK 367 (372)
T ss_dssp -CHHHHHHHCCCCC---------CCCS-SSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHHHCT
T ss_pred cchhhhhhhcccccccccCcccccccc-ccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChhHhhh
Confidence 1111 2455689999976 566 9999999999999999987754443
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-34 Score=323.18 Aligned_cols=290 Identities=15% Similarity=0.235 Sum_probs=243.8
Q ss_pred cCCCcEEEEEEecC---CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-
Q 001319 342 HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1101)
Q Consensus 342 ~h~~~V~~v~fspd---g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd- 417 (1101)
+|.+.|++++|+|+ +..++++++.++.|+|||+.+++.+.. + .......|...|.+++|+|+
T Consensus 16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~--~------------~~~~~~~~~~~v~~~~~~~~~ 81 (366)
T 3k26_A 16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRL--L------------QSYVDADADENFYTCAWTYDS 81 (366)
T ss_dssp TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEE--E------------EEEECSCTTCCEEEEEEEECT
T ss_pred CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEe--e------------eeccccCCCCcEEEEEeccCC
Confidence 59999999999994 444556666778999999998766532 1 11112347789999999999
Q ss_pred ---CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cCCceeEEe--
Q 001319 418 ---GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-- 490 (1101)
Q Consensus 418 ---g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-- 490 (1101)
|++|++|+.||.|++||+.+++.+. .+.+|...|.+++|+| ++. +|++++.|+.|++|| .+++.+..+
T Consensus 82 ~~~~~~l~~~~~dg~i~v~d~~~~~~~~---~~~~~~~~i~~~~~~~~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~ 156 (366)
T 3k26_A 82 NTSHPLLAVAGSRGIIRIINPITMQCIK---HYVGHGNAINELKFHPRDPN--LLLSVSKDHALRLWNIQTDTLVAIFGG 156 (366)
T ss_dssp TTCCEEEEEEETTCEEEEECTTTCCEEE---EEESCCSCEEEEEECSSCTT--EEEEEETTSCEEEEETTTTEEEEEECS
T ss_pred CCCCCEEEEecCCCEEEEEEchhceEee---eecCCCCcEEEEEECCCCCC--EEEEEeCCCeEEEEEeecCeEEEEecc
Confidence 6799999999999999999987766 6779999999999999 777 899999999999999 788888888
Q ss_pred -ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc----------------------------CCCCce
Q 001319 491 -EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------------------------APGHWC 541 (1101)
Q Consensus 491 -~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----------------------------~~~~~v 541 (1101)
.+|...|.+++|++ ++.+|++++.||.|++||+++.+....+. .+...|
T Consensus 157 ~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 234 (366)
T 3k26_A 157 VEGHRDEVLSADYDL--LGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYV 234 (366)
T ss_dssp TTSCSSCEEEEEECT--TSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCC
T ss_pred cccccCceeEEEECC--CCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceE
Confidence 68999999999987 56899999999999999998765443332 277889
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee--------------EEEecccCCcceEEEEEeCC--CCEEEEEeC
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--------------KRTYAGFRKKSNGVVQFDTT--QNHFLAVGE 605 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--------------~~~~~~~~~~~v~~~~~~~~--~~~l~~~~~ 605 (1101)
.+++|+ ++++++++. ++.|++||+.++.. +..+.+|.. .+.+++|+|+ +++|++++.
T Consensus 235 ~~~~~~--~~~l~~~~~----d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~~~l~~~~~ 307 (366)
T 3k26_A 235 DCVRWL--GDLILSKSC----ENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQC-DIWYMRFSMDFWQKMLALGNQ 307 (366)
T ss_dssp CEEEEE--TTEEEEECS----SSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSC-CSSCCCCEECTTSSEEEEECT
T ss_pred EEEEEc--CCEEEEEec----CCEEEEEeCCCccccccccccCCcchheeccccccCC-cEEEEEEcCCCCCcEEEEEec
Confidence 999998 779999875 89999999987643 777777776 7888999999 999999999
Q ss_pred CCcEEEEECCCCee----eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 606 DSQIKFWDMDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 606 dg~i~iwd~~~~~~----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
||.|++||+.+++. ...+..+.+...|.+++|+|++++|++++.||.|++||+.
T Consensus 308 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~ 365 (366)
T 3k26_A 308 VGKLYVWDLEVEDPHKAKCTTLTHHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRL 365 (366)
T ss_dssp TSCEEEEECCSSSGGGCEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred CCcEEEEECCCCCCccccceEEcccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEec
Confidence 99999999998764 3356665445689999999999999999999999999975
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-32 Score=321.10 Aligned_cols=346 Identities=16% Similarity=0.209 Sum_probs=270.4
Q ss_pred eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
.....+.+|....+.++.+ +++++++|+.||.|++||+.+++.+..+..+. ..|.+++|+|++ .+++|+.||+|+
T Consensus 112 ~~~~~l~~h~~~v~~~~~~--~~~~l~sgs~dg~i~vwd~~~~~~~~~~~~h~--~~V~~l~~~~~~-~l~s~s~dg~i~ 186 (464)
T 3v7d_B 112 PQRTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHD--GGVWALKYAHGG-ILVSGSTDRTVR 186 (464)
T ss_dssp CEEEEEECCSSSCEEEEEE--ETTEEEEEETTSCEEEEETTTTEEEEEECCCS--SCEEEEEECSTT-EEEEEETTSCEE
T ss_pred cceEEEcCCCCCcEEEEEE--CCCEEEEEcCCCcEEEEECCCCcEEEEEeCCC--cCEEEEEEcCCC-EEEEEeCCCCEE
Confidence 3556788888755666666 46799999999999999999999999887654 489999999988 999999999999
Q ss_pred EEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCC
Q 001319 655 ILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPEST 734 (1101)
Q Consensus 655 iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 734 (1101)
+||+.++ .....+ .
T Consensus 187 vwd~~~~-~~~~~~-----------------------------------------------------------------~ 200 (464)
T 3v7d_B 187 VWDIKKG-CCTHVF-----------------------------------------------------------------E 200 (464)
T ss_dssp EEETTTT-EEEEEE-----------------------------------------------------------------C
T ss_pred EEECCCC-cEEEEE-----------------------------------------------------------------C
Confidence 9999876 222222 2
Q ss_pred CCcccEEEEEee--cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEe
Q 001319 735 DTSSKVVRLLYT--NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIAL 812 (1101)
Q Consensus 735 ~~~~~i~~~~~s--~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 812 (1101)
+|...|.++.++ +++..+++++.||.+++|++.....................+........... +|...+.++
T Consensus 201 ~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~-- 276 (464)
T 3v7d_B 201 GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLR--GHMASVRTV-- 276 (464)
T ss_dssp CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEEC--CCSSCEEEE--
T ss_pred CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEcc--CccceEEEE--
Confidence 377888888888 57789999999999999998765432211111101111111111111122222 377777776
Q ss_pred cCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe
Q 001319 813 SKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 891 (1101)
Q Consensus 813 s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V 891 (1101)
++++.++++++ ||.|++||+.+++.+..+.+|...|.+++|+| ++++|++|+.||.|++||+.+++++..+.+|...|
T Consensus 277 ~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v 355 (464)
T 3v7d_B 277 SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALV 355 (464)
T ss_dssp EEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred cCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcC-CCCEEEEEeCCCcEEEEECCCCcEEEEEeCCCCcE
Confidence 67889999998 89999999999999999999999999999999 89999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeee
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIR 971 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~ 971 (1101)
.+++|+ +++|++++.||+|++||+.+++..... . ....+..++|++++.++++++|+.|++||+.+++.+.
T Consensus 356 ~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~--~-----~~~~~~~~~~~~~~~~l~~~~dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 356 GLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSY--H-----HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEE--E-----CTTCCCEEEEEECSSEEEEEETTEEEEEETTTCCEEE
T ss_pred EEEEEc--CCEEEEEeCCCcEEEEECCCCceeeee--c-----CCCCccEEEEEeCCCEEEEecCCeEEEEECCCCcEEe
Confidence 999997 579999999999999999986643222 1 1256788999999999999999999999999999887
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
..... |...|.+++|+ ++.++++++.||.+.+|-
T Consensus 427 ~~~~~--~~~~v~~v~~~-~~~l~~~~~~~g~~~i~~ 460 (464)
T 3v7d_B 427 ANILK--DADQIWSVNFK-GKTLVAAVEKDGQSFLEI 460 (464)
T ss_dssp SCTTT--TCSEEEEEEEE-TTEEEEEEEETTEEEEEE
T ss_pred hhhcc--CCCcEEEEEec-CCEEEEEEEeCCeEEEEE
Confidence 64433 38999999997 444555666777665553
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-34 Score=319.48 Aligned_cols=287 Identities=13% Similarity=0.213 Sum_probs=240.6
Q ss_pred cCCCcEEEEEEecCCceEEEEEec---cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSS---NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD- 417 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~---d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd- 417 (1101)
+|.+.|.+++|+|+|++++++|+. ||.|+|||+.+++.... ...+|...|.+++|+|+
T Consensus 16 ~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~------------------~~~~~~~~v~~~~~~~~~ 77 (357)
T 3i2n_A 16 GFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL------------------REIEKAKPIKCGTFGATS 77 (357)
T ss_dssp ECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE------------------EEEEESSCEEEEECTTCC
T ss_pred CCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce------------------eeecccCcEEEEEEcCCC
Confidence 499999999999999888888887 99999999998875431 13368999999999999
Q ss_pred --CCEEEEEECCCeEEEEeecCCc-ccccceeeecccCcEEEEEE------ecCCCceEEEEecCCceEEEEE-cCCc-e
Q 001319 418 --GNYVGVAFTKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAF------AYPNKLLCVVTCGDDKLIKVWE-LSGR-K 486 (1101)
Q Consensus 418 --g~~las~~~d~~i~vwd~~~~~-~~~~~~~l~~h~~~V~~l~~------s~d~~~~~l~s~~~d~~v~iwd-~~~~-~ 486 (1101)
|++|++|+.||.|++||+.+++ .+. .+.+|...|.+++| +|+++ +|++++.|+.|++|| .+++ .
T Consensus 78 ~~~~~l~~~~~dg~i~iwd~~~~~~~~~---~~~~~~~~v~~~~~~~~~~~s~~~~--~l~~~~~d~~i~vwd~~~~~~~ 152 (357)
T 3i2n_A 78 LQQRYLATGDFGGNLHIWNLEAPEMPVY---SVKGHKEIINAIDGIGGLGIGEGAP--EIVTGSRDGTVKVWDPRQKDDP 152 (357)
T ss_dssp TTTCCEEEEETTSCEEEECTTSCSSCSE---EECCCSSCEEEEEEESGGGCC-CCC--EEEEEETTSCEEEECTTSCSSC
T ss_pred CCCceEEEecCCCeEEEEeCCCCCccEE---EEEecccceEEEeeccccccCCCcc--EEEEEeCCCeEEEEeCCCCCCc
Confidence 7999999999999999999987 444 67899999999955 67888 899999999999999 6665 6
Q ss_pred eEEeecCCc----CeEEEe----cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEcc---CCCEEEE
Q 001319 487 LFNFEGHEA----PVYSIC----PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA---DGSRLFS 555 (1101)
Q Consensus 487 ~~~~~~h~~----~v~~v~----~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~---d~~~l~~ 555 (1101)
+..+..|.+ .+.+++ |++ ++.++++++.|+.|++||+++...... ..+...|.+++|+| ++.++++
T Consensus 153 ~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~v~~~~~~~~~~~~~~l~~ 229 (357)
T 3i2n_A 153 VANMEPVQGENKRDCWTVAFGNAYNQ--EERVVCAGYDNGDIKLFDLRNMALRWE-TNIKNGVCSLEFDRKDISMNKLVA 229 (357)
T ss_dssp SEEECCCTTSCCCCEEEEEEECCCC---CCCEEEEEETTSEEEEEETTTTEEEEE-EECSSCEEEEEESCSSSSCCEEEE
T ss_pred ceeccccCCCCCCceEEEEEEeccCC--CCCEEEEEccCCeEEEEECccCceeee-cCCCCceEEEEcCCCCCCCCEEEE
Confidence 777776665 788888 544 678999999999999999998876444 45677899999999 9999999
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEec-----ccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCC------------
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYA-----GFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV------------ 617 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~-----~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~------------ 617 (1101)
++. ++.|++||+.+++....+. +|.. .+.+++|+|+++ ++++++.||.|++||+..+
T Consensus 230 ~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~ 304 (357)
T 3i2n_A 230 TSL----EGKFHVFDMRTQHPTKGFASVSEKAHKS-TVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIE 304 (357)
T ss_dssp EES----TTEEEEEEEEEEETTTEEEEEEEECCSS-CEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCC
T ss_pred ECC----CCeEEEEeCcCCCcccceeeeccCCCcC-CEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCc
Confidence 985 8999999998877665554 6766 899999999998 7999999999999998754
Q ss_pred -------eeeEeeccCCCCCCCCeeEEecCCCEEE-EEEcCCcEEEEEcccc
Q 001319 618 -------NILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (1101)
Q Consensus 618 -------~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~i~iwd~~~~ 661 (1101)
+.+..+..+ ...|.+++|+|++++|+ +++.|+.|++|++.+.
T Consensus 305 ~~~~~~~~~~~~~~~~--~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~ 354 (357)
T 3i2n_A 305 MGVAGSVSLLQNVTLS--TQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKL 354 (357)
T ss_dssp CCCCCEEEEEEEEECC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECC-
T ss_pred cccccccceeeccccC--CCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCc
Confidence 344455544 44899999999999998 7999999999998764
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-33 Score=314.12 Aligned_cols=300 Identities=11% Similarity=0.114 Sum_probs=231.2
Q ss_pred CCCcEEEEEEecCCceEEEEEecc-------CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSN-------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d-------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
-+.+|+|++|+|||+ +||+|+.| +.|+||++..+.......+. ......+.+|...|.+++++
T Consensus 13 ~g~PV~sv~fs~dg~-~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~---------~~~~~~l~~~~~~v~s~~~~ 82 (365)
T 4h5i_A 13 VGYPAYGAKFLNNDT-LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFH---------ILSEFALEDNDDSPTAIDAS 82 (365)
T ss_dssp CSSCEEEEEEEETTE-EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEE---------EEEEEECCTTSCCCCEEEEE
T ss_pred CCCCEEEEEEeCCCc-EEEEECCCccccCCCCEEEEEEEcCCCcceeeeee---------eeeEEEccCCCCceEEEEeC
Confidence 456899999999998 67888653 35999999876543211111 01112477899999988764
Q ss_pred cCCCEEEEE-----------ECCCeEEEEeecCCcccccc------eeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 416 PDGNYVGVA-----------FTKHLIQLYSYAGSNDLRQH------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 416 pdg~~las~-----------~~d~~i~vwd~~~~~~~~~~------~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
++.+++| +.|+.+++|++.++...... .....+...+.+++|+|||+.+.+++++.|++|+
T Consensus 83 --~~~~~~g~~~~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~ 160 (365)
T 4h5i_A 83 --KGIILVGCNENSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMR 160 (365)
T ss_dssp --TTEEEEECCCCHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEE
T ss_pred --CCEEEEEECCCccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEE
Confidence 5666665 35778999999876432211 1123455679999999999965566778999999
Q ss_pred EEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee--eccCCCCceEEEEEccCCCEEEE
Q 001319 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 479 iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
||| .+++++..+. |.+.|.+++|+| ||+++++++.+ .+++|+..++.... ....+...|.+++|+|+++++++
T Consensus 161 iwd~~~~~~~~~~~-~~~~V~~v~fsp--dg~~l~s~s~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fspdg~~l~~ 236 (365)
T 4h5i_A 161 IIDPSDLTEKFEIE-TRGEVKDLHFST--DGKVVAYITGS-SLEVISTVTGSCIARKTDFDKNWSLSKINFIADDTVLIA 236 (365)
T ss_dssp EEETTTTEEEEEEE-CSSCCCEEEECT--TSSEEEEECSS-CEEEEETTTCCEEEEECCCCTTEEEEEEEEEETTEEEEE
T ss_pred EeECCCCcEEEEeC-CCCceEEEEEcc--CCceEEeccce-eEEEEEeccCcceeeeecCCCCCCEEEEEEcCCCCEEEE
Confidence 999 8888888876 778899999987 67899998855 56666666666554 33456678999999999999999
Q ss_pred eecCCCCCceEEEEeCCCCee----EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEee-ccCCCCC
Q 001319 556 CGTSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTST-DAEGGLP 630 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~~~~~~~ 630 (1101)
++.+......+++|+...... ...+.+|.. .|.+++|+|+|++|++|+.|++|+|||+.+++++..+ ..| ..
T Consensus 237 ~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH--~~ 313 (365)
T 4h5i_A 237 ASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFK-GITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIFKQAH--SF 313 (365)
T ss_dssp EEESSSCCEEEEEEEEETTEEEEEEEEEEESSCS-CEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEETTSS--SS
T ss_pred EecCCcceeEEeecccccceecceeeeeecCCCC-CeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEecCcc--cC
Confidence 987554455789999877653 345666666 7999999999999999999999999999999988875 444 45
Q ss_pred CCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 631 NLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.|++++|+|||++|++++.|++|+||++...
T Consensus 314 ~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 314 AITEVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp CEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred CEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 8999999999999999999999999999655
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=321.47 Aligned_cols=260 Identities=12% Similarity=0.076 Sum_probs=209.7
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...|.+|+|||||+ ++|+++.|++|+ |...++ .+.+|...|.+++|+|||
T Consensus 15 ~~~v~sv~~SpDG~-~iASas~D~TV~--d~~~~~----------------------~l~gh~~~v~~V~FsPdg----- 64 (588)
T 2j04_A 15 EDWKNNLTWARDGT-LYLTTFPDISIG--QPKYAK----------------------DINCNSKNLFHVKEFPLE----- 64 (588)
T ss_dssp SSSSCCEEECTTSC-EEEECSSSEEEE--EECCCS----------------------CCSSBGGGTEEEEEECCC-----
T ss_pred hccEEEEEECCCCC-EEEEEcCCceee--cccccc----------------------eecCCCccEEEEEECCCC-----
Confidence 46899999999998 679999999999 644332 256899999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCc-----CeE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEA-----PVY 498 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~-----~v~ 498 (1101)
.++.+.+|+.+....+ .+ +|...|.+++|||||+ .|++++.||.|++||..+ ++..+. |.. .|.
T Consensus 65 --~~~~~~~~~~~~~~~~----~~-~~~~~V~~vawSPdG~--~LAs~s~dg~V~iwd~~~-~l~~l~-~~~~~~~~sv~ 133 (588)
T 2j04_A 65 --FENKLDFELAQQNGLL----NS-QPVCYPRVCKPSPIDD--WMAVLSNNGNVSVFKDNK-MLTNLD-SKGNLSSRTYH 133 (588)
T ss_dssp --CCCTTTTSCCCSSCSS----TT-SCSCCEEEEEECSSSS--CEEEEETTSCEEEEETTE-EEEECC-CSSCSTTTCEE
T ss_pred --CcceEEEEeCCCceEe----ec-CCCCcEEEEEECCCCC--EEEEEeCCCcEEEEeCCc-eeeecc-CCCccccccEE
Confidence 4555555554432211 12 5688999999999999 799999999999999444 667777 765 499
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCe-------eeec----cCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-------RVDY----DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-------~~~~----~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
+++|+| ||++|++|+.||+|++||+.++.. ...+ .+|..+|.+++|+||| +++++. |+.|+
T Consensus 134 svafSP--DG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~----D~tVr 205 (588)
T 2j04_A 134 CFEWNP--IESSIVVGNEDGELQFFSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALS----NNSVF 205 (588)
T ss_dssp EEEECS--SSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEET----TCCEE
T ss_pred EEEEcC--CCCEEEEEcCCCEEEEEECCCCccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeC----CCeEE
Confidence 999988 779999999999999999988752 3443 5667799999999999 666664 89999
Q ss_pred EEeCCCCee---EEEec-ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE--ecCC
Q 001319 568 EWNESEGTI---KRTYA-GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF--SKEG 641 (1101)
Q Consensus 568 iwd~~~~~~---~~~~~-~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~--s~~g 641 (1101)
+||+.++.. .+++. +|. ..|..++|+ ++.+++++ +++|++||+.+++....... +...|..++| +|++
T Consensus 206 lWd~~~~~~~~~~~tL~~~h~-~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~~g--h~~~V~~va~~~s~d~ 279 (588)
T 2j04_A 206 SMTVSASSHQPVSRMIQNASR-RKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLKTG--SLENFHIIPLNHEKES 279 (588)
T ss_dssp EECCCSSSSCCCEEEEECCCS-SCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEECS--CCSCCCEEEETTCSSC
T ss_pred EEECCCCccccceeeeccccc-CcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEEcC--CCceEEEEEeeeCCCC
Confidence 999988774 35664 554 489999999 68888887 69999999998887444433 4558999999 9999
Q ss_pred CEEEEEEcCCcEEEEEcc
Q 001319 642 NLLAVTTADNGFKILANA 659 (1101)
Q Consensus 642 ~~l~~~~~d~~i~iwd~~ 659 (1101)
..+++++.+|+ ++|...
T Consensus 280 ~~La~a~edG~-klw~~d 296 (588)
T 2j04_A 280 TILLMSNKTSY-KVLLED 296 (588)
T ss_dssp EEEEECSSCEE-EEEESS
T ss_pred CEEEEEcCCCC-EEEeec
Confidence 99999999999 999864
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-33 Score=322.64 Aligned_cols=350 Identities=15% Similarity=0.188 Sum_probs=248.7
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeecc-----------CCCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDA-----------EGGLP 630 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-----------~~~~~ 630 (1101)
+..+++|+...++....+.+|.. .|.+++|+| ++++|++++.||.|++||+.+++....+.. ..+..
T Consensus 22 ~~~~~v~~~~~~~~~~~~~~h~~-~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (408)
T 4a11_B 22 ESTRRVLGLELNKDRDVERIHGG-GINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRY 100 (408)
T ss_dssp HHHHHHHTEEECTTEEECCCCSS-CEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSS
T ss_pred cCcceeeccccCcceeeeeccCC-cEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCC
Confidence 44577888888888888888877 899999999 999999999999999999998766544431 12455
Q ss_pred CCCeeEEec-CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCC
Q 001319 631 NLPRLRFSK-EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPV 709 (1101)
Q Consensus 631 ~v~~v~~s~-~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~ 709 (1101)
.|.+++|+| ++.+|++++.|+.|++||+.++. ....
T Consensus 101 ~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~-~~~~------------------------------------------ 137 (408)
T 4a11_B 101 SVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADV------------------------------------------ 137 (408)
T ss_dssp CEEEEEECTTCTTCEEEEETTSEEEEEETTTTE-EEEE------------------------------------------
T ss_pred cEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCc-ccee------------------------------------------
Confidence 899999999 77899999999999999987541 0000
Q ss_pred CCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccC
Q 001319 710 RPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPS 789 (1101)
Q Consensus 710 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1101)
+
T Consensus 138 ------------------------------------------------------~------------------------- 138 (408)
T 4a11_B 138 ------------------------------------------------------F------------------------- 138 (408)
T ss_dssp ------------------------------------------------------E-------------------------
T ss_pred ------------------------------------------------------c-------------------------
Confidence 0
Q ss_pred CccceeeccCCCCCCCCEeEEEecC---CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC-EEEEE
Q 001319 790 SGLLMANDVAGVNLEEAVPCIALSK---NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIG 864 (1101)
Q Consensus 790 ~~~~~~~~~~~~~~~~~v~~~~~s~---dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g 864 (1101)
.+...+.++++++ ++.++++++ +|.|++||+.+++.+..+..|...|++++|+| ++. +|++|
T Consensus 139 ------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~-~~~~ll~~~ 205 (408)
T 4a11_B 139 ------------NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP-RYDYILATA 205 (408)
T ss_dssp ------------ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS-SCTTEEEEE
T ss_pred ------------cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC-CCCcEEEEE
Confidence 0334456666666 445888887 89999999999999999999999999999999 666 69999
Q ss_pred eCCCcEEEEEeecce-EEEee---------------ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEE
Q 001319 865 TEDSTIHIYNVRVDE-VKSKL---------------KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTI 928 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~-~~~~~---------------~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~ 928 (1101)
+.||.|++||+.++. .+..+ .+|...|.+++|+|++++|++++.||.|++||+.+++.......
T Consensus 206 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~ 285 (408)
T 4a11_B 206 SADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYG 285 (408)
T ss_dssp ETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCC
T ss_pred cCCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccc
Confidence 999999999998764 33333 57899999999999999999999999999999999876543322
Q ss_pred eecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEe
Q 001319 929 HIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 929 ~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd 1008 (1101)
...................+.+++++.++.|++||+.+++.+..+..| ...|++++|+|++++|++|+.||.|++||
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~s~~~dg~i~iw~ 362 (408)
T 4a11_B 286 KVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGH---YKTVDCCVFQSNFQELYSGSRDCNILAWV 362 (408)
T ss_dssp CCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEECCC---SSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred cccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeeccC---CCeEEEEEEcCCCCEEEEECCCCeEEEEe
Confidence 222222212333344455666666788999999999999999988765 89999999999999999999999999999
Q ss_pred CCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1009 ADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1009 ~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
+.+++.+..... .. ....+.+.....+.+++.|+.+++|+...
T Consensus 363 ~~~~~~~~~~~~-----------~~----~~~~~~~~~~~~~~~~~~~~~~~~W~~~~ 405 (408)
T 4a11_B 363 PSLYEPVPDDDE-----------TT----TKSQLNPAFEDAWSSSDEEGGTSAWSHPQ 405 (408)
T ss_dssp ECC-------------------------------------------------------
T ss_pred CCCCCccCCCCc-----------eE----eccccccccceeecccCccCceeecCCcc
Confidence 999987655432 11 12234444566777888999999998764
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-32 Score=306.82 Aligned_cols=288 Identities=13% Similarity=0.176 Sum_probs=248.5
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
..+.+|...|++++|+|||++||+|+.||.|++||+.+++.+. .+.+|.+.|.+++|+|+++ +|++++.|+.|++
T Consensus 26 ~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~s~~~dg~i~i 100 (369)
T 3zwl_B 26 IKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLG---TLDGHTGTIWSIDVDCFTK--YCVTGSADYSIKL 100 (369)
T ss_dssp EEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEE---EECCCSSCEEEEEECTTSS--EEEEEETTTEEEE
T ss_pred EEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhh---hhhhcCCcEEEEEEcCCCC--EEEEEeCCCeEEE
Confidence 3588999999999999999999999999999999999988766 6889999999999999999 8999999999999
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccC-----CeEEEEecCCCCe-----------eeeccCCCC--c
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGS-----------RVDYDAPGH--W 540 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~-----------~~~~~~~~~--~ 540 (1101)
|| .+++.+..+. |...|.+++|++ ++.++++++.+ +.|++||+..... ...+..+.. .
T Consensus 101 wd~~~~~~~~~~~-~~~~v~~~~~~~--~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (369)
T 3zwl_B 101 WDVSNGQCVATWK-SPVPVKRVEFSP--CGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDA 177 (369)
T ss_dssp EETTTCCEEEEEE-CSSCEEEEEECT--TSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCC
T ss_pred EECCCCcEEEEee-cCCCeEEEEEcc--CCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccc
Confidence 99 8888888887 888999999987 66899999998 9999999876542 223333444 8
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
+.+++|+|+++++++++. ++.|++||+.+ ++.+..+..|.. .+.+++|+|++++|++++.||.|++||+.+++.
T Consensus 178 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~ 252 (369)
T 3zwl_B 178 ATVAGWSTKGKYIIAGHK----DGKISKYDVSNNYEYVDSIDLHEK-SISDMQFSPDLTYFITSSRDTNSFLVDVSTLQV 252 (369)
T ss_dssp EEEEEECGGGCEEEEEET----TSEEEEEETTTTTEEEEEEECCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCE
T ss_pred eeEEEEcCCCCEEEEEcC----CCEEEEEECCCCcEeEEEEecCCC-ceeEEEECCCCCEEEEecCCceEEEEECCCCce
Confidence 999999999999999885 89999999999 788888888876 899999999999999999999999999999999
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEEcCC--------------cEEEEEccccccccccccCCCcccccCcceeeee
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN--------------GFKILANAIGLRSLRAVENPPFEALRTPIESVAL 685 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~--------------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 685 (1101)
+..+.. ...+..++|+|+++++++++.++ .+++||..++ ...
T Consensus 253 ~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~-~~~-------------------- 308 (369)
T 3zwl_B 253 LKKYET---DCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFE-EEI-------------------- 308 (369)
T ss_dssp EEEEEC---SSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTC-CEE--------------------
T ss_pred eeeecC---CCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCC-cch--------------------
Confidence 888873 33689999999999999999988 4555555443 111
Q ss_pred eeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 686 KVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 686 s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
..+ .+|...|.+++|+|+++.+++++.||.|++|+
T Consensus 309 ----------------------------------------~~~-----~~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~ 343 (369)
T 3zwl_B 309 ----------------------------------------GRV-----QGHFGPLNTVAISPQGTSYASGGEDGFIRLHH 343 (369)
T ss_dssp ----------------------------------------EEE-----ECCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred ----------------------------------------hhe-----ecccCcEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence 111 23788999999999999999999999999999
Q ss_pred ecCC
Q 001319 766 WHRN 769 (1101)
Q Consensus 766 ~~~~ 769 (1101)
+...
T Consensus 344 ~~~~ 347 (369)
T 3zwl_B 344 FEKS 347 (369)
T ss_dssp ECHH
T ss_pred Cccc
Confidence 8653
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-34 Score=325.47 Aligned_cols=285 Identities=13% Similarity=0.088 Sum_probs=224.6
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCC--ceeccccceeecccccCccccccccccCCccEEEEEEccCCCE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNY 420 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~ 420 (1101)
|.+.|++++|+|+|+ +||+|+.|+.|+|||+.++ +.+. .+.+|...|.+++|+|++++
T Consensus 10 ~~~~v~~~~~s~~g~-~l~~~~~d~~i~iw~~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~ 69 (377)
T 3dwl_C 10 LPKPSYEHAFNSQRT-EFVTTTATNQVELYEQDGNGWKHAR-------------------TFSDHDKIVTCVDWAPKSNR 69 (377)
T ss_dssp CSSCCSCCEECSSSS-EEECCCSSSCBCEEEEETTEEEECC-------------------CBCCCSSCEEEEEECTTTCC
T ss_pred CCCcEEEEEECCCCC-EEEEecCCCEEEEEEccCCceEEEE-------------------EEecCCceEEEEEEeCCCCE
Confidence 567999999999998 5689999999999999877 3332 47889999999999999999
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc---eeEEeec-CCc
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEG-HEA 495 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~---~~~~~~~-h~~ 495 (1101)
||+|+.|++|++||+.+++.......+.+|...|++++|+|+++ +|++++.|+.|++|| .+++ ....+.+ |..
T Consensus 70 l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~--~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~ 147 (377)
T 3dwl_C 70 IVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNED--KFAVGSGARVISVCYFEQENDWWVSKHLKRPLRS 147 (377)
T ss_dssp EEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSS--CCEEEESSSCEEECCC-----CCCCEEECSSCCS
T ss_pred EEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCC--EEEEEecCCeEEEEEECCcccceeeeEeecccCC
Confidence 99999999999999999873333446778999999999999999 799999999999999 5555 4677887 999
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCC------------------CCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT------------------MGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~------------------~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
.|.+++|++ ++.+|++++.|+.|++||+.. ......+ .|...|.+++|+|++++|++++
T Consensus 148 ~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~sp~~~~l~~~~ 224 (377)
T 3dwl_C 148 TILSLDWHP--NNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGGWVHAVGFSPSGNALAYAG 224 (377)
T ss_dssp CEEEEEECT--TSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSSSEEEEEECTTSSCEEEEE
T ss_pred CeEEEEEcC--CCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCceEEEEEECCCCCEEEEEe
Confidence 999999987 668999999999999999853 3334445 7788899999999999999998
Q ss_pred cCCCCCceEEEEeCCCCee----EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee--------------
Q 001319 558 TSKDGDSFLVEWNESEGTI----KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI-------------- 619 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~-------------- 619 (1101)
. ++.|++||+.+++. +..+.+|.. .+.+++|+|++++|++++.++.+ +|+......
T Consensus 225 ~----d~~i~iwd~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 298 (377)
T 3dwl_C 225 H----DSSVTIAYPSAPEQPPRALITVKLSQL-PLRSLLWANESAIVAAGYNYSPI-LLQGNESGWAHTRDLDAGTSKTS 298 (377)
T ss_dssp T----TTEEC-CEECSTTSCEEECCCEECSSS-CEEEEEEEETTEEEEEESSSSEE-EECCCC---CCSBCCCSCCCCCC
T ss_pred C----CCcEEEEECCCCCCcceeeEeecCCCC-ceEEEEEcCCCCEEEEEcCCcEE-EEEeCCCceEEEeeecccccccc
Confidence 5 89999999999887 778888876 79999999999998888766665 666542110
Q ss_pred -------------------------eEeecc-----------CCCCCCCCeeEEecC-CC---EEEEEEcCCcEEEEEc
Q 001319 620 -------------------------LTSTDA-----------EGGLPNLPRLRFSKE-GN---LLAVTTADNGFKILAN 658 (1101)
Q Consensus 620 -------------------------~~~~~~-----------~~~~~~v~~v~~s~~-g~---~l~~~~~d~~i~iwd~ 658 (1101)
...... ..|...|.++++.+. +. .|++++.||.|++||+
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~Dg~i~iWdl 377 (377)
T 3dwl_C 299 FTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGTDGRVVLWTL 377 (377)
T ss_dssp BSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEETTSEEEEECC
T ss_pred cccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecCCCcEEEecC
Confidence 000000 014557888887654 33 6999999999999985
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-32 Score=313.88 Aligned_cols=369 Identities=13% Similarity=0.128 Sum_probs=252.8
Q ss_pred eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEEEEECCCeEEEEeecCCcccc
Q 001319 364 SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLR 442 (1101)
Q Consensus 364 ~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~ 442 (1101)
..++.+++|+++.++... ++.+|.+.|.+++|+| ++++||+|+.||.|++||+.+++...
T Consensus 20 ~~~~~~~v~~~~~~~~~~-------------------~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~ 80 (408)
T 4a11_B 20 RAESTRRVLGLELNKDRD-------------------VERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQS 80 (408)
T ss_dssp HHHHHHHHHTEEECTTEE-------------------ECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSS
T ss_pred eccCcceeeccccCccee-------------------eeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccc
Confidence 356678888887765443 4778999999999999 99999999999999999999987665
Q ss_pred cceee----------ecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCC-Ccc
Q 001319 443 QHSQI----------DAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE-NIQ 509 (1101)
Q Consensus 443 ~~~~l----------~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~-~~~ 509 (1101)
..... .+|...|.+++|+| ++. +|++++.|+.|++|| .+++.+..+. +...+.++++.+.. ++.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--~l~s~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 157 (408)
T 4a11_B 81 YYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTG--MFTSSSFDKTLKVWDTNTLQTADVFN-FEETVYSHHMSPVSTKHC 157 (408)
T ss_dssp CEEECEEEEECTTCTTCCSSCEEEEEECTTCTT--CEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECSSCSSCC
T ss_pred eEeccccccccccccccCCCcEEEEEEccCCCc--EEEEEeCCCeEEEeeCCCCccceecc-CCCceeeeEeecCCCCCc
Confidence 32211 25999999999999 555 799999999999999 7777776666 77889999988753 456
Q ss_pred EEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCE-EEEeecCCCCCceEEEEeCCCCe-eEEEecccCCcc
Q 001319 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR-LFSCGTSKDGDSFLVEWNESEGT-IKRTYAGFRKKS 587 (1101)
Q Consensus 510 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~~~~~~~i~iwd~~~~~-~~~~~~~~~~~~ 587 (1101)
++++++.|+.|++||++++.....+..+...|.+++|+|++++ +++++. ++.|++||++++. ....+..+...
T Consensus 158 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~- 232 (408)
T 4a11_B 158 LVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASA----DSRVKLWDVRRASGCLITLDQHNGK- 232 (408)
T ss_dssp EEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEET----TSCEEEEETTCSSCCSEECCTTTTC-
T ss_pred EEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcC----CCcEEEEECCCCCcccccccccccc-
Confidence 9999999999999999999988889999999999999999995 777775 8899999998764 33333322210
Q ss_pred eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccccccccc
Q 001319 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRA 667 (1101)
Q Consensus 588 v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~ 667 (1101)
......... ..+...|.+++|+|++++|++++.|+.|++||+.++... ..
T Consensus 233 ---------------------------~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~-~~ 282 (408)
T 4a11_B 233 ---------------------------KSQAVESAN--TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT-LV 282 (408)
T ss_dssp ---------------------------SCCCTTTSS--CSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBC-CC
T ss_pred ---------------------------cceeecccc--ccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccc-ee
Confidence 000011111 233457999999999999999999999999999876221 11
Q ss_pred ccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeec
Q 001319 668 VENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTN 747 (1101)
Q Consensus 668 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~ 747 (1101)
.......
T Consensus 283 ~~~~~~~------------------------------------------------------------------------- 289 (408)
T 4a11_B 283 NYGKVCN------------------------------------------------------------------------- 289 (408)
T ss_dssp CCCCCCC-------------------------------------------------------------------------
T ss_pred ccccccc-------------------------------------------------------------------------
Confidence 1000000
Q ss_pred CcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeE
Q 001319 748 SAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKI 827 (1101)
Q Consensus 748 ~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i 827 (1101)
. ..............+.+++++.++.|
T Consensus 290 -------~----------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~i 316 (408)
T 4a11_B 290 -------N----------------------------------------------SKKGLKFTVSCGCSSEFVFVPYGSTI 316 (408)
T ss_dssp -------C----------------------------------------------CSSCCCCEECCSSSSCEEEEEETTEE
T ss_pred -------c----------------------------------------------ccccceeEEecCCCceEEEEecCCEE
Confidence 0 00111112222334555566669999
Q ss_pred EEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcC-CCCEEEEE
Q 001319 828 SLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST-SLNILVSS 906 (1101)
Q Consensus 828 ~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~-d~~~l~s~ 906 (1101)
++||+.+++.+..+.+|...|++++|+| ++++|++|+.||.|++||+.+++.+.....+... ..+.+ +...+.+.
T Consensus 317 ~v~d~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 392 (408)
T 4a11_B 317 AVYTVYSGEQITMLKGHYKTVDCCVFQS-NFQELYSGSRDCNILAWVPSLYEPVPDDDETTTK---SQLNPAFEDAWSSS 392 (408)
T ss_dssp EEEETTTCCEEEEECCCSSCEEEEEEET-TTTEEEEEETTSCEEEEEECC------------------------------
T ss_pred EEEECcCCcceeeeccCCCeEEEEEEcC-CCCEEEEECCCCeEEEEeCCCCCccCCCCceEec---cccccccceeeccc
Confidence 9999999999999999999999999999 8999999999999999999999877655443322 22333 33455677
Q ss_pred eCCCcEEEEECCC
Q 001319 907 GADAQLCVWSIDT 919 (1101)
Q Consensus 907 s~Dg~v~lwd~~~ 919 (1101)
+.|+.+++|+...
T Consensus 393 ~~~~~~~~W~~~~ 405 (408)
T 4a11_B 393 DEEGGTSAWSHPQ 405 (408)
T ss_dssp -------------
T ss_pred CccCceeecCCcc
Confidence 8899999998754
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-33 Score=317.78 Aligned_cols=315 Identities=16% Similarity=0.269 Sum_probs=239.4
Q ss_pred eecccCcEEEEEEecC---CCceEEEEecCCceEEEEE-cCCceeEEeec-----CCcCeEEEecccCCC--ccEEEEec
Q 001319 447 IDAHVGAVNDLAFAYP---NKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-----HEAPVYSICPHHKEN--IQFIFSTA 515 (1101)
Q Consensus 447 l~~h~~~V~~l~~s~d---~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~-----h~~~v~~v~~~~~~~--~~~l~s~~ 515 (1101)
..+|.+.|++++|+|+ +.. .+++++.++.|++|| .+++.+..+.. |...|.+++|+++.+ +.+|++++
T Consensus 14 ~~~h~~~v~~i~~~p~~~~~~~-~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~ 92 (366)
T 3k26_A 14 KEDHNQPLFGVQFNWHSKEGDP-LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAG 92 (366)
T ss_dssp ECTTCSCEEEEEECTTCCTTSC-EEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEE
T ss_pred ecCCCCceEEEEEecccCCCCc-eEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEec
Confidence 4589999999999985 444 455555577999999 76777766654 557899999998643 67999999
Q ss_pred cCCeEEEEecCCCCeeeeccCCCCceEEEEEcc-CCCEEEEeecCCCCCceEEEEeCCCCeeEEEe---cccCCcceEEE
Q 001319 516 IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY---AGFRKKSNGVV 591 (1101)
Q Consensus 516 ~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~---~~~~~~~v~~~ 591 (1101)
.||.|++||+.+.+....+..+...|.+++|+| ++.++++++. ++.|++||+.+++.+..+ .+|.. .+.++
T Consensus 93 ~dg~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~-~v~~~ 167 (366)
T 3k26_A 93 SRGIIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSK----DHALRLWNIQTDTLVAIFGGVEGHRD-EVLSA 167 (366)
T ss_dssp TTCEEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEET----TSCEEEEETTTTEEEEEECSTTSCSS-CEEEE
T ss_pred CCCEEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeC----CCeEEEEEeecCeEEEEecccccccC-ceeEE
Confidence 999999999999999988989999999999999 9999999986 899999999999999988 56655 79999
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCC
Q 001319 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENP 671 (1101)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~ 671 (1101)
+|+|++++|++++.||.|++||+.+++....+.. .+.++|++..+...........+ .
T Consensus 168 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~---------~----- 225 (366)
T 3k26_A 168 DYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKE--------SYDYNPNKTNRPFISQKIHFPDF---------S----- 225 (366)
T ss_dssp EECTTSSEEEEEETTSCEEEEESCSHHHHHHHHH--------HHTCCGGGCSSCCCCEEECCCSE---------E-----
T ss_pred EECCCCCEEEEecCCCCEEEEECCCCccccccce--------eEEecCCCCcccccceeeccCcc---------c-----
Confidence 9999999999999999999999988766544432 23334433222111000000000 0
Q ss_pred CcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCccc
Q 001319 672 PFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVG 751 (1101)
Q Consensus 672 ~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~ 751 (1101)
. ...
T Consensus 226 ---------------------------------------------------------~---~~~---------------- 229 (366)
T 3k26_A 226 ---------------------------------------------------------T---RDI---------------- 229 (366)
T ss_dssp ---------------------------------------------------------E---CSS----------------
T ss_pred ---------------------------------------------------------c---ccC----------------
Confidence 0 011
Q ss_pred EEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEE
Q 001319 752 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLF 830 (1101)
Q Consensus 752 l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vw 830 (1101)
|...|.+++|+ ++++++++ ||.|++|
T Consensus 230 ---------------------------------------------------~~~~v~~~~~~--~~~l~~~~~d~~i~~w 256 (366)
T 3k26_A 230 ---------------------------------------------------HRNYVDCVRWL--GDLILSKSCENAIVCW 256 (366)
T ss_dssp ---------------------------------------------------CSSCCCEEEEE--TTEEEEECSSSEEEEE
T ss_pred ---------------------------------------------------CcceEEEEEEc--CCEEEEEecCCEEEEE
Confidence 44445555554 34444444 4555555
Q ss_pred ECCCc--------------eEEEEeeCCCCCeeEEEEecCC--CCEEEEEeCCCcEEEEEeecce----EEEeeccC--C
Q 001319 831 NMMTF--------------KVMTTFMSPPPASTFLAFHPQD--NNIIAIGTEDSTIHIYNVRVDE----VKSKLKGH--Q 888 (1101)
Q Consensus 831 d~~~~--------------~~~~~~~~~~~~i~~l~~s~~~--~~~la~g~~dg~v~iwd~~~~~----~~~~~~~h--~ 888 (1101)
|+.++ ..+..+..|...|++++|+| + +++|++|+.||.|++||+.+++ ....+.+| .
T Consensus 257 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 335 (366)
T 3k26_A 257 KPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSM-DFWQKMLALGNQVGKLYVWDLEVEDPHKAKCTTLTHHKCG 335 (366)
T ss_dssp EESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEE-CTTSSEEEEECTTSCEEEEECCSSSGGGCEEEEECCTTCC
T ss_pred eCCCccccccccccCCcchheeccccccCCcEEEEEEcC-CCCCcEEEEEecCCcEEEEECCCCCCccccceEEcccccC
Confidence 55443 34677888999999999999 7 9999999999999999999875 44577777 7
Q ss_pred CCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 889 KRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
..|++++|+|++++|++++.||.|++||+.+
T Consensus 336 ~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 336 AAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred CceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 9999999999999999999999999999863
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-33 Score=322.81 Aligned_cols=301 Identities=15% Similarity=0.198 Sum_probs=232.3
Q ss_pred EEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCCEEEEEEcCCcEEE
Q 001319 578 RTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVTTADNGFKI 655 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~~~d~~i~i 655 (1101)
....+|.. .|++++|+| +++.|++|+.||.|+|||+.+++....+...+|...|.+++|+| ++.+|++++.||+|++
T Consensus 113 ~~~~~~~~-~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~i 191 (435)
T 4e54_B 113 QKAAPFDR-RATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRL 191 (435)
T ss_dssp CEEEECSS-CEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEE
T ss_pred ccCCCCCC-CEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEE
Confidence 34445554 799999999 46789999999999999999887766666666677999999998 7899999999999999
Q ss_pred EEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCC
Q 001319 656 LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTD 735 (1101)
Q Consensus 656 wd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 735 (1101)
||+.+.. ...+
T Consensus 192 wd~~~~~--~~~~------------------------------------------------------------------- 202 (435)
T 4e54_B 192 QDFKGNI--LRVF------------------------------------------------------------------- 202 (435)
T ss_dssp EETTSCE--EEEE-------------------------------------------------------------------
T ss_pred eeccCCc--eeEE-------------------------------------------------------------------
Confidence 9986431 0000
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
.... .+...+.+++|+|+
T Consensus 203 ------------------~~~~--------------------------------------------~~~~~~~~~~~~~~ 220 (435)
T 4e54_B 203 ------------------ASSD--------------------------------------------TINIWFCSLDVSAS 220 (435)
T ss_dssp ------------------ECCS--------------------------------------------SCSCCCCCEEEETT
T ss_pred ------------------eccC--------------------------------------------CCCccEEEEEECCC
Confidence 0000 13445678899999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE---eeccCCCCe
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS---KLKGHQKRI 891 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~---~~~~h~~~V 891 (1101)
+++|++|+ ||.|++||+. ++.+..+.+|...|++++|+|.+..+|++|+.|+.|+|||+.+.+... ...+|...|
T Consensus 221 ~~~l~~g~~dg~i~~wd~~-~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v 299 (435)
T 4e54_B 221 SRMVVTGDNVGNVILLNMD-GKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPV 299 (435)
T ss_dssp TTEEEEECSSSBEEEEESS-SCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCE
T ss_pred CCEEEEEeCCCcEeeeccC-cceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccc
Confidence 99999998 8999999986 456677889999999999999555689999999999999998765443 336799999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-------------CCe
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-------------ETQ 958 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-------------d~~ 958 (1101)
++++|+|+|++|++++.||+|++||+.+++.......+..............|+|++..++++. ++.
T Consensus 300 ~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 379 (435)
T 4e54_B 300 NAACFSPDGARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWHPRYNLIVVGRYPDPNFKSCTPYELRT 379 (435)
T ss_dssp EECCBCTTSSEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEECSSSSCEEEECCCCTTSCCSSTTCCCC
T ss_pred cceeECCCCCeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEcCCCCEEEEEEcCCCCeEEEEecCCCE
Confidence 9999999999999999999999999999876544322221111112344566777777766642 357
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEE-EEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCA-VYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v-~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
|++||..+++.+..+..++ ...|.++ +|+|||++|++|+ |+.|+|||+++++.
T Consensus 380 i~iwd~~~g~~~~~l~~~~--~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk~ 433 (435)
T 4e54_B 380 IDVFDGNSGKMMCQLYDPE--SSGISSLNEFNPMGDTLASAM-GYHILIWSQQEART 433 (435)
T ss_dssp EEEECSSSCCEEEEECCSS--CCCCCCEEEECTTSSCEEEEC-SSEEEECCCC----
T ss_pred EEEEECCCCcEEEEEeCCC--CCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCee
Confidence 9999999999988876543 7778887 6999999999886 88999999998865
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-33 Score=320.50 Aligned_cols=298 Identities=13% Similarity=0.191 Sum_probs=241.8
Q ss_pred CCcceeEee--cCCCcEEEEEEec-CCceEEEEEeccCcEEEEecCC---CceeccccceeecccccCccccccccccCC
Q 001319 333 LPRTVAVSL--HQGSTVISMDFHP-SHQTLLLVGSSNGEITLWELAM---RDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 333 ~~~~~~~~~--~h~~~V~~v~fsp-dg~~llasg~~d~~i~iwd~~~---~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
....+...+ +|.+.|++++|+| +|+ +||+|+.||.|+|||+.+ +.... .....+|.
T Consensus 50 ~~g~~~~~~~~~h~~~V~~~~~s~~~~~-~l~s~s~dg~v~vwd~~~~~~~~~~~-----------------~~~~~~h~ 111 (437)
T 3gre_A 50 LRGKLIATLMENEPNSITSSAVSPGETP-YLITGSDQGVIKIWNLKEIIVGEVYS-----------------SSLTYDCS 111 (437)
T ss_dssp CCCCEEEEECTTTTSCEEEEEEECSSSC-EEEEEETTSEEEEEEHHHHHTTCCCS-----------------CSEEEECS
T ss_pred ccceEEeeeccCCCCceEEEEECCCCCC-EEEEecCCceEEEeECcccccCcccc-----------------eeeeccCC
Confidence 334555555 4889999999999 998 569999999999999977 33111 01122599
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeec---CCcccccce-----ee--ec--ccCcEEEEE--EecCCCceEEEEec
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYA---GSNDLRQHS-----QI--DA--HVGAVNDLA--FAYPNKLLCVVTCG 472 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~---~~~~~~~~~-----~l--~~--h~~~V~~l~--~s~d~~~~~l~s~~ 472 (1101)
..|.+++|+|++++|++|+.||.|++||+. +++...... .+ .. +...+.++. +++++. ++++|+
T Consensus 112 ~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~ 189 (437)
T 3gre_A 112 STVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKS--LLVALT 189 (437)
T ss_dssp SCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCE--EEEEEE
T ss_pred CCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCC--EEEEEe
Confidence 999999999999999999999999999995 554433110 11 11 556677777 456777 899999
Q ss_pred CCceEEEEE-cCCceeEEeec--CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-CCCCceEEEEEc-
Q 001319 473 DDKLIKVWE-LSGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-APGHWCTTMLYS- 547 (1101)
Q Consensus 473 ~d~~v~iwd-~~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s- 547 (1101)
.|+.|++|| .+++++..+.+ |.+.|.+++|++ ++.+|++++.||.|++||+++......+. .+...|.+++++
T Consensus 190 ~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 267 (437)
T 3gre_A 190 NLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDE--ECCVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQ 267 (437)
T ss_dssp TTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECT--TSCEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECT
T ss_pred CCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECC--CCCEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEecc
Confidence 999999999 88999999998 899999999987 56899999999999999999988877765 566689999655
Q ss_pred ---cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC-------------------------CcceEEEEEeCCCCE
Q 001319 548 ---ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-------------------------KKSNGVVQFDTTQNH 599 (1101)
Q Consensus 548 ---~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-------------------------~~~v~~~~~~~~~~~ 599 (1101)
+++.++++++. ++.|++||+.+++.+..+.++. ...+.+++|+ ++++
T Consensus 268 ~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~ 342 (437)
T 3gre_A 268 FYGKNSVIVVGGSS----KTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKI 342 (437)
T ss_dssp TTCTTEEEEEEEST----TEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEE
T ss_pred ccCCCccEEEEEcC----CCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCCceEEEEEC-CceE
Confidence 56889999875 8999999999999998888652 2347788999 7789
Q ss_pred EEEEeCCCcEEEEECCCCeeeEeeccCC-----------------------------------CCCCCCeeEEecC--CC
Q 001319 600 FLAVGEDSQIKFWDMDNVNILTSTDAEG-----------------------------------GLPNLPRLRFSKE--GN 642 (1101)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----------------------------------~~~~v~~v~~s~~--g~ 642 (1101)
|++++.||.|++||+.+++....+..+. +...|.+++|+++ +.
T Consensus 343 l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~I~~i~~~~~~~~~ 422 (437)
T 3gre_A 343 LLTDEATSSIVMFSLNELSSSKAVISPSRFSDVFIPTQVTANLTMLLRKMKRTSTHSVDDSLYHHDIINSISTCEVDETP 422 (437)
T ss_dssp EEEEGGGTEEEEEETTCGGGCEEEECC--CCCEEEEEEEETTEEEEEEECC-------------CCCEEEEEEEESSSSE
T ss_pred EEecCCCCeEEEEECCCcccceEEecccccCceEEEEEeecceEEEEEecccccccccCcccccccceeeEeeeccCCce
Confidence 9999999999999999988777665421 4568999999998 78
Q ss_pred EEEEEEcCCcEEEEE
Q 001319 643 LLAVTTADNGFKILA 657 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd 657 (1101)
+|++|+.||.|++|+
T Consensus 423 ~l~s~~~dG~I~iw~ 437 (437)
T 3gre_A 423 LLVACDNSGLIGIFQ 437 (437)
T ss_dssp EEEEEETTSCEEEEC
T ss_pred EEEEEcCCceEEEeC
Confidence 999999999999994
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=311.87 Aligned_cols=292 Identities=14% Similarity=0.221 Sum_probs=244.0
Q ss_pred eEeecCCCc--EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 338 AVSLHQGST--VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 338 ~~~~~h~~~--V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
....+|.+. +.+++|++ ..+ ++++.|+.|+|||+.+++.... ....|...|.+++|+
T Consensus 85 ~~~~~~~~~~~~~~~~~s~--~~l-~~~~~d~~v~lw~~~~~~~~~~------------------~~~~~~~~v~~v~~s 143 (401)
T 4aez_A 85 LDAPGIIDDYYLNLLDWSN--LNV-VAVALERNVYVWNADSGSVSAL------------------AETDESTYVASVKWS 143 (401)
T ss_dssp EECTTCCCCTTCBCEEECT--TSE-EEEEETTEEEEEETTTCCEEEE------------------EECCTTCCEEEEEEC
T ss_pred eeCCCCcCCceEEEEeecC--CCE-EEEECCCeEEEeeCCCCcEeEe------------------eecCCCCCEEEEEEC
Confidence 333355555 44566665 445 5677999999999999876542 123388999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCceeEEeecC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGH 493 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~~~~~~~~h 493 (1101)
|+|++||+|+.||.|++||+.+++.+. .+.+|...|.+++|+ ++ ++++|+.|+.|++|| . .+..+..+.+|
T Consensus 144 ~~~~~l~~~~~dg~i~iwd~~~~~~~~---~~~~~~~~v~~~~~~--~~--~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 216 (401)
T 4aez_A 144 HDGSFLSVGLGNGLVDIYDVESQTKLR---TMAGHQARVGCLSWN--RH--VLSSGSRSGAIHHHDVRIANHQIGTLQGH 216 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTTCCEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECC
T ss_pred CCCCEEEEECCCCeEEEEECcCCeEEE---EecCCCCceEEEEEC--CC--EEEEEcCCCCEEEEecccCcceeeEEcCC
Confidence 999999999999999999999988666 677999999999994 45 799999999999999 4 57778899999
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
.+.|.+++|++ ++.+|++++.|+.|++||+.+......+..+...|.+++|+|++..+++.+. +..++.|++||+.+
T Consensus 217 ~~~v~~~~~~~--~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~-gs~d~~i~i~d~~~ 293 (401)
T 4aez_A 217 SSEVCGLAWRS--DGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGG-GTMDKQIHFWNAAT 293 (401)
T ss_dssp SSCEEEEEECT--TSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEEC-CTTTCEEEEEETTT
T ss_pred CCCeeEEEEcC--CCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEec-CCCCCEEEEEECCC
Confidence 99999999988 6689999999999999999999998888889999999999998765554331 11388999999999
Q ss_pred CeeEEEecccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 574 GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 574 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
++.+..+..+ ..+..++|+|+++++++++ .||.|++||+.+++........++...|.+++|+|+|++|++++.||
T Consensus 294 ~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~dg 371 (401)
T 4aez_A 294 GARVNTVDAG--SQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAASDE 371 (401)
T ss_dssp CCEEEEEECS--SCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECTTS
T ss_pred CCEEEEEeCC--CcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 9999888643 3699999999999999954 89999999999977766654445556899999999999999999999
Q ss_pred cEEEEEccccc
Q 001319 652 GFKILANAIGL 662 (1101)
Q Consensus 652 ~i~iwd~~~~~ 662 (1101)
.|++|++.++.
T Consensus 372 ~i~iw~~~~~~ 382 (401)
T 4aez_A 372 NLKFWRVYDGD 382 (401)
T ss_dssp EEEEEECCC--
T ss_pred cEEEEECCCCc
Confidence 99999998873
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-32 Score=333.76 Aligned_cols=307 Identities=19% Similarity=0.253 Sum_probs=246.1
Q ss_pred ccccCCccEEEEEEccCC-CEEEEEECCCeEEEEeecCCccc--ccceeeecccCcEEEEEEecCCCceEEEEecCCceE
Q 001319 401 IFKDVPISVSRVAWSPDG-NYVGVAFTKHLIQLYSYAGSNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg-~~las~~~d~~i~vwd~~~~~~~--~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v 477 (1101)
.+.+|.+.|++++|+|++ ++|++|+.|++|++||+.++... .....+.+|...|.+++|+|+++ +|++|+.|++|
T Consensus 377 ~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~--~l~sgs~Dg~v 454 (694)
T 3dm0_A 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQ--FALSGSWDGEL 454 (694)
T ss_dssp EEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSS--EEEEEETTSEE
T ss_pred hcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCC--EEEEEeCCCcE
Confidence 478999999999999974 79999999999999999875432 12236789999999999999999 89999999999
Q ss_pred EEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee---ccCCCCceEEEEEccCC--C
Q 001319 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADG--S 551 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~v~~~~~s~d~--~ 551 (1101)
++|| .+++++..+.+|...|.+++|++ ++.+|++++.|++|++||......... ...|...|.+++|+|++ .
T Consensus 455 ~vwd~~~~~~~~~~~~h~~~v~~~~~s~--~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 532 (694)
T 3dm0_A 455 RLWDLAAGVSTRRFVGHTKDVLSVAFSL--DNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP 532 (694)
T ss_dssp EEEETTTTEEEEEEECCSSCEEEEEECT--TSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSC
T ss_pred EEEECCCCcceeEEeCCCCCEEEEEEeC--CCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcc
Confidence 9999 88999999999999999999987 568999999999999999765433322 23566789999999987 5
Q ss_pred EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
.+++++. |+.|++||+.+++....+.+|.. .+.+++|+|++++|++++.||.|++||+.+++.+..+..+ ..
T Consensus 533 ~l~s~s~----d~~v~vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~sg~~Dg~i~iwd~~~~~~~~~~~~~---~~ 604 (694)
T 3dm0_A 533 TIVSASW----DKTVKVWNLSNCKLRSTLAGHTG-YVSTVAVSPDGSLCASGGKDGVVLLWDLAEGKKLYSLEAN---SV 604 (694)
T ss_dssp EEEEEET----TSCEEEEETTTCCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSBCEEEETTTTEEEECCBCS---SC
T ss_pred eEEEEeC----CCeEEEEECCCCcEEEEEcCCCC-CEEEEEEeCCCCEEEEEeCCCeEEEEECCCCceEEEecCC---Cc
Confidence 7888885 89999999999999999999987 8999999999999999999999999999999988777643 36
Q ss_pred CCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCC
Q 001319 632 LPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRP 711 (1101)
Q Consensus 632 v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~ 711 (1101)
|.+++|+|++.++++++ ++.|++||+.++ ..+..+..+..... ...+.
T Consensus 605 v~~~~~sp~~~~l~~~~-~~~i~iwd~~~~-~~~~~~~~~~~~~~--------~~~~~---------------------- 652 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAAT-EHGIKIWDLESK-SIVEDLKVDLKAEA--------EKADN---------------------- 652 (694)
T ss_dssp EEEEEECSSSSEEEEEE-TTEEEEEETTTT-EEEEEECCCCC--------------------------------------
T ss_pred EEEEEEcCCCcEEEEEc-CCCEEEEECCCC-CChhhhcccccccc--------ccccc----------------------
Confidence 89999999998888766 566999999877 33333221110000 00000
Q ss_pred CceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEec
Q 001319 712 SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWH 767 (1101)
Q Consensus 712 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~ 767 (1101)
.+. .....+...+++++|+|+|++|++++.||.|++|++.
T Consensus 653 ----------~~~------~~~~~~~~~~~~l~~spdg~~l~sgs~Dg~i~iW~i~ 692 (694)
T 3dm0_A 653 ----------SGP------AATKRKVIYCTSLNWSADGSTLFSGYTDGVIRVWGIG 692 (694)
T ss_dssp ------------------------CCCCEEEEEECTTSSEEEEEETTSEEEEEEC-
T ss_pred ----------ccc------ccCCceeEEeeeEEEcCCCCEEEEEcCCCeEEEEecc
Confidence 000 0001133457899999999999999999999999864
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-32 Score=297.26 Aligned_cols=251 Identities=19% Similarity=0.290 Sum_probs=211.7
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~ 478 (1101)
++.+|.+.|.+++|+|||++||+|+.|++|+|||+.++.. .....+.+|.+.|++++|+++ ++ +|+||+.|++|+
T Consensus 4 ~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~-~~~~~l~gH~~~V~~v~~s~~~~g~--~l~s~s~D~~v~ 80 (297)
T 2pm7_B 4 IANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVM 80 (297)
T ss_dssp ECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCB-CCCEEECCCSSCEEEEEECCGGGCS--EEEEEETTTEEE
T ss_pred eccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCc-EEEEEEccccCCeEEEEecCCCcCC--EEEEEcCCCEEE
Confidence 4778999999999999999999999999999999975421 122378899999999999864 77 899999999999
Q ss_pred EEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe--eeeccCCCCceEEEEEccC----
Q 001319 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSAD---- 549 (1101)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~d---- 549 (1101)
+|| .+++ .+..+.+|...|.+++|+|+.++.+|++++.|++|++||++.... ...+..|...|.+++|+|+
T Consensus 81 iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~ 160 (297)
T 2pm7_B 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (297)
T ss_dssp EEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC---
T ss_pred EEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCcccc
Confidence 999 6553 567788999999999999865578999999999999999987642 3556778889999999997
Q ss_pred ---------CCEEEEeecCCCCCceEEEEeCCCCe----eEEEecccCCcceEEEEEeCCC---CEEEEEeCCCcEEEEE
Q 001319 550 ---------GSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 550 ---------~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd 613 (1101)
+++|++++. |+.|++||+.+++ ....+.+|.. .|.+++|+|++ .+|++++.|++|++||
T Consensus 161 ~~~~~~~~~~~~l~sgs~----D~~v~lwd~~~~~~~~~~~~~l~~H~~-~V~~v~~sp~~~~~~~las~s~D~~v~iWd 235 (297)
T 2pm7_B 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYMASVSQDRTCIIWT 235 (297)
T ss_dssp ---------CCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccCCCCCCcceEEEEcC----CCcEEEEEEcCCCceEEEEEEecCCCC-ceEEEEECCCCCCceEEEEEECCCcEEEEE
Confidence 578999986 8999999998765 6677888877 89999999984 7899999999999999
Q ss_pred CCCCe---eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+.+.. ....+....+...|.+++|+|+|++|++++.|+.|++|+..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred eCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 97643 12223223345578999999999999999999999999975
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-32 Score=310.19 Aligned_cols=281 Identities=15% Similarity=0.250 Sum_probs=240.4
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
-...|+||+++ +||+| .|++|+|||..+|+.... ..+.+|...|++|+|+|||++||+|+
T Consensus 107 y~~~l~wS~~n--~lAvg-ld~tV~lWd~~tg~~~~~-----------------~~~~~~~~~V~sv~fspdg~~lasgs 166 (420)
T 4gga_A 107 YLNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGT 166 (420)
T ss_dssp TCBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEE
T ss_pred cceeEEECCCC--EEEEE-eCCEEEEEECCCCCEEEE-----------------EEecCCCCcEEEEEECCCCCEEEEEE
Confidence 46789999875 66877 599999999999987642 12567889999999999999999999
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEEecc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
.||+|+|||+.+++.++ .+.+|...|.+++|+ +. ++++|+.|+.+++|| .....+..+.+|...+..+.+.
T Consensus 167 ~Dg~v~iWd~~~~~~~~---~~~~h~~~v~~~s~~--~~--~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~~~ 239 (420)
T 4gga_A 167 SSAEVQLWDVQQQKRLR---NMTSHSARVGSLSWN--SY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239 (420)
T ss_dssp TTSCEEEEETTTTEEEE---EECCCSSCEEEEEEE--TT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred CCCeEEEEEcCCCcEEE---EEeCCCCceEEEeeC--CC--EEEEEeCCCceeEeeecccceeeEEecccccceeeeeec
Confidence 99999999999998776 688999999998885 55 799999999999999 4456678899999999999997
Q ss_pred cCCCccEEEEeccCCeEEEEecCCCCe----eeeccCCCCceEEEEEccCCCEE-EEeecCCCCCceEEEEeCCCCeeEE
Q 001319 504 HKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 504 ~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~l-~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
+ ++.++++++.|+.+++|+..+++. ......+...|.+++|+|++..+ ++++. ..|+.|++||+.++++..
T Consensus 240 ~--~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~g--s~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 240 P--DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp T--TSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEEC--TTTCEEEEEETTTTEEEE
T ss_pred C--CCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEee--cCCCEEEEEeCCccccce
Confidence 7 668999999999999999987653 34556777889999999976654 44432 248899999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEE
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iw 656 (1101)
.+..+. .+..+.|+++++.+++++ .|+.|++||+.+++++..+.+|. ..|.+++|+|+|++|++|+.|++|++|
T Consensus 316 ~~~~~~--~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~--~~V~~l~~spdg~~l~S~s~D~tvriW 391 (420)
T 4gga_A 316 AVDAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLW 391 (420)
T ss_dssp EEECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEE
T ss_pred eecccc--ceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEE
Confidence 988765 578899999999998865 79999999999999999988664 489999999999999999999999999
Q ss_pred Ecccc
Q 001319 657 ANAIG 661 (1101)
Q Consensus 657 d~~~~ 661 (1101)
|+...
T Consensus 392 dv~~~ 396 (420)
T 4gga_A 392 RCFEL 396 (420)
T ss_dssp CCSCS
T ss_pred ECCCC
Confidence 98754
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=311.54 Aligned_cols=313 Identities=8% Similarity=0.064 Sum_probs=250.1
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcc---cccceeeecccCcEEEEEEecC----C---CceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND---LRQHSQIDAHVGAVNDLAFAYP----N---KLLCVV 469 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~---~~~~~~l~~h~~~V~~l~~s~d----~---~~~~l~ 469 (1101)
.++.+|.+.|++++|+| ++||+|+.||.|++||+.+++. ......+.+|...|++++|+|+ + + +|+
T Consensus 10 ~~~~~h~~~i~~~~~~~--~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~g~~~~--~l~ 85 (397)
T 1sq9_A 10 NAGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELC--LVA 85 (397)
T ss_dssp EESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEE--EEE
T ss_pred hhhhhhhcCeEEEEecC--CeEEEEcCCCEEEEEECCCcccccCCCcceEEecCCCcEEEEEEecccccCCcccc--EEE
Confidence 35789999999999999 8999999999999999998871 1122367799999999999999 8 8 899
Q ss_pred EecCCceEEEEE-cCCce-----eEEeecC-----CcCeEEEecccC--CCccE-EEEeccCCeEEEEecCC------CC
Q 001319 470 TCGDDKLIKVWE-LSGRK-----LFNFEGH-----EAPVYSICPHHK--ENIQF-IFSTAIDGKIKAWLYDT------MG 529 (1101)
Q Consensus 470 s~~~d~~v~iwd-~~~~~-----~~~~~~h-----~~~v~~v~~~~~--~~~~~-l~s~~~d~~i~~wd~~~------~~ 529 (1101)
+++.|+.|++|| .+++. +..+.+| ...|.+++|++. +++.+ |++++.||.|++||+.+ ..
T Consensus 86 s~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 165 (397)
T 1sq9_A 86 TTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSL 165 (397)
T ss_dssp EEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHT
T ss_pred EEcCCCCEEEEEccCCcccccccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccc
Confidence 999999999999 77776 8888888 589999999822 36688 99999999999999988 55
Q ss_pred eee-----ec-------cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc---c---CCcceEEE
Q 001319 530 SRV-----DY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG---F---RKKSNGVV 591 (1101)
Q Consensus 530 ~~~-----~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~---~---~~~~v~~~ 591 (1101)
... .+ ..+...+.+++|+|++ ++++++. ++.|++||+.+++.+..+.. | .. .+.++
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~h~~~~~-~i~~i 239 (397)
T 1sq9_A 166 TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSV 239 (397)
T ss_dssp TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEE
T ss_pred eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeC----CCcEEEEECCCCceeEEEeccccccccCC-ccceE
Confidence 544 44 4467789999999999 8888875 89999999999999999988 6 55 89999
Q ss_pred EEeCCCCEEEEEeCC---CcEEEEECCCCeeeEeeccCC-----------CCCCCCeeEEecCCCEEEEEEcCCcEEEEE
Q 001319 592 QFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEG-----------GLPNLPRLRFSKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 592 ~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~-----------~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd 657 (1101)
+|+|++++|++++.| |.|++||+.+++.+..+.... +...|.+++|+|++++|++++.|+.|++||
T Consensus 240 ~~~~~~~~l~~~~~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 319 (397)
T 1sq9_A 240 KFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWD 319 (397)
T ss_dssp EECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEE
T ss_pred EECCCCCEEEEEecCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEE
Confidence 999999999999999 999999999999888887611 344799999999999999999999999999
Q ss_pred ccccccccccccCCCcc-cccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCC
Q 001319 658 NAIGLRSLRAVENPPFE-ALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDT 736 (1101)
Q Consensus 658 ~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (1101)
+.++ ..+..+...... ..... ...+.. .....|
T Consensus 320 ~~~~-~~~~~~~~~~~~~~~~~~------~~~g~~---------------------------------------~~~~~~ 353 (397)
T 1sq9_A 320 VKTK-ERITTLNMHCDDIEIEED------ILAVDE---------------------------------------HGDSLA 353 (397)
T ss_dssp TTTT-EEEEEEECCGGGCSSGGG------CCCBCT---------------------------------------TSCBCS
T ss_pred cCCC-ceeEEEecccCcccchhh------hhcccc---------------------------------------cccccc
Confidence 9876 333333210000 00000 000000 000225
Q ss_pred cccEEEEEeecCc----------ccEEEeecCCeEEEEEecC
Q 001319 737 SSKVVRLLYTNSA----------VGLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 737 ~~~i~~~~~s~~~----------~~l~~~~~dg~v~~w~~~~ 768 (1101)
...|.+++|+|++ ..+++++.||.|++|++..
T Consensus 354 ~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~ 395 (397)
T 1sq9_A 354 EPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAG 395 (397)
T ss_dssp SCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC
T ss_pred CCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCC
Confidence 8899999999998 7899999999999999764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-32 Score=294.57 Aligned_cols=250 Identities=14% Similarity=0.200 Sum_probs=206.8
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--C
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d 417 (1101)
..+|.+.|++++|+|+|+ +||+|+.|++|+|||+.++.... ...+.+|.+.|.+++|+| +
T Consensus 5 ~~~h~~~V~~~~~s~~g~-~las~s~D~~v~iw~~~~~~~~~-----------------~~~l~gH~~~V~~v~~s~~~~ 66 (297)
T 2pm7_B 5 ANAHNEMIHDAVMDYYGK-RMATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKF 66 (297)
T ss_dssp CCSCSSCEEEEEECTTSS-EEEEEETTSCEEEEEBCSSCBCC-----------------CEEECCCSSCEEEEEECCGGG
T ss_pred ccCCcCceEEEEECCCCC-EEEEEeCCCEEEEEecCCCCcEE-----------------EEEEccccCCeEEEEecCCCc
Confidence 346999999999999999 56999999999999997542110 124789999999999987 4
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCCc--eeEEeec
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEG 492 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~~--~~~~~~~ 492 (1101)
|++||+|+.|++|++||+.+++.. ....+.+|...|.+++|+|+ +. +|++++.|++|++|| .++. ....+.+
T Consensus 67 g~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~v~~v~~~p~~~g~--~l~s~s~d~~v~~wd~~~~~~~~~~~~~~ 143 (297)
T 2pm7_B 67 GTILASCSYDGKVMIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--MLLVASSDGKVSVVEFKENGTTSPIIIDA 143 (297)
T ss_dssp CSEEEEEETTTEEEEEEBSSSCBC-CCEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEEBCSSSCBCCEEEEC
T ss_pred CCEEEEEcCCCEEEEEEcCCCceE-EEEEeecCCCceeEEEeCcCCCCc--EEEEEECCCcEEEEEecCCCceeeeeeec
Confidence 899999999999999999987522 22357789999999999998 77 899999999999999 5442 2467789
Q ss_pred CCcCeEEEecccCC-----------CccEEEEeccCCeEEEEecCCCC----eeeeccCCCCceEEEEEccCC---CEEE
Q 001319 493 HEAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSADG---SRLF 554 (1101)
Q Consensus 493 h~~~v~~v~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~d~---~~l~ 554 (1101)
|...|.+++|+|.. ++.+|++++.|++|++||+++.. ....+..|...|.+++|+|++ .+|+
T Consensus 144 h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~la 223 (297)
T 2pm7_B 144 HAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMA 223 (297)
T ss_dssp CSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEE
T ss_pred ccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEE
Confidence 99999999998852 25799999999999999998766 445678899999999999995 7899
Q ss_pred EeecCCCCCceEEEEeCCCCe--e-EEEe--cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 555 SCGTSKDGDSFLVEWNESEGT--I-KRTY--AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~--~-~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
+++. |+.|++||+.++. . ...+ ..+.. .+..++|+|++++|++++.||.|++|+..
T Consensus 224 s~s~----D~~v~iWd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~las~~~D~~v~lw~~~ 284 (297)
T 2pm7_B 224 SVSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKEN 284 (297)
T ss_dssp EEET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEETTSCEEEEEEC
T ss_pred EEEC----CCcEEEEEeCCCCCccceeeeecccCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEEC
Confidence 9886 8999999987643 1 2233 34443 78999999999999999999999999976
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-31 Score=303.02 Aligned_cols=244 Identities=15% Similarity=0.135 Sum_probs=215.0
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc--ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+..|..+|.+++|+|||++||+|+.|+.|++||+.+++ .+. .+.+|...|++++|+|+++ +|++++.|+.|++
T Consensus 4 ~~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~l~~~~~dg~i~v 78 (372)
T 1k8k_C 4 HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVH---ELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYV 78 (372)
T ss_dssp EESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEE---EEECCSSCEEEEEEETTTT--EEEEEETTSCEEE
T ss_pred ecccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeee---eecCCCCcccEEEEeCCCC--EEEEEcCCCeEEE
Confidence 44589999999999999999999999999999999876 444 6789999999999999999 8999999999999
Q ss_pred EE-cCCceeE--EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe----eeeccCCCCceEEEEEccCCCE
Q 001319 480 WE-LSGRKLF--NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSADGSR 552 (1101)
Q Consensus 480 wd-~~~~~~~--~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~d~~~ 552 (1101)
|| .+++... .+.+|...|.+++|++ ++.+|++++.|+.|++||++.... ......+...|.+++|+|++++
T Consensus 79 wd~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (372)
T 1k8k_C 79 WTLKGRTWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVL 156 (372)
T ss_dssp EEEETTEEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSE
T ss_pred EECCCCeeeeeEEeecCCCceeEEEECC--CCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCE
Confidence 99 6666443 4467999999999987 568999999999999999988763 2333566789999999999999
Q ss_pred EEEeecCCCCCceEEEEeC------------------CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 553 LFSCGTSKDGDSFLVEWNE------------------SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~------------------~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
+++++. ++.|++||+ ..++.+..+.+|.. .+.+++|+|++++|++++.||.|++||+
T Consensus 157 l~~~~~----dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~~~d~~i~i~d~ 231 (372)
T 1k8k_C 157 LAAGSC----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADA 231 (372)
T ss_dssp EEEEET----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEG
T ss_pred EEEEcC----CCCEEEEEcccccccccccccccccccchhhheEecCCCCC-eEEEEEECCCCCEEEEEeCCCEEEEEEC
Confidence 999985 889999995 46788888888776 8999999999999999999999999999
Q ss_pred CCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
.+++.+..+..+. ..|.+++|+|++.+++++ .|+.|++|++.+
T Consensus 232 ~~~~~~~~~~~~~--~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 232 DKKMAVATLASET--LPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp GGTTEEEEEECSS--CCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred CCCceeEEEccCC--CCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 9999988887664 379999999999988887 899999999987
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-34 Score=316.81 Aligned_cols=315 Identities=10% Similarity=0.022 Sum_probs=248.0
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
-..+|.+++|||||+++|+++.|++|+ |.+.++ .+.+|...|.+++|+|+| .++.+.+|+.++
T Consensus 14 ~~~~v~sv~~SpDG~~iASas~D~TV~--d~~~~~------~l~gh~~~v~~V~FsPdg---------~~~~~~~~~~~~ 76 (588)
T 2j04_A 14 FEDWKNNLTWARDGTLYLTTFPDISIG--QPKYAK------DINCNSKNLFHVKEFPLE---------FENKLDFELAQQ 76 (588)
T ss_dssp CSSSSCCEEECTTSCEEEECSSSEEEE--EECCCS------CCSSBGGGTEEEEEECCC---------CCCTTTTSCCCS
T ss_pred hhccEEEEEECCCCCEEEEEcCCceee--cccccc------eecCCCccEEEEEECCCC---------CcceEEEEeCCC
Confidence 457999999999999999999999999 766654 346999999999999998 377777777555
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCC-----ceEEEEEccCCCEEEEeecC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH-----WCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~-----~v~~~~~s~d~~~l~~~~~~ 559 (1101)
..+..+ +|...|.+++|+| +|.+|++++.||.|++||.+. ....+. +.. .+.+++|||||++|++++.
T Consensus 77 ~~~~~~-~~~~~V~~vawSP--dG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~- 149 (588)
T 2j04_A 77 NGLLNS-QPVCYPRVCKPSP--IDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNE- 149 (588)
T ss_dssp SCSSTT-SCSCCEEEEEECS--SSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEET-
T ss_pred ceEeec-CCCCcEEEEEECC--CCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcC-
Confidence 444444 4588999999988 678999999999999999544 444444 443 4999999999999999986
Q ss_pred CCCCceEEEEeCCCCee-------EEEe----cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee---Eeecc
Q 001319 560 KDGDSFLVEWNESEGTI-------KRTY----AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL---TSTDA 625 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~-------~~~~----~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~---~~~~~ 625 (1101)
|++|++||+.++.. +.++ .+|.. .|.+++|+|+| +++++.|+.|++||+.++... .++..
T Consensus 150 ---DGtVkIWd~~~~~l~~~~~i~l~ti~~~~~gh~~-~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~ 223 (588)
T 2j04_A 150 ---DGELQFFSIRKNSENTPEFYFESSIRLSDAGSKD-WVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQN 223 (588)
T ss_dssp ---TSEEEEEECCCCTTTCCCCEEEEEEECSCTTCCC-CEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEEC
T ss_pred ---CCEEEEEECCCCccccccceeeeeeecccccccc-cEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecc
Confidence 99999999998853 5666 55554 89999999998 889999999999999887742 34421
Q ss_pred CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceec
Q 001319 626 EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVER 705 (1101)
Q Consensus 626 ~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~ 705 (1101)
.+...|.+++|+ |+.|++++ ++.|++||+.++......
T Consensus 224 -~h~~~V~svaFs--g~~LASa~-~~tIkLWd~~~~~~~~~~-------------------------------------- 261 (588)
T 2j04_A 224 -ASRRKITDLKIV--DYKVVLTC-PGYVHKIDLKNYSISSLK-------------------------------------- 261 (588)
T ss_dssp -CCSSCCCCEEEE--TTEEEEEC-SSEEEEEETTTTEEEEEE--------------------------------------
T ss_pred -cccCcEEEEEEE--CCEEEEEe-CCeEEEEECCCCeEEEEE--------------------------------------
Confidence 233479999999 68999887 699999998866221110
Q ss_pred cCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEe--ecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccc
Q 001319 706 SSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLY--TNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVP 783 (1101)
Q Consensus 706 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~ 783 (1101)
.+|...|..++| +|++..++++..+|+ ++|..+
T Consensus 262 ----------------------------~gh~~~V~~va~~~s~d~~~La~a~edG~-klw~~d---------------- 296 (588)
T 2j04_A 262 ----------------------------TGSLENFHIIPLNHEKESTILLMSNKTSY-KVLLED---------------- 296 (588)
T ss_dssp ----------------------------CSCCSCCCEEEETTCSSCEEEEECSSCEE-EEEESS----------------
T ss_pred ----------------------------cCCCceEEEEEeeeCCCCCEEEEEcCCCC-EEEeec----------------
Confidence 237788889999 999999999999999 999742
Q ss_pred cccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEE
Q 001319 784 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 863 (1101)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~ 863 (1101)
.++++||+..+++. |+++++|+..... ...+.+ ...|.+++||| ||+++|+
T Consensus 297 -------------------------~~~~spd~~l~a~~-d~~v~lW~~~g~~-l~~~~~-~~~I~~va~SP-dG~~lA~ 347 (588)
T 2j04_A 297 -------------------------ELHVTADNIIAPYL-EKKFKKWSTIWNE-FNNYET-TLVIHGISLSP-DGYSIAI 347 (588)
T ss_dssp -------------------------SEEEECCCSSHHHH-HHHHHHTTTTTTS-SSSSCC-EEEEEEEEECT-TSSEEEE
T ss_pred -------------------------cEEECCCceEEEEc-CCEEEEEECCCCc-eeeecc-ceEEEEEEECC-CCCEEEE
Confidence 25588888887775 7888888875443 333333 55688899999 8888887
Q ss_pred Ee
Q 001319 864 GT 865 (1101)
Q Consensus 864 g~ 865 (1101)
++
T Consensus 348 ~~ 349 (588)
T 2j04_A 348 VY 349 (588)
T ss_dssp EE
T ss_pred EE
Confidence 76
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-33 Score=315.94 Aligned_cols=242 Identities=14% Similarity=0.106 Sum_probs=200.8
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCC--cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS--NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~--~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
+..+.+.|.+++|+|||++||+|+.|+.|++||+.++ +.+. .+.+|.+.|++++|+|+++ +|++++.|++|++
T Consensus 7 ~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~---~~~~h~~~v~~~~~s~~~~--~l~s~s~d~~v~v 81 (377)
T 3dwl_C 7 LHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHAR---TFSDHDKIVTCVDWAPKSN--RIVTCSQDRNAYV 81 (377)
T ss_dssp EEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECC---CBCCCSSCEEEEEECTTTC--CEEEEETTSSEEE
T ss_pred EecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEE---EEecCCceEEEEEEeCCCC--EEEEEeCCCeEEE
Confidence 3446779999999999999999999999999999987 4444 6789999999999999998 7999999999999
Q ss_pred EE-cCCc---eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe---eeeccC-CCCceEEEEEccCCC
Q 001319 480 WE-LSGR---KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDA-PGHWCTTMLYSADGS 551 (1101)
Q Consensus 480 wd-~~~~---~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~-~~~~v~~~~~s~d~~ 551 (1101)
|| .+++ ....+.+|...|.+++|++ ++.+|++++.|+.|++||+++.+. ...+.. |...|.+++|+|+++
T Consensus 82 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 159 (377)
T 3dwl_C 82 YEKRPDGTWKQTLVLLRLNRAATFVRWSP--NEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNV 159 (377)
T ss_dssp C------CCCCEEECCCCSSCEEEEECCT--TSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSS
T ss_pred EEcCCCCceeeeeEecccCCceEEEEECC--CCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCC
Confidence 99 6665 6778889999999999988 668999999999999999998763 555666 888999999999999
Q ss_pred EEEEeecCCCCCceEEEEeCC------------------CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001319 552 RLFSCGTSKDGDSFLVEWNES------------------EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1101)
++++++. ++.|++||+. .++++..+ +|.. .+.+++|+|++++|++++.||.|++||
T Consensus 160 ~l~~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~sp~~~~l~~~~~d~~i~iwd 233 (377)
T 3dwl_C 160 LLAAGCA----DRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-PSGG-WVHAVGFSPSGNALAYAGHDSSVTIAY 233 (377)
T ss_dssp EEEEEES----SSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-CCSS-SEEEEEECTTSSCEEEEETTTEEC-CE
T ss_pred EEEEEeC----CCEEEEEEEEecccCCCccccccccccchhhhhhcc-cCCc-eEEEEEECCCCCEEEEEeCCCcEEEEE
Confidence 9999986 8899999985 35566666 6655 899999999999999999999999999
Q ss_pred CCCCee----eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 614 MDNVNI----LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 614 ~~~~~~----~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+.+++. +..+..+. ..|.+++|+|++++|++++.++.+ +|+..
T Consensus 234 ~~~~~~~~~~~~~~~~~~--~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~ 280 (377)
T 3dwl_C 234 PSAPEQPPRALITVKLSQ--LPLRSLLWANESAIVAAGYNYSPI-LLQGN 280 (377)
T ss_dssp ECSTTSCEEECCCEECSS--SCEEEEEEEETTEEEEEESSSSEE-EECCC
T ss_pred CCCCCCcceeeEeecCCC--CceEEEEEcCCCCEEEEEcCCcEE-EEEeC
Confidence 999877 56666554 479999999999999988766665 66654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-32 Score=317.09 Aligned_cols=298 Identities=14% Similarity=0.222 Sum_probs=231.8
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC------------cc
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP------------IS 408 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~------------~~ 408 (1101)
+.|.+.|++++|+|+|+ +||+|+.||.|+|||+.+++......... ......+.+|. ..
T Consensus 25 ~~~~~~V~~v~~s~~g~-~la~g~~dg~v~iw~~~~~~~~~~~~~~~--------~~~~~~~~~h~~~~~~~~~~~~~~~ 95 (447)
T 3dw8_B 25 VAEADIISTVEFNHSGE-LLATGDKGGRVVIFQQEQENKIQSHSRGE--------YNVYSTFQSHEPEFDYLKSLEIEEK 95 (447)
T ss_dssp CCGGGSEEEEEECSSSS-EEEEEETTSEEEEEEECC-----CCCCCC--------EEEEEEEECCCCEEEGGGTEEECCC
T ss_pred ccccCcEEEEEECCCCC-EEEEEcCCCeEEEEEecCCCCCCcccccc--------eeEecccccccccccccccccccCc
Confidence 45778999999999998 56899999999999998876311000000 00112467887 88
Q ss_pred EEEEEEccCC--CEEEEEECCCeEEEEeecCCccccc------------------------------------c-eeeec
Q 001319 409 VSRVAWSPDG--NYVGVAFTKHLIQLYSYAGSNDLRQ------------------------------------H-SQIDA 449 (1101)
Q Consensus 409 v~~~~~spdg--~~las~~~d~~i~vwd~~~~~~~~~------------------------------------~-~~l~~ 449 (1101)
|.+++|+|++ .+|++++.|++|++||+.+++.... . ....+
T Consensus 96 V~~l~~~~~~~~~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 175 (447)
T 3dw8_B 96 INKIRWLPQKNAAQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANA 175 (447)
T ss_dssp CCEEEECCCCSSSEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSC
T ss_pred eEEEEEcCCCCcceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccC
Confidence 9999999998 8999999999999999987443100 0 11358
Q ss_pred ccCcEEEEEEecCCCceEEEEecCCceEEEEE-c-CCceeE-------EeecCCcCeEEEecccCCCc-cEEEEeccCCe
Q 001319 450 HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L-SGRKLF-------NFEGHEAPVYSICPHHKENI-QFIFSTAIDGK 519 (1101)
Q Consensus 450 h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~-~~~~~~-------~~~~h~~~v~~v~~~~~~~~-~~l~s~~~d~~ 519 (1101)
|...|++++|+|+++ +|++| .|+.|++|| . .++.+. .+.+|...|.+++|+| ++ .+|++++.||.
T Consensus 176 h~~~v~~~~~~~~~~--~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p--~~~~~l~s~~~dg~ 250 (447)
T 3dw8_B 176 HTYHINSISINSDYE--TYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHP--NSCNTFVYSSSKGT 250 (447)
T ss_dssp CSSCCCEEEECTTSS--EEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECS--SCTTEEEEEETTSC
T ss_pred CCcceEEEEEcCCCC--EEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECC--CCCcEEEEEeCCCe
Confidence 999999999999999 78888 799999999 4 344444 3668999999999987 44 79999999999
Q ss_pred EEEEecCCCCe----eeeccCCCC------------ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-CeeEEEecc
Q 001319 520 IKAWLYDTMGS----RVDYDAPGH------------WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTIKRTYAG 582 (1101)
Q Consensus 520 i~~wd~~~~~~----~~~~~~~~~------------~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~ 582 (1101)
|++||+++... ...+..+.. .|.+++|+|+|++|++++ ++.|++||+.+ ++.+..+.+
T Consensus 251 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~~~v~iwd~~~~~~~~~~~~~ 325 (447)
T 3dw8_B 251 IRLCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----YLSVKVWDLNMENRPVETYQV 325 (447)
T ss_dssp EEEEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEE-----SSEEEEEETTCCSSCSCCEES
T ss_pred EEEEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEee-----CCeEEEEeCCCCccccceeec
Confidence 99999998876 566666665 899999999999999886 48999999997 888888888
Q ss_pred cCCcc--------------eEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC----------------------
Q 001319 583 FRKKS--------------NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE---------------------- 626 (1101)
Q Consensus 583 ~~~~~--------------v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~---------------------- 626 (1101)
|.... +..++|+|++++|++++.||.|++||+.+++.+......
T Consensus 326 ~~~~~~~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (447)
T 3dw8_B 326 HEYLRSKLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKK 405 (447)
T ss_dssp CGGGTTTHHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCT
T ss_pred cccccccccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccc
Confidence 75311 223899999999999999999999999998775422110
Q ss_pred --------CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 627 --------GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 627 --------~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.....|..++|+|++++|++++.++ +++|..
T Consensus 406 ~~~~~~~~~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~ 444 (447)
T 3dw8_B 406 DEISVDSLDFNKKILHTAWHPKENIIAVATTNN-LYIFQD 444 (447)
T ss_dssp TCEEGGGCCTTSCCCEEEECSSSSEEEEECSSC-EEEEEC
T ss_pred ccccccccccCCceeEEEECCCCCEEEEEecce-eeeecc
Confidence 1123678899999999999998775 777764
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-31 Score=290.55 Aligned_cols=281 Identities=15% Similarity=0.258 Sum_probs=235.0
Q ss_pred EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC
Q 001319 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~ 426 (1101)
..+|+||+++ +||+| .|++|+|||+.+++.+.. ..+.+|...|.+++|+|+|++||+|+.
T Consensus 28 ~~~l~WS~~~--~lAvg-~D~tV~iWd~~tg~~~~~-----------------~~~~~~~~~V~~v~~~~~~~~l~sgs~ 87 (318)
T 4ggc_A 28 LNLVDWSSGN--VLAVA-LDNSVYLWSASSGDILQL-----------------LQMEQPGEYISSVAWIKEGNYLAVGTS 87 (318)
T ss_dssp CBCEEECTTS--EEEEE-ETTEEEEEETTTCCEEEE-----------------EECCSTTCCEEEEEECTTSSEEEEEET
T ss_pred ceEEEECCCC--EEEEE-eCCEEEEEECCCCCEEEE-----------------EEecCCCCeEEEEEECCCCCEEEEEEC
Confidence 4679999987 56776 599999999999987642 125678899999999999999999999
Q ss_pred CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEeecCCcCeEEEeccc
Q 001319 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHH 504 (1101)
Q Consensus 427 d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~~~ 504 (1101)
||+|++||+++++.+. .+.+|...+.++.+ ++. .+++++.++.+++|+ .....+..+.+|...+..+.+.+
T Consensus 88 Dg~v~iw~~~~~~~~~---~~~~h~~~~~~~~~--~~~--~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (318)
T 4ggc_A 88 SAEVQLWDVQQQKRLR---NMTSHSARVGSLSW--NSY--ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAP 160 (318)
T ss_dssp TSEEEEEETTTTEEEE---EEECCSSCEEEEEE--ETT--EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECT
T ss_pred CCcEEEeecCCceeEE---EecCccceEEEeec--CCC--EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcC
Confidence 9999999999998776 67899998887665 455 799999999999999 44466788899999999999977
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCee----eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
++.++++++.|++|++||+.+++.. .....+...|.+++++|++..++.... ...++.|++||..........
T Consensus 161 --~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~-~~~~~~i~lwd~~~~~~~~~~ 237 (318)
T 4ggc_A 161 --DGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGG-GTSDRHIRIWNVCSGACLSAV 237 (318)
T ss_dssp --TSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEE-CTTTCEEEEEETTTCCEEEEE
T ss_pred --CCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEe-cCCCCEEEEEecccccccccc
Confidence 5689999999999999999876543 344556778999999998776543221 234789999999998877766
Q ss_pred cccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.... .+..+.|+++++.+++++ .|+.|++||+.+++.+..+..|. ..|.+++|+|+|++|++++.|++|++||+
T Consensus 238 ~~~~--~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~--~~V~~l~~spdg~~l~S~s~D~~v~iWd~ 313 (318)
T 4ggc_A 238 DAHS--QVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHT--SRVLSLTMSPDGATVASAAADETLRLWRC 313 (318)
T ss_dssp ECSS--CEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCS--SCEEEEEECTTSSCEEEEETTTEEEEECC
T ss_pred ccee--eeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCC--CCEEEEEEcCCCCEEEEEecCCeEEEEEC
Confidence 5443 588899999999988765 79999999999999999988664 48999999999999999999999999998
Q ss_pred ccc
Q 001319 659 AIG 661 (1101)
Q Consensus 659 ~~~ 661 (1101)
.+.
T Consensus 314 ~~~ 316 (318)
T 4ggc_A 314 FEL 316 (318)
T ss_dssp SCC
T ss_pred CCC
Confidence 643
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=290.29 Aligned_cols=290 Identities=15% Similarity=0.190 Sum_probs=247.3
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
+.+..+.+|.+.|.+++| + ++.+|++++.||.|++||+.+......+..+...|.+++|+|+++++++++. ++
T Consensus 9 ~~~~~l~~h~~~v~~~~~-~--~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~----dg 81 (313)
T 3odt_A 9 QLSATLKGHDQDVRDVVA-V--DDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGK----DT 81 (313)
T ss_dssp EEEEEECCCSSCEEEEEE-E--ETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEET----TS
T ss_pred HHHHHhhCCCCCcEEEEe-c--CCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecC----CC
Confidence 567889999999999999 5 5579999999999999999988888888888999999999999999999986 88
Q ss_pred eEEEEeCCCC---eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-C
Q 001319 565 FLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-E 640 (1101)
Q Consensus 565 ~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~ 640 (1101)
.|++|++... +....+.+|.. .+.+++| +++++++++.||.|++|| .++....+..+. ..+.++.|+| +
T Consensus 82 ~i~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~--~~v~~~~~~~~~ 154 (313)
T 3odt_A 82 MINGVPLFATSGEDPLYTLIGHQG-NVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHN--ASVWDAKVVSFS 154 (313)
T ss_dssp CEEEEETTCCTTSCC-CEECCCSS-CEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCS--SCEEEEEEEETT
T ss_pred eEEEEEeeecCCCCcccchhhccc-CEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCC--CceeEEEEccCC
Confidence 9999998654 66777888776 7888888 578999999999999999 666777776554 4789999998 9
Q ss_pred CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEE
Q 001319 641 GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIV 720 (1101)
Q Consensus 641 g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 720 (1101)
+.++++++.|+.|++||.... ...+
T Consensus 155 ~~~l~~~~~d~~i~i~d~~~~---~~~~---------------------------------------------------- 179 (313)
T 3odt_A 155 ENKFLTASADKTIKLWQNDKV---IKTF---------------------------------------------------- 179 (313)
T ss_dssp TTEEEEEETTSCEEEEETTEE---EEEE----------------------------------------------------
T ss_pred CCEEEEEECCCCEEEEecCce---EEEE----------------------------------------------------
Confidence 999999999999999983211 0000
Q ss_pred eCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCC
Q 001319 721 DSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAG 800 (1101)
Q Consensus 721 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 800 (1101)
.
T Consensus 180 --------------------------------------------~----------------------------------- 180 (313)
T 3odt_A 180 --------------------------------------------S----------------------------------- 180 (313)
T ss_dssp --------------------------------------------C-----------------------------------
T ss_pred --------------------------------------------e-----------------------------------
Confidence 0
Q ss_pred CCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 801 VNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 801 ~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
..+...+.+++|+|++. +++++ +|.|++||+.+++.+..+..|...|++++|+| ++ .|++++.||.|++||+.+++
T Consensus 181 ~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~-~~-~l~~~~~dg~v~iwd~~~~~ 257 (313)
T 3odt_A 181 GIHNDVVRHLAVVDDGH-FISCSNDGLIKLVDMHTGDVLRTYEGHESFVYCIKLLP-NG-DIVSCGEDRTVRIWSKENGS 257 (313)
T ss_dssp SSCSSCEEEEEEEETTE-EEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECT-TS-CEEEEETTSEEEEECTTTCC
T ss_pred ccCcccEEEEEEcCCCe-EEEccCCCeEEEEECCchhhhhhhhcCCceEEEEEEec-CC-CEEEEecCCEEEEEECCCCc
Confidence 01667789999999998 55555 89999999999999999999999999999999 77 58899999999999999999
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV 926 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~ 926 (1101)
.+..+..|...|.+++|+|+++ +++++.||.|++||+.+++.....
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~iw~~~~~~~~~~~ 303 (313)
T 3odt_A 258 LKQVITLPAISIWSVDCMSNGD-IIVGSSDNLVRIFSQEKSRWASED 303 (313)
T ss_dssp EEEEEECSSSCEEEEEECTTSC-EEEEETTSCEEEEESCGGGCCC--
T ss_pred eeEEEeccCceEEEEEEccCCC-EEEEeCCCcEEEEeCCCCceeehh
Confidence 9999999999999999999998 667999999999999987765443
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7.3e-32 Score=301.68 Aligned_cols=293 Identities=11% Similarity=0.135 Sum_probs=209.7
Q ss_pred cCcEEEEEEecCCCceEEEEecCCc-------eEEEEE-cCCce----------eEEeecCCcCeEEEecccCCCccEEE
Q 001319 451 VGAVNDLAFAYPNKLLCVVTCGDDK-------LIKVWE-LSGRK----------LFNFEGHEAPVYSICPHHKENIQFIF 512 (1101)
Q Consensus 451 ~~~V~~l~~s~d~~~~~l~s~~~d~-------~v~iwd-~~~~~----------~~~~~~h~~~v~~v~~~~~~~~~~l~ 512 (1101)
..||++++|+||++ +|++|+.|. .|++|+ ..+.. ...+.+|...|.++++. +..++
T Consensus 14 g~PV~sv~fs~dg~--~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~----~~~~~ 87 (365)
T 4h5i_A 14 GYPAYGAKFLNNDT--LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS----KGIIL 87 (365)
T ss_dssp SSCEEEEEEEETTE--EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE----TTEEE
T ss_pred CCCEEEEEEeCCCc--EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC----CCEEE
Confidence 45899999999999 899987543 599999 33321 12456788888888763 34666
Q ss_pred EeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE----EEec----ccC
Q 001319 513 STAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK----RTYA----GFR 584 (1101)
Q Consensus 513 s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~----~~~~----~~~ 584 (1101)
++..++..++|... .++.+++|++...... .... ...
T Consensus 88 ~g~~~~~~~l~s~~-----------------------------------~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~ 132 (365)
T 4h5i_A 88 VGCNENSTKITQGK-----------------------------------GNKHLRKFKYDKVNDQLEFLTSVDFDASTNA 132 (365)
T ss_dssp EECCCCHHHHHHTS-----------------------------------CCCCEEEEEEETTTTEEEEEEEECSSCCCCT
T ss_pred EEECCCccEEEEec-----------------------------------CCCcEEEEEecCCCceEEEeeeeceeecCCc
Confidence 66544433333211 1223333333221100 0000 011
Q ss_pred CcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccc
Q 001319 585 KKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 585 ~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
...+.+++|+|||+++++++ .|++|++||+.+++.+..+..+ ..|.+++|+|||+++++++.+ .+.+|+..++.
T Consensus 133 ~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~---~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~ 208 (365)
T 4h5i_A 133 DDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR---GEVKDLHFSTDGKVVAYITGS-SLEVISTVTGS 208 (365)
T ss_dssp TCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS---SCCCEEEECTTSSEEEEECSS-CEEEEETTTCC
T ss_pred ccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC---CceEEEEEccCCceEEeccce-eEEEEEeccCc
Confidence 12477899999999987654 7899999999999998888633 369999999999999999855 56666655441
Q ss_pred cccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEE
Q 001319 663 RSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVR 742 (1101)
Q Consensus 663 ~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~ 742 (1101)
......
T Consensus 209 ~~~~~~-------------------------------------------------------------------------- 214 (365)
T 4h5i_A 209 CIARKT-------------------------------------------------------------------------- 214 (365)
T ss_dssp EEEEEC--------------------------------------------------------------------------
T ss_pred ceeeee--------------------------------------------------------------------------
Confidence 110000
Q ss_pred EEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE
Q 001319 743 LLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA 822 (1101)
Q Consensus 743 ~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~ 822 (1101)
. ..|...|.+++|+||+++++++
T Consensus 215 -------------------------------------------------------~--~~~~~~v~~v~fspdg~~l~~~ 237 (365)
T 4h5i_A 215 -------------------------------------------------------D--FDKNWSLSKINFIADDTVLIAA 237 (365)
T ss_dssp -------------------------------------------------------C--CCTTEEEEEEEEEETTEEEEEE
T ss_pred -------------------------------------------------------c--CCCCCCEEEEEEcCCCCEEEEE
Confidence 0 0155567777888888777777
Q ss_pred c-CC----eEEEEECCCceE----EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee-ccCCCCee
Q 001319 823 T-GG----KISLFNMMTFKV----MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGHQKRIT 892 (1101)
Q Consensus 823 ~-dg----~i~vwd~~~~~~----~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~-~~h~~~V~ 892 (1101)
+ ++ .+++|++..+.. ...+.+|...|++++|+| ++++||+|+.|++|+|||+.+++++..+ .+|...|+
T Consensus 238 s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Sp-dg~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 238 SLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDM-KGELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp EESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECT-TSCEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred ecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECC-CCCceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 6 44 477788765543 346778999999999999 9999999999999999999999999875 79999999
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 893 GLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
+|+|+|||++||||+.|++|+|||+...
T Consensus 317 ~v~fSpdg~~laS~S~D~tvrvw~ip~~ 344 (365)
T 4h5i_A 317 EVTISPDSTYVASVSAANTIHIIKLPLN 344 (365)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence 9999999999999999999999999653
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=300.24 Aligned_cols=311 Identities=13% Similarity=0.178 Sum_probs=240.8
Q ss_pred cccccCCccEEEEEEccCCCEEE-EEEC---CCeEEEEeecCCcccccceeeecccCcEEEEEEecC---CCceEEEEec
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVG-VAFT---KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP---NKLLCVVTCG 472 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~la-s~~~---d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d---~~~~~l~s~~ 472 (1101)
.++.+|...|.+++|+|++..++ +|+. |+.|++||+.+++.... ...+|...|.+++|+|+ +. +|++|+
T Consensus 12 ~~~~~h~~~v~~~~~~p~~~~l~~~~s~~~~d~~v~iw~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~~--~l~~~~ 87 (357)
T 3i2n_A 12 HIQKGFNYTVFDCKWVPCSAKFVTMGNFARGTGVIQLYEIQHGDLKLL--REIEKAKPIKCGTFGATSLQQR--YLATGD 87 (357)
T ss_dssp EEEEECSSCEEEEEECTTSSEEEEEEC--CCCEEEEEEEECSSSEEEE--EEEEESSCEEEEECTTCCTTTC--CEEEEE
T ss_pred hhccCCCCceEEEEEcCCCceEEEecCccCCCcEEEEEeCCCCcccce--eeecccCcEEEEEEcCCCCCCc--eEEEec
Confidence 45778999999999999996555 5555 89999999999875432 23379999999999999 57 799999
Q ss_pred CCceEEEEE-cCCc-eeEEeecCCcCeEEEeccc----CCCccEEEEeccCCeEEEEecCCCC-eeeeccCCCC----ce
Q 001319 473 DDKLIKVWE-LSGR-KLFNFEGHEAPVYSICPHH----KENIQFIFSTAIDGKIKAWLYDTMG-SRVDYDAPGH----WC 541 (1101)
Q Consensus 473 ~d~~v~iwd-~~~~-~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~~~d~~i~~wd~~~~~-~~~~~~~~~~----~v 541 (1101)
.|+.|++|| .+++ .+..+.+|...|.+++|.+ .+++.+|++++.|+.|++||+.+.. ....+..+.. .+
T Consensus 88 ~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~v 167 (357)
T 3i2n_A 88 FGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDC 167 (357)
T ss_dssp TTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECCCTTSCCCCE
T ss_pred CCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccccCCCCCCce
Confidence 999999999 7776 8899999999999996532 3477899999999999999999876 4555544433 78
Q ss_pred EEEE----EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC---CCCEEEEEeCCCcEEEEEC
Q 001319 542 TTML----YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT---TQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 542 ~~~~----~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+++ |+|+++++++++. ++.|++||+++++.... ..+.. .+.+++|+| +++++++++.||.|++||+
T Consensus 168 ~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~ 241 (357)
T 3i2n_A 168 WTVAFGNAYNQEERVVCAGYD----NGDIKLFDLRNMALRWE-TNIKN-GVCSLEFDRKDISMNKLVATSLEGKFHVFDM 241 (357)
T ss_dssp EEEEEECCCC-CCCEEEEEET----TSEEEEEETTTTEEEEE-EECSS-CEEEEEESCSSSSCCEEEEEESTTEEEEEEE
T ss_pred EEEEEEeccCCCCCEEEEEcc----CCeEEEEECccCceeee-cCCCC-ceEEEEcCCCCCCCCEEEEECCCCeEEEEeC
Confidence 8888 7899999999985 88999999999987555 34444 799999999 9999999999999999999
Q ss_pred CCCeeeEeec---cCCCCCCCCeeEEecCCC-EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccc
Q 001319 615 DNVNILTSTD---AEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSAS 690 (1101)
Q Consensus 615 ~~~~~~~~~~---~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 690 (1101)
.+++....+. ...+...|.+++|+|+++ ++++++.||.|++||+..+...... . +++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~-~-----------------~~g~ 303 (357)
T 3i2n_A 242 RTQHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKK-D-----------------SEGI 303 (357)
T ss_dssp EEEETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--C-C-----------------TTSC
T ss_pred cCCCcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccc-c-----------------CCCC
Confidence 8876655443 113345899999999998 8999999999999999866322110 0 0010
Q ss_pred cccccCCCCCcceeccCCCCCCceEEEEEEeCCC-eEEEEcCCCCCCcccEEEEEeecCcccEE-EeecCCeEEEEEecC
Q 001319 691 SAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQ-CRLVTMPESTDTSSKVVRLLYTNSAVGLL-ALGSNGVQKLWKWHR 768 (1101)
Q Consensus 691 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~i~~~~~s~~~~~l~-~~~~dg~v~~w~~~~ 768 (1101)
.... .+. .....+ ..|...|.+++|+|+++.++ +++.||.+++|++..
T Consensus 304 ~~~~---------------------------~~~~~~~~~~---~~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~ 353 (357)
T 3i2n_A 304 EMGV---------------------------AGSVSLLQNV---TLSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTK 353 (357)
T ss_dssp CCCC---------------------------CCEEEEEEEE---ECCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC
T ss_pred cccc---------------------------ccccceeecc---ccCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCC
Confidence 0000 000 001111 34888999999999999998 799999999999753
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-31 Score=294.95 Aligned_cols=279 Identities=10% Similarity=0.113 Sum_probs=236.5
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC-E
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN-Y 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~-~ 420 (1101)
+|.+.|++++|+|+|+ +|++|+.||.|+|||+.+++... ....+.+|...|.+++|+|+++ +
T Consensus 9 ~h~~~v~~~~~s~~~~-~l~~~~~d~~v~iw~~~~~~~~~----------------~~~~~~~~~~~v~~~~~~~~~~~~ 71 (342)
T 1yfq_A 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNV----------------DLLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEE----------------EEEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCcEEEEEEcCCCC-EEEEEcCCCeEEEEEeCCCCccc----------------cceeeeecCCceEEEEECCCCCcE
Confidence 5899999999999998 56889999999999998876211 0012457999999999999999 9
Q ss_pred EEEEECCCeEEEEee-cCCcccccceeeec--ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC---------Ccee
Q 001319 421 VGVAFTKHLIQLYSY-AGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS---------GRKL 487 (1101)
Q Consensus 421 las~~~d~~i~vwd~-~~~~~~~~~~~l~~--h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~---------~~~~ 487 (1101)
|++|+.||.|++||+ .+++. ..+.+ |...|.+++|+| ++ ++++++.|+.|++|| .+ ++++
T Consensus 72 l~~~~~dg~i~~wd~~~~~~~----~~~~~~~~~~~v~~l~~~~-~~--~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~ 144 (342)
T 1yfq_A 72 IYVGTVQGEILKVDLIGSPSF----QALTNNEANLGICRICKYG-DD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNS 144 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSE----EECBSCCCCSCEEEEEEET-TT--EEEEEETTSEEEEECHHHHTTBCEEEEESCS
T ss_pred EEEEcCCCeEEEEEeccCCce----EeccccCCCCceEEEEeCC-CC--EEEEEcCCCeEEEEcccccccccccccCCee
Confidence 999999999999999 88754 25778 999999999999 77 899999999999999 66 6667
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-CCe--eeeccCCCCceEEEEEcc-CCCEEEEeecCCCCC
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKDGD 563 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~~~ 563 (1101)
..+. |...|.+++|++ ++ +++++.|+.|++||++. ... ......+...+.+++|+| +++++++++. +
T Consensus 145 ~~~~-~~~~v~~~~~~~--~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~----d 215 (342)
T 1yfq_A 145 NNTK-VKNKIFTMDTNS--SR--LIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----D 215 (342)
T ss_dssp SSSS-SCCCEEEEEECS--SE--EEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----T
T ss_pred eEEe-eCCceEEEEecC--Cc--EEEEeCCCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEec----C
Confidence 7776 889999999976 43 99999999999999988 443 334455677899999999 9999999985 8
Q ss_pred ceEEEEeCCCC------eeEEEecccCC--------cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 564 SFLVEWNESEG------TIKRTYAGFRK--------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 564 ~~i~iwd~~~~------~~~~~~~~~~~--------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
+.|++|+.... +....+.+|.. ..+.+++|+|++++|++++.||.|++||+.+++.+..+..+. .
T Consensus 216 g~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~h-~ 294 (342)
T 1yfq_A 216 GRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN-E 294 (342)
T ss_dssp SEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS-S
T ss_pred CcEEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhccc-C
Confidence 99999999887 77788887743 378999999999999999999999999999999988877650 3
Q ss_pred CCCCeeEEecCCCEEEEEEcCCc-EEEE
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNG-FKIL 656 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~-i~iw 656 (1101)
..|.+++ |++++|++++.||. .+.+
T Consensus 295 ~~v~~~~--~~~~~l~s~s~Dg~~~~~~ 320 (342)
T 1yfq_A 295 DSVVKIA--CSDNILCLATSDDTFKTNA 320 (342)
T ss_dssp SEEEEEE--ECSSEEEEEEECTHHHHCS
T ss_pred CCceEec--CCCCeEEEEecCCcccccc
Confidence 3788888 99999999999998 4443
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.7e-32 Score=295.14 Aligned_cols=249 Identities=15% Similarity=0.208 Sum_probs=203.5
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--CC
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--DG 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--dg 418 (1101)
.+|.+.|++++|+|+|+ +||+|+.|++|+|||+.+++... ...+.+|.+.|.+++|+| ++
T Consensus 10 ~~H~~~V~~v~~s~~g~-~lasgs~D~~v~lwd~~~~~~~~-----------------~~~l~gH~~~V~~v~~~~~~~~ 71 (316)
T 3bg1_A 10 TSHEDMIHDAQMDYYGT-RLATCSSDRSVKIFDVRNGGQIL-----------------IADLRGHEGPVWQVAWAHPMYG 71 (316)
T ss_dssp ----CCEEEEEECGGGC-EEEEEETTTEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEECCGGGS
T ss_pred ccccCeEEEeeEcCCCC-EEEEEeCCCeEEEEEecCCCcEE-----------------EEEEcCCCccEEEEEeCCCCCC
Confidence 36999999999999998 56999999999999998765321 023789999999999986 48
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCCce---eEEeec
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRK---LFNFEG 492 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~~~---~~~~~~ 492 (1101)
++||+|+.|++|++||+.+++.. ....+.+|...|++++|+|+ +. +|++|+.|++|++|| ..+.. ...+.+
T Consensus 72 ~~l~s~s~D~~v~iWd~~~~~~~-~~~~~~~h~~~V~~v~~~p~~~g~--~lasgs~D~~i~lwd~~~~~~~~~~~~~~~ 148 (316)
T 3bg1_A 72 NILASCSYDRKVIIWREENGTWE-KSHEHAGHDSSVNSVCWAPHDYGL--ILACGSSDGAISLLTYTGEGQWEVKKINNA 148 (316)
T ss_dssp SCEEEEETTSCEEEECCSSSCCC-EEEEECCCSSCCCEEEECCTTTCS--CEEEECSSSCEEEEEECSSSCEEECCBTTS
T ss_pred CEEEEEECCCEEEEEECCCCcce-EEEEccCCCCceEEEEECCCCCCc--EEEEEcCCCCEEEEecCCCCCcceeeeecc
Confidence 99999999999999999987532 22357799999999999998 66 799999999999999 44422 355678
Q ss_pred CCcCeEEEecccCC---------------CccEEEEeccCCeEEEEecCCC---CeeeeccCCCCceEEEEEccCC----
Q 001319 493 HEAPVYSICPHHKE---------------NIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADG---- 550 (1101)
Q Consensus 493 h~~~v~~v~~~~~~---------------~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~d~---- 550 (1101)
|...|.+++|+|.. ++.+|++++.|++|++||++.. .....+..|...|.+++|+|++
T Consensus 149 h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~sp~~~~~~ 228 (316)
T 3bg1_A 149 HTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWAPSIGLPT 228 (316)
T ss_dssp SSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECCCCSSCSC
T ss_pred ccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecccCCCceEEEEecCCCCCCC
Confidence 99999999998752 1468999999999999999755 3455678888999999999987
Q ss_pred CEEEEeecCCCCCceEEEEeCCCC---e-eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 551 SRLFSCGTSKDGDSFLVEWNESEG---T-IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 551 ~~l~~~~~~~~~~~~i~iwd~~~~---~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
.+|++++. |+.|++|++.+. . ....+..|.. .+.+++|+|++++|++++.|+.|++|+..
T Consensus 229 ~~las~s~----D~~v~iw~~~~~~~~~~~~~~~~~~~~-~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 229 STIASCSQ----DGRVFIWTCDDASSNTWSPKLLHKFND-VVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp CEEEEEET----TCEEEEEECSSTTCCCCBCCEEEECSS-CEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred ceEEEEcC----CCeEEEEEccCccccchhhhhhhcCCC-cEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 78999986 999999998762 1 2233445544 89999999999999999999999999975
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-31 Score=303.03 Aligned_cols=272 Identities=19% Similarity=0.293 Sum_probs=236.6
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
+|...|.|++| +|+ ++++|+.||.|++||+.+++.+. .+.+|...|.+++| ++++|
T Consensus 131 ~~~~~v~~~~~--d~~-~l~~g~~dg~i~iwd~~~~~~~~-------------------~~~~h~~~v~~l~~--~~~~l 186 (435)
T 1p22_A 131 ETSKGVYCLQY--DDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 186 (435)
T ss_dssp SSCCCEEEEEC--CSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCcEEEEEE--CCC-EEEEEeCCCeEEEEeCCCCeEEE-------------------EEcCCCCcEEEEEE--CCCEE
Confidence 46778999888 677 56899999999999999887664 37789999999999 89999
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee---EEeecCCcCe
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL---FNFEGHEAPV 497 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~---~~~~~h~~~v 497 (1101)
++|+.||+|++||+.+++.+. .+.+|...|.+++|++ . .+++|+.|+.|++|| .++..+ ..+.+|...|
T Consensus 187 ~sg~~dg~i~vwd~~~~~~~~---~~~~h~~~v~~l~~~~--~--~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v 259 (435)
T 1p22_A 187 ITGSSDSTVRVWDVNTGEMLN---TLIHHCEAVLHLRFNN--G--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 259 (435)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCSCEEEEECCT--T--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred EEEcCCCeEEEEECCCCcEEE---EEcCCCCcEEEEEEcC--C--EEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcE
Confidence 999999999999999998766 6789999999999974 4 799999999999999 666655 6778999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.++++ ++.++++++.||.|++||+++++....+..+...|.++.+ ++.++++++. ++.|++||+.+++.+
T Consensus 260 ~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~----dg~i~iwd~~~~~~~ 329 (435)
T 1p22_A 260 NVVDF----DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSS----DNTIRLWDIECGACL 329 (435)
T ss_dssp EEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEET----TSCEEEEETTTCCEE
T ss_pred EEEEe----CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeC----CCeEEEEECCCCCEE
Confidence 99998 4579999999999999999999999999999999999998 5789999885 899999999999999
Q ss_pred EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe---------eeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN---------ILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~---------~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
..+.+|.. .+.+++| +++++++|+.||.|++||+.++. .+..+..+ ...|.+++| ++.+|++++
T Consensus 330 ~~~~~h~~-~v~~~~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~h--~~~v~~l~~--~~~~l~s~s 402 (435)
T 1p22_A 330 RVLEGHEE-LVRCIRF--DNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSS 402 (435)
T ss_dssp EEECCCSS-CEEEEEC--CSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECC
T ss_pred EEEeCCcC-cEEEEEe--cCCEEEEEeCCCcEEEEECCCCCCccccccchheeeccCC--CCCeEEEEe--CCCEEEEEe
Confidence 99999877 7888888 78899999999999999997765 66666655 447999999 788999999
Q ss_pred cCCcEEEEEcccc
Q 001319 649 ADNGFKILANAIG 661 (1101)
Q Consensus 649 ~d~~i~iwd~~~~ 661 (1101)
.||.|++||+.+.
T Consensus 403 ~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 403 HDDTILIWDFLND 415 (435)
T ss_dssp SSSEEEEEC----
T ss_pred CCCEEEEEECCCC
Confidence 9999999999876
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-31 Score=303.80 Aligned_cols=295 Identities=12% Similarity=0.150 Sum_probs=239.7
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc-CCCEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP-DGNYVGVA 424 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-dg~~las~ 424 (1101)
....++++|+...++++|+.||.|+||++........ ....+.+|.+.|.+++|+| ++++||+|
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~---------------~~~~~~~h~~~V~~~~~~p~~~~~l~s~ 100 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDK---------------NVPLVCGHTAPVLDIAWCPHNDNVIASG 100 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCT---------------TCCCBCCCSSCEEEEEECTTCTTEEEEE
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCC---------------CCceEecCCCCEEEEEeCCCCCCEEEEE
Confidence 3456899999876767788999999999966433210 1124788999999999999 99999999
Q ss_pred ECCCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe--ecCCcCe
Q 001319 425 FTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF--EGHEAPV 497 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~--~~h~~~v 497 (1101)
+.||+|+|||+.++... .....+.+|...|.+++|+|++.. +|++++.|++|++|| .+++.+..+ .+|.+.|
T Consensus 101 s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v 179 (402)
T 2aq5_A 101 SEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQN-VLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTI 179 (402)
T ss_dssp ETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTT-EEEEEETTSCEEEEETTTTEEEEEECTTTCCSCE
T ss_pred eCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCC-EEEEEcCCCEEEEEECCCCCccEEEecCCCCCce
Confidence 99999999999987432 223368899999999999999844 899999999999999 888999999 8899999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCc-eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.+++|++ ++.+|++++.|+.|++||+++++....+ ..+... +.+++|+|++++++++.. ...++.|++||+.+++
T Consensus 180 ~~~~~~~--~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~-~~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 180 YSVDWSR--DGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFS-RMSERQVALWDTKHLE 256 (402)
T ss_dssp EEEEECT--TSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEEC-TTCCEEEEEEETTBCS
T ss_pred EEEEECC--CCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEecc-CCCCceEEEEcCcccc
Confidence 9999987 6689999999999999999998888777 566654 899999999999998831 1138999999999876
Q ss_pred e-EEEecccCCcceEEEEEeCCCCEEEEE-eCCCcEEEEECCCCee-eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 576 I-KRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 576 ~-~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
. ...........+..++|+|++++++++ +.||.|++||+.+++. +..+..+.+...|.+++|+|++.++++ .++.
T Consensus 257 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~~~~v~~~~~sp~~~~~~s--~~~~ 334 (402)
T 2aq5_A 257 EPLSLQELDTSSGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSSKESQRGMGYMPKRGLEVN--KCEI 334 (402)
T ss_dssp SCSEEEECCCCSSCEEEEEETTTTEEEEEETTCSCEEEEEECSSTTCEEEEEEECCSSCCSEEEECCGGGSCGG--GTEE
T ss_pred CCceEEeccCCCceeEEEEcCCCCEEEEEEcCCCeEEEEEecCCCcceEeecccccCCcccceEEeccccccee--ccee
Confidence 4 333333333468899999999999764 5799999999998874 444444434558999999999988764 5679
Q ss_pred EEEEEcccc
Q 001319 653 FKILANAIG 661 (1101)
Q Consensus 653 i~iwd~~~~ 661 (1101)
+++|++.++
T Consensus 335 ~~~~~l~~~ 343 (402)
T 2aq5_A 335 ARFYKLHER 343 (402)
T ss_dssp EEEEEEETT
T ss_pred EEEEEcCCC
Confidence 999999865
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-32 Score=295.31 Aligned_cols=249 Identities=17% Similarity=0.292 Sum_probs=205.1
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~ 478 (1101)
++.+|.+.|++++|+|||++||+|+.|++|+|||+.+++.. ....+.+|.+.|++++|+++ ++ +|+||+.|++|+
T Consensus 8 ~~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~-~~~~l~gH~~~V~~v~~~~~~~~~--~l~s~s~D~~v~ 84 (316)
T 3bg1_A 8 VDTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQI-LIADLRGHEGPVWQVAWAHPMYGN--ILASCSYDRKVI 84 (316)
T ss_dssp ------CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEE-EEEEEECCSSCEEEEEECCGGGSS--CEEEEETTSCEE
T ss_pred ecccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcE-EEEEEcCCCccEEEEEeCCCCCCC--EEEEEECCCEEE
Confidence 47889999999999999999999999999999999987532 22368899999999999864 67 799999999999
Q ss_pred EEE-cCC--ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe---eeeccCCCCceEEEEEccC---
Q 001319 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSAD--- 549 (1101)
Q Consensus 479 iwd-~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d--- 549 (1101)
+|| .++ ..+..+.+|...|.+++|+|+.++.+|++++.|++|++||+..... ...+..|...+.+++|+|+
T Consensus 85 iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 164 (316)
T 3bg1_A 85 IWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVP 164 (316)
T ss_dssp EECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC
T ss_pred EEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCC
Confidence 999 665 4667888999999999999876678999999999999999987642 2445667778999999998
Q ss_pred --------------CCEEEEeecCCCCCceEEEEeCCCC---eeEEEecccCCcceEEEEEeCCC----CEEEEEeCCCc
Q 001319 550 --------------GSRLFSCGTSKDGDSFLVEWNESEG---TIKRTYAGFRKKSNGVVQFDTTQ----NHFLAVGEDSQ 608 (1101)
Q Consensus 550 --------------~~~l~~~~~~~~~~~~i~iwd~~~~---~~~~~~~~~~~~~v~~~~~~~~~----~~l~~~~~dg~ 608 (1101)
+++|++++. |+.|++||+..+ +....+.+|.. .|.+++|+|++ ++|++++.|++
T Consensus 165 ~~~~~~~~~~~~~~~~~l~sgs~----D~~v~lWd~~~~~~~~~~~~l~~h~~-~V~~v~~sp~~~~~~~~las~s~D~~ 239 (316)
T 3bg1_A 165 GSLIDHPSGQKPNYIKRFASGGC----DNLIKLWKEEEDGQWKEEQKLEAHSD-WVRDVAWAPSIGLPTSTIASCSQDGR 239 (316)
T ss_dssp ------CCSCCCCCCCBEECCBT----TSBCCEEEECTTSCEEEEECCBCCSS-CEEEEECCCCSSCSCCEEEEEETTCE
T ss_pred ccccccccccCccccceEEEecC----CCeEEEEEeCCCCccceeeecccCCC-ceEEEEecCCCCCCCceEEEEcCCCe
Confidence 468888875 899999999765 46677888877 89999999986 78999999999
Q ss_pred EEEEECCCC---e-eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 609 IKFWDMDNV---N-ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 609 i~iwd~~~~---~-~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
|++|++.+. . ....+..+ ...|.+++|+|++++|++++.|+.|++|+..
T Consensus 240 v~iw~~~~~~~~~~~~~~~~~~--~~~v~~v~~sp~g~~las~~~D~~v~lw~~~ 292 (316)
T 3bg1_A 240 VFIWTCDDASSNTWSPKLLHKF--NDVVWHVSWSITANILAVSGGDNKVTLWKES 292 (316)
T ss_dssp EEEEECSSTTCCCCBCCEEEEC--SSCEEEEEECTTTCCEEEEESSSCEEEEEEC
T ss_pred EEEEEccCccccchhhhhhhcC--CCcEEEEEEcCCCCEEEEEcCCCeEEEEEEC
Confidence 999998762 1 11222223 3479999999999999999999999999975
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-30 Score=295.51 Aligned_cols=281 Identities=15% Similarity=0.256 Sum_probs=230.0
Q ss_pred EEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeE
Q 001319 740 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 819 (1101)
Q Consensus 740 i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 819 (1101)
+..+.++ +..+++++.||.|++|++... ........ .|...|.+++|+|++++|
T Consensus 96 ~~~~~~s--~~~l~~~~~d~~v~lw~~~~~----------------------~~~~~~~~--~~~~~v~~v~~s~~~~~l 149 (401)
T 4aez_A 96 LNLLDWS--NLNVVAVALERNVYVWNADSG----------------------SVSALAET--DESTYVASVKWSHDGSFL 149 (401)
T ss_dssp CBCEEEC--TTSEEEEEETTEEEEEETTTC----------------------CEEEEEEC--CTTCCEEEEEECTTSSEE
T ss_pred EEEEeec--CCCEEEEECCCeEEEeeCCCC----------------------cEeEeeec--CCCCCEEEEEECCCCCEE
Confidence 4445555 456999999999999986532 22211111 278899999999999999
Q ss_pred EEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee-cceEEEeeccCCCCeeEEEEc
Q 001319 820 MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR-VDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 820 a~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~-~~~~~~~~~~h~~~V~~l~~s 897 (1101)
++++ ||.|++||+.+++.+..+.+|...|.+++|++ .+|++|+.||.|++||+. .+..+..+.+|.+.|.+++|+
T Consensus 150 ~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~ 226 (401)
T 4aez_A 150 SVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSWNR---HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVCGLAWR 226 (401)
T ss_dssp EEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEEET---TEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEEC
T ss_pred EEECCCCeEEEEECcCCeEEEEecCCCCceEEEEECC---CEEEEEcCCCCEEEEecccCcceeeEEcCCCCCeeEEEEc
Confidence 9998 89999999999999999999999999999954 699999999999999998 567788899999999999999
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE-EEEEe---CCeEEEEEcCCceeeeEe
Q 001319 898 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR-MLVVH---ETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~---d~~i~v~d~~~~~~~~~~ 973 (1101)
|++++|++++.||.|++||+.+++... ...++. ..+.+++|+|++.. +++++ |+.|++||+.+++.+..+
T Consensus 227 ~~~~~l~s~~~d~~v~iwd~~~~~~~~-----~~~~~~-~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d~~~~~~~~~~ 300 (401)
T 4aez_A 227 SDGLQLASGGNDNVVQIWDARSSIPKF-----TKTNHN-AAVKAVAWCPWQSNLLATGGGTMDKQIHFWNAATGARVNTV 300 (401)
T ss_dssp TTSSEEEEEETTSCEEEEETTCSSEEE-----EECCCS-SCCCEEEECTTSTTEEEEECCTTTCEEEEEETTTCCEEEEE
T ss_pred CCCCEEEEEeCCCeEEEccCCCCCccE-----EecCCc-ceEEEEEECCCCCCEEEEecCCCCCEEEEEECCCCCEEEEE
Confidence 999999999999999999999865432 223333 78999999997754 44453 899999999999998888
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEE--EeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFA--TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s--~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
.. ...|.+++|+|+|++|++ |+.||.|++||+.++........ .+|.. .+.+++|+| ++.+|+
T Consensus 301 ~~----~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~--------~~h~~--~v~~~~~s~-dg~~l~ 365 (401)
T 4aez_A 301 DA----GSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDI--------PAHDT--RVLYSALSP-DGRILS 365 (401)
T ss_dssp EC----SSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEE--------ECCSS--CCCEEEECT-TSSEEE
T ss_pred eC----CCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEe--------cCCCC--CEEEEEECC-CCCEEE
Confidence 64 678999999999999999 44899999999999766554331 11444 456899999 799999
Q ss_pred EEECCCeEEEEeCCCCCCc
Q 001319 1052 IGLTDGSVKVMEPSESEGK 1070 (1101)
Q Consensus 1052 s~~~Dg~v~iWd~~~~~~~ 1070 (1101)
+++.||.|++|++.+++..
T Consensus 366 s~~~dg~i~iw~~~~~~~~ 384 (401)
T 4aez_A 366 TAASDENLKFWRVYDGDHV 384 (401)
T ss_dssp EECTTSEEEEEECCC----
T ss_pred EEeCCCcEEEEECCCCccc
Confidence 9999999999999998843
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=2e-30 Score=292.49 Aligned_cols=288 Identities=17% Similarity=0.232 Sum_probs=237.4
Q ss_pred cceeEee-cCCCcEEEEEEecC---CceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccCCccE
Q 001319 335 RTVAVSL-HQGSTVISMDFHPS---HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1101)
Q Consensus 335 ~~~~~~~-~h~~~V~~v~fspd---g~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v 409 (1101)
......+ +|.+.|++++|+|+ |+ +|++|+.||.|+|||+.+ +..+. ..+.+|...|
T Consensus 29 ~~~~~~~~~h~~~v~~~~~~~~~~~g~-~l~~~~~dg~i~iw~~~~~~~~~~------------------~~~~~h~~~v 89 (368)
T 3mmy_A 29 MKDIEVTSSPDDSIGCLSFSPPTLPGN-FLIAGSWANDVRCWEVQDSGQTIP------------------KAQQMHTGPV 89 (368)
T ss_dssp TCCEECSSCCSSCEEEEEECCTTSSSE-EEEEEETTSEEEEEEECTTSCEEE------------------EEEEECSSCE
T ss_pred cceeEeccCCCCceEEEEEcCCCCCce-EEEEECCCCcEEEEEcCCCCceeE------------------EEeccccCCE
Confidence 3344444 49999999999999 56 678999999999999987 44331 2377899999
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEE--ecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF--AYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 410 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~--s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
.+++|+|++++|++|+.||.|++||+.+++.+. +.+|...|++++| ++++. +|++++.|+.|++|| .+++.
T Consensus 90 ~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~----~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~i~vwd~~~~~~ 163 (368)
T 3mmy_A 90 LDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQ----IAQHDAPVKTIHWIKAPNYS--CVMTGSWDKTLKFWDTRSSNP 163 (368)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEE----EEECSSCEEEEEEEECSSCE--EEEEEETTSEEEEECSSCSSC
T ss_pred EEEEECcCCCEEEEEcCCCcEEEEEcCCCCcee----eccccCceEEEEEEeCCCCC--EEEEccCCCcEEEEECCCCcE
Confidence 999999999999999999999999999987554 5679999999999 88888 899999999999999 88888
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--CCCCceEEEEEccCCCE----EEEeecCC
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--APGHWCTTMLYSADGSR----LFSCGTSK 560 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~~~~~v~~~~~s~d~~~----l~~~~~~~ 560 (1101)
+..+..+. .+.++.+.. ..+++++.++.+++|+++......... .....+.++++.++... +++++.
T Consensus 164 ~~~~~~~~-~~~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 236 (368)
T 3mmy_A 164 MMVLQLPE-RCYCADVIY----PMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSI-- 236 (368)
T ss_dssp SEEEECSS-CEEEEEEET----TEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEET--
T ss_pred EEEEecCC-CceEEEecC----CeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecC--
Confidence 88888765 566666543 478889999999999998876554332 23445677777666654 888875
Q ss_pred CCCceEEEEeCCCC---eeEEEecccCCc-----------ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC
Q 001319 561 DGDSFLVEWNESEG---TIKRTYAGFRKK-----------SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~---~~~~~~~~~~~~-----------~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
++.|++||+... .....+.+|... .+.+++|+|++++|++++.||.|++||+.+++.+..+..+
T Consensus 237 --dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~ 314 (368)
T 3mmy_A 237 --EGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQL 314 (368)
T ss_dssp --TSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred --CCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCC
Confidence 899999999987 567777777643 5899999999999999999999999999999999888765
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
. ..|.+++|+|+|++|++++.|+..+.|+.
T Consensus 315 ~--~~v~~~~~s~~g~~l~~~s~d~~~~~~~~ 344 (368)
T 3mmy_A 315 D--QPISACCFNHNGNIFAYASSYDWSKGHEF 344 (368)
T ss_dssp S--SCEEEEEECTTSSCEEEEECCCSTTCGGG
T ss_pred C--CCceEEEECCCCCeEEEEecccccccccc
Confidence 4 48999999999999999999886555544
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=3.5e-30 Score=299.00 Aligned_cols=248 Identities=12% Similarity=0.184 Sum_probs=205.1
Q ss_pred cCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcc--------cccceeeeccc------------CcEEEEEEecCC
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSND--------LRQHSQIDAHV------------GAVNDLAFAYPN 463 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~--------~~~~~~l~~h~------------~~V~~l~~s~d~ 463 (1101)
.|.+.|++++|+|+|++||+|+.||.|+|||+.+++. ......+.+|. +.|++++|+|++
T Consensus 26 ~~~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~ 105 (447)
T 3dw8_B 26 AEADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQK 105 (447)
T ss_dssp CGGGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCC
T ss_pred cccCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCC
Confidence 3678999999999999999999999999999998762 11233678998 889999999998
Q ss_pred --CceEEEEecCCceEEEEE-cCCcee---------------------------------------EE-eecCCcCeEEE
Q 001319 464 --KLLCVVTCGDDKLIKVWE-LSGRKL---------------------------------------FN-FEGHEAPVYSI 500 (1101)
Q Consensus 464 --~~~~l~s~~~d~~v~iwd-~~~~~~---------------------------------------~~-~~~h~~~v~~v 500 (1101)
. .|++++.|++|++|| .++... .. ..+|...|.++
T Consensus 106 ~~~--~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~ 183 (447)
T 3dw8_B 106 NAA--QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSI 183 (447)
T ss_dssp SSS--EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEE
T ss_pred Ccc--eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEE
Confidence 5 799999999999999 443321 12 36899999999
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeee--------eccCCCCceEEEEEccCC-CEEEEeecCCCCCceEEEEeC
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--------DYDAPGHWCTTMLYSADG-SRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--------~~~~~~~~v~~~~~s~d~-~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
+|++ ++.+|+++ .|+.|++||++...... .+..|...|.+++|+|++ +++++++. ++.|++||+
T Consensus 184 ~~~~--~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~----dg~i~iwd~ 256 (447)
T 3dw8_B 184 SINS--DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSS----KGTIRLCDM 256 (447)
T ss_dssp EECT--TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEET----TSCEEEEET
T ss_pred EEcC--CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeC----CCeEEEEEC
Confidence 9988 56899998 79999999998544333 255778899999999999 89999986 899999999
Q ss_pred CCCee----EEEecccCC-----------cceEEEEEeCCCCEEEEEeCCCcEEEEECCC-CeeeEeeccCCCCCC----
Q 001319 572 SEGTI----KRTYAGFRK-----------KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPN---- 631 (1101)
Q Consensus 572 ~~~~~----~~~~~~~~~-----------~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~---- 631 (1101)
.+++. ...+.++.. ..+.+++|+|++++|++++. +.|++||+.+ ++.+..+..+.....
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~ 335 (447)
T 3dw8_B 257 RASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRSKLCS 335 (447)
T ss_dssp TTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTTTHHH
T ss_pred cCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccccccc
Confidence 99887 788888764 27999999999999999999 9999999997 887777776543111
Q ss_pred ---------CCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 632 ---------LPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 632 ---------v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+..++|+|++++|++++.||.|++||+.++
T Consensus 336 ~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~ 374 (447)
T 3dw8_B 336 LYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTK 374 (447)
T ss_dssp HHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTC
T ss_pred cccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCC
Confidence 234999999999999999999999999876
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.2e-29 Score=287.33 Aligned_cols=284 Identities=15% Similarity=0.221 Sum_probs=234.6
Q ss_pred ccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 738 SKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
-....+.|++++ +++++.|++|++||... |.+... +...+|...|++++|+|||+
T Consensus 106 ~y~~~l~wS~~n--~lAvgld~tV~lWd~~t----------------------g~~~~~-~~~~~~~~~V~sv~fspdg~ 160 (420)
T 4gga_A 106 YYLNLVDWSSGN--VLAVALDNSVYLWSASS----------------------GDILQL-LQMEQPGEYISSVAWIKEGN 160 (420)
T ss_dssp TTCBCEEECTTS--EEEEEETTEEEEEETTT----------------------CCEEEE-EECCSTTCCEEEEEECTTSS
T ss_pred ccceeEEECCCC--EEEEEeCCEEEEEECCC----------------------CCEEEE-EEecCCCCcEEEEEECCCCC
Confidence 345678999764 56666799999998643 332221 11124788999999999999
Q ss_pred eEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-eEEEeeccCCCCeeEEE
Q 001319 818 YVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQKRITGLA 895 (1101)
Q Consensus 818 ~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-~~~~~~~~h~~~V~~l~ 895 (1101)
+||+|+ ||.|++||+.+++.+..+.+|...+.+++++ +.+|++|+.|+.+++||.... ..+..+.+|...+..+.
T Consensus 161 ~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~---~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~h~~~~~~~~ 237 (420)
T 4gga_A 161 YLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN---SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLR 237 (420)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE---TTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEE
T ss_pred EEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC---CCEEEEEeCCCceeEeeecccceeeEEecccccceeeee
Confidence 999998 8999999999999999999999999998885 579999999999999998764 55678899999999999
Q ss_pred EcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEE-EEE---eCCeEEEEEcCCceeee
Q 001319 896 FSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM-LVV---HETQLAIYDASKMERIR 971 (1101)
Q Consensus 896 ~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l-~~~---~d~~i~v~d~~~~~~~~ 971 (1101)
|+|+++++++++.|+.|++|+..+++...... .....+. ..|.+++|+|++..+ +++ .|+.|++||+.+++.+.
T Consensus 238 ~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~-~~~~~~~-~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~ 315 (420)
T 4gga_A 238 WAPDGRHLASGGNDNLVNVWPSAPGEGGWVPL-QTFTQHQ-GAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLS 315 (420)
T ss_dssp ECTTSSEEEEEETTSCEEEEESSCCSSCSCCS-EEECCCS-SCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEE
T ss_pred ecCCCCeeeeeeccccceEEeeccccccceee-eeecccC-CceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccce
Confidence 99999999999999999999999876543222 2222333 789999999976554 443 38999999999999988
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEe--CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCE
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATF--CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1049 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~--~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~ 1049 (1101)
.+.. ...+.++.|+++++.+++++ .||.|+|||+.+++++..+.+ |.. .+++++|+| |+.+
T Consensus 316 ~~~~----~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~g----------H~~--~V~~l~~sp-dg~~ 378 (420)
T 4gga_A 316 AVDA----HSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKG----------HTS--RVLSLTMSP-DGAT 378 (420)
T ss_dssp EEEC----SSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECC----------CSS--CEEEEEECT-TSSC
T ss_pred eecc----ccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcC----------CCC--CEEEEEEcC-CCCE
Confidence 8876 56799999999999988765 799999999999999988874 554 567999999 7999
Q ss_pred EEEEECCCeEEEEeCCCCC
Q 001319 1050 FAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1050 l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
|+||+.||+|+|||+.+..
T Consensus 379 l~S~s~D~tvriWdv~~~~ 397 (420)
T 4gga_A 379 VASAAADETLRLWRCFELD 397 (420)
T ss_dssp EEEEETTTEEEEECCSCSS
T ss_pred EEEEecCCeEEEEECCCCC
Confidence 9999999999999998755
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-30 Score=289.73 Aligned_cols=297 Identities=9% Similarity=0.118 Sum_probs=219.4
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc--C
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--D 417 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--d 417 (1101)
..+|.+.|++++|+|+|+ +||+|+.||.|+|||+.++..... ....+.+|...|.+++|+| |
T Consensus 7 ~~gH~~~v~~~~~~~~~~-~l~~~~~dg~i~iw~~~~~~~~~~---------------~~~~~~~~~~~v~~~~~~~~~d 70 (351)
T 3f3f_A 7 DSGHDDLVHDVVYDFYGR-HVATCSSDQHIKVFKLDKDTSNWE---------------LSDSWRAHDSSIVAIDWASPEY 70 (351)
T ss_dssp ECCCSSCEEEEEECSSSS-EEEEEETTSEEEEEEECSSSCCEE---------------EEEEEECCSSCEEEEEECCGGG
T ss_pred CcccccceeEEEEcCCCC-EEEEeeCCCeEEEEECCCCCCcce---------------ecceeccCCCcEEEEEEcCCCC
Confidence 346999999999999998 568999999999999987643211 1124678999999999999 6
Q ss_pred CCEEEEEECCCeEEEEeecCCccc------ccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCCceeE
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDL------RQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~------~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~~~~~ 488 (1101)
+++|++|+.||.|++||+.+++.. .....+.+|.+.|.+++|+|+ +. ++++++.|+.|++|| .+++.+.
T Consensus 71 ~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~dg~v~iwd~~~~~~~~ 148 (351)
T 3f3f_A 71 GRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGL--KLACLGNDGILRLYDALEPSDLR 148 (351)
T ss_dssp CSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTCEEEEEECSSTTCTT
T ss_pred CCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCc--EEEEecCCCcEEEecCCChHHhc
Confidence 999999999999999999987431 233467799999999999999 88 899999999999999 7776554
Q ss_pred Eee-------------cCCcCeEEEecccC-CCccEEEEeccCCeEEEEecCCCCe--eeeccCCCCceEEEEEccCC--
Q 001319 489 NFE-------------GHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADG-- 550 (1101)
Q Consensus 489 ~~~-------------~h~~~v~~v~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~d~-- 550 (1101)
.+. +|...+.+++|+|. .++.++++++.|+.+.+|+...... ...+..|...|.+++|+|++
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~ 228 (351)
T 3f3f_A 149 SWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGR 228 (351)
T ss_dssp CCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSC
T ss_pred cccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCC
Confidence 433 68889999999884 1257999999999998888777665 55677788899999999998
Q ss_pred --CEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEE----EeCCCcEEEEECCCCeeeEeec
Q 001319 551 --SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA----VGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 551 --~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~----~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
+++++++. |+.|++||+.++........... ........+....+.. +.....+.+|+....+.+..+.
T Consensus 229 ~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (351)
T 3f3f_A 229 WYQLIATGCK----DGRIRIFKITEKLSPLASEESLT-NSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD 303 (351)
T ss_dssp SSEEEEEEET----TSCEEEEEEEECC----------------------------------------CCSEEEEEEEEEC
T ss_pred cceEEEEEcC----CCeEEEEeCCCCcCccccCCccc-ceeccCCCcccccccccccccccceeeeecccccccEEEEEe
Confidence 78999885 89999999987655444333222 2222333333333333 2344556677766677777776
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.+. ..|.+++|+|++++|++++.||.|++|++.++
T Consensus 304 ~h~--~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~ 338 (351)
T 3f3f_A 304 DHN--GEVWSVSWNLTGTILSSAGDDGKVRLWKATYS 338 (351)
T ss_dssp TTS--SCEEEEEECSSSCCEEEEETTSCEEEEEECTT
T ss_pred ccc--ccEEEEEEcCCCCEEEEecCCCcEEEEecCcC
Confidence 554 47999999999999999999999999999876
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.8e-29 Score=274.69 Aligned_cols=281 Identities=16% Similarity=0.212 Sum_probs=227.8
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
.+.|+||+++ .|+++. |++|++||+.++++++.+..+. ...|.+++|+|+++++++|+.||.|++||+.+++.
T Consensus 28 ~~~l~WS~~~-~lAvg~-----D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~ 101 (318)
T 4ggc_A 28 LNLVDWSSGN-VLAVAL-----DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKR 101 (318)
T ss_dssp CBCEEECTTS-EEEEEE-----TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE
T ss_pred ceEEEECCCC-EEEEEe-----CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCcee
Confidence 4679999886 677664 8899999999999998876543 33699999999999999999999999999999999
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCC
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPA 699 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~ 699 (1101)
+..+..+.. ....+++++..+++++.++.+++|+..........+
T Consensus 102 ~~~~~~h~~----~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~------------------------------- 146 (318)
T 4ggc_A 102 LRNMTSHSA----RVGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATL------------------------------- 146 (318)
T ss_dssp EEEEECCSS----CEEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEE-------------------------------
T ss_pred EEEecCccc----eEEEeecCCCEEEEEecCCceEeeecCCCceeEEEE-------------------------------
Confidence 998876643 445667788899999999999999987653222211
Q ss_pred CcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeee
Q 001319 700 NCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 779 (1101)
Q Consensus 700 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~ 779 (1101)
.+|...+..+.+.+++..+++++.||.|++||+...+.....
T Consensus 147 ----------------------------------~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~---- 188 (318)
T 4ggc_A 147 ----------------------------------SGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVP---- 188 (318)
T ss_dssp ----------------------------------ECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCC----
T ss_pred ----------------------------------cCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccc----
Confidence 237788899999999999999999999999997643211100
Q ss_pred eccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEE---EEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEec
Q 001319 780 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM---SAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 855 (1101)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la---~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 855 (1101)
..... .+...|.++++++++..++ +++ ++.|++||........... +...+..++|++
T Consensus 189 ---------------~~~~~--~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~-~~~~v~~~~~~~ 250 (318)
T 4ggc_A 189 ---------------LQTFT--QHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVD-AHSQVCSILWSP 250 (318)
T ss_dssp ---------------SEEEC--CCCSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEE-CSSCEEEEEEET
T ss_pred ---------------eeeec--ccCCceEEEEecCCCCcEEEEEecCCCCEEEEEeccccccccccc-ceeeeeeeeecc
Confidence 00011 2778899999999876443 344 6889999999887776654 567899999999
Q ss_pred CCCCEEEEEe--CCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 856 QDNNIIAIGT--EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 856 ~~~~~la~g~--~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
++..+++++ .||.|+|||+.+++++..+.+|.+.|++++|+||+++|+||+.||+|++||+..
T Consensus 251 -~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~ 315 (318)
T 4ggc_A 251 -HYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWRCFE 315 (318)
T ss_dssp -TTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTTEEEEECCSC
T ss_pred -cccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCC
Confidence 666666544 799999999999999999999999999999999999999999999999999976
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=6e-30 Score=289.85 Aligned_cols=252 Identities=15% Similarity=0.203 Sum_probs=209.2
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC--C
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--g 418 (1101)
-+|.+.|++++|+|+|+ +||+|+.||.|+|||+..+.... ...+.+|...|.+++|+|+ +
T Consensus 8 ~~h~~~v~~~~~s~~~~-~l~~~~~dg~i~iw~~~~~~~~~-----------------~~~~~~h~~~v~~~~~~~~~~~ 69 (379)
T 3jrp_A 8 NAHNELIHDAVLDYYGK-RLATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFG 69 (379)
T ss_dssp EECCCCEEEEEECSSSS-EEEEEETTSCEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCGGGC
T ss_pred cCCcccEEEEEEcCCCC-EEEEEECCCcEEEEecCCCccee-----------------eeEecCCCCcEEEEEeCCCCCC
Confidence 35999999999999998 56899999999999998432211 1237789999999999987 9
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCC--ceeEEeecC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGH 493 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~--~~~~~~~~h 493 (1101)
++|++|+.||.|++||+.+++.. ....+.+|...|.+++|+|+ +. ++++++.|+.|++|| .++ .....+.+|
T Consensus 70 ~~l~s~~~dg~v~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~ 146 (379)
T 3jrp_A 70 TILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 146 (379)
T ss_dssp SEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCTTSCCCEEEEECC
T ss_pred CEEEEeccCCEEEEEEcCCCcee-EeeeecCCCcceEEEEeCCCCCCC--EEEEecCCCcEEEEecCCCCceeeEEecCC
Confidence 99999999999999999998621 22257789999999999999 88 899999999999999 555 345567889
Q ss_pred CcCeEEEecccCC-----------CccEEEEeccCCeEEEEecCCCCe----eeeccCCCCceEEEEEccC---CCEEEE
Q 001319 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMGS----RVDYDAPGHWCTTMLYSAD---GSRLFS 555 (1101)
Q Consensus 494 ~~~v~~v~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~~----~~~~~~~~~~v~~~~~s~d---~~~l~~ 555 (1101)
...|.+++|+|.. ++.++++++.|+.|++||+++... ...+..|...|.+++|+|+ ++++++
T Consensus 147 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s 226 (379)
T 3jrp_A 147 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 226 (379)
T ss_dssp TTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccCcEeEEEECCCCCCCCeEEE
Confidence 9999999998842 468999999999999999987653 3466778889999999999 899999
Q ss_pred eecCCCCCceEEEEeCCCCe---eEEEec--ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 556 CGTSKDGDSFLVEWNESEGT---IKRTYA--GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~---~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
++. ++.|++||+.++. ....+. .+.. .+.+++|+|++++|++++.||.|++|++..+.
T Consensus 227 ~~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~~ 289 (379)
T 3jrp_A 227 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 289 (379)
T ss_dssp EET----TSCEEEEEESSTTSCCEEEESSSSCCSS-CEEEEEECSSSCCEEEEESSSSEEEEEEEETT
T ss_pred EeC----CCEEEEEeCCCCCccceeeeeccccCCC-cEEEEEEcCCCCEEEEecCCCcEEEEeCCCCC
Confidence 985 8999999998864 222222 2333 78999999999999999999999999998543
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=282.74 Aligned_cols=211 Identities=11% Similarity=0.146 Sum_probs=180.0
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCccc-ccceeeecccCcEEEEEEec--CCCceEEEEecCCce
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKL 476 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~~d~~ 476 (1101)
.++.+|.+.|++++|+|++++||+|+.||.|++||+.++... .....+.+|...|++++|+| |++ +|++++.|++
T Consensus 5 ~~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~--~l~s~~~dg~ 82 (351)
T 3f3f_A 5 PFDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGR--IIASASYDKT 82 (351)
T ss_dssp CEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCS--EEEEEETTSC
T ss_pred ccCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCC--EEEEEcCCCe
Confidence 458899999999999999999999999999999999976432 23346789999999999999 577 8999999999
Q ss_pred EEEEE-cCC---------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-----------
Q 001319 477 IKVWE-LSG---------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD----------- 535 (1101)
Q Consensus 477 v~iwd-~~~---------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~----------- 535 (1101)
|++|| .++ +.+..+.+|...|.+++|+++.++.++++++.||.|++||+.+.+....+.
T Consensus 83 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~ 162 (351)
T 3f3f_A 83 VKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIP 162 (351)
T ss_dssp EEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCC
T ss_pred EEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccc
Confidence 99999 555 557888899999999999885336899999999999999998876543322
Q ss_pred --CCCCceEEEEEccC---CCEEEEeecCCCCCceEEEEeCCCCee--EEEecccCCcceEEEEEeCCC----CEEEEEe
Q 001319 536 --APGHWCTTMLYSAD---GSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQ----NHFLAVG 604 (1101)
Q Consensus 536 --~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~----~~l~~~~ 604 (1101)
.+...+.+++|+|+ +.++++++. ++.+.+|+...++. +..+.+|.. .+.+++|+|++ ++|++++
T Consensus 163 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~----~~~~~~~~~~~~~~~~~~~~~~h~~-~i~~~~~~p~~~~~~~~l~s~~ 237 (351)
T 3f3f_A 163 PANHLQSDFCLSWCPSRFSPEKLAVSAL----EQAIIYQRGKDGKLHVAAKLPGHKS-LIRSISWAPSIGRWYQLIATGC 237 (351)
T ss_dssp CSSCSCCCEEEEECCCSSSCCEEEEEET----TEEEEEEECTTSCEEEEEECCCCCS-CEEEEEECCCSSCSSEEEEEEE
T ss_pred cCCcccceeEEEeccCCCCCcEEEEecC----CCcEEEEccCCCceeeeeecCCCCc-ceeEEEECCCCCCcceEEEEEc
Confidence 45668999999997 899999885 88888888877765 667777766 89999999998 7999999
Q ss_pred CCCcEEEEECCCC
Q 001319 605 EDSQIKFWDMDNV 617 (1101)
Q Consensus 605 ~dg~i~iwd~~~~ 617 (1101)
.||.|++||+..+
T Consensus 238 ~dg~i~iwd~~~~ 250 (351)
T 3f3f_A 238 KDGRIRIFKITEK 250 (351)
T ss_dssp TTSCEEEEEEEEC
T ss_pred CCCeEEEEeCCCC
Confidence 9999999998754
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=3.6e-29 Score=288.48 Aligned_cols=282 Identities=16% Similarity=0.301 Sum_probs=236.2
Q ss_pred ccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE- 481 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd- 481 (1101)
.+|...|.+++| |+++|++|+.||.|++||+.+++... .+.+|.+.|.+++| +++ +|++|+.||+|++||
T Consensus 130 ~~~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~---~~~~h~~~v~~l~~--~~~--~l~sg~~dg~i~vwd~ 200 (435)
T 1p22_A 130 SETSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWDV 200 (435)
T ss_dssp CSSCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEES
T ss_pred cCCCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEE---EEcCCCCcEEEEEE--CCC--EEEEEcCCCeEEEEEC
Confidence 457778998887 89999999999999999999988766 68899999999999 677 899999999999999
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee---eeccCCCCceEEEEEccCCCEEEEeec
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
.+++.+..+.+|...|.+++|++ ..+++++.||.|++||+.+.... ..+..+...|.++++ +++++++++.
T Consensus 201 ~~~~~~~~~~~h~~~v~~l~~~~----~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~ 274 (435)
T 1p22_A 201 NTGEMLNTLIHHCEAVLHLRFNN----GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASG 274 (435)
T ss_dssp SSCCEEEEECCCCSCEEEEECCT----TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEET
T ss_pred CCCcEEEEEcCCCCcEEEEEEcC----CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeC
Confidence 89999999999999999999853 58999999999999999887765 567788889999998 7889999985
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
++.|++||+.+++.+..+.+|.. .+.+++++ ++++++|+.||.|++||+.+++.+..+..+. ..|.+++|
T Consensus 275 ----dg~i~vwd~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~--~~v~~~~~- 344 (435)
T 1p22_A 275 ----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHE--ELVRCIRF- 344 (435)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCS--SCEEEEEC-
T ss_pred ----CCeEEEEECCcCcEEEEEcCCCC-cEEEEEeC--CCEEEEEeCCCeEEEEECCCCCEEEEEeCCc--CcEEEEEe-
Confidence 89999999999999999998877 78888884 6899999999999999999999998887654 47888888
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
++.+|++|+.||.|++||+.++.........
T Consensus 345 -~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~~------------------------------------------------ 375 (435)
T 1p22_A 345 -DNKRIVSGAYDGKIKVWDLVAALDPRAPAGT------------------------------------------------ 375 (435)
T ss_dssp -CSSEEEEEETTSCEEEEEHHHHTSTTSCTTT------------------------------------------------
T ss_pred -cCCEEEEEeCCCcEEEEECCCCCCccccccc------------------------------------------------
Confidence 7899999999999999998765211100000
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCC
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRN 769 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~ 769 (1101)
.....+ .+|...|.+++| ++..+++++.||.|++|++...
T Consensus 376 ------~~~~~~---~~h~~~v~~l~~--~~~~l~s~s~Dg~i~iwd~~~~ 415 (435)
T 1p22_A 376 ------LCLRTL---VEHSGRVFRLQF--DEFQIVSSSHDDTILIWDFLND 415 (435)
T ss_dssp ------TEEEEE---CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC----
T ss_pred ------hheeec---cCCCCCeEEEEe--CCCEEEEEeCCCEEEEEECCCC
Confidence 000011 337788888888 7888999999999999998653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-29 Score=280.26 Aligned_cols=248 Identities=10% Similarity=-0.017 Sum_probs=210.2
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+|.+.|.+++|+|++++|++|+.|+.|++||+.+++.......+.+|...|.+++|+|+++. +|++|+.|+.|++||
T Consensus 7 ~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~-~l~~~~~dg~i~~wd 85 (342)
T 1yfq_A 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDL-QIYVGTVQGEILKVD 85 (342)
T ss_dssp SSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSE-EEEEEETTSCEEEEC
T ss_pred ccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceeeeecCCceEEEEECCCCCc-EEEEEcCCCeEEEEE
Confidence 5679999999999999999999999999999999988732223356689999999999999872 388899999999999
Q ss_pred c-CCceeEEeec--CCcCeEEEecccCCCccEEEEeccCCeEEEEecCC---------CCeeeeccCCCCceEEEEEccC
Q 001319 482 L-SGRKLFNFEG--HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---------MGSRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 482 ~-~~~~~~~~~~--h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~---------~~~~~~~~~~~~~v~~~~~s~d 549 (1101)
. .......+.+ |...|.+++|++ +.++++++.|+.|++||+++ .+....+. +...+.+++|+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~v~~l~~~~---~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~ 161 (342)
T 1yfq_A 86 LIGSPSFQALTNNEANLGICRICKYG---DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSS 161 (342)
T ss_dssp SSSSSSEEECBSCCCCSCEEEEEEET---TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSS
T ss_pred eccCCceEeccccCCCCceEEEEeCC---CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCC
Confidence 7 8878889999 999999999987 47999999999999999987 65555555 7778999999998
Q ss_pred CCEEEEeecCCCCCceEEEEeCCC-Cee--EEEecccCCcceEEEEEeC-CCCEEEEEeCCCcEEEEECCCC------ee
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQNHFLAVGEDSQIKFWDMDNV------NI 619 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~~l~~~~~dg~i~iwd~~~~------~~ 619 (1101)
+ +++++. ++.|++||+.+ +.. ......+. ..+.+++|+| +++++++++.||.|++|++... +.
T Consensus 162 ~--l~~~~~----d~~i~i~d~~~~~~~~~~~~~~~~~-~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~ 234 (342)
T 1yfq_A 162 R--LIVGMN----NSQVQWFRLPLCEDDNGTIEESGLK-YQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSK 234 (342)
T ss_dssp E--EEEEES----TTEEEEEESSCCTTCCCEEEECSCS-SCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTT
T ss_pred c--EEEEeC----CCeEEEEECCccccccceeeecCCC-CceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCccccccc
Confidence 8 777764 88999999988 543 23333344 4799999999 9999999999999999999876 66
Q ss_pred eEeeccCCC-------CCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 620 LTSTDAEGG-------LPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 620 ~~~~~~~~~-------~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
...+..+.. ...|.+++|+|++++|++++.||.|++||+.++
T Consensus 235 ~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~ 283 (342)
T 1yfq_A 235 RFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTR 283 (342)
T ss_dssp CEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTT
T ss_pred ceeeecccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccH
Confidence 666665532 337999999999999999999999999999876
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-29 Score=286.44 Aligned_cols=253 Identities=19% Similarity=0.299 Sum_probs=216.1
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~ 478 (1101)
++.+|.+.|.+++|+||+++||+|+.||.|+|||+..+.. .....+.+|.+.|++++|+++ ++ +|++++.|+.|+
T Consensus 6 ~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~--~l~s~~~dg~v~ 82 (379)
T 3jrp_A 6 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 82 (379)
T ss_dssp CEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEE-EEEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSCEE
T ss_pred EecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcc-eeeeEecCCCCcEEEEEeCCCCCCC--EEEEeccCCEEE
Confidence 4788999999999999999999999999999999984322 222367899999999999987 77 899999999999
Q ss_pred EEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCCceEEEEEcc-----
Q 001319 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1101)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 548 (1101)
+|| .+++ .+..+.+|...|.+++|+++.++.++++++.|+.|++||+.... ....+..+...|.+++|+|
T Consensus 83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~ 162 (379)
T 3jrp_A 83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 162 (379)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence 999 7776 77888899999999999886336899999999999999998874 3445667888999999999
Q ss_pred --------CCCEEEEeecCCCCCceEEEEeCCCCe----eEEEecccCCcceEEEEEeCC---CCEEEEEeCCCcEEEEE
Q 001319 549 --------DGSRLFSCGTSKDGDSFLVEWNESEGT----IKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 549 --------d~~~l~~~~~~~~~~~~i~iwd~~~~~----~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (1101)
++.++++++. ++.|++||+.++. ....+.+|.. .+.+++|+|+ +++|++++.||.|++||
T Consensus 163 ~~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd 237 (379)
T 3jrp_A 163 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 237 (379)
T ss_dssp -------CTTCEEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEETTSCEEEEE
T ss_pred cccccCCCCCCEEEEEeC----CCeEEEEEecCCCcceeeEEEEecccC-cEeEEEECCCCCCCCeEEEEeCCCEEEEEe
Confidence 6999999986 8899999997754 5567777776 8999999999 89999999999999999
Q ss_pred CCCCe---eeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 614 MDNVN---ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 614 ~~~~~---~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.++. .........+...|.+++|+|++++|++++.||.|++|++...
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 238 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp ESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred CCCCCccceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 98864 2333333334557999999999999999999999999998754
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-29 Score=280.16 Aligned_cols=299 Identities=14% Similarity=0.164 Sum_probs=235.9
Q ss_pred EE-cCCceeEEeecCCcCeEEEecccCC-CccEEEEeccCCeEEEEecCC-CCee-eeccCCCCceEEEEEccCCCEEEE
Q 001319 480 WE-LSGRKLFNFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDT-MGSR-VDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 480 wd-~~~~~~~~~~~h~~~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~-~~~~-~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
|+ ...+.+..+.+|.+.|.+++|+++. +|.+|++++.||.|++||+.+ .... ..+..|...|.+++|+|++++|++
T Consensus 24 ~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s 103 (368)
T 3mmy_A 24 DNHNPMKDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFT 103 (368)
T ss_dssp CSSCTTCCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEE
T ss_pred CCCCCcceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEE
Confidence 44 5666778889999999999998852 158999999999999999997 4443 567778899999999999999999
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE--eCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF--DTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~--~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
++. ++.|++||+.+++.+.. .+|.. .+.+++| +++++++++++.||.|++||+.+++.+..+..+. .+.
T Consensus 104 ~~~----dg~v~iwd~~~~~~~~~-~~~~~-~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~---~~~ 174 (368)
T 3mmy_A 104 ASC----DKTAKMWDLSSNQAIQI-AQHDA-PVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPE---RCY 174 (368)
T ss_dssp EET----TSEEEEEETTTTEEEEE-EECSS-CEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSS---CEE
T ss_pred EcC----CCcEEEEEcCCCCceee-ccccC-ceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCC---Cce
Confidence 986 89999999999987774 44555 7999999 8999999999999999999999999888887653 344
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSP 713 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~ 713 (1101)
++.+ .+..+++++.++.+.+|++............
T Consensus 175 ~~~~--~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~------------------------------------------- 209 (368)
T 3mmy_A 175 CADV--IYPMAVVATAERGLIVYQLENQPSEFRRIES------------------------------------------- 209 (368)
T ss_dssp EEEE--ETTEEEEEEGGGCEEEEECSSSCEEEEECCC-------------------------------------------
T ss_pred EEEe--cCCeeEEEeCCCcEEEEEeccccchhhhccc-------------------------------------------
Confidence 4444 4568889999999999998654211111100
Q ss_pred eEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccc
Q 001319 714 IILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793 (1101)
Q Consensus 714 ~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1101)
T Consensus 210 -------------------------------------------------------------------------------- 209 (368)
T 3mmy_A 210 -------------------------------------------------------------------------------- 209 (368)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred eeeccCCCCCCCCEeEEEecCCCCe----EEEEc-CCeEEEEECCCc---eEEEEeeCCCC------------CeeEEEE
Q 001319 794 MANDVAGVNLEEAVPCIALSKNDSY----VMSAT-GGKISLFNMMTF---KVMTTFMSPPP------------ASTFLAF 853 (1101)
Q Consensus 794 ~~~~~~~~~~~~~v~~~~~s~dg~~----la~~~-dg~i~vwd~~~~---~~~~~~~~~~~------------~i~~l~~ 853 (1101)
.....+.++++.++... +++++ +|.|++||+... .....+..|.. .|++++|
T Consensus 210 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 281 (368)
T 3mmy_A 210 --------PLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAF 281 (368)
T ss_dssp --------SCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEE
T ss_pred --------cccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEEEE
Confidence 01122233333333322 55665 788888888766 45666666655 7999999
Q ss_pred ecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001319 854 HPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 854 s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
+| ++++|++|+.||.|++||+.+++++..+.+|...|++++|+|++++|++++.|+..+.|++-..+
T Consensus 282 sp-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~ 348 (368)
T 3mmy_A 282 HP-VHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPISACCFNHNGNIFAYASSYDWSKGHEFYNPQ 348 (368)
T ss_dssp CT-TTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCCTT
T ss_pred ec-CCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCceEEEECCCCCeEEEEecccccccccccCCC
Confidence 99 89999999999999999999999999999999999999999999999999999877766655443
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=3.4e-29 Score=285.62 Aligned_cols=246 Identities=15% Similarity=0.180 Sum_probs=207.2
Q ss_pred cEEEEEEccCCCEEE-EEECCCeEEEEeecCC-cccccceeeecccCcEEEEEEec-CCCceEEEEecCCceEEEEE-cC
Q 001319 408 SVSRVAWSPDGNYVG-VAFTKHLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAY-PNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 408 ~v~~~~~spdg~~la-s~~~d~~i~vwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~-d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
....++++|+...++ +++.||.|+||++... +.......+.+|.+.|++++|+| +++ +|++|+.|++|++|| .+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~g~i~v~~~~~~~~~~~~~~~~~~h~~~V~~~~~~p~~~~--~l~s~s~dg~v~vw~~~~ 113 (402)
T 2aq5_A 36 DSGFCAVNPKFMALICEASGGGAFLVLPLGKTGRVDKNVPLVCGHTAPVLDIAWCPHNDN--VIASGSEDCTVMVWEIPD 113 (402)
T ss_dssp SSCSEEECSSEEEEEBCCSSSCCEEEEETTCCEECCTTCCCBCCCSSCEEEEEECTTCTT--EEEEEETTSEEEEEECCT
T ss_pred CCCcEEECCCeEEEEEEEcCCCEEEEEECccCCCCCCCCceEecCCCCEEEEEeCCCCCC--EEEEEeCCCeEEEEEccC
Confidence 445688999876554 5788999999999654 32233446789999999999999 777 899999999999999 66
Q ss_pred C-------ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec--cCCCCceEEEEEccCCCEEE
Q 001319 484 G-------RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 484 ~-------~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~ 554 (1101)
+ +++..+.+|...|.+++|++++ ..+|++++.|+.|++||+.+++....+ ..|...|.+++|+|++++++
T Consensus 114 ~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 192 (402)
T 2aq5_A 114 GGLVLPLREPVITLEGHTKRVGIVAWHPTA-QNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALIC 192 (402)
T ss_dssp TCCSSCBCSCSEEEECCSSCEEEEEECSSB-TTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEE
T ss_pred CCCccccCCceEEecCCCCeEEEEEECcCC-CCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEE
Confidence 6 5678999999999999998843 259999999999999999999888888 78888999999999999999
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEe-cccCCcceEEEEEeCCCCEEEEE---eCCCcEEEEECCCCee-eEeeccCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAV---GEDSQIKFWDMDNVNI-LTSTDAEGGL 629 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~---~~dg~i~iwd~~~~~~-~~~~~~~~~~ 629 (1101)
+++. ++.|++||+++++.+..+ .+|....+..++|+|++.++++| +.|+.|++||+.+++. +..... .+.
T Consensus 193 ~~~~----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~-~~~ 267 (402)
T 2aq5_A 193 TSCR----DKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQEL-DTS 267 (402)
T ss_dssp EEET----TSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEEC-CCC
T ss_pred EEec----CCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEec-cCC
Confidence 9985 899999999999999998 67777558889999999999998 7999999999998665 323322 233
Q ss_pred CCCCeeEEecCCCEEEEEE-cCCcEEEEEcccc
Q 001319 630 PNLPRLRFSKEGNLLAVTT-ADNGFKILANAIG 661 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~ 661 (1101)
..+.+++|+|++++|++++ .|+.|++|++.++
T Consensus 268 ~~v~~~~~s~~~~~l~~~g~~dg~i~i~d~~~~ 300 (402)
T 2aq5_A 268 SGVLLPFFDPDTNIVYLCGKGDSSIRYFEITSE 300 (402)
T ss_dssp SSCEEEEEETTTTEEEEEETTCSCEEEEEECSS
T ss_pred CceeEEEEcCCCCEEEEEEcCCCeEEEEEecCC
Confidence 4689999999999997554 7999999999876
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-28 Score=283.93 Aligned_cols=299 Identities=12% Similarity=0.061 Sum_probs=232.1
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCc---eeccccceeeccccc----------------------------
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD---RLVSKPFKIWDMAAC---------------------------- 393 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~---~~~~~~~~~~d~~~~---------------------------- 393 (1101)
.++.+++|+|||+ +|+++ .++.|++||+.+|+ .+.. |.....
T Consensus 5 ~p~~~v~~s~dg~-~l~~~-~~~~i~v~d~~~g~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (450)
T 2vdu_B 5 HPLQNLLTSRDGS-LVFAI-IKNCILSFKYQSPNHWEFAGK-----WSDDFDKIQESRNTTAKEQQGQSSENENENKKLK 77 (450)
T ss_dssp CCCCEEEECSSSS-EEEEE-ETTEEEEEEEETTTEEEEEEE-----EECCC-----------------------------
T ss_pred ccEEEEEecCCCC-EEEEE-eCCeEEEEECCCCCcceeeee-----cCCccccccccccccchhhccccccccccccccc
Confidence 4789999999999 44544 67899999999998 3321 110000
Q ss_pred ------------CccccccccccCCccEEEEEEccCCCEE-EEEECCCeEEEEeec--CCcccccceeeecccCcEEEEE
Q 001319 394 ------------SLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSYA--GSNDLRQHSQIDAHVGAVNDLA 458 (1101)
Q Consensus 394 ------------~~~~~~~~~~~h~~~v~~~~~spdg~~l-as~~~d~~i~vwd~~--~~~~~~~~~~l~~h~~~V~~l~ 458 (1101)
....+.....+|.+.|.+++|+|||++| |+|+.||.|++||+. +++.+..+. ...|...|++++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~-~~~~~~~v~~~~ 156 (450)
T 2vdu_B 78 SNKGDSIKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRK-RFCFSKRPNAIS 156 (450)
T ss_dssp ----------------------CCCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEE-EEECSSCEEEEE
T ss_pred cCcCccccccCccccCCCCCCCccCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeee-cccCCCCceEEE
Confidence 0000111234677789999999999996 889999999999999 777666321 136778999999
Q ss_pred EecCCCceEEEEecCCceEEEEE-cCCceeE----EeecCCcCeEEEecccC-CCccEEEEeccCCeEEEEecCCCCeee
Q 001319 459 FAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF----NFEGHEAPVYSICPHHK-ENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1101)
Q Consensus 459 ~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~----~~~~h~~~v~~v~~~~~-~~~~~l~s~~~d~~i~~wd~~~~~~~~ 532 (1101)
|+|+++ +|++|+.|+.|++|+ .+++... .+.+|...|.+++|+|+ ..+.+|++++.|+.|++||+.++....
T Consensus 157 ~sp~~~--~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~ 234 (450)
T 2vdu_B 157 IAEDDT--TVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVD 234 (450)
T ss_dssp ECTTSS--EEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEE
T ss_pred EcCCCC--EEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceee
Confidence 999999 899999999999999 6666443 78899999999999884 126899999999999999999888776
Q ss_pred e-ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc------------------------CCcc
Q 001319 533 D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF------------------------RKKS 587 (1101)
Q Consensus 533 ~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~------------------------~~~~ 587 (1101)
. +..|...|.+++|+ ++++|++++. ++.|++||+.+++.+..+..+ ....
T Consensus 235 ~~~~~h~~~v~~~~~s-d~~~l~s~~~----d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (450)
T 2vdu_B 235 KWLFGHKHFVSSICCG-KDYLLLSAGG----DDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFA 309 (450)
T ss_dssp EECCCCSSCEEEEEEC-STTEEEEEES----SSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCC
T ss_pred eeecCCCCceEEEEEC-CCCEEEEEeC----CCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEE
Confidence 6 55788899999999 9999999985 899999999999988887642 1235
Q ss_pred eEEEEEeCCCCEEEEEe-CCCcEEEEEC--CCC---eeeEeeccCCCCCCCCeeEEecCCCEEEEEEc------CCcEEE
Q 001319 588 NGVVQFDTTQNHFLAVG-EDSQIKFWDM--DNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA------DNGFKI 655 (1101)
Q Consensus 588 v~~~~~~~~~~~l~~~~-~dg~i~iwd~--~~~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~------d~~i~i 655 (1101)
+..++|+|+++++++++ .++.|++|++ ..+ +.+..+..+ ..|.+++|+|++.++++++. +..|.+
T Consensus 310 v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~~~l~~~~~~~~~---~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v 386 (450)
T 2vdu_B 310 VSKIIKSKNLPFVAFFVEATKCIIILEMSEKQKGDLALKQIITFP---YNVISLSAHNDEFQVTLDNKESSGVQKNFAKF 386 (450)
T ss_dssp EEEEEECSSSSEEEEEETTCSEEEEEEECSSSTTCEEEEEEEECS---SCEEEEEEETTEEEEEECCTTCCSSCCCSEEE
T ss_pred EEEEEEeCCCCEEEEEECCCCeEEEEEeccCCCCceeeccEeccC---CceEEEEecCCcEEEEEecccCCCCCCcceEE
Confidence 78899999999999998 8999999999 555 666666654 36899999996533333332 455888
Q ss_pred EEcccc
Q 001319 656 LANAIG 661 (1101)
Q Consensus 656 wd~~~~ 661 (1101)
|.+...
T Consensus 387 ~~~~~~ 392 (450)
T 2vdu_B 387 IEYNLN 392 (450)
T ss_dssp EEEETT
T ss_pred EEEEcC
Confidence 876543
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-27 Score=269.80 Aligned_cols=274 Identities=9% Similarity=0.054 Sum_probs=222.4
Q ss_pred ceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE-EEEECCCeEEEEee
Q 001319 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV-GVAFTKHLIQLYSY 435 (1101)
Q Consensus 357 ~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l-as~~~d~~i~vwd~ 435 (1101)
++++++++.|+.|++||+.+++.+.. +.+|. .+.+++|+|||++| ++++.|+.|++||+
T Consensus 2 ~~l~vs~~~d~~v~v~d~~~~~~~~~-------------------~~~~~-~~~~~~~s~dg~~l~~~~~~d~~i~v~d~ 61 (391)
T 1l0q_A 2 TFAYIANSESDNISVIDVTSNKVTAT-------------------IPVGS-NPMGAVISPDGTKVYVANAHSNDVSIIDT 61 (391)
T ss_dssp EEEEEEETTTTEEEEEETTTTEEEEE-------------------EECSS-SEEEEEECTTSSEEEEEEGGGTEEEEEET
T ss_pred CEEEEEcCCCCEEEEEECCCCeEEEE-------------------eecCC-CcceEEECCCCCEEEEECCCCCeEEEEEC
Confidence 45789999999999999998876642 44454 58999999999987 56668999999999
Q ss_pred cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEE-EE
Q 001319 436 AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FS 513 (1101)
Q Consensus 436 ~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s 513 (1101)
.+++.+. .+..+. .+.+++|+|++++ ++++++.|+.|++|| .+++.+..+..+ ..+.+++|++ +++.+ ++
T Consensus 62 ~~~~~~~---~~~~~~-~v~~~~~spdg~~-l~~~~~~~~~v~v~d~~~~~~~~~~~~~-~~~~~~~~s~--dg~~l~~~ 133 (391)
T 1l0q_A 62 ATNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSP--DGKKLYVT 133 (391)
T ss_dssp TTTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECT--TSSEEEEE
T ss_pred CCCeEEE---EEECCC-CccceEECCCCCE-EEEEECCCCEEEEEECCCCeEEEEEeCC-CCcceEEECC--CCCEEEEE
Confidence 9988665 444444 8999999999994 446777889999999 778877777754 4689999987 55666 78
Q ss_pred eccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE
Q 001319 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1101)
Q Consensus 514 ~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 593 (1101)
++.|+.|++||+.+++....+..+ ..+.+++|+|++++++.++. .++.|++||+.+++....+..+. .+..++|
T Consensus 134 ~~~~~~v~~~d~~~~~~~~~~~~~-~~~~~~~~~~dg~~l~~~~~---~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~~ 207 (391)
T 1l0q_A 134 NNGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAV 207 (391)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEE
T ss_pred eCCCCEEEEEECCCCcEEEEEecC-CCcceEEECCCCCEEEEEeC---CCCEEEEEECCCCeEEEEEecCC--CccceEE
Confidence 888999999999988877766654 45799999999998865443 37899999999999888876532 5788999
Q ss_pred eCCCCEEEEEe---CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE-EEEEcCCcEEEEEccccccccccc
Q 001319 594 DTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 594 ~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~ 668 (1101)
+|+++++++++ .++.|++||+.+++.+..+..+. .+.+++|+|+|+++ ++++.|+.|++||+.++ .....+
T Consensus 208 ~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~~~-~~~~~~ 282 (391)
T 1l0q_A 208 NPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFXNTVSVIDTATN-TITATM 282 (391)
T ss_dssp CTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT-EEEEEE
T ss_pred CCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC---CccEEEEccCCCEEEEEcCCCCEEEEEECCCC-cEEEEE
Confidence 99999999987 68999999999999888887643 46889999999988 56678999999999887 444333
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-27 Score=249.29 Aligned_cols=297 Identities=13% Similarity=0.064 Sum_probs=204.1
Q ss_pred cEEEEEEccCCC---EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 408 SVSRVAWSPDGN---YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 408 ~v~~~~~spdg~---~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
.+.++-|-.-|- .+++++. ..|++|+..++......+++.+|..+|..++|.||..+++.++-+.
T Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~-~~v~lw~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~----------- 108 (356)
T 2w18_A 41 DVSAMFWERAGCKEPCIITACE-DVVSLWKALDAWQWEKLYTWHFAEVPVLQIVPVPDVYNLVCVALGN----------- 108 (356)
T ss_dssp EEEEEEEC----CEEEEEEEES-SEEEEEEESSSSBEEEEEEEECCSSCEEEECCCTTCCSCEEEEECS-----------
T ss_pred EEeeeeeccCCCCccEEEEecc-ceEEEcccCCCccceeeEEEeccCceeEEEEEcCcccceeeeeecc-----------
Confidence 567777755443 5666665 4799999999855556668999999999999999988755554331
Q ss_pred ceeEEeecCCcCeEEEecccCCC----ccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKEN----IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~----~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
-+...|.+++++| | ++++++++.+ +++|++. +|+.+.+++.
T Consensus 109 -------~~~~~v~sla~sp--d~~~~~~~l~s~g~~--~~v~~l~----------------------~g~lv~ss~~-- 153 (356)
T 2w18_A 109 -------LEIREIRALFCSS--DDESEKQVLLKSGNI--KAVLGLT----------------------KRRLVSSSGT-- 153 (356)
T ss_dssp -------SSEEEEEEECC--------CCEEEEEEEEE--EEEEEET----------------------TTEEEEEESS--
T ss_pred -------ccccceEEEEECC--CccccccEEEeCCCe--EEEEecC----------------------CCcEEEeccc--
Confidence 1455789999977 5 6889888754 7778653 4444444321
Q ss_pred CCCceEEEEeC-CCCeeEEEecccCCcceEEEEEeC---CCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-CCCCCCee
Q 001319 561 DGDSFLVEWNE-SEGTIKRTYAGFRKKSNGVVQFDT---TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-GLPNLPRL 635 (1101)
Q Consensus 561 ~~~~~i~iwd~-~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-~~~~v~~v 635 (1101)
..++.|++|++ .+|+.+..+.+|.. .+..++|++ ++..|++++.|++|+|||+.+++.+.++..+. +...+.++
T Consensus 154 g~d~~V~~~~~s~dG~~~~s~~~~~~-~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~v 232 (356)
T 2w18_A 154 LSDQQVEVMTFAEDGGGKENQFLMPP-EETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHK 232 (356)
T ss_dssp STTCEEEEEEECTTSCEEEEEEECCC-SSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEE
T ss_pred CCCCcEEEEEECCCCceeeeeccCCC-ceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEE
Confidence 12667777777 44666677777766 788889999 77999999999999999999999999986432 23355666
Q ss_pred EEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceE
Q 001319 636 RFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPII 715 (1101)
Q Consensus 636 ~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 715 (1101)
+|+|+|.++++++.+.. +|+
T Consensus 233 afSpdG~~lvs~s~~~~--~w~---------------------------------------------------------- 252 (356)
T 2w18_A 233 AYSEMGLLFIVLSHPCA--KES---------------------------------------------------------- 252 (356)
T ss_dssp EEEETTEEEEEEC-------------------------------------------------------------------
T ss_pred EECCCCCEEEEeccCCC--cce----------------------------------------------------------
Confidence 78888877776654322 121
Q ss_pred EEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee
Q 001319 716 LAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 795 (1101)
Q Consensus 716 l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1101)
+++++.|+++++|
T Consensus 253 ------------------------------------laSGs~D~tIklW------------------------------- 265 (356)
T 2w18_A 253 ------------------------------------ESLRSPVFQLIVI------------------------------- 265 (356)
T ss_dssp -----------------------------------------CCEEEEEE-------------------------------
T ss_pred ------------------------------------eeccCCCcEEEEE-------------------------------
Confidence 2333444444544
Q ss_pred eccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEe-----eCCCCCeeEEEEecCCCCEEEEEeCCCcE
Q 001319 796 NDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTF-----MSPPPASTFLAFHPQDNNIIAIGTEDSTI 870 (1101)
Q Consensus 796 ~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~-----~~~~~~i~~l~~s~~~~~~la~g~~dg~v 870 (1101)
|..+++.+..+ .+|...+.+..+ ++.++|+|+.||+|
T Consensus 266 -----------------------------------d~~tgk~l~v~~~~~p~Gh~~~~lsg~~---sg~~lASgS~DgTI 307 (356)
T 2w18_A 266 -----------------------------------NPKTTLSVGVMLYCLPPGQAGRFLEGDV---KDHCAAAILTSGTI 307 (356)
T ss_dssp -----------------------------------ETTTTEEEEEEEECCCTTCCCCEEEEEE---ETTEEEEEETTSCE
T ss_pred -----------------------------------ECCCCEEEEEEEeeccCCCcceeEcccc---CCCEEEEEcCCCcE
Confidence 44444433332 234433333333 46799999999999
Q ss_pred EEEEeecceEEEeeccCCCCee-EEEEcCCCCEEEEEeCCCcEEEEEC
Q 001319 871 HIYNVRVDEVKSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 871 ~iwd~~~~~~~~~~~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
+|||+.+++++.++.+|...+. .++|+|||++|++|+.|++|+|||+
T Consensus 308 kIWDl~tGk~l~tL~gH~~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 308 AIWDLLLGQCTALLPPVSDQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp EEEETTTCSEEEEECCC--CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred EEEECCCCcEEEEecCCCCCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999988765 5899999999999999999999996
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=271.81 Aligned_cols=276 Identities=13% Similarity=0.162 Sum_probs=214.0
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.|.+.|++++|||||+ +||+|+.++ ++|||+.+++.... .+...+..++++++++++
T Consensus 17 ~h~~~V~~v~fs~dg~-~la~g~~~~-~~iw~~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~ 73 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQS-CLILSTLKS-FEIYNVHPVAHIMS---------------------QEMRHLSKVRMLHRTNYV 73 (355)
T ss_dssp --CCCCCEEEECTTSS-EEEEECSSE-EEEEEETTEEEEEE---------------------EECSCCCEEEECTTSSEE
T ss_pred cCCCceEEEEECCCCC-EEEEEcCCE-EEEEecCCcceeee---------------------eecCCeEEEEEcCCCCEE
Confidence 4899999999999998 568887664 78999987765431 122258889999999988
Q ss_pred E-EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC-ceeEEeecCCcCeE
Q 001319 422 G-VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG-RKLFNFEGHEAPVY 498 (1101)
Q Consensus 422 a-s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~-~~~~~~~~h~~~v~ 498 (1101)
+ +|+.|++|++||+.+++.+. .+. |...|.+++|+++. ++.+. |+.|++|| .++ +.+..+.. +..
T Consensus 74 ~~~~~~d~~v~iWd~~~~~~~~---~~~-~~~~v~~v~~~~~~----~~~~~-~~~i~i~d~~~~~~~~~~~~~---~~~ 141 (355)
T 3vu4_A 74 AFVTGVKEVVHIWDDVKKQDVS---RIK-VDAPVKDLFLSREF----IVVSY-GDVISVFKFGNPWKRITDDIR---FGG 141 (355)
T ss_dssp EEECSSTTEEEEEETTTTEEEE---EEE-CSSCEEEEEECSSE----EEEEE-TTEEEEEESSTTCCBSSCCEE---EEE
T ss_pred EEEECCccEEEEEECCCCcEEE---EEE-CCCceEEEEEcCCE----EEEEE-cCEEEEEECCCCceeeEEecc---CCc
Confidence 5 56778999999999998766 443 67799999998764 33333 78999999 666 66666655 333
Q ss_pred EEecccCCCccEEEE--eccCCeEEEEecCCCC----------------eeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 499 SICPHHKENIQFIFS--TAIDGKIKAWLYDTMG----------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s--~~~d~~i~~wd~~~~~----------------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+++++ .+++. ++.||.|++||+.+.. ....+..|...|.+++|+|+|++|++++.
T Consensus 142 ~~~~s~----~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~-- 215 (355)
T 3vu4_A 142 VCEFSN----GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQ-- 215 (355)
T ss_dssp EEEEET----TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEET--
T ss_pred eEEEEc----cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeC--
Confidence 444544 34554 6899999999998765 15677889999999999999999999986
Q ss_pred CCCce-EEEEeCCCCeeEEEec-c-cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE--eec-----------
Q 001319 561 DGDSF-LVEWNESEGTIKRTYA-G-FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STD----------- 624 (1101)
Q Consensus 561 ~~~~~-i~iwd~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~----------- 624 (1101)
|++ |++||+.+++.+..+. + |.. .+.+++|+|++++|++++.|++|++||+..+.... .+.
T Consensus 216 --d~~~v~iwd~~~~~~~~~~~~g~h~~-~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (355)
T 3vu4_A 216 --DGTIIRVFKTEDGVLVREFRRGLDRA-DVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSE 292 (355)
T ss_dssp --TCSEEEEEETTTCCEEEEEECTTCCS-CEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCS
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCCCC-cEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccc
Confidence 898 9999999999999998 5 554 89999999999999999999999999997653211 100
Q ss_pred -------c-CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 625 -------A-EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 625 -------~-~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
. .........++|+++|+.+++++.||.+++|++..+
T Consensus 293 ~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~ 337 (355)
T 3vu4_A 293 WSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD 337 (355)
T ss_dssp SCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred cceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence 0 011123477999999999999999999999998765
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-26 Score=267.59 Aligned_cols=364 Identities=14% Similarity=0.168 Sum_probs=261.9
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEE---EccCCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA---WSPDGN 419 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~---~spdg~ 419 (1101)
...+|..+.|+|....++..+......+++... ....+..++ |+|+++
T Consensus 26 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-----------------------------~~~g~~~~~~p~~~~~~~ 76 (433)
T 3bws_A 26 NGTEIVKFSIHPYKGTVIRLGEEILPFKVLEMD-----------------------------KNIALVEMAIPVYKDEKE 76 (433)
T ss_dssp -CEEEEEEEEECCTTCEEEETTEECCEEEEEEE-----------------------------TTEEEEEEEEECCCTTCC
T ss_pred CCcEEEEEecccccCceEEcCceecceeeeecc-----------------------------cCCccEEEEEeeccCCCc
Confidence 345788899999755444433222222333221 233456666 777666
Q ss_pred EEEEEE--------------CCC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-c
Q 001319 420 YVGVAF--------------TKH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L 482 (1101)
Q Consensus 420 ~las~~--------------~d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~ 482 (1101)
.+++.+ .++ .|..||..++. ......+..+ ..+.+++|+|++. ++++++.|+.|++|| .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~~~-~~~~~~~~~~-~~~~~~~~s~~~~--~~~~~~~~~~i~~~d~~ 152 (433)
T 3bws_A 77 IELKLSSPGFQNSSYRIRKPEELNEKLIALDKEGIT-HRFISRFKTG-FQPKSVRFIDNTR--LAIPLLEDEGMDVLDIN 152 (433)
T ss_dssp EEEEEECTTBCCEEEEESSGGGGTTCEEECCBTTCS-EEEEEEEECS-SCBCCCEESSSSE--EEEEBTTSSSEEEEETT
T ss_pred EEEEEEccccCcceeeecccCCCceEEEEECCCCCc-ceEEEEEcCC-CCceEEEEeCCCe--EEEEeCCCCeEEEEECC
Confidence 555432 233 34444444342 1222234444 4466999999666 788899999999999 7
Q ss_pred CCceeE-----EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 483 SGRKLF-----NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 483 ~~~~~~-----~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
+++.+. .+.+|.+.|.+++|++ ++.++++++.|+.|++||+++.+....+..+...+.+++|+|+++++++++
T Consensus 153 ~g~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 230 (433)
T 3bws_A 153 SGQTVRLSPPEKYKKKLGFVETISIPE--HNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSN 230 (433)
T ss_dssp TCCEEEECCCHHHHTTCCEEEEEEEGG--GTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEE
T ss_pred CCeEeeecCcccccccCCceeEEEEcC--CCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEe
Confidence 788776 4568899999999966 668999999999999999999888888888888999999999999987655
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
. .++.|++||+.+++.+..+..+. .+..++|+|+++++++++.++ . .+.
T Consensus 231 ~---~~~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~~~g~~l~~~~~~~-------------------~---~~~---- 279 (433)
T 3bws_A 231 W---ISEDISVIDRKTKLEIRKTDKIG--LPRGLLLSKDGKELYIAQFSA-------------------S---NQE---- 279 (433)
T ss_dssp T---TTTEEEEEETTTTEEEEECCCCS--EEEEEEECTTSSEEEEEEEES-------------------C---TTC----
T ss_pred c---CCCcEEEEECCCCcEEEEecCCC--CceEEEEcCCCCEEEEEECCC-------------------C---ccc----
Confidence 3 37899999999999988887643 488899999999988876321 0 000
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
..|+.|++||+.++. ....
T Consensus 280 ----------~~dg~i~~~d~~~~~-~~~~-------------------------------------------------- 298 (433)
T 3bws_A 280 ----------SGGGRLGIYSMDKEK-LIDT-------------------------------------------------- 298 (433)
T ss_dssp ----------SCCEEEEEEETTTTE-EEEE--------------------------------------------------
T ss_pred ----------cCCCeEEEEECCCCc-EEee--------------------------------------------------
Confidence 234556666654330 0000
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeec
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1101)
+
T Consensus 299 -----------------------------------~-------------------------------------------- 299 (433)
T 3bws_A 299 -----------------------------------I-------------------------------------------- 299 (433)
T ss_dssp -----------------------------------E--------------------------------------------
T ss_pred -----------------------------------c--------------------------------------------
Confidence 0
Q ss_pred cCCCCCCCCEeEEEecCCCCeE-EEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC---------
Q 001319 798 VAGVNLEEAVPCIALSKNDSYV-MSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE--------- 866 (1101)
Q Consensus 798 ~~~~~~~~~v~~~~~s~dg~~l-a~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~--------- 866 (1101)
.+...+.+++|+|+++.+ ++++ ++.|++||+.+++.+..+. +...+.+++|+| ++++|++++.
T Consensus 300 ----~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dg~~l~~~~~~~~~~~~~~ 373 (433)
T 3bws_A 300 ----GPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIP-VFDKPNTIALSP-DGKYLYVSCRGPNHPTEGY 373 (433)
T ss_dssp ----EEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEE-CSSSEEEEEECT-TSSEEEEEECCCCCTTTCT
T ss_pred ----cCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEec-CCCCCCeEEEcC-CCCEEEEEecCCCcccccc
Confidence 012235667888888755 4444 7889999999888887776 567899999999 8888888876
Q ss_pred ------CCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCC
Q 001319 867 ------DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDT 919 (1101)
Q Consensus 867 ------dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~ 919 (1101)
||.|++||+.+++.+..+.. ...+.+++|+|+|++|++++. |+.|++|+++.
T Consensus 374 ~~~g~~dg~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 374 LKKGLVLGKVYVIDTTTDTVKEFWEA-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp TSCCSSCCEEEEEETTTTEEEEEEEC-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred ccccccceEEEEEECCCCcEEEEecC-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 57999999999999888876 457999999999999988875 99999999864
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.1e-29 Score=306.59 Aligned_cols=252 Identities=15% Similarity=0.194 Sum_probs=210.0
Q ss_pred ecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC--C
Q 001319 341 LHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD--G 418 (1101)
Q Consensus 341 ~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd--g 418 (1101)
-+|.+.|++++|+|+|++ +++|+.||.|+|||+.++.... ...+.+|.+.|.+++|+|+ +
T Consensus 6 ~gH~~~V~~l~~s~dg~~-latg~~dg~I~vwd~~~~~~~~-----------------~~~l~~h~~~V~~l~~s~~~~~ 67 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKR-LATCSSDKTIKIFEVEGETHKL-----------------IDTLTGHEGPVWRVDWAHPKFG 67 (753)
T ss_dssp --CCCCEEEECCCSSSCC-EEEEETTTEEEEEEEETTEEEE-----------------EEEECCCSSCEEEEEECCTTSC
T ss_pred ccCcceeEEEEECCCCCe-EEEEECCCcEEEEecCCCCCcc-----------------ceeccCCcCceEEEEecCCCCC
Confidence 469999999999999985 6899999999999998433211 1247889999999999998 9
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEEEEE-cCC--ceeEEeecC
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIKVWE-LSG--RKLFNFEGH 493 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~iwd-~~~--~~~~~~~~h 493 (1101)
++|++|+.||.|++||+.+++.. ....+.+|...|++++|+|+ ++ ++++|+.||.|++|| .++ .....+.+|
T Consensus 68 ~~l~s~s~Dg~I~vwd~~~~~~~-~~~~~~~h~~~V~~v~~sp~~~~~--~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~ 144 (753)
T 3jro_A 68 TILASCSYDGKVLIWKEENGRWS-QIAVHAVHSASVNSVQWAPHEYGP--LLLVASSDGKVSVVEFKENGTTSPIIIDAH 144 (753)
T ss_dssp SEEEEEETTSCEEEEEEETTEEE-EEEEECCCSSCEEEEEECCGGGCS--EEEEEETTSEEEEEECCSSSCCCCEEEECC
T ss_pred CEEEEEeCCCeEEEEECCCCccc-ccccccCCCCCeEEEEECCCCCCC--EEEEEeCCCcEEEEEeecCCCcceeEeecC
Confidence 99999999999999999997621 22367789999999999999 88 899999999999999 544 345677889
Q ss_pred CcCeEEEecccCC-----------CccEEEEeccCCeEEEEecCCCC----eeeeccCCCCceEEEEEccC---CCEEEE
Q 001319 494 EAPVYSICPHHKE-----------NIQFIFSTAIDGKIKAWLYDTMG----SRVDYDAPGHWCTTMLYSAD---GSRLFS 555 (1101)
Q Consensus 494 ~~~v~~v~~~~~~-----------~~~~l~s~~~d~~i~~wd~~~~~----~~~~~~~~~~~v~~~~~s~d---~~~l~~ 555 (1101)
...|.+++|+|.. ++.++++++.||.|++||+++.. ....+..|...|.+++|+|+ ++++++
T Consensus 145 ~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~sp~~~~~~~l~s 224 (753)
T 3jro_A 145 AIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLAS 224 (753)
T ss_dssp SSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEE
T ss_pred CCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCCcEEEEEeccCCCCCCEEEE
Confidence 9999999998842 46799999999999999998774 34566788899999999999 899999
Q ss_pred eecCCCCCceEEEEeCCCCe-----eEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 556 CGTSKDGDSFLVEWNESEGT-----IKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~-----~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
++. ++.|++||+.++. .......+.. .+.+++|+|+++++++++.||.|++|++..+.
T Consensus 225 ~s~----Dg~I~iwd~~~~~~~~~~~~~~~~~~~~-~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 225 VSQ----DRTCIIWTQDNEQGPWKKTLLKEEKFPD-VLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp EES----SSCEEEEEESSSSSCCBCCBSSSSCCSS-CCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred Eec----CCEEEEecCCCCCCcceeEEeccCCCCC-ceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 986 8999999998864 2222233444 78889999999999999999999999998644
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=275.51 Aligned_cols=302 Identities=9% Similarity=0.067 Sum_probs=244.7
Q ss_pred ccccCCCC--cceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLP--RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~--~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|.++... ......+.+...+.+++|+|+++ ++++++.++.|++||+.+++...... ...+.+
T Consensus 103 l~~~d~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~~~~~i~~~d~~~g~~~~~~~--------------~~~~~~ 167 (433)
T 3bws_A 103 LIALDKEGITHRFISRFKTGFQPKSVRFIDNTR-LAIPLLEDEGMDVLDINSGQTVRLSP--------------PEKYKK 167 (433)
T ss_dssp EEECCBTTCSEEEEEEEECSSCBCCCEESSSSE-EEEEBTTSSSEEEEETTTCCEEEECC--------------CHHHHT
T ss_pred EEEECCCCCcceEEEEEcCCCCceEEEEeCCCe-EEEEeCCCCeEEEEECCCCeEeeecC--------------cccccc
Confidence 56655532 25556666667788999999654 77888889999999999887654211 113568
Q ss_pred CCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cC
Q 001319 405 VPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~ 483 (1101)
|...|.+++|+|+++++++++.|+.|++||+++++.+. .+..|...+.+++|+|+++. ++++++.|+.|++|| .+
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~-l~~~~~~~~~i~~~d~~~ 243 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKA---TVDLTGKWSKILLYDPIRDL-VYCSNWISEDISVIDRKT 243 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEE---EEECSSSSEEEEEEETTTTE-EEEEETTTTEEEEEETTT
T ss_pred cCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEE---EEcCCCCCeeEEEEcCCCCE-EEEEecCCCcEEEEECCC
Confidence 99999999999999999999999999999999987665 56689999999999999994 446777899999999 78
Q ss_pred CceeEEeecCCcCeEEEecccCCCccEEEEec--------cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 484 GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA--------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 484 ~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~--------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
++.+..+..+. .+.+++|++ +++++++++ .|+.|++||+.+++....+ .+...+.+++|+|+++.+++
T Consensus 244 ~~~~~~~~~~~-~~~~~~~~~--~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~-~~~~~~~~~~~~~~g~~l~~ 319 (433)
T 3bws_A 244 KLEIRKTDKIG-LPRGLLLSK--DGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTI-GPPGNKRHIVSGNTENKIYV 319 (433)
T ss_dssp TEEEEECCCCS-EEEEEEECT--TSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEE-EEEECEEEEEECSSTTEEEE
T ss_pred CcEEEEecCCC-CceEEEEcC--CCCEEEEEECCCCccccCCCeEEEEECCCCcEEeec-cCCCCcceEEECCCCCEEEE
Confidence 88887777654 589999977 567888887 4889999999887665544 23446889999999987765
Q ss_pred eecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC---------------CCcEEEEECCCCeee
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE---------------DSQIKFWDMDNVNIL 620 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~---------------dg~i~iwd~~~~~~~ 620 (1101)
.+. .++.|++||+.+++.+..+... ..+..++|+|+++++++++. ||.|++||..+++.+
T Consensus 320 ~~~---~~~~v~v~d~~~~~~~~~~~~~--~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~ 394 (433)
T 3bws_A 320 SDM---CCSKIEVYDLKEKKVQKSIPVF--DKPNTIALSPDGKYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVK 394 (433)
T ss_dssp EET---TTTEEEEEETTTTEEEEEEECS--SSEEEEEECTTSSEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEE
T ss_pred Eec---CCCEEEEEECCCCcEEEEecCC--CCCCeEEEcCCCCEEEEEecCCCccccccccccccceEEEEEECCCCcEE
Confidence 543 4889999999999988887632 36888999999999998876 579999999999998
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEEc-CCcEEEEEcc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~ 659 (1101)
..+.... .+.+++|+|+|++|++++. |+.|++|++.
T Consensus 395 ~~~~~~~---~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~ 431 (433)
T 3bws_A 395 EFWEAGN---QPTGLDVSPDNRYLVISDFLDHQIRVYRRD 431 (433)
T ss_dssp EEEECSS---SEEEEEECTTSCEEEEEETTTTEEEEEEET
T ss_pred EEecCCC---CCceEEEcCCCCEEEEEECCCCeEEEEEec
Confidence 8887532 5789999999999998875 9999999975
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.96 E-value=3.4e-27 Score=247.31 Aligned_cols=282 Identities=14% Similarity=0.112 Sum_probs=205.2
Q ss_pred eEEEEEeCCCC---EEEEEeCCCcEEEEECCCC---eeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 588 NGVVQFDTTQN---HFLAVGEDSQIKFWDMDNV---NILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 588 v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~---~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+..+.|-..+- -+++++ ...|++|+..++ +++++...+.. +|..+.+.||-.-|++..-.
T Consensus 42 ~~~~~~~~~~~~~~~~~~~~-~~~v~lw~~~~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~~~~~~~~----------- 107 (356)
T 2w18_A 42 VSAMFWERAGCKEPCIITAC-EDVVSLWKALDAWQWEKLYTWHFAEV--PVLQIVPVPDVYNLVCVALG----------- 107 (356)
T ss_dssp EEEEEEC----CEEEEEEEE-SSEEEEEEESSSSBEEEEEEEECCSS--CEEEECCCTTCCSCEEEEEC-----------
T ss_pred EeeeeeccCCCCccEEEEec-cceEEEcccCCCccceeeEEEeccCc--eeEEEEEcCcccceeeeeec-----------
Confidence 34455544332 345555 568999999998 78888877644 79999999976544432210
Q ss_pred ccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEE
Q 001319 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVV 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 741 (1101)
.-+...|.
T Consensus 108 ------------------------------------------------------------------------~~~~~~v~ 115 (356)
T 2w18_A 108 ------------------------------------------------------------------------NLEIREIR 115 (356)
T ss_dssp ------------------------------------------------------------------------SSSEEEEE
T ss_pred ------------------------------------------------------------------------cccccceE
Confidence 11455677
Q ss_pred EEEeecC----cccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCC
Q 001319 742 RLLYTNS----AVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDS 817 (1101)
Q Consensus 742 ~~~~s~~----~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~ 817 (1101)
.++++|+ +..++.++.+ +++|++ ++|+
T Consensus 116 sla~spd~~~~~~~l~s~g~~--~~v~~l-----------------------------------------------~~g~ 146 (356)
T 2w18_A 116 ALFCSSDDESEKQVLLKSGNI--KAVLGL-----------------------------------------------TKRR 146 (356)
T ss_dssp EECC------CCEEEEEEEEE--EEEEEE-----------------------------------------------TTTE
T ss_pred EEEECCCccccccEEEeCCCe--EEEEec-----------------------------------------------CCCc
Confidence 8888888 7777776643 555532 4677
Q ss_pred eEEEEc---CCeEEEEEC-CCceEEEEeeCCCCCeeEEEEec--CCCCEEEEEeCCCcEEEEEeecceEEEeeccCC---
Q 001319 818 YVMSAT---GGKISLFNM-MTFKVMTTFMSPPPASTFLAFHP--QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ--- 888 (1101)
Q Consensus 818 ~la~~~---dg~i~vwd~-~~~~~~~~~~~~~~~i~~l~~s~--~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~--- 888 (1101)
++.++. |+.|++|++ .+|+.+..+.+|...++.++|++ +++.+||+|+.|++|+|||+.+|+++..+.+|.
T Consensus 147 lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v 226 (356)
T 2w18_A 147 LVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQ 226 (356)
T ss_dssp EEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---
T ss_pred EEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcce
Confidence 777754 888999999 55888888889999999888887 467999999999999999999999999998754
Q ss_pred CCeeEEEEcCCCCEE------------EEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-
Q 001319 889 KRITGLAFSTSLNIL------------VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l------------~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 955 (1101)
..+.+++|+|||+++ ++|+.|++|++||..+++.........+.++. ... +..+.++.++++++
T Consensus 227 ~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~Gh~-~~~--lsg~~sg~~lASgS~ 303 (356)
T 2w18_A 227 ASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPGQA-GRF--LEGDVKDHCAAAILT 303 (356)
T ss_dssp CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTTCC-CCE--EEEEEETTEEEEEET
T ss_pred eeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCCCc-cee--EccccCCCEEEEEcC
Confidence 367788999999876 66889999999999998866544433344543 222 33344477888865
Q ss_pred CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 956 ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 956 d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
|++|+|||+.+++.+..+..|. ...+.+++|||||++|++|+.|++|+|||+
T Consensus 304 DgTIkIWDl~tGk~l~tL~gH~--~~vvs~vafSPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 304 SGTIAIWDLLLGQCTALLPPVS--DQHWSFVKWSGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp TSCEEEEETTTCSEEEEECCC----CCCCEEEECSSSSEEEEECTTSCEEEEEE
T ss_pred CCcEEEEECCCCcEEEEecCCC--CCeEEEEEECCCCCEEEEEECCCcEEEecC
Confidence 9999999999999999998653 334556999999999999999999999996
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=279.08 Aligned_cols=265 Identities=14% Similarity=0.243 Sum_probs=215.1
Q ss_pred eeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 337 VAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 337 ~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
....++|.+.|++++|+|++..++|+|+.||.|+|||+.+....... .........+.+|...|.+++|+|
T Consensus 121 ~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~---------~~~~~~~~~~~~h~~~v~~l~~~~ 191 (430)
T 2xyi_A 121 IEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEP---------SGECQPDLRLRGHQKEGYGLSWNP 191 (430)
T ss_dssp EEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCT---------TCCCCCSEEEECCSSCCCCEEECT
T ss_pred EEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCc---------cccCCCcEEecCCCCCeEEEEeCC
Confidence 45667899999999999985558899999999999999763111000 000001224778999999999999
Q ss_pred CCC-EEEEEECCCeEEEEeecCCccc----ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC---cee
Q 001319 417 DGN-YVGVAFTKHLIQLYSYAGSNDL----RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG---RKL 487 (1101)
Q Consensus 417 dg~-~las~~~d~~i~vwd~~~~~~~----~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~---~~~ 487 (1101)
++. +|++|+.||.|++||+.++... .....+.+|...|.+++|+|++.. +|++++.|+.|++|| .++ +.+
T Consensus 192 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~-~l~s~~~dg~i~i~d~~~~~~~~~~ 270 (430)
T 2xyi_A 192 NLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHES-LFGSVADDQKLMIWDTRNNNTSKPS 270 (430)
T ss_dssp TSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTT-EEEEEETTSEEEEEETTCSCSSSCS
T ss_pred CCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCC-EEEEEeCCCeEEEEECCCCCCCcce
Confidence 998 9999999999999999885432 223457799999999999995444 899999999999999 555 577
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-CCeeeeccCCCCceEEEEEccCCC-EEEEeecCCCCCce
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-MGSRVDYDAPGHWCTTMLYSADGS-RLFSCGTSKDGDSF 565 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~~~v~~~~~s~d~~-~l~~~~~~~~~~~~ 565 (1101)
..+..|...|.+++|++.. ..++++++.||.|++||++. ......+..|...|.+++|+|+++ ++++++. ++.
T Consensus 271 ~~~~~~~~~v~~i~~~p~~-~~~l~tg~~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~----d~~ 345 (430)
T 2xyi_A 271 HTVDAHTAEVNCLSFNPYS-EFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGT----DRR 345 (430)
T ss_dssp EEEECCSSCEEEEEECSSC-TTEEEEEETTSEEEEEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEET----TSC
T ss_pred eEeecCCCCeEEEEeCCCC-CCEEEEEeCCCeEEEEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeC----CCc
Confidence 8888999999999998853 24789999999999999998 455677778889999999999996 5777764 889
Q ss_pred EEEEeCCC--------------CeeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 001319 566 LVEWNESE--------------GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 566 i~iwd~~~--------------~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1101)
|++||+.. .+.+..+.+|.. .+..++|+|+++ .+++++.||.|++|++...
T Consensus 346 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 346 LHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTA-KISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp CEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSS-CEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred EEEEeCCCCccccCccccccCCcceEEEcCCCCC-CceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 99999987 356677777766 799999999999 8899999999999998754
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=262.42 Aligned_cols=327 Identities=10% Similarity=0.099 Sum_probs=256.1
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEE-EEeccCCeEEEEecCCCCeeeeccCCCCceEEE
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM 544 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~ 544 (1101)
++++++.|+.|++|| .+++.+..+.+|. .+.+++|++ ++.++ ++++.|+.|++||+.+++....+..+. .+.++
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~~~~-~~~~~~~s~--dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~ 79 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIPVGS-NPMGAVISP--DGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGV 79 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEECSS-SEEEEEECT--TSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEE
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEeecCC-CcceEEECC--CCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-Cccce
Confidence 789999999999999 8888888888775 489999987 55665 677899999999999888877776555 89999
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEE-EEEeCCCcEEEEECCCCeeeEee
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHF-LAVGEDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l-~~~~~dg~i~iwd~~~~~~~~~~ 623 (1101)
+|+|+++++++++. .++.|++||+.+++.+..+..+. .+..++|+|+++++ ++++.++.|++||+.+++.+..+
T Consensus 80 ~~spdg~~l~~~~~---~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~ 154 (391)
T 1l0q_A 80 AVSPDGKQVYVTNM---ASSTLSVIDTTSNTVAGTVKTGK--SPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV 154 (391)
T ss_dssp EECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred EECCCCCEEEEEEC---CCCEEEEEECCCCeEEEEEeCCC--CcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEE
Confidence 99999999876653 36899999999999988887654 57889999999988 57778999999999999988887
Q ss_pred ccCCCCCCCCeeEEecCCCEE-EEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcc
Q 001319 624 DAEGGLPNLPRLRFSKEGNLL-AVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCK 702 (1101)
Q Consensus 624 ~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~ 702 (1101)
..+. .+.+++|+|+++.+ ++++.++.|++||+.++. ....
T Consensus 155 ~~~~---~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~-~~~~----------------------------------- 195 (391)
T 1l0q_A 155 SVGR---SPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS-VIDT----------------------------------- 195 (391)
T ss_dssp ECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTTE-EEEE-----------------------------------
T ss_pred ecCC---CcceEEECCCCCEEEEEeCCCCEEEEEECCCCe-EEEE-----------------------------------
Confidence 7643 46899999999988 566778999999986541 0000
Q ss_pred eeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecc
Q 001319 703 VERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAV 782 (1101)
Q Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~ 782 (1101)
.
T Consensus 196 -------------------------------------------------------------~------------------ 196 (391)
T 1l0q_A 196 -------------------------------------------------------------V------------------ 196 (391)
T ss_dssp -------------------------------------------------------------E------------------
T ss_pred -------------------------------------------------------------E------------------
Confidence 0
Q ss_pred ccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc----CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC
Q 001319 783 PQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT----GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 858 (1101)
Q Consensus 783 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 858 (1101)
.+...+.+++|+|+|+++++++ ++.|++||+.+++.+..+..+. .+.+++|+| ++
T Consensus 197 -------------------~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~-~~~~~~~s~-dg 255 (391)
T 1l0q_A 197 -------------------KVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP-DPAGIAVTP-DG 255 (391)
T ss_dssp -------------------ECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS-SEEEEEECT-TS
T ss_pred -------------------ecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCC-CccEEEEcc-CC
Confidence 0233467788999998877764 6889999999999988888754 578999999 77
Q ss_pred CEE-EEEeCCCcEEEEEeecceEEEeeccCCCCee---EEEEcC------------CC----------CEEEEEeCCCcE
Q 001319 859 NII-AIGTEDSTIHIYNVRVDEVKSKLKGHQKRIT---GLAFST------------SL----------NILVSSGADAQL 912 (1101)
Q Consensus 859 ~~l-a~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~---~l~~s~------------d~----------~~l~s~s~Dg~v 912 (1101)
++| ++++.|+.|++||+.+++.+..+..|..+.. .+.+.| +. ..+...+.|..+
T Consensus 256 ~~l~~s~~~d~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~fs~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (391)
T 1l0q_A 256 KKVYVALSFXNTVSVIDTATNTITATMAVGKNPYASGQFIGSIPVQPVYPSADFKSNITSGYIFLSEPVQFTDLSKDATE 335 (391)
T ss_dssp SEEEEEETTTTEEEEEETTTTEEEEEEECSSSEECCSSCEEECSSCCCCCBCCEEESCCSSEEETTCCEEEEECCBSCSE
T ss_pred CEEEEEcCCCCEEEEEECCCCcEEEEEECCcCCCccceeeecccccccccccccccccccccccccceEEEEeCCCCceE
Confidence 766 6778899999999999999988877755431 122222 11 346666778999
Q ss_pred EEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 913 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 913 ~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
++|++..+.... ..-....|+++|.+.+.
T Consensus 336 ~~W~~~~g~~~~------------~~~~~~~~~~~g~y~~~ 364 (391)
T 1l0q_A 336 WKWDFGDGSSSK------------KQNPTHTYSETGIYTVR 364 (391)
T ss_dssp EEEECSSSCEEC------------SSSCEECCSSCEEEEEE
T ss_pred EEEECCCCcccC------------cCCCeEEeCCCceEEEE
Confidence 999998865311 12234679999988775
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-27 Score=264.91 Aligned_cols=294 Identities=11% Similarity=0.094 Sum_probs=204.9
Q ss_pred EEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEE
Q 001319 522 AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601 (1101)
Q Consensus 522 ~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 601 (1101)
+|.+.+.........|...|.+++|+|||++|++++ +..+++||..+++.......+ .+..+++.++++.++
T Consensus 3 i~s~~~~~~~~~~~~h~~~V~~v~fs~dg~~la~g~-----~~~~~iw~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 74 (355)
T 3vu4_A 3 LGSMITRNPIVPENHVSNPVTDYEFNQDQSCLILST-----LKSFEIYNVHPVAHIMSQEMR---HLSKVRMLHRTNYVA 74 (355)
T ss_dssp ----------------CCCCCEEEECTTSSEEEEEC-----SSEEEEEEETTEEEEEEEECS---CCCEEEECTTSSEEE
T ss_pred cccccccCCccccccCCCceEEEEECCCCCEEEEEc-----CCEEEEEecCCcceeeeeecC---CeEEEEEcCCCCEEE
Confidence 355555555556677888999999999999999986 335789999988776654432 467788989888885
Q ss_pred -EEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcc
Q 001319 602 -AVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPI 680 (1101)
Q Consensus 602 -~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v 680 (1101)
+++.|++|++||..+++.+..+... ..|.+++|+++. ++++ .++.|++||+.+....+..+..
T Consensus 75 ~~~~~d~~v~iWd~~~~~~~~~~~~~---~~v~~v~~~~~~--~~~~-~~~~i~i~d~~~~~~~~~~~~~---------- 138 (355)
T 3vu4_A 75 FVTGVKEVVHIWDDVKKQDVSRIKVD---APVKDLFLSREF--IVVS-YGDVISVFKFGNPWKRITDDIR---------- 138 (355)
T ss_dssp EECSSTTEEEEEETTTTEEEEEEECS---SCEEEEEECSSE--EEEE-ETTEEEEEESSTTCCBSSCCEE----------
T ss_pred EEECCccEEEEEECCCCcEEEEEECC---CceEEEEEcCCE--EEEE-EcCEEEEEECCCCceeeEEecc----------
Confidence 5778899999999999999888743 368999998764 4444 4789999998765211111100
Q ss_pred eeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCe
Q 001319 681 ESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGV 760 (1101)
Q Consensus 681 ~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~ 760 (1101)
.
T Consensus 139 ----------------------------------------------------------~--------------------- 139 (355)
T 3vu4_A 139 ----------------------------------------------------------F--------------------- 139 (355)
T ss_dssp ----------------------------------------------------------E---------------------
T ss_pred ----------------------------------------------------------C---------------------
Confidence 0
Q ss_pred EEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE--c-CCeEEEEECCCce-
Q 001319 761 QKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA--T-GGKISLFNMMTFK- 836 (1101)
Q Consensus 761 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~--~-dg~i~vwd~~~~~- 836 (1101)
...+++++ .+++++ + +|.|++||+.++.
T Consensus 140 ----------------------------------------------~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~ 171 (355)
T 3vu4_A 140 ----------------------------------------------GGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGS 171 (355)
T ss_dssp ----------------------------------------------EEEEEEET--TEEEEEESSCTTCEEEEECCC---
T ss_pred ----------------------------------------------CceEEEEc--cEEEEeCCCcCcEEEEEECCCCCc
Confidence 01122222 233332 2 4555555555433
Q ss_pred --------------E-EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCc-EEEEEeecceEEEeec-c-CCCCeeEEEEcC
Q 001319 837 --------------V-MTTFMSPPPASTFLAFHPQDNNIIAIGTEDST-IHIYNVRVDEVKSKLK-G-HQKRITGLAFST 898 (1101)
Q Consensus 837 --------------~-~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~-v~iwd~~~~~~~~~~~-~-h~~~V~~l~~s~ 898 (1101)
+ +..+.+|...|++++|+| ++++||+|+.||+ |+|||+.+++++..+. + |.+.|.+++|+|
T Consensus 172 ~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~-~g~~l~s~s~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~ 250 (355)
T 3vu4_A 172 ATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNR-KSDMVATCSQDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWST 250 (355)
T ss_dssp ---------------CCEEECCCSSCEEEEEECT-TSSEEEEEETTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEECT
T ss_pred cccccccccccccCcccEEEEccCCceEEEEECC-CCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEECC
Confidence 2 677889999999999999 9999999999998 9999999999999998 6 999999999999
Q ss_pred CCCEEEEEeCCCcEEEEECCCCccccceEE------------------eecCCCCCCCcceEEEcCCCCEEEEEe-CCeE
Q 001319 899 SLNILVSSGADAQLCVWSIDTWEKRKSVTI------------------HIPAGKTPTGDTRVQFNADQVRMLVVH-ETQL 959 (1101)
Q Consensus 899 d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~------------------~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i 959 (1101)
|+++|++++.|++|++||+..+.......+ ..... .......++|++|+..++++. |+.+
T Consensus 251 ~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~d~~~l~~~~~dg~~ 329 (355)
T 3vu4_A 251 DGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFKLSVD-KHVRGCKIAWISESSLVVVWPHTRMI 329 (355)
T ss_dssp TSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEECCCC-TTCCCCEEEESSSSEEEEEETTTTEE
T ss_pred CCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEEeccC-CCCCceEEEEeCCCCEEEEEeCCCeE
Confidence 999999999999999999987643322111 11111 112347799999999999965 9999
Q ss_pred EEEEcCCce
Q 001319 960 AIYDASKME 968 (1101)
Q Consensus 960 ~v~d~~~~~ 968 (1101)
++|++..++
T Consensus 330 ~~~~~~~~~ 338 (355)
T 3vu4_A 330 ETFKVVFDD 338 (355)
T ss_dssp EEEEEEEET
T ss_pred EEEEEEcCC
Confidence 999986543
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=2.3e-27 Score=272.54 Aligned_cols=253 Identities=15% Similarity=0.232 Sum_probs=211.4
Q ss_pred cccccCCccEEEEEEccC-CCEEEEEECCCeEEEEeecCC-------cccccceeeecccCcEEEEEEecCCCceEEEEe
Q 001319 400 SIFKDVPISVSRVAWSPD-GNYVGVAFTKHLIQLYSYAGS-------NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spd-g~~las~~~d~~i~vwd~~~~-------~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~ 471 (1101)
....+|.+.|++++|+|+ +.+||+|+.||.|++||+.+. ........+.+|...|.+++|+|++.. +|++|
T Consensus 122 ~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~-~l~s~ 200 (430)
T 2xyi_A 122 EIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNG-YLLSA 200 (430)
T ss_dssp EEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTT-EEEEE
T ss_pred EEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCC-eEEEE
Confidence 346779999999999997 789999999999999999862 112333468899999999999999876 69999
Q ss_pred cCCceEEEEE-cCCce-------eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCC---CeeeeccCCCCc
Q 001319 472 GDDKLIKVWE-LSGRK-------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM---GSRVDYDAPGHW 540 (1101)
Q Consensus 472 ~~d~~v~iwd-~~~~~-------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~---~~~~~~~~~~~~ 540 (1101)
+.||.|++|| .++.. ...+.+|...|.+++|++. ++.++++++.|+.|++||+++. .....+..+...
T Consensus 201 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~-~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~ 279 (430)
T 2xyi_A 201 SDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLL-HESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAE 279 (430)
T ss_dssp CTTSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSS-CTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSC
T ss_pred eCCCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCC-CCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCC
Confidence 9999999999 44221 4567789999999999885 3479999999999999999987 455667788889
Q ss_pred eEEEEEccCCC-EEEEeecCCCCCceEEEEeCCC-CeeEEEecccCCcceEEEEEeCCCC-EEEEEeCCCcEEEEECCCC
Q 001319 541 CTTMLYSADGS-RLFSCGTSKDGDSFLVEWNESE-GTIKRTYAGFRKKSNGVVQFDTTQN-HFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 541 v~~~~~s~d~~-~l~~~~~~~~~~~~i~iwd~~~-~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~~~dg~i~iwd~~~~ 617 (1101)
|++++|+|++. .+++++. ++.|++||+++ +..+..+.+|.. .+.+++|+|+++ .+++++.||.|++||+...
T Consensus 280 v~~i~~~p~~~~~l~tg~~----dg~v~vwd~~~~~~~~~~~~~h~~-~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~ 354 (430)
T 2xyi_A 280 VNCLSFNPYSEFILATGSA----DKTVALWDLRNLKLKLHSFESHKD-EIFQVQWSPHNETILASSGTDRRLHVWDLSKI 354 (430)
T ss_dssp EEEEEECSSCTTEEEEEET----TSEEEEEETTCTTSCSEEEECCSS-CEEEEEECSSCTTEEEEEETTSCCEEEEGGGT
T ss_pred eEEEEeCCCCCCEEEEEeC----CCeEEEEeCCCCCCCeEEeecCCC-CEEEEEECCCCCCEEEEEeCCCcEEEEeCCCC
Confidence 99999999998 5777775 89999999998 567888888876 899999999985 5888999999999999872
Q ss_pred --------------eeeEeeccCCCCCCCCeeEEecCCC-EEEEEEcCCcEEEEEcccc
Q 001319 618 --------------NILTSTDAEGGLPNLPRLRFSKEGN-LLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 618 --------------~~~~~~~~~~~~~~v~~v~~s~~g~-~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.+.....+ ...|.+++|+|++. +|++++.||.|++|++...
T Consensus 355 ~~~~~~~~~~~~~~~~~~~~~~h--~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~~ 411 (430)
T 2xyi_A 355 GEEQSTEDAEDGPPELLFIHGGH--TAKISDFSWNPNEPWIICSVSEDNIMQVWQMAEN 411 (430)
T ss_dssp TCCCCHHHHHHCCTTEEEECCCC--SSCEEEEEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred ccccCccccccCCcceEEEcCCC--CCCceEEEECCCCCCEEEEEECCCCEEEeEcccc
Confidence 344444443 44799999999999 9999999999999998755
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.4e-28 Score=297.47 Aligned_cols=253 Identities=19% Similarity=0.294 Sum_probs=213.8
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecC--CCceEEEEecCCceEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYP--NKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d--~~~~~l~s~~~d~~v~ 478 (1101)
++.+|.+.|++++|+|+|++||+|+.||.|+|||+.++.. .....+.+|.+.|++++|+|+ ++ +|++|+.||+|+
T Consensus 4 ~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~~--~l~s~s~Dg~I~ 80 (753)
T 3jro_A 4 IANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDTLTGHEGPVWRVDWAHPKFGT--ILASCSYDGKVL 80 (753)
T ss_dssp ----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEE-EEEEEECCCSSCEEEEEECCTTSCS--EEEEEETTSCEE
T ss_pred ecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCC-ccceeccCCcCceEEEEecCCCCCC--EEEEEeCCCeEE
Confidence 4789999999999999999999999999999999985432 223368899999999999998 77 899999999999
Q ss_pred EEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCC--eeeeccCCCCceEEEEEcc-----
Q 001319 479 VWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSA----- 548 (1101)
Q Consensus 479 iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~----- 548 (1101)
+|| .+++ .+..+.+|...|.+++|+|+.++.++++++.||.|++||+.... ....+..+...|.+++|+|
T Consensus 81 vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~ 160 (753)
T 3jro_A 81 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE 160 (753)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC---
T ss_pred EEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccc
Confidence 999 6665 67888899999999999986437899999999999999998873 3445667888999999999
Q ss_pred --------CCCEEEEeecCCCCCceEEEEeCCCC----eeEEEecccCCcceEEEEEeCC---CCEEEEEeCCCcEEEEE
Q 001319 549 --------DGSRLFSCGTSKDGDSFLVEWNESEG----TIKRTYAGFRKKSNGVVQFDTT---QNHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 549 --------d~~~l~~~~~~~~~~~~i~iwd~~~~----~~~~~~~~~~~~~v~~~~~~~~---~~~l~~~~~dg~i~iwd 613 (1101)
++.++++++. ++.|++||+.++ .....+.+|.. .+.+++|+|+ ++++++++.||.|++||
T Consensus 161 ~~~~~~~~d~~~l~sgs~----dg~I~iwd~~~~~~~~~~~~~~~~h~~-~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd 235 (753)
T 3jro_A 161 DGEHNGTKESRKFVTGGA----DNLVKIWKYNSDAQTYVLESTLEGHSD-WVRDVAWSPTVLLRSYLASVSQDRTCIIWT 235 (753)
T ss_dssp ------CGGGCCEEEEET----TSCEEEEEEETTTTEEEEEEEECCCSS-CEEEEEECCCCSSSEEEEEEESSSCEEEEE
T ss_pred ccccccCCCCCEEEEEEC----CCeEEEEeccCCcccceeeeeecCCCC-cEEEEEeccCCCCCCEEEEEecCCEEEEec
Confidence 5899999986 899999999877 56677788876 8999999999 89999999999999999
Q ss_pred CCCCeee---EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 614 MDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 614 ~~~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.++... .......+...|.+++|+|+|+++++++.||.|++|++..+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~ 286 (753)
T 3jro_A 236 QDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 286 (753)
T ss_dssp ESSSSSCCBCCBSSSSCCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSS
T ss_pred CCCCCCcceeEEeccCCCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCC
Confidence 9886421 12222334557999999999999999999999999998865
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-27 Score=264.57 Aligned_cols=279 Identities=8% Similarity=0.057 Sum_probs=217.4
Q ss_pred EEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC
Q 001319 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA 536 (1101)
Q Consensus 458 ~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 536 (1101)
.+.+++. ++++|+.||+|++|| .+++.+..+. ...|.++.++|. +++++.|++|++|+...
T Consensus 43 ~~~~d~~--~l~sg~~Dg~v~iwd~~~~~~~~~~~--~~~v~~~~~~~~-----~~s~s~D~~i~~w~~~~--------- 104 (343)
T 3lrv_A 43 SMYYDKW--VCMCRCEDGALHFTQLKDSKTITTIT--TPNPRTGGEHPA-----IISRGPCNRLLLLYPGN--------- 104 (343)
T ss_dssp SSSEEEE--EEEEEEETTEEEEEEESSSSCEEEEE--EECCCTTCCCCS-----EEEECSTTEEEEEETTT---------
T ss_pred hhcCCCC--EEEEECCCCcEEEEECCCCcEEEEEe--cCCceeeeeCCc-----eEEecCCCeEEEEEccC---------
Confidence 4455677 899999999999999 8888888876 567888888763 99999999999998632
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC--CCCEEEEEeCCCcEEEEEC
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT--TQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+.+||..+++.+..+...+...+.+++|+| +++++++++.||.|++||+
T Consensus 105 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~ 156 (343)
T 3lrv_A 105 ----------------------------QITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSY 156 (343)
T ss_dssp ----------------------------EEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEES
T ss_pred ----------------------------ceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEEC
Confidence 3677898888877776633344799999999 9999999999999999999
Q ss_pred CCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccc
Q 001319 615 DNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
.+++.......+ +...|.+++|+|+|.+|++|+.||.|++||+.++......+..
T Consensus 157 ~~~~~~~~~~~~-~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~------------------------ 211 (343)
T 3lrv_A 157 EDDSQYIVHSAK-SDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPV------------------------ 211 (343)
T ss_dssp SSSCEEEEECCC-SSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCC------------------------
T ss_pred CCCcEEEEEecC-CCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEec------------------------
Confidence 999886665433 2336899999999999999999999999998765211000000
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCC
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 774 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~ 774 (1101)
T Consensus 212 -------------------------------------------------------------------------------- 211 (343)
T 3lrv_A 212 -------------------------------------------------------------------------------- 211 (343)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC---CCCCee--
Q 001319 775 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS---PPPAST-- 849 (1101)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~---~~~~i~-- 849 (1101)
+|...|.+++|+|+|.+|++++++.|++||+.+++....+.. |...+.
T Consensus 212 ---------------------------~h~~~v~~l~fs~~g~~l~s~~~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~ 264 (343)
T 3lrv_A 212 ---------------------------DEEAKIKEVKFADNGYWMVVECDQTVVCFDLRKDVGTLAYPTYTIPEFKTGTV 264 (343)
T ss_dssp ---------------------------CTTSCEEEEEECTTSSEEEEEESSBEEEEETTSSTTCBSSCCCBC-----CCE
T ss_pred ---------------------------cCCCCEEEEEEeCCCCEEEEEeCCeEEEEEcCCCCcceeecccccccccccce
Confidence 167789999999999999999877999999988876555443 333444
Q ss_pred EEEEecCCCCEEEEEeC-CCcEEEEEeecceEEEeeccCCCCeeEEEEcC---CCCEEEEEeCCCcEEEEECCC
Q 001319 850 FLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKSKLKGHQKRITGLAFST---SLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 850 ~l~~s~~~~~~la~g~~-dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~---d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
+++|+| ++++|++++. |+.|+||++.+....... .++..++|++ +.+.+++++.||.+.++-...
T Consensus 265 ~~~~~~-~g~~l~~~s~~d~~i~v~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 265 TYDIDD-SGKNMIAYSNESNSLTIYKFDKKTKNWTK----DEESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEEECT-TSSEEEEEETTTTEEEEEEECTTTCSEEE----EEEEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred EEEECC-CCCEEEEecCCCCcEEEEEEcccccceEe----cCceeEecCccccccceeEEEecCCceEEEEecC
Confidence 699999 9999999998 999999999765433222 5678889988 889999999999999886544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.8e-28 Score=271.96 Aligned_cols=303 Identities=12% Similarity=0.090 Sum_probs=199.9
Q ss_pred CcEEEEEE---ecCCceEEEEEeccCcEEEEecCCCceecc-----ccceeecccccC-----ccccccccccCCccEEE
Q 001319 345 STVISMDF---HPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPFKIWDMAACS-----LPFQASIFKDVPISVSR 411 (1101)
Q Consensus 345 ~~V~~v~f---spdg~~llasg~~d~~i~iwd~~~~~~~~~-----~~~~~~d~~~~~-----~~~~~~~~~~h~~~v~~ 411 (1101)
....++.| +|++..++++| .++.|.+|+......... .....+...... .+........|...+..
T Consensus 16 ~~p~~~~w~~~~~~~~~l~a~g-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (393)
T 4gq1_A 16 VRPYTTTWCSQSPSCSNLLAIG-HDTGITIYCASEEQTPGSTGLTLQELFTIQTGLPTLHLSFSSSCSYSENLHDGDGNV 94 (393)
T ss_dssp CCEEEEEECTTSGGGTTEEEEE-ESSEEEEEEEEECCSSSCCSEEEEEEEEEECSSCEEEEEECTTCEEECC--------
T ss_pred CCCeEEEEeCCCCCCCCEEEEE-CCCCEEEEECCCCCcccccccceeeeEEEecCCCeeeEeecCCccccccccCCCcce
Confidence 45556666 45555576665 678899998643322111 001111110000 00011123345556666
Q ss_pred EEEccCCCEEEEEECCCeEEEEeecCCcccc--cceeeecccCcEEEEEEec--------CCCceEEEEecCCceEEEEE
Q 001319 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAY--------PNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 412 ~~~spdg~~las~~~d~~i~vwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~--------d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+++++.+||+|+.|++|+|||+.+++... ....+.+|.+.|++++|+| |++ +|+||+.|++|+|||
T Consensus 95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~--~las~s~D~tv~~Wd 172 (393)
T 4gq1_A 95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQ--VIASVGDDCTLIIWR 172 (393)
T ss_dssp --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEE--EEEEEETTSEEEEEE
T ss_pred eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCC--EEEEEECCCeEEEEE
Confidence 6777788999999999999999999886543 2235779999999999998 777 899999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-------------------------c
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------------------------D 535 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------------------------~ 535 (1101)
.++.++..+.+|..+|.+++|+|.+ ..+|++++.|++|++||+.++...... .
T Consensus 173 ~~~~~~~~~~~~~~~~v~~v~~~p~~-~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 251 (393)
T 4gq1_A 173 LTDEGPILAGYPLSSPGISVQFRPSN-PNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSS 251 (393)
T ss_dssp EETTEEEEEEEECSSCEEEEEEETTE-EEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------
T ss_pred CCCCceeeeecCCCCCcEEEEECCCC-CceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeecc
Confidence 7888888888999999999998842 358999999999999999876543321 2
Q ss_pred CCCCceEEEEEc-cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEE------------------EEEeC-
Q 001319 536 APGHWCTTMLYS-ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGV------------------VQFDT- 595 (1101)
Q Consensus 536 ~~~~~v~~~~~s-~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~------------------~~~~~- 595 (1101)
.+...+.++.|+ +|++.+++++. ++.+++||+.+++....+..+.. .+.. ..++|
T Consensus 252 ~~~~~v~~v~~~~~dg~~l~s~s~----d~~i~vwd~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 252 GIASSLANVRWIGSDGSGILAMCK----SGAWLRWNLFANNDYNEISDSTM-KLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp CCSSSCSEEEEETTTTCEEEEECT----TSEEEEEEC--------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred cccccceeeeeecCCCCEEEEEeC----CCCEEEEECccCCCCceEeeecC-ccccEEEccccccccccCcceeEEEccC
Confidence 345567888886 79999999985 89999999998876666554432 1211 23333
Q ss_pred -CCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcc
Q 001319 596 -TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 596 -~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
++.++++|+.||.|++||..+++.......+.. .|.+++|+|||++||+++.+| +.+|.+.
T Consensus 327 ~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~~~~~--~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 327 YMDYFATAHSQHGLIQLINTYEKDSNSIPIQLGM--PIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTTEEEEEETTTTEEEEEETTCTTCCEEEEECSS--CEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCCEEEEEECCCCEEEEEECCCCcEEEEecCCCC--cEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 233556678999999999999988777665543 799999999999999998766 5566543
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=9.2e-27 Score=269.57 Aligned_cols=242 Identities=14% Similarity=0.093 Sum_probs=202.5
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeee--------------------------------------
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-------------------------------------- 448 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~-------------------------------------- 448 (1101)
.++.+++|+|||++|+++ .++.|++||+.+|+.......+.
T Consensus 5 ~p~~~v~~s~dg~~l~~~-~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (450)
T 2vdu_B 5 HPLQNLLTSRDGSLVFAI-IKNCILSFKYQSPNHWEFAGKWSDDFDKIQESRNTTAKEQQGQSSENENENKKLKSNKGDS 83 (450)
T ss_dssp CCCCEEEECSSSSEEEEE-ETTEEEEEEEETTTEEEEEEEEECCC-----------------------------------
T ss_pred ccEEEEEecCCCCEEEEE-eCCeEEEEECCCCCcceeeeecCCccccccccccccchhhccccccccccccccccCcCcc
Confidence 478899999999977666 57789999999998221111222
Q ss_pred ----------------cccCcEEEEEEecCCCceEEEEecCCceEEEEE-c--CCceeEEee--cCCcCeEEEecccCCC
Q 001319 449 ----------------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-L--SGRKLFNFE--GHEAPVYSICPHHKEN 507 (1101)
Q Consensus 449 ----------------~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~--~~~~~~~~~--~h~~~v~~v~~~~~~~ 507 (1101)
+|.+.|++++|+|+++. ++++|+.|+.|++|| . +++++..+. .|...|.+++|+| +
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~-l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp--~ 160 (450)
T 2vdu_B 84 IKRTAAKVPSPGLGAPPIYSYIRNLRLTSDESR-LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAE--D 160 (450)
T ss_dssp ----------------CCCCCEEEEEECTTSSE-EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECT--T
T ss_pred ccccCccccCCCCCCCccCCceEEEEEcCCCCE-EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcC--C
Confidence 34557999999999993 248999999999999 6 788888876 5778999999987 6
Q ss_pred ccEEEEeccCCeEEEEecCCCCeee----eccCCCCceEEEEEccC---CCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 508 IQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHWCTTMLYSAD---GSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 508 ~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~d---~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
+.+|++++.+|.|++|++.+..... .+..|...|.+++|+|+ +++|++++. ++.|++||+.+++.+..+
T Consensus 161 ~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~----d~~i~vwd~~~~~~~~~~ 236 (450)
T 2vdu_B 161 DTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDR----DEHIKISHYPQCFIVDKW 236 (450)
T ss_dssp SSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEET----TSCEEEEEESCTTCEEEE
T ss_pred CCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcC----CCcEEEEECCCCceeeee
Confidence 6899999999999999998776543 66678889999999999 999999986 889999999999988874
Q ss_pred -cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-----------------------CCCCCCCeeE
Q 001319 581 -AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----------------------GGLPNLPRLR 636 (1101)
Q Consensus 581 -~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----------------------~~~~~v~~v~ 636 (1101)
.+|.. .+.+++|+ ++++|++++.|+.|++||+.+++.+..+..+ .....|.+++
T Consensus 237 ~~~h~~-~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 314 (450)
T 2vdu_B 237 LFGHKH-FVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKII 314 (450)
T ss_dssp CCCCSS-CEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEE
T ss_pred ecCCCC-ceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEE
Confidence 46665 89999999 9999999999999999999999988777532 1123678999
Q ss_pred EecCCCEEEEEE-cCCcEEEEEc
Q 001319 637 FSKEGNLLAVTT-ADNGFKILAN 658 (1101)
Q Consensus 637 ~s~~g~~l~~~~-~d~~i~iwd~ 658 (1101)
|+|++++|++++ .++.|++|++
T Consensus 315 ~~~~~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 315 KSKNLPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp ECSSSSEEEEEETTCSEEEEEEE
T ss_pred EeCCCCEEEEEECCCCeEEEEEe
Confidence 999999999999 8999999998
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=266.28 Aligned_cols=267 Identities=8% Similarity=0.064 Sum_probs=210.6
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeE
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i 430 (1101)
.+.++++ ++++|+.||.|++||+.+++.+.. +. ...|.+++|+|+ +++|+.|++|
T Consensus 43 ~~~~d~~-~l~sg~~Dg~v~iwd~~~~~~~~~-------------------~~--~~~v~~~~~~~~---~~s~s~D~~i 97 (343)
T 3lrv_A 43 SMYYDKW-VCMCRCEDGALHFTQLKDSKTITT-------------------IT--TPNPRTGGEHPA---IISRGPCNRL 97 (343)
T ss_dssp SSSEEEE-EEEEEEETTEEEEEEESSSSCEEE-------------------EE--EECCCTTCCCCS---EEEECSTTEE
T ss_pred hhcCCCC-EEEEECCCCcEEEEECCCCcEEEE-------------------Ee--cCCceeeeeCCc---eEEecCCCeE
Confidence 4456676 679999999999999999877642 11 456778889988 9999999999
Q ss_pred EEEeec---------CCcccccceeeecccCcEEEEEEec--CCCceEEEEecCCceEEEEE-cCCceeEEee-cCCcCe
Q 001319 431 QLYSYA---------GSNDLRQHSQIDAHVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPV 497 (1101)
Q Consensus 431 ~vwd~~---------~~~~~~~~~~l~~h~~~V~~l~~s~--d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~-~h~~~v 497 (1101)
++|+.. +++.+.. ...+|.+.|.+++|+| +++ ++++++.|++|++|| .+++++.... .|...|
T Consensus 98 ~~w~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~~--~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i 173 (343)
T 3lrv_A 98 LLLYPGNQITILDSKTNKVLRE--IEVDSANEIIYMYGHNEVNTE--YFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEY 173 (343)
T ss_dssp EEEETTTEEEEEETTTCCEEEE--EECCCSSCEEEEECCC---CC--EEEEEETTCCEEEEESSSSCEEEEECCCSSCCC
T ss_pred EEEEccCceEEeecCCcceeEE--eecCCCCCEEEEEcCCCCCCC--EEEEEeCCCcEEEEECCCCcEEEEEecCCCCce
Confidence 999765 3332221 1226778999999999 998 899999999999999 7888766664 455689
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCee-eeccC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR-VDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~-~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.+++|+| ++.+|++|+.||.|++||++++... ..+.. |...|.+++|+|+|.+|++++ ++.|++||+++++
T Consensus 174 ~~~~~~p--dg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~-----~~~v~iwd~~~~~ 246 (343)
T 3lrv_A 174 SSGVLHK--DSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC-----DQTVVCFDLRKDV 246 (343)
T ss_dssp CEEEECT--TSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE-----SSBEEEEETTSST
T ss_pred EEEEECC--CCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe-----CCeEEEEEcCCCC
Confidence 9999987 6689999999999999999998877 67777 889999999999999999997 3389999999987
Q ss_pred eEEEecccCC--cce--EEEEEeCCCCEEEEEeC-CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec---CCCEEEEE
Q 001319 576 IKRTYAGFRK--KSN--GVVQFDTTQNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK---EGNLLAVT 647 (1101)
Q Consensus 576 ~~~~~~~~~~--~~v--~~~~~~~~~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~---~g~~l~~~ 647 (1101)
.+..+..+.. ..+ .+++|+|++++|++++. |+.+++|++......... .++..++|++ ++..++++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~i~v~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~l~~~ 320 (343)
T 3lrv_A 247 GTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNSLTIYKFDKKTKNWTK------DEESALCLQSDTADFTDMDVV 320 (343)
T ss_dssp TCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTEEEEEEECTTTCSEEE------EEEEECCC----CCCCEEEEE
T ss_pred cceeecccccccccccceEEEECCCCCEEEEecCCCCcEEEEEEcccccceEe------cCceeEecCccccccceeEEE
Confidence 7655543211 122 36999999999999988 999999999765443332 2456788888 88999999
Q ss_pred EcCCcEEEEEcc
Q 001319 648 TADNGFKILANA 659 (1101)
Q Consensus 648 ~~d~~i~iwd~~ 659 (1101)
+.|+.+.++-..
T Consensus 321 ~~d~~~~~~~~~ 332 (343)
T 3lrv_A 321 CGDGGIAAILKT 332 (343)
T ss_dssp EETTEEEEEEEC
T ss_pred ecCCceEEEEec
Confidence 999999887543
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=263.54 Aligned_cols=274 Identities=10% Similarity=0.083 Sum_probs=216.5
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccc-cCCccEEEEEEccCCCEEEEEECCCe
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFK-DVPISVSRVAWSPDGNYVGVAFTKHL 429 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~las~~~d~~ 429 (1101)
+|+|+++ ++++++.|++|.+||..+++.+.. +. ++. +.+++|||||++|++++.|++
T Consensus 144 ~~~p~~~-~~vs~~~d~~V~v~D~~t~~~~~~-------------------i~~g~~--~~~v~~spdg~~l~v~~~d~~ 201 (543)
T 1nir_A 144 DLDLPNL-FSVTLRDAGQIALVDGDSKKIVKV-------------------IDTGYA--VHISRMSASGRYLLVIGRDAR 201 (543)
T ss_dssp CCCGGGE-EEEEEGGGTEEEEEETTTCCEEEE-------------------EECSTT--EEEEEECTTSCEEEEEETTSE
T ss_pred ccCCCCE-EEEEEcCCCeEEEEECCCceEEEE-------------------EecCcc--cceEEECCCCCEEEEECCCCe
Confidence 3789886 778999999999999999887652 33 343 889999999999999999999
Q ss_pred EEEEee--cCCcccccceeeecccCcEEEEEEec----CCCceEEEEec-CCceEEEEE-cCCceeEEeecC--------
Q 001319 430 IQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAY----PNKLLCVVTCG-DDKLIKVWE-LSGRKLFNFEGH-------- 493 (1101)
Q Consensus 430 i~vwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~----d~~~~~l~s~~-~d~~v~iwd-~~~~~~~~~~~h-------- 493 (1101)
|.+||+ .+++.+. ++. +...+..++|+| ||+ ++++++ .+++|.+|| .+++++..+..+
T Consensus 202 V~v~D~~~~t~~~~~---~i~-~g~~p~~va~sp~~~~dg~--~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~ 275 (543)
T 1nir_A 202 IDMIDLWAKEPTKVA---EIK-IGIEARSVESSKFKGYEDR--YTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQT 275 (543)
T ss_dssp EEEEETTSSSCEEEE---EEE-CCSEEEEEEECCSTTCTTT--EEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCC
T ss_pred EEEEECcCCCCcEEE---EEe-cCCCcceEEeCCCcCCCCC--EEEEEEccCCeEEEEeccccccceeecccCcccCccc
Confidence 999999 7776655 454 445689999999 999 566666 589999999 899988887642
Q ss_pred --C-cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee--eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 494 --E-APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV--DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 494 --~-~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~--~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
. ..+.++.++++. +.++++...++.|.+||+.+.+... .+ .....+..++|+|+|+++++++. .++.|.+
T Consensus 276 ~~~~~~v~~i~~s~~~-~~~~vs~~~~g~i~vvd~~~~~~l~~~~i-~~~~~~~~~~~spdg~~l~va~~---~~~~v~v 350 (543)
T 1nir_A 276 YHPEPRVAAIIASHEH-PEFIVNVKETGKVLLVNYKDIDNLTVTSI-GAAPFLHDGGWDSSHRYFMTAAN---NSNKVAV 350 (543)
T ss_dssp EESCCCEEEEEECSSS-SEEEEEETTTTEEEEEECTTSSSCEEEEE-ECCSSCCCEEECTTSCEEEEEEG---GGTEEEE
T ss_pred cccCCceEEEEECCCC-CEEEEEECCCCeEEEEEecCCCcceeEEe-ccCcCccCceECCCCCEEEEEec---CCCeEEE
Confidence 2 268889998753 3677888899999999998765433 22 24556888999999998887654 3778999
Q ss_pred EeCCCCeeEEEecc----cCCcceEEEEEeCC-CCEEEEEe-CCCcEEEEECCC-------CeeeEeeccCCCCCCCCee
Q 001319 569 WNESEGTIKRTYAG----FRKKSNGVVQFDTT-QNHFLAVG-EDSQIKFWDMDN-------VNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 569 wd~~~~~~~~~~~~----~~~~~v~~~~~~~~-~~~l~~~~-~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v 635 (1101)
||..+++++..+.. |.. ....+ ++|+ +..++++. .|++|.+||..+ .+.+.++..++. .+..+
T Consensus 351 ~D~~tg~l~~~i~~g~~ph~g-~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~~~~~~~~~~~v~~l~~~g~--~~~~v 426 (543)
T 1nir_A 351 IDSKDRRLSALVDVGKTPHPG-RGANF-VHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQGG--GSLFI 426 (543)
T ss_dssp EETTTTEEEEEEECSSSBCCT-TCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCE
T ss_pred EECCCCeEEEeeccCCCCCCC-CCccc-CCCCCccEEEeccCCCceEEEEEeCCCCCchhcCeEEEEEEcCCC--CceEE
Confidence 99999999988875 322 12222 5787 44455554 689999999998 888899887654 57889
Q ss_pred EEecCCCEEEEEE-------cCCcEEEEEcccc
Q 001319 636 RFSKEGNLLAVTT-------ADNGFKILANAIG 661 (1101)
Q Consensus 636 ~~s~~g~~l~~~~-------~d~~i~iwd~~~~ 661 (1101)
+++|+|++|++++ .+++|.+||+.+.
T Consensus 427 ~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~ 459 (543)
T 1nir_A 427 KTHPKSSHLYVDTTFNPDARISQSVAVFDLKNL 459 (543)
T ss_dssp ECCTTCCEEEECCTTCSSHHHHTCEEEEETTCT
T ss_pred EcCCCCCcEEEecCCCCCcccCceEEEEECCCC
Confidence 9999999999987 2679999999876
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=3.8e-27 Score=266.78 Aligned_cols=249 Identities=6% Similarity=-0.073 Sum_probs=176.1
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc---
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP--- 416 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp--- 416 (1101)
...|...+....++++++ ++|+|+.|++|+|||..+++..... ....+.||.+.|.+++|+|
T Consensus 85 ~~~~~~~~~~~~~~~~~~-~las~~~d~~v~lw~~~~~~~~~~~--------------~~~~~~gH~~~v~~v~~~p~~~ 149 (393)
T 4gq1_A 85 ENLHDGDGNVNSSPVYSL-FLACVCQDNTVRLIITKNETIITQH--------------VLGGKSGHHNFVNDIDIADVYS 149 (393)
T ss_dssp CC----------CCEEEE-EEEEEETTSCEEEEEEETTEEEEEE--------------EECTTTSCSSCEEEEEEEEEEC
T ss_pred ccccCCCcceeecCCCCC-EEEEEeCCCcEEEEECCCCccceee--------------eecccCCCCCceEEEEEccccc
Confidence 334556666666777776 6799999999999999988654321 1124889999999999998
Q ss_pred -----CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE-
Q 001319 417 -----DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN- 489 (1101)
Q Consensus 417 -----dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~- 489 (1101)
||++||+|+.|++|+|||+.++..+. .+.+|...|.+++|+|++.. +|++|+.|++|++|| .+++....
T Consensus 150 ~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~---~~~~~~~~v~~v~~~p~~~~-~l~~~~~d~~v~~wd~~t~~~~~~~ 225 (393)
T 4gq1_A 150 ADNRLAEQVIASVGDDCTLIIWRLTDEGPIL---AGYPLSSPGISVQFRPSNPN-QLIVGERNGNIRIFDWTLNLSAEEN 225 (393)
T ss_dssp TTCSEEEEEEEEEETTSEEEEEEEETTEEEE---EEEECSSCEEEEEEETTEEE-EEEEEETTSEEEEEETTCCC-----
T ss_pred cccCCCCCEEEEEECCCeEEEEECCCCceee---eecCCCCCcEEEEECCCCCc-eEEecCCCCEEEEEECCCCcccccc
Confidence 89999999999999999999876555 56689999999999999865 799999999999999 66654322
Q ss_pred ------------------------eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEE-
Q 001319 490 ------------------------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTM- 544 (1101)
Q Consensus 490 ------------------------~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~- 544 (1101)
..+|...+.++.|.. +++..|++++.|+++++||+........+..+...+..+
T Consensus 226 ~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~-~dg~~l~s~s~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~ 304 (393)
T 4gq1_A 226 SQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIG-SDGSGILAMCKSGAWLRWNLFANNDYNEISDSTMKLGPKN 304 (393)
T ss_dssp -----CSCCCSEEEESGGGC------CCSSSCSEEEEET-TTTCEEEEECTTSEEEEEEC-------------------C
T ss_pred cccCCcccceEEecccccceeeeecccccccceeeeeec-CCCCEEEEEeCCCCEEEEECccCCCCceEeeecCccccEE
Confidence 246778888888863 377899999999999999998766555444443333222
Q ss_pred -----------------EEcc-CCC-EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC
Q 001319 545 -----------------LYSA-DGS-RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 545 -----------------~~s~-d~~-~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~ 605 (1101)
.+++ .+. ++++++ .++.|++||..+++....+.+|.. .|.+++|+|+|++|++++.
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs----~Dg~V~lwd~~~~~~~~~~~~~~~-~V~svafspdG~~LA~as~ 379 (393)
T 4gq1_A 305 LLPNVQGISLFPSLLGACPHPRYMDYFATAHS----QHGLIQLINTYEKDSNSIPIQLGM-PIVDFCWHQDGSHLAIATE 379 (393)
T ss_dssp CSCSEEEECSSCCSSCCEECSSCTTEEEEEET----TTTEEEEEETTCTTCCEEEEECSS-CEEEEEECTTSSEEEEEES
T ss_pred EccccccccccCcceeEEEccCCCCEEEEEEC----CCCEEEEEECCCCcEEEEecCCCC-cEEEEEEcCCCCEEEEEeC
Confidence 2332 333 445554 389999999999998888888876 8999999999999999987
Q ss_pred CCcEEEEEC
Q 001319 606 DSQIKFWDM 614 (1101)
Q Consensus 606 dg~i~iwd~ 614 (1101)
+| +.+|.+
T Consensus 380 ~G-v~lvrL 387 (393)
T 4gq1_A 380 GS-VLLTRL 387 (393)
T ss_dssp SE-EEEEEE
T ss_pred CC-eEEEEE
Confidence 76 555554
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-25 Score=259.34 Aligned_cols=325 Identities=14% Similarity=0.118 Sum_probs=252.0
Q ss_pred EEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEec--CCCCeeeec
Q 001319 458 AFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDY 534 (1101)
Q Consensus 458 ~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~ 534 (1101)
+|+|++. ++++++.|++|.+|| .+++++.++..+.. +..++|+| +|++|++++.|++|++||+ .+.+....+
T Consensus 144 ~~~p~~~--~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~sp--dg~~l~v~~~d~~V~v~D~~~~t~~~~~~i 218 (543)
T 1nir_A 144 DLDLPNL--FSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSA--SGRYLLVIGRDARIDMIDLWAKEPTKVAEI 218 (543)
T ss_dssp CCCGGGE--EEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECT--TSCEEEEEETTSEEEEEETTSSSCEEEEEE
T ss_pred ccCCCCE--EEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECC--CCCEEEEECCCCeEEEEECcCCCCcEEEEE
Confidence 3788887 899999999999999 89999999884333 88898977 7789999999999999999 777766666
Q ss_pred cCCCCceEEEEEcc----CCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc----------CCcceEEEEEeCCCCEE
Q 001319 535 DAPGHWCTTMLYSA----DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF----------RKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 535 ~~~~~~v~~~~~s~----d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~----------~~~~v~~~~~~~~~~~l 600 (1101)
. .+..+..++|+| ||+++++++. .++.|.+||..+++++..+..+ ....+..+.++|+++.+
T Consensus 219 ~-~g~~p~~va~sp~~~~dg~~l~v~~~---~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~ 294 (543)
T 1nir_A 219 K-IGIEARSVESSKFKGYEDRYTIAGAY---WPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEF 294 (543)
T ss_dssp E-CCSEEEEEEECCSTTCTTTEEEEEEE---ESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEE
T ss_pred e-cCCCcceEEeCCCcCCCCCEEEEEEc---cCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEE
Confidence 5 455689999999 9999998874 3789999999999999888652 23357789999987665
Q ss_pred E-EEeCCCcEEEEECCCCeeeE--eeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEccccccccccccCCCcccc
Q 001319 601 L-AVGEDSQIKFWDMDNVNILT--STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 601 ~-~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+ +...++.|.+||..+.+.+. .+.. ...+.+++|+|+|+++++++ .+++|.+||..++ +....+..
T Consensus 295 ~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~l~va~~~~~~v~v~D~~tg-~l~~~i~~------ 364 (543)
T 1nir_A 295 IVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRYFMTAANNSNKVAVIDSKDR-RLSALVDV------ 364 (543)
T ss_dssp EEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCEEEEEEGGGTEEEEEETTTT-EEEEEEEC------
T ss_pred EEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCEEEEEecCCCeEEEEECCCC-eEEEeecc------
Confidence 5 46689999999998866544 3332 22578999999999877665 5889999998876 22111100
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
+
T Consensus 365 -------------------------------------------------------------------------------g 365 (543)
T 1nir_A 365 -------------------------------------------------------------------------------G 365 (543)
T ss_dssp -------------------------------------------------------------------------------S
T ss_pred -------------------------------------------------------------------------------C
Confidence 0
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC-CCeEEEEc--CCeEEEEECC
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSYVMSAT--GGKISLFNMM 833 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~~~--dg~i~vwd~~ 833 (1101)
. ..|......+ ++|+ |.+++++. +++|.+||+.
T Consensus 366 ~-------------------------------------------~ph~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~ 401 (543)
T 1nir_A 366 K-------------------------------------------TPHPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTD 401 (543)
T ss_dssp S-------------------------------------------SBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECC
T ss_pred C-------------------------------------------CCCCCCCccc-CCCCCccEEEeccCCCceEEEEEeC
Confidence 0 0022222222 3566 66667664 6889999998
Q ss_pred C-------ceEEEEeeCCCCCeeEEEEecCCCCEEEEEe-------CCCcEEEEEeecceEE-Eee--------ccCCCC
Q 001319 834 T-------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-------EDSTIHIYNVRVDEVK-SKL--------KGHQKR 890 (1101)
Q Consensus 834 ~-------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-------~dg~v~iwd~~~~~~~-~~~--------~~h~~~ 890 (1101)
+ ++++.++.+|...+..++|+| ++++|++++ .+++|.|||+.+++.. ..+ ..+...
T Consensus 402 ~~~~~~~~~~~v~~l~~~g~~~~~v~~~p-dg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~v~~~~~~~~~~~~ 480 (543)
T 1nir_A 402 PKNHPQYAWKKVAELQGQGGGSLFIKTHP-KSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKR 480 (543)
T ss_dssp TTTCTTTBTSEEEEEECSCSCCCCEECCT-TCCEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCE
T ss_pred CCCCchhcCeEEEEEEcCCCCceEEEcCC-CCCcEEEecCCCCCcccCceEEEEECCCCCCCeEEeechhhcccCCCCCc
Confidence 8 899999999998999999999 999999987 2779999999988766 443 456788
Q ss_pred eeEEEEcCCCCEEEEEe-----CCCcEEEEECCCCccccc
Q 001319 891 ITGLAFSTSLNILVSSG-----ADAQLCVWSIDTWEKRKS 925 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s-----~Dg~v~lwd~~~~~~~~~ 925 (1101)
+..++|+|||++|+++. .|+.|.|||..+++++..
T Consensus 481 ~~~~~~~~~g~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~ 520 (543)
T 1nir_A 481 VVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAV 520 (543)
T ss_dssp EEEEEECSSSSEEEEEEECCTTSCCEEEEEETTTTEEEEE
T ss_pred eEeccCCCCCCEEEEEeecCCCCCCeEEEEECCCceEEEe
Confidence 99999999999888763 479999999999886543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=246.25 Aligned_cols=283 Identities=9% Similarity=0.035 Sum_probs=219.1
Q ss_pred CcEEEEEEecCCceEEEEEe----ccC----cEEEEec--CCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGS----SNG----EITLWEL--AMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~----~d~----~i~iwd~--~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
..|...+|++.|..++++|+ .|| .|+|||+ .+++.+.. ..+.+|...+..+++
T Consensus 63 ~~~~~~~w~~~g~~~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~ 125 (415)
T 2hqs_A 63 QEVQPAAWSALGIDAVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQ-----------------NSYKVNKQWLRYAGH 125 (415)
T ss_dssp GGCCHHHHHTTTCCEEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEE-----------------EEEEECGGGHHHHHH
T ss_pred cCcCHHHHHhcCCCEEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEee-----------------eEEEcChhHHHHHHH
Confidence 57888889999987888886 457 8999999 88876532 125667777777777
Q ss_pred cc--------------CCCEEEEEECC------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 415 SP--------------DGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 415 sp--------------dg~~las~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
++ .+..++.++.+ +.|++||++++. .+ .+.+|...|.+++|+|||+ .|++++.|
T Consensus 126 ~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~-~~---~l~~~~~~v~~~~~Spdg~--~la~~s~~ 199 (415)
T 2hqs_A 126 TASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYN-QF---VVHRSPQPLMSPAWSPDGS--KLAYVTFE 199 (415)
T ss_dssp HHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCS-CE---EEEEESSCEEEEEECTTSS--EEEEEECT
T ss_pred HHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCC-CE---EEeCCCCcceeeEEcCCCC--EEEEEEec
Confidence 75 26677776654 799999998543 33 5778999999999999999 78888877
Q ss_pred c---eEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEE-EeccCCe--EEEEecCCCCeeeeccCCCCceEEEEEc
Q 001319 475 K---LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYS 547 (1101)
Q Consensus 475 ~---~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s 547 (1101)
+ .|++|| .+++. ..+..|.+.+.+++|+| ||+.|+ +++.++. |++||+.+++. ..+..+...+.+++|+
T Consensus 200 ~~~~~i~~~d~~tg~~-~~l~~~~~~~~~~~~sp--dg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~s 275 (415)
T 2hqs_A 200 SGRSALVIQTLANGAV-RQVASFPRHNGAPAFSP--DGSKLAFALSKTGSLNLYVMDLASGQI-RQVTDGRSNNTEPTWF 275 (415)
T ss_dssp TSSCEEEEEETTTCCE-EEEECCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTTCCE-EECCCCSSCEEEEEEC
T ss_pred CCCcEEEEEECCCCcE-EEeecCCCcccCEEEcC--CCCEEEEEEecCCCceEEEEECCCCCE-EeCcCCCCcccceEEC
Confidence 5 999999 66665 46778888999999988 567666 6666654 99999988665 4566677789999999
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC---CcEEEEECCCCeeeEeec
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~ 624 (1101)
|||++|++++. .++...|++||+.+++.. .+..+.. .+..++|+|+|++|++++.+ ..|++||+.+++... +.
T Consensus 276 pdg~~l~~~s~-~~g~~~i~~~d~~~~~~~-~l~~~~~-~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~-l~ 351 (415)
T 2hqs_A 276 PDSQNLAFTSD-QAGRPQVYKVNINGGAPQ-RITWEGS-QNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQV-LS 351 (415)
T ss_dssp TTSSEEEEEEC-TTSSCEEEEEETTSSCCE-ECCCSSS-EEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEE-CC
T ss_pred CCCCEEEEEEC-CCCCcEEEEEECCCCCEE-EEecCCC-cccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEE-ec
Confidence 99999998873 223447899999888753 3333333 67789999999999988754 589999999887643 33
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcCC---cEEEEEcccc
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTADN---GFKILANAIG 661 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d~---~i~iwd~~~~ 661 (1101)
.+ . .+.+++|+|+|++|++++.++ .|++||+..+
T Consensus 352 ~~--~-~~~~~~~spdg~~l~~~s~~~~~~~l~~~d~~g~ 388 (415)
T 2hqs_A 352 ST--F-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGR 388 (415)
T ss_dssp CS--S-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSC
T ss_pred CC--C-CcCCeEEcCCCCEEEEEEcCCCccEEEEEECCCC
Confidence 22 2 688999999999999988876 7999998643
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-23 Score=259.19 Aligned_cols=303 Identities=11% Similarity=0.059 Sum_probs=211.1
Q ss_pred CCcEEEEEEecCCceEEEEEec-cC-----cEEEEecCCCceeccccceeecc-----cccCccccccccccCCccEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSS-NG-----EITLWELAMRDRLVSKPFKIWDM-----AACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~-d~-----~i~iwd~~~~~~~~~~~~~~~d~-----~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
...|.+++|||||++| ++++. |+ .|.+||+.+++............ .......+...-......|.++
T Consensus 36 ~~~~~~~~~SpdG~~l-a~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 114 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRV-TFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDY 114 (741)
T ss_dssp CCCCEEEEECTTSSEE-EEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCC
T ss_pred CCCCCCceEecCCCEE-EEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCccee
Confidence 4579999999999965 66666 87 89999999887543211000000 0000000000000001358899
Q ss_pred EEccCCCEEEEEECCCeEEEEeecCCc--ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 413 AWSPDGNYVGVAFTKHLIQLYSYAGSN--DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 413 ~~spdg~~las~~~d~~i~vwd~~~~~--~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
+|||||++|++++. +.|++||+.++. ... .+..|...+.+++|+|||+ .|+.++ ++.|++|| .+++....
T Consensus 115 ~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~---~l~~~~~~~~~~~~SPDG~--~la~~~-~~~i~~~d~~~g~~~~~ 187 (741)
T 2ecf_A 115 QWSPDAQRLLFPLG-GELYLYDLKQEGKAAVR---QLTHGEGFATDAKLSPKGG--FVSFIR-GRNLWVIDLASGRQMQL 187 (741)
T ss_dssp EECTTSSEEEEEET-TEEEEEESSSCSTTSCC---BCCCSSSCEEEEEECTTSS--EEEEEE-TTEEEEEETTTTEEEEC
T ss_pred EECCCCCEEEEEeC-CcEEEEECCCCCcceEE---EcccCCcccccccCCCCCC--EEEEEe-CCcEEEEecCCCCEEEe
Confidence 99999999999987 899999999882 233 4667888999999999999 677766 56999999 55555444
Q ss_pred eecCCcC----------------eEEEecccCCCccEEEEeccCC---------------------------------eE
Q 001319 490 FEGHEAP----------------VYSICPHHKENIQFIFSTAIDG---------------------------------KI 520 (1101)
Q Consensus 490 ~~~h~~~----------------v~~v~~~~~~~~~~l~s~~~d~---------------------------------~i 520 (1101)
...+... +..++|+| ||++|++++.|+ .|
T Consensus 188 ~~~~~~~~~~g~~~~v~~~~~~~~~~~~~Sp--Dg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l 265 (741)
T 2ecf_A 188 TADGSTTIGNGIAEFVADEEMDRHTGYWWAP--DDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKL 265 (741)
T ss_dssp CCCCCSSEEESCCCHHHHHHSCCCCSEEECT--TSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEE
T ss_pred ccCCccceeccccceeeeeccccccceEECC--CCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEE
Confidence 4434332 36788877 678888887765 78
Q ss_pred EEEecCC-CCeeeecc--CCCCceEEEEEccCCCEEEEeec-CCCCCceEEEEeCCCCeeEEEecccCCc---ceEEEEE
Q 001319 521 KAWLYDT-MGSRVDYD--APGHWCTTMLYSADGSRLFSCGT-SKDGDSFLVEWNESEGTIKRTYAGFRKK---SNGVVQF 593 (1101)
Q Consensus 521 ~~wd~~~-~~~~~~~~--~~~~~v~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~~~---~v~~~~~ 593 (1101)
.+||+.+ ++...... .+...+..++| |||++|++++. ....+..|++||+.+++....+..+... .+..++|
T Consensus 266 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~ 344 (741)
T 2ecf_A 266 GVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRF 344 (741)
T ss_dssp EEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEE
T ss_pred EEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEE
Confidence 8999887 66554332 35567899999 99999997764 2234678999999999888777665432 2356899
Q ss_pred eCCCCEEEEEeCCCcEEEEECC-CCeeeEeeccCCCCCCCCee-EEecCCCEEEEEEc-CC--cEEEEEccc
Q 001319 594 DTTQNHFLAVGEDSQIKFWDMD-NVNILTSTDAEGGLPNLPRL-RFSKEGNLLAVTTA-DN--GFKILANAI 660 (1101)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~-~~~~~~~~~~~~~~~~v~~v-~~s~~g~~l~~~~~-d~--~i~iwd~~~ 660 (1101)
+|||+.+++++.||.+.+|.+. .+. ...+..+ ...+..+ .|+|+|+.|+..+. ++ .+++|++..
T Consensus 345 spdg~~~~~~~~~g~~~l~~~~~~~~-~~~l~~~--~~~v~~~~~~s~dg~~l~~~~~~~~~~~~~l~~~~~ 413 (741)
T 2ecf_A 345 LDDGSILWSSERTGFQHLYRIDSKGK-AAALTHG--NWSVDELLAVDEKAGLAYFRAGIESARESQIYAVPL 413 (741)
T ss_dssp CTTSCEEEEECTTSSCEEEEECSSSC-EEESCCS--SSCEEEEEEEETTTTEEEEEECSSCTTCBEEEEEET
T ss_pred CCCCeEEEEecCCCccEEEEEcCCCC-eeeeeec--ceEEEeEeEEeCCCCEEEEEEeCCCCceEEEEEEEc
Confidence 9999988888899988888765 344 5555433 3356666 59999998765544 44 889998764
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.92 E-value=3.1e-23 Score=257.06 Aligned_cols=244 Identities=10% Similarity=0.013 Sum_probs=184.8
Q ss_pred CccEEEEEEccCCCEEEEEEC-CC-----eEEEEeecCCcccccceeeeccc------------------------CcEE
Q 001319 406 PISVSRVAWSPDGNYVGVAFT-KH-----LIQLYSYAGSNDLRQHSQIDAHV------------------------GAVN 455 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~-d~-----~i~vwd~~~~~~~~~~~~l~~h~------------------------~~V~ 455 (1101)
...|.+++|||||++||+++. |+ .|++||+.+++... .+..+. ..|.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 112 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRL---LVDSKVVLPGTETLSDEEKARRERQRIAAMTGIV 112 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEE---EECGGGTC--------------------CCEESC
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeE---ccchhhcccccccccchhhhhhhhhhhccccCcc
Confidence 457999999999999999998 88 89999999987544 233332 2388
Q ss_pred EEEEecCCCceEEEEecCCceEEEEE-cCCc--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee
Q 001319 456 DLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV 532 (1101)
Q Consensus 456 ~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~ 532 (1101)
+++|+|||+ +|++++. +.|++|| .++. .+..+..|...+..++|+| ||++|++++ ++.|++||+.+++...
T Consensus 113 ~~~~SpDg~--~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SP--DG~~la~~~-~~~i~~~d~~~g~~~~ 186 (741)
T 2ecf_A 113 DYQWSPDAQ--RLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSP--KGGFVSFIR-GRNLWVIDLASGRQMQ 186 (741)
T ss_dssp CCEECTTSS--EEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECT--TSSEEEEEE-TTEEEEEETTTTEEEE
T ss_pred eeEECCCCC--EEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCC--CCCEEEEEe-CCcEEEEecCCCCEEE
Confidence 999999999 6777765 9999999 4442 5667788888999999987 678888877 5699999998876654
Q ss_pred eccCCCCc----------------eEEEEEccCCCEEEEeecCCC-----------------------------CCceEE
Q 001319 533 DYDAPGHW----------------CTTMLYSADGSRLFSCGTSKD-----------------------------GDSFLV 567 (1101)
Q Consensus 533 ~~~~~~~~----------------v~~~~~s~d~~~l~~~~~~~~-----------------------------~~~~i~ 567 (1101)
....+... +.+++|||||++|++++.+.. ....|+
T Consensus 187 ~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~ 266 (741)
T 2ecf_A 187 LTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLG 266 (741)
T ss_dssp CCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEE
T ss_pred eccCCccceeccccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEE
Confidence 44333322 478999999999998865221 112788
Q ss_pred EEeCCC-CeeEEEecc-cCCcceEEEEEeCCCCEEEEEeC-----CCcEEEEECCCCeeeEeeccCCC--CCCCCeeEEe
Q 001319 568 EWNESE-GTIKRTYAG-FRKKSNGVVQFDTTQNHFLAVGE-----DSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFS 638 (1101)
Q Consensus 568 iwd~~~-~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~-----dg~i~iwd~~~~~~~~~~~~~~~--~~~v~~v~~s 638 (1101)
+||+.+ ++......+ .....+..++| |||++|++++. +..|++||+.+++....+..+.. ...+..++|+
T Consensus 267 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~s 345 (741)
T 2ecf_A 267 VISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFL 345 (741)
T ss_dssp EECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEEC
T ss_pred EEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEEC
Confidence 999998 876655433 22336788999 99999998653 57899999999887766654321 1135689999
Q ss_pred cCCCEEEEEEcCCcEEEEEcc
Q 001319 639 KEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
|||+++++++.++.+++|...
T Consensus 346 pdg~~~~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 346 DDGSILWSSERTGFQHLYRID 366 (741)
T ss_dssp TTSCEEEEECTTSSCEEEEEC
T ss_pred CCCeEEEEecCCCccEEEEEc
Confidence 999988888888888888654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.91 E-value=1.2e-23 Score=260.23 Aligned_cols=287 Identities=10% Similarity=0.104 Sum_probs=209.3
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCc---cEEEEEEccCCCEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVG 422 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~v~~~~~spdg~~la 422 (1101)
.+.+++|||||+ ++++ +.||.|++||+.+++... ++.+|.. .|.+++|||||++||
T Consensus 18 ~~~~~~~spdg~-~~~~-~~dg~i~~~d~~~g~~~~-------------------~~~~~~~~~~~v~~~~~SpDg~~l~ 76 (723)
T 1xfd_A 18 HDPEAKWISDTE-FIYR-EQKGTVRLWNVETNTSTV-------------------LIEGKKIESLRAIRYEISPDREYAL 76 (723)
T ss_dssp CCCCCCBSSSSC-BCCC-CSSSCEEEBCGGGCCCEE-------------------EECTTTTTTTTCSEEEECTTSSEEE
T ss_pred cccccEEcCCCc-EEEE-eCCCCEEEEECCCCcEEE-------------------EeccccccccccceEEECCCCCEEE
Confidence 467899999999 4455 689999999999987643 2444543 499999999999999
Q ss_pred EEECC---------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeec
Q 001319 423 VAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1101)
Q Consensus 423 s~~~d---------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~ 492 (1101)
+++.+ +.|.+||+.+++. +.+....+|...+..++|||||+ .|+.++. +.|++|| .+++.......
T Consensus 77 ~~~~~~~~~~~~~~~~i~~~d~~~~~~-~~l~~~~~~~~~~~~~~~SPdG~--~la~~~~-~~i~~~~~~~g~~~~~~~~ 152 (723)
T 1xfd_A 77 FSYNVEPIYQHSYTGYYVLSKIPHGDP-QSLDPPEVSNAKLQYAGWGPKGQ--QLIFIFE-NNIYYCAHVGKQAIRVVST 152 (723)
T ss_dssp EEESCCCCSSSCCCSEEEEEESSSCCC-EECCCTTCCSCCCSBCCBCSSTT--CEEEEET-TEEEEESSSSSCCEEEECC
T ss_pred EEecCccceeecceeeEEEEECCCCce-EeccCCccccccccccEECCCCC--EEEEEEC-CeEEEEECCCCceEEEecC
Confidence 99874 7888999999875 32223345666699999999999 5776664 7999999 66766655554
Q ss_pred CCcCe------------------EEEecccCCCccEEEEeccCC----------------------------------eE
Q 001319 493 HEAPV------------------YSICPHHKENIQFIFSTAIDG----------------------------------KI 520 (1101)
Q Consensus 493 h~~~v------------------~~v~~~~~~~~~~l~s~~~d~----------------------------------~i 520 (1101)
+...+ .+++|+| ||+.|++++.|+ .|
T Consensus 153 ~~~~~~~~g~~~~v~~ee~~~~~~~~~~Sp--Dg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l 230 (723)
T 1xfd_A 153 GKEGVIYNGLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISL 230 (723)
T ss_dssp CBTTTEEEEECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEE
T ss_pred CCCCceECcccceeEEEEeccCcceEEECC--CCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEE
Confidence 44333 7889977 678888887653 79
Q ss_pred EEEecCCCCeeeeccCC------CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcce----EE
Q 001319 521 KAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSN----GV 590 (1101)
Q Consensus 521 ~~wd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v----~~ 590 (1101)
++||+.+++....+..+ ...+..++|||||+++++.......+..|++||+.+++....+..+....+ ..
T Consensus 231 ~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~ 310 (723)
T 1xfd_A 231 HVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEE 310 (723)
T ss_dssp EEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCC
T ss_pred EEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCC
Confidence 99999888755555543 457899999999999877765444567899999999988776654433233 36
Q ss_pred EEEeCCCCEEEEE--eCCC------cEEEEE-CCCCee--eEeeccCCCCCCCCe-eEEecCCCEEEEEEcC---CcEEE
Q 001319 591 VQFDTTQNHFLAV--GEDS------QIKFWD-MDNVNI--LTSTDAEGGLPNLPR-LRFSKEGNLLAVTTAD---NGFKI 655 (1101)
Q Consensus 591 ~~~~~~~~~l~~~--~~dg------~i~iwd-~~~~~~--~~~~~~~~~~~~v~~-v~~s~~g~~l~~~~~d---~~i~i 655 (1101)
++|+|||+.|+.. ..++ .|++|| ..++.. ...+... ...+.. ++|+|||+.|+..+.+ +.+++
T Consensus 311 ~~~spdg~~l~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~--~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l 388 (723)
T 1xfd_A 311 PVFSKDGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSG--DWDVTKILAYDEKGNKIYFLSTEDLPRRRQL 388 (723)
T ss_dssp CEECTTSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCS--SSCEEEEEEEETTTTEEEEEESSSCTTCCEE
T ss_pred ceEcCCCCeEEEEEecccCCCcceeEEEEEeccCCCCccceeEeecC--CeEEEeeeEEcCCCCEEEEEEcCCCCcceEE
Confidence 8999999987764 4666 577777 444441 3333321 113443 6899999999877665 78999
Q ss_pred EEcccc
Q 001319 656 LANAIG 661 (1101)
Q Consensus 656 wd~~~~ 661 (1101)
|++...
T Consensus 389 ~~~~~~ 394 (723)
T 1xfd_A 389 YSANTV 394 (723)
T ss_dssp EEECSS
T ss_pred EEEeCC
Confidence 998643
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5.5e-23 Score=233.69 Aligned_cols=280 Identities=10% Similarity=0.041 Sum_probs=209.5
Q ss_pred cccc--CCCCcceeE-eecCCCcEEEEEEecC--------------CceEEEEEec--c---CcEEEEecCCCceecccc
Q 001319 327 TWSL--DDLPRTVAV-SLHQGSTVISMDFHPS--------------HQTLLLVGSS--N---GEITLWELAMRDRLVSKP 384 (1101)
Q Consensus 327 ~~~~--~~~~~~~~~-~~~h~~~V~~v~fspd--------------g~~llasg~~--d---~~i~iwd~~~~~~~~~~~ 384 (1101)
+|++ ......... ..+|...+..+++++. +.+++.++.. + +.|++||++.+.. .
T Consensus 97 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~~~~~~i~i~d~~g~~~-~--- 172 (415)
T 2hqs_A 97 LVDTGGAPGTVLAQNSYKVNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGGQFPYELRVSDYDGYNQ-F--- 172 (415)
T ss_dssp EEECSSSTTCEEEEEEEEECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSSSCCEEEEEEETTSCSC-E---
T ss_pred EEeCCCCCCCEEeeeEEEcChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCCCccceEEEEcCCCCCC-E---
Confidence 7777 443322223 3458888999988861 4445444332 2 7999999975432 2
Q ss_pred ceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCC---eEEEEeecCCcccccceeeecccCcEEEEEEec
Q 001319 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461 (1101)
Q Consensus 385 ~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~ 461 (1101)
.+.+|...|.+++|||||++||+++.++ .|++||+.+++.. .+..|.+.+.+++|+|
T Consensus 173 ----------------~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~----~l~~~~~~~~~~~~sp 232 (415)
T 2hqs_A 173 ----------------VVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSP 232 (415)
T ss_dssp ----------------EEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECT
T ss_pred ----------------EEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEE----EeecCCCcccCEEEcC
Confidence 2667899999999999999999999875 9999999998754 3667888999999999
Q ss_pred CCCceEEEEecCCce--EEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CC--eEEEEecCCCCeeeeccC
Q 001319 462 PNKLLCVVTCGDDKL--IKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DG--KIKAWLYDTMGSRVDYDA 536 (1101)
Q Consensus 462 d~~~~~l~s~~~d~~--v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~--~i~~wd~~~~~~~~~~~~ 536 (1101)
||+. ++++++.|+. |++||..+.....+..|...+.+++|+| ||+.|++++. ++ .|.+||+.++.. ..+..
T Consensus 233 dg~~-la~~~~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~sp--dg~~l~~~s~~~g~~~i~~~d~~~~~~-~~l~~ 308 (415)
T 2hqs_A 233 DGSK-LAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFP--DSQNLAFTSDQAGRPQVYKVNINGGAP-QRITW 308 (415)
T ss_dssp TSSE-EEEEECTTSSCEEEEEETTTCCEEECCCCSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCC-EECCC
T ss_pred CCCE-EEEEEecCCCceEEEEECCCCCEEeCcCCCCcccceEECC--CCCEEEEEECCCCCcEEEEEECCCCCE-EEEec
Confidence 9994 3336766654 9999943344577888999999999987 6678887775 45 677778877653 34455
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC---cEEEEE
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS---QIKFWD 613 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg---~i~iwd 613 (1101)
+...+.+++|+|||++|++++.+ +++..|++||+.+++.. .+..+. .+..++|+|+|++|++++.++ .|++||
T Consensus 309 ~~~~~~~~~~spdG~~l~~~~~~-~g~~~i~~~d~~~~~~~-~l~~~~--~~~~~~~spdg~~l~~~s~~~~~~~l~~~d 384 (415)
T 2hqs_A 309 EGSQNQDADVSSDGKFMVMVSSN-GGQQHIAKQDLATGGVQ-VLSSTF--LDETPSLAPNGTMVIYSSSQGMGSVLNLVS 384 (415)
T ss_dssp SSSEEEEEEECTTSSEEEEEEEC-SSCEEEEEEETTTCCEE-ECCCSS--SCEEEEECTTSSEEEEEEEETTEEEEEEEE
T ss_pred CCCcccCeEECCCCCEEEEEECc-CCceEEEEEECCCCCEE-EecCCC--CcCCeEEcCCCCEEEEEEcCCCccEEEEEE
Confidence 66788999999999999988752 23578999999998874 444442 688899999999999988776 799999
Q ss_pred CCCCeeeEeeccCCCCCCCCeeEEecCC
Q 001319 614 MDNVNILTSTDAEGGLPNLPRLRFSKEG 641 (1101)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g 641 (1101)
+.. .....+..+ ...|.+++|+|.-
T Consensus 385 ~~g-~~~~~l~~~--~~~v~~~~~~~~~ 409 (415)
T 2hqs_A 385 TDG-RFKARLPAT--DGQVKFPAWSPYL 409 (415)
T ss_dssp TTS-CCEEECCCS--SSEEEEEEECCCC
T ss_pred CCC-CcEEEeeCC--CCCCcCCcccccc
Confidence 874 445555544 3479999999964
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.91 E-value=8.9e-22 Score=217.77 Aligned_cols=279 Identities=10% Similarity=0.053 Sum_probs=204.9
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC-CC
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-KH 428 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~-d~ 428 (1101)
..|.+++++++++++.++.|.+||..+++.+.. +..+...+ +++|+|||++|++++. ++
T Consensus 3 ~~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~-------------------~~~~~~~~-~~~~s~dg~~l~~~~~~~~ 62 (331)
T 3u4y_A 3 AMFQTTSNFGIVVEQHLRRISFFSTDTLEILNQ-------------------ITLGYDFV-DTAITSDCSNVVVTSDFCQ 62 (331)
T ss_dssp ----CCCCEEEEEEGGGTEEEEEETTTCCEEEE-------------------EECCCCEE-EEEECSSSCEEEEEESTTC
T ss_pred eeEcCCCCEEEEEecCCCeEEEEeCcccceeee-------------------EEccCCcc-eEEEcCCCCEEEEEeCCCC
Confidence 356777777889999999999999999887542 22344556 9999999998777766 88
Q ss_pred eEEEEeecCCcc-cccceeeecccCcEEEEEEecCCCceEEEEecCC-c--eEEEEE-cCCceeEEeecCCcCeEEEecc
Q 001319 429 LIQLYSYAGSND-LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-K--LIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 429 ~i~vwd~~~~~~-~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-~--~v~iwd-~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
.|.+||+.+++. .. .+..+..+..+++|+|||+ +++++..+ + .|.+|| .+++.+..+..+ ....+++|+
T Consensus 63 ~i~~~d~~~~~~~~~---~~~~~~~~~~~~~~s~dg~--~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~-~~~~~~~~s 136 (331)
T 3u4y_A 63 TLVQIETQLEPPKVV---AIQEGQSSMADVDITPDDQ--FAVTVTGLNHPFNMQSYSFLKNKFISTIPIP-YDAVGIAIS 136 (331)
T ss_dssp EEEEEECSSSSCEEE---EEEECSSCCCCEEECTTSS--EEEECCCSSSSCEEEEEETTTTEEEEEEECC-TTEEEEEEC
T ss_pred eEEEEECCCCceeEE---ecccCCCCccceEECCCCC--EEEEecCCCCcccEEEEECCCCCeEEEEECC-CCccceEEC
Confidence 999999999876 33 4556666666699999999 56655555 3 899999 778877777654 456899998
Q ss_pred cCCCccEE-EEeccCCe-EEEEecCCCCeee----eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee-
Q 001319 504 HKENIQFI-FSTAIDGK-IKAWLYDTMGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI- 576 (1101)
Q Consensus 504 ~~~~~~~l-~s~~~d~~-i~~wd~~~~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~- 576 (1101)
| +|+++ ++...++. |.+|+++...... ........+..++|+|+|++++++.. .++.|.+||+.+++.
T Consensus 137 p--dg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~---~~~~v~v~d~~~~~~~ 211 (331)
T 3u4y_A 137 P--NGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVANL---IGNSIGILETQNPENI 211 (331)
T ss_dssp T--TSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEEET---TTTEEEEEECSSTTSC
T ss_pred C--CCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEEeC---CCCeEEEEECCCCccc
Confidence 7 55544 44455578 9999988654432 22233456899999999998776653 478899999999888
Q ss_pred --EEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCee--eEeeccC----CC-CCCCCeeEEecCCCEEEE
Q 001319 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNI--LTSTDAE----GG-LPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 577 --~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~--~~~~~~~----~~-~~~v~~v~~s~~g~~l~~ 646 (1101)
+..+... ..+..++|+|+|++++++. .++.|.+||..+++. +..+... .. ......++|+|+|++|++
T Consensus 212 ~~~~~~~~~--~~~~~~~~spdg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v 289 (331)
T 3u4y_A 212 TLLNAVGTN--NLPGTIVVSRDGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPRPLFGANQMALNKTETKLFI 289 (331)
T ss_dssp EEEEEEECS--SCCCCEEECTTSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCGGGTTCCCEEECTTSSEEEE
T ss_pred ceeeeccCC--CCCceEEECCCCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCCCCcccccceEECCCCCEEEE
Confidence 7777654 2567799999999887765 578899999999887 3333222 11 111245899999998877
Q ss_pred EEc-CCcEEEEEcccc
Q 001319 647 TTA-DNGFKILANAIG 661 (1101)
Q Consensus 647 ~~~-d~~i~iwd~~~~ 661 (1101)
++. ++.|.+||+...
T Consensus 290 ~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 290 SANISRELKVFTISGK 305 (331)
T ss_dssp EETTTTEEEEEETTSC
T ss_pred ecCCCCcEEEEEecCC
Confidence 665 569999998765
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=7.9e-22 Score=242.81 Aligned_cols=237 Identities=10% Similarity=-0.010 Sum_probs=167.0
Q ss_pred EEEEEEccCCCEEEEEECCCeEEEEeecCCccc-ccceeeeccc-----------------CcEEEEEEecCCCceEEEE
Q 001319 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDL-RQHSQIDAHV-----------------GAVNDLAFAYPNKLLCVVT 470 (1101)
Q Consensus 409 v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~-~~~~~l~~h~-----------------~~V~~l~~s~d~~~~~l~s 470 (1101)
+..+.|+ |+.+++++.|+ | +||+.+++.+ .. +..|. ..|.+++|+|| +. ++++
T Consensus 28 ~~~~~w~--g~~~~~~~~~~-i-~~d~~tg~~~~~~---l~~~~~~~~~l~~~~~~~~~~~~~v~~~~~spd-~~-~~~~ 98 (706)
T 2z3z_A 28 VVGLQWM--GDNYVFIEGDD-L-VFNKANGKSAQTT---RFSAADLNALMPEGCKFQTTDAFPSFRTLDAGR-GL-VVLF 98 (706)
T ss_dssp CTTCEEE--TTEEEEEETTE-E-EEEC-------CE---EEEHHHHHTTC-----------CCCEEEEETTT-TE-EEEE
T ss_pred CCCCcCc--CCeEEEEeCCc-E-EEECCCCcEeeEE---eechhHhhhhccchhccccccccCceeEEECCC-Ce-EEEE
Confidence 4557788 66777777888 8 9999999863 32 22332 56999999999 52 3444
Q ss_pred ecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCC-----CCeeeeccCCCCc-----
Q 001319 471 CGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRVDYDAPGHW----- 540 (1101)
Q Consensus 471 ~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~~~~~~~~~----- 540 (1101)
. ++.|++||..+.....+..+...+.+++|+| ||+.|+++ .++.|++||+.+ ++.......+...
T Consensus 99 -~-~~~i~~~d~~~~~~~~l~~~~~~~~~~~~Sp--dG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~ 173 (706)
T 2z3z_A 99 -T-QGGLVGFDMLARKVTYLFDTNEETASLDFSP--VGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQ 173 (706)
T ss_dssp -E-TTEEEEEETTTTEEEEEECCTTCCTTCEECT--TSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESS
T ss_pred -E-CCEEEEEECCCCceEEccCCcccccCCcCCC--CCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEccc
Confidence 3 5999999944444555666777888999987 66788874 689999999988 6655433333332
Q ss_pred ---------eEEEEEccCCCEEEEeecC-----------------------------CCCCceEEEEeCCCCeeEEEecc
Q 001319 541 ---------CTTMLYSADGSRLFSCGTS-----------------------------KDGDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 541 ---------v~~~~~s~d~~~l~~~~~~-----------------------------~~~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
+.+++|||||++|++++.+ ...+..|++||+.+++......+
T Consensus 174 ~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~ 253 (706)
T 2z3z_A 174 AVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTG 253 (706)
T ss_dssp CCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCC
T ss_pred chhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccC
Confidence 4789999999999988631 11357899999999887655433
Q ss_pred -cCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEECCCC-eeeEeeccC--CCCCCCCeeEEec--CCCEEEEEEcCC
Q 001319 583 -FRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNV-NILTSTDAE--GGLPNLPRLRFSK--EGNLLAVTTADN 651 (1101)
Q Consensus 583 -~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~-~~~~~~~~~--~~~~~v~~v~~s~--~g~~l~~~~~d~ 651 (1101)
.....+..++|+|||++|++++.++ .|++||+.++ ......... .....+..++|+| ||++++++..++
T Consensus 254 ~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g 333 (706)
T 2z3z_A 254 EPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDG 333 (706)
T ss_dssp SCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTS
T ss_pred CCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCC
Confidence 2233678899999999999987665 8999999998 433322211 1111346789999 999999888888
Q ss_pred cEEEEEcc
Q 001319 652 GFKILANA 659 (1101)
Q Consensus 652 ~i~iwd~~ 659 (1101)
.+++|.+.
T Consensus 334 ~~~l~~~~ 341 (706)
T 2z3z_A 334 WNHLYLYD 341 (706)
T ss_dssp SCEEEEEE
T ss_pred ccEEEEEE
Confidence 88888764
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.2e-21 Score=216.91 Aligned_cols=276 Identities=11% Similarity=0.091 Sum_probs=214.1
Q ss_pred cCCCcEEEEEEecCCceEEEEEec------cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSS------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
.....+..++|+|+|++++++... ++.|.+||..+++.+.. +. ....+..++|+
T Consensus 38 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~-------------------~~-~~~~~~~~~~s 97 (353)
T 3vgz_A 38 AVGKGAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQA-------------------IH-NDLKPFGATIN 97 (353)
T ss_dssp EEESSEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEE-------------------EE-ESSCCCSEEEE
T ss_pred hhccCccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEE-------------------Ee-cCCCcceEEEC
Confidence 345678999999999977555433 67899999998876542 11 23357789999
Q ss_pred cCCCEEEEEE-CCCeEEEEeecCCcccccceeeecccC---------cEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 416 PDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVG---------AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 416 pdg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~---------~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
|||+++++++ .++.|.+||..+++.+. .+..+.. .+.+++|+|+|+.+++...+.++.|.+|| .++
T Consensus 98 ~dg~~l~v~~~~~~~v~~~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~ 174 (353)
T 3vgz_A 98 NTTQTLWFGNTVNSAVTAIDAKTGEVKG---RLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI 174 (353)
T ss_dssp TTTTEEEEEETTTTEEEEEETTTCCEEE---EEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT
T ss_pred CCCCEEEEEecCCCEEEEEeCCCCeeEE---EEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC
Confidence 9999766654 57899999999988665 3333322 27899999999952222224688999999 788
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC----CCCceEEEEEccCCCEEEEeecCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+.+..+..+...+.+++|++ +++++++++.++.|.+||..+++....+.. +...+..++|+|+|++++++..
T Consensus 175 ~~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~-- 250 (353)
T 3vgz_A 175 KLKTAIQNTGKMSTGLALDS--EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS-- 250 (353)
T ss_dssp EEEEEECCCCTTCCCCEEET--TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES--
T ss_pred ceEEEecCCCCccceEEECC--CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC--
Confidence 88888875666688888877 667899999999999999998887765554 3446788999999998887764
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
.++.|.+||..+++.+..+..... ..++|+|+++++++++ .++.|.+||..+++.+..+.... .+.+++|+|
T Consensus 251 -~~~~v~~~d~~~~~~~~~~~~~~~---~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~ 323 (353)
T 3vgz_A 251 -KAAEVLVVDTRNGNILAKVAAPES---LAVLFNPARNEAYVTHRQAGKVSVIDAKSYKVVKTFDTPT---HPNSLALSA 323 (353)
T ss_dssp -SSSEEEEEETTTCCEEEEEECSSC---CCEEEETTTTEEEEEETTTTEEEEEETTTTEEEEEEECCS---EEEEEEECT
T ss_pred -CCCEEEEEECCCCcEEEEEEcCCC---ceEEECCCCCEEEEEECCCCeEEEEECCCCeEEEEEecCC---CCCeEEEcC
Confidence 368999999999998888775432 4589999999777665 78999999999999888876543 468999999
Q ss_pred CCCEEEEEEcCC
Q 001319 640 EGNLLAVTTADN 651 (1101)
Q Consensus 640 ~g~~l~~~~~d~ 651 (1101)
+|++|+++..++
T Consensus 324 dg~~l~v~~~~~ 335 (353)
T 3vgz_A 324 DGKTLYVSVKQK 335 (353)
T ss_dssp TSCEEEEEEECC
T ss_pred CCCEEEEEEccc
Confidence 999888777654
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-22 Score=247.79 Aligned_cols=385 Identities=10% Similarity=0.060 Sum_probs=251.9
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCc--ceEEEEEeCCCCEEEEEeCC---------Cc
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK--SNGVVQFDTTQNHFLAVGED---------SQ 608 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~--~v~~~~~~~~~~~l~~~~~d---------g~ 608 (1101)
.+.+++|+|||+++++ + .++.|++||..+++....+.++... .+..++|+|||++|++++.+ +.
T Consensus 18 ~~~~~~~spdg~~~~~-~----~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~ 92 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-E----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGY 92 (723)
T ss_dssp CCCCCCBSSSSCBCCC-C----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSE
T ss_pred cccccEEcCCCcEEEE-e----CCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceee
Confidence 3668899999997765 3 2779999999999988888766532 38889999999999998764 78
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeec
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVS 688 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 688 (1101)
+++||+.+++.........+...+..++|||||+.|+.++. +.|++|++.++. ..+........
T Consensus 93 i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~-~~~~~~~~~~~-------------- 156 (723)
T 1xfd_A 93 YVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQ-AIRVVSTGKEG-------------- 156 (723)
T ss_dssp EEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSC-CEEEECCCBTT--------------
T ss_pred EEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCc-eEEEecCCCCC--------------
Confidence 89999998876322222223334889999999999999886 799999988762 21111110000
Q ss_pred cccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecC-CeEEEEEec
Q 001319 689 ASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKWH 767 (1101)
Q Consensus 689 ~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~v~~w~~~ 767 (1101)
.+ .....+. + .. ..-...+..++|+|||+.|+.++.+ +.+.+|++.
T Consensus 157 --~~-----------------------~~g~~~~-----v-~~--ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~ 203 (723)
T 1xfd_A 157 --VI-----------------------YNGLSDW-----L-YE--EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELP 203 (723)
T ss_dssp --TE-----------------------EEEECCH-----H-HH--HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEEC
T ss_pred --ce-----------------------ECcccce-----e-EE--EEeccCcceEEECCCCCEEEEEEECCCccceEEee
Confidence 00 0000000 0 00 0011234789999999999888765 566777653
Q ss_pred CCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCC---
Q 001319 768 RNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP--- 844 (1101)
Q Consensus 768 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~--- 844 (1101)
.... .+...+..+.|+++|.. ..+..|++||+.+++....+..+
T Consensus 204 ~~~~------------------------------~~~~~~~~~~~~~~G~~---~~~~~l~~~d~~~~~~~~~l~~~~~~ 250 (723)
T 1xfd_A 204 TYTG------------------------------SIYPTVKPYHYPKAGSE---NPSISLHVIGLNGPTHDLEMMPPDDP 250 (723)
T ss_dssp CCSS------------------------------SSSCCCEEEECCBTTSC---CCEEEEEEEESSSSCCCEECCCCCCG
T ss_pred ccCC------------------------------cCCCcceeccCCCCCCC---CCeeEEEEEECCCCceeEEeeCCccC
Confidence 2100 02234678888888763 22457999999998876666654
Q ss_pred ---CCCeeEEEEecCCCCEEEEEeC----CCcEEEEEeecceEEEeecc-CCCCe----eEEEEcCCCCEEEE--EeCCC
Q 001319 845 ---PPASTFLAFHPQDNNIIAIGTE----DSTIHIYNVRVDEVKSKLKG-HQKRI----TGLAFSTSLNILVS--SGADA 910 (1101)
Q Consensus 845 ---~~~i~~l~~s~~~~~~la~g~~----dg~v~iwd~~~~~~~~~~~~-h~~~V----~~l~~s~d~~~l~s--~s~Dg 910 (1101)
...+..++||| |+++|++... +..|++||+.++++...+.. |.+.+ ..++|+|||+.|+. +..++
T Consensus 251 ~~~~~~~~~~~~Sp-Dg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~ 329 (723)
T 1xfd_A 251 RMREYYITMVKWAT-STKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQG 329 (723)
T ss_dssp GGSSEEEEEEEESS-SSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCS
T ss_pred CCccceeEEEEEeC-CCeEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccC
Confidence 45689999999 8888877653 35799999999987766544 33444 38899999997775 45666
Q ss_pred ------cEEEEE-CCCCcc--ccceEEeecCCCCCCCcc-eEEEcCCCCEEEEE-eC---CeEEEEEcCCce--eeeEec
Q 001319 911 ------QLCVWS-IDTWEK--RKSVTIHIPAGKTPTGDT-RVQFNADQVRMLVV-HE---TQLAIYDASKME--RIRQWT 974 (1101)
Q Consensus 911 ------~v~lwd-~~~~~~--~~~~~~~~~~~~~~~~v~-~~~~s~d~~~l~~~-~d---~~i~v~d~~~~~--~~~~~~ 974 (1101)
.|.+|| ..+++. ... ...++ ..+. .++|+|||+.|+.. .+ +.+++|+++... ....+.
T Consensus 330 ~~~~~~~l~~~d~~~~~~~~~~~~----l~~~~--~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~l~ 403 (723)
T 1xfd_A 330 GRGKFYHITVSSSQPNSSNDNIQS----ITSGD--WDVTKILAYDEKGNKIYFLSTEDLPRRRQLYSANTVGNFNRQCLS 403 (723)
T ss_dssp SSSCEEEEEEECSSCCSSSCCCCB----SCCSS--SCEEEEEEEETTTTEEEEEESSSCTTCCEEEEECSSTTCCCBCSS
T ss_pred CCcceeEEEEEeccCCCCccceeE----eecCC--eEEEeeeEEcCCCCEEEEEEcCCCCcceEEEEEeCCCCCCcceec
Confidence 466777 344330 111 11111 2333 36999999999864 33 789999986432 233333
Q ss_pred cCCCCCCCEEEEEEccCCCEEEEEeC-CC--cEEEEeCCCCceeEee
Q 001319 975 PQDALSAPISCAVYSCNSQLVFATFC-DG--NIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 975 ~~~~h~~~v~~v~~s~dg~~l~s~~~-dg--~i~vwd~~~~~~~~~~ 1018 (1101)
....|...+..++|||||++|+.... .+ ...+++..++..+..+
T Consensus 404 ~~~~~~~~~~~~~~spdg~~l~~~~~~~~~p~~~~~~~~~~~~~~~~ 450 (723)
T 1xfd_A 404 CDLVENCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDL 450 (723)
T ss_dssp TTSSSSCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEE
T ss_pred ccccCCCCeEEEEECCCCCEEEEEccCCCCCeEEEEECCCCCEEEEe
Confidence 21113567889999999998886543 22 3455676666554444
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=1.3e-21 Score=241.00 Aligned_cols=243 Identities=11% Similarity=0.066 Sum_probs=175.1
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCC-----ceEEEEeeCCCCC--------------eeEEEEecCCCCEEEEEe-
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMT-----FKVMTTFMSPPPA--------------STFLAFHPQDNNIIAIGT- 865 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~-----~~~~~~~~~~~~~--------------i~~l~~s~~~~~~la~g~- 865 (1101)
.+.+++|||||+.|+++.++.|++||+.+ ++.......+... +.+++||| |+++|++++
T Consensus 122 ~~~~~~~SpdG~~la~~~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~Sp-Dg~~la~~~~ 200 (706)
T 2z3z_A 122 ETASLDFSPVGDRVAYVRNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSP-KGSCLAFYRM 200 (706)
T ss_dssp CCTTCEECTTSSEEEEEETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECT-TSSEEEEEEE
T ss_pred cccCCcCCCCCCEEEEEECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECC-CCCEEEEEEE
Confidence 35567888898888887788899999887 7766544433332 58999999 999999887
Q ss_pred --------------------------------CCCcEEEEEeecceEEEeec--cCCCCeeEEEEcCCCCEEEEEeCCC-
Q 001319 866 --------------------------------EDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLNILVSSGADA- 910 (1101)
Q Consensus 866 --------------------------------~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~s~s~Dg- 910 (1101)
.++.|++||+.+++...... .|...+.+++|+|||++|++++.|+
T Consensus 201 d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~ 280 (706)
T 2z3z_A 201 DQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRA 280 (706)
T ss_dssp ECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTT
T ss_pred CCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCC
Confidence 44689999999988655442 5677899999999999999988776
Q ss_pred ----cEEEEECCCCccccceEEeecCCCCCCCcceEEEcC--CCCEEEEEe-CCeEEEEEcC-CceeeeEeccCCCCCCC
Q 001319 911 ----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA--DQVRMLVVH-ETQLAIYDAS-KMERIRQWTPQDALSAP 982 (1101)
Q Consensus 911 ----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~--d~~~l~~~~-d~~i~v~d~~-~~~~~~~~~~~~~h~~~ 982 (1101)
.|++||+.+++............ ....+..++|+| ||++++++. ++.++||.++ +++.+..+..+ ...
T Consensus 281 ~~~~~v~~~d~~~g~~~~~~~~~~~~~-~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~~~---~~~ 356 (706)
T 2z3z_A 281 QNECKVNAYDAETGRFVRTLFVETDKH-YVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVTKG---EWE 356 (706)
T ss_dssp SCEEEEEEEETTTCCEEEEEEEEECSS-CCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECCCS---SSC
T ss_pred CCeeEEEEEECCCCceeeEEEEccCCC-eECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecCCC---CeE
Confidence 89999999983322221111111 102346789999 999888764 7788888876 56666666554 667
Q ss_pred EEE-EEEccCCCEEEEEeC-CC----cEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001319 983 ISC-AVYSCNSQLVFATFC-DG----NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 983 v~~-v~~s~dg~~l~s~~~-dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
+.. ++|+|||++|+.++. ++ .|..||+.+++. ..+. |... +..++|+| |+.+++.+..+
T Consensus 357 v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~~~-~~l~-----------~~~~--~~~~~~sp-dg~~l~~~~~~ 421 (706)
T 2z3z_A 357 VTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGGKT-KDLT-----------PESG--MHRTQLSP-DGSAIIDIFQS 421 (706)
T ss_dssp EEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCCCC-EESC-----------CSSS--EEEEEECT-TSSEEEEEEEC
T ss_pred EEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCCCc-eecc-----------CCCc--eEEEEECC-CCCEEEEEecC
Confidence 776 899999998876554 44 677778777653 2222 3332 45799999 67777665443
Q ss_pred ----CeEEEEeCCCCC
Q 001319 1057 ----GSVKVMEPSESE 1068 (1101)
Q Consensus 1057 ----g~v~iWd~~~~~ 1068 (1101)
+.|.+||+.+++
T Consensus 422 ~~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 422 PTVPRKVTVTNIGKGS 437 (706)
T ss_dssp SSCSCEEEEEESSSCE
T ss_pred CCCCcEEEEEECCCCe
Confidence 569999998876
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.4e-21 Score=212.12 Aligned_cols=257 Identities=17% Similarity=0.162 Sum_probs=191.8
Q ss_pred EEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecC-Ccc
Q 001319 362 VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG-SND 440 (1101)
Q Consensus 362 sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~-~~~ 440 (1101)
.++.|+.|++||+.+++... +..|...|.+++|+|||++|++++ ++.|++||+.+ ++.
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~--------------------~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~ 75 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRV--------------------VWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSP 75 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEE--------------------EEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSC
T ss_pred CCCcceeEEEEeCCCCceee--------------------eccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCc
Confidence 44678999999998876543 455888999999999999999987 78999999999 765
Q ss_pred cccceeeecc-cCcEEEEEEecCCCceEEEEec--CCceEEEEE--cCCceeEEeecCCcCeEEEecccCCCccEEE-Ee
Q 001319 441 LRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-ST 514 (1101)
Q Consensus 441 ~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s~~--~d~~v~iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~ 514 (1101)
.. ...+| ...|.+++|+||++ +|++++ .++.+.||. ..+.....+..+. .+..++|+| +++.|+ ++
T Consensus 76 ~~---~~~~~~~~~~~~~~~spdg~--~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~sp--dg~~l~~~~ 147 (297)
T 2ojh_A 76 EK---VDTGFATICNNDHGISPDGA--LYAISDKVEFGKSAIYLLPSTGGTPRLMTKNL-PSYWHGWSP--DGKSFTYCG 147 (297)
T ss_dssp EE---CCCTTCCCBCSCCEECTTSS--EEEEEECTTTSSCEEEEEETTCCCCEECCSSS-SEEEEEECT--TSSEEEEEE
T ss_pred eE---eccccccccccceEECCCCC--EEEEEEeCCCCcceEEEEECCCCceEEeecCC-CccceEECC--CCCEEEEEE
Confidence 54 23344 46889999999999 677766 445555555 4455555665444 488889987 556665 78
Q ss_pred ccCCeEEEEecCCC-CeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-CCeeEEEecccCCcceEEEE
Q 001319 515 AIDGKIKAWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTIKRTYAGFRKKSNGVVQ 592 (1101)
Q Consensus 515 ~~d~~i~~wd~~~~-~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~~~~~~~~~~~~v~~~~ 592 (1101)
+.++.+++|+++.. .....+..+...+.+++|+|+|+++++++. .++.+.+|++. .+.....+..+.. .+..++
T Consensus 148 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~~~-~~~~~~ 223 (297)
T 2ojh_A 148 IRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSS---RTGQMQIWRVRVDGSSVERITDSAY-GDWFPH 223 (297)
T ss_dssp EETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEEC---TTSSCEEEEEETTSSCEEECCCCSE-EEEEEE
T ss_pred CCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEec---CCCCccEEEECCCCCCcEEEecCCc-ccCCeE
Confidence 88999999997543 334555666678999999999999887763 25567777765 4555566666554 678899
Q ss_pred EeCCCCEEEEEeCC-----------CcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 593 FDTTQNHFLAVGED-----------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 593 ~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
|+|++++|++++.+ +.|++||+.+++.........+...+..++|+|+|+.|++++.+.
T Consensus 224 ~s~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 224 PSPSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLFGGQGTMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp ECTTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEEESTTTSCSCCBCTTSSEEEEEEECC
T ss_pred ECCCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccCCCCcccccceECCCCCEEEEEEecc
Confidence 99999999988765 569999999886644443222334689999999999999887654
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=1.2e-20 Score=209.78 Aligned_cols=244 Identities=9% Similarity=0.127 Sum_probs=175.0
Q ss_pred CCCCEeEEEecCCCCeEEEEc-C-CeEEEEECC--Cce--EEEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEe
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-G-GKISLFNMM--TFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNV 875 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-d-g~i~vwd~~--~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~ 875 (1101)
+...+.+++|+|+|+++++++ + +.|.+|++. +++ .+..+..+. .+..++|+| ++++|++++ .++.|.+||+
T Consensus 36 ~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~-dg~~l~~~~~~~~~i~~~d~ 113 (343)
T 1ri6_A 36 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDH-QGQFVFVGSYNAGNVSVTRL 113 (343)
T ss_dssp CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECT-TSSEEEEEETTTTEEEEEEE
T ss_pred cCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcC-CCCEEEEEecCCCeEEEEEC
Confidence 556788899999999888876 4 899999997 554 344555444 789999999 888776665 4889999999
Q ss_pred ---ecceEEEeeccCCCCeeEEEEcCCCCEEEEEe-CCCcEEEEECCC-Cccccce--EEeecCCCCCCCcceEEEcCCC
Q 001319 876 ---RVDEVKSKLKGHQKRITGLAFSTSLNILVSSG-ADAQLCVWSIDT-WEKRKSV--TIHIPAGKTPTGDTRVQFNADQ 948 (1101)
Q Consensus 876 ---~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~-~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~ 948 (1101)
.+.+.+..+..+ ..+.+++|+|++++|++++ .++.|++||+.+ ++..... ......+ ..+..++|+|++
T Consensus 114 ~~~~~~~~~~~~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~pdg 189 (343)
T 1ri6_A 114 EDGLPVGVVDVVEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEG---AGPRHMVFHPNE 189 (343)
T ss_dssp ETTEEEEEEEEECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTT---CCEEEEEECTTS
T ss_pred CCCccccccccccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCC---CCcceEEECCCC
Confidence 455556665544 4589999999999888877 899999999987 5433222 2222222 467789999999
Q ss_pred CEEEEE--eCCeEEEEEcCC--cee--eeEec---cCCCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCC--CC--ce
Q 001319 949 VRMLVV--HETQLAIYDASK--MER--IRQWT---PQDALSAPISCAVYSCNSQLVFA-TFCDGNIGVFDAD--TL--RL 1014 (1101)
Q Consensus 949 ~~l~~~--~d~~i~v~d~~~--~~~--~~~~~---~~~~h~~~v~~v~~s~dg~~l~s-~~~dg~i~vwd~~--~~--~~ 1014 (1101)
++++++ .++.+.+|++.. ++. ..... ........+..++|+|||++|++ +..++.|.+||+. ++ +.
T Consensus 190 ~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~ 269 (343)
T 1ri6_A 190 QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSK 269 (343)
T ss_dssp SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEE
T ss_pred CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEE
Confidence 987764 478999999953 432 22222 11112356789999999998875 4579999999998 33 33
Q ss_pred eEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE-CCCeEEEEeCCC
Q 001319 1015 RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL-TDGSVKVMEPSE 1066 (1101)
Q Consensus 1015 ~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~-~Dg~v~iWd~~~ 1066 (1101)
+..+.. +.. +..++|+| ++.+|++++ .|+.|.+|++..
T Consensus 270 ~~~~~~----------~~~---~~~~~~s~-dg~~l~~~~~~~~~v~v~~~d~ 308 (343)
T 1ri6_A 270 EGFQPT----------ETQ---PRGFNVDH-SGKYLIAAGQKSHHISVYEIVG 308 (343)
T ss_dssp EEEEEC----------SSS---CCCEEECT-TSSEEEEECTTTCEEEEEEEET
T ss_pred eeeecC----------CCc---cceEEECC-CCCEEEEecCCCCeEEEEEEcC
Confidence 333331 111 45799999 688777776 689999996553
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=2.1e-20 Score=207.88 Aligned_cols=274 Identities=14% Similarity=0.168 Sum_probs=192.3
Q ss_pred CceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC-CeEEEE
Q 001319 356 HQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK-HLIQLY 433 (1101)
Q Consensus 356 g~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d-~~i~vw 433 (1101)
+++++++++.|+.|++|+++. ++.... ....|...+.+++|+|||++|++++.+ +.|.+|
T Consensus 4 ~~~l~~~~~~~~~v~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~ 65 (343)
T 1ri6_A 4 KQTVYIASPESQQIHVWNLNHEGALTLT------------------QVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAY 65 (343)
T ss_dssp EEEEEEEEGGGTEEEEEEECTTSCEEEE------------------EEEECSSCCCCEEECTTSSEEEEEETTTTEEEEE
T ss_pred eEEEEEeCCCCCeEEEEEECCCCcEEEe------------------eeEecCCCCceEEECCCCCEEEEeecCCCeEEEE
Confidence 345667768899999999963 322110 123366789999999999999999886 899999
Q ss_pred eec--CCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc-CCc---eeEEeecCCcCeEEEecccCCC
Q 001319 434 SYA--GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGR---KLFNFEGHEAPVYSICPHHKEN 507 (1101)
Q Consensus 434 d~~--~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~-~~~---~~~~~~~h~~~v~~v~~~~~~~ 507 (1101)
++. +++. .....+..+. .+..++|+|+++. +++++..++.|.+||. ++. .+..+.. ...+.+++|++ +
T Consensus 66 ~~~~~~~~~-~~~~~~~~~~-~~~~~~~s~dg~~-l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~s~--d 139 (343)
T 1ri6_A 66 RIAPDDGAL-TFAAESALPG-SLTHISTDHQGQF-VFVGSYNAGNVSVTRLEDGLPVGVVDVVEG-LDGCHSANISP--D 139 (343)
T ss_dssp EECTTTCCE-EEEEEEECSS-CCSEEEECTTSSE-EEEEETTTTEEEEEEEETTEEEEEEEEECC-CTTBCCCEECT--T
T ss_pred EecCCCCce-eeccccccCC-CCcEEEEcCCCCE-EEEEecCCCeEEEEECCCCccccccccccC-CCCceEEEECC--C
Confidence 998 5542 2222344433 7899999999994 3445556899999994 332 3344443 34588889977 5
Q ss_pred ccEEEEec-cCCeEEEEecCC-CCeee----ecc-CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC--Cee--
Q 001319 508 IQFIFSTA-IDGKIKAWLYDT-MGSRV----DYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE--GTI-- 576 (1101)
Q Consensus 508 ~~~l~s~~-~d~~i~~wd~~~-~~~~~----~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~--~~~-- 576 (1101)
++++++++ .++.|++||+.+ +.... ... .....+..++|+|+|+++++++. .++.|.+|++.. ++.
T Consensus 140 g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~---~~~~i~~~~~~~~~g~~~~ 216 (343)
T 1ri6_A 140 NRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIEC 216 (343)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEE
T ss_pred CCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEE
Confidence 56777666 899999999987 43321 222 23447889999999998876653 378999999953 433
Q ss_pred EEEecccC-----CcceEEEEEeCCCCEEEEEe-CCCcEEEEECC--C--CeeeEeeccCCCCCCCCeeEEecCCCEEEE
Q 001319 577 KRTYAGFR-----KKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMD--N--VNILTSTDAEGGLPNLPRLRFSKEGNLLAV 646 (1101)
Q Consensus 577 ~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~--~--~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~ 646 (1101)
...+.... ...+..++|+|++++++++. .++.|.+||+. + .+.+..+.... .+..++|+|+|++|++
T Consensus 217 ~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~ 293 (343)
T 1ri6_A 217 VQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTET---QPRGFNVDHSGKYLIA 293 (343)
T ss_dssp EEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSS---SCCCEEECTTSSEEEE
T ss_pred EeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCC---ccceEEECCCCCEEEE
Confidence 22222111 12355799999999888654 78999999998 2 34444444332 3789999999999988
Q ss_pred EE-cCCcEEEEEcc
Q 001319 647 TT-ADNGFKILANA 659 (1101)
Q Consensus 647 ~~-~d~~i~iwd~~ 659 (1101)
++ .++.|.+|++.
T Consensus 294 ~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 294 AGQKSHHISVYEIV 307 (343)
T ss_dssp ECTTTCEEEEEEEE
T ss_pred ecCCCCeEEEEEEc
Confidence 88 57999999665
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.3e-20 Score=206.39 Aligned_cols=276 Identities=10% Similarity=0.046 Sum_probs=203.2
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee-EEEecccCC
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI-KRTYAGFRK 585 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~-~~~~~~~~~ 585 (1101)
.+..+++.+.++.|++||..+++....+..+...+ .++|+|+|+++++++. +++.|.+||..+++. ...+..+..
T Consensus 9 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~-~~~~s~dg~~l~~~~~---~~~~i~~~d~~~~~~~~~~~~~~~~ 84 (331)
T 3u4y_A 9 SNFGIVVEQHLRRISFFSTDTLEILNQITLGYDFV-DTAITSDCSNVVVTSD---FCQTLVQIETQLEPPKVVAIQEGQS 84 (331)
T ss_dssp CCEEEEEEGGGTEEEEEETTTCCEEEEEECCCCEE-EEEECSSSCEEEEEES---TTCEEEEEECSSSSCEEEEEEECSS
T ss_pred CCEEEEEecCCCeEEEEeCcccceeeeEEccCCcc-eEEEcCCCCEEEEEeC---CCCeEEEEECCCCceeEEecccCCC
Confidence 34567888899999999999988877777666667 9999999998887764 467999999999987 666665544
Q ss_pred cceEEEEEeCCCCEEEEEeCCC---cEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE-EcCCc-EEEEEccc
Q 001319 586 KSNGVVQFDTTQNHFLAVGEDS---QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNG-FKILANAI 660 (1101)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~~dg---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~-i~iwd~~~ 660 (1101)
....++|+|++++++++..++ .|.+||+.+++.+..+.... ...+++|+|+|++++++ ..++. +.+|++..
T Consensus 85 -~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~ 160 (331)
T 3u4y_A 85 -SMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPY---DAVGIAISPNGNGLILIDRSSANTVRRFKIDA 160 (331)
T ss_dssp -CCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCT---TEEEEEECTTSSCEEEEEETTTTEEEEEEECT
T ss_pred -CccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCC---CccceEECCCCCEEEEEecCCCceEEEEEECC
Confidence 444489999999999655553 89999999999888776543 35899999999866555 55588 99999764
Q ss_pred cccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccE
Q 001319 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKV 740 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i 740 (1101)
......
T Consensus 161 ~g~~~~-------------------------------------------------------------------------- 166 (331)
T 3u4y_A 161 DGVLFD-------------------------------------------------------------------------- 166 (331)
T ss_dssp TCCEEE--------------------------------------------------------------------------
T ss_pred CCcEee--------------------------------------------------------------------------
Confidence 310000
Q ss_pred EEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEE
Q 001319 741 VRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVM 820 (1101)
Q Consensus 741 ~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la 820 (1101)
.. .. .+ ........++|+|||++++
T Consensus 167 --~~----~~-~~------------------------------------------------~~~~~~~~~~~spdg~~l~ 191 (331)
T 3u4y_A 167 --TG----QE-FI------------------------------------------------SGGTRPFNITFTPDGNFAF 191 (331)
T ss_dssp --EE----EE-EE------------------------------------------------CSSSSEEEEEECTTSSEEE
T ss_pred --cC----Cc-cc------------------------------------------------cCCCCccceEECCCCCEEE
Confidence 00 00 00 0223367899999999665
Q ss_pred EEc--CCeEEEEECCCceE---EEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceE--EEeeccC----C
Q 001319 821 SAT--GGKISLFNMMTFKV---MTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEV--KSKLKGH----Q 888 (1101)
Q Consensus 821 ~~~--dg~i~vwd~~~~~~---~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~--~~~~~~h----~ 888 (1101)
++. ++.|.+||+.+++. +..+.. ...+..++|+| ++++|++++ .++.|.+||+.+++. +..+..+ .
T Consensus 192 v~~~~~~~v~v~d~~~~~~~~~~~~~~~-~~~~~~~~~sp-dg~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~ 269 (331)
T 3u4y_A 192 VANLIGNSIGILETQNPENITLLNAVGT-NNLPGTIVVSR-DGSTVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDP 269 (331)
T ss_dssp EEETTTTEEEEEECSSTTSCEEEEEEEC-SSCCCCEEECT-TSSEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCC
T ss_pred EEeCCCCeEEEEECCCCcccceeeeccC-CCCCceEEECC-CCCEEEEEEcCCCEEEEEECCCCceeeecccccccccCC
Confidence 543 78899999998887 777764 46678999999 888666554 578899999998877 3333322 2
Q ss_pred CC---eeEEEEcCCCCEEEEEe-CCCcEEEEECCCCc
Q 001319 889 KR---ITGLAFSTSLNILVSSG-ADAQLCVWSIDTWE 921 (1101)
Q Consensus 889 ~~---V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~~ 921 (1101)
.. +..++|+||+++|++++ .++.|.+||+....
T Consensus 270 ~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~ 306 (331)
T 3u4y_A 270 RPLFGANQMALNKTETKLFISANISRELKVFTISGKV 306 (331)
T ss_dssp GGGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSCE
T ss_pred CCcccccceEECCCCCEEEEecCCCCcEEEEEecCCc
Confidence 22 35589999999886555 56799999998743
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=8.2e-20 Score=204.01 Aligned_cols=276 Identities=10% Similarity=0.076 Sum_probs=211.6
Q ss_pred ceEEEEEeCCCCEEEEEeC-------CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEc
Q 001319 587 SNGVVQFDTTQNHFLAVGE-------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILAN 658 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~-------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~ 658 (1101)
.+..++|+|+++++++++. ++.|.+||..+++.+..+.... .+..++|+|+|+.++++. .++.|.+||.
T Consensus 42 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~v~~~~~~~v~~~d~ 118 (353)
T 3vgz_A 42 GAYEMAYSQQENALWLATSQSRKLDKGGVVYRLDPVTLEVTQAIHNDL---KPFGATINNTTQTLWFGNTVNSAVTAIDA 118 (353)
T ss_dssp SEEEEEEETTTTEEEEEECCCTTTEESEEEEEECTTTCCEEEEEEESS---CCCSEEEETTTTEEEEEETTTTEEEEEET
T ss_pred CccceEECCCCCEEEEEcCCCcCCCCCccEEEEcCCCCeEEEEEecCC---CcceEEECCCCCEEEEEecCCCEEEEEeC
Confidence 4677999999999988773 5689999999999888876543 368899999999666555 4789999998
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.++. ....+.. .
T Consensus 119 ~~~~-~~~~~~~------------------------------------------------------------~------- 130 (353)
T 3vgz_A 119 KTGE-VKGRLVL------------------------------------------------------------D------- 130 (353)
T ss_dssp TTCC-EEEEEES------------------------------------------------------------C-------
T ss_pred CCCe-eEEEEec------------------------------------------------------------C-------
Confidence 7652 1111000 0
Q ss_pred cEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCe
Q 001319 739 KVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSY 818 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~ 818 (1101)
.+ . .... .....+.+++|+|||++
T Consensus 131 ---------~~-------~-----------------------------~~~~-----------~~~~~~~~~~~s~dg~~ 154 (353)
T 3vgz_A 131 ---------DR-------K-----------------------------RTEE-----------VRPLQPRELVADDATNT 154 (353)
T ss_dssp ---------CC-------C-----------------------------CCSS-----------CCCCEEEEEEEETTTTE
T ss_pred ---------CC-------c-----------------------------cccc-----------cCCCCCceEEECCCCCE
Confidence 00 0 0000 01223577899999997
Q ss_pred EEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc----CCCCe
Q 001319 819 VMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG----HQKRI 891 (1101)
Q Consensus 819 la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~----h~~~V 891 (1101)
++++. ++.|.+||..+++.+..+..+...+..++|+| ++++|++++.++.|.+||+.+++.+..+.. +...+
T Consensus 155 l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 233 (353)
T 3vgz_A 155 VYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDS-EGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFF 233 (353)
T ss_dssp EEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEET-TTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCE
T ss_pred EEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECC-CCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCccc
Confidence 76664 67899999999999988886666789999999 899999999999999999999998877654 55678
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCce
Q 001319 892 TGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME 968 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~ 968 (1101)
.+++|+|+++++++++. ++.|.+||+.+++....... .....++|+|++++++++. ++.|.+||..+++
T Consensus 234 ~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~--------~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~ 305 (353)
T 3vgz_A 234 INISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAA--------PESLAVLFNPARNEAYVTHRQAGKVSVIDAKSYK 305 (353)
T ss_dssp EEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEEC--------SSCCCEEEETTTTEEEEEETTTTEEEEEETTTTE
T ss_pred ceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEc--------CCCceEEECCCCCEEEEEECCCCeEEEEECCCCe
Confidence 89999999997776665 48999999999876544332 1235699999999777644 7999999999999
Q ss_pred eeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 969 RIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 969 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
.+..+.. ...+..++|+|||++|+++..++
T Consensus 306 ~~~~~~~----~~~~~~~~~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 306 VVKTFDT----PTHPNSLALSADGKTLYVSVKQK 335 (353)
T ss_dssp EEEEEEC----CSEEEEEEECTTSCEEEEEEECC
T ss_pred EEEEEec----CCCCCeEEEcCCCCEEEEEEccc
Confidence 9888765 45789999999999888777664
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=5.4e-20 Score=203.96 Aligned_cols=280 Identities=13% Similarity=0.121 Sum_probs=207.4
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE-EcCCcEEEEEccccccccccccCCCcccc
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+++++++.++.|++||..+++.+..+........+..++|+|+|+.++++ ..++.|.+||+.++. ....+..
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~-~~~~~~~------ 74 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGE-TLGRIDL------ 74 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCC-EEEEEEC------
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCC-eEeeEEc------
Confidence 47888999999999999999988887654311136889999999876554 457899999987651 1110000
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
.
T Consensus 75 ---------------------------------------------------------------------~---------- 75 (337)
T 1pby_B 75 ---------------------------------------------------------------------S---------- 75 (337)
T ss_dssp ---------------------------------------------------------------------C----------
T ss_pred ---------------------------------------------------------------------C----------
Confidence 0
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEE-------------c
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSA-------------T 823 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~-------------~ 823 (1101)
..+ .+...+.+++|+|||++++++ .
T Consensus 76 ~~~------------------------------------------~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~ 113 (337)
T 1pby_B 76 TPE------------------------------------------ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113 (337)
T ss_dssp BTT------------------------------------------EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEEC
T ss_pred Ccc------------------------------------------cccccccceEECCCCCEEEEEeccccccccccccc
Confidence 000 001123456777777776666 3
Q ss_pred CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEE
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNIL 903 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l 903 (1101)
++.|.+||+.+++.+..+.. ...+.+++|+| ++++|+++ ++.|++||+.+++.+..+..+... ..++|+||++.+
T Consensus 114 ~~~i~v~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~--~~~i~~~d~~~~~~~~~~~~~~~~-~~~~~s~dg~~l 188 (337)
T 1pby_B 114 PTRVALYDAETLSRRKAFEA-PRQITMLAWAR-DGSKLYGL--GRDLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAV 188 (337)
T ss_dssp CCEEEEEETTTTEEEEEEEC-CSSCCCEEECT-TSSCEEEE--SSSEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCC
T ss_pred CceEEEEECCCCcEEEEEeC-CCCcceeEECC-CCCEEEEe--CCeEEEEECCCCcEeeeeeccccC-CCceeCCCccEE
Confidence 58899999999998887765 45688899999 88877777 689999999999988777654411 133789999877
Q ss_pred EEEeCCC------------------------cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeE
Q 001319 904 VSSGADA------------------------QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 959 (1101)
Q Consensus 904 ~s~s~Dg------------------------~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i 959 (1101)
+..+.++ .|.+||+.+++.. ...... + ...+..++|+||+++++++ ++.|
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~-~~~~~~---~-~~~~~~~~~s~dg~~l~~~-~~~v 262 (337)
T 1pby_B 189 WNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMA-MREVRI---M-DVFYFSTAVNPAKTRAFGA-YNVL 262 (337)
T ss_dssp CCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEE-EEEEEE---C-SSCEEEEEECTTSSEEEEE-ESEE
T ss_pred eeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCce-EeecCC---C-CCceeeEEECCCCCEEEEe-CCeE
Confidence 6554332 4689999998764 222221 1 1456789999999999988 7999
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.+||+.+++.+..+.. ...+.+++|+|||++|++++.++.|++||+.+++.+..+..
T Consensus 263 ~~~d~~~~~~~~~~~~----~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 263 ESFDLEKNASIKRVPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEEETTTTEEEEEEEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EEEECCCCcCcceecC----CCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 9999999998877765 34578999999999999999999999999999998887764
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.86 E-value=1.8e-19 Score=200.64 Aligned_cols=249 Identities=11% Similarity=0.161 Sum_probs=172.1
Q ss_pred CCCCEeEEEecCCCCeEEEEc---CCeEEEEECCCce--EEEEeeCCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEee
Q 001319 803 LEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVR 876 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~ 876 (1101)
+......++|+|||++++++. ++.|.+|++.+++ .+..+..+...+..++|+| ++++|++++ .++.|.+|++.
T Consensus 38 ~~~~p~~~a~spdg~l~~~~~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~sp-dg~~l~~~~~~~~~v~v~~~~ 116 (347)
T 3hfq_A 38 ATQNPTYLALSAKDCLYSVDKEDDEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDE-ARQLVYSANYHKGTAEVMKIA 116 (347)
T ss_dssp ECSCCCCEEECTTCEEEEEEEETTEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEET-TTTEEEEEETTTTEEEEEEEC
T ss_pred ccCCcceEEEccCCeEEEEEecCCCceEEEEEecCCcEEEeeeeecCCCCCEEEEECC-CCCEEEEEeCCCCEEEEEEeC
Confidence 345567899999999444443 3789999998766 3445455677899999999 888888777 78999999996
Q ss_pred -cc--eEEEeecc---------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECC-CCccccceEEeecCCCCCCCcceEE
Q 001319 877 -VD--EVKSKLKG---------HQKRITGLAFSTSLNILVSSGADAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDTRVQ 943 (1101)
Q Consensus 877 -~~--~~~~~~~~---------h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~~~~ 943 (1101)
++ +.+..+.. +...+.+++|+|||+.+++...++.|++|++. +++...........+ .....++
T Consensus 117 ~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g---~~p~~~~ 193 (347)
T 3hfq_A 117 ADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAG---FGPRHLV 193 (347)
T ss_dssp TTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTT---CCEEEEE
T ss_pred CCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCC---CCCceEE
Confidence 22 33333321 12348899999999977777778899999998 444322222222222 4567899
Q ss_pred EcCCCCEEEEEe--CCeEEEEEcCC--cee--eeEeccCCC---CCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCC-C
Q 001319 944 FNADQVRMLVVH--ETQLAIYDASK--MER--IRQWTPQDA---LSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADT-L 1012 (1101)
Q Consensus 944 ~s~d~~~l~~~~--d~~i~v~d~~~--~~~--~~~~~~~~~---h~~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~~-~ 1012 (1101)
|+|||++++++. ++.+.+|+++. ++. +..+..... ....+..++|+|||++|+ +...++.|.+|++.. +
T Consensus 194 ~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g 273 (347)
T 3hfq_A 194 FSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADG 273 (347)
T ss_dssp ECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGG
T ss_pred ECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCC
Confidence 999999877743 78999999874 443 222222110 014589999999999885 555689999999973 2
Q ss_pred --ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEEC-CCeEEEE--eCCCCC
Q 001319 1013 --RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT-DGSVKVM--EPSESE 1068 (1101)
Q Consensus 1013 --~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~-Dg~v~iW--d~~~~~ 1068 (1101)
+.+..+.. + ...+..++|+| |+.+|++++. ++.|.+| |..+++
T Consensus 274 ~~~~~~~~~~----------~--~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~d~~tg~ 321 (347)
T 3hfq_A 274 HLTLIQQIST----------E--GDFPRDFDLDP-TEAFVVVVNQNTDNATLYARDLTSGK 321 (347)
T ss_dssp CEEEEEEEEC----------S--SSCCCEEEECT-TSSEEEEEETTTTEEEEEEECTTTCC
T ss_pred cEEEeEEEec----------C--CCCcCeEEECC-CCCEEEEEEcCCCcEEEEEEeCCCCe
Confidence 33333321 1 22345899999 6887777765 5899999 555565
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.86 E-value=2e-19 Score=199.44 Aligned_cols=302 Identities=9% Similarity=0.059 Sum_probs=206.5
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCC--ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC--
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-- 584 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~--~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-- 584 (1101)
+++++++.++.|++||+.+++....+..... .+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~---~~~~v~~~d~~~~~~~~~~~~~~~~ 78 (337)
T 1pby_B 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeC---CCCeEEEEECCCCCeEeeEEcCCcc
Confidence 4789999999999999998877766654332 4788999999988776653 36789999999999887776432
Q ss_pred --CcceEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 585 --KKSNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 585 --~~~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
...+..++|+|+|+++++++ .++.|.+||+.+++.+..+.... .+.+++|+|+|++|+++ +
T Consensus 79 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~--~ 153 (337)
T 1pby_B 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGL--G 153 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEE--S
T ss_pred cccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC---CcceeEECCCCCEEEEe--C
Confidence 11355689999999999886 57999999999998887776532 46889999999988888 6
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
+.|.+||+.++. ....+..... .....++|+++.+......... +
T Consensus 154 ~~i~~~d~~~~~-~~~~~~~~~~------~~~~~~s~dg~~l~~~~~~~~~--------------~-------------- 198 (337)
T 1pby_B 154 RDLHVMDPEAGT-LVEDKPIQSW------EAETYAQPDVLAVWNQHESSGV--------------M-------------- 198 (337)
T ss_dssp SSEEEEETTTTE-EEEEECSTTT------TTTTBCCCBCCCCCCCCTTTTE--------------E--------------
T ss_pred CeEEEEECCCCc-Eeeeeecccc------CCCceeCCCccEEeeeccCCCc--------------e--------------
Confidence 899999998773 3222221110 0112556666554322111100 0
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
..+.......++..... .....+.+|| ..++........ .+...+.++
T Consensus 199 -------~~~~~~~~~~~~~~~~~-~~~~~v~~~d----------------------~~~~~~~~~~~~--~~~~~~~~~ 246 (337)
T 1pby_B 199 -------ATPFYTARKDIDPADPT-AYRTGLLTMD----------------------LETGEMAMREVR--IMDVFYFST 246 (337)
T ss_dssp -------EEEEEEEBTTSCTTSGG-GEEEEEEEEE----------------------TTTCCEEEEEEE--ECSSCEEEE
T ss_pred -------eeeeecccccccccccc-ccccceEEEe----------------------CCCCCceEeecC--CCCCceeeE
Confidence 00000000000000000 0111344444 444443222221 245678899
Q ss_pred EecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCC
Q 001319 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ 888 (1101)
Q Consensus 811 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~ 888 (1101)
+|+|||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|++||+.+++.+..+..+.
T Consensus 247 ~~s~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~i~v~d~~~~~~~~~~~~~~ 321 (337)
T 1pby_B 247 AVNPAKTRAFGA-YNVLESFDLEKNASIKRVPL-PHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDLPG 321 (337)
T ss_dssp EECTTSSEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEECGG
T ss_pred EECCCCCEEEEe-CCeEEEEECCCCcCcceecC-CCceeeEEECC-CCCEEEEEcCCCcEEEEECcCCcEEEEEEcCC
Confidence 999999999888 79999999999998887764 35678999999 88888888999999999999999888776543
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.85 E-value=4.2e-20 Score=221.36 Aligned_cols=271 Identities=11% Similarity=0.054 Sum_probs=195.7
Q ss_pred CCcEEEEEEecCCceEEEEEec-cCcEEEEecCCCceeccccceeecccccCccccccccccCC-ccEEEEEEccCCCEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSS-NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYV 421 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~-d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~l 421 (1101)
..+|++++|||||++| |+++. ||++.||++++++... +..|. ..|.+++|||| +.+
T Consensus 21 ~~~~~~~~~~~DG~~l-a~~s~~~g~~~lw~~~~g~~~~--------------------lt~~~~~~~~~~~~spd-~~l 78 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKL-LVVGFSEGSVNAYLYDGGETVK--------------------LNREPINSVLDPHYGVG-RVI 78 (582)
T ss_dssp HSCEEEEEEEETTTEE-EEEEEETTEEEEEEEETTEEEE--------------------CCSSCCSEECEECTTCS-EEE
T ss_pred ccchheeecCCCCCeE-EEEEccCCceeEEEEcCCCcEe--------------------eecccccccccccCCCC-eEE
Confidence 3479999999999965 55555 9999999997665432 33444 68999999999 777
Q ss_pred EEEEC---CCeEEEEeecC--CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 422 GVAFT---KHLIQLYSYAG--SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 422 as~~~---d~~i~vwd~~~--~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
++++. +....+|.+.. ..... .+..+. .+...+|+|||+.+++++++.++.+ +|| .+++...... +..
T Consensus 79 ~~~~~~~g~~~~~l~~~~~~~~g~~~---~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~~-l~d~~~g~~~~l~~-~~~ 152 (582)
T 3o4h_A 79 LVRDVSKGAEQHALFKVNTSRPGEEQ---RLEAVK-PMRILSGVDTGEAVVFTGATEDRVA-LYALDGGGLRELAR-LPG 152 (582)
T ss_dssp EEEECSTTSCCEEEEEEETTSTTCCE---ECTTSC-SBEEEEEEECSSCEEEEEECSSCEE-EEEEETTEEEEEEE-ESS
T ss_pred EEeccCCCCcceEEEEEeccCCCccc---cccCCC-CceeeeeCCCCCeEEEEecCCCCce-EEEccCCcEEEeec-CCC
Confidence 77765 45567766654 22112 122222 3446799999987566666666555 999 6665544333 333
Q ss_pred CeEEEecccCCCccEEEEeccC----CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 496 PVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
.+++|+| ||++|++++.+ +.|++||+.+++.. .+..+...+..++|||||++|+++.. ++...|++||+
T Consensus 153 --~~~~~sp--DG~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~~~~~~~~~~~~SpDG~~l~~~~~--~~~~~i~~~d~ 225 (582)
T 3o4h_A 153 --FGFVSDI--RGDLIAGLGFFGGGRVSLFTSNLSSGGLR-VFDSGEGSFSSASISPGMKVTAGLET--AREARLVTVDP 225 (582)
T ss_dssp --CEEEEEE--ETTEEEEEEEEETTEEEEEEEETTTCCCE-EECCSSCEEEEEEECTTSCEEEEEEC--SSCEEEEEECT
T ss_pred --ceEEECC--CCCEEEEEEEcCCCCeEEEEEcCCCCCce-EeecCCCccccceECCCCCEEEEccC--CCeeEEEEEcC
Confidence 7778876 77899988877 78999999877655 55667778899999999999995443 23348999999
Q ss_pred CCCeeEEEecccCCcceEEEE--------EeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 572 SEGTIKRTYAGFRKKSNGVVQ--------FDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~~~v~~~~--------~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
.+++.. .+.++.. .+..++ |+|||..+++++.++.+++|++ ++..... ...+.+++|+ ++++
T Consensus 226 ~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~--g~~~~~~-----~~~v~~~~~s-dg~~ 295 (582)
T 3o4h_A 226 RDGSVE-DLELPSK-DFSSYRPTAITWLGYLPDGRLAVVARREGRSAVFID--GERVEAP-----QGNHGRVVLW-RGKL 295 (582)
T ss_dssp TTCCEE-ECCCSCS-HHHHHCCSEEEEEEECTTSCEEEEEEETTEEEEEET--TEEECCC-----SSEEEEEEEE-TTEE
T ss_pred CCCcEE-EccCCCc-ChhhhhhccccceeEcCCCcEEEEEEcCCcEEEEEE--CCeeccC-----CCceEEEEec-CCEE
Confidence 999887 6666544 444455 9999988888999999999999 6655421 1357889999 9999
Q ss_pred EEEEEcCCc---EEEEEcc
Q 001319 644 LAVTTADNG---FKILANA 659 (1101)
Q Consensus 644 l~~~~~d~~---i~iwd~~ 659 (1101)
+++++.+.+ +.+|+..
T Consensus 296 l~~~s~~~~p~~l~~~d~~ 314 (582)
T 3o4h_A 296 VTSHTSLSTPPRIVSLPSG 314 (582)
T ss_dssp EEEEEETTEEEEEEEETTC
T ss_pred EEEEcCCCCCCeEEEEcCC
Confidence 988887744 5555543
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.9e-20 Score=199.35 Aligned_cols=244 Identities=13% Similarity=0.092 Sum_probs=182.3
Q ss_pred CcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCC-CceeccccceeecccccCccccccccccC-CccEEE
Q 001319 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAM-RDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSR 411 (1101)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~-~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~v~~ 411 (1101)
.........|...|.+++|||||+++ ++++ ++.|.+||+.+ ++... +..+| ...|.+
T Consensus 31 ~~~~~~~~~~~~~v~~~~~spdg~~l-~~~~-~~~i~~~d~~~~~~~~~-------------------~~~~~~~~~~~~ 89 (297)
T 2ojh_A 31 TRKMRVVWQTPELFEAPNWSPDGKYL-LLNS-EGLLYRLSLAGDPSPEK-------------------VDTGFATICNND 89 (297)
T ss_dssp TTEEEEEEEESSCCEEEEECTTSSEE-EEEE-TTEEEEEESSSCCSCEE-------------------CCCTTCCCBCSC
T ss_pred CCceeeeccCCcceEeeEECCCCCEE-EEEc-CCeEEEEeCCCCCCceE-------------------eccccccccccc
Confidence 34455666789999999999999954 6654 88999999988 76543 13334 478899
Q ss_pred EEEccCCCEEEEEE--CCCeEEEEee--cCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCc
Q 001319 412 VAWSPDGNYVGVAF--TKHLIQLYSY--AGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGR 485 (1101)
Q Consensus 412 ~~~spdg~~las~~--~d~~i~vwd~--~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~ 485 (1101)
++|+|||++|++++ .++.+.||.+ .+++ .. .+..+. .+..++|+||++. ++++++.|+.+++|+ ..+.
T Consensus 90 ~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~---~~~~~~-~~~~~~~spdg~~-l~~~~~~~~~~~l~~~~~~~~ 163 (297)
T 2ojh_A 90 HGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PR---LMTKNL-PSYWHGWSPDGKS-FTYCGIRDQVFDIYSMDIDSG 163 (297)
T ss_dssp CEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CE---ECCSSS-SEEEEEECTTSSE-EEEEEEETTEEEEEEEETTTC
T ss_pred eEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eE---EeecCC-CccceEECCCCCE-EEEEECCCCceEEEEEECCCC
Confidence 99999999999998 3345555555 4443 22 333333 4899999999994 344788899999999 5566
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEec-cCCeEEEEecC-CCCeeeeccCCCCceEEEEEccCCCEEEEeecCCC--
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD-- 561 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~-- 561 (1101)
....+..+...+.+++|++ +++.|+.++ .++.+++|+++ .......+..+...+.+++|+|+|++|++++.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~s~--dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~ 241 (297)
T 2ojh_A 164 VETRLTHGEGRNDGPDYSP--DGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVF 241 (297)
T ss_dssp CEEECCCSSSCEEEEEECT--TSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCC
T ss_pred cceEcccCCCccccceECC--CCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCC
Confidence 6677888888999999987 556666555 58999999987 45556666667778999999999999998875321
Q ss_pred -----CCceEEEEeCCCCeeEEE--ecccCCcceEEEEEeCCCCEEEEEeCCC
Q 001319 562 -----GDSFLVEWNESEGTIKRT--YAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1101)
Q Consensus 562 -----~~~~i~iwd~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1101)
++..|++||+.+++.... +.++.. .+..++|+|++++|++++.+.
T Consensus 242 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 242 DHPRDLDVRVQLMDMDGGNVETLFDLFGGQG-TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp SCCSSEEEEEEEEETTSCSCEEEEEEEESTT-TSCSCCBCTTSSEEEEEEECC
T ss_pred cccccCceEEEEEecCCCCceeeeccCCCCc-ccccceECCCCCEEEEEEecc
Confidence 236799999998866433 335544 677799999999999887543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.84 E-value=3.7e-20 Score=228.25 Aligned_cols=277 Identities=11% Similarity=0.092 Sum_probs=194.0
Q ss_pred EEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCc---cEEEEEEccCCCEEEEEE
Q 001319 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPI---SVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 349 ~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~---~v~~~~~spdg~~las~~ 425 (1101)
.++|+|||+ +++++ .|+.|++||+.+++... ++.+|.. .|.+++|||||++||+++
T Consensus 20 ~~~~s~dg~-~~~~~-~d~~i~~~~~~~g~~~~-------------------~~~~~~~~~~~~~~~~~SpDg~~la~~~ 78 (719)
T 1z68_A 20 FPNWISGQE-YLHQS-ADNNIVLYNIETGQSYT-------------------ILSNRTMKSVNASNYGLSPDRQFVYLES 78 (719)
T ss_dssp CCEESSSSE-EEEEC-TTSCEEEEESSSCCEEE-------------------EECHHHHHTTTCSEEEECTTSSEEEEEE
T ss_pred ccEECCCCe-EEEEc-CCCCEEEEEcCCCcEEE-------------------EEccccccccceeeEEECCCCCeEEEEe
Confidence 679999996 55554 69999999999987643 1333333 489999999999999987
Q ss_pred C---------CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe-ecCC
Q 001319 426 T---------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-EGHE 494 (1101)
Q Consensus 426 ~---------d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-~~h~ 494 (1101)
. ++.|++||+.+++.+... .+ ...+..++|||||+ .|+.+. |+.|++|| .+++..... .++.
T Consensus 79 ~~~~~~~~s~~~~i~~~d~~~g~~~~~~-~l---~~~~~~~~~SPDG~--~la~~~-~~~i~~~~~~~g~~~~l~~~~~~ 151 (719)
T 1z68_A 79 DYSKLWRYSYTATYYIYDLSNGEFVRGN-EL---PRPIQYLCWSPVGS--KLAYVY-QNNIYLKQRPGDPPFQITFNGRE 151 (719)
T ss_dssp EEEECSSSCEEEEEEEEETTTTEECCSS-CC---CSSBCCEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECCCCCBT
T ss_pred cCceeEEeecceEEEEEECCCCccccce-ec---CcccccceECCCCC--EEEEEE-CCeEEEEeCCCCCcEEEecCCCc
Confidence 6 789999999998763101 12 25688999999999 566665 78999999 666654322 2333
Q ss_pred cCe-----------------EEEecccCCCccEEEEeccCC----------------------------------eEEEE
Q 001319 495 APV-----------------YSICPHHKENIQFIFSTAIDG----------------------------------KIKAW 523 (1101)
Q Consensus 495 ~~v-----------------~~v~~~~~~~~~~l~s~~~d~----------------------------------~i~~w 523 (1101)
..| .+++|+| ||+.|++++.|. .|++|
T Consensus 152 ~~v~~g~~~~v~~ee~~~~~~~~~wSP--DG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~ 229 (719)
T 1z68_A 152 NKIFNGIPDWVYEEEMLATKYALWWSP--NGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFII 229 (719)
T ss_dssp TTEEESSCCHHHHHHTTCSSCCEEECT--TSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEE
T ss_pred CCeEcccccceeeeecccCcccEEECC--CCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEE
Confidence 222 4788877 778999887652 78899
Q ss_pred ecCCCCee--ee------ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEe----CCCCeeEEEe----cccCCcc
Q 001319 524 LYDTMGSR--VD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN----ESEGTIKRTY----AGFRKKS 587 (1101)
Q Consensus 524 d~~~~~~~--~~------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd----~~~~~~~~~~----~~~~~~~ 587 (1101)
|+.++... .. +..+...+..++||||++.+++.....+....|++|| ..+++....+ .++.. .
T Consensus 230 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~-~ 308 (719)
T 1z68_A 230 DTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTG-W 308 (719)
T ss_dssp ESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSS-C
T ss_pred ECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCc-e
Confidence 99877642 11 2346667899999999877776543233345799999 8888766555 24433 4
Q ss_pred eE-----EEEEeCCCCEEEE--EeCCC--cEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC-----CcE
Q 001319 588 NG-----VVQFDTTQNHFLA--VGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD-----NGF 653 (1101)
Q Consensus 588 v~-----~~~~~~~~~~l~~--~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i 653 (1101)
+. .++|+|||+.++. ...+| .|++||+.+++. ..+... ...+..+.++ +++.|+..+.+ +..
T Consensus 309 ~~~~~~~~~~~spdg~~l~~~~~~~~g~~~l~~~~~~~~~~-~~lt~~--~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~ 384 (719)
T 1z68_A 309 AGGFFVSTPVFSYDAISYYKIFSDKDGYKHIHYIKDTVENA-IQITSG--KWEAINIFRV-TQDSLFYSSNEFEEYPGRR 384 (719)
T ss_dssp SSSSSCCCCEECTTSSCEEEEEECTTSCEEEEEESSCSTTC-EECSCS--SSCEEEEEEE-CSSEEEEEESCGGGCTTCB
T ss_pred EccccCCccEECCCCCeEEEEEEccCCceEEEEEECCCCce-EecccC--ceEEEEEEEE-eCCEEEEEEecCCCCCceE
Confidence 44 6889999997655 33455 577778877663 333322 2246677777 88888777765 778
Q ss_pred EEEEccc
Q 001319 654 KILANAI 660 (1101)
Q Consensus 654 ~iwd~~~ 660 (1101)
++|.+..
T Consensus 385 ~l~~~~~ 391 (719)
T 1z68_A 385 NIYRISI 391 (719)
T ss_dssp EEEEEEC
T ss_pred EEEEEeC
Confidence 8888753
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.7e-18 Score=197.14 Aligned_cols=318 Identities=14% Similarity=0.099 Sum_probs=202.2
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
...+..+++++++..+++++.+| +++|+........... .....+...... .. ..+...|.+++|+|+|
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~~~~~~~~~----~~---~~~~~~v~~l~~spdg 104 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPG---DDPNKIVDKVQG----LL---VPMKFPIHHLALSCDN 104 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTT---CCTTCEEECCCC----EE---ECCSSCEEEEEECTTS
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccc---cCcccccccCcc----cc---ccCCCcccEEEEcCCC
Confidence 44678899999999999988887 8888754221100000 000000000000 00 1256789999999999
Q ss_pred CeEE----EEc-CCeEEEEECCCc--------e---EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 817 SYVM----SAT-GGKISLFNMMTF--------K---VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 817 ~~la----~~~-dg~i~vwd~~~~--------~---~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
++|+ +++ |+.|++||+.++ + ....+.+|...|.+++|+|+++.+|++++.||+|++||+.++..
T Consensus 105 ~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~ 184 (434)
T 2oit_A 105 LTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVK 184 (434)
T ss_dssp CEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEE
T ss_pred CEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcc
Confidence 9999 566 789999998765 2 24556678999999999994489999999999999999999987
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCC-CCCCCcceEEEcCCCCEEEEEe--CC
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAG-KTPTGDTRVQFNADQVRMLVVH--ET 957 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~--d~ 957 (1101)
+....+|...|.+++|+|+|++|++|+.||+|++||+. ++.......+.... .....+.++.|++++.++++.. ++
T Consensus 185 ~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg 263 (434)
T 2oit_A 185 VCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADG 263 (434)
T ss_dssp EEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTC
T ss_pred eeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCC
Confidence 77777899999999999999999999999999999998 43322221111100 1113788999999999887743 32
Q ss_pred ------eEEEEEcCCce-----eeeEeccC----CCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCC--ce-eEee
Q 001319 958 ------QLAIYDASKME-----RIRQWTPQ----DALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTL--RL-RCYI 1018 (1101)
Q Consensus 958 ------~i~v~d~~~~~-----~~~~~~~~----~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~--~~-~~~~ 1018 (1101)
.+++|++.+.+ ....+... .....+-..+.+-+|.+++++++ ..+.|.|...... .. ....
T Consensus 264 ~~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~~~~~~~~~~~~ 343 (434)
T 2oit_A 264 TLETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQSDQINWESWLL 343 (434)
T ss_dssp CSSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEECTTSSCEEEEEE
T ss_pred ccCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEecCCCCccEEEec
Confidence 38999997642 11221111 01122333344447777776655 4555666664331 11 1111
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecC--C------------CCEEEEEECCCeEEEEeCCC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPL--E------------PNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~--d------------~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
.........+-.......++++++.-. + --.|..-+.||.+..|.+-.
T Consensus 344 ~d~~ra~lP~~~~~~dt~piG~~~d~~~~~~v~~~~~~~~~p~P~l~~l~~~G~L~~~~~~~ 405 (434)
T 2oit_A 344 EDSSRAELPVTDKSDDSLPMGVVVDYTNQVEITISDEKTLPPAPVLMLLSTDGVLCPFYMIN 405 (434)
T ss_dssp CGGGCCBCCBCTTSCBCCEEEEEEECCCCCCEEEETTEEECCCCEEEEEETTSEEEEEEEEE
T ss_pred cccccccccCCCCCCCceeeEEEEEccCCceeecCccccCCCCCEEEEECCCCEEEEEEEEe
Confidence 111111111111234455666655321 1 13678888999999999866
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.83 E-value=9.3e-19 Score=199.25 Aligned_cols=259 Identities=12% Similarity=0.084 Sum_probs=174.9
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE-
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG- 422 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la- 422 (1101)
...+..+++++++. ++++|+.++ |+||+........... .+.. ............|...|.+++|+|||++||
T Consensus 36 ~~~~n~lavs~~~~-~l~~~~~dg-v~v~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~v~~l~~spdg~~lav 109 (434)
T 2oit_A 36 KERSSLLAVSNKYG-LVFAGGASG-LQIFPTKNLLIQNKPG---DDPN-KIVDKVQGLLVPMKFPIHHLALSCDNLTLSA 109 (434)
T ss_dssp CSCCBCEEEETTTT-EEEEEETTE-EEEEEHHHHCCCCCTT---CCTT-CEEECCCCEEECCSSCEEEEEECTTSCEEEE
T ss_pred CCCccEEEEecCCC-EEEEECCCE-EEEEEchHhhhhcccc---cCcc-cccccCccccccCCCcccEEEEcCCCCEEEE
Confidence 34689999999998 557787787 9998864321110000 0000 000000011223567899999999999999
Q ss_pred ---EEECCCeEEEEeecCC--------cccccceeeecccCcEEEEEEecC-CCceEEEEecCCceEEEEE-cCCceeEE
Q 001319 423 ---VAFTKHLIQLYSYAGS--------NDLRQHSQIDAHVGAVNDLAFAYP-NKLLCVVTCGDDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 423 ---s~~~d~~i~vwd~~~~--------~~~~~~~~l~~h~~~V~~l~~s~d-~~~~~l~s~~~d~~v~iwd-~~~~~~~~ 489 (1101)
+|+.|+.|+|||+.++ +.+.....+.+|...|.+++|+|+ +. +|++++.||+|++|| .++..+..
T Consensus 110 ~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~--~las~s~Dg~v~iwD~~~~~~~~~ 187 (434)
T 2oit_A 110 CMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPS--MVAVCLADGSIAVLQVTETVKVCA 187 (434)
T ss_dssp EEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTT--EEEEEETTSCEEEEEESSSEEEEE
T ss_pred EEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCC--EEEEEECCCeEEEEEcCCCcceee
Confidence 7888999999999875 222233456789999999999998 55 899999999999999 77777777
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC-------CCceEEEEEccCCCEEEEeecCC--
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSK-- 560 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~~-- 560 (1101)
..+|...|.+++|++ +|++|++|+.||+|++||.+ +.....+..+ ...+.+++|++++.++++.+...
T Consensus 188 ~~~~~~~v~~v~wsp--dg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~~dg~ 264 (434)
T 2oit_A 188 TLPSTVAVTSVCWSP--KGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAAADGT 264 (434)
T ss_dssp EECGGGCEEEEEECT--TSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEETTCC
T ss_pred ccCCCCceeEEEEcC--CCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEccCCCc
Confidence 778999999999988 56899999999999999988 4444433322 22789999999998887655321
Q ss_pred -CCCceEEEEeCCCCe-----eEEEec-------ccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEEC
Q 001319 561 -DGDSFLVEWNESEGT-----IKRTYA-------GFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDM 614 (1101)
Q Consensus 561 -~~~~~i~iwd~~~~~-----~~~~~~-------~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~ 614 (1101)
+....+++|++...+ ....+. +... ....+..-++.+.+++++ ..+.|.+...
T Consensus 265 ~~~~~~v~i~~l~~~~~~~~~~~~~~~~~~~~~~~~r~-~~~~~~~l~dw~l~~v~s~~s~dv~vl~~ 331 (434)
T 2oit_A 265 LETSPDVVMALLPKKEEKHPEIFVNFMEPCYGSCTERQ-HHYYLSYIEEWDLVLAASAASTEVSILAR 331 (434)
T ss_dssp SSSCCEEEEEECCCTTTCCCCEEEECCCSSCCCCSSSC-CCEEEEEEGGGTEEEEEETTCSBCEEEEE
T ss_pred cCCCCceEEEEeccCCCCCCcceEecccCCCCCCCCcC-cceeeehhccCCEEEEecCCCCceeEEEe
Confidence 112348999987642 112221 1111 122233446777776655 4444555553
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.6e-18 Score=192.76 Aligned_cols=268 Identities=14% Similarity=0.110 Sum_probs=185.6
Q ss_pred ccccCCCCccee--EeecCCCcEEEEEEecCCceEEEEEec--cCcEEEEecCCCceeccccceeecccccCcccccccc
Q 001319 327 TWSLDDLPRTVA--VSLHQGSTVISMDFHPSHQTLLLVGSS--NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF 402 (1101)
Q Consensus 327 ~~~~~~~~~~~~--~~~~h~~~V~~v~fspdg~~llasg~~--d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 402 (1101)
+|.++....... ....+...+..++|||||+ +++++.. ++.|.+|++.+++.... ..+
T Consensus 20 v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~~~~~-----------------~~~ 81 (347)
T 3hfq_A 20 QGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQTAHKL-----------------NTV 81 (347)
T ss_dssp EEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTEEEEE-----------------EEE
T ss_pred EEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCcEEEe-----------------eee
Confidence 666665544443 3455778899999999998 7666543 78999999977653220 113
Q ss_pred ccCCccEEEEEEccCCCEEEEEE-CCCeEEEEeecCCcccccceeeec---------ccCcEEEEEEecCCCceEEEEec
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDA---------HVGAVNDLAFAYPNKLLCVVTCG 472 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~---------h~~~V~~l~~s~d~~~~~l~s~~ 472 (1101)
..+...+..++|+|||++|++++ .++.|.+|++...........+.. +...+.+++|+|||+ ++++..
T Consensus 82 ~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~--l~v~~~ 159 (347)
T 3hfq_A 82 VAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNR--LAVIDL 159 (347)
T ss_dssp EEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSC--EEEEET
T ss_pred ecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCc--EEEEeC
Confidence 44677889999999999999888 689999999964322332222221 123488999999999 788888
Q ss_pred CCceEEEEE-c-CCcee--EEeecCC-cCeEEEecccCCCccEEEE-eccCCeEEEEecCC--CCee--eeccCCC----
Q 001319 473 DDKLIKVWE-L-SGRKL--FNFEGHE-APVYSICPHHKENIQFIFS-TAIDGKIKAWLYDT--MGSR--VDYDAPG---- 538 (1101)
Q Consensus 473 ~d~~v~iwd-~-~~~~~--~~~~~h~-~~v~~v~~~~~~~~~~l~s-~~~d~~i~~wd~~~--~~~~--~~~~~~~---- 538 (1101)
.++.|.+|| . +++.. ..+..+. ..+..++|+| ||+++++ ...++.|.+|+++. +... ..+....
T Consensus 160 ~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~sp--dg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~ 237 (347)
T 3hfq_A 160 GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSP--DGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYT 237 (347)
T ss_dssp TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCC
T ss_pred CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECC--CCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCC
Confidence 899999999 4 45433 2223222 3577899977 6675544 56789999999875 3221 1111111
Q ss_pred --CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC---CeeEEEecccCCcceEEEEEeCCCCEEEEEeC-CCcEEEE
Q 001319 539 --HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DSQIKFW 612 (1101)
Q Consensus 539 --~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg~i~iw 612 (1101)
..+..++|+|||++|+++.. +++.|.+|++.. .+.+..+..+.. .+..++|+|+|++|++++. ++.|.+|
T Consensus 238 ~~~~~~~i~~spdG~~l~v~~~---~~~~v~v~~~~~~g~~~~~~~~~~~~~-~~~~~~~spdg~~l~v~~~~~~~v~v~ 313 (347)
T 3hfq_A 238 AHNGAAAIRLSHDGHFLYVSNR---GYNTLAVFAVTADGHLTLIQQISTEGD-FPRDFDLDPTEAFVVVVNQNTDNATLY 313 (347)
T ss_dssp SCCEEEEEEECTTSCEEEEEEE---TTTEEEEEEECGGGCEEEEEEEECSSS-CCCEEEECTTSSEEEEEETTTTEEEEE
T ss_pred CCCcceeEEECCCCCEEEEEeC---CCCEEEEEEECCCCcEEEeEEEecCCC-CcCeEEECCCCCEEEEEEcCCCcEEEE
Confidence 35889999999998866543 478899999872 245555555433 5778999999999988875 5899999
Q ss_pred --ECCCCeee
Q 001319 613 --DMDNVNIL 620 (1101)
Q Consensus 613 --d~~~~~~~ 620 (1101)
|..++++.
T Consensus 314 ~~d~~tg~l~ 323 (347)
T 3hfq_A 314 ARDLTSGKLS 323 (347)
T ss_dssp EECTTTCCEE
T ss_pred EEeCCCCeEE
Confidence 55566554
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=6.3e-19 Score=217.26 Aligned_cols=331 Identities=9% Similarity=0.032 Sum_probs=215.5
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccC---cEEEEEEecCCCceEEEEecC---------CceEE
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG---AVNDLAFAYPNKLLCVVTCGD---------DKLIK 478 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~---~V~~l~~s~d~~~~~l~s~~~---------d~~v~ 478 (1101)
+++|+|||+++++ +.|++|++||+.+++... .+.+|.. .|.+++|||||+ .|++++. ++.|+
T Consensus 20 ~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~---~~~~~~~~~~~~~~~~~SpDg~--~la~~~~~~~~~~~s~~~~i~ 93 (719)
T 1z68_A 20 FPNWISGQEYLHQ-SADNNIVLYNIETGQSYT---ILSNRTMKSVNASNYGLSPDRQ--FVYLESDYSKLWRYSYTATYY 93 (719)
T ss_dssp CCEESSSSEEEEE-CTTSCEEEEESSSCCEEE---EECHHHHHTTTCSEEEECTTSS--EEEEEEEEEECSSSCEEEEEE
T ss_pred ccEECCCCeEEEE-cCCCCEEEEEcCCCcEEE---EEccccccccceeeEEECCCCC--eEEEEecCceeEEeecceEEE
Confidence 7899999976655 469999999999988654 3444433 489999999999 5666654 78999
Q ss_pred EEE-cCCcee--EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCce-------------
Q 001319 479 VWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWC------------- 541 (1101)
Q Consensus 479 iwd-~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v------------- 541 (1101)
+|| .+++.+ ..+ ...+..++|+| ||+.|+.+. ++.|++|++.++...... .++...+
T Consensus 94 ~~d~~~g~~~~~~~l---~~~~~~~~~SP--DG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~ 167 (719)
T 1z68_A 94 IYDLSNGEFVRGNEL---PRPIQYLCWSP--VGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEM 167 (719)
T ss_dssp EEETTTTEECCSSCC---CSSBCCEEECS--STTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHT
T ss_pred EEECCCCccccceec---CcccccceECC--CCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeec
Confidence 999 555542 333 35688899987 667888775 789999999887665432 2221112
Q ss_pred ----EEEEEccCCCEEEEeecCCC------------------------------CCceEEEEeCCCCeeE--EE------
Q 001319 542 ----TTMLYSADGSRLFSCGTSKD------------------------------GDSFLVEWNESEGTIK--RT------ 579 (1101)
Q Consensus 542 ----~~~~~s~d~~~l~~~~~~~~------------------------------~~~~i~iwd~~~~~~~--~~------ 579 (1101)
.+++|||||++|++++.+.. ....|++||+.+++.. ..
T Consensus 168 ~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~ 247 (719)
T 1z68_A 168 LATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAM 247 (719)
T ss_dssp TCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHH
T ss_pred ccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCcc
Confidence 48999999999999875321 1237899999988753 11
Q ss_pred ecccCCcceEEEEEeCCCCEEEEEeCC----CcEEEEE----CCCCeeeEee----ccCCCCCCCC-----eeEEecCCC
Q 001319 580 YAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWD----MDNVNILTST----DAEGGLPNLP-----RLRFSKEGN 642 (1101)
Q Consensus 580 ~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd----~~~~~~~~~~----~~~~~~~~v~-----~v~~s~~g~ 642 (1101)
+.++.. .+..++|+||++.+++.... ..|++|| ..+++....+ ..+ ...+. .+.|+|||+
T Consensus 248 ~~~~~~-~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~spdg~ 324 (719)
T 1z68_A 248 IASSDY-YFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESR--TGWAGGFFVSTPVFSYDAI 324 (719)
T ss_dssp HHTSCE-EEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECS--SSCSSSSSCCCCEECTTSS
T ss_pred CCCCcc-eEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccC--CceEccccCCccEECCCCC
Confidence 223333 67889999998766664322 3488999 8777765544 222 22455 789999999
Q ss_pred EEEE--EEcCCc--EEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 643 LLAV--TTADNG--FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 643 ~l~~--~~~d~~--i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
.++. ...++. |.+|++.++. ...+.
T Consensus 325 ~l~~~~~~~~g~~~l~~~~~~~~~--~~~lt------------------------------------------------- 353 (719)
T 1z68_A 325 SYYKIFSDKDGYKHIHYIKDTVEN--AIQIT------------------------------------------------- 353 (719)
T ss_dssp CEEEEEECTTSCEEEEEESSCSTT--CEECS-------------------------------------------------
T ss_pred eEEEEEEccCCceEEEEEECCCCc--eEecc-------------------------------------------------
Confidence 6655 334554 5555554431 11111
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecC-----CeEEEEEecCCCCCCCCCeeeeccccccccCCccc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-----GVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLL 793 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-----g~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 793 (1101)
.+...+..+.++ +++.++..+.+ +..++|.+....... +. ..
T Consensus 354 ----------------~~~~~v~~~~~~-d~~~i~~~~~~~~~~~~~~~l~~~~~~~g~~--~~--------------~~ 400 (719)
T 1z68_A 354 ----------------SGKWEAINIFRV-TQDSLFYSSNEFEEYPGRRNIYRISIGSYPP--SK--------------KC 400 (719)
T ss_dssp ----------------CSSSCEEEEEEE-CSSEEEEEESCGGGCTTCBEEEEEECSSSSC--CE--------------EE
T ss_pred ----------------cCceEEEEEEEE-eCCEEEEEEecCCCCCceEEEEEEeCCCCCC--Cc--------------ee
Confidence 123345556666 77777776654 888999875311000 00 00
Q ss_pred eeeccCCCCCCCCEeEEEecCCCCeEEEEc--C--CeEEEEECCCceEEEEee
Q 001319 794 MANDVAGVNLEEAVPCIALSKNDSYVMSAT--G--GKISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 794 ~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d--g~i~vwd~~~~~~~~~~~ 842 (1101)
+...+. ++...+..+.|+||+++++... . ..+.+||+.+++....+.
T Consensus 401 l~~~~~--~~~~~~~~~~~s~dg~~l~~~~s~~~~p~~~l~d~~~g~~~~~~~ 451 (719)
T 1z68_A 401 VTCHLR--KERCQYYTASFSDYAKYYALVCYGPGIPISTLHDGRTDQEIKILE 451 (719)
T ss_dssp SSTTTT--TTTBCBEEEEECGGGSSEEEEECCBSSCEEEEECSSSCCEEEEEE
T ss_pred ccCccC--CCCCceEEEEECCCCCEEEEEcCCCCCCeEEEEECCCCCEEEEee
Confidence 000011 1445677899999999887543 2 468999998888765554
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=7e-18 Score=207.52 Aligned_cols=381 Identities=9% Similarity=0.010 Sum_probs=241.2
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc--e--EEEEEeCCCCEEEEEeCC---------C
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS--N--GVVQFDTTQNHFLAVGED---------S 607 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~--v--~~~~~~~~~~~l~~~~~d---------g 607 (1101)
..++.|+|||++++++ ++.|++||+.+++....+.++.... + ..++|+|||++|+.++.+ +
T Consensus 19 ~~~~~w~~dg~~~~~~------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~ 92 (740)
T 4a5s_A 19 LYSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTA 92 (740)
T ss_dssp CCCEEECSSSEEEEEE------TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEE
T ss_pred ccccEECCCCcEEEEc------CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccce
Confidence 5588999999888874 6789999999999888888775422 2 337899999999998875 6
Q ss_pred cEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeee
Q 001319 608 QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKV 687 (1101)
Q Consensus 608 ~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 687 (1101)
.+++||+.+++... +..+ ...+..++|||||+.||.+. ++.|++|++.++....-...+....
T Consensus 93 ~~~~~d~~~~~~~~-l~~~--~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~------------- 155 (740)
T 4a5s_A 93 SYDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDI------------- 155 (740)
T ss_dssp EEEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTT-------------
T ss_pred EEEEEECCCCcEEE-cccC--CCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccc-------------
Confidence 67899999998654 3222 33688999999999999885 6899999987763211111110000
Q ss_pred ccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecC-CeEEEEEe
Q 001319 688 SASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSN-GVQKLWKW 766 (1101)
Q Consensus 688 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~d-g~v~~w~~ 766 (1101)
+..+...-.. . ..-......++|||||+.|+....| +.+.+|++
T Consensus 156 ----~~~g~~~~v~-----------------------------~--ee~~~~~~~~~wSpDg~~la~~~~d~~~v~~~~~ 200 (740)
T 4a5s_A 156 ----IYNGITDWVY-----------------------------E--EEVFSAYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (740)
T ss_dssp ----EEESBCCHHH-----------------------------H--HHTSSSSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred ----eecCcccccc-----------------------------c--chhcCCCcceEECCCCCEEEEEEEcccCCceEEE
Confidence 0000000000 0 0000222457899999999888765 44888876
Q ss_pred cCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCC---c---eEEEE
Q 001319 767 HRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMT---F---KVMTT 840 (1101)
Q Consensus 767 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~---~---~~~~~ 840 (1101)
...... . .+...+..+.+.+.|... ...+|++||+.+ + +....
T Consensus 201 ~~~~~~-------------------~---------~~~~~~~~~~yp~~G~~~---~~~~l~v~d~~~~~~~~~~~~~~l 249 (740)
T 4a5s_A 201 SFYSDE-------------------S---------LQYPKTVRVPYPKAGAVN---PTVKFFVVNTDSLSSVTNATSIQI 249 (740)
T ss_dssp EECCST-------------------T---------CSSCEEEEEECCBTTSCC---CEEEEEEEETTSCCSSSCCCEEEE
T ss_pred EeecCC-------------------C---------CCCCcceeecCCCCcCcC---CeeEEEEEECCCCCCCCcceEEEe
Confidence 421100 0 133456677777766431 123699999998 7 33332
Q ss_pred ee-----CCCCCeeEEEEecCCCCEEEEEeC----CCcEEEEEeecce----EEE--ee--ccCCCCee-----EEEEcC
Q 001319 841 FM-----SPPPASTFLAFHPQDNNIIAIGTE----DSTIHIYNVRVDE----VKS--KL--KGHQKRIT-----GLAFST 898 (1101)
Q Consensus 841 ~~-----~~~~~i~~l~~s~~~~~~la~g~~----dg~v~iwd~~~~~----~~~--~~--~~h~~~V~-----~l~~s~ 898 (1101)
.. +|...+..++|+| |+++++.... +..|++||+.+++ +.. .+ .+|...|. .++|+|
T Consensus 250 ~~~~~~~~~~~~~~~~~wsp-dg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fsp 328 (740)
T 4a5s_A 250 TAPASMLIGDHYLCDVTWAT-QERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTL 328 (740)
T ss_dssp CCCHHHHTSCEEEEEEEEEE-TTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECT
T ss_pred cCCccCCCCCeEEEEEEEeC-CCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcC
Confidence 22 2667799999999 8887665543 3379999999987 332 22 45665554 789999
Q ss_pred CCCEEE-EEeC-C--CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-C-------CeEEEEEcCC
Q 001319 899 SLNILV-SSGA-D--AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E-------TQLAIYDASK 966 (1101)
Q Consensus 899 d~~~l~-s~s~-D--g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d-------~~i~v~d~~~ 966 (1101)
||+.|+ ..+. + ..|.+||+.+++.. ++..+. ..+..+. .+|++.|+... . ..|...++..
T Consensus 329 DG~~l~~~~s~~~G~~~l~~~~~~~~~~~-----~lT~g~--~~v~~~~-~~d~~~i~f~~~~~~~~~~~~~ly~v~~~g 400 (740)
T 4a5s_A 329 DGNSFYKIISNEEGYRHICYFQIDKKDCT-----FITKGT--WEVIGIE-ALTSDYLYYISNEYKGMPGGRNLYKIQLID 400 (740)
T ss_dssp TSSEEEEEEECTTSCEEEEEEETTCSSCE-----ESCCSS--SCEEEEE-EECSSEEEEEESCGGGCTTCBEEEEEETTE
T ss_pred CCCEEEEEEEcCCCceEEEEEECCCCceE-----ecccCC--EEEEEEE-EEeCCEEEEEEecCCCCCceeEEEEEECCC
Confidence 999877 6653 3 35888898876532 222222 2344333 24477666533 2 2455556655
Q ss_pred ceeeeEeccC-CCCCCCEEEEEEccCCCEEEEEeCC---CcEEEEeCCCCceeEeeC
Q 001319 967 MERIRQWTPQ-DALSAPISCAVYSCNSQLVFATFCD---GNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 967 ~~~~~~~~~~-~~h~~~v~~v~~s~dg~~l~s~~~d---g~i~vwd~~~~~~~~~~~ 1019 (1101)
+.....+... ......+..+.|||||++++..... ..+.+++..+++....+.
T Consensus 401 ~~~~~~lt~~~~~~~~~~~~~~~S~dg~~~~~~~s~~~~p~~~l~~~~~~~~~~~l~ 457 (740)
T 4a5s_A 401 YTKVTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTLHSSVNDKGLRVLE 457 (740)
T ss_dssp EEEEEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEEEETTTTEEEEEEE
T ss_pred CCcceeeccccCCCCCceEEEEECCCCCEEEEEeCCCCCCEEEEEECCCCcEEEEec
Confidence 5443344321 1124678899999999987754433 468889988887655543
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.82 E-value=4.7e-18 Score=209.05 Aligned_cols=274 Identities=12% Similarity=0.099 Sum_probs=182.8
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC-----ccEEEEEEccCCCE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-----ISVSRVAWSPDGNY 420 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-----~~v~~~~~spdg~~ 420 (1101)
...+++|+|||+ +++++ |+.|++||+.+++... ++.+|. .....++|||||++
T Consensus 18 ~~~~~~w~~dg~-~~~~~--~~~i~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~~Spdg~~ 75 (740)
T 4a5s_A 18 KLYSLRWISDHE-YLYKQ--ENNILVFNAEYGNSSV-------------------FLENSTFDEFGHSINDYSISPDGQF 75 (740)
T ss_dssp CCCCEEECSSSE-EEEEE--TTEEEEEETTTCCEEE-------------------EECTTTTTTCCSCCCEEEECTTSSE
T ss_pred cccccEECCCCc-EEEEc--CCcEEEEECCCCceEE-------------------EEechhhhhhcccccceEECCCCCE
Confidence 466899999997 55765 8999999999987643 133333 23345899999999
Q ss_pred EEEEECC---------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE-E
Q 001319 421 VGVAFTK---------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF-N 489 (1101)
Q Consensus 421 las~~~d---------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~-~ 489 (1101)
||+++.+ +.+.+||+.+++... +..|.+.+...+|||||+ .|+.+. |+.|++|| .++...+ +
T Consensus 76 l~~~~~~~~~~r~~~~~~~~~~d~~~~~~~~----l~~~~~~~~~~~~SPdG~--~la~~~-~~~i~~~~~~~~~~~~lt 148 (740)
T 4a5s_A 76 ILLEYNYVKQWRHSYTASYDIYDLNKRQLIT----EERIPNNTQWVTWSPVGH--KLAYVW-NNDIYVKIEPNLPSYRIT 148 (740)
T ss_dssp EEEEEEEEECSSSCEEEEEEEEETTTTEECC----SSCCCTTEEEEEECSSTT--CEEEEE-TTEEEEESSTTSCCEECC
T ss_pred EEEEECCeeeEEEccceEEEEEECCCCcEEE----cccCCCcceeeEECCCCC--EEEEEE-CCeEEEEECCCCceEEEc
Confidence 9999876 566799999987543 567888999999999999 466654 78999999 5655432 1
Q ss_pred eecCCcCe-----------------EEEecccCCCccEEEEeccCCe-EEEEecCCCCeeeeccCCCCceEEEEEccCCC
Q 001319 490 FEGHEAPV-----------------YSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551 (1101)
Q Consensus 490 ~~~h~~~v-----------------~~v~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~ 551 (1101)
..++...+ ..+.|+| ||+.|+.++.|.+ +.+|++....... .+...+..+.+.+.|.
T Consensus 149 ~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSp--Dg~~la~~~~d~~~v~~~~~~~~~~~~---~~~~~~~~~~yp~~G~ 223 (740)
T 4a5s_A 149 WTGKEDIIYNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDES---LQYPKTVRVPYPKAGA 223 (740)
T ss_dssp SCCBTTTEEESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCSTT---CSSCEEEEEECCBTTS
T ss_pred CCCCccceecCcccccccchhcCCCcceEECC--CCCEEEEEEEcccCCceEEEEeecCCC---CCCCcceeecCCCCcC
Confidence 22333222 3477877 7788888876655 8888764221110 1233466777777764
Q ss_pred EEEEeecCCCCCceEEEEeCCC---Ce--eEEEecc-----cCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESE---GT--IKRTYAG-----FRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNV 617 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~---~~--~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~ 617 (1101)
. +....|++||+.+ ++ ....+.. .+...+..++|+|||+.++... .+..|++||+.++
T Consensus 224 ~--------~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg 295 (740)
T 4a5s_A 224 V--------NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDES 295 (740)
T ss_dssp C--------CCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETT
T ss_pred c--------CCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCC
Confidence 3 1244799999998 73 2223332 1233678899999998766643 2347999999988
Q ss_pred e----ee--EeeccCCCCCCC-----CeeEEecCCCEEE-EEEc-CC--cEEEEEcccc
Q 001319 618 N----IL--TSTDAEGGLPNL-----PRLRFSKEGNLLA-VTTA-DN--GFKILANAIG 661 (1101)
Q Consensus 618 ~----~~--~~~~~~~~~~~v-----~~v~~s~~g~~l~-~~~~-d~--~i~iwd~~~~ 661 (1101)
+ +. ..+....+...| ..++|+|||+.++ ..+. +| .|++|+..++
T Consensus 296 ~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G~~~l~~~~~~~~ 354 (740)
T 4a5s_A 296 SGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKK 354 (740)
T ss_dssp TTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCS
T ss_pred ccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCCceEEEEEECCCC
Confidence 7 22 111001112233 3789999999887 6653 33 5777776654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.7e-18 Score=194.48 Aligned_cols=297 Identities=11% Similarity=-0.007 Sum_probs=195.8
Q ss_pred eeEeecCCCcEEE-----EEEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCccccccccccCCccE
Q 001319 337 VAVSLHQGSTVIS-----MDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISV 409 (1101)
Q Consensus 337 ~~~~~~h~~~V~~-----v~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v 409 (1101)
..+...|...+.. .+|||||++|+.++..++ .|.+||+.+++... +..++...+
T Consensus 23 ~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~-------------------lt~~~~~~~ 83 (388)
T 3pe7_A 23 VTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ-------------------LTEGRGDNT 83 (388)
T ss_dssp EEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE-------------------CCCSSCBCS
T ss_pred eEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE-------------------eeeCCCCCc
Confidence 3344446666666 899999997655444367 48888988876543 244555566
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEE--EecCCCceEEEE-----------------
Q 001319 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLA--FAYPNKLLCVVT----------------- 470 (1101)
Q Consensus 410 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~--~s~d~~~~~l~s----------------- 470 (1101)
..++|||||++|+.++.++.|++||+.+++... .+..+...+.... +++|++ .++.
T Consensus 84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~---~~~~~~~~~~~~~~~~~~dg~--~l~~~~~~~~~~~~~~~~~~~ 158 (388)
T 3pe7_A 84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENV---VYQVPAEWVGYGTWVANSDCT--KLVGIEIRREDWVPLTDWKKF 158 (388)
T ss_dssp SSCEECTTSSEEEEEETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSS--EEEEEEEEGGGCCCCCSHHHH
T ss_pred cceEEcCCCCEEEEEeCCCeEEEEECCCCccee---eeechhhcccccceeECCCCC--eeccccccCcccccccccchh
Confidence 678899999999999999999999999987554 3344555554444 489998 4542
Q ss_pred -----ecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccC------CeEEEEecCCCCeeeeccCCC
Q 001319 471 -----CGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 471 -----~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
.+.+..|.+|| .+++ ...+..+...+..++|+|. ||+.|+.+..+ ..|.++|..............
T Consensus 159 ~~~~~~~~~~~l~~~d~~~g~-~~~l~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~ 236 (388)
T 3pe7_A 159 HEFYFTKPCCRLMRVDLKTGE-STVILQENQWLGHPIYRPY-DDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAE 236 (388)
T ss_dssp HHHGGGCCCEEEEEEETTTCC-EEEEEEESSCEEEEEEETT-EEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCT
T ss_pred hhhhccCCcceEEEEECCCCc-eEEeecCCccccccEECCC-CCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCC
Confidence 23457899999 5554 5555567777899999761 34677666543 367777776554433333222
Q ss_pred -CceEEEEEccCCCEEEEeecCCC-CCceEEEEeCCCCeeEE--EecccCC--cceEEEEEeCCCCEEEEE---------
Q 001319 539 -HWCTTMLYSADGSRLFSCGTSKD-GDSFLVEWNESEGTIKR--TYAGFRK--KSNGVVQFDTTQNHFLAV--------- 603 (1101)
Q Consensus 539 -~~v~~~~~s~d~~~l~~~~~~~~-~~~~i~iwd~~~~~~~~--~~~~~~~--~~v~~~~~~~~~~~l~~~--------- 603 (1101)
..+..++|+|||+.|+..+.... .+..|++||+.+++... .+.++.. ......+|+|||+.|+..
T Consensus 237 ~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 316 (388)
T 3pe7_A 237 GESCTHEFWVPDGSALVYVSYLKGSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKI 316 (388)
T ss_dssp TEEEEEEEECTTSSCEEEEEEETTCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------
T ss_pred CcccccceECCCCCEEEEEecCCCCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeecccccc
Confidence 35788999999998876654221 12359999999987533 3332100 001113699999988864
Q ss_pred eCCCcEEEEECCCCeeeEeeccCCCC--------CCCCeeEEecCCCEEEEEEc-CCcEEEEEcc
Q 001319 604 GEDSQIKFWDMDNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKILANA 659 (1101)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~ 659 (1101)
..+..|++||+.+++........... ..+..++|+|||+.|+.++. ++...+|.+.
T Consensus 317 ~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~spDg~~l~~~s~~~g~~~l~~~~ 381 (388)
T 3pe7_A 317 ENDPFLYVFNMKNGTQHRVARHDTSWKVFEGDRQVTHPHPSFTPDDKQILFTSDVHGKPALYLAT 381 (388)
T ss_dssp CCCCEEEEEETTTTEEEEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEE
T ss_pred CCCCEEEEEeccCCceEEeccccCcccccccccccCCCCccCCCCCCEEEEEecCCCceeEEEEE
Confidence 45678999999988764443322210 03678999999998887764 6766676554
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.82 E-value=9.4e-19 Score=209.62 Aligned_cols=235 Identities=13% Similarity=0.164 Sum_probs=177.4
Q ss_pred CccEEEEEEccCCCEEEEEEC-CCeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEecC---CceEEEE
Q 001319 406 PISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCGD---DKLIKVW 480 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~~---d~~v~iw 480 (1101)
..+|.+++|||||++||+++. ||+++||++++++..+ +..|. ..+..++|+|| + ++++++. +...++|
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~----lt~~~~~~~~~~~~spd-~--~l~~~~~~~g~~~~~l~ 93 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVK----LNREPINSVLDPHYGVG-R--VILVRDVSKGAEQHALF 93 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEE----CCSSCCSEECEECTTCS-E--EEEEEECSTTSCCEEEE
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEe----eecccccccccccCCCC-e--EEEEeccCCCCcceEEE
Confidence 558999999999999999887 9999999998776433 44555 68999999999 5 6776654 5556676
Q ss_pred E--c--CCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 481 E--L--SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 481 d--~--~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
. . .+... .+.... .+...+|++++++..+++++.++. .+||+.+++.......+. .+++|||||++++++
T Consensus 94 ~~~~~~~g~~~-~l~~~~-~~~~~~~s~dg~~~~~~s~~~~~~-~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~ 167 (582)
T 3o4h_A 94 KVNTSRPGEEQ-RLEAVK-PMRILSGVDTGEAVVFTGATEDRV-ALYALDGGGLRELARLPG---FGFVSDIRGDLIAGL 167 (582)
T ss_dssp EEETTSTTCCE-ECTTSC-SBEEEEEEECSSCEEEEEECSSCE-EEEEEETTEEEEEEEESS---CEEEEEEETTEEEEE
T ss_pred EEeccCCCccc-cccCCC-CceeeeeCCCCCeEEEEecCCCCc-eEEEccCCcEEEeecCCC---ceEEECCCCCEEEEE
Confidence 5 4 55554 443322 344667888766555666555554 499998876554443332 789999999999988
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC--cEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
+.+..+...|++||+.+++.. .+..+.. .+..++|+|||+.|+++..++ .|++||+.+++.. .+..+ ...+..
T Consensus 168 ~~~~~~~~~i~~~d~~~g~~~-~l~~~~~-~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~--~~~~~~ 242 (582)
T 3o4h_A 168 GFFGGGRVSLFTSNLSSGGLR-VFDSGEG-SFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELP--SKDFSS 242 (582)
T ss_dssp EEEETTEEEEEEEETTTCCCE-EECCSSC-EEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCS--CSHHHH
T ss_pred EEcCCCCeEEEEEcCCCCCce-EeecCCC-ccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCC--CcChhh
Confidence 764333478999999988865 5555554 678899999999999888888 8999999998877 44433 335667
Q ss_pred eE--------EecCCCEEEEEEcCCcEEEEEc
Q 001319 635 LR--------FSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 635 v~--------~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++ |+|||.++++++.++.+++|++
T Consensus 243 ~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 243 YRPTAITWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp HCCSEEEEEEECTTSCEEEEEEETTEEEEEET
T ss_pred hhhccccceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 77 9999999999999999999998
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=2.4e-18 Score=191.70 Aligned_cols=242 Identities=13% Similarity=0.101 Sum_probs=184.0
Q ss_pred EEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCC-CCeeEEEEecCCCCEE-EEEeCCCcEEEEEeecceEEEeec
Q 001319 809 CIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNII-AIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~l-a~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.++++++++++++++ ++.|++||+.+++.+..+..+. ..+..++|+| +++++ +++..++.|++||+.+++.+..+.
T Consensus 4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~-dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~ 82 (349)
T 1jmx_B 4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAP-DNRTAYVLNNHYGDIYGIDLDTCKNTFHAN 82 (349)
T ss_dssp CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECT-TSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECC-CCCEEEEEeCCCCcEEEEeCCCCcEEEEEE
Confidence 356788888888887 8999999999999988887543 2578999999 77755 555678999999999998887765
Q ss_pred cCC------CCeeEEEEcCCCCEEEEEeCC------------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC
Q 001319 886 GHQ------KRITGLAFSTSLNILVSSGAD------------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 886 ~h~------~~V~~l~~s~d~~~l~s~s~D------------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 947 (1101)
.+. ..+.+++|+|||++|++++.+ +.|.+||+.+++......... . +..+.+++|+||
T Consensus 83 ~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~--~--~~~~~~~~~s~d 158 (349)
T 1jmx_B 83 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFP--M--PRQVYLMRAADD 158 (349)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEE--C--CSSCCCEEECTT
T ss_pred cccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeecc--C--CCcccceeECCC
Confidence 332 237899999999999998865 899999999865443222211 1 135788999999
Q ss_pred CCEEEEEeCCeEEEEEcCCceeeeEeccCCC-------------------------------------------------
Q 001319 948 QVRMLVVHETQLAIYDASKMERIRQWTPQDA------------------------------------------------- 978 (1101)
Q Consensus 948 ~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~------------------------------------------------- 978 (1101)
|+ ++++ ++.|.+||..+++.+..+.....
T Consensus 159 g~-l~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 236 (349)
T 1jmx_B 159 GS-LYVA-GPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYL 236 (349)
T ss_dssp SC-EEEE-SSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEE
T ss_pred Cc-EEEc-cCcEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEE
Confidence 99 5554 44599999999888776654310
Q ss_pred ----------------CCCCEEEEEEcc-CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEE
Q 001319 979 ----------------LSAPISCAVYSC-NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1041 (1101)
Q Consensus 979 ----------------h~~~v~~v~~s~-dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~ 1041 (1101)
+...+..++|+| ||++++++ ++.|.+||+.+++.+..+.. .+ .+.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~-----------~~--~~~~~~ 301 (349)
T 1jmx_B 237 SVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANL-----------DH--TYYCVA 301 (349)
T ss_dssp EEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEEC-----------SS--CCCEEE
T ss_pred EEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcC-----------CC--CccceE
Confidence 012456778889 99999988 88999999999998777652 22 234799
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCCCCcccc
Q 001319 1042 AHPLEPNQFAIGLTDGSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1042 ~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~~~ 1073 (1101)
|+| ++.+|++++.++.|.+||+.+++....+
T Consensus 302 ~s~-dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 302 FDK-KGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp ECS-SSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred ECC-CCCEEEEecCCCeEEEEeccccceeeee
Confidence 999 6777777888999999999998843333
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.82 E-value=7.8e-17 Score=180.22 Aligned_cols=312 Identities=9% Similarity=0.082 Sum_probs=195.9
Q ss_pred cCCCEEEEeecCCCCCceEEEEeC--CCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC----CcEEEEECCC--Cee
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNE--SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDN--VNI 619 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~--~~~ 619 (1101)
+...++++++.....++.|++|++ .+++.......+ ......++|+|+|++|++++.+ +.|.+|++.. ++.
T Consensus 11 ~~~~~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~~~~~-~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~ 89 (361)
T 3scy_A 11 DSELTMLVGTYTSGNSKGIYTFRFNEETGESLPLSDAE-VANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTL 89 (361)
T ss_dssp GGEEEEEEEECCSSSCCEEEEEEEETTTCCEEEEEEEE-CSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEE
T ss_pred CCceEEEEEeccCCCCCCEEEEEEeCCCCCEEEeeccc-CCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcE
Confidence 344456666554444667888755 566554433322 3356679999999999998875 7999998765 443
Q ss_pred eEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCC
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 698 (1101)
...............+++ ++++|++++ .++.|.+|++..... +.....
T Consensus 90 ~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~-~~~~~~---------------------------- 138 (361)
T 3scy_A 90 HLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGA-LLPASD---------------------------- 138 (361)
T ss_dssp EEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSC-BCSCSE----------------------------
T ss_pred EEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCc-Ccccce----------------------------
Confidence 222221111123455666 888888776 578899999864311 100000
Q ss_pred CCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCee
Q 001319 699 ANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 778 (1101)
Q Consensus 699 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~ 778 (1101)
.+.+ .+ .+
T Consensus 139 -------------------------------------------~~~~--~g--------~~------------------- 146 (361)
T 3scy_A 139 -------------------------------------------VIEF--KG--------SG------------------- 146 (361)
T ss_dssp -------------------------------------------EEEC--CC--------CC-------------------
T ss_pred -------------------------------------------eEEc--cC--------CC-------------------
Confidence 0000 00 00
Q ss_pred eeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEEEECCCce-------E------EEEeeC
Q 001319 779 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFK-------V------MTTFMS 843 (1101)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~-------~------~~~~~~ 843 (1101)
. .....+...+.+++|+|||++++++. ++.|.+|++.... . ......
T Consensus 147 -------------~-----~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~ 208 (361)
T 3scy_A 147 -------------P-----DKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA 208 (361)
T ss_dssp -------------S-----CTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred -------------C-----CccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC
Confidence 0 00001334577899999999766654 6889999876433 1 111223
Q ss_pred CCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeecceE--EEee---ccCCCCeeEEEEcCCCCEEEEEeCC--CcEEEE
Q 001319 844 PPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEV--KSKL---KGHQKRITGLAFSTSLNILVSSGAD--AQLCVW 915 (1101)
Q Consensus 844 ~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~--~~~~---~~h~~~V~~l~~s~d~~~l~s~s~D--g~v~lw 915 (1101)
+...+..++|+| ++++|++++ .++.|.+|++.+++. +..+ ..+...+.+++|+|||++|+++..+ +.|.+|
T Consensus 209 ~~~~~~~~~~sp-dg~~l~v~~~~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~ 287 (361)
T 3scy_A 209 PGSGPRHLIFNS-DGKFAYLINEIGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIF 287 (361)
T ss_dssp TTCCEEEEEECT-TSSEEEEEETTTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEE
T ss_pred CCCCCeEEEEcC-CCCEEEEEcCCCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEE
Confidence 455688999999 888777776 689999999998754 2222 3344557899999999998766654 899999
Q ss_pred ECC--CCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEc--CCceeeeEeccCCCCCCCEEEEEEc
Q 001319 916 SID--TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDA--SKMERIRQWTPQDALSAPISCAVYS 989 (1101)
Q Consensus 916 d~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~--~~~~~~~~~~~~~~h~~~v~~v~~s 989 (1101)
++. +++......+.. + ..+..++|+|||++|+++. ++.|.+|++ .+++....... .+...+.|+.|.
T Consensus 288 ~~~~~~g~~~~~~~~~~--g---~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d~~~g~~~~~~~~--~~~~~p~~v~~~ 360 (361)
T 3scy_A 288 KVDETNGTLTKVGYQLT--G---IHPRNFIITPNGKYLLVACRDTNVIQIFERDQATGLLTDIKKD--IKVDKPVCLKFV 360 (361)
T ss_dssp EECTTTCCEEEEEEEEC--S---SCCCEEEECTTSCEEEEEETTTTEEEEEEECTTTCCEEECSCC--EECSSEEEEEEE
T ss_pred EEcCCCCcEEEeeEecC--C---CCCceEEECCCCCEEEEEECCCCCEEEEEEECCCCcEeeccee--eeCCCCeEEEEc
Confidence 996 444322222221 2 4678999999999988865 688999655 46665443222 125578899886
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-17 Score=183.14 Aligned_cols=271 Identities=14% Similarity=0.156 Sum_probs=183.4
Q ss_pred EEEEEe----ccCcEEEEecCC--CceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC----C
Q 001319 359 LLLVGS----SNGEITLWELAM--RDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK----H 428 (1101)
Q Consensus 359 llasg~----~d~~i~iwd~~~--~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d----~ 428 (1101)
.+.+|+ .++.|.+|+++. ++.... ... +...+..++|+|||++|++++.+ +
T Consensus 15 ~~~vg~y~~~~~~~i~~~~~d~~~g~~~~~-----------------~~~--~~~~p~~l~~spdg~~l~~~~~~~~~~~ 75 (361)
T 3scy_A 15 TMLVGTYTSGNSKGIYTFRFNEETGESLPL-----------------SDA--EVANPSYLIPSADGKFVYSVNEFSKDQA 75 (361)
T ss_dssp EEEEEECCSSSCCEEEEEEEETTTCCEEEE-----------------EEE--ECSCCCSEEECTTSSEEEEEECCSSTTC
T ss_pred EEEEEeccCCCCCCEEEEEEeCCCCCEEEe-----------------ecc--cCCCCceEEECCCCCEEEEEEccCCCCC
Confidence 345563 456899998753 443220 012 66778889999999999999886 7
Q ss_pred eEEEEeecCC-cccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe------ec--------
Q 001319 429 LIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF------EG-------- 492 (1101)
Q Consensus 429 ~i~vwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~------~~-------- 492 (1101)
.|.+|++... ..+........+......+++ +++. ++++...++.|.+|+ .....+..+ .+
T Consensus 76 ~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~-l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~ 152 (361)
T 3scy_A 76 AVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKN-IVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQ 152 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSE-EEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTC
T ss_pred cEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCE-EEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCcccc
Confidence 9999999863 223333344445667778888 7774 445555789999999 433322111 11
Q ss_pred CCcCeEEEecccCCCccEEEE-eccCCeEEEEecCCCCe-------------eeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 493 HEAPVYSICPHHKENIQFIFS-TAIDGKIKAWLYDTMGS-------------RVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 493 h~~~v~~v~~~~~~~~~~l~s-~~~d~~i~~wd~~~~~~-------------~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+...+.+++|+| +|+++++ ...++.|++|+++.... ..........+..++|+|||++++++..
T Consensus 153 ~~~~~~~~~~sp--dg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~ 230 (361)
T 3scy_A 153 TMPHLHCVRITP--DGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINE 230 (361)
T ss_dssp SSCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEET
T ss_pred CCCcceEEEECC--CCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcC
Confidence 122357789977 6675554 44589999999876542 1222334456789999999998887763
Q ss_pred CCCCCceEEEEeCCCCeeE--EEecccC--CcceEEEEEeCCCCEEEEEeC--CCcEEEEECC--CCe--eeEeeccCCC
Q 001319 559 SKDGDSFLVEWNESEGTIK--RTYAGFR--KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMD--NVN--ILTSTDAEGG 628 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~--~~~~~~~--~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~--~~~--~~~~~~~~~~ 628 (1101)
.++.|.+|++.+++.. ..+.... ......++|+|+|++|+++.. ++.|.+|++. +++ .+..+.. +
T Consensus 231 ---~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~-g- 305 (361)
T 3scy_A 231 ---IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLT-G- 305 (361)
T ss_dssp ---TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEEC-S-
T ss_pred ---CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecC-C-
Confidence 4788999999877652 3332221 123568999999999977665 4899999985 444 3334433 2
Q ss_pred CCCCCeeEEecCCCEEEEEE-cCCcEEEEEcc
Q 001319 629 LPNLPRLRFSKEGNLLAVTT-ADNGFKILANA 659 (1101)
Q Consensus 629 ~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~ 659 (1101)
..+..++|+|+|++|++++ .++.|.+|++.
T Consensus 306 -~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 306 -IHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp -SCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred -CCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 2578999999999999888 57899997654
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.8e-18 Score=187.54 Aligned_cols=293 Identities=8% Similarity=-0.017 Sum_probs=193.6
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeeeccCCC-CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC-
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR- 584 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~- 584 (1101)
++.++++++.++.|++||..+++....+..+. ..+..++|+|+|++++++.. .++.|.+||+.+++.+..+....
T Consensus 10 ~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~---~~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 10 GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEESCCS
T ss_pred CCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeC---CCCcEEEEeCCCCcEEEEEEcccc
Confidence 66789999999999999999887776665443 25789999999997766543 47889999999999887776432
Q ss_pred ----CcceEEEEEeCCCCEEEEEeCC------------CcEEEEECCCCeee---EeeccCCCCCCCCeeEEecCCCEEE
Q 001319 585 ----KKSNGVVQFDTTQNHFLAVGED------------SQIKFWDMDNVNIL---TSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 585 ----~~~v~~~~~~~~~~~l~~~~~d------------g~i~iwd~~~~~~~---~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
...+..++|+|+|+++++++.+ +.|.+||+.+++.. .....+ ..+.+++|+|+|+ ++
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~---~~~~~~~~s~dg~-l~ 162 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMP---RQVYLMRAADDGS-LY 162 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECC---SSCCCEEECTTSC-EE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCC---CcccceeECCCCc-EE
Confidence 2236678999999999998865 89999999885433 333322 2578999999999 65
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+++ +.|.+||..++. ....+....... + ..+.++...+ |.......
T Consensus 163 ~~~--~~i~~~d~~~~~-~~~~~~~~~~~~---~---~~~~~~~~~~------------------------~~~~~~~~- 208 (349)
T 1jmx_B 163 VAG--PDIYKMDVKTGK-YTVALPLRNWNR---K---GYSAPDVLYF------------------------WPHQSPRH- 208 (349)
T ss_dssp EES--SSEEEECTTTCC-EEEEECSTTCCC---T---TBCCCBCCCC------------------------CCCCCTTC-
T ss_pred Ecc--CcEEEEeCCCCc-eeccccccccCC---c---cccCccceee------------------------ecCCCcce-
Confidence 554 459999988763 222221110000 0 0000000000 00000000
Q ss_pred EEEEcCCCCCCcccEEEEEeecCcccE-----------EEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccce
Q 001319 726 RLVTMPESTDTSSKVVRLLYTNSAVGL-----------LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~~~~~s~~~~~l-----------~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 794 (1101)
.......+++++++... .....++.+++|++.
T Consensus 209 ----------~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------- 251 (349)
T 1jmx_B 209 ----------EFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFA--------------------------- 251 (349)
T ss_dssp ----------EEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEE---------------------------
T ss_pred ----------eEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccc---------------------------
Confidence 00012234444433211 112223344444321
Q ss_pred eeccCCCCCCCCEeEEEecC-CCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 795 ANDVAGVNLEEAVPCIALSK-NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~-dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
.....+.+++++| ||++++++ ++.|.+||+.+++.+..+.. ...+.+++|+| ++++|++++.++.|++|
T Consensus 252 -------~~~~~~~~~~~sp~dg~~l~~~-~~~v~~~d~~~~~~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~~~~v~v~ 321 (349)
T 1jmx_B 252 -------DLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVF 321 (349)
T ss_dssp -------ECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEE
T ss_pred -------cCCCcceeeEecCCCCCEEEEE-cCeEEEEECccCeEEEEEcC-CCCccceEECC-CCCEEEEecCCCeEEEE
Confidence 1445678999999 99999888 88999999999998887764 34578999999 88888888889999999
Q ss_pred EeecceEEEeeccC
Q 001319 874 NVRVDEVKSKLKGH 887 (1101)
Q Consensus 874 d~~~~~~~~~~~~h 887 (1101)
|+.+++.+..+...
T Consensus 322 d~~~~~~~~~~~~~ 335 (349)
T 1jmx_B 322 NPDTLEKVKNIKLP 335 (349)
T ss_dssp ETTTTEEEEEEECS
T ss_pred eccccceeeeeecC
Confidence 99999988877644
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.1e-17 Score=184.83 Aligned_cols=248 Identities=10% Similarity=0.095 Sum_probs=171.3
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECC-CceEEEEeeCC-CCCeeEEEEecCCCCE--EEEEe-------------CC
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMM-TFKVMTTFMSP-PPASTFLAFHPQDNNI--IAIGT-------------ED 867 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~-~~~~~~~~~~~-~~~i~~l~~s~~~~~~--la~g~-------------~d 867 (1101)
..+..++|+|||++|++++.+.|.+|++. +++........ .+.+.+++|+| ++++ +++++ .+
T Consensus 40 ~~~~~~a~spdg~~l~~~~~~~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~sp-dg~~l~~~~~~~~~~~~~~~~~~~~~ 118 (365)
T 1jof_A 40 EPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYKFA 118 (365)
T ss_dssp CCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred CCCcEEEECCCCCEEEEEccceEEEEEECCCCCEEEeeEeecCCCCccEEECC-CCCEEEEEEecCCcceeccceeecCC
Confidence 45778999999999888874499999997 77765443211 13466799999 8884 55553 68
Q ss_pred CcEEEEEee-cceEEEeec----cCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECC-CCccccceEEeecCCCCCCCcc
Q 001319 868 STIHIYNVR-VDEVKSKLK----GHQKRITGLAFSTSLNILVSSGA-DAQLCVWSID-TWEKRKSVTIHIPAGKTPTGDT 940 (1101)
Q Consensus 868 g~v~iwd~~-~~~~~~~~~----~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~-~~~~~~~~~~~~~~~~~~~~v~ 940 (1101)
|++.+|++. +++....+. .+...+.+++|+|||++|++++. ++.|++|++. +++......+.... ....+.
T Consensus 119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~--~g~~p~ 196 (365)
T 1jof_A 119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPD--PGDHPR 196 (365)
T ss_dssp CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSS--TTCCEE
T ss_pred ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCC--CCCCCC
Confidence 999999997 466544433 25567999999999998887654 6789999998 66543222222111 015688
Q ss_pred eEEEcCCCCEEEEEe--CCeEEEEEcC--Cceeee---EeccC----CCCCC------CEEEEE-EccCCCEEEEEeCCC
Q 001319 941 RVQFNADQVRMLVVH--ETQLAIYDAS--KMERIR---QWTPQ----DALSA------PISCAV-YSCNSQLVFATFCDG 1002 (1101)
Q Consensus 941 ~~~~s~d~~~l~~~~--d~~i~v~d~~--~~~~~~---~~~~~----~~h~~------~v~~v~-~s~dg~~l~s~~~dg 1002 (1101)
.++|+|||++++++. ++.|.+|+.+ +++... .+... .+|.. .+..++ |||||++|++++.+.
T Consensus 197 ~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~ 276 (365)
T 1jof_A 197 WVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRAN 276 (365)
T ss_dssp EEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEES
T ss_pred EeEECCCCCEEEEEECCCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCC
Confidence 999999999988864 6899999875 555421 22211 11122 588999 999999988766432
Q ss_pred ------cEEEEeCC-CCceeEe---eCCCCcCCCcccCCCCccceEEEEEecC--CCCEEEEEEC-CCeEEEEeCCCC
Q 001319 1003 ------NIGVFDAD-TLRLRCY---IAPSTYLSPSVLNGSQTVYPLVVAAHPL--EPNQFAIGLT-DGSVKVMEPSES 1067 (1101)
Q Consensus 1003 ------~i~vwd~~-~~~~~~~---~~~~~~~~~~~~~h~~~~~~~~l~~~p~--d~~~l~s~~~-Dg~v~iWd~~~~ 1067 (1101)
.|.+|++. ++++... +.. +.. .+..++|+|. |+++|++++. +++|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~~----------~~~--~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSPT----------PTS--GGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEEC----------SSC--CTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeeec----------CCC--CcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 89999996 6665431 211 111 1235788994 5788888876 489999998765
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3.7e-17 Score=182.77 Aligned_cols=246 Identities=9% Similarity=0.048 Sum_probs=171.9
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeec-CCcccccceeeecccCcEEEEEEecCCCceEEEEec------------
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYA-GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------------ 472 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~-~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~------------ 472 (1101)
...+..++|+|||++|++++.+ .|.+|++. +++..... ....+ +.+.+++|+|||+.+++++++
T Consensus 39 ~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~-~~~~~-g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~ 115 (365)
T 1jof_A 39 DEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEA-SHPIG-GHPRANDADTNTRAIFLLAAKQPPYAVYANPFY 115 (365)
T ss_dssp TCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEE-EEECC-SSGGGGCTTSCCEEEEEEECSSTTCCEEEEEES
T ss_pred CCCCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEee-EeecC-CCCccEEECCCCCEEEEEEecCCcceeccceee
Confidence 3467899999999999999888 89999997 77643311 11111 235668999999953355553
Q ss_pred -CCceEEEEE-c-CCceeEEee----cCCcCeEEEecccCCCccEEEEec-cCCeEEEEecC-CCCeee--ecc--CCCC
Q 001319 473 -DDKLIKVWE-L-SGRKLFNFE----GHEAPVYSICPHHKENIQFIFSTA-IDGKIKAWLYD-TMGSRV--DYD--APGH 539 (1101)
Q Consensus 473 -~d~~v~iwd-~-~~~~~~~~~----~h~~~v~~v~~~~~~~~~~l~s~~-~d~~i~~wd~~-~~~~~~--~~~--~~~~ 539 (1101)
.++++.+|+ . +|+....+. .+...+.+++|+| ||++++++. .++.|++|+++ +++... .+. .+..
T Consensus 116 ~~~g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~sp--dG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~ 193 (365)
T 1jof_A 116 KFAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDP--TETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGD 193 (365)
T ss_dssp SSCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECT--TSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTC
T ss_pred cCCceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECC--CCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCC
Confidence 689999999 3 566554443 2456789999987 667777665 46899999998 555432 222 2355
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCC--CCeeEE---EecccC----C-c-------ceEEEE-EeCCCCEEE
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKR---TYAGFR----K-K-------SNGVVQ-FDTTQNHFL 601 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~---~~~~~~----~-~-------~v~~~~-~~~~~~~l~ 601 (1101)
.+..++|+|||++++++.. .++.|.+|+.. +++... .+.... + . .+..++ |+|||++|+
T Consensus 194 ~p~~~~~spdg~~l~v~~~---~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~ 270 (365)
T 1jof_A 194 HPRWVAMHPTGNYLYALME---AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMF 270 (365)
T ss_dssp CEEEEEECTTSSEEEEEET---TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEE
T ss_pred CCCEeEECCCCCEEEEEEC---CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEE
Confidence 6899999999999988764 36788888754 565432 222111 1 1 367799 999999988
Q ss_pred EEeCC-C-----cEEEEECC-CCeeeEe---eccCCCCCCCCeeEEec---CCCEEEEEEcC-CcEEEEEcccc
Q 001319 602 AVGED-S-----QIKFWDMD-NVNILTS---TDAEGGLPNLPRLRFSK---EGNLLAVTTAD-NGFKILANAIG 661 (1101)
Q Consensus 602 ~~~~d-g-----~i~iwd~~-~~~~~~~---~~~~~~~~~v~~v~~s~---~g~~l~~~~~d-~~i~iwd~~~~ 661 (1101)
++..+ + .|.+|++. +++.... ..... ..+..++|+| +|++|++++.+ +.|.+|++...
T Consensus 271 v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~~~--~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 271 ASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTPT--SGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECSS--CCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EECCCCCCCCCCeEEEEEECCCCCEEEeeeeeecCC--CCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 76532 2 89999996 5665432 22222 2467899999 89999999864 89999998654
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.78 E-value=8.4e-18 Score=190.42 Aligned_cols=254 Identities=11% Similarity=0.012 Sum_probs=173.9
Q ss_pred cccCCccEEE-----EEEccCCCEEEEEEC-CC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC
Q 001319 402 FKDVPISVSR-----VAWSPDGNYVGVAFT-KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473 (1101)
Q Consensus 402 ~~~h~~~v~~-----~~~spdg~~las~~~-d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~ 473 (1101)
+..|...... .+|||||++||.++. ++ .|.+||+.+++... ...++...+..++|+|||+ .|+.++.
T Consensus 26 lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~---lt~~~~~~~~~~~~spdg~--~l~~~~~ 100 (388)
T 3pe7_A 26 LTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQ---LTEGRGDNTFGGFLSPDDD--ALFYVKD 100 (388)
T ss_dssp CSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEE---CCCSSCBCSSSCEECTTSS--EEEEEET
T ss_pred ecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEE---eeeCCCCCccceEEcCCCC--EEEEEeC
Confidence 5556655555 899999999999987 66 48888998887554 3345655666788999999 6888888
Q ss_pred CceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEe----------------------ccCCeEEEEecCCCCe
Q 001319 474 DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST----------------------AIDGKIKAWLYDTMGS 530 (1101)
Q Consensus 474 d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~----------------------~~d~~i~~wd~~~~~~ 530 (1101)
++.|++|| .+++....+..+...+....+..++++..++.. ..+..|.+||+.+++.
T Consensus 101 ~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~ 180 (388)
T 3pe7_A 101 GRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGES 180 (388)
T ss_dssp TTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCE
T ss_pred CCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCce
Confidence 89999999 777776666666665655555335577777642 2447899999988765
Q ss_pred eeeccCCCCceEEEEEcc-CCCEEEEeecCCC--CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeC-C
Q 001319 531 RVDYDAPGHWCTTMLYSA-DGSRLFSCGTSKD--GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGE-D 606 (1101)
Q Consensus 531 ~~~~~~~~~~v~~~~~s~-d~~~l~~~~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-d 606 (1101)
... ..+...+..++|+| ||+.|+.+..... ....|+++|...++............+...+|+|||+.|+..+. +
T Consensus 181 ~~l-~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (388)
T 3pe7_A 181 TVI-LQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWVPDGSALVYVSYLK 259 (388)
T ss_dssp EEE-EEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred EEe-ecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceECCCCCEEEEEecCC
Confidence 443 33455689999999 9999988764221 14478888887665443333222224667899999998866442 2
Q ss_pred ----CcEEEEECCCCeeeEeeccCCC--C-CCCCeeEEecCCCEEEEE---------EcCCcEEEEEcccc
Q 001319 607 ----SQIKFWDMDNVNILTSTDAEGG--L-PNLPRLRFSKEGNLLAVT---------TADNGFKILANAIG 661 (1101)
Q Consensus 607 ----g~i~iwd~~~~~~~~~~~~~~~--~-~~v~~v~~s~~g~~l~~~---------~~d~~i~iwd~~~~ 661 (1101)
+.|++||+.+++.......... . .....+.|+|||+.|+.. ..+..|++||+.++
T Consensus 260 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~ 330 (388)
T 3pe7_A 260 GSPDRFIYSADPETLENRQLTSMPACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNG 330 (388)
T ss_dssp TCCCEEEEEECTTTCCEEEEEEECCEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTT
T ss_pred CCCcceEEEEecCCCceEEEEcCCCceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCC
Confidence 2399999998875433322210 0 013445899999988864 44568999998765
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=4.9e-16 Score=172.40 Aligned_cols=312 Identities=9% Similarity=0.093 Sum_probs=208.4
Q ss_pred CccEEEEec------cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec------CCCCCceEEEEeCCCC
Q 001319 507 NIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT------SKDGDSFLVEWNESEG 574 (1101)
Q Consensus 507 ~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~------~~~~~~~i~iwd~~~~ 574 (1101)
+++++++.. .|+.|.+||..+++....+.....+ .++|+|||++++++.. .++.++.|.+||..++
T Consensus 14 ~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~ 91 (361)
T 2oiz_A 14 QENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL 91 (361)
T ss_dssp GGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC
T ss_pred CCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC
Confidence 445565543 4789999999888877666655444 8999999999998753 1123567999999999
Q ss_pred eeEEEecccC-----CcceEEEEEeCCCCEEEEEeC--CCcEEEEECCCCeeeEe-eccCCCCCCCCeeEEecCC-CEEE
Q 001319 575 TIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTS-TDAEGGLPNLPRLRFSKEG-NLLA 645 (1101)
Q Consensus 575 ~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~~g-~~l~ 645 (1101)
+.+.++.... ......++++|+|++|+++.. ++.|.+||+.+++.+.. +...+ ...+.+.|++ ..++
T Consensus 92 ~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~----~~~v~~~p~~~~~~~ 167 (361)
T 2oiz_A 92 TFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAG----CWSVIPQPNRPRSFM 167 (361)
T ss_dssp CEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTT----EEEEEECTTSSSEEE
T ss_pred cEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCC----cceeEEcCCCCeeEE
Confidence 9888876431 123556899999999999863 68999999999998887 65432 1235667765 6778
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+.+.||.+.+|+............. ...+.+.
T Consensus 168 ~~~~dg~~~~v~~~~~g~~~~~~~~-----------~~~~~~~------------------------------------- 199 (361)
T 2oiz_A 168 TICGDGGLLTINLGEDGKVASQSRS-----------KQMFSVK------------------------------------- 199 (361)
T ss_dssp EEETTSSEEEEEECTTSSEEEEEEC-----------CCCSCTT-------------------------------------
T ss_pred EECCCCcEEEEEECCCCcEeeeccc-----------cceEcCC-------------------------------------
Confidence 8889999999987542121100000 0000000
Q ss_pred EEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCC
Q 001319 726 RLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEE 805 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 805 (1101)
... ..+.+++++..++..+.++.+.++++....... ...|............ ...
T Consensus 200 -----------~~~-~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~---------~~~~~~~~~~~~~~~~----~p~ 254 (361)
T 2oiz_A 200 -----------DDP-IFIAPALDKDKAHFVSYYGNVYSADFSGDEVKV---------DGPWSLLNDEDKAKNW----VPG 254 (361)
T ss_dssp -----------TSC-BCSCCEECSSEEEEEBTTSEEEEEECSSSSCEE---------EEEEESCCHHHHHTTC----EEC
T ss_pred -----------CCc-eEEEecccCCEEEEEeCCCeEEEEEecCCCcee---------cccccccCcccccccc----ccC
Confidence 000 112234555556666667788888764321100 0001111100000000 001
Q ss_pred CEeEEEecCCCCeEEEEc------------CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 806 AVPCIALSKNDSYVMSAT------------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~------------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
....++|+||++.+.++. .+.|.+||+.+++.+.++..+. +.+++|+| ++++|++++. ++|.+|
T Consensus 255 g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~--p~~ia~sp-dg~~l~v~n~-~~v~v~ 330 (361)
T 2oiz_A 255 GYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD--ALSMTIDQ-QRNLMLTLDG-GNVNVY 330 (361)
T ss_dssp CSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT--CCEEEEET-TTTEEEEECS-SCEEEE
T ss_pred CeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC--eeEEEECC-CCCEEEEeCC-CeEEEE
Confidence 112368999988766542 2479999999999999998876 99999999 8889988887 999999
Q ss_pred Eeecc--eEEEeeccCCCCeeEEEEcCCCC
Q 001319 874 NVRVD--EVKSKLKGHQKRITGLAFSTSLN 901 (1101)
Q Consensus 874 d~~~~--~~~~~~~~h~~~V~~l~~s~d~~ 901 (1101)
|..++ +.+..+..+......++++|+|+
T Consensus 331 D~~t~~l~~~~~i~~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 331 DISQPEPKLLRTIEGAAEASLQVQFHPVGG 360 (361)
T ss_dssp ECSSSSCEEEEEETTSCSSEEEEEECCCSC
T ss_pred ECCCCcceeeEEeccCCCCcEEEEecCCCC
Confidence 99999 99999877878889999999986
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.77 E-value=1.8e-16 Score=175.85 Aligned_cols=218 Identities=13% Similarity=0.103 Sum_probs=156.9
Q ss_pred EeEEEecCCCCeEEEEc---CCeEEEEECCCceEEEE-eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-ceEE
Q 001319 807 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVK 881 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~-~~~~ 881 (1101)
...++++|||++|+++. ++.|.+||+.+++.+.. +... ....+.+.|.+...+++.+.||.+.+|++.. ++..
T Consensus 110 p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~--~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~ 187 (361)
T 2oiz_A 110 DGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAA--GCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVA 187 (361)
T ss_dssp GGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGT--TEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEE
T ss_pred cceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCC--CcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEe
Confidence 45689999999988874 46899999999998887 6532 2233567774557888899999999999875 5544
Q ss_pred E------eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeec------CCCCCCCcceEEEcCCCC
Q 001319 882 S------KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 882 ~------~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~ 949 (1101)
. .+..+..++ .+.+++++..++..+.++.|.++|+.............. .+..+.....++|+||+.
T Consensus 188 ~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~ 266 (361)
T 2oiz_A 188 SQSRSKQMFSVKDDPI-FIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASG 266 (361)
T ss_dssp EEEECCCCSCTTTSCB-CSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTT
T ss_pred eeccccceEcCCCCce-EEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCC
Confidence 1 222333332 345577888888888899999999976543221111110 011112334589999988
Q ss_pred EEEEEe------------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC--cee
Q 001319 950 RMLVVH------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL--RLR 1015 (1101)
Q Consensus 950 ~l~~~~------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~--~~~ 1015 (1101)
.+.+.. .+.|.+||+.+++.+..+..+ . +..++|+|||++|++++. +.|.|||..++ +.+
T Consensus 267 ~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~---~--p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~ 340 (361)
T 2oiz_A 267 RMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGR---D--ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLL 340 (361)
T ss_dssp EEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECT---T--CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEE
T ss_pred eEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecC---C--eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceee
Confidence 888742 248999999999999998874 3 899999999999998887 99999999999 888
Q ss_pred EeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 1016 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
.++.. + ...+..++++|+
T Consensus 341 ~~i~~----------~--G~~P~~~~~~p~ 358 (361)
T 2oiz_A 341 RTIEG----------A--AEASLQVQFHPV 358 (361)
T ss_dssp EEETT----------S--CSSEEEEEECCC
T ss_pred EEecc----------C--CCCcEEEEecCC
Confidence 88642 1 234567899994
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.2e-17 Score=183.83 Aligned_cols=282 Identities=10% Similarity=-0.022 Sum_probs=183.2
Q ss_pred EEEEEEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 347 VISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
+.+++|||||++++++...++ .|.+||+.+++... +..++......+.|||||++|+.+
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~-------------------l~~~~~~~~~~~~~spdg~~l~~~ 98 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQ-------------------LTEGKGDNTFGGFISTDERAFFYV 98 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEE-------------------CCCSSCBCTTTCEECTTSSEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEE-------------------eecCCCCccccceECCCCCEEEEE
Confidence 778899999997655544433 68888988776432 112222223347899999999999
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEE-------------------EEEecCCCceEEEEe-----cCCceEEEE
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND-------------------LAFAYPNKLLCVVTC-----GDDKLIKVW 480 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~-------------------l~~s~d~~~~~l~s~-----~~d~~v~iw 480 (1101)
+.++.|++||+.+++... ....+...... ++|+|+++. ++.+ ..+..|.+|
T Consensus 99 ~~~~~l~~~d~~~~~~~~---~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~--~~~~~~~~~~~~~~l~~~ 173 (396)
T 3c5m_A 99 KNELNLMKVDLETLEEQV---IYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSW--EKFAEFYHTNPTCRLIKV 173 (396)
T ss_dssp ETTTEEEEEETTTCCEEE---EEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSH--HHHHHHHHTCCCEEEEEE
T ss_pred EcCCcEEEEECCCCCcEE---EEecccccCCCCCEEEeccCCccccccccccccCCCCcc--eeeeeeccCCCcceEEEE
Confidence 999999999999886543 22233332222 356777774 3332 467789999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccC------CeEEEEecCCCCeeeeccCC-CCceEEEEEccCCCE
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAP-GHWCTTMLYSADGSR 552 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~-~~~v~~~~~s~d~~~ 552 (1101)
| .+++.. .+..+...+..+.|+|. ++..|+..+.+ ..|.+||+............ ...+..++|+|||++
T Consensus 174 d~~~g~~~-~~~~~~~~~~~~~~sp~-dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~ 251 (396)
T 3c5m_A 174 DIETGELE-VIHQDTAWLGHPIYRPF-DDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSA 251 (396)
T ss_dssp ETTTCCEE-EEEEESSCEEEEEEETT-EEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSC
T ss_pred ECCCCcEE-eeccCCcccccceECCC-CCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCE
Confidence 9 555544 44456677889999773 34555554433 36888888665433333321 235788999999998
Q ss_pred EEEeecCC-CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC-CCCEEEEEe----------------CCCcEEEEEC
Q 001319 553 LFSCGTSK-DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-TQNHFLAVG----------------EDSQIKFWDM 614 (1101)
Q Consensus 553 l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~~----------------~dg~i~iwd~ 614 (1101)
|+..+... ...+.|++||+.+++........ ... +.|+| +|+.+++++ .++.|++||+
T Consensus 252 l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~---~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~ 327 (396)
T 3c5m_A 252 MAYVSYFKGQTDRVIYKANPETLENEEVMVMP---PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNT 327 (396)
T ss_dssp EEEEEEETTTCCEEEEEECTTTCCEEEEEECC---SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEET
T ss_pred EEEEecCCCCccceEEEEECCCCCeEEeeeCC---CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEec
Confidence 88775421 11245999999988765443221 123 88999 999888754 3478999999
Q ss_pred CCCeeeEeeccCCCC--------CCCCeeEEecCCCEEEEEEc-CCcEEEEEc
Q 001319 615 DNVNILTSTDAEGGL--------PNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~--------~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~ 658 (1101)
.+++........... ..+..++|+|+|+.|+.++. ++...+|.+
T Consensus 328 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~ 380 (396)
T 3c5m_A 328 KAKSAQKLCKHSTSWDVLDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIA 380 (396)
T ss_dssp TTTBCCEEEECCCCCCCBTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEE
T ss_pred ccCceEEccCCCCccccccccccCCCCCceEccCCCeEEEEecCCCCceEEEE
Confidence 887754332221100 02467899999999887775 455555544
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.74 E-value=9.4e-17 Score=182.35 Aligned_cols=319 Identities=8% Similarity=-0.015 Sum_probs=205.7
Q ss_pred EEEeCCCCeeEEEecccCCc----ceEEEEEeCCCCEEEEEeCC---CcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 567 VEWNESEGTIKRTYAGFRKK----SNGVVQFDTTQNHFLAVGED---SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 567 ~iwd~~~~~~~~~~~~~~~~----~v~~~~~~~~~~~l~~~~~d---g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
..+|..++..+..+..+... .+..++|+|+|++|+..... ..|++||+.+++......... .....+.|+|
T Consensus 13 ~~~d~~~g~~~~~l~~~~~~~~~~~~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~~~~~l~~~~~--~~~~~~~~sp 90 (396)
T 3c5m_A 13 TFVDSDTQVKVTRLTPTDIICHRNYFYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQQAVQLTEGKG--DNTFGGFIST 90 (396)
T ss_dssp EEECTTTCCEEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTTEEEECCCSSC--BCTTTCEECT
T ss_pred eeecCCCCcceEEEecCCCCccceeeecCcCCCCCCEEEEEEecCCCceEEEEECCCCcEEEeecCCC--CccccceECC
Confidence 34578888877777654331 14567899999998876543 478899998887655433222 1234488999
Q ss_pred CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEE
Q 001319 640 EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEI 719 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~ 719 (1101)
||+.|+.++.++.|++|++.++.. ......
T Consensus 91 dg~~l~~~~~~~~l~~~d~~~~~~-~~~~~~------------------------------------------------- 120 (396)
T 3c5m_A 91 DERAFFYVKNELNLMKVDLETLEE-QVIYTV------------------------------------------------- 120 (396)
T ss_dssp TSSEEEEEETTTEEEEEETTTCCE-EEEEEC-------------------------------------------------
T ss_pred CCCEEEEEEcCCcEEEEECCCCCc-EEEEec-------------------------------------------------
Confidence 999999999999999999876521 110000
Q ss_pred EeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccC
Q 001319 720 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 799 (1101)
Q Consensus 720 ~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 799 (1101)
+.. ++++|+.++....++...+|.
T Consensus 121 ----------------~~~------~~~~g~~l~~~~~~~~~~~~~---------------------------------- 144 (396)
T 3c5m_A 121 ----------------DEE------WKGYGTWVANSDCTKLVGIEI---------------------------------- 144 (396)
T ss_dssp ----------------CTT------EEEEEEEEECTTSSEEEEEEE----------------------------------
T ss_pred ----------------ccc------cCCCCCEEEeccCCccccccc----------------------------------
Confidence 000 445555555554444333332
Q ss_pred CCCCCCCEeEEEecCCCCeEEEE------cCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC------
Q 001319 800 GVNLEEAVPCIALSKNDSYVMSA------TGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED------ 867 (1101)
Q Consensus 800 ~~~~~~~v~~~~~s~dg~~la~~------~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d------ 867 (1101)
..++++||++.++.. .+..|++||+.+++..... .+...+..+.|+|.++..|+..+.+
T Consensus 145 --------~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~-~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~ 215 (396)
T 3c5m_A 145 --------LKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIH-QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVD 215 (396)
T ss_dssp --------EGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEE-EESSCEEEEEEETTEEEEEEEEECSCSSSCS
T ss_pred --------cccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeec-cCCcccccceECCCCCCEEEEEecCCCCCCC
Confidence 113467888877654 2457999999988776555 3566789999999446656655543
Q ss_pred CcEEEEEeecceEEEeeccC-CCCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCccccceEEeecCCCCCCCcce
Q 001319 868 STIHIYNVRVDEVKSKLKGH-QKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTR 941 (1101)
Q Consensus 868 g~v~iwd~~~~~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~ 941 (1101)
..|++|++.+++........ ...+..++|+|||++|+.++.+ +.|++||+.+++.... .... ...
T Consensus 216 ~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l---~~~~-----~~~- 286 (396)
T 3c5m_A 216 ARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV---MVMP-----PCS- 286 (396)
T ss_dssp CCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE---EECC-----SEE-
T ss_pred ceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccceEEEEECCCCCeEEe---eeCC-----CCC-
Confidence 36888888766543333321 2358889999999988877554 4499999988764321 1111 122
Q ss_pred EEEcC-CCCEEEEEe-----------------CCeEEEEEcCCceeeeEeccCCCCCC----------CEEEEEEccCCC
Q 001319 942 VQFNA-DQVRMLVVH-----------------ETQLAIYDASKMERIRQWTPQDALSA----------PISCAVYSCNSQ 993 (1101)
Q Consensus 942 ~~~s~-d~~~l~~~~-----------------d~~i~v~d~~~~~~~~~~~~~~~h~~----------~v~~v~~s~dg~ 993 (1101)
+.|+| ||++++++. +..|.+||+.+++... +..+. .. .+..++|+|||+
T Consensus 287 ~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~--~~~~~~~~~~~~~~~~~~~s~dg~ 363 (396)
T 3c5m_A 287 HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQK-LCKHS--TSWDVLDGDRQITHPHPSFTPNDD 363 (396)
T ss_dssp EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCE-EEECC--CCCCCBTTBSSTTCCCCEECTTSS
T ss_pred CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEE-ccCCC--CccccccccccCCCCCceEccCCC
Confidence 89999 999888742 3689999998877543 33221 11 256688999999
Q ss_pred EEEEEeC-CCcEEEE--eCCCCce
Q 001319 994 LVFATFC-DGNIGVF--DADTLRL 1014 (1101)
Q Consensus 994 ~l~s~~~-dg~i~vw--d~~~~~~ 1014 (1101)
+|+.++. ++...+| ++.++..
T Consensus 364 ~l~~~s~~~~~~~l~~~~~~~~~~ 387 (396)
T 3c5m_A 364 GVLFTSDFEGVPAIYIADVPESYK 387 (396)
T ss_dssp EEEEEECTTSSCEEEEEECCTTCC
T ss_pred eEEEEecCCCCceEEEEEEccccc
Confidence 8887664 5554554 5555443
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.73 E-value=8.9e-16 Score=187.18 Aligned_cols=250 Identities=10% Similarity=-0.021 Sum_probs=177.0
Q ss_pred cccccCCccEEEEEEccCCCEEEEE--ECCCeEEEEeecCCcccccceeeecccCcEE---------EEEEe--cCCCce
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVA--FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVN---------DLAFA--YPNKLL 466 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~--~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~---------~l~~s--~d~~~~ 466 (1101)
..+.+|...|..++|++++.+++.. +.++...||....+...+ .+..|...+. ...|+ |||+.+
T Consensus 17 ~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~l~~~~~~~~~~~~~~~~~~~~~~~SPDg~~~ 93 (662)
T 3azo_A 17 ALVASRSGRPACVGAVGDEVWWVAPRPAEAGRATLVRRRADGAEE---SALPAPWNVRNRVFEYSGFPWAGVPRPAGGPL 93 (662)
T ss_dssp HHHHHTCSCCEEEEEETTEEEEEEEETTTTTEEEEEEECTTSCEE---ESSCTTCCBCCCGGGTCCCCEEEECCSSSSCE
T ss_pred HHHhhcCCccceeEEcCCeEEEEecCcccCCcEEEEEECCCCCcc---eeCCCCccccccccccCCccceeeeecCCCeE
Confidence 3477899999999999887777777 558899999975444333 4556766666 66676 999941
Q ss_pred EEEEe-cCCceEEEEEcC--C-ceeEEeec-----CCcCeEEEecccCCCccEEEEeccC----------CeEEEEecCC
Q 001319 467 CVVTC-GDDKLIKVWELS--G-RKLFNFEG-----HEAPVYSICPHHKENIQFIFSTAID----------GKIKAWLYDT 527 (1101)
Q Consensus 467 ~l~s~-~~d~~v~iwd~~--~-~~~~~~~~-----h~~~v~~v~~~~~~~~~~l~s~~~d----------~~i~~wd~~~ 527 (1101)
|+.+ ..+..|.+|+.. + .....+.. |...+..++|+| ||+.|++++.+ ..|++||+.+
T Consensus 94 -la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~sp--Dg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~ 170 (662)
T 3azo_A 94 -LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLP--ERGEVWCMAEEFTGEGPSDVRRFLAAVPLDG 170 (662)
T ss_dssp -EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEET--TTTEEEEEEEEECSSSTTCEEEEEEEEETTS
T ss_pred -EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECC--CCCEEEEEEecccCCCCCCceeEEEEEECCC
Confidence 4433 345667777755 3 55566666 667788999987 67889888877 5899999987
Q ss_pred ------CCeeeecc-CCCCceEEEEEccCCCEEEEeecCCC----CCceEEEEeCC-CC---eeEEEecccCCcceEEEE
Q 001319 528 ------MGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNES-EG---TIKRTYAGFRKKSNGVVQ 592 (1101)
Q Consensus 528 ------~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~-~~---~~~~~~~~~~~~~v~~~~ 592 (1101)
+.. ..+. .+...+..++|||||++|+.++.+.. ....|++||+. ++ +......++.. .+..++
T Consensus 171 ~~~~~~~~~-~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~-~~~~~~ 248 (662)
T 3azo_A 171 SAAADRSAV-RELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEE-AIAQAE 248 (662)
T ss_dssp TTTTCGGGS-EESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTB-CEEEEE
T ss_pred CccccCCce-eEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCc-eEcceE
Confidence 443 3444 45567888999999999998775321 13589999999 57 44444443333 688899
Q ss_pred EeCCCCEEEEEeCCC--cEEEEECCCCeeeEeeccCCCC------CCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 593 FDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTDAEGGL------PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 593 ~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~~~~~~------~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
|+|||+.++++..++ .|++||..+++.......+... ..+..++|+|+++++++++. +.+++|.+
T Consensus 249 ~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 249 WAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp ECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred ECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 999999777777788 6777777677655444332211 01467888888888888888 88888854
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=7.5e-14 Score=162.34 Aligned_cols=274 Identities=13% Similarity=0.080 Sum_probs=195.6
Q ss_pred ceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeec
Q 001319 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYA 436 (1101)
Q Consensus 357 ~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~ 436 (1101)
++++++...++.|.++|..+++.+.. +. ....+..++|||||+++++++.|+.|.+||+.
T Consensus 167 ~~~~V~~~~~~~V~viD~~t~~v~~~-------------------i~-~g~~p~~v~~SpDGr~lyv~~~dg~V~viD~~ 226 (567)
T 1qks_A 167 NLFSVTLRDAGQIALIDGSTYEIKTV-------------------LD-TGYAVHISRLSASGRYLFVIGRDGKVNMIDLW 226 (567)
T ss_dssp GEEEEEETTTTEEEEEETTTCCEEEE-------------------EE-CSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred ceEEEEeCCCCeEEEEECCCCeEEEE-------------------Ee-CCCCccceEECCCCCEEEEEcCCCeEEEEECC
Confidence 34677888899999999999887652 11 23356799999999999999999999999996
Q ss_pred --CCcccccceeeecccCcEEEEEEe----cCCCceEEEEecCCceEEEEE-cCCceeEEeecC----------Cc-CeE
Q 001319 437 --GSNDLRQHSQIDAHVGAVNDLAFA----YPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH----------EA-PVY 498 (1101)
Q Consensus 437 --~~~~~~~~~~l~~h~~~V~~l~~s----~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h----------~~-~v~ 498 (1101)
+++.+. ++... .....++|+ |||++ ++++...+++|.|+| .+.+.+..+... .. .+.
T Consensus 227 ~~t~~~v~---~i~~G-~~P~~ia~s~~~~pDGk~-l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva 301 (567)
T 1qks_A 227 MKEPTTVA---EIKIG-SEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVA 301 (567)
T ss_dssp SSSCCEEE---EEECC-SEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEE
T ss_pred CCCCcEeE---EEecC-CCCceeEEccccCCCCCE-EEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceE
Confidence 665554 34332 246799999 69995 455566679999999 888888766421 12 567
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeee-ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
.+..++.. ..+++....+|.|.++|+........ ..........+.|+|+|++++++.. +++.|.++|..+++.+
T Consensus 302 ~i~~s~~~-~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~pdgr~~~va~~---~sn~V~ViD~~t~kl~ 377 (567)
T 1qks_A 302 AILASHYR-PEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAAN---ARNKLVVIDTKEGKLV 377 (567)
T ss_dssp EEEECSSS-SEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEG---GGTEEEEEETTTTEEE
T ss_pred EEEEcCCC-CEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceECCCCCEEEEEeC---CCCeEEEEECCCCcEE
Confidence 77776643 35677777889999999876543221 1123345678899999999988764 4778999999999988
Q ss_pred EEecc-cCCc-ceEEE-EEeCCCCEEEEEe--CCCcEEEEECCC-------CeeeEeeccCCCCCCCCeeEEecCCCEEE
Q 001319 578 RTYAG-FRKK-SNGVV-QFDTTQNHFLAVG--EDSQIKFWDMDN-------VNILTSTDAEGGLPNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 578 ~~~~~-~~~~-~v~~~-~~~~~~~~l~~~~--~dg~i~iwd~~~-------~~~~~~~~~~~~~~~v~~v~~s~~g~~l~ 645 (1101)
..+.. .... .-... .++|++..+++.+ .++.|.++|..+ .+.+..+...+. .-..+..+|+++++.
T Consensus 378 ~~i~vgg~~Phpg~g~~~~~p~~g~v~~t~~~g~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~--g~~~i~~~p~~~~l~ 455 (567)
T 1qks_A 378 AIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGHPDNAWKILDSFPALGG--GSLFIKTHPNSQYLY 455 (567)
T ss_dssp EEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTCTTTBTSEEEEEECSCS--CCCCEECCTTCSEEE
T ss_pred EEEeccCcCCCCccceeeECCCCCcEEEeCCCCCCeEEEecCCCCCCccccCEEEEEEecCCC--CCEEEEeCCCCCeEE
Confidence 77764 2211 10112 2688765555443 568999999987 567777765432 225578899999999
Q ss_pred EEEc-------CCcEEEEEcccc
Q 001319 646 VTTA-------DNGFKILANAIG 661 (1101)
Q Consensus 646 ~~~~-------d~~i~iwd~~~~ 661 (1101)
+... .+.|.++|+.+.
T Consensus 456 v~~~~~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 456 VDATLNPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp EECTTCSSHHHHTCEEEEEGGGC
T ss_pred EecCCCCCcccCceEEEEECCcc
Confidence 8763 358888887654
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.3e-13 Score=160.20 Aligned_cols=331 Identities=14% Similarity=0.064 Sum_probs=226.1
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC--CCeeEEEecc
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES--EGTIKRTYAG 582 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~--~~~~~~~~~~ 582 (1101)
++.+.++++...+++|.++|..+.+....+... ..+..+.|+|||+++++++. ++.|.+||+. +++.+.++..
T Consensus 164 d~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~----dg~V~viD~~~~t~~~v~~i~~ 238 (567)
T 1qks_A 164 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGR----DGKVNMIDLWMKEPTTVAEIKI 238 (567)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECS-SCEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCCEEEEEEC
T ss_pred CCCceEEEEeCCCCeEEEEECCCCeEEEEEeCC-CCccceEECCCCCEEEEEcC----CCeEEEEECCCCCCcEeEEEec
Confidence 334567778888999999999998887766543 34679999999999998874 7899999996 8888877765
Q ss_pred cCCcceEEEEEe----CCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCC---------CCCCCeeEEecCCCEEEEE-
Q 001319 583 FRKKSNGVVQFD----TTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGG---------LPNLPRLRFSKEGNLLAVT- 647 (1101)
Q Consensus 583 ~~~~~v~~~~~~----~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~---------~~~v~~v~~s~~g~~l~~~- 647 (1101)
.. ....++|+ |+|++++++. .++.|.++|..+.+.+..+...+. ...+..+..++++..+++.
T Consensus 239 G~--~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~ 316 (567)
T 1qks_A 239 GS--EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV 316 (567)
T ss_dssp CS--EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE
T ss_pred CC--CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe
Confidence 33 35679999 6999998876 569999999999988887754321 1133445555544333322
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
..+|.|.++|..+..
T Consensus 317 ~~~g~v~~vd~~~~~----------------------------------------------------------------- 331 (567)
T 1qks_A 317 KETGKILLVDYTDLN----------------------------------------------------------------- 331 (567)
T ss_dssp TTTTEEEEEETTCSS-----------------------------------------------------------------
T ss_pred cCCCeEEEEecCCCc-----------------------------------------------------------------
Confidence 233445544433210
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCE
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 807 (1101)
.+++..+ ......
T Consensus 332 --------------------------------~~~v~~i-----------------------------------~~~~~~ 344 (567)
T 1qks_A 332 --------------------------------NLKTTEI-----------------------------------SAERFL 344 (567)
T ss_dssp --------------------------------EEEEEEE-----------------------------------ECCSSE
T ss_pred --------------------------------cceeeee-----------------------------------eccccc
Confidence 0000000 022335
Q ss_pred eEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeC-----CCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEeec--
Q 001319 808 PCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS-----PPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVRV-- 877 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-----~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~-- 877 (1101)
..+.|+|||++++++. +++|.++|+.+++.+..+.. |.+.-..+ ++|+.+.+++++. .+++|.++|..+
T Consensus 345 ~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~~-~~p~~g~v~~t~~~g~~~Vsvid~~~~~ 423 (567)
T 1qks_A 345 HDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANF-VHPTFGPVWATSHMGDDSVALIGTDPEG 423 (567)
T ss_dssp EEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCTTT
T ss_pred cCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEEeccCcCCCCccceee-ECCCCCcEEEeCCCCCCeEEEecCCCCC
Confidence 5788999999887765 68899999999998877654 32222222 5773355555554 468999999987
Q ss_pred -----ceEEEeeccCCCCeeEEEEcCCCCEEEEEeC-------CCcEEEEECCCCcc---ccc-eEEeec----CCCCCC
Q 001319 878 -----DEVKSKLKGHQKRITGLAFSTSLNILVSSGA-------DAQLCVWSIDTWEK---RKS-VTIHIP----AGKTPT 937 (1101)
Q Consensus 878 -----~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~-------Dg~v~lwd~~~~~~---~~~-~~~~~~----~~~~~~ 937 (1101)
.+.+.++......-..+..+|++++|.+... ..+|.++|+.+.+. ... ..+... .+....
T Consensus 424 ~~~~~~kvv~~i~~~g~g~~~i~~~p~~~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 503 (567)
T 1qks_A 424 HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEAEISGSVAVFDIKAMTGDGSDPEFKTLPIAEWAGITEGQP 503 (567)
T ss_dssp CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSHHHHTCEEEEEGGGCCCSSSCCCEEEECHHHHHTCCSSCC
T ss_pred CccccCEEEEEEecCCCCCEEEEeCCCCCeEEEecCCCCCcccCceEEEEECCcccccccCCCcEEeccccccccCCCCc
Confidence 5677777765444456889999999888663 35899999988621 111 122110 011125
Q ss_pred CcceEEEcCCCCEEEEE------eCCeEEEEEcCCceeeeEecc
Q 001319 938 GDTRVQFNADQVRMLVV------HETQLAIYDASKMERIRQWTP 975 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~------~d~~i~v~d~~~~~~~~~~~~ 975 (1101)
.+..+.|+++|+.+.++ .++.|.|+|..+++.+..+..
T Consensus 504 ~~~~~~~~~~G~~~~~s~~~~~~~~~~i~v~D~~t~~~~~~i~~ 547 (567)
T 1qks_A 504 RVVQGEFNKDGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKD 547 (567)
T ss_dssp EEEEEEECTTSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECC
T ss_pred ceEeeeECCCCCEEEEEeecCCCCCCcEEEEECCCceEEEEeCC
Confidence 68899999999998875 268999999999999888774
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.7e-15 Score=184.72 Aligned_cols=287 Identities=11% Similarity=0.023 Sum_probs=188.3
Q ss_pred eecCCCcEEEEEEecCCceEEEEE--eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEE-------
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVG--SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVS------- 410 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg--~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~------- 410 (1101)
..+|...|..++|++++- +++++ +.++...||....+.... .+..|...+.
T Consensus 19 ~~~~~~~~~~~~~s~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-------------------~l~~~~~~~~~~~~~~~ 78 (662)
T 3azo_A 19 VASRSGRPACVGAVGDEV-WWVAPRPAEAGRATLVRRRADGAEE-------------------SALPAPWNVRNRVFEYS 78 (662)
T ss_dssp HHHTCSCCEEEEEETTEE-EEEEEETTTTTEEEEEEECTTSCEE-------------------ESSCTTCCBCCCGGGTC
T ss_pred HhhcCCccceeEEcCCeE-EEEecCcccCCcEEEEEECCCCCcc-------------------eeCCCCccccccccccC
Confidence 345888999999998864 34555 457889999964433222 1334444444
Q ss_pred --EEEEc--cCCCE-EEEEEC-CCeEEEEeec--C-Ccccccceeeec-----ccCcEEEEEEecCCCceEEEEecCC--
Q 001319 411 --RVAWS--PDGNY-VGVAFT-KHLIQLYSYA--G-SNDLRQHSQIDA-----HVGAVNDLAFAYPNKLLCVVTCGDD-- 474 (1101)
Q Consensus 411 --~~~~s--pdg~~-las~~~-d~~i~vwd~~--~-~~~~~~~~~l~~-----h~~~V~~l~~s~d~~~~~l~s~~~d-- 474 (1101)
..+|+ |||++ ||.++. +..|.+|++. + ++ .. .+.. |...+.+++|+|||+ .|++++.|
T Consensus 79 ~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~-~~---~l~~~~~~~~~~~~~~~~~spDg~--~l~~~~~~~~ 152 (662)
T 3azo_A 79 GFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAV-PR---PLTPVSAVGGGLRWADPVLLPERG--EVWCMAEEFT 152 (662)
T ss_dssp CCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCC-CE---ECSCCCCSTTCEEEEEEEEETTTT--EEEEEEEEEC
T ss_pred CccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCC-CE---eccCCccCCCCccccCcEECCCCC--EEEEEEeccc
Confidence 55565 99999 887654 4566667665 3 43 33 3444 677899999999999 67766666
Q ss_pred --------ceEEEEEcCC------ceeEEee-cCCcCeEEEecccCCCccEEEEeccC--------CeEEEEecC-CC--
Q 001319 475 --------KLIKVWELSG------RKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYD-TM-- 528 (1101)
Q Consensus 475 --------~~v~iwd~~~------~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d--------~~i~~wd~~-~~-- 528 (1101)
..|++||..+ .....+. .+...+..++|+| ||++|+.++.+ ..|++||++ ++
T Consensus 153 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~Sp--DG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~ 230 (662)
T 3azo_A 153 GEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSP--DGRQAVWLAWDHPRMPWEGTELKTARVTEDGRF 230 (662)
T ss_dssp SSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECT--TSSEEEEEEECTTCCTTTCEEEEEEEECTTSCE
T ss_pred CCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECC--CCCEEEEEECCCCCCCCCCcEEEEEEECCCCcc
Confidence 5899999544 4556666 6667788888877 77888877755 379999998 45
Q ss_pred -CeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCc-------ceEEEEEeCCCCEE
Q 001319 529 -GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK-------SNGVVQFDTTQNHF 600 (1101)
Q Consensus 529 -~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~-------~v~~~~~~~~~~~l 600 (1101)
........+...+..++|+|||++++++.. ++...|++||..+++.......+... .+..++|+|++..+
T Consensus 231 ~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~~~~~~~ 308 (662)
T 3azo_A 231 ADTRTLLGGPEEAIAQAEWAPDGSLIVATDR--TGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPLANGLIA 308 (662)
T ss_dssp EEEEEEEEETTBCEEEEEECTTSCEEEEECT--TSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEECTTSCEE
T ss_pred cccEEeCCCCCceEcceEECCCCeEEEEECC--CCCeEEEEEECCCCceeecccccccccCccccccCceEeEeCCCEEE
Confidence 333333334567899999999996555542 23347888888777765544433221 04568899999999
Q ss_pred EEEeCCCcEEEE--ECCCCeeeEeeccCCCCCCCCeeEEecCCCEE--EEEEcCCc--EEEEEcccc
Q 001319 601 LAVGEDSQIKFW--DMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL--AVTTADNG--FKILANAIG 661 (1101)
Q Consensus 601 ~~~~~dg~i~iw--d~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l--~~~~~d~~--i~iwd~~~~ 661 (1101)
+++.. +.+++| |..+++ +..+..+. ..+..+ +++++..+ ++++.+.. |.+||+.++
T Consensus 309 ~~~~~-~~~~l~~~d~~~~~-~~~l~~~~--~~~~~~-~s~~~~~~~~~~~~~~~~~~i~~~d~~~g 370 (662)
T 3azo_A 309 VVHGK-GAAVLGILDPESGE-LVDAAGPW--TEWAAT-LTVSGTRAVGVAASPRTAYEVVELDTVTG 370 (662)
T ss_dssp EEEBS-SSCEEEEEETTTTE-EEECCSSC--CEEEEE-EEEETTEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEEEc-CccEEEEEECCCCc-EEEecCCC--CeEEEE-EecCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 99988 999999 665565 45554432 245555 14555443 33444444 445555454
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=8.9e-15 Score=160.52 Aligned_cols=245 Identities=14% Similarity=0.110 Sum_probs=182.4
Q ss_pred CcEEEEEEecCCceEEEEEecc------------------------CcEEEEecCCCceeccccceeecccccCcccccc
Q 001319 345 STVISMDFHPSHQTLLLVGSSN------------------------GEITLWELAMRDRLVSKPFKIWDMAACSLPFQAS 400 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d------------------------~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~ 400 (1101)
+.|.+|+++|+|+ ++++...+ +.|.+||..+++.+..
T Consensus 24 ~~v~~va~d~~G~-l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~------------------ 84 (329)
T 3fvz_A 24 GQVSGVALDSKNN-LVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQS------------------ 84 (329)
T ss_dssp SCEEEEEECTTCC-EEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEE------------------
T ss_pred CCceEEEECCCCC-EEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEec------------------
Confidence 5799999999998 66776666 3689999887776431
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCc-ccccceee---------ecccCcEEEEEEec-CCCceEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN-DLRQHSQI---------DAHVGAVNDLAFAY-PNKLLCVV 469 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~-~~~~~~~l---------~~h~~~V~~l~~s~-d~~~~~l~ 469 (1101)
.-.++-.....++++|+|+++++...++.|++||..+.. .+. .+ .++......++|+| ++. +++
T Consensus 85 ~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~---~~~~~~~~g~~~~~~~~P~~ia~~~~~g~--lyv 159 (329)
T 3fvz_A 85 SGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLL---ILGRSMQPGSDQNHFCQPTDVAVEPSTGA--VFV 159 (329)
T ss_dssp ECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSSCCSE---EESBTTBCCCSTTCCSSEEEEEECTTTCC--EEE
T ss_pred cCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEE---EecccCCCCCCccccCCCcEEEEeCCCCe--EEE
Confidence 122345678999999999988888889999999986542 222 22 24455789999999 676 677
Q ss_pred Eec-CCceEEEEEcCCceeEEeecC----------CcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc--C
Q 001319 470 TCG-DDKLIKVWELSGRKLFNFEGH----------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD--A 536 (1101)
Q Consensus 470 s~~-~d~~v~iwd~~~~~~~~~~~h----------~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~--~ 536 (1101)
+.+ .++.|++||.+|+.+..+... ......+++.++ .+.++++...++.|++|+.++++....+. .
T Consensus 160 ~d~~~~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~-~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~ 238 (329)
T 3fvz_A 160 SDGYCNSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPH-LDQLCVADRENGRIQCFKTDTKEFVREIKHAS 238 (329)
T ss_dssp EECSSCCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETT-TTEEEEEETTTTEEEEEETTTCCEEEEECCTT
T ss_pred EeCCCCCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECC-CCEEEEEECCCCEEEEEECCCCcEEEEEeccc
Confidence 775 689999999888888777432 234788999763 15788888889999999998777766653 3
Q ss_pred CCCceEEEEEccCCCEEEEeec---CCCCCceEEEEeCCCCeeEEEec---ccCCcceEEEEEeCCCCEEEEEeCCCcEE
Q 001319 537 PGHWCTTMLYSADGSRLFSCGT---SKDGDSFLVEWNESEGTIKRTYA---GFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~---~~~~~~~i~iwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 610 (1101)
....+..++++| +..+...+. .......|.+||..+++.+..+. ++.. ....++++|+|..+++...++.|+
T Consensus 239 ~~~~~~~~~~~p-g~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~-~p~~ia~~~dG~lyvad~~~~~I~ 316 (329)
T 3fvz_A 239 FGRNVFAISYIP-GFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFD-MPHDIVASEDGTVYIGDAHTNTVW 316 (329)
T ss_dssp TTTCEEEEEEET-TEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCS-SEEEEEECTTSEEEEEESSSCCEE
T ss_pred cCCCcceeeecC-CEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccC-CeeEEEECCCCCEEEEECCCCEEE
Confidence 455788999999 444433321 01235589999999999998884 3333 578899999997777778899999
Q ss_pred EEECCC
Q 001319 611 FWDMDN 616 (1101)
Q Consensus 611 iwd~~~ 616 (1101)
+|++..
T Consensus 317 ~~~~~~ 322 (329)
T 3fvz_A 317 KFTLTE 322 (329)
T ss_dssp EEEEEE
T ss_pred EEeCCc
Confidence 999753
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=4.5e-14 Score=151.81 Aligned_cols=245 Identities=12% Similarity=0.134 Sum_probs=177.4
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE-ccCCCEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW-SPDGNYV 421 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~-spdg~~l 421 (1101)
+-..+.+++++|+|+ ++++...++.|.+||.. ++.+.... . .....+|...+.++++ .++|+++
T Consensus 28 ~~~~p~~v~~~~~g~-l~v~~~~~~~i~~~d~~-g~~~~~~~-----~--------~~~~~~~~~~p~~i~~~~~~g~l~ 92 (286)
T 1q7f_A 28 QFTEPSGVAVNAQND-IIVADTNNHRIQIFDKE-GRFKFQFG-----E--------CGKRDSQLLYPNRVAVVRNSGDII 92 (286)
T ss_dssp CBSCEEEEEECTTCC-EEEEEGGGTEEEEECTT-SCEEEEEC-----C--------BSSSTTCBSSEEEEEEETTTTEEE
T ss_pred ccCCCceEEECCCCC-EEEEECCCCEEEEECCC-CcEEEEec-----c--------cCCCcccccCceEEEEEcCCCeEE
Confidence 445799999999997 66777788999999987 44332100 0 0001235567899999 4777776
Q ss_pred EEEEC-CCeEEEEeecCCcccccceeee-cccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee--cCCcCe
Q 001319 422 GVAFT-KHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEAPV 497 (1101)
Q Consensus 422 as~~~-d~~i~vwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~h~~~v 497 (1101)
++... ++.|.+|| .+++.+. .+. .+...+.+++++++|+ ++++...++.|.+||.+++.+..+. ++...+
T Consensus 93 v~~~~~~~~i~~~d-~~g~~~~---~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~p 166 (286)
T 1q7f_A 93 VTERSPTHQIQIYN-QYGQFVR---KFGATILQHPRGVTVDNKGR--IIVVECKVMRVIIFDQNGNVLHKFGCSKHLEFP 166 (286)
T ss_dssp EEECGGGCEEEEEC-TTSCEEE---EECTTTCSCEEEEEECTTSC--EEEEETTTTEEEEECTTSCEEEEEECTTTCSSE
T ss_pred EEcCCCCCEEEEEC-CCCcEEE---EecCccCCCceEEEEeCCCC--EEEEECCCCEEEEEcCCCCEEEEeCCCCccCCc
Confidence 66643 88999999 5555443 232 3445789999999998 7888888899999997788777764 345568
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC--CCceEEEEEccCCCEEEEeecCCCCCc-eEEEEeCCCC
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDS-FLVEWNESEG 574 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~~-~i~iwd~~~~ 574 (1101)
.++++.+ +|.++++...++.|++||.. ++....+... ...+..++++++|+++++... ++ .|.+||. ++
T Consensus 167 ~~i~~~~--~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~----~~~~i~~~~~-~g 238 (286)
T 1q7f_A 167 NGVVVND--KQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNH----NNFNLTIFTQ-DG 238 (286)
T ss_dssp EEEEECS--SSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECS----SSCEEEEECT-TS
T ss_pred EEEEECC--CCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCC----CCEEEEEECC-CC
Confidence 8999876 56777887889999999974 3444444433 256889999999988877653 54 8999995 56
Q ss_pred eeEEEecccCC-cceEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001319 575 TIKRTYAGFRK-KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 575 ~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1101)
+.+..+..+.. ..+..++++|+|+.+++ +.++.|++|+....
T Consensus 239 ~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 239 QLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp CEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEEcccc
Confidence 66666655433 23667999999976665 67999999997653
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=1.4e-10 Score=143.71 Aligned_cols=585 Identities=11% Similarity=0.066 Sum_probs=338.5
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...|++|.-.++|. |. .|+.+| +..||-. . |+.+..... .. ..-....|.++...++|.+.+
T Consensus 42 ~n~v~~I~qD~~G~-lW-igT~~G-L~ryDG~---~-----f~~~~~~~~----~~--~~l~~n~I~~i~~d~~g~lWi- 103 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MW-FATYDG-VNKYDGY---A-----FTVYQHNED----DP--NSIANDISRIVKTDSQGRVWI- 103 (795)
T ss_dssp SSCEEEEEECTTSC-EE-EEETTE-EEEECSS---C-----EEEECCCTT----CT--TSCSCSCEEEEEECTTSCEEE-
T ss_pred cceeEEEEEcCCCC-EE-EeecCc-CcccCCC---c-----eEEEeCCCC----CC--CcccccceeEEEECCCCCEEE-
Confidence 35899999999996 43 455665 4556632 1 111111000 00 001245799999999887554
Q ss_pred EECCCeEEEEeecCCcccccceeeecccC----cEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeec-C-CcC
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVG----AVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG-H-EAP 496 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~----~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~-h-~~~ 496 (1101)
|+.+| +..||..+++... +..... .|.++...++|. +.+ ++. +.+..|| .+++. ..+.. + ...
T Consensus 104 gT~~G-l~~yd~~~~~f~~----~~~~~~~~~~~i~~i~~d~~g~--lwi-~t~-~gl~~~~~~~~~~-~~~~~~~~~~~ 173 (795)
T 4a2l_A 104 GTRDG-LSRYDEEKDIFQN----FFYEKNGKHLQVNGIEEISPEQ--LLI-STP-EGLIMFDIKESKF-IDDSFSTAMHK 173 (795)
T ss_dssp EESSC-EEEEETTTTEEEE----ECCEETTEECCCCEEEEEETTE--EEE-EET-TEEEEEETTTTEE-ECSSSCHHHHT
T ss_pred EeCCc-hheeCCCCCeEEe----ccccccCCCceEEEEEECCCCC--EEE-EEC-CceEEEECCCCEE-EeccCCCCCCc
Confidence 55565 8999987764321 211111 288999988887 333 443 5588999 44433 22211 1 112
Q ss_pred -eEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 497 -VYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 497 -v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
|.++.... ++. |..++.++.|..|+..+....... ......|.++...++|.+.+... .+-|.+||..++
T Consensus 174 ~i~~i~~d~--~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lwigt~-----~~Gl~~~~~~~~ 245 (795)
T 4a2l_A 174 TIASTLYRQ--GDQ-IYIGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTRIWVATE-----GAGLFLINPKTK 245 (795)
T ss_dssp CCEEEEEEE--TTE-EEEEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTEEEEEEB-----SSCEEEEETTTT
T ss_pred ceEEEEECC--CCC-EEEEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCCEEEEEC-----CCCeEEEeCCCC
Confidence 77776643 444 555666656888987665543321 12345688888888887666542 334888998887
Q ss_pred eeEEEeccc------CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-----CCCCCCCeeEEecCCCE
Q 001319 575 TIKRTYAGF------RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 575 ~~~~~~~~~------~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~~s~~g~~ 643 (1101)
+........ ....+.++...++|... .|+.+ -|.+||..++......... -....|.++...++|.+
T Consensus 246 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~l 323 (795)
T 4a2l_A 246 EIKNYLHSPSNPKSISSNYIRSLAMDSQNRLW-IGTFN-DLNIYHEGTDSFASYSSNPVENGSLSQRSVRSIFMDSQGGM 323 (795)
T ss_dssp EEEEECCCTTCTTSCSCSBEEEEEECTTSCEE-EEESS-CEEEEETTTTEEEEECCCTTSTTSCSSSCEEEEEECTTSCE
T ss_pred eEEEeecCCCCccccCCCeEEEEEEcCCCCEE-EEeCC-hhheEcCCCCeEEEEecCCCCCCCCCCCcEEEEEEeCCcCE
Confidence 655433221 12358888888877654 45555 5899998877654432211 11236788888888864
Q ss_pred EEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCC
Q 001319 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSG 723 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 723 (1101)
.+|+.++-|..|+..+.. +..+.... ...
T Consensus 324 -Wigt~~~Gl~~~~~~~~~--~~~~~~~~---------------~~~--------------------------------- 352 (795)
T 4a2l_A 324 -WLGTYFGGLNYYHPIRNR--FKNIRNIP---------------YKN--------------------------------- 352 (795)
T ss_dssp -EEEESSSCEEEECGGGGS--SEEECCCT---------------TSS---------------------------------
T ss_pred -EEEECCCCeEEeCCCccc--ceEEcCCC---------------CCC---------------------------------
Confidence 557777778888765431 11111000 000
Q ss_pred CeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCC
Q 001319 724 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 803 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1101)
......|.++...++|. +..++.++.+..|+...... ..+....+. ....-.
T Consensus 353 ----------~l~~~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~------------~~~~~~~~~-----~~~~l~ 404 (795)
T 4a2l_A 353 ----------SLSDNVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRF------------TSYTLQEDE-----SARGIG 404 (795)
T ss_dssp ----------SCSCSSEEEEEECTTSC-EEEEESSSCEEEECTTTCCE------------EEECCC-----------CCS
T ss_pred ----------CCCCCeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcE------------EEEecCCCC-----cccCCC
Confidence 11345677888888776 56666666677776432110 000000000 000003
Q ss_pred CCCEeEEEecCCCC-eEEEEcCCeEEEEECCCceEEEEee----CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 804 EEAVPCIALSKNDS-YVMSATGGKISLFNMMTFKVMTTFM----SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
...|.+++..++|. +.+...++.|..||..+++...... .+...|.++...+ ++.+.+ |+. +-+.+|+..++
T Consensus 405 ~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lwi-gt~-~Gl~~~~~~~~ 481 (795)
T 4a2l_A 405 SNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDG-EGNLWL-GTL-SALVRFNPEQR 481 (795)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECS-SSCEEE-EES-SCEEEEETTTT
T ss_pred CccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECC-CCCEEE-Eec-CceeEEeCCCC
Confidence 46799999999998 5554446789999998876544322 1345688999887 676554 444 45899998877
Q ss_pred eEEEeecc------CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe-ecCCCCCCCcceEEEcCCCCEE
Q 001319 879 EVKSKLKG------HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-IPAGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 879 ~~~~~~~~------h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~~~~~~~~~v~~~~~s~d~~~l 951 (1101)
+....... +...|.++...++|+..+... + -|..||..+++. ..... ...+-....+.++..+++|.+.
T Consensus 482 ~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-~-Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lW 557 (795)
T 4a2l_A 482 SFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-E-GLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIW 557 (795)
T ss_dssp EEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-S-CEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEE
T ss_pred eEEEccccccccccCCceEEEEEECCCCCEEEEeC-C-ceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEE
Confidence 65432211 236799999999988766544 4 488898876543 11000 0111112467889999999977
Q ss_pred EEEeCCeEEEEEcCCceeeeEeccCCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccC
Q 001319 952 LVVHETQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1030 (1101)
Q Consensus 952 ~~~~d~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
+++.. .+..||..+++... +...++ ....|.++...++|++.+++ ++-|..||..+++.. .+......+
T Consensus 558 igT~~-Gl~~~d~~~~~~~~-~~~~~gl~~~~i~~i~~d~~g~lWi~t--~~Gl~~~~~~~~~~~-~~~~~dGl~----- 627 (795)
T 4a2l_A 558 VGTRE-GFYCFNEKDKQIKR-YNTTNGLPNNVVYGILEDSFGRLWLST--NRGISCFNPETEKFR-NFTESDGLQ----- 627 (795)
T ss_dssp EEESS-CEEEEETTTTEEEE-ECGGGTCSCSCEEEEEECTTSCEEEEE--TTEEEEEETTTTEEE-EECGGGTCS-----
T ss_pred EEeCC-CceeECCCCCcEEE-eCCCCCCchhheEEEEECCCCCEEEEc--CCceEEEcCCCCcEE-EcCCcCCCc-----
Confidence 66554 79999987765433 322111 14569999999999877665 345888998877643 333211111
Q ss_pred CCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1031 GSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1031 h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
......-++...+ ++. |..|+.+| +..++...
T Consensus 628 -~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~~~p~~ 659 (795)
T 4a2l_A 628 -SNQFNTASYCRTS-VGQ-MYFGGING-ITTFRPEL 659 (795)
T ss_dssp -CSCEEEEEEEECT-TSC-EEEEETTE-EEEECGGG
T ss_pred -cccCccCceeECC-CCe-EEEecCCc-eEEEcHHH
Confidence 1111122444455 455 55556666 55666543
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.67 E-value=5.8e-14 Score=150.94 Aligned_cols=243 Identities=12% Similarity=0.109 Sum_probs=177.6
Q ss_pred CCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC------CCCCeeEEEEecCCCCEEEEEeC-CCcEEEEE
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS------PPPASTFLAFHPQDNNIIAIGTE-DSTIHIYN 874 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~-dg~v~iwd 874 (1101)
+-....+++++++|+++++.. ++.|.+||.. ++.+..+.. +...+..+++++.++.++++... ++.|++|+
T Consensus 28 ~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d 106 (286)
T 1q7f_A 28 QFTEPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYN 106 (286)
T ss_dssp CBSCEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEEC
T ss_pred ccCCCceEEECCCCCEEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEEC
Confidence 456688999999999888876 7899999987 666666542 33568899995327777766643 88999999
Q ss_pred eecceEEEeec-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE
Q 001319 875 VRVDEVKSKLK-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 875 ~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
.+++.+..+. .+...+.+++++++|+++++...++.|.+||... +.... ... ... ...+..++++++|.++++
T Consensus 107 -~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g-~~~~~--~~~-~~~-~~~p~~i~~~~~g~l~v~ 180 (286)
T 1q7f_A 107 -QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNG-NVLHK--FGC-SKH-LEFPNGVVVNDKQEIFIS 180 (286)
T ss_dssp -TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTS-CEEEE--EEC-TTT-CSSEEEEEECSSSEEEEE
T ss_pred -CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCC-CEEEE--eCC-CCc-cCCcEEEEECCCCCEEEE
Confidence 6677766664 3456789999999999888888889999999653 32211 111 111 146789999999997776
Q ss_pred Ee-CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC-cEEEEeCCCCceeEeeCCCCcCCCcccCC
Q 001319 954 VH-ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-NIGVFDADTLRLRCYIAPSTYLSPSVLNG 1031 (1101)
Q Consensus 954 ~~-d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~h 1031 (1101)
.. ++.|.+|+.. ++.+..+... ++...+..++++++|+++++...++ .|.+||. +++.+..+.. +
T Consensus 181 ~~~~~~i~~~~~~-g~~~~~~~~~-g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~-~g~~~~~~~~----------~ 247 (286)
T 1q7f_A 181 DNRAHCVKVFNYE-GQYLRQIGGE-GITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALES----------K 247 (286)
T ss_dssp EGGGTEEEEEETT-CCEEEEESCT-TTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEE----------S
T ss_pred ECCCCEEEEEcCC-CCEEEEEccC-CccCCCcEEEECCCCCEEEEeCCCCEEEEEECC-CCCEEEEEcc----------c
Confidence 44 8899999974 5555555432 2236789999999999888888776 9999995 4666655542 2
Q ss_pred CCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 1032 SQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1032 ~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
.....+.+++++| ++.++++ +.|++|++|++...
T Consensus 248 ~~~~~~~~i~~~~-~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 248 VKHAQCFDVALMD-DGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp SCCSCEEEEEEET-TTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcceeEEECC-CCcEEEE-CCCCeEEEEEcccc
Confidence 2223467899999 6777777 67999999998654
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.67 E-value=7.5e-15 Score=163.11 Aligned_cols=262 Identities=10% Similarity=0.119 Sum_probs=176.3
Q ss_pred CcEEEEEEecCCceEEEEE--------eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 345 STVISMDFHPSHQTLLLVG--------SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg--------~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
..+...+| ||++++.+. ..++.|.+||+.+++... + ..+.+++|||
T Consensus 15 ~~~~~~~~--dG~~i~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~--------------------l----~~~~~~~~Sp 68 (347)
T 2gop_A 15 AYLSDPRT--KGELVAYVLTKANLKDNKYENTIVIENLKNNARRF--------------------I----ENATMPRISP 68 (347)
T ss_dssp CEEEEEEE--ETTEEEEEEEEEETTTTEEEEEEEEEETTTCCEEE--------------------E----ESCEEEEECT
T ss_pred EEcccceE--CCcEEEEEEeecCcccCCccceEEEEeCCCCceEE--------------------c----ccCCCeEECC
Confidence 36777888 898765442 236789999998876432 2 4688999999
Q ss_pred CCCEEEEEECC---C--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC------------------
Q 001319 417 DGNYVGVAFTK---H--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------------------ 473 (1101)
Q Consensus 417 dg~~las~~~d---~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~------------------ 473 (1101)
||++||.++.+ + .|.+||+.+++... +..+.. +..++|+|||+. |+.++.
T Consensus 69 Dg~~la~~~~~~~~~~~~l~~~~~~~g~~~~----l~~~~~-~~~~~wspdg~~--l~~~~~~~~~~~~~~~~~~~~~~~ 141 (347)
T 2gop_A 69 DGKKIAFMRANEEKKVSEIWVADLETLSSKK----ILEAKN-IRSLEWNEDSRK--LLIVGFKRREDEDFIFEDDVPAWF 141 (347)
T ss_dssp TSSEEEEEEEETTTTEEEEEEEETTTTEEEE----EEEESE-EEEEEECTTSSE--EEEEEECCCC---------CCCC-
T ss_pred CCCEEEEEEeccCCCcceEEEEECCCCceEE----EEcCCC-ccceeECCCCCE--EEEEEccCCCcCCcEEEcccceee
Confidence 99999988754 3 47888888876443 333334 999999999994 544432
Q ss_pred ---------CceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCC-------eEEEEecCCCCeeeeccC
Q 001319 474 ---------DKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-------KIKAWLYDTMGSRVDYDA 536 (1101)
Q Consensus 474 ---------d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~-------~i~~wd~~~~~~~~~~~~ 536 (1101)
...|.+|| .+++.+..+.. . .+..++|++ +| +++++..++ ...+|.+++ .....+..
T Consensus 142 ~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~-~~~~~~~sp--dg-~~~~~~~~~~~~~~~~~~~l~~~d~-~~~~~l~~ 215 (347)
T 2gop_A 142 DDLGFFDGEKTTFWIFDTESEEVIEEFEK-P-RFSSGIWHR--DK-IVVNVPHREIIPQYFKFWDIYIWED-GKEEKMFE 215 (347)
T ss_dssp --------CEEEEEEEETTTTEEEEEEEE-E-TTCEEEEET--TE-EEEEEECCCSSCCSSCCEEEEEEET-TEEEEEEE
T ss_pred cCcccccCccceEEEEECCCCeEEeeecC-C-CcccccCCC--Ce-EEEEEecccccccccccccEEEeCC-CceEEecc
Confidence 35799999 56655355655 3 788888876 66 777765542 445665553 33333332
Q ss_pred CCCceEEEEEccCCCEEEEeecCCC----CCceEEEEeCCCCeeEEEecccCCcceEE-EEEeCCCCEEEEEeCCCcEEE
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKD----GDSFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~----~~~~i~iwd~~~~~~~~~~~~~~~~~v~~-~~~~~~~~~l~~~~~dg~i~i 611 (1101)
+ ..+..+ +|||++++.++.... ....|++|| +++......++.. .+.. +.|+ ++ .+++++.++.+++
T Consensus 216 ~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~-~~~~~~~~s-dg-~~~~~~~~~~~~l 287 (347)
T 2gop_A 216 K-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDR-GVGQAKIKD-GK-VYFTLFEEGSVNL 287 (347)
T ss_dssp E-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCS-EEEEEEEET-TE-EEEEEEETTEEEE
T ss_pred C-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCc-ccCCccEEc-Cc-EEEEEecCCcEEE
Confidence 3 344444 999999988764221 235788898 5655444444333 5665 8899 88 8888899999999
Q ss_pred EECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcE-EEEEcc
Q 001319 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGF-KILANA 659 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i-~iwd~~ 659 (1101)
| +.+++....... ...|.+++|+| .++++++.++.. .+|.+.
T Consensus 288 ~-~~~g~~~~~~~~---~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 288 Y-IWDGEIKPIAKG---RHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp E-EESSSEEEEECS---SSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred E-EcCCceEEEecC---CCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 9 876665444332 33678899999 677777776664 777765
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=4.2e-11 Score=148.41 Aligned_cols=542 Identities=10% Similarity=0.075 Sum_probs=321.2
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeee-----cccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID-----AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~-----~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
...|.+|.-.++|. |-.|..+| +..||-.. .+.+.... -....|.++...++|. |..|+.+ -+..|
T Consensus 42 ~n~v~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~~~~~~~~l~~n~I~~i~~d~~g~---lWigT~~-Gl~~y 112 (795)
T 4a2l_A 42 QSTVFSIDQDKRGN-MWFATYDG-VNKYDGYA---FTVYQHNEDDPNSIANDISRIVKTDSQGR---VWIGTRD-GLSRY 112 (795)
T ss_dssp SSCEEEEEECTTSC-EEEEETTE-EEEECSSC---EEEECCCTTCTTSCSCSCEEEEEECTTSC---EEEEESS-CEEEE
T ss_pred cceeEEEEEcCCCC-EEEeecCc-CcccCCCc---eEEEeCCCCCCCcccccceeEEEECCCCC---EEEEeCC-chhee
Confidence 45899999988884 45677777 66676432 22111000 0135699999998887 4445544 48899
Q ss_pred E-cCCceeEEeecCCc----CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC-CCc-eEEEEEccCCCEE
Q 001319 481 E-LSGRKLFNFEGHEA----PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-GHW-CTTMLYSADGSRL 553 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~----~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-~~~-v~~~~~s~d~~~l 553 (1101)
| .+++ ...+..... .|.++.... +|.+.+ ++. +.|..||..+.......... ... |.++...++|...
T Consensus 113 d~~~~~-f~~~~~~~~~~~~~i~~i~~d~--~g~lwi-~t~-~gl~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lw 187 (795)
T 4a2l_A 113 DEEKDI-FQNFFYEKNGKHLQVNGIEEIS--PEQLLI-STP-EGLIMFDIKESKFIDDSFSTAMHKTIASTLYRQGDQIY 187 (795)
T ss_dssp ETTTTE-EEEECCEETTEECCCCEEEEEE--TTEEEE-EET-TEEEEEETTTTEEECSSSCHHHHTCCEEEEEEETTEEE
T ss_pred CCCCCe-EEeccccccCCCceEEEEEECC--CCCEEE-EEC-CceEEEECCCCEEEeccCCCCCCcceEEEEECCCCCEE
Confidence 9 5444 333332111 177776543 554444 444 55888987654322211100 113 8888888888766
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-----CC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GG 628 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~ 628 (1101)
+.. . ++-|..|+..+++............+.++...+++. +..++.++-+.+||..+++........ -.
T Consensus 188 igt-~----~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~ 261 (795)
T 4a2l_A 188 IGT-S----TDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIKNYLHSPSNPKSIS 261 (795)
T ss_dssp EEE-S----SSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEEEECCCTTCTTSCS
T ss_pred EEE-C----CCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEEEeecCCCCccccC
Confidence 543 2 335888998877654332221233577777777764 555655555899998877654332211 01
Q ss_pred CCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCC
Q 001319 629 LPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1101)
Q Consensus 629 ~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 708 (1101)
...|.++...++|.+.+ |+.+ -|.+|+..++. +..+..... +..
T Consensus 262 ~~~i~~i~~d~~g~lWi-gt~~-Gl~~~~~~~~~--~~~~~~~~~--------------~~~------------------ 305 (795)
T 4a2l_A 262 SNYIRSLAMDSQNRLWI-GTFN-DLNIYHEGTDS--FASYSSNPV--------------ENG------------------ 305 (795)
T ss_dssp CSBEEEEEECTTSCEEE-EESS-CEEEEETTTTE--EEEECCCTT--------------STT------------------
T ss_pred CCeEEEEEEcCCCCEEE-EeCC-hhheEcCCCCe--EEEEecCCC--------------CCC------------------
Confidence 23578888888887555 4444 58888866541 111110000 000
Q ss_pred CCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecccccccc
Q 001319 709 VRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 788 (1101)
Q Consensus 709 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1101)
.-....|.++...++|. +..++.++.+..|+.....+ ..+..
T Consensus 306 -------------------------~l~~~~i~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~~~ 347 (795)
T 4a2l_A 306 -------------------------SLSQRSVRSIFMDSQGG-MWLGTYFGGLNYYHPIRNRF------------KNIRN 347 (795)
T ss_dssp -------------------------SCSSSCEEEEEECTTSC-EEEEESSSCEEEECGGGGSS------------EEECC
T ss_pred -------------------------CCCCCcEEEEEEeCCcC-EEEEECCCCeEEeCCCcccc------------eEEcC
Confidence 11345688888888887 56666666677775432211 00000
Q ss_pred CCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC--------CCCCeeEEEEecCCCCE
Q 001319 789 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS--------PPPASTFLAFHPQDNNI 860 (1101)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~--------~~~~i~~l~~s~~~~~~ 860 (1101)
... ...-....|.+++..++|.+.+...++.|..|+..+++....... ....|.+++..+ ++.+
T Consensus 348 ~~~-------~~~l~~~~V~~i~~d~~g~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~~ 419 (795)
T 4a2l_A 348 IPY-------KNSLSDNVVSCIVEDKDKNLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDE-KKSL 419 (795)
T ss_dssp CTT-------SSSCSCSSEEEEEECTTSCEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEET-TTTE
T ss_pred CCC-------CCCCCCCeeEEEEECCCCCEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcC-CCCE
Confidence 000 000134569999999999877765677899999887765443211 235688999988 7775
Q ss_pred EEEEeCCCcEEEEEeecceEEEeec----cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCC
Q 001319 861 IAIGTEDSTIHIYNVRVDEVKSKLK----GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTP 936 (1101)
Q Consensus 861 la~g~~dg~v~iwd~~~~~~~~~~~----~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~ 936 (1101)
|.+|+.++-|..||..+++...... .+...|.++...++|++.+.. .+| |.+||..+++...............
T Consensus 420 lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~G-l~~~~~~~~~~~~~~~~~~~~~~~~ 497 (795)
T 4a2l_A 420 VYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LSA-LVRFNPEQRSFTTIEKEKDGTPVVS 497 (795)
T ss_dssp EEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SSC-EEEEETTTTEEEECCBCTTCCBCCC
T ss_pred EEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cCc-eeEEeCCCCeEEEccccccccccCC
Confidence 6678887789999988776543221 234679999998888866644 444 8899988754321110000001112
Q ss_pred CCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEecc----CCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 937 TGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTP----QDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 937 ~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~----~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
..+.++..+++|.+.+... +.+..|+..+++. .+.. .......|.++...++|++.++.. . -|..||..++
T Consensus 498 ~~i~~i~~d~~g~lWigt~-~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWigT~-~-Gl~~~d~~~~ 572 (795)
T 4a2l_A 498 KQITTLFRDSHKRLWIGGE-EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVGTR-E-GFYCFNEKDK 572 (795)
T ss_dssp CCEEEEEECTTCCEEEEES-SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEEES-S-CEEEEETTTT
T ss_pred ceEEEEEECCCCCEEEEeC-CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEEeC-C-CceeECCCCC
Confidence 5688899999999877766 7799999887765 2221 011246799999999999666544 3 5889998877
Q ss_pred ceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1013 RLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1013 ~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+... +.....++ .. .+.++...+ ++.+.+++ ++.|..|+..+++
T Consensus 573 ~~~~-~~~~~gl~------~~--~i~~i~~d~-~g~lWi~t--~~Gl~~~~~~~~~ 616 (795)
T 4a2l_A 573 QIKR-YNTTNGLP------NN--VVYGILEDS-FGRLWLST--NRGISCFNPETEK 616 (795)
T ss_dssp EEEE-ECGGGTCS------CS--CEEEEEECT-TSCEEEEE--TTEEEEEETTTTE
T ss_pred cEEE-eCCCCCCc------hh--heEEEEECC-CCCEEEEc--CCceEEEcCCCCc
Confidence 5543 22111111 11 245677776 57776665 4567888877654
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.8e-14 Score=158.08 Aligned_cols=252 Identities=12% Similarity=0.066 Sum_probs=184.8
Q ss_pred CCCCEeEEEecCCCCeEEEEc-C------------------------CeEEEEECCCceEEEEee-CCCCCeeEEEEecC
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-G------------------------GKISLFNMMTFKVMTTFM-SPPPASTFLAFHPQ 856 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-d------------------------g~i~vwd~~~~~~~~~~~-~~~~~i~~l~~s~~ 856 (1101)
.-..+.+++++++|+++++.. + +.|.+||..+++.+..+. ++......+++++
T Consensus 22 ~l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~- 100 (329)
T 3fvz_A 22 LPGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDT- 100 (329)
T ss_dssp CCSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECT-
T ss_pred ecCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECC-
Confidence 346689999999999998887 4 379999999999877665 3445789999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecce-EEEee---------ccCCCCeeEEEEcC-CCCEEEEEe-CCCcEEEEECCCCcccc
Q 001319 857 DNNIIAIGTEDSTIHIYNVRVDE-VKSKL---------KGHQKRITGLAFST-SLNILVSSG-ADAQLCVWSIDTWEKRK 924 (1101)
Q Consensus 857 ~~~~la~g~~dg~v~iwd~~~~~-~~~~~---------~~h~~~V~~l~~s~-d~~~l~s~s-~Dg~v~lwd~~~~~~~~ 924 (1101)
+++++++...++.|++|+..... .+..+ .++...+..++++| ++.++++.+ .++.|++|+. .++...
T Consensus 101 ~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~~-~g~~~~ 179 (329)
T 3fvz_A 101 DGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFSP-SGKFVT 179 (329)
T ss_dssp TSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEECT-TSCEEE
T ss_pred CCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEcC-CCCEEE
Confidence 88888888889999999975442 44444 34555789999999 788888886 6899999994 444332
Q ss_pred ceEEeecC----CCCCCCcceEEEcCC-CCEEEEE-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEcc------CC
Q 001319 925 SVTIHIPA----GKTPTGDTRVQFNAD-QVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSC------NS 992 (1101)
Q Consensus 925 ~~~~~~~~----~~~~~~v~~~~~s~d-~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~------dg 992 (1101)
.....-.. .........++++|+ +.++++. .++.|++|+..+++.+..+... .+...+..++|+| +|
T Consensus 180 ~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~~~~-~~~~~~~~~~~~pg~~~~~~g 258 (329)
T 3fvz_A 180 QWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREIKHA-SFGRNVFAISYIPGFLFAVNG 258 (329)
T ss_dssp EECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEECCT-TTTTCEEEEEEETTEEEEEEC
T ss_pred EeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEEecc-ccCCCcceeeecCCEEEEeCC
Confidence 22111000 001134788999999 5544443 3789999999989988887543 3367788999999 44
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCC
Q 001319 993 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 993 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
+..++...+..|++||+.+++.+..+... ..+...+.+++++| ++.++++...+++|++|++...
T Consensus 259 ~~~v~~~~~~~v~~~~~~~g~~~~~~~~~---------~~~~~~p~~ia~~~-dG~lyvad~~~~~I~~~~~~~~ 323 (329)
T 3fvz_A 259 KPYFGDQEPVQGFVMNFSSGEIIDVFKPV---------RKHFDMPHDIVASE-DGTVYIGDAHTNTVWKFTLTEK 323 (329)
T ss_dssp CCCTTCSCCCCEEEEETTTCCEEEEECCS---------SSCCSSEEEEEECT-TSEEEEEESSSCCEEEEEEEEC
T ss_pred CEEeccCCCcEEEEEEcCCCeEEEEEcCC---------CCccCCeeEEEECC-CCCEEEEECCCCEEEEEeCCcc
Confidence 43333445568999999999998877521 12234567899999 6789999999999999998653
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.2e-13 Score=152.22 Aligned_cols=272 Identities=10% Similarity=0.015 Sum_probs=184.4
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
..|.+++|+|++.. ++..+.++.++.|. ++... .+.++...+.+++|+|+|++++++
T Consensus 6 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~---~~~~~-------------------~~~~~~~~~~~~~~~~~g~l~~~~ 62 (333)
T 2dg1_A 6 QDLPTLFYSGKSNS-AVPIISESELQTIT---AEPWL-------------------EISKKGLQLEGLNFDRQGQLFLLD 62 (333)
T ss_dssp CCCCBCCSCGGGGC-SSCCCCGGGSCEEE---CEEEE-------------------EEESSCCCEEEEEECTTSCEEEEE
T ss_pred cccceeeecCCccc-eeEEeecccCcccc---cceeE-------------------EEeccCccccCcEECCCCCEEEEE
Confidence 35788899999874 45557788999992 22221 144566678999999999988888
Q ss_pred ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC----ceEEEEE-cCCceeEEee--cCCcCe
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKLFNFE--GHEAPV 497 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d----~~v~iwd-~~~~~~~~~~--~h~~~v 497 (1101)
..++.|.+||.++++... ....+...+.+++|+++|+ ++++...+ +.|.+|| .++.....+. .+...+
T Consensus 63 ~~~~~i~~~d~~~~~~~~---~~~~~~~~~~~i~~~~dg~--l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~ 137 (333)
T 2dg1_A 63 VFEGNIFKINPETKEIKR---PFVSHKANPAAIKIHKDGR--LFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCI 137 (333)
T ss_dssp TTTCEEEEECTTTCCEEE---EEECSSSSEEEEEECTTSC--EEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCE
T ss_pred CCCCEEEEEeCCCCcEEE---EeeCCCCCcceEEECCCCc--EEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcc
Confidence 889999999999876433 1224667899999999998 66666656 6899999 4444332332 244568
Q ss_pred EEEecccCCCccEEEEecc------CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 498 YSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..+++.+ +|.++++... .+.|..|+.++.+... +......+..++|+|+|+.++.+.. .++.|.+||.
T Consensus 138 ~~i~~d~--~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~i~~~~dg~~l~v~~~---~~~~i~~~d~ 211 (333)
T 2dg1_A 138 DDMVFDS--KGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNISVANGIALSTDEKVLWVTET---TANRLHRIAL 211 (333)
T ss_dssp EEEEECT--TSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEE
T ss_pred cceEECC--CCCEEEEeccccccCCCceEEEEeCCCCEEEE-eecCCCcccceEECCCCCEEEEEeC---CCCeEEEEEe
Confidence 8999876 5667666553 2455555554433322 2222335788999999997765542 2678999998
Q ss_pred CC-CeeEEEe------cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC----CCCCCeeEEecC
Q 001319 572 SE-GTIKRTY------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG----LPNLPRLRFSKE 640 (1101)
Q Consensus 572 ~~-~~~~~~~------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~----~~~v~~v~~s~~ 640 (1101)
.+ +.....+ .......+..++++++|+.+++...++.|.+||. .++.+..+..... ...+.+++|+|+
T Consensus 212 ~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~~~g~~~~~~~~~~~~d 290 (333)
T 2dg1_A 212 EDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPG 290 (333)
T ss_dssp CTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTT
T ss_pred cCCCcCcccccceEEEecCCCCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCCccccccCcceEEECCC
Confidence 63 3322211 1111125677999999988887778899999998 4666666644321 114789999999
Q ss_pred CCEEEEEEcCC
Q 001319 641 GNLLAVTTADN 651 (1101)
Q Consensus 641 g~~l~~~~~d~ 651 (1101)
++.|++++.++
T Consensus 291 g~~L~v~~~~g 301 (333)
T 2dg1_A 291 TNQLIICSNDI 301 (333)
T ss_dssp SCEEEEEEECG
T ss_pred CCEEEEEeCcc
Confidence 88887776653
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-13 Score=145.75 Aligned_cols=244 Identities=7% Similarity=-0.014 Sum_probs=174.7
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
...+.....+++|+|+|+.+++++..++.|..||..++ . . .+..+...+.+++|+|+|+
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-~-~-------------------~~~~~~~~~~~l~~~~dg~ 81 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-L-S-------------------PEMHPSHHQNGHCLNKQGH 81 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-E-E-------------------EEESSCSSEEEEEECTTCC
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-e-E-------------------EEECCCCCcceeeECCCCc
Confidence 33456778999999999877788889999999999876 2 2 1334667899999999999
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEE----ec-------------CCceEEEEE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVT----CG-------------DDKLIKVWE 481 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s----~~-------------~d~~v~iwd 481 (1101)
++++...++.|.+||..+++.........+ ....+.+++++|+|+ ++++ |+ ..+.|..++
T Consensus 82 l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~--l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~ 159 (296)
T 3e5z_A 82 LIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGS--LWFSDPTYGIDKPEEGYGGEMELPGRWVFRLA 159 (296)
T ss_dssp EEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSC--EEEEECSHHHHCGGGSSCCCCCSSSCEEEEEC
T ss_pred EEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCC--EEEECCccccccccccccccccCCCcEEEEEC
Confidence 888777778999999988764321111111 123567899999998 6776 33 134566666
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC-CCCe---eeeccCCCCceEEEEEccCCCEEEEee
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-TMGS---RVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-~~~~---~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
..++ +..+..+......++|++ +++.+++.+.++.|.+|++. ++.. ...+......+.+++++++|++.++.
T Consensus 160 ~~g~-~~~~~~~~~~~~gi~~s~--dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~- 235 (296)
T 3e5z_A 160 PDGT-LSAPIRDRVKPNGLAFLP--SGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVDAGGLIWASA- 235 (296)
T ss_dssp TTSC-EEEEECCCSSEEEEEECT--TSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEBTTSCEEEEE-
T ss_pred CCCC-EEEeecCCCCCccEEECC--CCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEECCCCCEEEEc-
Confidence 4444 445556667789999977 56777888888999999987 3333 22223344457789999999877665
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE-eCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-DTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
++.|.+||.. ++.+..+..+.. +..++| +|+++.|++++.+ .+..++..+.++
T Consensus 236 -----~~~v~~~~~~-g~~~~~~~~~~~--~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~~ 289 (296)
T 3e5z_A 236 -----GDGVHVLTPD-GDELGRVLTPQT--TSNLCFGGPEGRTLYMTVST-EFWSIETNVRGL 289 (296)
T ss_dssp -----TTEEEEECTT-SCEEEEEECSSC--CCEEEEESTTSCEEEEEETT-EEEEEECSCCBC
T ss_pred -----CCeEEEECCC-CCEEEEEECCCC--ceeEEEECCCCCEEEEEcCC-eEEEEEcccccc
Confidence 4579999986 777777776654 777889 5888999988876 455556655543
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=168.45 Aligned_cols=249 Identities=9% Similarity=0.006 Sum_probs=172.7
Q ss_pred ccCCccEEEEEEccCCCEEEEEECCC-----eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce-
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAFTKH-----LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~~d~-----~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~- 476 (1101)
.+|...+..++|||||++||.+..++ .|++||+.+++.... .+. + ..+..++|+|||+ .|+.++.++.
T Consensus 121 ~~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~--~~~-~-~~~~~~~wspDg~--~l~~~~~~~~~ 194 (710)
T 2xdw_A 121 DDGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLE-R-VKFSCMAWTHDGK--GMFYNAYPQQD 194 (710)
T ss_dssp TTSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEE-E-ECSCCEEECTTSS--EEEEEECCCCS
T ss_pred cCCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc--ccc-C-cccceEEEEeCCC--EEEEEEECCcc
Confidence 34666899999999999999876543 899999999886542 121 2 2367899999999 5666666655
Q ss_pred ---------------EEEEE-cCCce----eEEeecCCcCeEEEecccCCCccEEEEecc-----CCeEEEEecCC----
Q 001319 477 ---------------IKVWE-LSGRK----LFNFEGHEAPVYSICPHHKENIQFIFSTAI-----DGKIKAWLYDT---- 527 (1101)
Q Consensus 477 ---------------v~iwd-~~~~~----~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-----d~~i~~wd~~~---- 527 (1101)
|++|+ .++.. +.....|...+..+.|++ ||++|+.++. +..|.+||+.+
T Consensus 195 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~~l~~~d~~~~~~~ 272 (710)
T 2xdw_A 195 GKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNG 272 (710)
T ss_dssp SCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSS
T ss_pred ccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcC--CCCEEEEEEEccCCCccEEEEEECcccccc
Confidence 99999 55542 222233555678888877 6678877664 56899999976
Q ss_pred --CC-eeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee--EEEecccCC-cceEEEEEeCCCCEEE
Q 001319 528 --MG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRK-KSNGVVQFDTTQNHFL 601 (1101)
Q Consensus 528 --~~-~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~-~~v~~~~~~~~~~~l~ 601 (1101)
+. ....+..+...+.. .|+++|+.++..+........|.+||+.++.. ...+..+.. ..+..++|++++..++
T Consensus 273 ~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~lv~ 351 (710)
T 2xdw_A 273 ITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVL 351 (710)
T ss_dssp SCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEETTTEEEE
T ss_pred cCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEEcCCEEEE
Confidence 42 33444444444444 58899998887765333356899999988742 244444433 3577788887777777
Q ss_pred EEeCCCc--EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc----CCcEEEEEccccc
Q 001319 602 AVGEDSQ--IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIGL 662 (1101)
Q Consensus 602 ~~~~dg~--i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~~ 662 (1101)
+...++. |++|++.+++.+..+..+ ...+..++++|++..++.... .+.++.||+.++.
T Consensus 352 ~~~~~g~~~l~~~~~~~g~~~~~l~~~--~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 352 CYLHDVKNTLQLHDLATGALLKIFPLE--VGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEETTEEEEEEEETTTCCEEEEECCC--SSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EEEECCEEEEEEEECCCCCEEEecCCC--CceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 7777874 667787678777777655 335778889999887765432 4689999987763
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.60 E-value=2.8e-13 Score=150.28 Aligned_cols=243 Identities=10% Similarity=0.119 Sum_probs=164.5
Q ss_pred CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC-CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 517 DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 517 d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
++.|.+||+.+++.... ..+..++|||||++|+..+... ++...|++||+.+++......... +..++|+|
T Consensus 42 ~~~l~~~d~~~~~~~~l-----~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~---~~~~~wsp 113 (347)
T 2gop_A 42 ENTIVIENLKNNARRFI-----ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN---IRSLEWNE 113 (347)
T ss_dssp EEEEEEEETTTCCEEEE-----ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE---EEEEEECT
T ss_pred cceEEEEeCCCCceEEc-----ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC---ccceeECC
Confidence 67899999987765433 4578899999999999876422 134568999999888766554432 78899999
Q ss_pred CCCEEEEEeC---------------------------CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 596 TQNHFLAVGE---------------------------DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 596 ~~~~l~~~~~---------------------------dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
+|+.|+.++. ...|++||+.+++.+..+.. . .+..++|+|+| +++++.
T Consensus 114 dg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~-~---~~~~~~~spdg-~~~~~~ 188 (347)
T 2gop_A 114 DSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK-P---RFSSGIWHRDK-IVVNVP 188 (347)
T ss_dssp TSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE-E---TTCEEEEETTE-EEEEEE
T ss_pred CCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC-C---CcccccCCCCe-EEEEEe
Confidence 9999988763 25799999998887444443 1 57899999999 777665
Q ss_pred cCC-------cEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEe
Q 001319 649 ADN-------GFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVD 721 (1101)
Q Consensus 649 ~d~-------~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 721 (1101)
.++ ...+|.+.++
T Consensus 189 ~~~~~~~~~~~~~l~~~d~~------------------------------------------------------------ 208 (347)
T 2gop_A 189 HREIIPQYFKFWDIYIWEDG------------------------------------------------------------ 208 (347)
T ss_dssp CCCSSCCSSCCEEEEEEETT------------------------------------------------------------
T ss_pred cccccccccccccEEEeCCC------------------------------------------------------------
Confidence 442 1222221110
Q ss_pred CCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCC
Q 001319 722 SGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGV 801 (1101)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 801 (1101)
..+.+ .
T Consensus 209 --~~~~l------------------------~------------------------------------------------ 214 (347)
T 2gop_A 209 --KEEKM------------------------F------------------------------------------------ 214 (347)
T ss_dssp --EEEEE------------------------E------------------------------------------------
T ss_pred --ceEEe------------------------c------------------------------------------------
Confidence 00000 0
Q ss_pred CCCCCEeEEEecCCCCeEEEEc-C--------CeEEEEECCCceEEEEeeCCCCCeeE-EEEecCCCCEEEEEeCCCcEE
Q 001319 802 NLEEAVPCIALSKNDSYVMSAT-G--------GKISLFNMMTFKVMTTFMSPPPASTF-LAFHPQDNNIIAIGTEDSTIH 871 (1101)
Q Consensus 802 ~~~~~v~~~~~s~dg~~la~~~-d--------g~i~vwd~~~~~~~~~~~~~~~~i~~-l~~s~~~~~~la~g~~dg~v~ 871 (1101)
.+ ..+..+ +|||+.|+.++ + ..|.+|| +++.......+...+.. +.|+ ++ ++++++.++.++
T Consensus 215 ~~-~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~~~~~~~~~~~~~s--dg-~~~~~~~~~~~~ 286 (347)
T 2gop_A 215 EK-VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGILDEVDRGVGQAKIKD--GK-VYFTLFEEGSVN 286 (347)
T ss_dssp EE-ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEESSTTCCSEEEEEEEET--TE-EEEEEEETTEEE
T ss_pred cC-cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEeccccCCcccCCccEEc--Cc-EEEEEecCCcEE
Confidence 01 112222 66666665543 2 3577888 56655545556677886 8897 45 889999999999
Q ss_pred EEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcE-EEEECC
Q 001319 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL-CVWSID 918 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v-~lwd~~ 918 (1101)
|| +.+++... +..+.+.|.+++|+| ..+++++.++.. .+|.++
T Consensus 287 l~-~~~g~~~~-~~~~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 287 LY-IWDGEIKP-IAKGRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EE-EESSSEEE-EECSSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EE-EcCCceEE-EecCCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 99 88766544 444578899999999 677777777765 788776
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.60 E-value=4e-09 Score=130.37 Aligned_cols=594 Identities=11% Similarity=0.087 Sum_probs=335.5
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...|.+|.-.++|.-. .|+.+| +..||-.+ |+.+... . .+.. ...-....|.++...++|..|-+
T Consensus 18 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~--------f~~~~~~-~-~~~~--~~~l~~n~I~~i~~d~~g~~lWi 82 (781)
T 3v9f_A 18 NNYVLSITQDKQGFLW--FATEEG-LNKFDGTR--------FITYYKE-E-QSSS--VQSITGNELNEVYTDPVQPVIWI 82 (781)
T ss_dssp CSBEEEEEECTTSCEE--EEESSC-EEEECSSS--------EEEECCC-S-SCSS--SCCCSCSCEEEEEECSSSSEEEE
T ss_pred cCEeEEEEECCCCCEE--EccCCc-CccccCCc--------eEEEEcC-C-CCCc--cccccccccceEEEcCCCCEEEE
Confidence 4589999999999733 455665 55666322 1111110 0 0000 00012357999999988884566
Q ss_pred EECCCeEEEEeecCCccccccee-eec---ccCcEEEEEEec--CCCceEEEEecCCceEEEEEcCCceeEEeec-----
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQ-IDA---HVGAVNDLAFAY--PNKLLCVVTCGDDKLIKVWELSGRKLFNFEG----- 492 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~-l~~---h~~~V~~l~~s~--d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~----- 492 (1101)
|+.++-+..||..+++....... ... ....|.++.... +|. +..++.++.+..+|........+..
T Consensus 83 gt~~~Gl~~~d~~~~~f~~~~~~~~~~~~l~~~~i~~i~~d~~~~g~---lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~ 159 (781)
T 3v9f_A 83 ATQRAGLNAYNYETQSFSVYQYNPEDPQSLITNDVTHITSSVQAGKG---LWVCTYYRGIEYLDIATGKFTHYNKSTVPA 159 (781)
T ss_dssp EESSSCEEEEETTTTEEEEECCCTTCSSSCSCSCEEEEEECSSTTSE---EEEEESSSCEEEEETTTTEEEEESTTTCTT
T ss_pred EeCCCCcceECCCCCeEEeeccccCCCCCcccCcceEEEecCccCCC---EEEEECCCCeeEEECCCCeEEeeccCcccC
Confidence 77774599999887653221000 000 123688888877 665 4445545568889943333333321
Q ss_pred -CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-------cCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 493 -HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 493 -h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
....|.++.... +| .|..++.++-|..||..+....... ......|.++...++|.+.+... .
T Consensus 160 l~~~~i~~i~~d~--~g-~lwigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwigt~-----~- 230 (781)
T 3v9f_A 160 LPSEQTWTATEAE--DG-KLYIGHVEGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWIGTS-----K- 230 (781)
T ss_dssp CSCCCEEEEEEEE--TT-EEEEEETTTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEEEET-----T-
T ss_pred CCccceEEEEECC--CC-CEEEEecCCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEEEeC-----C-
Confidence 124577776533 44 4555666656888887665433211 11235689999988888766542 3
Q ss_pred eEEEEeCCCCeeEEEecc------cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec-------cC-----
Q 001319 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD-------AE----- 626 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~-------~~----- 626 (1101)
-|.+||..+++....... .....|.++...++| .+..|+..+-|.++|..++....... ..
T Consensus 231 Gl~~~d~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g-~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~ 309 (781)
T 3v9f_A 231 GLALFNANTETFTNFHNNPGNIHGALSSYIFSIKQLKDN-KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYS 309 (781)
T ss_dssp EEEEEETTTTEEEC-----------CCCCEEEEEECTTS-EEEEEESSSCEEEEETTCC---------CEEECBCSSTTS
T ss_pred cHheECCCCCcEEEEEcCCCccccccCceEEEEEECCCC-CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCC
Confidence 588999887765433221 123357778877776 45666665678899987765432211 00
Q ss_pred CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceecc
Q 001319 627 GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERS 706 (1101)
Q Consensus 627 ~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~ 706 (1101)
-....|.++...++|. |.+|+.++-|..++..+.. +..+.. .+..
T Consensus 310 l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~---------------~~~~----------------- 354 (781)
T 3v9f_A 310 LSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPT--FHTWSY---------------SPTQ----------------- 354 (781)
T ss_dssp BSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCS--CEEEC-------------------C-----------------
T ss_pred CCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCc--ceeecc---------------Cccc-----------------
Confidence 1123577888888776 5556767778787765431 111100 0000
Q ss_pred CCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecccccc
Q 001319 707 SPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHW 786 (1101)
Q Consensus 707 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~ 786 (1101)
..........|.++...++|. +..++.++.+..|+...... ..+
T Consensus 355 -----------------------~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~------------~~~ 398 (781)
T 3v9f_A 355 -----------------------MNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA------------IYN 398 (781)
T ss_dssp -----------------------CCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE------------ECC
T ss_pred -----------------------cccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE------------EEc
Confidence 000011335577888777776 55566555566665322100 000
Q ss_pred ccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEee--CCCCCeeEEEEecCCCCEEEEE
Q 001319 787 LPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM--SPPPASTFLAFHPQDNNIIAIG 864 (1101)
Q Consensus 787 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~--~~~~~i~~l~~s~~~~~~la~g 864 (1101)
. .. .......|.+++..++|.+.+...++.+..+|..+++...... .....|.++...+ ++.+. +|
T Consensus 399 ~-~~---------~~~~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~lw-ig 466 (781)
T 3v9f_A 399 K-EN---------RELLSNSVLCSLKDSEGNLWFGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDK-NKKIW-IG 466 (781)
T ss_dssp ---------------CCCSBEEEEEECTTSCEEEEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECT-TSEEE-EE
T ss_pred c-CC---------CCCCCcceEEEEECCCCCEEEEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECC-CCCEE-EE
Confidence 0 00 0014567999999888887775556779999988776543321 1345788988887 66544 45
Q ss_pred eCCCcEEEEEeecceEEEeeccC-----CCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCc
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGH-----QKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 939 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h-----~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 939 (1101)
+. +-|..|+..+++........ ...|.++...++|++.+....+| |..||..+++.. ......+-....+
T Consensus 467 t~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~~~G-l~~~~~~~~~~~---~~~~~~~l~~~~i 541 (781)
T 3v9f_A 467 TH-AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTFGGG-VGIYTPDMQLVR---KFNQYEGFCSNTI 541 (781)
T ss_dssp ET-TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEESSSC-EEEECTTCCEEE---EECTTTTCSCSCE
T ss_pred EC-CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEcCCC-EEEEeCCCCeEE---EccCCCCCCCCee
Confidence 55 55899998776543322211 46799999999888666443345 777888765321 1111222223567
Q ss_pred ceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEee
Q 001319 940 TRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 940 ~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1018 (1101)
.++...++|.+.+++.+|-+..||..+++.. .+....+ ....|.++...++|++.+++ ..| |..|+..+..... +
T Consensus 542 ~~i~~d~~g~lWi~T~~Glv~~~d~~~~~~~-~~~~~~gl~~~~i~~i~~d~~g~lW~~t-~~G-l~~~~~~~~~~~~-~ 617 (781)
T 3v9f_A 542 NQIYRSSKGQMWLATGEGLVCFPSARNFDYQ-VFQRKEGLPNTHIRAISEDKNGNIWAST-NTG-ISCYITSKKCFYT-Y 617 (781)
T ss_dssp EEEEECTTSCEEEEETTEEEEESCTTTCCCE-EECGGGTCSCCCCCEEEECSSSCEEEEC-SSC-EEEEETTTTEEEE-E
T ss_pred EEEEECCCCCEEEEECCCceEEECCCCCcEE-EccccCCCCCceEEEEEECCCCCEEEEc-CCc-eEEEECCCCceEE-e
Confidence 8899999999777766443388888776532 3322211 13468899999999866654 455 8888988765433 3
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
......+ ......-++...+ ++. |..|+.+| +..++...
T Consensus 618 ~~~dGl~------~~~f~~~~~~~~~-~G~-l~~g~~~G-l~~f~p~~ 656 (781)
T 3v9f_A 618 DHSNNIP------QGSFISGCVTKDH-NGL-IYFGSING-LCFFNPDI 656 (781)
T ss_dssp CGGGTCC------SSCEEEEEEEECT-TSC-EEEEETTE-EEEECSCC
T ss_pred cccCCcc------ccccccCceEECC-CCE-EEEECCCc-eEEEChhh
Confidence 2111111 1111122344445 455 55566666 56677654
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.60 E-value=3.5e-13 Score=148.55 Aligned_cols=275 Identities=12% Similarity=0.094 Sum_probs=184.2
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
...+.++.|++++..++..+.++.++.|.-. .... +. .+...+.+++|+++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~~-~~--~~~~~~~~~~~~~~g 56 (333)
T 2dg1_A 5 QQDLPTLFYSGKSNSAVPIISESELQTITAE-------------------------PWLE-IS--KKGLQLEGLNFDRQG 56 (333)
T ss_dssp -CCCCBCCSCGGGGCSSCCCCGGGSCEEECE-------------------------EEEE-EE--SSCCCEEEEEECTTS
T ss_pred ccccceeeecCCccceeEEeecccCcccccc-------------------------eeEE-Ee--ccCccccCcEECCCC
Confidence 3456778899998888877777777777311 0000 11 144557899999999
Q ss_pred CeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC----CcEEEEEeecceEEEeec--cCCC
Q 001319 817 SYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED----STIHIYNVRVDEVKSKLK--GHQK 889 (1101)
Q Consensus 817 ~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~v~iwd~~~~~~~~~~~--~h~~ 889 (1101)
++++++. ++.|.+||..+++.......+...+.++++++ +++++++...+ +.|++||..+++....+. .+..
T Consensus 57 ~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~-dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~ 135 (333)
T 2dg1_A 57 QLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAY 135 (333)
T ss_dssp CEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCC
T ss_pred CEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECC-CCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCC
Confidence 9887776 78999999998887665545667899999999 88888777666 689999988776543332 3456
Q ss_pred CeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEE
Q 001319 890 RITGLAFSTSLNILVSSGA------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAI 961 (1101)
Q Consensus 890 ~V~~l~~s~d~~~l~s~s~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v 961 (1101)
.+.+++++|+|+++++... .+.|..|+..+++...... . ......++|+||++.|.++. ++.|.+
T Consensus 136 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~------~~~~~~i~~~~dg~~l~v~~~~~~~i~~ 208 (333)
T 2dg1_A 136 CIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQ-N------ISVANGIALSTDEKVLWVTETTANRLHR 208 (333)
T ss_dssp CEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEE-E------ESSEEEEEECTTSSEEEEEEGGGTEEEE
T ss_pred cccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeec-C------CCcccceEECCCCCEEEEEeCCCCeEEE
Confidence 7999999999998887654 2455566655543321111 1 03467899999999776643 689999
Q ss_pred EEcCC-ceeeeEe-----ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCcc
Q 001319 962 YDASK-MERIRQW-----TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTV 1035 (1101)
Q Consensus 962 ~d~~~-~~~~~~~-----~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~ 1035 (1101)
|+..+ +..+..+ ..... ...+..++++++|+++++...++.|.+||. +++.+..+..... . ..+..
T Consensus 209 ~d~~~~g~~~~~~~~~~~~~~~~-~~~~~~i~~d~~G~l~v~~~~~~~v~~~d~-~g~~~~~~~~~~~----~--~g~~~ 280 (333)
T 2dg1_A 209 IALEDDGVTIQPFGATIPYYFTG-HEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGR----D--EGHML 280 (333)
T ss_dssp EEECTTSSSEEEEEEEEEEECCS-SSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTG----G--GTCSC
T ss_pred EEecCCCcCcccccceEEEecCC-CCCCCceEECCCCCEEEEEcCCCEEEEECC-CCCEEEEEEcCCC----c--ccccc
Confidence 99963 3322211 11111 246788999999998888878899999998 4666655542110 0 01111
Q ss_pred ceEEEEEecCCCCEEEEEECC
Q 001319 1036 YPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 1036 ~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
.+.+++|+| |+..|+.++.+
T Consensus 281 ~~~~~~~~~-dg~~L~v~~~~ 300 (333)
T 2dg1_A 281 RSTHPQFIP-GTNQLIICSND 300 (333)
T ss_dssp BCCEEEECT-TSCEEEEEEEC
T ss_pred CcceEEECC-CCCEEEEEeCc
Confidence 456889998 56555544444
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-13 Score=143.78 Aligned_cols=253 Identities=9% Similarity=0.045 Sum_probs=190.0
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCC-CCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCC-CCe
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPP-PASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ-KRI 891 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~-~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~-~~V 891 (1101)
.+++|++++ ++.|.+||.++|+.+.++..+. ..+.+++++| ++++++ +.++.|+.||. +++.+..+..+. ..+
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~p-dG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~ 79 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATK-AGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEM 79 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECT-TSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEE
T ss_pred CCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECC-CCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccc
Confidence 457788887 8999999999999999998876 5789999999 889888 45788999998 899998887653 578
Q ss_pred eEEEEcCCCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCcee
Q 001319 892 TGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMER 969 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~ 969 (1101)
.++.+.+||+++++.+. ++.|..+|. +|+.+..................+++.++|.++++.. ++.|..||.+ |+.
T Consensus 80 ~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~ 157 (276)
T 3no2_A 80 QTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQL 157 (276)
T ss_dssp EEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCE
T ss_pred cccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCE
Confidence 89999999999999887 777777776 5555444433211111113455678899999998864 8999999998 999
Q ss_pred eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCE
Q 001319 970 IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1049 (1101)
Q Consensus 970 ~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~ 1049 (1101)
+..+... ..+..+.+.++|..+++++.++.|..+|..+|+.+..+...... ...-..+..+...+ ++.+
T Consensus 158 ~w~~~~~----~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~------~~~l~~~~~~~~~~-~G~i 226 (276)
T 3no2_A 158 LNSVKLS----GTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVNANDIE------GVQLFFVAQLFPLQ-NGGL 226 (276)
T ss_dssp EEEEECS----SCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEEGGGSB------SCCCSEEEEEEECT-TSCE
T ss_pred EEEEECC----CCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEecCCCCC------CccccccccceEcC-CCCE
Confidence 8888763 34556788999999999988889999999999998887621100 11123466788888 6888
Q ss_pred EEEEECC--------CeEEEEeC-CCCCCccccCCCCCCCCCCc
Q 001319 1050 FAIGLTD--------GSVKVMEP-SESEGKWGVSPPVDNGILNS 1084 (1101)
Q Consensus 1050 l~s~~~D--------g~v~iWd~-~~~~~~~~~~~~~~~~~~~~ 1084 (1101)
+++.... +..+++++ .+++-.|......+-|.+++
T Consensus 227 ~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~ 270 (276)
T 3no2_A 227 YICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMIST 270 (276)
T ss_dssp EEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCE
T ss_pred EEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceee
Confidence 8877421 23456666 46678888877777776665
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-13 Score=148.70 Aligned_cols=242 Identities=12% Similarity=0.077 Sum_probs=176.1
Q ss_pred CCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 805 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
.....+++. ++++.++.. ++.|.+||..+++.+.++.. ......+++++ +++++++...++.|.+||..+++....
T Consensus 44 ~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~-~g~lyv~~~~~~~v~~iD~~t~~~~~~ 120 (328)
T 3dsm_A 44 DVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLS-DEKAYVTQIWDYRIFIINPKTYEITGY 120 (328)
T ss_dssp SCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEE-TTEEEEEEBSCSEEEEEETTTTEEEEE
T ss_pred ccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeC-CCeEEEEECCCCeEEEEECCCCeEEEE
Confidence 446677775 344555554 79999999999999888853 46788999998 776555554899999999999988876
Q ss_pred eccCC-----CCeeEEEEcCCCCEEEEEe-CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-C
Q 001319 884 LKGHQ-----KRITGLAFSTSLNILVSSG-ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E 956 (1101)
Q Consensus 884 ~~~h~-----~~V~~l~~s~d~~~l~s~s-~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d 956 (1101)
+.... .....+++ .+++.+++.. .++.|.+||..+++....... + .....++++|+|++++++. +
T Consensus 121 i~~g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~----g---~~p~~i~~~~dG~l~v~~~~~ 192 (328)
T 3dsm_A 121 IECPDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI----G---IQPTSLVMDKYNKMWTITDGG 192 (328)
T ss_dssp EECTTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC----S---SCBCCCEECTTSEEEEEBCCB
T ss_pred EEcCCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc----C---CCccceEEcCCCCEEEEECCC
Confidence 65332 14567888 3444444433 488999999999876544322 2 3456789999999777743 3
Q ss_pred ----------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC
Q 001319 957 ----------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1026 (1101)
Q Consensus 957 ----------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1026 (1101)
+.|.++|..+++....+.... ......++|+||+++|+++.. .|.+||..+++..... +.
T Consensus 193 ~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~--g~~p~~la~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~----~~-- 262 (328)
T 3dsm_A 193 YEGSPYGYEAPSLYRIDAETFTVEKQFKFKL--GDWPSEVQLNGTRDTLYWINN--DIWRMPVEADRVPVRP----FL-- 262 (328)
T ss_dssp CTTCSSCBCCCEEEEEETTTTEEEEEEECCT--TCCCEEEEECTTSCEEEEESS--SEEEEETTCSSCCSSC----SB--
T ss_pred ccCCccccCCceEEEEECCCCeEEEEEecCC--CCCceeEEEecCCCEEEEEcc--EEEEEECCCCceeeee----ee--
Confidence 689999999999887765432 246889999999999988765 8999999988763211 00
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEE----ECCCeEEEEeCCCCCCccc
Q 001319 1027 SVLNGSQTVYPLVVAAHPLEPNQFAIG----LTDGSVKVMEPSESEGKWG 1072 (1101)
Q Consensus 1027 ~~~~h~~~~~~~~l~~~p~d~~~l~s~----~~Dg~v~iWd~~~~~~~~~ 1072 (1101)
......+.+++++|.++.++++. ..+++|.+||.. ++..+.
T Consensus 263 ----~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~ 307 (328)
T 3dsm_A 263 ----EFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDE 307 (328)
T ss_dssp ----CCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEE
T ss_pred ----cCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC-CCEEEE
Confidence 11134567899999767888887 678999999998 774333
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.58 E-value=1.9e-13 Score=167.27 Aligned_cols=248 Identities=8% Similarity=-0.019 Sum_probs=170.1
Q ss_pred CCCcEEEEEEecCCceEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
|...+.+++|||||++|+.+.+.+| .|++||+.+++.+.. .+ ....+..++|||||
T Consensus 123 ~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~------------------~~--~~~~~~~~~wspDg 182 (710)
T 2xdw_A 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VL--ERVKFSCMAWTHDG 182 (710)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EE--EEECSCCEEECTTS
T ss_pred CCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcc------------------cc--cCcccceEEEEeCC
Confidence 4457899999999997644433333 899999999876531 01 11236789999999
Q ss_pred CEEEEEECCCe----------------EEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecC-----Cce
Q 001319 419 NYVGVAFTKHL----------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKL 476 (1101)
Q Consensus 419 ~~las~~~d~~----------------i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~-----d~~ 476 (1101)
+.|+.++.++. |++|++.+++... .......|...+..++|+|||++ |+.++. +..
T Consensus 183 ~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~--l~~~~~~~~~~~~~ 260 (710)
T 2xdw_A 183 KGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRY--VLLSIREGCDPVNR 260 (710)
T ss_dssp SEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECSSSSCCE
T ss_pred CEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCE--EEEEEEccCCCccE
Confidence 99999988766 9999998876321 11122235666889999999995 443332 678
Q ss_pred EEEEE-cC------Cc-eeEEeecCCcCeEEEecccCCCccEEEEeccC----CeEEEEecCCCCe--eeeccCCC--Cc
Q 001319 477 IKVWE-LS------GR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGS--RVDYDAPG--HW 540 (1101)
Q Consensus 477 v~iwd-~~------~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~--~~~~~~~~--~~ 540 (1101)
|.+|| .+ +. ....+..+...+... |++ +|..|+..+.+ +.|.+||+.+... ...+..+. ..
T Consensus 261 l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~~-~s~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~ 337 (710)
T 2xdw_A 261 LWYCDLQQESNGITGILKWVKLIDNFEGEYDY-VTN--EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDV 337 (710)
T ss_dssp EEEEEGGGSSSSSCSSCCCEEEECSSSSCEEE-EEE--ETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE
T ss_pred EEEEECcccccccCCccceEEeeCCCCcEEEE-Eec--cCCEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCe
Confidence 99999 44 43 466777777666553 555 44555554432 3699999987642 22333333 36
Q ss_pred eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCC
Q 001319 541 CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDN 616 (1101)
Q Consensus 541 v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~ 616 (1101)
+..++|++++.++++... ++...|++|++.+++.++.+..+.. .+..++++|+++.++... ..+.|+.||+.+
T Consensus 338 ~~~~~~~~~~~lv~~~~~--~g~~~l~~~~~~~g~~~~~l~~~~~-~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~t 414 (710)
T 2xdw_A 338 LEWVACVRSNFLVLCYLH--DVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTK 414 (710)
T ss_dssp EEEEEEETTTEEEEEEEE--TTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTS
T ss_pred EEEEEEEcCCEEEEEEEE--CCEEEEEEEECCCCCEEEecCCCCc-eEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 888999877766666654 3345688889878887777777643 677788999988776542 457899999988
Q ss_pred Ce
Q 001319 617 VN 618 (1101)
Q Consensus 617 ~~ 618 (1101)
++
T Consensus 415 g~ 416 (710)
T 2xdw_A 415 EE 416 (710)
T ss_dssp SS
T ss_pred Cc
Confidence 76
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.58 E-value=6e-13 Score=140.75 Aligned_cols=242 Identities=11% Similarity=0.075 Sum_probs=179.5
Q ss_pred EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC-ccEEEEEEccCCCEEEEEECCCeEEEEeecC
Q 001319 359 LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP-ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 359 llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~-~~v~~~~~spdg~~las~~~d~~i~vwd~~~ 437 (1101)
++++++.++.|.+||.++|+.+.. +..+. ..+.+++++|+|++|+ +.++.|..||. +
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~-------------------~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~ 64 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWE-------------------YPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-D 64 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEE-------------------EECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-T
T ss_pred EEEeeCCCCEEEEEECCCCeEEEE-------------------eCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-C
Confidence 678999999999999989987653 33333 4688999999999998 45778999999 7
Q ss_pred Ccccccceeeecc-cCcEEEEEEecCCCceEEEEecC-CceEEEEEcCCceeEEeecC------CcCeEEEecccCCCcc
Q 001319 438 SNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVTCGD-DKLIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQ 509 (1101)
Q Consensus 438 ~~~~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s~~~-d~~v~iwd~~~~~~~~~~~h------~~~v~~v~~~~~~~~~ 509 (1101)
|+.+. .+..+ ...+.++.+.+||+ ++++.+. ++.|..+|.+|+.+..+... ......+++ ..+|+
T Consensus 65 G~~~W---~~~~~~~~~~~~~~~~~dG~--~lv~~~~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~--~~~G~ 137 (276)
T 3no2_A 65 GRELW---NIAAPAGCEMQTARILPDGN--ALVAWCGHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINK--NKKGN 137 (276)
T ss_dssp SCEEE---EEECCTTCEEEEEEECTTSC--EEEEEESTTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEE--CTTSC
T ss_pred CCEEE---EEcCCCCccccccEECCCCC--EEEEecCCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceE--CCCCC
Confidence 77665 34443 34788999999999 6777766 78888889889988776521 123334444 34778
Q ss_pred EEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC----
Q 001319 510 FIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK---- 585 (1101)
Q Consensus 510 ~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~---- 585 (1101)
++++...++.|..||.+ ++....+.... .+.++.+.++|+.++++.. ++.|..+|..+|+.+.++.....
T Consensus 138 ~lv~~~~~~~v~~~d~~-G~~~w~~~~~~-~~~~~~~~~~g~~~v~~~~----~~~v~~~d~~tG~~~w~~~~~~~~~~~ 211 (276)
T 3no2_A 138 YLVPLFATSEVREIAPN-GQLLNSVKLSG-TPFSSAFLDNGDCLVACGD----AHCFVQLNLESNRIVRRVNANDIEGVQ 211 (276)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEEECSS-CCCEEEECTTSCEEEECBT----TSEEEEECTTTCCEEEEEEGGGSBSCC
T ss_pred EEEEecCCCEEEEECCC-CCEEEEEECCC-CccceeEcCCCCEEEEeCC----CCeEEEEeCcCCcEEEEecCCCCCCcc
Confidence 99999999999999987 88888877653 4567788899999988764 66899999999999988864321
Q ss_pred -cceEEEEEeCCCCEEEEEeCC--------CcEEEEEC-CCCeeeEeeccCCCCCCCCee
Q 001319 586 -KSNGVVQFDTTQNHFLAVGED--------SQIKFWDM-DNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 586 -~~v~~~~~~~~~~~l~~~~~d--------g~i~iwd~-~~~~~~~~~~~~~~~~~v~~v 635 (1101)
..+..++..++|+.+++.... +..+++.+ .+++.+..+........+..+
T Consensus 212 l~~~~~~~~~~~G~i~v~~~~g~~~~~~~~~~~~~~~~~~~g~~~W~~~~~~~~~~~~~~ 271 (276)
T 3no2_A 212 LFFVAQLFPLQNGGLYICNWQGHDREAGKGKHPQLVEIDSEGKVVWQLNDKVKFGMISTI 271 (276)
T ss_dssp CSEEEEEEECTTSCEEEEEECTTCTTGGGSCCCSEEEECTTSBEEEEECCTTTSCCCCEE
T ss_pred ccccccceEcCCCCEEEEeccCccccccccCCceEEEECCCCCEEEEecCcccccceeee
Confidence 125678888999888776411 23345555 477888887766655555554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.58 E-value=4.6e-12 Score=140.15 Aligned_cols=201 Identities=10% Similarity=0.020 Sum_probs=142.6
Q ss_pred eEEEecCCCCeEEEEc---CCeEEEEECCCceEEEE-eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 808 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
..++++|||++|+++. ++.|.++| .+++.+.. +.... ++.+.|.+.+.+++.+.||++.+++. +++....
T Consensus 128 ~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~----~~~~~~~~~~~~~~~~~dg~~~~vd~-~g~~~~~ 201 (373)
T 2mad_H 128 WMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPT----CYHIHPGAPSTFYLLCAQGGLAKTDH-AGGAAGA 201 (373)
T ss_pred cceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCc----eEEEEeCCCceEEEEcCCCCEEEEEC-CCcEEEE
Confidence 4689999999988775 36799999 99998887 65322 24555635566777889999999999 8876633
Q ss_pred ec-----cCCCC-eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeec------CCCCCCCcceEEEcCCCCEE
Q 001319 884 LK-----GHQKR-ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 884 ~~-----~h~~~-V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l 951 (1101)
.. ....+ .....+.+++..++..+..+.|.+.|+.++.......+... .+..+.....++++||++.+
T Consensus 202 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~l 281 (373)
T 2mad_H 202 GLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGI 281 (373)
T ss_pred EeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEE
Confidence 21 11122 23356677766655555788999999976543211111111 11111334458899999988
Q ss_pred EEEe-----------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCceeEee
Q 001319 952 LVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 952 ~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~ 1018 (1101)
.+.. .+.|.++|..+++.+..+.. ......++|+|||+ +++++. .++.|.|||+.+++.+..+
T Consensus 282 yV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~----g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 282 YLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL----GHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred EEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC----CCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 8743 25799999999999999865 44689999999999 777776 5899999999999999884
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.58 E-value=1.1e-12 Score=142.21 Aligned_cols=205 Identities=11% Similarity=0.126 Sum_probs=144.9
Q ss_pred EeEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-ceEEE
Q 001319 807 VPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV-DEVKS 882 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~-~~~~~ 882 (1101)
...++|+|||+++.++. ++.|.++|+.+++.+.++.... . ...+.. +.+.+++.+.||++.+.++.+ ++...
T Consensus 139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g--~-~~~~P~-g~~~~~~~~~DG~~~~v~~~~~g~v~~ 214 (386)
T 3sjl_D 139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPD--C-YHIFPT-APDTFFMHCRDGSLAKVAFGTEGTPEI 214 (386)
T ss_dssp GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS--E-EEEEEE-ETTEEEEEETTSCEEEEECCSSSCCEE
T ss_pred CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCC--c-ceeecC-CCceeEEECCCCCEEEEECCCCCeEEE
Confidence 34588999999887764 4789999999999999886532 1 233433 566777888899999888876 55432
Q ss_pred eeccC----CCCee-EEEEc-CCCCEEEEEeCCCcEEEEECCCCccccceEEee------cCCCCCCCcceEEEcCCCCE
Q 001319 883 KLKGH----QKRIT-GLAFS-TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI------PAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 883 ~~~~h----~~~V~-~l~~s-~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~d~~~ 950 (1101)
....+ ..++. ..+|. ++|++++ .+.+|+|.+.|+.++.......+.. ..+-.+.....+++++++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~dG~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~ 293 (386)
T 3sjl_D 215 THTEVFHPEDEFLINHPAYSQKAGRLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDR 293 (386)
T ss_dssp EECCCCSCTTSCBCSCCEEETTTTEEEE-EBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTE
T ss_pred eecceeccccccccccceeEcCCCcEEE-EeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCe
Confidence 21111 12222 24664 6775544 6668999999998765322111110 11212245567899999999
Q ss_pred EEEEe-----------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCceeEe
Q 001319 951 MLVVH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCY 1017 (1101)
Q Consensus 951 l~~~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~ 1017 (1101)
+.+.. .+.|.++|+.+++.+..+.. ..++..++|++|++ +|+++. .++.|.|+|..+++.+.+
T Consensus 294 lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i~v----g~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~ 369 (386)
T 3sjl_D 294 IYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM----GHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRS 369 (386)
T ss_dssp EEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEE
T ss_pred EEEEeccccccccCCCCCEEEEEECCCCeEEEEEEC----CCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEE
Confidence 98853 25799999999999999887 45788999999997 666654 589999999999999998
Q ss_pred eCC
Q 001319 1018 IAP 1020 (1101)
Q Consensus 1018 ~~~ 1020 (1101)
+..
T Consensus 370 i~~ 372 (386)
T 3sjl_D 370 VNQ 372 (386)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1e-13 Score=168.99 Aligned_cols=247 Identities=10% Similarity=-0.054 Sum_probs=164.8
Q ss_pred ccCCccEEEEEEccCCCEEEEE-----ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCce-
Q 001319 403 KDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKL- 476 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~- 476 (1101)
.+|...+.+++|||||++||.+ +.+..|++||+.+++.+.. ..+... ....++|+|||+ .|+.++.|..
T Consensus 117 ~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~-~~~~~~--~~~~~~wspDg~--~l~~~~~d~~~ 191 (695)
T 2bkl_A 117 KDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKV-DVIEGG--KYATPKWTPDSK--GFYYEWLPTDP 191 (695)
T ss_dssp SSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSS-CCBSCC--TTCCCEECTTSS--EEEEEECCCCT
T ss_pred cCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCC-cccCcc--cccceEEecCCC--EEEEEEecCCC
Confidence 4577789999999999999944 4456899999999886511 011111 126899999999 6777777665
Q ss_pred ------------EEEEE-cCCc----eeEEeecCCcCeEEEecccCCCccEEEEeccCC----eEEEEecCCCCeeeecc
Q 001319 477 ------------IKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG----KIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 477 ------------v~iwd-~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~----~i~~wd~~~~~~~~~~~ 535 (1101)
|++|+ .++. .+.....|...+..+.|++ ||++|+.++.++ .|.+|+..++.. ..+.
T Consensus 192 ~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~l~~~~~~~~~~-~~l~ 268 (695)
T 2bkl_A 192 SIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSR--DGKYLFVYILRGWSENDVYWKRPGEKDF-RLLV 268 (695)
T ss_dssp TSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECT--TSCCEEEEEEETTTEEEEEEECTTCSSC-EEEE
T ss_pred CCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECC--CCCEEEEEEeCCCCceEEEEEcCCCCce-EEee
Confidence 99999 5554 3334445666788889877 667887777665 666676544433 3333
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee---EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEE
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iw 612 (1101)
.+...+....+ ++|. ++..+.....++.|.+||+.++.. ...+..+....+..++++ ++..+++...|+..++|
T Consensus 269 ~~~~~~~~~~~-~~g~-l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~lv~~~~~dg~~~l~ 345 (695)
T 2bkl_A 269 KGVGAKYEVHA-WKDR-FYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHLSLEYLKDATSEVR 345 (695)
T ss_dssp ECSSCCEEEEE-ETTE-EEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEEEEEEEETTEEEEE
T ss_pred cCCCceEEEEe-cCCc-EEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEEEEEEEECCEEEEE
Confidence 34444555556 6777 555443222468899999987753 333433324357778887 56677778889988887
Q ss_pred ECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc----CCcEEEEEcccc
Q 001319 613 DMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIG 661 (1101)
Q Consensus 613 d~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~ 661 (1101)
.+. +++....+..+. ...+..++++|++..++.... .++|++||+.++
T Consensus 346 ~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g 398 (695)
T 2bkl_A 346 VATLKGKPVRTVQLPG-VGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTG 398 (695)
T ss_dssp EEETTCCEEEECCCSS-SSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTC
T ss_pred EEeCCCCeeEEecCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 654 355555554332 235678889999987775433 468999998876
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.57 E-value=9.2e-12 Score=134.66 Aligned_cols=282 Identities=9% Similarity=-0.054 Sum_probs=192.7
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+...+.+++++|+|+ ++++...++.|.+||.. ++.... ....+...+.+++++++|.+.+
T Consensus 13 ~~~~~~~i~~d~~g~-l~v~~~~~~~v~~~d~~-~~~~~~------------------~~~~~~~~~~~i~~~~~g~l~v 72 (299)
T 2z2n_A 13 QDTGPYGITVSDKGK-VWITQHKANMISCINLD-GKITEY------------------PLPTPDAKVMCLTISSDGEVWF 72 (299)
T ss_dssp SSCCEEEEEECTTSC-EEEEETTTTEEEEECTT-CCEEEE------------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred cCCCccceEECCCCC-EEEEecCCCcEEEEcCC-CCeEEe------------------cCCcccCceeeEEECCCCCEEE
Confidence 456899999999998 55555557899999987 543220 1222456799999999999888
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE-eecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~h~~~v~~v~ 501 (1101)
+...++.|..||.+ ++ .... .+......+.++++.++|. ++++...++.|.+||.+++.... ...+...+..++
T Consensus 73 ~~~~~~~i~~~~~~-g~-~~~~-~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~d~~g~~~~~~~~~~~~~~~~i~ 147 (299)
T 2z2n_A 73 TENAANKIGRITKK-GI-IKEY-TLPNPDSAPYGITEGPNGD--IWFTEMNGNRIGRITDDGKIREYELPNKGSYPSFIT 147 (299)
T ss_dssp EETTTTEEEEECTT-SC-EEEE-ECSSTTCCEEEEEECTTSC--EEEEETTTTEEEEECTTCCEEEEECSSTTCCEEEEE
T ss_pred eCCCCCeEEEECCC-Cc-EEEE-eCCCcCCCceeeEECCCCC--EEEEecCCceEEEECCCCCEEEecCCCCCCCCceEE
Confidence 77778889999986 33 2211 2223455789999999998 67777778899999975554322 233445688888
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeee-ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
+.+ +|.+.++...++.|..||. +++.... .......+.+++++++|+..++.. ..+.|.+||. +++.....
T Consensus 148 ~~~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 219 (299)
T 2z2n_A 148 LGS--DNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEI----IGNKIGRITT-SGEITEFK 219 (299)
T ss_dssp ECT--TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred EcC--CCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEcc----CCceEEEECC-CCcEEEEE
Confidence 865 5667777777889999998 4443322 333345688999999998766653 2678999999 66644321
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
.......+..++++++|+.+++...++.|..||. +++. ..+....+...+.++++ ++|.+.++.. .+.+..++..+
T Consensus 220 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~~-~~~l~~~~~~~ 295 (299)
T 2z2n_A 220 IPTPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAME-CDKIGKLTLIK 295 (299)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEET-TTEEEEEEEC-
T ss_pred CCCCCCCceeEEECCCCCEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEec-CCcEEEEEcCc
Confidence 2212236788999999886666657889999998 4543 33332233346788999 8887766554 56677777654
Q ss_pred c
Q 001319 661 G 661 (1101)
Q Consensus 661 ~ 661 (1101)
.
T Consensus 296 ~ 296 (299)
T 2z2n_A 296 D 296 (299)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.57 E-value=7.5e-14 Score=170.27 Aligned_cols=248 Identities=7% Similarity=-0.066 Sum_probs=162.2
Q ss_pred CCCcEEEEEEecCCceEEEEE----eccCcEEEEecCCCcee-ccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRL-VSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg----~~d~~i~iwd~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
|...+.+++|||||++|+.+. +.+..|++||+.+++.+ .. .+.+. ....++||||
T Consensus 119 ~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~------------------~~~~~--~~~~~~wspD 178 (695)
T 2bkl_A 119 GTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVD------------------VIEGG--KYATPKWTPD 178 (695)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSC------------------CBSCC--TTCCCEECTT
T ss_pred CCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCc------------------ccCcc--cccceEEecC
Confidence 555799999999999764443 33468999999998764 10 01111 1267999999
Q ss_pred CCEEEEEECCCe-------------EEEEeecCCccc-ccceeeecccCcEEEEEEecCCCceEEEEecCCc----eEEE
Q 001319 418 GNYVGVAFTKHL-------------IQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKV 479 (1101)
Q Consensus 418 g~~las~~~d~~-------------i~vwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~----~v~i 479 (1101)
|+.|+.++.|.. |++|++.++... ..+.....|...+..+.|+|||++ |+.++.++ .|.+
T Consensus 179 g~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~l~~ 256 (695)
T 2bkl_A 179 SKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKY--LFVYILRGWSENDVYW 256 (695)
T ss_dssp SSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCC--EEEEEEETTTEEEEEE
T ss_pred CCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCE--EEEEEeCCCCceEEEE
Confidence 999999998776 999999987632 112233346678999999999995 44444333 6777
Q ss_pred EEcCCceeEEeecCCcCeEEEecccCCCccEEEEec---cCCeEEEEecCCCCe---eeeccCC-CCceEEEEEccCCCE
Q 001319 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGS---RVDYDAP-GHWCTTMLYSADGSR 552 (1101)
Q Consensus 480 wd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~---~~~~~~~-~~~v~~~~~s~d~~~ 552 (1101)
||..+.....+..+...+....+ + +|.+++.+. .++.|.+||+.++.. ...+..+ ...+..++++ ++..
T Consensus 257 ~~~~~~~~~~l~~~~~~~~~~~~-~--~g~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~-~~~l 332 (695)
T 2bkl_A 257 KRPGEKDFRLLVKGVGAKYEVHA-W--KDRFYVLTDEGAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV-GGHL 332 (695)
T ss_dssp ECTTCSSCEEEEECSSCCEEEEE-E--TTEEEEEECTTCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE-TTEE
T ss_pred EcCCCCceEEeecCCCceEEEEe-c--CCcEEEEECCCCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE-CCEE
Confidence 77433345566666666666655 3 344444444 258899999987653 2223222 4467888887 5666
Q ss_pred EEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCee
Q 001319 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1101)
+++... ++...|+++++. ++..+.+..+....+..++++|+++.++... ..++|++||+.+++.
T Consensus 333 v~~~~~--dg~~~l~~~~~~-g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~~ 400 (695)
T 2bkl_A 333 SLEYLK--DATSEVRVATLK-GKPVRTVQLPGVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGKS 400 (695)
T ss_dssp EEEEEE--TTEEEEEEEETT-CCEEEECCCSSSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCCE
T ss_pred EEEEEE--CCEEEEEEEeCC-CCeeEEecCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 666654 223344444543 5555666555343566778889988777433 457899999988764
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.56 E-value=1e-12 Score=141.84 Aligned_cols=235 Identities=12% Similarity=0.048 Sum_probs=165.9
Q ss_pred cccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 402 FKDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
+..+.....+++|+|+|+ +++++..++.|..||..++ .. .+..+...+.+++|+++|+ ++++...++.|.+|
T Consensus 23 l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~---~~~~~~~~~~~l~~~~dg~--l~v~~~~~~~i~~~ 95 (296)
T 3e5z_A 23 LADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LS---PEMHPSHHQNGHCLNKQGH--LIACSHGLRRLERQ 95 (296)
T ss_dssp EECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EE---EEESSCSSEEEEEECTTCC--EEEEETTTTEEEEE
T ss_pred EecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eE---EEECCCCCcceeeECCCCc--EEEEecCCCeEEEE
Confidence 444566788999999998 7778888999999999986 33 4556778899999999998 67777778899999
Q ss_pred E-cCCceeEEeecC----CcCeEEEecccCCCccEEEE----ecc-------------CCeEEEEecCCCCeeeeccCCC
Q 001319 481 E-LSGRKLFNFEGH----EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 481 d-~~~~~~~~~~~h----~~~v~~v~~~~~~~~~~l~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
| .+|+........ ...+..+++.+ +|.++++ ++. .+.|..++.. .....+....
T Consensus 96 d~~~g~~~~~~~~~~~~~~~~~~~i~~d~--~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~--g~~~~~~~~~ 171 (296)
T 3e5z_A 96 REPGGEWESIADSFEGKKLNSPNDVCLAP--DGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD--GTLSAPIRDR 171 (296)
T ss_dssp CSTTCCEEEEECEETTEECCCCCCEEECT--TSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT--SCEEEEECCC
T ss_pred cCCCCcEEEEeeccCCCCCCCCCCEEECC--CCCEEEECCccccccccccccccccCCCcEEEEECCC--CCEEEeecCC
Confidence 9 577754333221 12456788865 6677776 331 2345555443 3334444455
Q ss_pred CceEEEEEccCCCEEEEeecCCCCCceEEEEeCC-CCee---EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES-EGTI---KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~-~~~~---~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
.....++|+|+|+.+++.. .++.|++|++. +++. ...+ ......+..++++++|+.+++. ++.|.+|+.
T Consensus 172 ~~~~gi~~s~dg~~lv~~~----~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~ 244 (296)
T 3e5z_A 172 VKPNGLAFLPSGNLLVSDT----GDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTP 244 (296)
T ss_dssp SSEEEEEECTTSCEEEEET----TTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECT
T ss_pred CCCccEEECCCCCEEEEeC----CCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECC
Confidence 5678999999999985543 36789999986 5554 3444 2222345679999999866655 889999998
Q ss_pred CCCeeeEeeccCCCCCCCCeeEE-ecCCCEEEEEEcCCcEEEEEcc
Q 001319 615 DNVNILTSTDAEGGLPNLPRLRF-SKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~-s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
. ++.+..+..+.. +.+++| +|+++.|++++.++ +..++..
T Consensus 245 ~-g~~~~~~~~~~~---~~~~~f~~~d~~~L~v~t~~~-l~~~~~~ 285 (296)
T 3e5z_A 245 D-GDELGRVLTPQT---TSNLCFGGPEGRTLYMTVSTE-FWSIETN 285 (296)
T ss_dssp T-SCEEEEEECSSC---CCEEEEESTTSCEEEEEETTE-EEEEECS
T ss_pred C-CCEEEEEECCCC---ceeEEEECCCCCEEEEEcCCe-EEEEEcc
Confidence 6 777777765432 789999 58999999988763 3333443
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-13 Score=144.38 Aligned_cols=269 Identities=11% Similarity=-0.024 Sum_probs=184.3
Q ss_pred ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccc
Q 001319 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444 (1101)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~ 444 (1101)
.++.|.+||..+++..... +. ...-.........+++. +++..++...++.|.+||..+++.+..
T Consensus 15 ~~~~l~~~d~~t~~~~~~i----~~---------~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~- 79 (328)
T 3dsm_A 15 SNATLSYYDPATCEVENEV----FY---------RANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGR- 79 (328)
T ss_dssp CCBEEEEEETTTTEEECSH----HH---------HHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEE-
T ss_pred CCceEEEEECCCCEEhhhh----Hh---------hhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEE-
Confidence 3889999999998765420 00 00001122456777774 455555556678999999999987663
Q ss_pred eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC-----cCeEEEecccCCCccEEEEec-cC
Q 001319 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE-----APVYSICPHHKENIQFIFSTA-ID 517 (1101)
Q Consensus 445 ~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~-----~~v~~v~~~~~~~~~~l~s~~-~d 517 (1101)
+. .......++++++++ ++++...++.|.+|| .+++....+.... .....+++ . ++.++++.. .+
T Consensus 80 --i~-~~~~p~~i~~~~~g~--lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~-~~~lyv~~~~~~ 151 (328)
T 3dsm_A 80 --IT-GFTSPRYIHFLSDEK--AYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--Y-GKYVYVNCWSYQ 151 (328)
T ss_dssp --EE-CCSSEEEEEEEETTE--EEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--E-TTEEEEEECTTC
T ss_pred --cC-CCCCCcEEEEeCCCe--EEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--E-CCEEEEEcCCCC
Confidence 33 346689999999986 666665799999999 7777776665433 13456666 2 334444443 48
Q ss_pred CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC------CceEEEEeCCCCeeEEEecccCCcceEEE
Q 001319 518 GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG------DSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1101)
Q Consensus 518 ~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~------~~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 591 (1101)
+.|.+||..+.+....+... .....++++++|++++++....+. .+.|.++|..+++....+..........+
T Consensus 152 ~~v~viD~~t~~~~~~i~~g-~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~l 230 (328)
T 3dsm_A 152 NRILKIDTETDKVVDELTIG-IQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEV 230 (328)
T ss_dssp CEEEEEETTTTEEEEEEECS-SCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEE
T ss_pred CEEEEEECCCCeEEEEEEcC-CCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeE
Confidence 89999999988776665543 345788999999977766431000 26899999999998877764433357889
Q ss_pred EEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec-CCCEEEEE----EcCCcEEEEEcc
Q 001319 592 QFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK-EGNLLAVT----TADNGFKILANA 659 (1101)
Q Consensus 592 ~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~-~g~~l~~~----~~d~~i~iwd~~ 659 (1101)
+++|++++++++.. .|.+||..+++................++++| ++.+.++. ..++.|.+||..
T Consensus 231 a~~~d~~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~vdp~~g~lyva~~~~y~~~~~V~v~d~~ 301 (328)
T 3dsm_A 231 QLNGTRDTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLTVNPNNGEVYVADAIDYQQQGIVYRYSPQ 301 (328)
T ss_dssp EECTTSCEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEEECTTTCCEEEEECTTSSSEEEEEEECTT
T ss_pred EEecCCCEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEEEcCCCCeEEEEcccccccCCEEEEECCC
Confidence 99999999988765 89999998887642211111122467899999 45555554 467899999987
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.55 E-value=2.1e-12 Score=139.89 Aligned_cols=301 Identities=12% Similarity=0.057 Sum_probs=199.5
Q ss_pred ccCCCccEEEEecc-----CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC------CCCCceEEEEeC
Q 001319 503 HHKENIQFIFSTAI-----DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGDSFLVEWNE 571 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~-----d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~------~~~~~~i~iwd~ 571 (1101)
.|.+++..+++... ++.|.+.|..+.+....+.....+ . ++++|||++++++... +..++.|.+||.
T Consensus 39 ~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~ 116 (386)
T 3sjl_D 39 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDP 116 (386)
T ss_dssp CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred ccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEEC
Confidence 34557777777765 679999999998888777655554 4 9999999998876520 012567999999
Q ss_pred CCCeeEEEecccC------CcceEEEEEeCCCCEEEEEeC--CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCE
Q 001319 572 SEGTIKRTYAGFR------KKSNGVVQFDTTQNHFLAVGE--DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNL 643 (1101)
Q Consensus 572 ~~~~~~~~~~~~~------~~~v~~~~~~~~~~~l~~~~~--dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~ 643 (1101)
.+.+.+.++.... +.....++|+|||++++++.. ++.|.++|+.+++.+.++...+. ...+....+.
T Consensus 117 ~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~-----~~~~P~g~~~ 191 (386)
T 3sjl_D 117 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC-----YHIFPTAPDT 191 (386)
T ss_dssp TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE-----EEEEEEETTE
T ss_pred CCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc-----ceeecCCCce
Confidence 9999988875422 113445899999999998863 68999999999999998865321 2233334567
Q ss_pred EEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCC
Q 001319 644 LAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSG 723 (1101)
Q Consensus 644 l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 723 (1101)
+++.+.||.+.+.++.+..........
T Consensus 192 ~~~~~~DG~~~~v~~~~~g~v~~~~~~----------------------------------------------------- 218 (386)
T 3sjl_D 192 FFMHCRDGSLAKVAFGTEGTPEITHTE----------------------------------------------------- 218 (386)
T ss_dssp EEEEETTSCEEEEECCSSSCCEEEECC-----------------------------------------------------
T ss_pred eEEECCCCCEEEEECCCCCeEEEeecc-----------------------------------------------------
Confidence 778888888888777542111000000
Q ss_pred CeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCC
Q 001319 724 QCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNL 803 (1101)
Q Consensus 724 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 803 (1101)
.+++ .
T Consensus 219 -------------------------------------------------------------~~~~--------------~ 223 (386)
T 3sjl_D 219 -------------------------------------------------------------VFHP--------------E 223 (386)
T ss_dssp -------------------------------------------------------------CCSC--------------T
T ss_pred -------------------------------------------------------------eecc--------------c
Confidence 0000 0
Q ss_pred CCCE-eEEEe-cCCCCeEEEEcCCeEEEEECCCce--EEEEee---------C-CCCCeeEEEEecCCCCEEEEEeC---
Q 001319 804 EEAV-PCIAL-SKNDSYVMSATGGKISLFNMMTFK--VMTTFM---------S-PPPASTFLAFHPQDNNIIAIGTE--- 866 (1101)
Q Consensus 804 ~~~v-~~~~~-s~dg~~la~~~dg~i~vwd~~~~~--~~~~~~---------~-~~~~i~~l~~s~~~~~~la~g~~--- 866 (1101)
..++ ....| .++|+++....+|++.+.|+.+.. ....+. + ..+....+++++ +++.+.+...
T Consensus 224 ~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~-~~~~lyV~~~~~~ 302 (386)
T 3sjl_D 224 DEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHR-ALDRIYLLVDQRD 302 (386)
T ss_dssp TSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEET-TTTEEEEEEEECC
T ss_pred cccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECC-CCCeEEEEecccc
Confidence 0000 01133 367766666567888888886553 222221 0 123455688898 6666666542
Q ss_pred -------CCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCC-EEEEE-eCCCcEEEEECCCCccccceEEeecCCCCCC
Q 001319 867 -------DSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLN-ILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 937 (1101)
Q Consensus 867 -------dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~-~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 937 (1101)
.++|.++|+.+++.+..+..- .++..|++++|++ +|++. ..++.|.++|..+++.+...... .
T Consensus 303 ~~~hk~~~~~V~viD~~t~kv~~~i~vg-~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~~~-------~ 374 (386)
T 3sjl_D 303 EWRHKTASRFVVVLDAKTGERLAKFEMG-HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVNQL-------G 374 (386)
T ss_dssp TTCTTSCEEEEEEEETTTCCEEEEEEEE-EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEECCC-------C
T ss_pred ccccCCCCCEEEEEECCCCeEEEEEECC-CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEecCC-------C
Confidence 257999999999999887632 3688999999997 66664 55899999999998866544322 3
Q ss_pred CcceEEEcCC
Q 001319 938 GDTRVQFNAD 947 (1101)
Q Consensus 938 ~v~~~~~s~d 947 (1101)
....+.+++|
T Consensus 375 ~p~~l~~s~d 384 (386)
T 3sjl_D 375 HGPQVITTAD 384 (386)
T ss_dssp SSCCEEEECC
T ss_pred CCceeEECCc
Confidence 4456666665
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.55 E-value=1.2e-08 Score=126.14 Aligned_cols=558 Identities=11% Similarity=0.026 Sum_probs=317.9
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeec--------ccCcEEEEEEecCCCceEEEEecCCceE
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA--------HVGAVNDLAFAYPNKLLCVVTCGDDKLI 477 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~--------h~~~V~~l~~s~d~~~~~l~s~~~d~~v 477 (1101)
...|.+|.-.++|. |-.|..+| +..||-.. .+.+.. .. ....|.++...++|. .|..|+.++-+
T Consensus 18 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~---f~~~~~-~~~~~~~~~l~~n~I~~i~~d~~g~--~lWigt~~~Gl 89 (781)
T 3v9f_A 18 NNYVLSITQDKQGF-LWFATEEG-LNKFDGTR---FITYYK-EEQSSSVQSITGNELNEVYTDPVQP--VIWIATQRAGL 89 (781)
T ss_dssp CSBEEEEEECTTSC-EEEEESSC-EEEECSSS---EEEECC-CSSCSSSCCCSCSCEEEEEECSSSS--EEEEEESSSCE
T ss_pred cCEeEEEEECCCCC-EEEccCCc-CccccCCc---eEEEEc-CCCCCccccccccccceEEEcCCCC--EEEEEeCCCCc
Confidence 45899999888875 66777887 67777443 221111 11 123588998887776 25556666578
Q ss_pred EEEE-cCCceeEEeec--------CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc-----CCCCceEE
Q 001319 478 KVWE-LSGRKLFNFEG--------HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD-----APGHWCTT 543 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~--------h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~-----~~~~~v~~ 543 (1101)
..|| .+++. ..+.. ....|.++......++ .|..++.++.|..||..+........ .....|.+
T Consensus 90 ~~~d~~~~~f-~~~~~~~~~~~~l~~~~i~~i~~d~~~~g-~lwi~t~~~gl~~~~~~~~~~~~~~~~~~~~l~~~~i~~ 167 (781)
T 3v9f_A 90 NAYNYETQSF-SVYQYNPEDPQSLITNDVTHITSSVQAGK-GLWVCTYYRGIEYLDIATGKFTHYNKSTVPALPSEQTWT 167 (781)
T ss_dssp EEEETTTTEE-EEECCCTTCSSSCSCSCEEEEEECSSTTS-EEEEEESSSCEEEEETTTTEEEEESTTTCTTCSCCCEEE
T ss_pred ceECCCCCeE-EeeccccCCCCCcccCcceEEEecCccCC-CEEEEECCCCeeEEECCCCeEEeeccCcccCCCccceEE
Confidence 9999 54443 33311 1235777765321134 45556655668888876554332211 12345888
Q ss_pred EEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc------cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCC
Q 001319 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNV 617 (1101)
Q Consensus 544 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~ 617 (1101)
+...++|...+.. . .+-|..||..+++....... .....+.++...+++...+ |+.+ -+.+||..++
T Consensus 168 i~~d~~g~lwigt-~----~~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lwi-gt~~-Gl~~~d~~~~ 240 (781)
T 3v9f_A 168 ATEAEDGKLYIGH-V----EGGLSILSLNDKSVKHFVHDPQNPNSLPGNDVRCIYKDTNGNIWI-GTSK-GLALFNANTE 240 (781)
T ss_dssp EEEEETTEEEEEE-T----TTEEEEEETTTTEEEEECC--------CCSSEEEEEECTTCCEEE-EETT-EEEEEETTTT
T ss_pred EEECCCCCEEEEe-c----CCCeEEEcCCCCceEeeecCCCCcccCCCCceeEEEEcCCCCEEE-EeCC-cHheECCCCC
Confidence 8888888766543 2 33588899888765432211 1123577788877776544 4555 6899998776
Q ss_pred eeeEeeccC-----CCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccc
Q 001319 618 NILTSTDAE-----GGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1101)
Q Consensus 618 ~~~~~~~~~-----~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 692 (1101)
+........ -....|.++...++|. |.+|+..+-|.+++..+.. +.......+. .+.-..+.
T Consensus 241 ~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~--~~~~~~~~f~-------~~~~~~~~--- 307 (781)
T 3v9f_A 241 TFTNFHNNPGNIHGALSSYIFSIKQLKDNK-LWIATELNGIMILDLQQNQ--FLLPEQIRFE-------FIREGDNN--- 307 (781)
T ss_dssp EEEC-----------CCCCEEEEEECTTSE-EEEEESSSCEEEEETTCC-----------CE-------EECBCSST---
T ss_pred cEEEEEcCCCccccccCceEEEEEECCCCC-EEEEeCCCCeEEECCCCCe--eeeeeccccc-------cccCCCCC---
Confidence 544322111 1123578888877775 5556665677888876541 1111000000 00000000
Q ss_pred cccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCC
Q 001319 693 VSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQN 772 (1101)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~ 772 (1101)
.......|.++....+|. +..++.++-+..++.....+
T Consensus 308 ----------------------------------------~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~- 345 (781)
T 3v9f_A 308 ----------------------------------------YSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTF- 345 (781)
T ss_dssp ----------------------------------------TSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSC-
T ss_pred ----------------------------------------CCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcc-
Confidence 011445678888888876 66666566666665432111
Q ss_pred CCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEe---eCCCCCee
Q 001319 773 PSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTF---MSPPPAST 849 (1101)
Q Consensus 773 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~---~~~~~~i~ 849 (1101)
..+...... .....-....|.+++..++|.+.+...++.|..||..++...... ......|.
T Consensus 346 -----------~~~~~~~~~----~~~~~l~~~~v~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~ 410 (781)
T 3v9f_A 346 -----------HTWSYSPTQ----MNESSLSNKVVSSVCDDGQGKLWIGTDGGGINVFENGKRVAIYNKENRELLSNSVL 410 (781)
T ss_dssp -----------EEEC----C----CCSSCCSSSCEEEEEECTTSCEEEEEBSSCEEEEETTEEEEECC-----CCCSBEE
T ss_pred -----------eeeccCccc----cccCCCCCcceEEEEEcCCCCEEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceE
Confidence 000000000 000001345699999998888776655677999998765433211 12345688
Q ss_pred EEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec--cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE
Q 001319 850 FLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 850 ~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~--~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 927 (1101)
+++..+ ++.+. +|+.++-+..++..+++...... .....|.++...++|.+.+ |+. +-|..||..+++......
T Consensus 411 ~i~~d~-~g~lW-igt~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lwi-gt~-~Gl~~~~~~~~~~~~~~~ 486 (781)
T 3v9f_A 411 CSLKDS-EGNLW-FGTYLGNISYYNTRLKKFQIIELEKNELLDVRVFYEDKNKKIWI-GTH-AGVFVIDLASKKVIHHYD 486 (781)
T ss_dssp EEEECT-TSCEE-EEETTEEEEEECSSSCEEEECCSTTTCCCCEEEEEECTTSEEEE-EET-TEEEEEESSSSSCCEEEC
T ss_pred EEEECC-CCCEE-EEeccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEECCCCCEEE-EEC-CceEEEeCCCCeEEeccc
Confidence 888877 66654 57776779999987776543221 2346799999988876555 444 458899988765432111
Q ss_pred EeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
.. ........+.++...++|.+.+...++.+..|+..+++..............|.++...++|.+.++.. +|.|..|
T Consensus 487 ~~-~~~~~~~~i~~i~~d~~g~lWigt~~~Gl~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~T~-~Glv~~~ 564 (781)
T 3v9f_A 487 TS-NSQLLENFVRSIAQDSEGRFWIGTFGGGVGIYTPDMQLVRKFNQYEGFCSNTINQIYRSSKGQMWLATG-EGLVCFP 564 (781)
T ss_dssp TT-TSSCSCSCEEEEEECTTCCEEEEESSSCEEEECTTCCEEEEECTTTTCSCSCEEEEEECTTSCEEEEET-TEEEEES
T ss_pred Cc-ccccccceeEEEEEcCCCCEEEEEcCCCEEEEeCCCCeEEEccCCCCCCCCeeEEEEECCCCCEEEEEC-CCceEEE
Confidence 00 001112568889999999988877666788899877654332221111256799999999998666544 6655889
Q ss_pred eCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1008 DADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1008 d~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
|..+++... +.....++ ... +.++...+ ++.+.+++ .+| |..++..+.+
T Consensus 565 d~~~~~~~~-~~~~~gl~------~~~--i~~i~~d~-~g~lW~~t-~~G-l~~~~~~~~~ 613 (781)
T 3v9f_A 565 SARNFDYQV-FQRKEGLP------NTH--IRAISEDK-NGNIWAST-NTG-ISCYITSKKC 613 (781)
T ss_dssp CTTTCCCEE-ECGGGTCS------CCC--CCEEEECS-SSCEEEEC-SSC-EEEEETTTTE
T ss_pred CCCCCcEEE-ccccCCCC------Cce--EEEEEECC-CCCEEEEc-CCc-eEEEECCCCc
Confidence 988776432 22111111 112 23566666 56666654 333 6777766544
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=4.8e-11 Score=128.97 Aligned_cols=281 Identities=9% Similarity=0.076 Sum_probs=191.8
Q ss_pred CcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 736 TSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 736 ~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
....+.++++.++|..+++...++.+..|+.. +........ .....+.+++++++
T Consensus 13 ~~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-----------------------~~~~~~~~~--~~~~~~~~i~~~~~ 67 (299)
T 2z2n_A 13 QDTGPYGITVSDKGKVWITQHKANMISCINLD-----------------------GKITEYPLP--TPDAKVMCLTISSD 67 (299)
T ss_dssp SSCCEEEEEECTTSCEEEEETTTTEEEEECTT-----------------------CCEEEEECS--STTCCEEEEEECTT
T ss_pred cCCCccceEECCCCCEEEEecCCCcEEEEcCC-----------------------CCeEEecCC--cccCceeeEEECCC
Confidence 45678999999999866666667888888643 111111111 13456889999999
Q ss_pred CCeEEEEc-CCeEEEEECCCceEE-EEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe-eccCCCCee
Q 001319 816 DSYVMSAT-GGKISLFNMMTFKVM-TTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK-LKGHQKRIT 892 (1101)
Q Consensus 816 g~~la~~~-dg~i~vwd~~~~~~~-~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~-~~~h~~~V~ 892 (1101)
|.+.++.. ++.|..||.. ++.. ..+......+..+++.+ ++.++++...++.|.+||. +++.... ...+...+.
T Consensus 68 g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~-~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~ 144 (299)
T 2z2n_A 68 GEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGP-NGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPS 144 (299)
T ss_dssp SCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECT-TSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEE
T ss_pred CCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECC-CCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCc
Confidence 99888876 7889999986 4332 22223455789999999 8888887777889999998 5554332 333456789
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeee
Q 001319 893 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIR 971 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~ 971 (1101)
++++.++|+.+++...++.|..||. +++... .... .. ...+..++++++|.+.++.. ++.|.+|+. +++...
T Consensus 145 ~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~---~~~~-~~-~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~ 217 (299)
T 2z2n_A 145 FITLGSDNALWFTENQNNAIGRITE-SGDITE---FKIP-TP-ASGPVGITKGNDDALWFVEIIGNKIGRITT-SGEITE 217 (299)
T ss_dssp EEEECTTSCEEEEETTTTEEEEECT-TCCEEE---EECS-ST-TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEE
T ss_pred eEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEE---eeCC-CC-CCcceeEEECCCCCEEEEccCCceEEEECC-CCcEEE
Confidence 9999999988887777889999998 554321 1111 11 24577899999999766653 789999999 665433
Q ss_pred EeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE
Q 001319 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA 1051 (1101)
Q Consensus 972 ~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~ 1051 (1101)
+... .+...+.+++++++|+++++...++.|.+||. ++... .+.. ......+.++++ + ++.+++
T Consensus 218 -~~~~-~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~-~~~~----------~~~~~~~~~i~~-~-~g~l~v 281 (299)
T 2z2n_A 218 -FKIP-TPNARPHAITAGAGIDLWFTEWGANKIGRLTS-NNIIE-EYPI----------QIKSAEPHGICF-D-GETIWF 281 (299)
T ss_dssp -EECS-STTCCEEEEEECSTTCEEEEETTTTEEEEEET-TTEEE-EEEC----------SSSSCCEEEEEE-C-SSCEEE
T ss_pred -EECC-CCCCCceeEEECCCCCEEEeccCCceEEEECC-CCceE-EEeC----------CCCCCccceEEe-c-CCCEEE
Confidence 3221 12567999999999997777667889999998 45433 2221 011224567888 6 677777
Q ss_pred EEECCCeEEEEeCCCCC
Q 001319 1052 IGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1052 s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.. .+.+..++..+++
T Consensus 282 ~~~-~~~l~~~~~~~~~ 297 (299)
T 2z2n_A 282 AME-CDKIGKLTLIKDN 297 (299)
T ss_dssp EET-TTEEEEEEEC---
T ss_pred Eec-CCcEEEEEcCccc
Confidence 655 6778888876643
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.54 E-value=1.2e-12 Score=139.17 Aligned_cols=240 Identities=7% Similarity=-0.062 Sum_probs=166.9
Q ss_pred cEEEEEEecCCceEEE-EEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 346 TVISMDFHPSHQTLLL-VGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 346 ~V~~v~fspdg~~lla-sg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
...+++++|+|+ +++ +.+.++.|.+||..++.... ....+...+.+++++++|+++++.
T Consensus 25 ~p~~i~~~~~g~-l~v~~~~~~~~i~~~~~~~~~~~~-------------------~~~~~~~~p~~i~~~~~g~l~v~~ 84 (270)
T 1rwi_B 25 SPSGVAVDSAGN-VYVTSEGMYGRVVKLATGSTGTTV-------------------LPFNGLYQPQGLAVDGAGTVYVTD 84 (270)
T ss_dssp CEEEEEECTTCC-EEEEECSSSCEEEEECC-----EE-------------------CCCCSCCSCCCEEECTTCCEEEEE
T ss_pred CccceEECCCCC-EEEEccCCCCcEEEecCCCcccce-------------------EeeCCcCCcceeEECCCCCEEEEc
Confidence 789999999998 666 54678899999976544221 011233567889999999966655
Q ss_pred ECCCeEEEEeecCCcccccceeee-cccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEec
Q 001319 425 FTKHLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICP 502 (1101)
Q Consensus 425 ~~d~~i~vwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~ 502 (1101)
. ++.|.+||..++.... +. .....+..++++++|+ ++++...++.|.+|+ .+.............+.++++
T Consensus 85 ~-~~~i~~~d~~~~~~~~----~~~~~~~~p~~i~~~~~g~--l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~ 157 (270)
T 1rwi_B 85 F-NNRVVTLAAGSNNQTV----LPFDGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAV 157 (270)
T ss_dssp T-TTEEEEECTTCSCCEE----CCCCSCSSEEEEEECTTCC--EEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEE
T ss_pred C-CCEEEEEeCCCceEee----eecCCcCCCcceEECCCCC--EEEEECCCCEEEEEECCCceeEeeccccCCCceeEEE
Confidence 5 8899999987754321 21 2335789999999998 677777788999998 444333222233345778888
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
.+ +|.++++...++.|.+||................+.+++++++|...++.. .++.|.+||............
T Consensus 158 ~~--~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~~~~~~~~~~~ 231 (270)
T 1rwi_B 158 DN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEH----NTNQVVKLLAGSTTSTVLPFT 231 (270)
T ss_dssp CT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEET----TTSCEEEECTTCSCCEECCCC
T ss_pred eC--CCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEEC----CCCcEEEEcCCCCcceeeccC
Confidence 66 567777777789999999877655443333335688999999997666654 367899999876554332222
Q ss_pred cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCee
Q 001319 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNI 619 (1101)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 619 (1101)
+ ...+..++++++|+.+++...++.|+++++...+.
T Consensus 232 ~-~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~ 267 (270)
T 1rwi_B 232 G-LNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH 267 (270)
T ss_dssp S-CSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred C-CCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence 2 13578899999998878888899999999876543
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.52 E-value=2.1e-12 Score=137.36 Aligned_cols=239 Identities=8% Similarity=0.021 Sum_probs=168.5
Q ss_pred CEeEEEecCCCCeEE-EEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 806 AVPCIALSKNDSYVM-SAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la-~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
...+++++++|++++ +.. ++.|.+||..+.........+...+.++++++ +++++++.. ++.|++||.........
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~-~g~l~v~~~-~~~i~~~d~~~~~~~~~ 102 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDF-NNRVVTLAAGSNNQTVL 102 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC-----EECCCCSCCSCCCEEECT-TCCEEEEET-TTEEEEECTTCSCCEEC
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcccceEeeCCcCCcceeEECC-CCCEEEEcC-CCEEEEEeCCCceEeee
Confidence 678999999999777 434 68899999866544332223345688999999 778666655 88999999876543322
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEE
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIY 962 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~ 962 (1101)
.......+.+++++++|+.+++...++.|.+|+..+..... ..... ......++++++|+++++.. ++.|.+|
T Consensus 103 ~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~-----~~~~~-~~~p~~i~~~~~g~l~v~~~~~~~i~~~ 176 (270)
T 1rwi_B 103 PFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTV-----LPFTG-LNDPDGVAVDNSGNVYVTDTDNNRVVKL 176 (270)
T ss_dssp CCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEE-----CCCCS-CCSCCCEEECTTCCEEEEEGGGTEEEEE
T ss_pred ecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEe-----ecccc-CCCceeEEEeCCCCEEEEECCCCEEEEE
Confidence 22333678999999999988887788899999765533211 11111 14678899999998666654 6899999
Q ss_pred EcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEE
Q 001319 963 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1042 (1101)
Q Consensus 963 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~ 1042 (1101)
+............. ...+..++++++|.++++...++.|.+||..+..... .. ......+.++++
T Consensus 177 ~~~~~~~~~~~~~~---~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~-~~-----------~~~~~~p~~i~~ 241 (270)
T 1rwi_B 177 EAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----------FTGLNTPLAVAV 241 (270)
T ss_dssp CTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEE-CC-----------CCSCSCEEEEEE
T ss_pred ecCCCceEeecccC---CCCceEEEECCCCCEEEEECCCCcEEEEcCCCCccee-ec-----------cCCCCCceeEEE
Confidence 98876654332221 3678999999999877777788999999987654332 11 112235678999
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1043 HPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1043 ~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
++ +++++++...+++|.++++...+
T Consensus 242 ~~-~g~l~v~~~~~~~v~~~~~~~~~ 266 (270)
T 1rwi_B 242 DS-DRTVYVADRGNDRVVKLTSLEHH 266 (270)
T ss_dssp CT-TCCEEEEEGGGTEEEEECCCGGG
T ss_pred CC-CCCEEEEECCCCEEEEEcCCCcc
Confidence 99 68899999999999999988765
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.50 E-value=6.7e-12 Score=138.83 Aligned_cols=204 Identities=13% Similarity=0.132 Sum_probs=144.8
Q ss_pred eEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe-
Q 001319 808 PCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK- 883 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~- 883 (1101)
..++|+|||+++.++. ++.|.+.|+.+++.+.++..... ....|.+...+++.+.||++.+.+..+++....
T Consensus 180 ~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~----~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~ 255 (426)
T 3c75_H 180 WMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDC----YHIFPASPTVFYMNCRDGSLARVDFADGETKVTN 255 (426)
T ss_dssp GGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE----EEEEEEETTEEEEEETTSSEEEEECCTTCCEEEE
T ss_pred ceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCCc----eeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEe
Confidence 3578999999888764 46899999999999988875221 233442446666777888888888866554422
Q ss_pred ---eccCCCCe-eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeec------CCCCCCCcceEEEcCCCCEEEE
Q 001319 884 ---LKGHQKRI-TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIP------AGKTPTGDTRVQFNADQVRMLV 953 (1101)
Q Consensus 884 ---~~~h~~~V-~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l~~ 953 (1101)
+.....++ ..+.|+++++.++..+..+.|.+.|+.+............ .+..+.....++++||+.++.+
T Consensus 256 ~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyV 335 (426)
T 3c75_H 256 TEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYL 335 (426)
T ss_dssp CCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEE
T ss_pred eeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEE
Confidence 22222222 2457899998888778889999999976542211111110 0001123345799999998887
Q ss_pred Ee-----------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCC-EEEEEe-CCCcEEEEeCCCCceeEeeC
Q 001319 954 VH-----------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQ-LVFATF-CDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 954 ~~-----------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~-~l~s~~-~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
.. .+.|.++|..+++.+..+.. ......++|+|||+ +++++. .++.|.|+|+.+++.+.++.
T Consensus 336 a~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v----g~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI~ 410 (426)
T 3c75_H 336 LVDQRDEWKHKAASRFVVVLNAETGERINKIEL----GHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSVD 410 (426)
T ss_dssp EEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred EecccccccccCCCCEEEEEECCCCeEEEEEEC----CCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEec
Confidence 53 25799999999999999876 44688999999999 888887 59999999999999998873
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.7e-11 Score=126.98 Aligned_cols=279 Identities=10% Similarity=-0.042 Sum_probs=190.2
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
....+.+++++++|+ ++++...++.|.+||.. ++... + .+..+...+.+++++++|++.+
T Consensus 18 ~~~~p~~i~~d~~g~-l~v~~~~~~~v~~~~~~-~~~~~---~---------------~~~~~~~~~~~i~~~~~g~l~v 77 (300)
T 2qc5_A 18 PDSGPYGITSSEDGK-VWFTQHKANKISSLDQS-GRIKE---F---------------EVPTPDAKVMCLIVSSLGDIWF 77 (300)
T ss_dssp TTCCEEEEEECTTSC-EEEEETTTTEEEEECTT-SCEEE---E---------------ECSSTTCCEEEEEECTTSCEEE
T ss_pred CCCCcceeeECCCCC-EEEEcCCCCeEEEECCC-CceEE---E---------------ECCCCCCcceeEEECCCCCEEE
Confidence 456899999999998 55665567899999987 54321 0 1223346789999999999887
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE-eecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~h~~~v~~v~ 501 (1101)
+...++.|..||.. ++... ..+......+.++++.++|+ ++++...++.|..||..++.... +......+.+++
T Consensus 78 ~~~~~~~v~~~d~~-g~~~~--~~~~~~~~~~~~i~~~~~g~--l~v~~~~~~~i~~~~~~g~~~~~~~~~~~~~~~~i~ 152 (300)
T 2qc5_A 78 TENGANKIGKLSKK-GGFTE--YPLPQPDSGPYGITEGLNGD--IWFTQLNGDRIGKLTADGTIYEYDLPNKGSYPAFIT 152 (300)
T ss_dssp EETTTTEEEEECTT-SCEEE--EECSSTTCCEEEEEECSTTC--EEEEETTTTEEEEECTTSCEEEEECSSTTCCEEEEE
T ss_pred EecCCCeEEEECCC-CCeEE--ecCCCCCCCCccceECCCCC--EEEEccCCCeEEEECCCCCEEEccCCCCCCCceeEE
Confidence 77667889999988 54321 12223446789999999998 67777778899999955665422 333445688888
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
+.+ ++.+.++...++.|..|+. +++... ........+..+++.++|+..++.. ..+.|.+||. +++.....
T Consensus 153 ~d~--~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~----~~~~i~~~~~-~g~~~~~~ 224 (300)
T 2qc5_A 153 LGS--DNALWFTENQNNSIGRITN-TGKLEEYPLPTNAAAPVGITSGNDGALWFVEI----MGNKIGRITT-TGEISEYD 224 (300)
T ss_dssp ECT--TSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEET----TTTEEEEECT-TCCEEEEE
T ss_pred ECC--CCCEEEEecCCCeEEEECC-CCcEEEeeCCCCCCCcceEEECCCCCEEEEcc----CCCEEEEEcC-CCcEEEEE
Confidence 865 5666666666789999987 333322 2223345688999999998766653 2567999998 55544332
Q ss_pred cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 581 AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 581 ~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.......+..++++++|+.+++...++.|..|+. +++.. .+........+.+++++++|++.++.. . .|..++.
T Consensus 225 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 225 IPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DNTIQ-EYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TSCEE-EEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred CCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CCcEE-EEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 2212235778999999886666666789999998 45433 332222234678999999998665544 4 6666654
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.48 E-value=2.1e-12 Score=158.56 Aligned_cols=245 Identities=11% Similarity=0.043 Sum_probs=159.5
Q ss_pred cCCccEEEEEEccCCCEEEEEECC-----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc---
Q 001319 404 DVPISVSRVAWSPDGNYVGVAFTK-----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK--- 475 (1101)
Q Consensus 404 ~h~~~v~~~~~spdg~~las~~~d-----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~--- 475 (1101)
+|...+..++|||||++||.++.+ ..|++||+++|+.+.. ..+...+..++|+|| + .|+.++.|+
T Consensus 160 ~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~----~~~~~~~~~~~wspD-~--~l~~~~~~~~~~ 232 (741)
T 1yr2_A 160 DGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD----ELKWVKFSGLAWLGN-D--ALLYSRFAEPKE 232 (741)
T ss_dssp ---EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE----EEEEEESCCCEESTT-S--EEEEEECCCC--
T ss_pred CCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc----cCCCceeccEEEECC-C--EEEEEEecCccc
Confidence 455678999999999999987654 4699999999986441 112222467899999 8 455555444
Q ss_pred -----------eEEEEE-cCCc----eeEEeecCCcCeEEEecccCCCccEEEEeccCC-----eEEEEecCCC--Ceee
Q 001319 476 -----------LIKVWE-LSGR----KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTM--GSRV 532 (1101)
Q Consensus 476 -----------~v~iwd-~~~~----~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~--~~~~ 532 (1101)
.|++|+ .++. .+.....+...+..+.|++ ||++|+..+.++ .|.+||+.++ ....
T Consensus 233 ~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~Sp--DG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~ 310 (741)
T 1yr2_A 233 GQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSS--DGRWVVITSSEGTDPVNTVHVARVTNGKIGPVT 310 (741)
T ss_dssp ------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECTTCSCCEEEEEEEETTEECCCE
T ss_pred ccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECC--CCCEEEEEEEccCCCcceEEEEECCCCCCcccE
Confidence 388999 4444 2222223334578888876 778887776544 8999999876 3133
Q ss_pred eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC--eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEE
Q 001319 533 DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610 (1101)
Q Consensus 533 ~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~ 610 (1101)
.+..+...+.... +|+|+.|+..+........|.+||+.++ +....+..+ ...+..+++. ++..+++...|+..+
T Consensus 311 ~l~~~~~~~~~~~-~~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~-~~~l~~~~~~-~~~lv~~~~~dg~~~ 387 (741)
T 1yr2_A 311 ALIPDLKAQWDFV-DGVGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPES-KDNLESVGIA-GNRLFASYIHDAKSQ 387 (741)
T ss_dssp EEECSSSSCEEEE-EEETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCC-SSEEEEEEEE-BTEEEEEEEETTEEE
T ss_pred EecCCCCceEEEE-eccCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCC-CCeEEEEEEE-CCEEEEEEEECCEEE
Confidence 3333433444443 4899999887754334677999999885 344444443 3356667776 455666777888877
Q ss_pred EEECC-CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc----CCcEEEEEcccc
Q 001319 611 FWDMD-NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA----DNGFKILANAIG 661 (1101)
Q Consensus 611 iwd~~-~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~----d~~i~iwd~~~~ 661 (1101)
+|.+. +++....+..+. ...+..++++|++..++.... .++|++||+.++
T Consensus 388 l~~~~~~g~~~~~l~~~~-~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg 442 (741)
T 1yr2_A 388 VLAFDLDGKPAGAVSLPG-IGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATA 442 (741)
T ss_dssp EEEEETTSCEEEECBCSS-SCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTT
T ss_pred EEEEeCCCCceeeccCCC-CeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCC
Confidence 77554 455555555332 235778889999876664432 478999998776
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.47 E-value=1.9e-10 Score=127.18 Aligned_cols=291 Identities=9% Similarity=-0.019 Sum_probs=185.4
Q ss_pred EEecCCCceEEEEe-cCCc--eEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEec----------cCCeEEEE
Q 001319 458 AFAYPNKLLCVVTC-GDDK--LIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAW 523 (1101)
Q Consensus 458 ~~s~d~~~~~l~s~-~~d~--~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~----------~d~~i~~w 523 (1101)
...|++++++++.. +.+. +|.++| .+++.+.++.....+ .++++| ||++++.+. .++.|.+|
T Consensus 27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~p--~i~~sp--Dg~~lyv~n~~~~~~~rg~~~~~v~vi 102 (373)
T 2mad_H 27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFLP--NPVAAH--SGSEFALASTSFSRIAKGKRTDYVEVF 102 (373)
T ss_pred cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCCC--CeEECC--CCCEEEEEeccccccccCCCCCeEEEE
Confidence 44567774222222 2222 889999 888888877654444 888877 667888775 36789999
Q ss_pred ecCCCCeeeeccCC-------CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE-ecccCCcceEEEEEeC
Q 001319 524 LYDTMGSRVDYDAP-------GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 524 d~~~~~~~~~~~~~-------~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~~~v~~~~~~~ 595 (1101)
|..+.+....+... ......++++|||++|+++... .++.|.++| .+++.+.. +.... ++.+.|
T Consensus 103 D~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~--~~~~v~viD-~t~~~~~~~i~~~~-----~~~~~~ 174 (373)
T 2mad_H 103 DPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA--AGPAVGLVV-QGGSSDDQLLSSPT-----CYHIHP 174 (373)
T ss_pred ECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC--CCCeEEEEE-CCCCEEeEEcCCCc-----eEEEEe
Confidence 99887766655432 2235689999999999987631 146799999 99998877 65321 244556
Q ss_pred CC-CEEEEEeCCCcEEEEECCCCeeeEeecc----CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccC
Q 001319 596 TQ-NHFLAVGEDSQIKFWDMDNVNILTSTDA----EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVEN 670 (1101)
Q Consensus 596 ~~-~~l~~~~~dg~i~iwd~~~~~~~~~~~~----~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 670 (1101)
++ +.+++.+.||.+.++|. +++....... .+...-.....+.+++..++..+..+.+.+.|+.+....+ ...
T Consensus 175 ~~~~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v--~~~ 251 (373)
T 2mad_H 175 GAPSTFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATN--KAP 251 (373)
T ss_pred CCCceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceE--eee
Confidence 55 44556778999999999 8776643221 1111111234566666655555567788888775431100 000
Q ss_pred CCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc
Q 001319 671 PPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV 750 (1101)
Q Consensus 671 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~ 750 (1101)
. .+ .........+
T Consensus 252 --~-------------------------------------------------------~~-----~~~~~~~~~~----- 264 (373)
T 2mad_H 252 --I-------------------------------------------------------DA-----LSGGRKADTW----- 264 (373)
T ss_pred --e-------------------------------------------------------ee-----cCCcccccce-----
Confidence 0 00 0000000001
Q ss_pred cEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-------
Q 001319 751 GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT------- 823 (1101)
Q Consensus 751 ~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~------- 823 (1101)
.......+++++|++.+.++.
T Consensus 265 ----------------------------------------------------~p~g~~~~~~s~d~~~lyV~~~~~~~~~ 292 (373)
T 2mad_H 265 ----------------------------------------------------RPGGWQQVAYLKSSDGIYLLTSEQSAWK 292 (373)
T ss_pred ----------------------------------------------------ecCceEeEEECCCCCEEEEEeccCCccc
Confidence 111123356677776655532
Q ss_pred ----CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC-EEEEEe-CCCcEEEEEeecceEEEee
Q 001319 824 ----GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGT-EDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 824 ----dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~-~dg~v~iwd~~~~~~~~~~ 884 (1101)
++.|.++|+.+++.+.++.. ......++|+| |++ +++++. .++.|.+||+.+++.+..+
T Consensus 293 ~~~~~~~V~VID~~t~~vv~~i~~-g~~p~~i~~s~-Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~i 357 (373)
T 2mad_H 293 LHAAAKEVTSVTGLVGQTSSQISL-GHDVDAISVAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQST 357 (373)
T ss_pred ccCCCCeEEEEECCCCEEEEEEEC-CCCcCeEEECC-CCCeEEEEEcCCCCeEEEEECCCCCEEeee
Confidence 25799999999999998864 34689999999 777 777776 5899999999999988774
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.45 E-value=4.9e-12 Score=155.31 Aligned_cols=247 Identities=8% Similarity=-0.049 Sum_probs=156.9
Q ss_pred CCCcEEEEEEecCCceEEEEEecc----CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d----~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
|...+.+++|||||++++.+.+.+ ..|++||+.+++.+.. ..+...+..++||||
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~--------------------~~~~~~~~~~~wspD- 219 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLAD--------------------ELKWVKFSGLAWLGN- 219 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEE--------------------EEEEEESCCCEESTT-
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCc--------------------cCCCceeccEEEECC-
Confidence 344789999999999764443333 3699999999876431 011122357899999
Q ss_pred CEEEEEECCCe--------------EEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecC-----CceEE
Q 001319 419 NYVGVAFTKHL--------------IQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----DKLIK 478 (1101)
Q Consensus 419 ~~las~~~d~~--------------i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~-----d~~v~ 478 (1101)
+.|+.++.++. |++|++.++.... .......+...+..+.|+|||+. |+..+. ...|.
T Consensus 220 ~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~--l~~~~~~~~~~~~~l~ 297 (741)
T 1yr2_A 220 DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRW--VVITSSEGTDPVNTVH 297 (741)
T ss_dssp SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCE--EEEEEECTTCSCCEEE
T ss_pred CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCE--EEEEEEccCCCcceEE
Confidence 99999887654 8999998765321 11122233446899999999995 444433 34899
Q ss_pred EEE-cCC--ceeEEeecCCcCeEEEecccCCCccEEEEecc----CCeEEEEecCCCC--eeeeccCCCCceEEEEEccC
Q 001319 479 VWE-LSG--RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG--SRVDYDAPGHWCTTMLYSAD 549 (1101)
Q Consensus 479 iwd-~~~--~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~--~~~~~~~~~~~v~~~~~s~d 549 (1101)
+|| .++ ++...+..+...+....+ + +|+.|+..+. ++.|.+||+.+.. ....+..+...+..++++ +
T Consensus 298 ~~d~~~~~~~~~~~l~~~~~~~~~~~~-~--dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~ 373 (741)
T 1yr2_A 298 VARVTNGKIGPVTALIPDLKAQWDFVD-G--VGDQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-G 373 (741)
T ss_dssp EEEEETTEECCCEEEECSSSSCEEEEE-E--ETTEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-B
T ss_pred EEECCCCCCcccEEecCCCCceEEEEe-c--cCCEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-C
Confidence 999 555 315666666655555433 4 5566666654 3459999988752 233333444456677776 4
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCee
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1101)
+..+++... ++...|++++. ++...+.+..+....+..++++|+++.++... ..++|++||+.+++.
T Consensus 374 ~~lv~~~~~--dg~~~l~~~~~-~g~~~~~l~~~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~~ 444 (741)
T 1yr2_A 374 NRLFASYIH--DAKSQVLAFDL-DGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAKT 444 (741)
T ss_dssp TEEEEEEEE--TTEEEEEEEET-TSCEEEECBCSSSCEEEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTEE
T ss_pred CEEEEEEEE--CCEEEEEEEeC-CCCceeeccCCCCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCcE
Confidence 455555543 23334555565 35556666554344677888999988666432 457899999988873
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.43 E-value=5.5e-11 Score=129.54 Aligned_cols=248 Identities=11% Similarity=0.060 Sum_probs=164.6
Q ss_pred CCCcEEEEEEecCCceEEEE-------EeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 343 QGSTVISMDFHPSHQTLLLV-------GSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llas-------g~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
.-....+++|+++|+ ++++ +..++.|.+||..+++.... . .....++...+.+++++
T Consensus 16 ~~~~~~~~~~~~~g~-l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~---~------------~~~~~~~~~~~~~i~~~ 79 (314)
T 1pjx_A 16 DIPGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVI---C------------KPEVNGYGGIPAGCQCD 79 (314)
T ss_dssp CCTTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEE---E------------CCEETTEECCEEEEEEC
T ss_pred cCCCccCceECCCCC-EEEEEeccccCCCCCCEEEEEeCCCCcEEEE---E------------ecccCCCCCCCceEEEe
Confidence 345678999999997 6666 56788999999887765320 0 00012345679999999
Q ss_pred cC-CCEEEEEECCCeEEEEeecCCccccc-ceeee-cccCcEEEEEEecCCCceEEEEecCC---------------ceE
Q 001319 416 PD-GNYVGVAFTKHLIQLYSYAGSNDLRQ-HSQID-AHVGAVNDLAFAYPNKLLCVVTCGDD---------------KLI 477 (1101)
Q Consensus 416 pd-g~~las~~~d~~i~vwd~~~~~~~~~-~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~d---------------~~v 477 (1101)
++ |+++++. ..+.|.+||.+ ++.... ..... .....+.+++++++|+ +.++...+ +.|
T Consensus 80 ~~~g~l~v~~-~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~--l~v~~~~~~~~~~~~~~~~~~~~~~l 155 (314)
T 1pjx_A 80 RDANQLFVAD-MRLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSI 155 (314)
T ss_dssp SSSSEEEEEE-TTTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEE
T ss_pred cCCCcEEEEE-CCCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCC--EEEEecCcccccccccccccCCCCeE
Confidence 99 6655544 44479999988 653321 10001 1224588999999998 56655544 567
Q ss_pred EEEEcCCceeEEeecCCcCeEEEecc--cCCCccEE-EEeccCCeEEEEecC-CCC-----eeeeccCCC-CceEEEEEc
Q 001319 478 KVWELSGRKLFNFEGHEAPVYSICPH--HKENIQFI-FSTAIDGKIKAWLYD-TMG-----SRVDYDAPG-HWCTTMLYS 547 (1101)
Q Consensus 478 ~iwd~~~~~~~~~~~h~~~v~~v~~~--~~~~~~~l-~s~~~d~~i~~wd~~-~~~-----~~~~~~~~~-~~v~~~~~s 547 (1101)
..||..++... +..+......++++ .+++++.+ ++...++.|.+|+++ .+. ....+..+. ..+..++++
T Consensus 156 ~~~~~~g~~~~-~~~~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d 234 (314)
T 1pjx_A 156 YCFTTDGQMIQ-VDTAFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD 234 (314)
T ss_dssp EEECTTSCEEE-EEEEESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB
T ss_pred EEECCCCCEEE-eccCCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC
Confidence 77774465433 33333456778886 11366555 444568999999976 332 112233332 567889999
Q ss_pred cCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEE-eCCCcEEEEECCC
Q 001319 548 ADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDN 616 (1101)
Q Consensus 548 ~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~ 616 (1101)
++|+..++... ++.|.+||..+++....+..+.. .+..++++++++.|+++ ..++.|..|++..
T Consensus 235 ~~G~l~v~~~~----~~~i~~~d~~~g~~~~~~~~~~~-~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~ 299 (314)
T 1pjx_A 235 EDNNLLVANWG----SSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp TTCCEEEEEET----TTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred CCCCEEEEEcC----CCEEEEEcCCCCcEeEEEeCCCC-CceeEEECCCCCEEEEEeCCCCeEEEEeCCC
Confidence 99988877653 67899999988877777765543 68889999999966655 4668899999864
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.42 E-value=1e-10 Score=127.38 Aligned_cols=239 Identities=13% Similarity=0.136 Sum_probs=164.1
Q ss_pred CCEeEEEecCCCCeEEE-------Ec-CCeEEEEECCCceEEEEee----CCCCCeeEEEEecCC-CCEEEEEeCCCcEE
Q 001319 805 EAVPCIALSKNDSYVMS-------AT-GGKISLFNMMTFKVMTTFM----SPPPASTFLAFHPQD-NNIIAIGTEDSTIH 871 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~-------~~-dg~i~vwd~~~~~~~~~~~----~~~~~i~~l~~s~~~-~~~la~g~~dg~v~ 871 (1101)
....+++|+++|.++++ +. ++.|.+||..+++...... ++...+..+++++ + ++++++.. .+.|.
T Consensus 18 ~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~-~~g~l~v~~~-~~~l~ 95 (314)
T 1pjx_A 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADM-RLGLL 95 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEET-TTEEE
T ss_pred CCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEec-CCCcEEEEEC-CCCEE
Confidence 34678999999988887 33 7899999988887653322 1446789999999 6 66555544 45799
Q ss_pred EEEeecceEEEe-ecc----CCCCeeEEEEcCCCCEEEEEeCC---------------CcEEEEECCCCccccceEEeec
Q 001319 872 IYNVRVDEVKSK-LKG----HQKRITGLAFSTSLNILVSSGAD---------------AQLCVWSIDTWEKRKSVTIHIP 931 (1101)
Q Consensus 872 iwd~~~~~~~~~-~~~----h~~~V~~l~~s~d~~~l~s~s~D---------------g~v~lwd~~~~~~~~~~~~~~~ 931 (1101)
+||.. ++.... ... +...+.+++++++|+++++...+ +.|..|+.. ++...... ..
T Consensus 96 ~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~-~~- 171 (314)
T 1pjx_A 96 VVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT-AF- 171 (314)
T ss_dssp EEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE-EE-
T ss_pred EEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc-CC-
Confidence 99988 765433 221 12458899999999988877655 456666655 33221111 10
Q ss_pred CCCCCCCcceEEEc----CCCCEEEEEe--CCeEEEEEcC-Cceee--eEeccCCCCC-CCEEEEEEccCCCEEEEEeCC
Q 001319 932 AGKTPTGDTRVQFN----ADQVRMLVVH--ETQLAIYDAS-KMERI--RQWTPQDALS-APISCAVYSCNSQLVFATFCD 1001 (1101)
Q Consensus 932 ~~~~~~~v~~~~~s----~d~~~l~~~~--d~~i~v~d~~-~~~~~--~~~~~~~~h~-~~v~~v~~s~dg~~l~s~~~d 1001 (1101)
.....++++ |+++.+.++. ++.|.+|+.. +++.. ..+.....+. ..+..++++++|+++++...+
T Consensus 172 -----~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~ 246 (314)
T 1pjx_A 172 -----QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGS 246 (314)
T ss_dssp -----SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETT
T ss_pred -----CCcceEEEecccCCCCCEEEEEECCCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCC
Confidence 345788999 9997766653 6899999976 44321 1111111113 568899999999988888788
Q ss_pred CcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC-EEEEEECCCeEEEEeCCCC
Q 001319 1002 GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1002 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~-~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
+.|.+||..+++....+.. +. ..+.+++|+| ++. ++++...++.|..|++...
T Consensus 247 ~~i~~~d~~~g~~~~~~~~----------~~--~~~~~i~~~~-dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 247 SHIEVFGPDGGQPKMRIRC----------PF--EKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp TEEEEECTTCBSCSEEEEC----------SS--SCEEEEEECT-TSSEEEEEETTTTEEEEEECSSC
T ss_pred CEEEEEcCCCCcEeEEEeC----------CC--CCceeEEECC-CCCEEEEEeCCCCeEEEEeCCCC
Confidence 9999999987776655542 11 3567899988 577 6666667789999998753
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.2e-09 Score=118.05 Aligned_cols=278 Identities=11% Similarity=0.059 Sum_probs=183.6
Q ss_pred CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 537 PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 537 ~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
....+.++++.++|+..++.. .++.|.+||.. ++............+..+++.++++.+++...++.|..||..
T Consensus 18 ~~~~p~~i~~d~~g~l~v~~~----~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~- 91 (300)
T 2qc5_A 18 PDSGPYGITSSEDGKVWFTQH----KANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK- 91 (300)
T ss_dssp TTCCEEEEEECTTSCEEEEET----TTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-
T ss_pred CCCCcceeeECCCCCEEEEcC----CCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-
Confidence 345688999999999777654 26789999988 655442222222367889999999877777678899999987
Q ss_pred CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccC
Q 001319 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1101)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 696 (1101)
++.. .+........+..+++.++|+++++...++.|..++.. +.. . .+
T Consensus 92 g~~~-~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~-~-~~---------------------------- 139 (300)
T 2qc5_A 92 GGFT-EYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTI-Y-EY---------------------------- 139 (300)
T ss_dssp SCEE-EEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCE-E-EE----------------------------
T ss_pred CCeE-EecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCE-E-Ec----------------------------
Confidence 5543 23222222367899999999887776667888888765 311 0 00
Q ss_pred CCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCC
Q 001319 697 TPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 776 (1101)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 776 (1101)
.++ .....+..+++.++|+..++...++.+..++..
T Consensus 140 --------------------------------~~~---~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~--------- 175 (300)
T 2qc5_A 140 --------------------------------DLP---NKGSYPAFITLGSDNALWFTENQNNSIGRITNT--------- 175 (300)
T ss_dssp --------------------------------ECS---STTCCEEEEEECTTSSEEEEETTTTEEEEECTT---------
T ss_pred --------------------------------cCC---CCCCCceeEEECCCCCEEEEecCCCeEEEECCC---------
Confidence 000 023356778888888855555556777777531
Q ss_pred eeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEE-eeCCCCCeeEEEEe
Q 001319 777 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTT-FMSPPPASTFLAFH 854 (1101)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s 854 (1101)
+........ .....+.+++++++|.+.++.. .+.|.+||. +++.... +..+...+.+++++
T Consensus 176 --------------g~~~~~~~~--~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d 238 (300)
T 2qc5_A 176 --------------GKLEEYPLP--TNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAG 238 (300)
T ss_dssp --------------CCEEEEECS--STTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEEC
T ss_pred --------------CcEEEeeCC--CCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEEC
Confidence 111111111 1345678999999998777766 678999998 5554433 33345678999999
Q ss_pred cCCCCEEEEEeCCCcEEEEEeecceEEE-eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001319 855 PQDNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 855 ~~~~~~la~g~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
+ ++++.++...++.|..|+. +++... .+......+.++++.++|+.+++.. . .|..+|.
T Consensus 239 ~-~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~-~-~i~~~~p 298 (300)
T 2qc5_A 239 K-NSEIWFTEWGANQIGRITN-DNTIQEYQLQTENAEPHGITFGKDGSVWFALK-C-KIGKLNL 298 (300)
T ss_dssp S-TTCEEEEETTTTEEEEECT-TSCEEEEECCSTTCCCCCEEECTTSCEEEECS-S-EEEEEEE
T ss_pred C-CCCEEEeccCCCeEEEECC-CCcEEEEECCccCCccceeEeCCCCCEEEEcc-C-ceEEeCC
Confidence 9 7887766666789999998 454332 2333456789999999998766555 4 6666664
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.38 E-value=3.1e-11 Score=133.49 Aligned_cols=272 Identities=8% Similarity=0.059 Sum_probs=182.0
Q ss_pred cCCceEEEEEecc----CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE----
Q 001319 354 PSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF---- 425 (1101)
Q Consensus 354 pdg~~llasg~~d----~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~---- 425 (1101)
|++++++++...+ +.|.+.|..+++.+.. +.--..+ .+++||||++|+++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~-------------------I~vG~~P--gia~SpDgk~lyVan~~~~ 140 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGM-------------------TDGGFLP--HPVAAEDGSFFAQASTVFE 140 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECSSC--EEEECTTSSCEEEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEE-------------------EECCCCC--ceEECCCCCEEEEEecccc
Confidence 4566666665544 7999999999887753 1111234 899999999998886
Q ss_pred ------CCCeEEEEeecCCcccccceeee--c---ccCcEEEEEEecCCCceEEEEec--CCceEEEEE-cCCceeEEee
Q 001319 426 ------TKHLIQLYSYAGSNDLRQHSQID--A---HVGAVNDLAFAYPNKLLCVVTCG--DDKLIKVWE-LSGRKLFNFE 491 (1101)
Q Consensus 426 ------~d~~i~vwd~~~~~~~~~~~~l~--~---h~~~V~~l~~s~d~~~~~l~s~~--~d~~v~iwd-~~~~~~~~~~ 491 (1101)
.++.|.++|..+++.+..+. +. . ....-..++|+|||++ ++.+. .++.|.+.| .+++.+.++.
T Consensus 141 ~~~~G~~~~~VsviD~~t~~vv~~I~-v~g~~r~~~g~~P~~~~~spDGk~--lyV~n~~~~~~VsVID~~t~kvv~~I~ 217 (426)
T 3c75_H 141 RIARGKRTDYVEVFDPVTFLPIADIE-LPDAPRFLVGTYQWMNALTPDNKN--LLFYQFSPAPAVGVVDLEGKTFDRMLD 217 (426)
T ss_dssp ETTEEEEEEEEEEECTTTCCEEEEEE-ETTCCCCCBSCCGGGSEECTTSSE--EEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred ccccCCCCCEEEEEECCCCcEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEecCCCCeEEEEECCCCeEEEEEE
Confidence 36789999999988766432 21 0 1123457899999995 44443 368999999 8888887776
Q ss_pred cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee----eccCCCCc-eEEEEEccCCCEEEEeecCCCCCceE
Q 001319 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV----DYDAPGHW-CTTMLYSADGSRLFSCGTSKDGDSFL 566 (1101)
Q Consensus 492 ~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~----~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~~~~i 566 (1101)
-... ....|.+. ..+++.+.||.+.+.+..+.+... .+.....+ ...+.+++++..++.... .+.+
T Consensus 218 v~g~----~~~~p~g~-~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~----~g~V 288 (426)
T 3c75_H 218 VPDC----YHIFPASP-TVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTY----TGKI 288 (426)
T ss_dssp CCSE----EEEEEEET-TEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBT----TSEE
T ss_pred cCCc----eeeccCCC-cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeC----CCcE
Confidence 3221 12223322 455666678887777774443331 11212222 124567899988777654 5689
Q ss_pred EEEeCCCCeeE--EEeccc---------CCcceEEEEEeCCCCEEEEEeC----------CCcEEEEECCCCeeeEeecc
Q 001319 567 VEWNESEGTIK--RTYAGF---------RKKSNGVVQFDTTQNHFLAVGE----------DSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 567 ~iwd~~~~~~~--~~~~~~---------~~~~v~~~~~~~~~~~l~~~~~----------dg~i~iwd~~~~~~~~~~~~ 625 (1101)
.+.|...+... ..+... .......++++|+++++++... ++.|.++|..+.+.+..+..
T Consensus 289 ~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~v 368 (426)
T 3c75_H 289 FQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIEL 368 (426)
T ss_dssp EEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE
T ss_pred EEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCCCEEEEEECCCCeEEEEEEC
Confidence 99998655422 111100 0001223789999998887642 35799999999999998875
Q ss_pred CCCCCCCCeeEEecCCC-EEEEEE-cCCcEEEEEcccc
Q 001319 626 EGGLPNLPRLRFSKEGN-LLAVTT-ADNGFKILANAIG 661 (1101)
Q Consensus 626 ~~~~~~v~~v~~s~~g~-~l~~~~-~d~~i~iwd~~~~ 661 (1101)
.. ....++|+|||+ +++++. .++.|.++|+.+.
T Consensus 369 g~---~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~ 403 (426)
T 3c75_H 369 GH---EIDSINVSQDAEPLLYALSAGTQTLHIYDAATG 403 (426)
T ss_dssp EE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CC---CcCeEEEccCCCEEEEEEcCCCCeEEEEECCCC
Confidence 43 358999999999 888888 5899999999988
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.36 E-value=4.3e-10 Score=126.30 Aligned_cols=253 Identities=9% Similarity=0.011 Sum_probs=168.6
Q ss_pred CCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCC--cEEEEEeecceEE
Q 001319 805 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEVK 881 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg--~v~iwd~~~~~~~ 881 (1101)
.....++++++|+++++.. ++.|++||..++........ ..... ++|++ +++.|+++..++ .|++|+..++...
T Consensus 131 ~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~-~~~~~-ia~~~-~g~~l~~~d~~~~~~I~~~d~~~~~~~ 207 (409)
T 3hrp_A 131 KYMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPG-FKGGK-PAVTK-DKQRVYSIGWEGTHTVYVYMKASGWAP 207 (409)
T ss_dssp CCEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEET-CCBCB-CEECT-TSSEEEEEBSSTTCEEEEEEGGGTTCE
T ss_pred CCceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeecc-CCCCc-eeEec-CCCcEEEEecCCCceEEEEEcCCCcee
Confidence 4578899999999777766 68999999998877766554 33334 99999 888888888766 7888887765443
Q ss_pred Eee----ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCC-cceEEEcCCCCEEEEEe-
Q 001319 882 SKL----KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG-DTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 882 ~~~----~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~- 955 (1101)
..+ ..+...+.+++++|++..|+.+..++.|+.||..++........ ...+..... ...++|+|++..|.+++
T Consensus 208 ~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~-~~~g~~~~~P~~~ia~~p~~g~lyv~d~ 286 (409)
T 3hrp_A 208 TRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQL-ELSGSLGTNPGPYLIYYFVDSNFYMSDQ 286 (409)
T ss_dssp EEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEEC-CCCSCCCCSSCCEEEEETTTTEEEEEET
T ss_pred EEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecc-cccCCCCCCccccEEEeCCCCEEEEEeC
Confidence 333 22456788999999655666677788999999987653211000 011111111 13999999655555543
Q ss_pred -CCeEEEEEcCCceeeeEeccCC---C---------CCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeCCC
Q 001319 956 -ETQLAIYDASKMERIRQWTPQD---A---------LSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 956 -d~~i~v~d~~~~~~~~~~~~~~---~---------h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~ 1021 (1101)
++.|+.|+.+.. +..+.... + .-.....++++++|+++++-. .++.|+.|++.++.........
T Consensus 287 ~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~~~~I~~~~~~~G~v~~~~g~~ 364 (409)
T 3hrp_A 287 NLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFKGYCLRKLDILDGYVSTVAGQV 364 (409)
T ss_dssp TTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTTTCEEEEEETTTTEEEEEEECT
T ss_pred CCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCCCCEEEEEECCCCEEEEEeCCC
Confidence 688999987643 22222211 0 023578999999999888877 8899999998888754433210
Q ss_pred Cc--CCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1022 TY--LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1022 ~~--~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
.. .....-....-..+..+++++ ++.++++-..+++|+.+++
T Consensus 365 ~~~g~~~g~~~~~~~~~P~giavd~-~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 365 DVASQIDGTPLEATFNYPYDICYDG-EGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp TCBSCCCBSTTTCCBSSEEEEEECS-SSEEEEEESTTCEEEEEEE
T ss_pred CCCCcCCCChhceEeCCceEEEEcC-CCCEEEEECCCCeEEEEEe
Confidence 00 000000011234578999999 5888888888999988775
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.33 E-value=1.4e-10 Score=126.43 Aligned_cols=175 Identities=10% Similarity=0.108 Sum_probs=136.5
Q ss_pred CCCEeEEEecCCCCeEEEEcCCeEEEEECCCce-----------EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEE
Q 001319 804 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFK-----------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~-----------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~i 872 (1101)
...+..+++++...++++|+...+.+|++++.. ..... .+.. |+.++| ++.+|+++ .++.|++
T Consensus 37 ~~~~nlLais~~~gll~a~~~~~l~v~~~~~l~~~~~~~~~~~~~~~~~-~lp~-V~~l~f---d~~~L~v~-~~~~l~v 110 (388)
T 1xip_A 37 FASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEK-EIPD-VIFVCF---HGDQVLVS-TRNALYS 110 (388)
T ss_dssp SSCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEE-ECTT-EEEEEE---ETTEEEEE-ESSEEEE
T ss_pred cccccEEEEcCCCCEEEEeCCCEEEEEEhhHhhhhhccccccccceEEe-eCCC-eeEEEE---CCCEEEEE-cCCcEEE
Confidence 346889999999999999997788889876443 11222 2455 999999 56888888 8899999
Q ss_pred EEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 873 YNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 873 wd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
||+.+.........|..++.++.+.+.. +++++.||.|.+||+.++.... .. ..+++++|||+| ..+
T Consensus 111 ~dv~sl~~~~~~~~~~~~v~~i~~~~p~--~av~~~dG~L~v~dl~~~~~~~---~~-------~~Vs~v~WSpkG-~~v 177 (388)
T 1xip_A 111 LDLEELSEFRTVTSFEKPVFQLKNVNNT--LVILNSVNDLSALDLRTKSTKQ---LA-------QNVTSFDVTNSQ-LAV 177 (388)
T ss_dssp EESSSTTCEEEEEECSSCEEEEEECSSE--EEEEETTSEEEEEETTTCCEEE---EE-------ESEEEEEECSSE-EEE
T ss_pred EEchhhhccCccceeecceeeEEecCCC--EEEEECCCCEEEEEccCCcccc---cc-------CCceEEEEcCCc-eEE
Confidence 9998766555666788889988887653 8889999999999999876532 11 579999999999 444
Q ss_pred EEeCCeEEEEEcCCcee--eeEecc------CCCCCCCEEEEEEccCCCEEEE
Q 001319 953 VVHETQLAIYDASKMER--IRQWTP------QDALSAPISCAVYSCNSQLVFA 997 (1101)
Q Consensus 953 ~~~d~~i~v~d~~~~~~--~~~~~~------~~~h~~~v~~v~~s~dg~~l~s 997 (1101)
...|+.+++|+.+.++. ...+.. +.+|...|.+|.|.++++++++
T Consensus 178 g~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 178 LLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp EETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred EEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 46699999999988775 555522 1135789999999999999887
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.33 E-value=8.3e-10 Score=118.73 Aligned_cols=229 Identities=9% Similarity=0.015 Sum_probs=152.3
Q ss_pred CCEeEEEecCCCCeEEEE-c-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 805 EAVPCIALSKNDSYVMSA-T-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~-~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
.-..+..|++++..|... . ++.|..||..+++.. .+. ....+.++++++ +++++++ . ++.|.+||..+++...
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~-~~~-~~~~~~~i~~~~-dG~l~v~-~-~~~l~~~d~~~g~~~~ 87 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQ-RVT-MDAPVSSVALRQ-SGGYVAT-I-GTKFCALNWKEQSAVV 87 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEE-EEE-CSSCEEEEEEBT-TSSEEEE-E-TTEEEEEETTTTEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEE-EEe-CCCceEEEEECC-CCCEEEE-E-CCeEEEEECCCCcEEE
Confidence 345688999966554444 4 789999999887653 332 356799999999 7886554 4 5689999998876543
Q ss_pred eecc----CCCCeeEEEEcCCCCEEEEEeCC---------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCC
Q 001319 883 KLKG----HQKRITGLAFSTSLNILVSSGAD---------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 883 ~~~~----h~~~V~~l~~s~d~~~l~s~s~D---------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
.... ....+.+++++|+|+++++...+ ..-.+|.+............. .....++|+||++
T Consensus 88 ~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~------~~pngi~~spdg~ 161 (297)
T 3g4e_A 88 LATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQV------DISNGLDWSLDHK 161 (297)
T ss_dssp EEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEE------SBEEEEEECTTSC
T ss_pred EEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeecc------ccccceEEcCCCC
Confidence 3221 12458899999999977755322 334666665432211111111 3457899999999
Q ss_pred EEEEEe--CCeEEEEEc--CCceee--eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCc
Q 001319 950 RMLVVH--ETQLAIYDA--SKMERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1023 (1101)
Q Consensus 950 ~l~~~~--d~~i~v~d~--~~~~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 1023 (1101)
.|.+++ ++.|.+|++ .++... ..+.....+......++++++|++.++...++.|.+||.++++.+..+..
T Consensus 162 ~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~--- 238 (297)
T 3g4e_A 162 IFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKL--- 238 (297)
T ss_dssp EEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEEC---
T ss_pred EEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEEC---
Confidence 887754 688999987 455431 11211111145678999999999888888888999999999998887763
Q ss_pred CCCcccCCCCccceEEEEEe-cCCCCEEEEEECC
Q 001319 1024 LSPSVLNGSQTVYPLVVAAH-PLEPNQFAIGLTD 1056 (1101)
Q Consensus 1024 ~~~~~~~h~~~~~~~~l~~~-p~d~~~l~s~~~D 1056 (1101)
+ ...+++++|. |+...++++...+
T Consensus 239 -------p--~~~~t~~~f~g~d~~~L~vt~~~~ 263 (297)
T 3g4e_A 239 -------P--VDKTTSCCFGGKNYSEMYVTCARD 263 (297)
T ss_dssp -------S--SSBEEEEEEESGGGCEEEEEEBCT
T ss_pred -------C--CCCceEEEEeCCCCCEEEEEcCCc
Confidence 1 1356799998 7434455555443
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.6e-10 Score=126.90 Aligned_cols=238 Identities=11% Similarity=0.012 Sum_probs=159.6
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
.....|+|+|+|+ |+++...++.|++||..++..... ... ..... ++|+|+++.|+++
T Consensus 131 ~~P~~la~d~~g~-lyv~d~~~~~I~~id~~~g~~~~~-------------------~~~-~~~~~-ia~~~~g~~l~~~ 188 (409)
T 3hrp_A 131 KYMWGIAAVGNNT-VLAYQRDDPRVRLISVDDNKVTTV-------------------HPG-FKGGK-PAVTKDKQRVYSI 188 (409)
T ss_dssp CCEEEEEECSTTE-EEEEETTTTEEEEEETTTTEEEEE-------------------EET-CCBCB-CEECTTSSEEEEE
T ss_pred CCceEEEEeCCCC-EEEEecCCCcEEEEECCCCEEEEe-------------------ecc-CCCCc-eeEecCCCcEEEE
Confidence 4789999999998 777777778999999987765431 111 22233 9999999999998
Q ss_pred ECCC--eEEEEeecCCcccccceeeec-ccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe-----ecCCc
Q 001319 425 FTKH--LIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF-----EGHEA 495 (1101)
Q Consensus 425 ~~d~--~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~-----~~h~~ 495 (1101)
..++ .|.+|+..++........+.. ....+.+++++|++.. |+.+..++.|+.|| .++. ...+ .++..
T Consensus 189 d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~--lyv~d~~~~I~~~d~~~~~-~~~~~~~~~~g~~~ 265 (409)
T 3hrp_A 189 GWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEW--LYFVDSNKNFGRFNVKTQE-VTLIKQLELSGSLG 265 (409)
T ss_dssp BSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSE--EEEECTTCEEEEEETTTCC-EEEEEECCCCSCCC
T ss_pred ecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCe--EEEEECCCcEEEEECCCCC-EEEEecccccCCCC
Confidence 8766 789999877654332211112 4567889999995553 33366688999999 4444 3333 22222
Q ss_pred Ce--EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC---------------CCceEEEEEccCCCEEEEeec
Q 001319 496 PV--YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP---------------GHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 496 ~v--~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~---------------~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
.- ..++|++. ++.++++-..++.|+.|+.+.. ...+.+. -.....++++++|+++++-.
T Consensus 266 ~~P~~~ia~~p~-~g~lyv~d~~~~~I~~~~~~g~--~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~- 341 (409)
T 3hrp_A 266 TNPGPYLIYYFV-DSNFYMSDQNLSSVYKITPDGE--CEWFCGSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDG- 341 (409)
T ss_dssp CSSCCEEEEETT-TTEEEEEETTTTEEEEECTTCC--EEEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEET-
T ss_pred CCccccEEEeCC-CCEEEEEeCCCCEEEEEecCCC--EEEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeC-
Confidence 22 38898774 3566777777899999987643 2222111 13478999999999666643
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccC--------------CcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFR--------------KKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~--------------~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
.+++.|+.|+..++... ++.++. -.....+++++++..+++-..++.|+.+++
T Consensus 342 --~~~~~I~~~~~~~G~v~-~~~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~ 408 (409)
T 3hrp_A 342 --FKGYCLRKLDILDGYVS-TVAGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAV 408 (409)
T ss_dssp --TTTCEEEEEETTTTEEE-EEEECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEE
T ss_pred --CCCCEEEEEECCCCEEE-EEeCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEe
Confidence 02778999998887754 333320 124667999999776666677788887765
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=3.8e-10 Score=137.01 Aligned_cols=250 Identities=11% Similarity=0.038 Sum_probs=162.8
Q ss_pred CCCcEEEEEEecCCceEEEEE----eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg----~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
|...+..++|||||++++.+. +....|++||+.+|+.+.. .+ +......++|+ ||
T Consensus 127 ~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~------------------~~--~~~k~~~~~Ws-Dg 185 (693)
T 3iuj_A 127 GTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET------------------PL--KDVKFSGISWL-GN 185 (693)
T ss_dssp SCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE------------------EE--EEEESCCCEEE-TT
T ss_pred CcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc------------------cc--CCceeccEEEe-CC
Confidence 445789999999999764443 3335799999999886431 01 11113578999 99
Q ss_pred CEEEEEECCC-------------eEEEEeecCCcccc-cceeeec-ccCcEEEEEEecCCCceEEEEec---CCceEEEE
Q 001319 419 NYVGVAFTKH-------------LIQLYSYAGSNDLR-QHSQIDA-HVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVW 480 (1101)
Q Consensus 419 ~~las~~~d~-------------~i~vwd~~~~~~~~-~~~~l~~-h~~~V~~l~~s~d~~~~~l~s~~---~d~~v~iw 480 (1101)
+.|+.++.+. .|++|++.++..-. .+..... |...+..+.|+|||+++ +++.+ .+..|.+|
T Consensus 186 ~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l-~~~~~~~~~~~~i~~~ 264 (693)
T 3iuj_A 186 EGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFL-LISAANSTSGNRLYVK 264 (693)
T ss_dssp TEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEE-EEEEESSSSCCEEEEE
T ss_pred CEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEE-EEEEccCCCCcEEEEE
Confidence 9999998874 39999998765321 1112233 45568899999999963 33332 23589999
Q ss_pred E-cCCc-eeEEeecCCcCeEEEecccCCCccEEEEeccC---CeEEEEecCCCCe--eeeccCCCCceEEEEEccCCCEE
Q 001319 481 E-LSGR-KLFNFEGHEAPVYSICPHHKENIQFIFSTAID---GKIKAWLYDTMGS--RVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 481 d-~~~~-~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d---~~i~~wd~~~~~~--~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
| .++. ....+..+....... +.+. ++.+++.+..+ +.|..|++.+... ...+..+...+. .|++++++|
T Consensus 265 d~~~~~~~~~~l~~~~~~~~~~-~~~~-g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s~~g~~l 340 (693)
T 3iuj_A 265 DLSQENAPLLTVQGDLDADVSL-VDNK-GSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--TVHSGSGYL 340 (693)
T ss_dssp ETTSTTCCCEEEECSSSSCEEE-EEEE-TTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--EEEEETTEE
T ss_pred ECCCCCCceEEEeCCCCceEEE-Eecc-CCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--EEEEECCEE
Confidence 9 4443 556666666665554 3333 23444555443 6799999987654 123344444444 899999998
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC----CcEEEEECCCCeee
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED----SQIKFWDMDNVNIL 620 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d----g~i~iwd~~~~~~~ 620 (1101)
+.... .++...|++||+..+. .+.+.......+..+.++++++.++....+ +.++.||+.+++..
T Consensus 341 v~~~~-~~g~~~l~~~d~~g~~-~~~l~~p~~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~~~ 409 (693)
T 3iuj_A 341 FAEYM-VDATARVEQFDYEGKR-VREVALPGLGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGAIS 409 (693)
T ss_dssp EEEEE-ETTEEEEEEECTTSCE-EEEECCSSSSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCCEE
T ss_pred EEEEE-ECCeeEEEEEECCCCe-eEEeecCCCceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCeEE
Confidence 87764 2334579999988554 444443332346667778888877765544 88999999877643
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.29 E-value=9.1e-10 Score=118.39 Aligned_cols=228 Identities=11% Similarity=0.097 Sum_probs=155.6
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
..-..+..|+|+++.|+++...++.|..||..+++... + .....+.+++++|+|+++++
T Consensus 12 ~~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~-~~~~~~~~i~~~~dG~l~v~ 70 (297)
T 3g4e_A 12 CRCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTKQVQR--------------------V-TMDAPVSSVALRQSGGYVAT 70 (297)
T ss_dssp CSBEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEE--------------------E-ECSSCEEEEEEBTTSSEEEE
T ss_pred CccccCCeEECCCCEEEEEECCCCEEEEEECCCCcEEE--------------------E-eCCCceEEEEECCCCCEEEE
Confidence 34567899999877788888888999999998765421 1 13457999999999995554
Q ss_pred EECCCeEEEEeecCCcccccceeee-c-ccCcEEEEEEecCCCceEEEEe-cC----------CceEEEEEcCCceeEEe
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTC-GD----------DKLIKVWELSGRKLFNF 490 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~~~l~s~-~~----------d~~v~iwd~~~~~~~~~ 490 (1101)
. ++.|.+||.++++... +.... + ....+++++++|+|+ ++++. .. .+.|..++..++... +
T Consensus 71 -~-~~~l~~~d~~~g~~~~-~~~~~~~~~~~~~~di~~d~dG~--l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~-~ 144 (297)
T 3g4e_A 71 -I-GTKFCALNWKEQSAVV-LATVDNDKKNNRFNDGKVDPAGR--YFAGTMAEETAPAVLERHQGALYSLFPDHHVKK-Y 144 (297)
T ss_dssp -E-TTEEEEEETTTTEEEE-EEECCTTCSSEEEEEEEECTTSC--EEEEEEECCSBTTBCCTTCEEEEEECTTSCEEE-E
T ss_pred -E-CCeEEEEECCCCcEEE-EEecCCCCCCCCCCCEEECCCCC--EEEecCCcccccccccCCCcEEEEEECCCCEEE-E
Confidence 4 5679999998876422 11111 1 124588999999998 44443 21 234444444454433 3
Q ss_pred ecCCcCeEEEecccCCCccEE-EEeccCCeEEEEecC--CCCee-----eeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 491 EGHEAPVYSICPHHKENIQFI-FSTAIDGKIKAWLYD--TMGSR-----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~~~~-----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
..+....+.++|++ +++.| ++.+.++.|.+|+++ ++... ..+.........++++++|++.++...
T Consensus 145 ~~~~~~pngi~~sp--dg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~---- 218 (297)
T 3g4e_A 145 FDQVDISNGLDWSL--DHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN---- 218 (297)
T ss_dssp EEEESBEEEEEECT--TSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET----
T ss_pred eeccccccceEEcC--CCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC----
Confidence 33344568899977 55555 566678899999974 33221 122222346789999999987776653
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEe-CCCCEEEEEeC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 605 (1101)
.+.|..||..+++.+..+..+.. .+.+++|. |+++.|++++.
T Consensus 219 ~~~v~~~d~~tG~~~~~i~~p~~-~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 219 GGRVIRLDPVTGKRLQTVKLPVD-KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp TTEEEEECTTTCCEEEEEECSSS-BEEEEEEESGGGCEEEEEEB
T ss_pred CCEEEEEcCCCceEEEEEECCCC-CceEEEEeCCCCCEEEEEcC
Confidence 67899999999999988887644 68889998 88888777654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.28 E-value=6.7e-10 Score=120.05 Aligned_cols=229 Identities=11% Similarity=0.027 Sum_probs=154.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+.......+|+|+|++|++++..++.|..|+. +++... +..+...+..++++++|+++
T Consensus 42 ~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~~--------------------~~~~~~~~~gl~~d~dG~l~ 100 (305)
T 3dr2_A 42 DQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVDV--------------------LLDATAFTNGNAVDAQQRLV 100 (305)
T ss_dssp CCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEEE--------------------EEESCSCEEEEEECTTSCEE
T ss_pred cCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEEE--------------------EeCCCCccceeeECCCCCEE
Confidence 355678899999999988888888899999987 443211 33355678999999999977
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecc-cCcEEEEEEecCCCceEEEE----ecC-------------CceEEEEE-c
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAH-VGAVNDLAFAYPNKLLCVVT----CGD-------------DKLIKVWE-L 482 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h-~~~V~~l~~s~d~~~~~l~s----~~~-------------d~~v~iwd-~ 482 (1101)
++...++.|.+|+.+ ++.........+. ...++++++.++|+ +.+| |.. .+.|..|| .
T Consensus 101 v~~~~~~~v~~~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~--l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~ 177 (305)
T 3dr2_A 101 HCEHGRRAITRSDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGA--IWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPD 177 (305)
T ss_dssp EEETTTTEEEEECTT-SCEEEEECEETTEECSCCCCEEECTTSC--EEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSS
T ss_pred EEECCCCEEEEECCC-CCEEEEEeccCCCccCCCCCEEECCCCC--EEEeCcCCCccccccccccccccCCCeEEEEcCC
Confidence 666566789999986 4422111111111 23467899999998 6665 332 35677888 4
Q ss_pred CCceeEEeecCCcCeEEEecccCCCccEEEEeccC------CeEEEEecCCCCe---eeeccCCCCceEEEEEccCCCEE
Q 001319 483 SGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGS---RVDYDAPGHWCTTMLYSADGSRL 553 (1101)
Q Consensus 483 ~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~---~~~~~~~~~~v~~~~~s~d~~~l 553 (1101)
+++..... .......++|++ +++.|+.+... +.|.+|++..... .............++++++|++.
T Consensus 178 ~g~~~~~~--~~~~p~gl~~sp--dg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lw 253 (305)
T 3dr2_A 178 GSPLQRMA--DLDHPNGLAFSP--DEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLW 253 (305)
T ss_dssp SCCCEEEE--EESSEEEEEECT--TSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEE
T ss_pred CCcEEEEe--cCCCCcceEEcC--CCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEE
Confidence 56544332 344567889977 56767666554 7899999875431 11112223345678999999955
Q ss_pred EEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS 607 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg 607 (1101)
++. . + .|.+|+. .++.+..+.... .+..++|+++++.|+.++.++
T Consensus 254 v~~-~----~-gv~~~~~-~g~~~~~~~~~~--~~~~~~f~~d~~~L~it~~~~ 298 (305)
T 3dr2_A 254 SSS-G----T-GVCVFDS-DGQLLGHIPTPG--TASNCTFDQAQQRLFITGGPC 298 (305)
T ss_dssp ECC-S----S-EEEEECT-TSCEEEEEECSS--CCCEEEECTTSCEEEEEETTE
T ss_pred Eec-C----C-cEEEECC-CCCEEEEEECCC--ceeEEEEeCCCCEEEEEcCCe
Confidence 543 1 3 4999998 567777776544 477789999999998888764
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.27 E-value=1.9e-10 Score=126.67 Aligned_cols=270 Identities=12% Similarity=0.024 Sum_probs=171.2
Q ss_pred CcEEEEEEecCCceEEEEEe--ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 345 STVISMDFHPSHQTLLLVGS--SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~--~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
..+..|+++|+|+ ++++.. .++.++||.+.+++.. ++.-|. ....+|-..+..++|+|+|++++
T Consensus 17 ~~p~~va~~~~g~-~~v~~~~~~~~~~~l~~~~~g~~~---~~p~~~----------~~~~~~~~~p~gv~~d~~g~L~v 82 (343)
T 2qe8_A 17 LAPGNITLTPDGR-LFLSLHQFYQPEMQVAELTQDGLI---PFPPQS----------GNAIITFDTVLGIKSDGNGIVWM 82 (343)
T ss_dssp SCEEEEEECTTSC-EEEEECGGGCCSCSEEEEETTEEE---ESCCCC----------SSCCCCCSCEEEEEECSSSEEEE
T ss_pred CCcceEEECCCCC-EEEEeCCCCCCceEEEEECCCCee---cCCCcc----------cCcccceeEeeEEEEcCCCcEEE
Confidence 6899999999998 556643 2343677777644432 111111 01234667899999999998666
Q ss_pred EEEC-----CCeEEEEeecCCcccccceeee----cccCcEEEEEEecCCCceEEEEec---CCceEEEEE-cCCceeEE
Q 001319 423 VAFT-----KHLIQLYSYAGSNDLRQHSQID----AHVGAVNDLAFAYPNKLLCVVTCG---DDKLIKVWE-LSGRKLFN 489 (1101)
Q Consensus 423 s~~~-----d~~i~vwd~~~~~~~~~~~~l~----~h~~~V~~l~~s~d~~~~~l~s~~---~d~~v~iwd-~~~~~~~~ 489 (1101)
+-.. ++.|.+||+++++.++.+ .+. .+...+..+++++++.. ++++.. .++.|.+|| .+++..+.
T Consensus 83 ~D~g~~~~~~~~i~~~d~~tg~~~~~~-~~~~~~~~~~~~~~~v~vd~~~g~-~yvtd~~~~~~~~i~v~d~~~g~~~r~ 160 (343)
T 2qe8_A 83 LDNGNQSKSVPKLVAWDTLNNQLSRVI-YLPPPITLSNSFVNDLAVDLIHNF-VYISDPAPDDKAALIRVDLQTGLAARV 160 (343)
T ss_dssp EECHHHHTSCCEEEEEETTTTEEEEEE-ECCTTTSCTTCCCCEEEEETTTTE-EEEEECCSGGGCEEEEEETTTCCEEEE
T ss_pred EcCCCCcCCCCeEEEEECCCCeEEEEE-ECChhhcccccccceEEEecCCCE-EEEEcCccCCCCeEEEEECCCCCEEEE
Confidence 5543 578999999988755422 121 22345789999987654 455555 678999999 77877666
Q ss_pred eecCCcCeE-EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 490 FEGHEAPVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 490 ~~~h~~~v~-~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
+.+|..... ...+.. +|..+.+.+.++.++.|. ..+..++++|||+.|+.+.. ....++.
T Consensus 161 ~~~~~~~~~~~~~~~~--~g~~~~~~~~~g~~~~~~--------------~~~~gia~s~dg~~ly~~~~---~~~~l~~ 221 (343)
T 2qe8_A 161 LQGYPGIAPEDIDLVI--DGVPVQIGQPDGTVIRPH--------------LGVNGIVLDAENEWLYLSPM---HSTSMYR 221 (343)
T ss_dssp CTTCTTTSCCSCCCEE--TTEECBEECTTSCEECCC--------------CCEEEEEECTTSCEEEEEES---SCSEEEE
T ss_pred ecCCCcccccccceeE--CCEEEEeccCCCceecee--------------cccceeEeccCCCEEEEEeC---CCCeEEE
Confidence 665533211 122322 456677777788877663 13678999999998888754 1335555
Q ss_pred EeCC---CCe-----eEE--EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 569 WNES---EGT-----IKR--TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 569 wd~~---~~~-----~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
++.. .+. ... ...++.. ....++++++|+.+++...++.|.+||..+++........ ......+++|.
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~g~~g-~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~~~-~~~~p~~va~~ 299 (343)
T 2qe8_A 222 IKSADLSNLQLTDAELGSKIERYSEKP-ICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVTDE-KLSWTDSFNFG 299 (343)
T ss_dssp EEHHHHTCTTCCHHHHHTTCEEEEECC-SCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEECG-GGSCEEEEEEC
T ss_pred EEHHHhcCCCCChhhhhcceEecccCC-CCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEECC-ceecCCeeEEC
Confidence 5532 110 000 1112222 3445899999988888888999999998566644333221 12346789999
Q ss_pred cCCCEEEEEEcCC
Q 001319 639 KEGNLLAVTTADN 651 (1101)
Q Consensus 639 ~~g~~l~~~~~d~ 651 (1101)
++|.++++.+..+
T Consensus 300 ~~g~l~v~~~~~~ 312 (343)
T 2qe8_A 300 SDGYLYFDCNQLH 312 (343)
T ss_dssp TTSCEEEEECCGG
T ss_pred CCCcEEEEeCccc
Confidence 9888777665443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=1.2e-09 Score=130.99 Aligned_cols=192 Identities=13% Similarity=0.117 Sum_probs=136.1
Q ss_pred CCeEEEEECCCceEEEEeeCCCCC--------------------------------eeEEEEecCCCCEEEEEeCCC---
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPA--------------------------------STFLAFHPQDNNIIAIGTEDS--- 868 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------i~~l~~s~~~~~~la~g~~dg--- 868 (1101)
+|.|+.||..+|+.+..+...... ...+++++ ++.+|++++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~-~~~~vy~~~~~~~~w 267 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDA-ELNTMYVGTGNGSPW 267 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESS
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcC-CCCEEEEECCCCccc
Confidence 477888888888888776542211 13578888 677888887664
Q ss_pred ----------------cEEEEEeecceEEEeecc--CC-------CCeeEEEEcCCC---CEEEEEeCCCcEEEEECCCC
Q 001319 869 ----------------TIHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSL---NILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 869 ----------------~v~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~d~---~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
.|..+|..+|+.+..++. |. ....-+....+| +.++.++.+|.|+++|..+|
T Consensus 268 ~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG 347 (677)
T 1kb0_A 268 SHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNG 347 (677)
T ss_dssp CHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTC
T ss_pred cCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCC
Confidence 599999999998877653 21 122223344477 68999999999999999999
Q ss_pred ccccceEEeec--------CCC--------------------C-CCCcceEEEcCCCCEEEEEe----------------
Q 001319 921 EKRKSVTIHIP--------AGK--------------------T-PTGDTRVQFNADQVRMLVVH---------------- 955 (1101)
Q Consensus 921 ~~~~~~~~~~~--------~~~--------------------~-~~~v~~~~~s~d~~~l~~~~---------------- 955 (1101)
+.+........ .+. . ...-..++|+|++.++++..
T Consensus 348 ~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~g 427 (677)
T 1kb0_A 348 KFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFN 427 (677)
T ss_dssp CEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTT
T ss_pred CEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceeeecccccccc
Confidence 87644332100 000 0 00112678999988887732
Q ss_pred ----------------------------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 956 ----------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 956 ----------------------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
.+.|..||+.+++.+..+.. ..++....++.+|.++++++.||.+++|
T Consensus 428 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~----~~~~~~g~~~~~g~~v~~g~~dg~l~a~ 503 (677)
T 1kb0_A 428 QAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEH----VSPWNGGTLTTAGNVVFQGTADGRLVAY 503 (677)
T ss_dssp CCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEE----SSSCCCCEEEETTTEEEEECTTSEEEEE
T ss_pred cccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCC----CCCCcCcceEeCCCEEEEECCCCcEEEE
Confidence 16799999999998877764 3344455567788899999999999999
Q ss_pred eCCCCceeEeeCC
Q 001319 1008 DADTLRLRCYIAP 1020 (1101)
Q Consensus 1008 d~~~~~~~~~~~~ 1020 (1101)
|..+|+.+..+..
T Consensus 504 D~~tG~~lw~~~~ 516 (677)
T 1kb0_A 504 HAATGEKLWEAPT 516 (677)
T ss_dssp ETTTCCEEEEEEC
T ss_pred ECCCCceeeeeeC
Confidence 9999999998873
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.26 E-value=9.8e-11 Score=127.52 Aligned_cols=196 Identities=10% Similarity=0.036 Sum_probs=129.4
Q ss_pred eEEEecCCCCeEEEEc---CCeEEE--EECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec-----
Q 001319 808 PCIALSKNDSYVMSAT---GGKISL--FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV----- 877 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~---dg~i~v--wd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~----- 877 (1101)
..++++|||++++++. ++.+.+ +|+.+ +.++... +. ..+.|++...+++.+.||++.+.++.+
T Consensus 127 ~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~-~~---~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~ 199 (368)
T 1mda_H 127 HIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSA-SC---FHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199 (368)
T ss_dssp TSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECS-SC---CCCEEEETTEEECCCCTTSCEEEECCSSCCCC
T ss_pred ceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECC-Cc---eEEccCCCeEEEEEcCCCCEEEEECccccccC
Confidence 3588999999888775 356888 88877 4444321 11 223343455666777899999999887
Q ss_pred ceEEE----eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEee------cCCCCCCCcceEEEcCC
Q 001319 878 DEVKS----KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHI------PAGKTPTGDTRVQFNAD 947 (1101)
Q Consensus 878 ~~~~~----~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~------~~~~~~~~v~~~~~s~d 947 (1101)
++... .+.-...+. + ++++..++..+. +.|.+.|+.+........+.. ..+..+.....++++||
T Consensus 200 ~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~d 274 (368)
T 1mda_H 200 GIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKN 274 (368)
T ss_dssp EECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETT
T ss_pred CeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-CEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCC
Confidence 44331 111112333 3 666666666666 899999997643211111110 01111122334789999
Q ss_pred CCEEEEE-e-C--------CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCE-EEEEe-CCCcEEEEeCCCCcee
Q 001319 948 QVRMLVV-H-E--------TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQL-VFATF-CDGNIGVFDADTLRLR 1015 (1101)
Q Consensus 948 ~~~l~~~-~-d--------~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~-l~s~~-~dg~i~vwd~~~~~~~ 1015 (1101)
++.+.++ . . +.+.++|+.+++.+..+.. ......++|++||++ +++.. .++.|.|+|+.+++.+
T Consensus 275 g~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~v----g~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv 350 (368)
T 1mda_H 275 TDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN----GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQ 350 (368)
T ss_dssp TTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE----EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEE
T ss_pred CCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEEC----CCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEE
Confidence 9988874 3 2 3677999999999988876 346889999999985 45555 5999999999999999
Q ss_pred EeeC
Q 001319 1016 CYIA 1019 (1101)
Q Consensus 1016 ~~~~ 1019 (1101)
.++.
T Consensus 351 ~~I~ 354 (368)
T 1mda_H 351 SSVE 354 (368)
T ss_dssp EECC
T ss_pred EEEE
Confidence 8886
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=99.25 E-value=1.2e-10 Score=128.25 Aligned_cols=271 Identities=8% Similarity=0.029 Sum_probs=178.7
Q ss_pred ccEEEEEeecCcccEEEeec--CCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC
Q 001319 738 SKVVRLLYTNSAVGLLALGS--NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN 815 (1101)
Q Consensus 738 ~~i~~~~~s~~~~~l~~~~~--dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d 815 (1101)
..+..++++++|+.+++... ++.+++|.+.. ++..... .|.. ....+...+..++++++
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~------g~~~~~p---~~~~----------~~~~~~~~p~gv~~d~~ 77 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQ------DGLIPFP---PQSG----------NAIITFDTVLGIKSDGN 77 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEET------TEEEESC---CCCS----------SCCCCCSCEEEEEECSS
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECC------CCeecCC---Cccc----------CcccceeEeeEEEEcCC
Confidence 56789999999987777542 34467777641 1111000 0000 01125567899999999
Q ss_pred CCeEEEEc------CCeEEEEECCCceEEEEeeCC------CCCeeEEEEecCCCCEEEEEe---CCCcEEEEEeecceE
Q 001319 816 DSYVMSAT------GGKISLFNMMTFKVMTTFMSP------PPASTFLAFHPQDNNIIAIGT---EDSTIHIYNVRVDEV 880 (1101)
Q Consensus 816 g~~la~~~------dg~i~vwd~~~~~~~~~~~~~------~~~i~~l~~s~~~~~~la~g~---~dg~v~iwd~~~~~~ 880 (1101)
|++.++.. +++|.+||+.+++.+..+..+ ...+..++++++++..+++.. .++.|.+||+.+++.
T Consensus 78 g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~ 157 (343)
T 2qe8_A 78 GIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLA 157 (343)
T ss_dssp SEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCE
T ss_pred CcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCE
Confidence 98776653 478999999999977766532 234688999983455555555 678999999998888
Q ss_pred EEeeccCCCCee-EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CC
Q 001319 881 KSKLKGHQKRIT-GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ET 957 (1101)
Q Consensus 881 ~~~~~~h~~~V~-~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~ 957 (1101)
...+.+|..... ...+.++|..+.+.+.|+.++.|. ..+..++|+|||+.|.++. ..
T Consensus 158 ~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~--------------------~~~~gia~s~dg~~ly~~~~~~~ 217 (343)
T 2qe8_A 158 ARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPH--------------------LGVNGIVLDAENEWLYLSPMHST 217 (343)
T ss_dssp EEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCC--------------------CCEEEEEECTTSCEEEEEESSCS
T ss_pred EEEecCCCcccccccceeECCEEEEeccCCCceecee--------------------cccceeEeccCCCEEEEEeCCCC
Confidence 777766533211 145566787888888888876663 2345799999999888865 33
Q ss_pred eEEEEEcCC---ce-----e---eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCC
Q 001319 958 QLAIYDASK---ME-----R---IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSP 1026 (1101)
Q Consensus 958 ~i~v~d~~~---~~-----~---~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 1026 (1101)
.+..++... +. . +..+ .. ......++++++|.++++...++.|.+||..+++......
T Consensus 218 ~l~~~~~~~~~~~~~~~~~~~~~~~~~-g~---~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~~~~~~------- 286 (343)
T 2qe8_A 218 SMYRIKSADLSNLQLTDAELGSKIERY-SE---KPICDGISIDKDHNIYVGDLAHSAIGVITSADRAYKLLVT------- 286 (343)
T ss_dssp EEEEEEHHHHTCTTCCHHHHHTTCEEE-EE---CCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEEEEEEE-------
T ss_pred eEEEEEHHHhcCCCCChhhhhcceEec-cc---CCCCceEEECCCCCEEEEccCCCeEEEEECCCCCEEEEEE-------
Confidence 555554321 10 0 0111 11 2345679999999999999899999999996676433332
Q ss_pred cccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEe
Q 001319 1027 SVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVME 1063 (1101)
Q Consensus 1027 ~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd 1063 (1101)
......+.++++.+ ++.++++.+..+.+.+|.
T Consensus 287 ----~~~~~~p~~va~~~-~g~l~v~~~~~~~~~~f~ 318 (343)
T 2qe8_A 287 ----DEKLSWTDSFNFGS-DGYLYFDCNQLHHSAPLN 318 (343)
T ss_dssp ----CGGGSCEEEEEECT-TSCEEEEECCGGGSGGGB
T ss_pred ----CCceecCCeeEECC-CCcEEEEeCccccccccc
Confidence 11234678999999 688888887666665554
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=3.7e-10 Score=137.05 Aligned_cols=244 Identities=11% Similarity=0.115 Sum_probs=158.3
Q ss_pred ccCCccEEEEEEccCCCEEEEEE-----CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc--
Q 001319 403 KDVPISVSRVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-- 475 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~-- 475 (1101)
.+|...+..++|||||++||.+. .+..|++||+++|+.+.. .+.+ .....++|+ ||+ .|+.++.+.
T Consensus 125 ~~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~--~~~~--~k~~~~~Ws-Dg~--~l~y~~~~~~~ 197 (693)
T 3iuj_A 125 PDGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLET--PLKD--VKFSGISWL-GNE--GFFYSSYDKPD 197 (693)
T ss_dssp TTSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEE--EEEE--EESCCCEEE-TTT--EEEEEESSCCC
T ss_pred CCCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcc--ccCC--ceeccEEEe-CCC--EEEEEEecCcc
Confidence 34666899999999999999643 235799999999985432 1111 113578999 999 455555553
Q ss_pred -----------eEEEEE-cCCc----eeEEeec-CCcCeEEEecccCCCccEEEEecc----CCeEEEEecCCCC-eeee
Q 001319 476 -----------LIKVWE-LSGR----KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI----DGKIKAWLYDTMG-SRVD 533 (1101)
Q Consensus 476 -----------~v~iwd-~~~~----~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~----d~~i~~wd~~~~~-~~~~ 533 (1101)
.|++|+ -++. ++..... |...+..+.+++ ||++|+.... +..|.+||+.++. ....
T Consensus 198 ~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~ 275 (693)
T 3iuj_A 198 GSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTE--DDRFLLISAANSTSGNRLYVKDLSQENAPLLT 275 (693)
T ss_dssp -------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECT--TSCEEEEEEESSSSCCEEEEEETTSTTCCCEE
T ss_pred cccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcC--CCCEEEEEEccCCCCcEEEEEECCCCCCceEE
Confidence 499999 4443 2333333 444567788876 6677654332 2589999988764 3334
Q ss_pred ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee--EEEecccCCcceEEEEEeCCCCEEEEEeC-CC--c
Q 001319 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGE-DS--Q 608 (1101)
Q Consensus 534 ~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~-dg--~ 608 (1101)
+..+....... ++++|..++..+........|..+|+.++.. .+.+..+....+ .|++++++|+.... ++ .
T Consensus 276 l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~---~~s~~g~~lv~~~~~~g~~~ 351 (693)
T 3iuj_A 276 VQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL---TVHSGSGYLFAEYMVDATAR 351 (693)
T ss_dssp EECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE---EEEEETTEEEEEEEETTEEE
T ss_pred EeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE---EEEEECCEEEEEEEECCeeE
Confidence 44444444444 6778887776654322357899999988754 344555544333 88999998888664 43 6
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC----CcEEEEEcccc
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIG 661 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----~~i~iwd~~~~ 661 (1101)
|++|++..+. ...+.... ...+..+.+++++..++....+ +.+..||+.++
T Consensus 352 l~~~d~~g~~-~~~l~~p~-~~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g 406 (693)
T 3iuj_A 352 VEQFDYEGKR-VREVALPG-LGSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSG 406 (693)
T ss_dssp EEEECTTSCE-EEEECCSS-SSEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTC
T ss_pred EEEEECCCCe-eEEeecCC-CceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCC
Confidence 8999987544 44444322 2245667778888877766554 78999998766
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.24 E-value=4.5e-09 Score=114.50 Aligned_cols=224 Identities=14% Similarity=0.046 Sum_probs=150.6
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
-..+.+|+|+++.+++++..++.|..||..+++... +. ....+.+++|+|+|+++++.
T Consensus 50 ~~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~--------------------~~-~~~~v~~i~~~~dg~l~v~~- 107 (326)
T 2ghs_A 50 LGEGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------HA-LPFMGSALAKISDSKQLIAS- 107 (326)
T ss_dssp BEEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------EE-CSSCEEEEEEEETTEEEEEE-
T ss_pred CCcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE--------------------EE-CCCcceEEEEeCCCeEEEEE-
Confidence 457889999877788888888999999998765321 11 23579999999999987754
Q ss_pred CCCeEEEEeecCCcccccceeee-c-ccCcEEEEEEecCCCceEEEEecC------CceEEEEEcCCceeEEeecCCcCe
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQID-A-HVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~-~-h~~~V~~l~~s~d~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~h~~~v 497 (1101)
.+ .|.+||..+++... +.... + ....+++++++|+|+ ++++... .+.|..++ +++. ..+..+....
T Consensus 108 ~~-gl~~~d~~~g~~~~-~~~~~~~~~~~~~~~i~~d~~G~--l~v~~~~~~~~~~~~~l~~~~-~g~~-~~~~~~~~~~ 181 (326)
T 2ghs_A 108 DD-GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVA-KGKV-TKLFADISIP 181 (326)
T ss_dssp TT-EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEE-TTEE-EEEEEEESSE
T ss_pred CC-CEEEEECCCCcEEE-EeeCCCCCCCCCCCCEEECCCCC--EEEEeCCCcCCCCceEEEEEe-CCcE-EEeeCCCccc
Confidence 44 49999998876432 11111 1 124689999999998 4444331 24555566 5543 3333333456
Q ss_pred EEEecccCCCccEE-EEeccCCeEEEEecC--CC-Ce-----eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEE
Q 001319 498 YSICPHHKENIQFI-FSTAIDGKIKAWLYD--TM-GS-----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVE 568 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l-~s~~~d~~i~~wd~~--~~-~~-----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~i 568 (1101)
..++|++ +++.+ ++.+.++.|.+|+++ ++ .. ...+......+..++++++|++.++... .+.|.+
T Consensus 182 ~~i~~s~--dg~~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~----~~~v~~ 255 (326)
T 2ghs_A 182 NSICFSP--DGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDR 255 (326)
T ss_dssp EEEEECT--TSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEE
T ss_pred CCeEEcC--CCCEEEEEECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeC----CCEEEE
Confidence 7888876 55555 455567899999986 43 21 1122223446788999999987776542 568999
Q ss_pred EeCCCCeeEEEecccCCcceEEEEEe-CCCCEEEEEeC
Q 001319 569 WNESEGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVGE 605 (1101)
Q Consensus 569 wd~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~~ 605 (1101)
||. +++.+..+..... .+.+++|+ ++++.|++++.
T Consensus 256 ~d~-~g~~~~~i~~~~~-~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 256 YDT-DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp ECT-TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEEB
T ss_pred ECC-CCCEEEEEECCCC-CcEEEEEecCCCCEEEEEec
Confidence 998 5777777765543 68889998 88887766553
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-09 Score=126.67 Aligned_cols=200 Identities=12% Similarity=0.094 Sum_probs=126.5
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeecccC----------cE-EEEEEecCCCceEEEEecCCceEEEEE-cCCc
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG----------AV-NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR 485 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~----------~V-~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~ 485 (1101)
+..|++++.++.|.-+|.++|+.+-.. ..+.. .+ ..++. ++. .++.++.|+.|..+| .+|+
T Consensus 70 ~g~vyv~~~~~~v~AlD~~tG~~~W~~---~~~~~~~~~~~~~~~~~~~~~~~--~~g--~v~v~~~dg~l~AlDa~TG~ 142 (689)
T 1yiq_A 70 DGVMYTTGPFSVVYALDARDGRLIWKY---DPQSDRHRAGEACCDAVNRGVAV--WKG--KVYVGVLDGRLEAIDAKTGQ 142 (689)
T ss_dssp TTEEEEECGGGCEEEEETTTCCEEEEE---CCCCCGGGGGGCTTCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCC
T ss_pred CCEEEEEcCCCeEEEEECCCCceeEEE---cCCCCccccccccccCCCCccEE--ECC--EEEEEccCCEEEEEECCCCC
Confidence 566777778888999999999865432 11111 01 11222 244 577788899999999 8999
Q ss_pred eeEEeecC--CcCeEEEecccC-CCccEEEEec------cCCeEEEEecCCCCeeeeccCCC------------------
Q 001319 486 KLFNFEGH--EAPVYSICPHHK-ENIQFIFSTA------IDGKIKAWLYDTMGSRVDYDAPG------------------ 538 (1101)
Q Consensus 486 ~~~~~~~h--~~~v~~v~~~~~-~~~~~l~s~~------~d~~i~~wd~~~~~~~~~~~~~~------------------ 538 (1101)
.+..+... ......+...|. .++ .++.++ .++.|+.||..+++.+..+....
T Consensus 143 ~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~ 221 (689)
T 1yiq_A 143 RAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKT 221 (689)
T ss_dssp EEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTT
T ss_pred EeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecccCCCcccccccccccccccc
Confidence 98777642 111111111110 033 444443 37899999999999887654210
Q ss_pred -------------CceEEEEEccCCCEEEEeecCCC-----------CC----ceEEEEeCCCCeeEEEecccCC-----
Q 001319 539 -------------HWCTTMLYSADGSRLFSCGTSKD-----------GD----SFLVEWNESEGTIKRTYAGFRK----- 585 (1101)
Q Consensus 539 -------------~~v~~~~~s~d~~~l~~~~~~~~-----------~~----~~i~iwd~~~~~~~~~~~~~~~----- 585 (1101)
.....++++|++..++.+..+.. ++ +.|..+|..+|+.+-.+.....
T Consensus 222 ~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~ 301 (689)
T 1yiq_A 222 WFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDY 301 (689)
T ss_dssp CCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCC
T ss_pred cCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccc
Confidence 01125788898888888764210 01 1499999999999887765311
Q ss_pred ---cceEEEEEeCCCC---EEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 586 ---KSNGVVQFDTTQN---HFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 586 ---~~v~~~~~~~~~~---~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
..........+|+ .++.++.+|.++++|..+|+.+.....
T Consensus 302 ~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~~~~~ 347 (689)
T 1yiq_A 302 TATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLSAKGI 347 (689)
T ss_dssp CCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred cCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEeccccc
Confidence 0111122223554 688889999999999999999877654
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=99.21 E-value=2.6e-09 Score=128.39 Aligned_cols=192 Identities=18% Similarity=0.171 Sum_probs=132.6
Q ss_pred CCeEEEEECCCceEEEEeeCCC-------------------------------CCeeEEEEecCCCCEEEEEeCCCc---
Q 001319 824 GGKISLFNMMTFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGTEDST--- 869 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~~~~~la~g~~dg~--- 869 (1101)
+|.|+.||..+|+.+..+.... .....++++| +..++++++.++.
T Consensus 182 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~-~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 182 RGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDP-ELNLLYIGVGNGSLWD 260 (689)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888777665210 1113578888 7788888887764
Q ss_pred ----------------EEEEEeecceEEEeecc--CC-------CCeeEEEEcCCCC---EEEEEeCCCcEEEEECCCCc
Q 001319 870 ----------------IHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSLN---ILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 870 ----------------v~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
|..+|..+|+.+..++. |. .++.......+|+ .++.++.+|.++++|..+|+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 340 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGE 340 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCC
Confidence 99999999999877653 21 1222222233565 78899999999999999998
Q ss_pred cccceEEee-----------------------c-CCC---------CCCCcceEEEcCCCCEEEEEe-------------
Q 001319 922 KRKSVTIHI-----------------------P-AGK---------TPTGDTRVQFNADQVRMLVVH------------- 955 (1101)
Q Consensus 922 ~~~~~~~~~-----------------------~-~~~---------~~~~v~~~~~s~d~~~l~~~~------------- 955 (1101)
.+....... . .+. -...-..++|+|+..++.+..
T Consensus 341 ~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~ 420 (689)
T 1yiq_A 341 LLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIMSAYYEHIPEA 420 (689)
T ss_dssp EEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEEECCSSC
T ss_pred EeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEeccccceeeeecccc
Confidence 763221110 0 000 001123478999888877631
Q ss_pred ---------------------------------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 956 ---------------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 956 ---------------------------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
++.|..||+.+++.+.....+ .++..-.++..|.++++|+.||
T Consensus 421 ~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagglvf~gt~dg 496 (689)
T 1yiq_A 421 PKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYV----TIFNGGTLSTAGNLVFEGSADG 496 (689)
T ss_dssp CCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTS
T ss_pred ccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCC----CCccCccceECCCEEEEECCCC
Confidence 267999999999988877653 2233345566788999999999
Q ss_pred cEEEEeCCCCceeEeeCC
Q 001319 1003 NIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 1003 ~i~vwd~~~~~~~~~~~~ 1020 (1101)
.++.||.++|+.+..+..
T Consensus 497 ~l~a~D~~tG~~lw~~~~ 514 (689)
T 1yiq_A 497 RVIAYAADTGEKLWEQPA 514 (689)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred cEEEEECCCCccceeeeC
Confidence 999999999999988763
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.21 E-value=2.5e-05 Score=91.93 Aligned_cols=533 Identities=10% Similarity=-0.006 Sum_probs=283.9
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeec-CCcCeE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-h~~~v~ 498 (1101)
+|+.+ ....|+..++++...... ..+ ..-..+..++|.+.+.. ++++-..++.|..++.+|..+..+.. ......
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~-~~~-~~~~~~~~l~~d~~~~~-lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~ 83 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVA-IPL-TGVKEASALDFDVTDNR-IYWTDISLKTISRAFMNGSALEHVVEFGLDYPE 83 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEE-CCC-CSCSCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSCCC
T ss_pred EEEEE-eCCcEEEEECCCCCcceE-EEc-CCCCceEEEEEECCCCE-EEEEECCCCeEEEEECCCCCcEEEEeCCCCCcc
Confidence 44444 456799999987543211 112 22346889999997765 56676778899999966654444332 223466
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.+++.+. .+++.++-...+.|.+.+++.................+++.|...+|...-. ...+.|...++.......
T Consensus 84 GlAvD~~-~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~--g~~~~I~r~~~dG~~~~~ 160 (628)
T 4a0p_A 84 GMAVDWL-GKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEW--GGKPKIDRAAMDGSERTT 160 (628)
T ss_dssp EEEEETT-TTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEE
T ss_pred eEEEEeC-CCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCC--CCCCEEEEEeCCCCceEE
Confidence 7777543 3456666667789999998765544444344456789999996666665432 125678888876554433
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEE
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKIL 656 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iw 656 (1101)
.... ......++++++++.|+.+. ..+.|..+|+..... ..+... ......+++.. + .|+.+. ..+.|...
T Consensus 161 l~~~--~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~-~v~~~~--l~~P~glav~~-~-~ly~tD~~~~~I~~~ 233 (628)
T 4a0p_A 161 LVPN--VGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNR-EVIADD--LPHPFGLTQYQ-D-YIYWTDWSRRSIERA 233 (628)
T ss_dssp EECS--CSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC-EEEEEC--CSCEEEEEEET-T-EEEEEETTTTEEEEE
T ss_pred EECC--CCCcceEEEccccCEEEEEECCCCEEEEEcCCCCce-EEeecc--CCCceEEEEEC-C-EEEEecCCCCEEEEE
Confidence 3332 22567799999888877765 567899999875443 223221 12335677754 3 455444 47788888
Q ss_pred EccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCC
Q 001319 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDT 736 (1101)
Q Consensus 657 d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 736 (1101)
|..++.. ...+..... .+..-..+.+..+. ..+.|......+ . .+-.....+......-+.....
T Consensus 234 dk~tg~~-~~~l~~~~~----~p~~i~v~~~~~q~-----~~n~C~~~ng~C---~--~~C~~~~~~~~~C~C~~g~~l~ 298 (628)
T 4a0p_A 234 NKTSGQN-RTIIQGHLD----YVMDILVFHSSRQS-----GWNECASSNGHC---S--HLCLAVPVGGFVCGCPAHYSLN 298 (628)
T ss_dssp ETTTCCS-CEEEECSCC----SCCEEEEECGGGSC-----CCCTTTTTGGGC---S--SEEEEETTTEEEEECSTTCEEC
T ss_pred ECCCCCc-eEEEecCCC----Ccceeeeeeecccc-----cceEeccCCCCc---c--hhhhcCCCCCeeEEcCCCcEec
Confidence 8766632 222221110 11111122222111 011110000000 0 0000000010110000000000
Q ss_pred cccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCC
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKND 816 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg 816 (1101)
....++.. + ...++.+ ....|+-..+... ......... ..-..+..++|.+.+
T Consensus 299 ~d~~~C~~--~-~~~Ll~s-~~~~i~~i~l~~~--------------------~~~~~~l~~---~~~~~~~~ld~d~~~ 351 (628)
T 4a0p_A 299 ADNRTCSA--P-TTFLLFS-QKSAINRMVIDEQ--------------------QSPDIILPI---HSLRNVRAIDYDPLD 351 (628)
T ss_dssp TTSSCEEC--C-SSEEEEE-ETTEEEEECCCTT--------------------CCCCEECCC---TTCSCEEEEEEETTT
T ss_pred ccCCcCcc--c-cceeeee-ccceEEEEecccc--------------------cCceEEEEe---hhcCCceEEEEecCC
Confidence 00001110 1 1122222 2223322221100 000000001 123457889999877
Q ss_pred CeEEEEc--CCeEEEEECCCceEEEEeeC------CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee-ccC
Q 001319 817 SYVMSAT--GGKISLFNMMTFKVMTTFMS------PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-KGH 887 (1101)
Q Consensus 817 ~~la~~~--dg~i~vwd~~~~~~~~~~~~------~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~-~~h 887 (1101)
..|..++ .+.|+.++.........+.. ....+..+++....+.+..+-+..+.|.+.++. |+....+ ...
T Consensus 352 ~~iy~sD~~~~~I~r~~~~g~~~~~v~~~~~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~-G~~~~~l~~~~ 430 (628)
T 4a0p_A 352 KQLYWIDSRQNMIRKAQEDGSQGFTVVVSSVPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLD-GRSVGVVLKGE 430 (628)
T ss_dssp TEEEEEETTTTEEEEEETTSCSCEEEEC--------CCCEEEEEEETTTTEEEEEETTTTEEEEEETT-SCEEEEEEECT
T ss_pred CeEEEEecCcceEEEEEcCCCCceEEEEcccccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECC-CCeEEEEEeCC
Confidence 7777665 57899998765433333322 234678999988345566666678899999986 4444333 334
Q ss_pred CCCeeEEEEcCC-CCEEEEEeCCC--cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEE
Q 001319 888 QKRITGLAFSTS-LNILVSSGADA--QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIY 962 (1101)
Q Consensus 888 ~~~V~~l~~s~d-~~~l~s~s~Dg--~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~ 962 (1101)
.....+|++.|. |.++++-.... .|...+++..... .. .. .. ......+++++++..|..++ .+.|..+
T Consensus 431 l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~-~l-~~---~~-l~~P~gla~D~~~~~LYw~D~~~~~I~~~ 504 (628)
T 4a0p_A 431 QDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTERE-VL-FF---SG-LSKPIALALDSRLGKLFWADSDLRRIESS 504 (628)
T ss_dssp TCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCE-EE-EC---SS-CSCEEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred CCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcE-EE-Ee---cc-CCCccEEEEeCCCCEEEEEeCCCCEEEEE
Confidence 567899999994 44444433222 4666666543221 11 11 11 14568899999988888865 5789999
Q ss_pred EcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 963 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 963 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
+++.... ..+.... ......+++.. +....+-...+.|...|..+|+....+.
T Consensus 505 ~~dG~~r-~~~~~~~--~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~~~i~ 557 (628)
T 4a0p_A 505 DLSGANR-IVLEDSN--ILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGRTKVQ 557 (628)
T ss_dssp ETTSCSC-EEEECSS--CSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCCEEEE
T ss_pred eCCCCce-EEEEcCC--CCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCcEEEe
Confidence 9865433 3332111 34456777654 4444455566788888888777555444
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.20 E-value=1.3e-08 Score=110.98 Aligned_cols=222 Identities=9% Similarity=0.043 Sum_probs=144.9
Q ss_pred EeEEEecCCCCe-EEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEee
Q 001319 807 VPCIALSKNDSY-VMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884 (1101)
Q Consensus 807 v~~~~~s~dg~~-la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~ 884 (1101)
..+.+|+|++.. +++.. ++.|..||..+++... +. ....+.++++++ +++++++. .+ .|++||..+++.....
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~-~~~~v~~i~~~~-dg~l~v~~-~~-gl~~~d~~~g~~~~~~ 125 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGRKTV-HA-LPFMGSALAKIS-DSKQLIAS-DD-GLFLRDTATGVLTLHA 125 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EE-CSSCEEEEEEEE-TTEEEEEE-TT-EEEEEETTTCCEEEEE
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EE-CCCcceEEEEeC-CCeEEEEE-CC-CEEEEECCCCcEEEEe
Confidence 567889998554 44444 6889999998876543 32 346799999999 78777654 44 4999998887654322
Q ss_pred cc---C-CCCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE
Q 001319 885 KG---H-QKRITGLAFSTSLNILVSSGA------DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 954 (1101)
Q Consensus 885 ~~---h-~~~V~~l~~s~d~~~l~s~s~------Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 954 (1101)
.. . ...+.+++++|+|+++++... .+.|..++ +++... ..... .....++|+||++.++++
T Consensus 126 ~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~-~~~~~------~~~~~i~~s~dg~~lyv~ 196 (326)
T 2ghs_A 126 ELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTK-LFADI------SIPNSICFSPDGTTGYFV 196 (326)
T ss_dssp CSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEE-EEEEE------SSEEEEEECTTSCEEEEE
T ss_pred eCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEE-eeCCC------cccCCeEEcCCCCEEEEE
Confidence 21 1 245899999999997776542 23455555 433221 11110 345689999999988775
Q ss_pred e--CCeEEEEEcC--Cc-eee--eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCc
Q 001319 955 H--ETQLAIYDAS--KM-ERI--RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1027 (1101)
Q Consensus 955 ~--d~~i~v~d~~--~~-~~~--~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 1027 (1101)
+ ++.|.+|+.. ++ ... ..+.........+..++++++|.++++...++.|.+||. +++.+..+..
T Consensus 197 ~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~------- 268 (326)
T 2ghs_A 197 DTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEV------- 268 (326)
T ss_dssp ETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEEC-------
T ss_pred ECCCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEEC-------
Confidence 4 6789999986 55 321 112111111456788999999998887777789999998 5776665542
Q ss_pred ccCCCCccceEEEEEe-cCCCCEE-EEEECC
Q 001319 1028 VLNGSQTVYPLVVAAH-PLEPNQF-AIGLTD 1056 (1101)
Q Consensus 1028 ~~~h~~~~~~~~l~~~-p~d~~~l-~s~~~D 1056 (1101)
+. ..+.+++|. + ++..| ++...+
T Consensus 269 ---~~--~~~~~~af~g~-d~~~L~vt~~~~ 293 (326)
T 2ghs_A 269 ---PG--KQTTCPAFIGP-DASRLLVTSARE 293 (326)
T ss_dssp ---SC--SBEEEEEEEST-TSCEEEEEEBCT
T ss_pred ---CC--CCcEEEEEecC-CCCEEEEEecCC
Confidence 12 246789998 7 55544 555444
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.8e-08 Score=112.53 Aligned_cols=297 Identities=11% Similarity=0.090 Sum_probs=181.2
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCC---------cCeE-EEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHE---------APVY-SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~---------~~v~-~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 535 (1101)
.++.++.++.|..+| .+|+.+..+.... ..+. .+.. ++..++.++.++.|..+|..+++......
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~ 130 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTV----SGGHVYIGSEKAQVYALNTSDGTVAWQTK 130 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEE----ETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCceE----eCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence 477778889999999 7899886665421 2222 2222 23578888899999999999999887665
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc----eEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS----NGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~----v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
............ + ..+++++. ++.|..+|..+|+.+..+....... ....... +..+++++.++.++.
T Consensus 131 ~~~~~~~~p~~~-~-~~v~v~~~----~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~ 202 (376)
T 3q7m_A 131 VAGEALSRPVVS-D-GLVLIHTS----NGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSA 202 (376)
T ss_dssp CSSCCCSCCEEE-T-TEEEEECT----TSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEE
T ss_pred CCCceEcCCEEE-C-CEEEEEcC----CCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEE
Confidence 543322222222 3 35555543 7889999999999887766532210 0112222 457888888999999
Q ss_pred EECCCCeeeEeeccCCCCC-----CCCeeEEec--CCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeee
Q 001319 612 WDMDNVNILTSTDAEGGLP-----NLPRLRFSK--EGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVA 684 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~-----~v~~v~~s~--~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~ 684 (1101)
+|..+++.+.......... .+..+...| .+..+++++.++.+..+|..++..
T Consensus 203 ~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~--------------------- 261 (376)
T 3q7m_A 203 VLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQI--------------------- 261 (376)
T ss_dssp EETTTCCEEEEEECCC-----------CCCCCCEEETTEEEEECTTSCEEEEETTTCCE---------------------
T ss_pred EECCCCcEEEEEecccCCCCcccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcE---------------------
Confidence 9999999887765432100 000010111 234555555566666666544411
Q ss_pred eeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEE
Q 001319 685 LKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLW 764 (1101)
Q Consensus 685 ~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w 764 (1101)
+|
T Consensus 262 ------------------------------------------------------------------------------~w 263 (376)
T 3q7m_A 262 ------------------------------------------------------------------------------MW 263 (376)
T ss_dssp ------------------------------------------------------------------------------EE
T ss_pred ------------------------------------------------------------------------------Ee
Confidence 01
Q ss_pred EecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC-
Q 001319 765 KWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS- 843 (1101)
Q Consensus 765 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~- 843 (1101)
... ......+... ++.+++...++.+..+|..+++.+.....
T Consensus 264 ~~~------------------------------------~~~~~~~~~~-~~~l~~~~~~g~l~~~d~~tG~~~w~~~~~ 306 (376)
T 3q7m_A 264 KRE------------------------------------LGSVNDFIVD-GNRIYLVDQNDRVMALTIDGGVTLWTQSDL 306 (376)
T ss_dssp EEC------------------------------------CCCEEEEEEE-TTEEEEEETTCCEEEEETTTCCEEEEECTT
T ss_pred ecc------------------------------------CCCCCCceEE-CCEEEEEcCCCeEEEEECCCCcEEEeeccc
Confidence 100 0011122222 33334444478899999999988877662
Q ss_pred CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeE-EEEcCCCCEEEEEeCCCcEEEEE
Q 001319 844 PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITG-LAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 844 ~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~-l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
....+...... +..|++++.+|.|+++|..+++.+.........+.. ... .+..|+.++.+|.|..|+
T Consensus 307 ~~~~~~~~~~~---~~~l~v~~~~g~l~~~d~~tG~~~~~~~~~~~~~~~~~~~--~~~~l~v~~~~G~l~~~~ 375 (376)
T 3q7m_A 307 LHRLLTSPVLY---NGNLVVGDSEGYLHWINVEDGRFVAQQKVDSSGFQTEPVA--ADGKLLIQAKDGTVYSIT 375 (376)
T ss_dssp TTSCCCCCEEE---TTEEEEECTTSEEEEEETTTCCEEEEEECCTTCBCSCCEE--ETTEEEEEBTTSCEEEEE
T ss_pred CCCcccCCEEE---CCEEEEEeCCCeEEEEECCCCcEEEEEecCCCcceeCCEE--ECCEEEEEeCCCEEEEEe
Confidence 22233444443 356778899999999999999988777653344332 222 245788899999999887
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.19 E-value=3.4e-10 Score=123.34 Aligned_cols=183 Identities=14% Similarity=0.142 Sum_probs=132.8
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF 425 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~ 425 (1101)
.+..+++++... ++++|+.+ .+++|++.......... ...++......+.. |+.++| |+++|+++
T Consensus 39 ~~nlLais~~~g-ll~a~~~~-~l~v~~~~~l~~~~~~~---------~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~- 103 (388)
T 1xip_A 39 SLQNLDISNSKS-LFVAASGS-KAVVGELQLLRDHITSD---------STPLTFKWEKEIPD-VIFVCF--HGDQVLVS- 103 (388)
T ss_dssp CCBCEEEETTTT-EEEEEETT-EEEEEEHHHHHHHHHSS---------SCCCCCSEEEECTT-EEEEEE--ETTEEEEE-
T ss_pred cccEEEEcCCCC-EEEEeCCC-EEEEEEhhHhhhhhccc---------cccccceEEeeCCC-eeEEEE--CCCEEEEE-
Confidence 689999999998 56777777 56669976543111000 00011111233566 999999 99999999
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEeccc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHH 504 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~ 504 (1101)
.++.|++||+.+..... ....|..+|.++.+.+. -+++++.||.|.+|| .++.... +...|.+++|++
T Consensus 104 ~~~~l~v~dv~sl~~~~---~~~~~~~~v~~i~~~~p----~~av~~~dG~L~v~dl~~~~~~~----~~~~Vs~v~WSp 172 (388)
T 1xip_A 104 TRNALYSLDLEELSEFR---TVTSFEKPVFQLKNVNN----TLVILNSVNDLSALDLRTKSTKQ----LAQNVTSFDVTN 172 (388)
T ss_dssp ESSEEEEEESSSTTCEE---EEEECSSCEEEEEECSS----EEEEEETTSEEEEEETTTCCEEE----EEESEEEEEECS
T ss_pred cCCcEEEEEchhhhccC---ccceeecceeeEEecCC----CEEEEECCCCEEEEEccCCcccc----ccCCceEEEEcC
Confidence 88999999998865333 45677888988887755 277788999999999 5565543 456899999988
Q ss_pred CCCccEEEEeccCCeEEEEecCCCCe--eeec------c---CCCCceEEEEEccCCCEEEEeec
Q 001319 505 KENIQFIFSTAIDGKIKAWLYDTMGS--RVDY------D---APGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 505 ~~~~~~l~s~~~d~~i~~wd~~~~~~--~~~~------~---~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
+| ++.|..||++++|+.+.... ..++ . .+...|.++.|.+++.++++-..
T Consensus 173 --kG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~~ 233 (388)
T 1xip_A 173 --SQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFGN 233 (388)
T ss_dssp --SE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEEC
T ss_pred --Cc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEcC
Confidence 44 67899999999998877664 4344 2 35678999999999999887543
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.18 E-value=1.2e-05 Score=94.67 Aligned_cols=526 Identities=8% Similarity=-0.002 Sum_probs=268.5
Q ss_pred CCCeEEEEeecCCc-ccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCce--eEEeecCCcCeEEEec
Q 001319 426 TKHLIQLYSYAGSN-DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK--LFNFEGHEAPVYSICP 502 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~-~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~--~~~~~~h~~~v~~v~~ 502 (1101)
....|+..|+.+.. ... .+.........++|++.+.. ++++-...+.|..++.+|.. ...+.........+++
T Consensus 16 ~~~~I~~i~~~~~~~~~~---~~~~~~~~~~~ld~~~~~~~-ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAv 91 (619)
T 3s94_A 16 NRRDLRLVDATNGKENAT---IVVGGLEDAAAVDFVFSHGL-IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLAC 91 (619)
T ss_dssp CSSBEEEECCC------------CBCCSCEEEEEEETTTTE-EEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEE
T ss_pred ccccEEEEeCCCCcceEE---EEEcCCCceEEEEEEeCCCE-EEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEE
Confidence 34568888887642 111 12233445789999997775 55565667889888855542 2233333356788888
Q ss_pred ccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecc
Q 001319 503 HHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
.+. ++.+.++-...+.|.+.+++.................+++.|.+.+|+..-. ...+.|...++...........
T Consensus 92 D~~-~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~--g~~~~I~r~~~dG~~~~~l~~~ 168 (619)
T 3s94_A 92 DWL-GEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDW--GEVPKIERAGMDGSSRFIIINS 168 (619)
T ss_dssp ETT-TTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEEC--SSSCEEEEEETTSCSCEEEECS
T ss_pred Eec-CCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEecc--CCCCEEEEEECCCCceEEEEeC
Confidence 654 3356666677889999998766544444344456789999997666665432 1245677777654333222222
Q ss_pred cCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEE-EcCCcEEEEEccc
Q 001319 583 FRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVT-TADNGFKILANAI 660 (1101)
Q Consensus 583 ~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~-~~d~~i~iwd~~~ 660 (1101)
.-.....++++++++.|+.+. ..+.|...|+............ ......+++..+ .|+.+ ...+.|...|..+
T Consensus 169 -~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~--~~~P~gi~~~~~--~ly~td~~~~~V~~~d~~t 243 (619)
T 3s94_A 169 -EIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGS--LPHPFALTLFED--ILYWTDWSTHSILACNKYT 243 (619)
T ss_dssp -SCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC-----------CCCEEESSS--EEEEECTTTCSEEEEESSS
T ss_pred -CCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCC--CCCceEEEEeCC--EEEEecCCCCEEEEEECCC
Confidence 223567799999877777765 5678999998764443332211 112357777654 45544 4567888888877
Q ss_pred cccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC-CCeEEEEcCCCCCCccc
Q 001319 661 GLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS-GQCRLVTMPESTDTSSK 739 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~ 739 (1101)
+.. ...+.... ..+..-..+++..+... .+.|......+ . .+-..... .......-+...-....
T Consensus 244 g~~-~~~i~~~~----~~p~~i~v~~~~~qp~~----~n~C~~~ng~C---s--~lCl~~~~~~~~~C~C~~g~~l~~d~ 309 (619)
T 3s94_A 244 GEG-LREIHSDI----FSPMDIHAFSQQRQPNA----TNPCGIDNGGC---S--HLCLMSPVKPFYQCACPTGVKLLENG 309 (619)
T ss_dssp CCC-CEECCSCC----CCCSEEEECCGGGSCCC----CCTTTTTGGGC---S--SEEEECSSTTSEEEECCTTCCBCTTS
T ss_pred Ccc-cEEEecCC----CCCcEEEEEccccCCCc----cccccCCCCcc---c--ceEECCCCCCCceEeCCchheecccC
Confidence 632 22222111 01111112222211100 00010000000 0 00000000 00000000000000000
Q ss_pred EEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeE
Q 001319 740 VVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYV 819 (1101)
Q Consensus 740 i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l 819 (1101)
.++. +....++..+..+.|+..++..... ......+ ..-..+.+++|.+.+..|
T Consensus 310 ~~C~---~~~~~~Ll~~~~~~i~~i~l~~~~~--------------------~~~~~~~---~~l~~~~~ld~d~~~~~l 363 (619)
T 3s94_A 310 KTCK---DGATELLLLARRTDLRRISLDTPDF--------------------TDIVLQL---EDIRHAIAIDYDPVEGYI 363 (619)
T ss_dssp SCBC---SSCSEEEEEEESSCEEEEESSSTTC--------------------CCEECCC---SCCSSEEEEEEETTTTEE
T ss_pred cccC---CCCceEEEEEcccceEEEecCCCcc--------------------ceeEEec---cccCccEEEEEEcCCCeE
Confidence 0000 0011122222233444333321110 0000001 123457789999866666
Q ss_pred EEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEc
Q 001319 820 MSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFS 897 (1101)
Q Consensus 820 a~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s 897 (1101)
..++ .+.|+.+++........+.........+++...++++.++-...+.|.+.++........+...-....+|++.
T Consensus 364 y~sD~~~~~I~r~~~~g~~~~~v~~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~~~~~l~~~~l~~P~~iavd 443 (619)
T 3s94_A 364 YWTDDEVRAIRRSFIDGSGSQFVVTAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGTMRKILISEDLEEPRAIVLD 443 (619)
T ss_dssp EEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCCSEEEEEEE
T ss_pred EEEeCCCCeEEEEEcCCCccEEEEECCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCCeEEEEEECCCCCeeeEEEE
Confidence 5554 67899999876544444443345677899986355666666677899999887543222223344568999999
Q ss_pred CCCCEEEEEeC--CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCceeeeEe
Q 001319 898 TSLNILVSSGA--DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 898 ~d~~~l~s~s~--Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~~ 973 (1101)
|....|..+.. ...|...+++..... . +- .. .......+++++++..|..++ .+.|..++++........
T Consensus 444 p~~G~ly~tD~g~~~~I~r~~~dG~~~~-~--l~--~~-~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~ 517 (619)
T 3s94_A 444 PMVGYMYWTDWGEIPKIERAALDGSDRV-V--LV--NT-SLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLV 517 (619)
T ss_dssp TTTTEEEEEECSSSCEEEEEETTSCSCE-E--EE--CS-SCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEE
T ss_pred cCCCcEEEecCCCCCEEEEEccCCCccE-E--EE--eC-CCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEe
Confidence 97555554432 356777777653321 1 11 11 115677899999888888765 568888988654432222
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCce
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFA-TFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s-~~~dg~i~vwd~~~~~~ 1014 (1101)
...-.|. ..+++..+ +|+. -...+.|...|..+|..
T Consensus 518 ~~~l~~P---~glav~~~--~ly~tD~~~~~I~~~~k~~g~~ 554 (619)
T 3s94_A 518 EDKIPHI---FGFTLLGD--YVYWTDWQRRSIERVHKRSAER 554 (619)
T ss_dssp ECCCCSS---CCEEEETT--EEEEECTTSSCEEEEESSSCCE
T ss_pred ccCCCCc---EEEEEECC--EEEEeecCCCeEEEEEcCCCce
Confidence 2221122 34454332 4444 44566787778777743
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.17 E-value=5.2e-09 Score=112.96 Aligned_cols=232 Identities=12% Similarity=0.070 Sum_probs=152.4
Q ss_pred ccCCccEEEEEEccCCC-EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 403 KDVPISVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 403 ~~h~~~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..........+|+|+|+ +++++..++.|..|+. +++ .. .+..+...+..++++++|+ ++++...++.|.+|+
T Consensus 41 ~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~-~~---~~~~~~~~~~gl~~d~dG~--l~v~~~~~~~v~~~~ 113 (305)
T 3dr2_A 41 YDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGT-VD---VLLDATAFTNGNAVDAQQR--LVHCEHGRRAITRSD 113 (305)
T ss_dssp ECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSC-EE---EEEESCSCEEEEEECTTSC--EEEEETTTTEEEEEC
T ss_pred ecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCC-EE---EEeCCCCccceeeECCCCC--EEEEECCCCEEEEEC
Confidence 33455678899999999 5556667889999988 443 22 3445667899999999998 566666668899999
Q ss_pred cCCceeEEeecC-----CcCeEEEecccCCCccEEEE----ecc-------------CCeEEEEecCCCCeeeeccCCCC
Q 001319 482 LSGRKLFNFEGH-----EAPVYSICPHHKENIQFIFS----TAI-------------DGKIKAWLYDTMGSRVDYDAPGH 539 (1101)
Q Consensus 482 ~~~~~~~~~~~h-----~~~v~~v~~~~~~~~~~l~s----~~~-------------d~~i~~wd~~~~~~~~~~~~~~~ 539 (1101)
.+|+.. .+..+ ...+..+++.+ +|.+.++ |.. .+.|..||..+++..... ...
T Consensus 114 ~~g~~~-~~~~~~~~~~~~~~~~i~~d~--dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~--~~~ 188 (305)
T 3dr2_A 114 ADGQAH-LLVGRYAGKRLNSPNDLIVAR--DGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA--DLD 188 (305)
T ss_dssp TTSCEE-EEECEETTEECSCCCCEEECT--TSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE--EES
T ss_pred CCCCEE-EEEeccCCCccCCCCCEEECC--CCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe--cCC
Confidence 556543 22211 12356778765 6677775 332 245667766555443332 334
Q ss_pred ceEEEEEccCCCEEEEeecCC--CCCceEEEEeCCCCeeE--EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 540 WCTTMLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIK--RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~--~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
....++|+||++.|+.+.... .+.+.|++|++..+... ..+..........++++++|+ |.++..+ .|.+|+.
T Consensus 189 ~p~gl~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~-lwv~~~~-gv~~~~~- 265 (305)
T 3dr2_A 189 HPNGLAFSPDEQTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGW-LWSSSGT-GVCVFDS- 265 (305)
T ss_dssp SEEEEEECTTSSEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSC-EEECCSS-EEEEECT-
T ss_pred CCcceEEcCCCCEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCC-EEEecCC-cEEEECC-
Confidence 567899999999887765310 01268999998765421 122111122345588999998 4444444 4999998
Q ss_pred CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
.++.+..+.... .+..++|+++++.|++++.++.
T Consensus 266 ~g~~~~~~~~~~---~~~~~~f~~d~~~L~it~~~~l 299 (305)
T 3dr2_A 266 DGQLLGHIPTPG---TASNCTFDQAQQRLFITGGPCL 299 (305)
T ss_dssp TSCEEEEEECSS---CCCEEEECTTSCEEEEEETTEE
T ss_pred CCCEEEEEECCC---ceeEEEEeCCCCEEEEEcCCeE
Confidence 566777766543 4789999999999988887643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=99.16 E-value=8.2e-10 Score=120.22 Aligned_cols=266 Identities=6% Similarity=-0.080 Sum_probs=167.6
Q ss_pred eEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE--------
Q 001319 358 TLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-------- 425 (1101)
Q Consensus 358 ~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-------- 425 (1101)
+++++...++ .|.+.|..+++.+.. +-.+. .+ .+++||||++++++.
T Consensus 33 ~~yV~~~~~~~~~d~vsvID~~t~~v~~~------------------i~vG~-~P--~i~~spDg~~lyVan~~~~r~~~ 91 (368)
T 1mda_H 33 RSHITLPAYFAGTTENWVSCAGCGVTLGH------------------SLGAF-LS--LAVAGHSGSDFALASTSFARSAK 91 (368)
T ss_dssp EEEEEECTTTCSSEEEEEEETTTTEEEEE------------------EEECT-TC--EEEECTTSSCEEEEEEEETTTTS
T ss_pred eEEEECCccCCccceEEEEECCCCeEEEE------------------EeCCC-CC--ceEECCCCCEEEEEccccccccc
Confidence 3555655555 888999999888753 12222 34 799999999999986
Q ss_pred --CCCeEEEEeecCCcccccceeeecc-----cCcEEEEEEecCCCceEEEEec--CCceEEE--EE-cCCceeEEeecC
Q 001319 426 --TKHLIQLYSYAGSNDLRQHSQIDAH-----VGAVNDLAFAYPNKLLCVVTCG--DDKLIKV--WE-LSGRKLFNFEGH 493 (1101)
Q Consensus 426 --~d~~i~vwd~~~~~~~~~~~~l~~h-----~~~V~~l~~s~d~~~~~l~s~~--~d~~v~i--wd-~~~~~~~~~~~h 493 (1101)
.++.|.+||..+++.+..+. +.+. ......++|+|||++ ++.+. .+..|.+ +| .+ +..+.-.
T Consensus 92 G~~~~~VsviD~~T~~vv~~I~-v~~~~~~~~g~~P~~ia~SpDGk~--lyVan~~~~~~v~V~~iD~~t---v~~i~v~ 165 (368)
T 1mda_H 92 GKRTDYVEVFDPVTFLPIADIE-LPDAPRFSVGPRVHIIGNCASSAC--LLFFLFGSSAAAGLSVPGASD---DQLTKSA 165 (368)
T ss_dssp SSEEEEEEEECTTTCCEEEEEE-ETTSCSCCBSCCTTSEEECTTSSC--EEEEECSSSCEEEEEETTTEE---EEEEECS
T ss_pred CCCCCEEEEEECCCCCEEEEEE-CCCccccccCCCcceEEEcCCCCE--EEEEccCCCCeEEEEEEchhh---ceEEECC
Confidence 36789999999998776432 1100 123567999999995 44443 3567888 99 44 4444311
Q ss_pred CcCeEEEecccCCCccEEEEeccCCeEEEEecCC-----CCeee----eccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-----MGSRV----DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-----~~~~~----~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
+. +.+.+.+. ..+++.+.|+.+.+.++++ ++... .+.....+. . ++++..++..+. +
T Consensus 166 -~~---~~~~p~g~-~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~---~-~~~~~~~~~vs~-----~ 231 (368)
T 1mda_H 166 -SC---FHIHPGAA-ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAA---Q-ANYPGMLVWAVA-----S 231 (368)
T ss_dssp -SC---CCCEEEET-TEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCE---E-ETTTTEEEECBS-----S
T ss_pred -Cc---eEEccCCC-eEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCcc---c-cccCCEEEEEcC-----C
Confidence 11 12233333 3455667788888888776 22111 011112222 3 566666665542 5
Q ss_pred eEEEEeCCCCe--eEEEeccc------CC---cceEEEEEeCCCCEEEEEeC---------CCcEEEEECCCCeeeEeec
Q 001319 565 FLVEWNESEGT--IKRTYAGF------RK---KSNGVVQFDTTQNHFLAVGE---------DSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 565 ~i~iwd~~~~~--~~~~~~~~------~~---~~v~~~~~~~~~~~l~~~~~---------dg~i~iwd~~~~~~~~~~~ 624 (1101)
.+.+.|..++. .+..+... .. .....++++|++++++++.. ++.+.++|+.+++.+..+.
T Consensus 232 ~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~ 311 (368)
T 1mda_H 232 SILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS 311 (368)
T ss_dssp CCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE
T ss_pred EEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEE
Confidence 78888886532 23322111 00 01222689999999887543 2356699999999988887
Q ss_pred cCCCCCCCCeeEEecCCCE-EEEEE-cCCcEEEEEccccccccccc
Q 001319 625 AEGGLPNLPRLRFSKEGNL-LAVTT-ADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~-l~~~~-~d~~i~iwd~~~~~~~~~~~ 668 (1101)
... ....++|+|||+. +++.. .++.|.++|+.+. +.++.+
T Consensus 312 vg~---~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~-kvv~~I 353 (368)
T 1mda_H 312 NGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353 (368)
T ss_dssp EEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEEC
T ss_pred CCC---CcceEEECCCCCEEEEEccCCCCeEEEEECCCC-cEEEEE
Confidence 544 3689999999984 55555 4899999999987 444444
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1.6e-08 Score=121.28 Aligned_cols=233 Identities=10% Similarity=0.079 Sum_probs=148.1
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeeccc---------CcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV---------GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL 487 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~---------~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~ 487 (1101)
+..|++++.++.|.-+|.++|+.+-... ..... .....+++ ++. .++.++.|+.|..+| .+|+.+
T Consensus 77 ~g~vyv~~~~~~v~AlD~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~a~--~~~--~v~v~~~dg~l~alD~~tG~~~ 151 (677)
T 1kb0_A 77 DGIMYVSASWSVVHAIDTRTGNRIWTYD-PQIDRSTGFKGCCDVVNRGVAL--WKG--KVYVGAWDGRLIALDAATGKEV 151 (677)
T ss_dssp TTEEEEECGGGCEEEEETTTTEEEEEEC-CCCCGGGGGGSSSCSCCCCCEE--ETT--EEEEECTTSEEEEEETTTCCEE
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEc-CCCCccccccccccCCCCCceE--ECC--EEEEEcCCCEEEEEECCCCCEE
Confidence 5566677778889999999887654221 11100 00112333 344 577788899999999 899999
Q ss_pred EEeecC-C----cCeEEEecccCCCccEEEEecc------CCeEEEEecCCCCeeeeccCCCCc----------------
Q 001319 488 FNFEGH-E----APVYSICPHHKENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPGHW---------------- 540 (1101)
Q Consensus 488 ~~~~~h-~----~~v~~v~~~~~~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~~~---------------- 540 (1101)
..+..+ . ..+.+ .|.-.+..++.++. ++.|+.||..+++.+..+......
T Consensus 152 W~~~~~~~~~~~~~~~~---~p~v~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~ 228 (677)
T 1kb0_A 152 WHQNTFEGQKGSLTITG---APRVFKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAART 228 (677)
T ss_dssp EEEETTTTCCSSCBCCS---CCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTT
T ss_pred eeecCCcCcCcCccccc---CcEEECCEEEEEecccccCCCCEEEEEECCCCcEEEEeccCCCCcccccccccccccccc
Confidence 888754 2 11111 11111235555543 799999999999988766432211
Q ss_pred ----------------eEEEEEccCCCEEEEeecCCC-----------CC----ceEEEEeCCCCeeEEEecccCC----
Q 001319 541 ----------------CTTMLYSADGSRLFSCGTSKD-----------GD----SFLVEWNESEGTIKRTYAGFRK---- 585 (1101)
Q Consensus 541 ----------------v~~~~~s~d~~~l~~~~~~~~-----------~~----~~i~iwd~~~~~~~~~~~~~~~---- 585 (1101)
...+++++++..++.+..+.. ++ +.|..+|..+|+.+-.+.....
T Consensus 229 w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd 308 (677)
T 1kb0_A 229 WDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWD 308 (677)
T ss_dssp SCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSC
T ss_pred ccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccc
Confidence 135788899888887764210 11 2599999999999887764321
Q ss_pred ----cceEEEEEeCCC---CEEEEEeCCCcEEEEECCCCeeeEeeccCCCC-----------------------------
Q 001319 586 ----KSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL----------------------------- 629 (1101)
Q Consensus 586 ----~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~----------------------------- 629 (1101)
.....+....+| +.++.++.+|.++++|..+|+.+..+......
T Consensus 309 ~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~ 388 (677)
T 1kb0_A 309 YTSTQPMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPG 388 (677)
T ss_dssp CCCCSCCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSC
T ss_pred cccCCCcEEEecccCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcC
Confidence 112223344467 67888999999999999999998766532100
Q ss_pred ----CCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 630 ----PNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 630 ----~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
..-..++++|++.++++...+-...++..
T Consensus 389 ~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~~~~ 421 (677)
T 1kb0_A 389 PYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDD 421 (677)
T ss_dssp TTCSSCSSCCEEETTTTEEEEEEEECCCEEEEC
T ss_pred cccccCCCCceEcCCCCEEEEeChhcceeeecc
Confidence 00125788999888888877655555543
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=99.15 E-value=3.4e-08 Score=110.36 Aligned_cols=223 Identities=8% Similarity=0.024 Sum_probs=142.9
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecc-------cCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeE
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH-------VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLF 488 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h-------~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~ 488 (1101)
++..|.+++.++.|..+|.++|+.+-... +... ...+.+.-.. ++. .++.++.++.|..+| .+|+.+.
T Consensus 52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~-~~~~~~~~~~~~~~~~~~~~~-~~~--~v~v~~~~g~l~a~d~~tG~~~W 127 (376)
T 3q7m_A 52 ADNVVYAADRAGLVKALNADDGKEIWSVS-LAEKDGWFSKEPALLSGGVTV-SGG--HVYIGSEKAQVYALNTSDGTVAW 127 (376)
T ss_dssp ETTEEEEECTTSEEEEEETTTCCEEEEEE-CCC---CCSCCCCCEEEEEEE-ETT--EEEEEETTSEEEEEETTTCCEEE
T ss_pred ECCEEEEEcCCCeEEEEEccCCceeeeec-CccccccccccCcccccCceE-eCC--EEEEEcCCCEEEEEECCCCCEEE
Confidence 36678888889999999999998654221 1111 2233332222 334 467778899999999 8899887
Q ss_pred EeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCce-----EEEEEccCCCEEEEeecCCCCC
Q 001319 489 NFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC-----TTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 489 ~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v-----~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
.............. .+..++.++.++.|..+|..+++............ ...... +..++.+.. +
T Consensus 128 ~~~~~~~~~~~p~~----~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~----~ 197 (376)
T 3q7m_A 128 QTKVAGEALSRPVV----SDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGD----N 197 (376)
T ss_dssp EEECSSCCCSCCEE----ETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCT----T
T ss_pred EEeCCCceEcCCEE----ECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcC----C
Confidence 76544322211121 12477888899999999999998887665433211 122222 345666553 7
Q ss_pred ceEEEEeCCCCeeEEEecccCCcc---------e-EEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCC
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKS---------N-GVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLP 633 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~---------v-~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~ 633 (1101)
+.|..+|..+|+.+.......... + ....+ .+..++.++.++.++.+|..+++.+...... ...
T Consensus 198 g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~----~~~ 271 (376)
T 3q7m_A 198 GRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVV--VNGVVFALAYNGNLTALDLRSGQIMWKRELG----SVN 271 (376)
T ss_dssp TEEEEEETTTCCEEEEEECCC-----------CCCCCCEE--ETTEEEEECTTSCEEEEETTTCCEEEEECCC----CEE
T ss_pred CEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEE--ECCEEEEEecCcEEEEEECCCCcEEeeccCC----CCC
Confidence 789999999999877665321100 0 11111 2567888889999999999999988776532 223
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
.+.. ++..+++++.++.+..+|..++
T Consensus 272 ~~~~--~~~~l~~~~~~g~l~~~d~~tG 297 (376)
T 3q7m_A 272 DFIV--DGNRIYLVDQNDRVMALTIDGG 297 (376)
T ss_dssp EEEE--ETTEEEEEETTCCEEEEETTTC
T ss_pred CceE--ECCEEEEEcCCCeEEEEECCCC
Confidence 3333 4667888888888888887766
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.14 E-value=4.1e-09 Score=115.54 Aligned_cols=301 Identities=11% Similarity=0.041 Sum_probs=184.8
Q ss_pred EEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeecc
Q 001319 456 DLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYD 535 (1101)
Q Consensus 456 ~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~ 535 (1101)
+.....++. +..++.++.|..||.+++.+..+..+...+.++.... ++ .++.++.+ |..+|. +++....+.
T Consensus 24 ~~~~d~~g~---l~v~t~~~~l~~~d~~g~~~~~~~~~~~~~~~~~~~~--~g-~l~v~t~~--l~~~d~-~g~~~~~~~ 94 (330)
T 3hxj_A 24 SPILAKNGT---IYLGSSNKNLYAINTDGSVKWFFKSGEIIECRPSIGK--DG-TIYFGSDK--VYAINP-DGTEKWRFD 94 (330)
T ss_dssp CCEECTTSC---EECSSTTTTTEEECTTSCEEESSCGGGEEEECCEETT--TT-EECCSSCE--EEEECC-CGGGGGGSC
T ss_pred CceEccCCe---EEEEcCCCEEEEECCCCcEEEEEecCCCcccceEEec--CC-cEEEecCc--EEEECC-CCcEEEEEE
Confidence 344555665 6777788889999977777665554444455555433 44 45566655 888875 444444443
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
..........+. + ..+..++. ++.|..+|.. ++....+..... .+..+...+++. ++.++.++.|+.+|..
T Consensus 95 ~~~~~~~~~~~~-~-~~l~v~t~----~~~l~~~d~~-g~~~~~~~~~~~-~~~~~~~~~~g~-l~vgt~~~~l~~~d~~ 165 (330)
T 3hxj_A 95 TKKAIVSDFTIF-E-DILYVTSM----DGHLYAINTD-GTEKWRFKTKKA-IYATPIVSEDGT-IYVGSNDNYLYAINPD 165 (330)
T ss_dssp C-----CCEEEE-T-TEEEEECT----TSEEEEECTT-SCEEEEEECSSC-CCSCCEECTTSC-EEEECTTSEEEEECTT
T ss_pred CCCCcccCceEE-C-CEEEEEec----CCEEEEEcCC-CCEEEEEcCCCc-eeeeeEEcCCCE-EEEEcCCCEEEEECCC
Confidence 333323333333 4 44555543 6789999988 777666654433 455566666665 6677888999999998
Q ss_pred CCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccccccc
Q 001319 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSS 695 (1101)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~ 695 (1101)
++....+..... .+.++.+.+++.+.+ ++ +.+..+| .++..
T Consensus 166 -g~~~~~~~~~~~--~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~-------------------------------- 206 (330)
T 3hxj_A 166 -GTEKWRFKTNDA--ITSAASIGKDGTIYF-GS--DKVYAIN-PDGTE-------------------------------- 206 (330)
T ss_dssp -SCEEEEEECSSC--CCSCCEECTTCCEEE-ES--SSEEEEC-TTSCE--------------------------------
T ss_pred -CCEeEEEecCCC--ceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcE--------------------------------
Confidence 777766654432 567777777776544 33 6677666 33210
Q ss_pred CCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCC
Q 001319 696 GTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSG 775 (1101)
Q Consensus 696 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~ 775 (1101)
+|....
T Consensus 207 -------------------------------------------------------------------~~~~~~------- 212 (330)
T 3hxj_A 207 -------------------------------------------------------------------KWNFYA------- 212 (330)
T ss_dssp -------------------------------------------------------------------EEEECC-------
T ss_pred -------------------------------------------------------------------EEEEcc-------
Confidence 011000
Q ss_pred CeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEec
Q 001319 776 KATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHP 855 (1101)
Q Consensus 776 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~ 855 (1101)
....+.++++.++|.+.+...++.+..+|. +++....+......+..+.+.+
T Consensus 213 ---------------------------~~~~~~~~~~~~~g~l~v~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~ 264 (330)
T 3hxj_A 213 ---------------------------GYWTVTRPAISEDGTIYVTSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGN 264 (330)
T ss_dssp ---------------------------SSCCCSCCEECTTSCEEEEETTTEEEEECT-TSCEEEEEECSSCCCSCCEECT
T ss_pred ---------------------------CCcceeceEECCCCeEEEEcCCCeEEEECC-CCCEeEEeeCCCCccccceEcC
Confidence 112244556666776666555677777764 5555555554444455566655
Q ss_pred CCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCC
Q 001319 856 QDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919 (1101)
Q Consensus 856 ~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~ 919 (1101)
++ .|.+++.+|.|..+|. +++.+..+......+.++...++|+ |..++.+|.+++.....
T Consensus 265 -~g-~l~v~t~~ggl~~~d~-~g~~~~~~~~~~~~~~~~~~d~~g~-l~~gt~~G~~~~~~~~~ 324 (330)
T 3hxj_A 265 -TD-TIYFGSYDGHLYAINP-DGTEKWNFETGSWIIATPVIDENGT-IYFGTRNGKFYALFNLE 324 (330)
T ss_dssp -TS-CEEEECTTCEEEEECT-TSCEEEEEECSSCCCSCCEECTTCC-EEEECTTSCEEEEEC--
T ss_pred -CC-eEEEecCCCCEEEECC-CCcEEEEEEcCCccccceEEcCCCE-EEEEcCCCeEEEEeccc
Confidence 44 4667888889999995 6777766665566778888877776 45588899999887765
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=1.1e-08 Score=115.17 Aligned_cols=260 Identities=14% Similarity=0.048 Sum_probs=173.4
Q ss_pred CCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE-e-CCCCEEEEEe------------------CCCc
Q 001319 549 DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF-D-TTQNHFLAVG------------------EDSQ 608 (1101)
Q Consensus 549 d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~-~-~~~~~l~~~~------------------~dg~ 608 (1101)
||++++.+.. .+..|.+.|+.+.++...+.-........+++ + |+++++++++ .++.
T Consensus 100 DG~~lfVnd~---~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~ 176 (595)
T 1fwx_A 100 DGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNV 176 (595)
T ss_dssp EEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEE
T ss_pred CCCEEEEEcC---CCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCce
Confidence 8999998754 46789999999999888665433335677777 5 9999999985 2457
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc---------------EEEEEccccccccccccCCCc
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG---------------FKILANAIGLRSLRAVENPPF 673 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~---------------i~iwd~~~~~~~~~~~~~~~~ 673 (1101)
+.+.|..+.+...++...+. -..++++|+|+++++++.+.. +.+.+....
T Consensus 177 vtvID~~t~~v~~qI~Vgg~---pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~------------ 241 (595)
T 1fwx_A 177 FTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEI------------ 241 (595)
T ss_dssp EEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHH------------
T ss_pred EEEEECCCCeEEEEEEeCCC---ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccce------------
Confidence 99999999999998876542 367889999999999987632 111111100
Q ss_pred ccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEE
Q 001319 674 EALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLL 753 (1101)
Q Consensus 674 ~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~ 753 (1101)
..+.++|+...
T Consensus 242 ---------------------------------------------------------------------~~~v~~Gk~~~ 252 (595)
T 1fwx_A 242 ---------------------------------------------------------------------EKAIAAGDYQE 252 (595)
T ss_dssp ---------------------------------------------------------------------HHHHHHTCSEE
T ss_pred ---------------------------------------------------------------------eEeccCCCeeE
Confidence 00122333222
Q ss_pred EeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEEEE
Q 001319 754 ALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFN 831 (1101)
Q Consensus 754 ~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd 831 (1101)
. +.|.+.|....+ +......+. -.....++.++|||+++++++ +++|.++|
T Consensus 253 i----~~V~VID~~~~~--------------------~~~~~~~Ip---vg~~PhGv~~sPDGk~v~V~~~~s~~VsVid 305 (595)
T 1fwx_A 253 L----NGVKVVDGRKEA--------------------SSLFTRYIP---IANNPHGCNMAPDKKHLCVAGKLSPTVTVLD 305 (595)
T ss_dssp E----TTEEEEECSGGG--------------------CCSSEEEEE---EESSCCCEEECTTSSEEEEECTTSSBEEEEE
T ss_pred E----CcEEEEeCcccC--------------------CceeEEEEe---cCCCceEEEEcCCCCEEEEeCCCCCeEEEEE
Confidence 2 235555543210 111000000 123456799999999988886 68899999
Q ss_pred CCCce------------EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec----------ceEEEeeccCCC
Q 001319 832 MMTFK------------VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV----------DEVKSKLKGHQK 889 (1101)
Q Consensus 832 ~~~~~------------~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~----------~~~~~~~~~h~~ 889 (1101)
+.+.+ ....+. -......++|++ +|...++.-.|++|.+||+.+ .+.+.++..|..
T Consensus 306 ~~~~~~~~~~~l~~~~~v~~~v~-vG~gP~h~aF~~-dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV~yq 383 (595)
T 1fwx_A 306 VTRFDAVFYENADPRSAVVAEPE-LGLGPLHTAFDG-RGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDVHYQ 383 (595)
T ss_dssp GGGHHHHHHSCCCGGGGEEECCB-CCSCEEEEEECT-TSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEECSSC
T ss_pred CcccccccccccCcccceEEEcC-CCCCcceEEECC-CCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeecccc
Confidence 98653 333333 345688899999 776566777899999999987 567777776654
Q ss_pred Ce-----eEEEEcCCCCEEEEEeC---CCc----------EEEEECCCCcccc
Q 001319 890 RI-----TGLAFSTSLNILVSSGA---DAQ----------LCVWSIDTWEKRK 924 (1101)
Q Consensus 890 ~V-----~~l~~s~d~~~l~s~s~---Dg~----------v~lwd~~~~~~~~ 924 (1101)
+- .++.++|||++|+++.. |+. -.++|+++++...
T Consensus 384 pGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~l 436 (595)
T 1fwx_A 384 PGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVL 436 (595)
T ss_dssp EEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEE
T ss_pred cccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEE
Confidence 32 33456899999998753 442 2889997666443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=99.09 E-value=6e-09 Score=114.21 Aligned_cols=218 Identities=13% Similarity=0.122 Sum_probs=140.9
Q ss_pred EEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEe
Q 001319 411 RVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF 490 (1101)
Q Consensus 411 ~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~ 490 (1101)
++.+..+|. |.+++.++.|..|| .+++.+.. ...+...+.++...++|. +..++.+ |..+|.+|+.+..+
T Consensus 24 ~~~~d~~g~-l~v~t~~~~l~~~d-~~g~~~~~---~~~~~~~~~~~~~~~~g~---l~v~t~~--l~~~d~~g~~~~~~ 93 (330)
T 3hxj_A 24 SPILAKNGT-IYLGSSNKNLYAIN-TDGSVKWF---FKSGEIIECRPSIGKDGT---IYFGSDK--VYAINPDGTEKWRF 93 (330)
T ss_dssp CCEECTTSC-EECSSTTTTTEEEC-TTSCEEES---SCGGGEEEECCEETTTTE---ECCSSCE--EEEECCCGGGGGGS
T ss_pred CceEccCCe-EEEEcCCCEEEEEC-CCCcEEEE---EecCCCcccceEEecCCc---EEEecCc--EEEECCCCcEEEEE
Confidence 344444554 55666788899999 87775432 223444567777777775 5555544 88888777665554
Q ss_pred ecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEe
Q 001319 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 491 ~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd 570 (1101)
...........+. + ..++.++.++.|..+|.. +............+.++...+++...+. +. ++.|..+|
T Consensus 94 ~~~~~~~~~~~~~---~-~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~l~vg-t~----~~~l~~~d 163 (330)
T 3hxj_A 94 DTKKAIVSDFTIF---E-DILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGTIYVG-SN----DNYLYAIN 163 (330)
T ss_dssp CC-----CCEEEE---T-TEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSCEEEE-CT----TSEEEEEC
T ss_pred ECCCCcccCceEE---C-CEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCEEEEE-cC----CCEEEEEC
Confidence 4333222223332 2 467788889999999988 6666666555556677788888875554 32 67899999
Q ss_pred CCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.. ++....+..... .+..+.+.+++. ++.++ +.|+.+| .+++......... ..+.++...++|. |.+++.+
T Consensus 164 ~~-g~~~~~~~~~~~-~~~~~~~d~~g~-l~v~t--~~l~~~d-~~g~~~~~~~~~~--~~~~~~~~~~~g~-l~v~t~~ 234 (330)
T 3hxj_A 164 PD-GTEKWRFKTNDA-ITSAASIGKDGT-IYFGS--DKVYAIN-PDGTEKWNFYAGY--WTVTRPAISEDGT-IYVTSLD 234 (330)
T ss_dssp TT-SCEEEEEECSSC-CCSCCEECTTCC-EEEES--SSEEEEC-TTSCEEEEECCSS--CCCSCCEECTTSC-EEEEETT
T ss_pred CC-CCEeEEEecCCC-ceeeeEEcCCCE-EEEEe--CEEEEEC-CCCcEEEEEccCC--cceeceEECCCCe-EEEEcCC
Confidence 98 877766654433 566667777765 44455 8899999 7777766665433 3577888887775 4456666
Q ss_pred CcEEEEE
Q 001319 651 NGFKILA 657 (1101)
Q Consensus 651 ~~i~iwd 657 (1101)
+.+..++
T Consensus 235 ~gl~~~~ 241 (330)
T 3hxj_A 235 GHLYAIN 241 (330)
T ss_dssp TEEEEEC
T ss_pred CeEEEEC
Confidence 6666665
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.08 E-value=8.6e-08 Score=104.10 Aligned_cols=189 Identities=14% Similarity=0.134 Sum_probs=128.0
Q ss_pred EEEecCCCCeEEEEc-C------CeEEEEECCCceEEEEeeCCCC---CeeEEEEecCCCCEEEEEe-------------
Q 001319 809 CIALSKNDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPP---ASTFLAFHPQDNNIIAIGT------------- 865 (1101)
Q Consensus 809 ~~~~s~dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~---~i~~l~~s~~~~~~la~g~------------- 865 (1101)
.+..+||| +++++. + |.|.++|.++++.+.++..... --..+.|+| +++.+++..
T Consensus 142 ~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p-~~~~mvsS~wg~p~~~~~g~~~ 219 (462)
T 2ece_A 142 TVHCGPDA-IYISALGNEEGEGPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNL-PNEVLVSSEWAVPNTIEDGLKL 219 (462)
T ss_dssp EEEECSSC-EEEEEEEETTSCSCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEET-TTTEEEECBCCCHHHHTTCCCT
T ss_pred ceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCCeEEEEEccCCCCccccceEEECC-CCCEEEEccCcCccccccccch
Confidence 35556666 444432 2 6799999999999998863222 234588899 888887774
Q ss_pred ------CCCcEEEEEeecceEEEeeccC-C-CCeeEEEE--cCCCCEEEEEe------CCCcEEEEECCCCccccceEEe
Q 001319 866 ------EDSTIHIYNVRVDEVKSKLKGH-Q-KRITGLAF--STSLNILVSSG------ADAQLCVWSIDTWEKRKSVTIH 929 (1101)
Q Consensus 866 ------~dg~v~iwd~~~~~~~~~~~~h-~-~~V~~l~~--s~d~~~l~s~s------~Dg~v~lwd~~~~~~~~~~~~~ 929 (1101)
.+.+|.+||+.+++.+.++..- . .....+.| +|+++++.+++ .+++|.+|..+.++......+.
T Consensus 220 ~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vId 299 (462)
T 2ece_A 220 EHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIE 299 (462)
T ss_dssp TTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEe
Confidence 3689999999999888877642 1 23455655 99999888776 4568888776654433222222
Q ss_pred ecCC----CC----------CCCcceEEEcCCCCEEEEEe--CCeEEEEEcC---CceeeeEeccCCC-----C------
Q 001319 930 IPAG----KT----------PTGDTRVQFNADQVRMLVVH--ETQLAIYDAS---KMERIRQWTPQDA-----L------ 979 (1101)
Q Consensus 930 ~~~~----~~----------~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~---~~~~~~~~~~~~~-----h------ 979 (1101)
.... .. ......+.+|+||++|.++. .+.|.+||+. +.+.+..+...-. |
T Consensus 300 i~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~ 379 (462)
T 2ece_A 300 IPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKL 379 (462)
T ss_dssp ECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCC
T ss_pred CCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccC
Confidence 1111 00 14578899999999999975 7899999986 3355555543200 0
Q ss_pred CCCEEEEEEccCCCEEEEEe
Q 001319 980 SAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 980 ~~~v~~v~~s~dg~~l~s~~ 999 (1101)
...-..+.+||||++|+++.
T Consensus 380 ~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 380 TGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp CSCCCCEEECTTSSEEEEEC
T ss_pred CCCCCEEEEcCCCCEEEEEc
Confidence 11357899999999999887
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=99.08 E-value=2.1e-05 Score=92.48 Aligned_cols=457 Identities=11% Similarity=-0.015 Sum_probs=237.2
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
..-..+.+++|++.+.+++.+-...+.|..++++...... .++...-.....+|+.+.++.|
T Consensus 37 ~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~------------------~v~~~~~~~P~GlAvD~~~~~l 98 (619)
T 3s94_A 37 GGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQ------------------NVVVSGLLSPDGLACDWLGEKL 98 (619)
T ss_dssp BCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CE------------------EEECSSCSCEEEEEEETTTTEE
T ss_pred cCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceE------------------EEEeCCCCCcCeEEEEecCCEE
Confidence 3455789999999877776665567788888887542110 0122223468899999976666
Q ss_pred EEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe-cCCceEEEEEcCCceeEEeec-CCcCeE
Q 001319 422 GVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFEG-HEAPVY 498 (1101)
Q Consensus 422 as~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~-h~~~v~ 498 (1101)
..+. ..+.|.+.++++..... .+...-.....|++.|.+.. ++++- +..+.|...+.+|.....+.. .-....
T Consensus 99 y~~d~~~~~I~v~~~dG~~~~~---l~~~~l~~P~~Iavdp~~g~-ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~ 174 (619)
T 3s94_A 99 YWTDSETNRIEVSNLDGSLRKV---LFWQELDQPRAIALDPSSGF-MYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPN 174 (619)
T ss_dssp EEEETTTTEEEEEETTSCSCEE---EECSSCSCCCCEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSSCSSEE
T ss_pred EEEeCCCCEEEEEECCCCCEEE---EEeCCCCCCceEEEecCCCe-EEEeccCCCCEEEEEECCCCceEEEEeCCCCCCc
Confidence 6554 56889999998653221 12234455778999998664 34443 334566666677766555532 334578
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.+++.+.. +.+.++-...+.|...+++................++++..+ .++.+-. +.+.|...|..+++...
T Consensus 175 Glald~~~-~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~--~ly~td~---~~~~V~~~d~~tg~~~~ 248 (619)
T 3s94_A 175 GLTLDYEE-QKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED--ILYWTDW---STHSILACNKYTGEGLR 248 (619)
T ss_dssp EEEEETTT-TEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS--EEEEECT---TTCSEEEEESSSCCCCE
T ss_pred EEEEEccC-CEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC--EEEEecC---CCCEEEEEECCCCcccE
Confidence 88887642 345555556678888888654443333222233456777655 4544432 36678888877665433
Q ss_pred EecccCCc------------------------ceEEEEE-----------eCCC--------------C-EEEEEeCCCc
Q 001319 579 TYAGFRKK------------------------SNGVVQF-----------DTTQ--------------N-HFLAVGEDSQ 608 (1101)
Q Consensus 579 ~~~~~~~~------------------------~v~~~~~-----------~~~~--------------~-~l~~~~~dg~ 608 (1101)
.+...... ....+|+ +|.| . +|+. +..+.
T Consensus 249 ~i~~~~~~p~~i~v~~~~~qp~~~n~C~~~ng~Cs~lCl~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~~Ll~-~~~~~ 327 (619)
T 3s94_A 249 EIHSDIFSPMDIHAFSQQRQPNATNPCGIDNGGCSHLCLMSPVKPFYQCACPTGVKLLENGKTCKDGATELLLL-ARRTD 327 (619)
T ss_dssp ECCSCCCCCSEEEECCGGGSCCCCCTTTTTGGGCSSEEEECSSTTSEEEECCTTCCBCTTSSCBCSSCSEEEEE-EESSC
T ss_pred EEecCCCCCcEEEEEccccCCCccccccCCCCcccceEECCCCCCCceEeCCchheecccCcccCCCCceEEEE-Ecccc
Confidence 32211000 0001111 1211 1 1222 22334
Q ss_pred EEEEECCCCeeeE-eeccCCCCCCCCeeEEecCCCEEEEEE-cCCcEEEEEccccccccccccCCCcccccCcceeeeee
Q 001319 609 IKFWDMDNVNILT-STDAEGGLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALK 686 (1101)
Q Consensus 609 i~iwd~~~~~~~~-~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 686 (1101)
|+..++....... .+.. .+...+.+++|++.+..|+.+. ..+.|+.++...... ..+.
T Consensus 328 i~~i~l~~~~~~~~~~~~-~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~~~--~~v~----------------- 387 (619)
T 3s94_A 328 LRRISLDTPDFTDIVLQL-EDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGSGS--QFVV----------------- 387 (619)
T ss_dssp EEEEESSSTTCCCEECCC-SCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSC--EEEE-----------------
T ss_pred eEEEecCCCccceeEEec-cccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCCcc--EEEE-----------------
Confidence 5555554432111 1111 1122456778887555555554 355666666543210 0000
Q ss_pred eccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEe-ecCCeEEEEE
Q 001319 687 VSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL-GSNGVQKLWK 765 (1101)
Q Consensus 687 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~~w~ 765 (1101)
........++++...+..|+.+ ...+.|.+.+
T Consensus 388 -----------------------------------------------~~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~ 420 (619)
T 3s94_A 388 -----------------------------------------------TAQIAHPDGIAVDWVARNLYWTDTGTDRIEVTR 420 (619)
T ss_dssp -----------------------------------------------CSSCSCCCEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred -----------------------------------------------ECCCCCcCceEEecccCcEEEEeCCCCcEEEEe
Confidence 0011233456666544434443 3456666665
Q ss_pred ecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEee
Q 001319 766 WHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 766 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~ 842 (1101)
++... ...... ..-.....+++.|....|..+. ..+|...+++.........
T Consensus 421 ~~G~~-----------------------~~~l~~--~~l~~P~~iavdp~~G~ly~tD~g~~~~I~r~~~dG~~~~~l~~ 475 (619)
T 3s94_A 421 LNGTM-----------------------RKILIS--EDLEEPRAIVLDPMVGYMYWTDWGEIPKIERAALDGSDRVVLVN 475 (619)
T ss_dssp TTSCS-----------------------CEEEEC--TTCCSEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEEC
T ss_pred CCCCe-----------------------EEEEEE--CCCCCeeeEEEEcCCCcEEEecCCCCCEEEEEccCCCccEEEEe
Confidence 43210 000000 1234578899999755554443 3567777775433333333
Q ss_pred CCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 843 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 843 ~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
..-.....+++++.++++.++=+..+.|..+++........+...-....+|++..+ ...++-...+.|...|..++
T Consensus 476 ~~l~~P~GlalD~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~l~~P~glav~~~-~ly~tD~~~~~I~~~~k~~g 552 (619)
T 3s94_A 476 TSLGWPNGLALDYDEGKIYWGDAKTDKIEVMNTDGTGRRVLVEDKIPHIFGFTLLGD-YVYWTDWQRRSIERVHKRSA 552 (619)
T ss_dssp SSCSCEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEEECCCCSSCCEEEETT-EEEEECTTSSCEEEEESSSC
T ss_pred CCCCCCeeeEEcccCCEEEEEECCCCEEEEEecCCCceEEEeccCCCCcEEEEEECC-EEEEeecCCCeEEEEEcCCC
Confidence 334567899999834444444445578888887644322222222233456666543 34444444566777777665
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=99.08 E-value=0.00018 Score=90.53 Aligned_cols=577 Identities=9% Similarity=0.023 Sum_probs=282.5
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC----CCEEEE
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD----GNYVGV 423 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd----g~~las 423 (1101)
.|+++-.+| ++..|+..|.=.+|.+..........+.+.| --..-++|..++.-.. ...|++
T Consensus 330 ssl~~l~~g--~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~------------~~~N~~PI~D~~v~d~~~~~~~~i~~ 395 (1158)
T 3ei3_A 330 ECLTYLDNG--VVFVGSRLGDSQLVKLNVDSNEQGSYVVAME------------TFTNLGPIVDMCVVDLERQGQGQLVT 395 (1158)
T ss_dssp SEEEECSTT--EEEEECSSSCEEEEEECSSCCTTSCCEEEEE------------EECCCCSEEEEEEECTTSSSCCEEEE
T ss_pred cEEEEECCC--EEEEEEecCCcEEEEEecCCCCccceEEeEe------------eecCcCCceeEEEEccCCCCCCeEEE
Confidence 455555566 4567888787777877653211000011100 1123457777776532 235555
Q ss_pred EE---CCCeEEEEeecCCcccccceeeecccCcEEEEEEec---CCCceEEEEecCCceEEEEEcCCceeEEee--cCCc
Q 001319 424 AF---TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY---PNKLLCVVTCGDDKLIKVWELSGRKLFNFE--GHEA 495 (1101)
Q Consensus 424 ~~---~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~---d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~--~h~~ 495 (1101)
++ .+|.+++..-.=+-.......+.+ ...++.+.... .+. +|+.+..+.+ .|+..++..+.... +-..
T Consensus 396 ~sG~g~~gsL~~lr~Gi~~~~~~~~~l~g-v~~iWtl~~~~~~~~~~--yLvlS~~~~T-~Vl~i~~e~veev~~~gf~~ 471 (1158)
T 3ei3_A 396 CSGAFKEGSLRIIRNGIGIHEHASIDLPG-IKGLWPLRSDPNRETDD--TLVLSFVGQT-RVLMLNGEEVEETELMGFVD 471 (1158)
T ss_dssp EECCGGGCEEEEEEESBCEEEEEEECCCS-CCEEEEECCCSSCSSCC--EEEEEETTEE-EEEEEETTEEEEECCTTCCS
T ss_pred EECcCCCCeEEEEecCCCEEEEEeecCCC-ccEEEEEeecCCCCCCC--EEEEECCCCe-EEEEEeCCcccccccccccC
Confidence 43 467888765432211111112332 24566665432 233 5666665666 45654444444432 1111
Q ss_pred CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC-CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 496 PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG-HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 496 ~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~-~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
....++...-+++ .++=.. ...|++.+.........+..+. ..|...+.+. .+++.+. .+.+.++++..+
T Consensus 472 ~~~TL~~~~l~~~-~ivQVt-~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n~--~~vvva~-----g~~l~~fel~~~ 542 (1158)
T 3ei3_A 472 DQQTFFCGNVAHQ-QLIQIT-SASVRLVSQEPKALVSEWKEPQAKNISVASCNS--SQVVVAV-----GRALYYLQIHPQ 542 (1158)
T ss_dssp SSCEEEEEEETTT-EEEEEE-SSCEEEEESSSCCEEEEECCTTCCCCCEEEECS--SEEEEEE-----TTEEEEEEEETT
T ss_pred CCCcEEEEEcCCC-eEEEEe-cCEEEEEECCCCeEEEEEECCCCCEEEEEEeCC--CEEEEEE-----CCEEEEEEeeCC
Confidence 1111111111111 222222 2346666655444444444333 3566665543 4555553 356777777665
Q ss_pred eeEEEecccCCcceEEEEEeCC------CCEEEEEeC-CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec--CCCEEE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTT------QNHFLAVGE-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK--EGNLLA 645 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~------~~~l~~~~~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~--~g~~l~ 645 (1101)
++.......-...+.++++.+. ++++++|.. |++++|+++.+.+.+........ ....++.+.. ...+|.
T Consensus 543 ~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~-~~p~si~l~~~~~~~~L~ 621 (1158)
T 3ei3_A 543 ELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFELLHKEMLGGE-IIPRSILMTTFESSHYLL 621 (1158)
T ss_dssp EEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCCEEEEEECCSS-CCEEEEEEEEETTEEEEE
T ss_pred ceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCCeEEEEECCCC-CCCcEEEEEEeCCCcEEE
Confidence 4333222222336888888763 368888885 99999999998776655443221 1223343332 345788
Q ss_pred EEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCe
Q 001319 646 VTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQC 725 (1101)
Q Consensus 646 ~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 725 (1101)
+|-.||.+..+.+......+...+ .......++.-..+...+...+...+... .+-+...+..
T Consensus 622 igl~dG~l~~~~~d~~tg~l~d~r--~~~LG~~pv~L~~~~~~~~~~V~a~s~rp---------------~liy~~~~~l 684 (1158)
T 3ei3_A 622 CALGDGALFYFGLNIETGLLSDRK--KVTLGTQPTVLRTFRSLSTTNVFACSDRP---------------TVIYSSNHKL 684 (1158)
T ss_dssp EEETTSEEEEEEECTTTCCEEEEE--EEECCSSCCEEEEEESSSCEEEEEESSSC---------------EEEEESSSSE
T ss_pred EEeCCCeEEEEEEcCCCCccccce--eEEcCCCceEEEEEeeCCceeEEEECCCC---------------EEEEEcCCce
Confidence 899999887665542110000000 00000123333333333322222211111 1111222222
Q ss_pred EEEEcCCCCCCcccEE-EEEeecCc--ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCC
Q 001319 726 RLVTMPESTDTSSKVV-RLLYTNSA--VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 802 (1101)
Q Consensus 726 ~~~~~~~~~~~~~~i~-~~~~s~~~--~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1101)
....+.. ..+. ...|+... ..++..+ ++.+++..++.... |. ...++
T Consensus 685 ~~s~l~~-----~~v~~~~~F~se~~~~g~v~~~-~~~LrI~~i~~~~~--------------~~-------~~~ip--- 734 (1158)
T 3ei3_A 685 VFSNVNL-----KEVNYMCPLNSDGYPDSLALAN-NSTLTIGTIDEIQK--------------LH-------IRTVP--- 734 (1158)
T ss_dssp EEEEBSS-----SCCCEEEEECCSSSTTEEEEEC-SSCEEEEEECCSSS--------------EE-------EEEEE---
T ss_pred EEeccCh-----HHhceEeccCcccCCCcEEEEc-CCceEEEEecccCC--------------ee-------EEEEe---
Confidence 2221111 1121 12232211 2244333 44588776642210 00 00000
Q ss_pred CCCCEeEEEecCCCCeEEEEc--------------------------------------------------CCeEEEEEC
Q 001319 803 LEEAVPCIALSKNDSYVMSAT--------------------------------------------------GGKISLFNM 832 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~--------------------------------------------------dg~i~vwd~ 832 (1101)
-...+..++++|+.+.++.+. .+.|++.|.
T Consensus 735 L~~Tprri~y~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp 814 (1158)
T 3ei3_A 735 LYESPRKICYQEVSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQ 814 (1158)
T ss_dssp CSSEEEEEEEEGGGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEET
T ss_pred CCCCceEEEEcCCCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeC
Confidence 122334444444333222110 134788888
Q ss_pred CCceEEEEeeCCCC-CeeEEE---EecCCCCEEEEEe----------CCCcEEEEEeecceEEEee-ccCCCCeeEEEEc
Q 001319 833 MTFKVMTTFMSPPP-ASTFLA---FHPQDNNIIAIGT----------EDSTIHIYNVRVDEVKSKL-KGHQKRITGLAFS 897 (1101)
Q Consensus 833 ~~~~~~~~~~~~~~-~i~~l~---~s~~~~~~la~g~----------~dg~v~iwd~~~~~~~~~~-~~h~~~V~~l~~s 897 (1101)
.+++.+..+.-... .+.+++ |..+...++++|+ ..|.|++|++..+++.... ....++|++++--
T Consensus 815 ~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~~~v~g~v~al~~~ 894 (1158)
T 3ei3_A 815 HTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAEKEVKGAVYSMVEF 894 (1158)
T ss_dssp TTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEEEEESSCEEEEEEE
T ss_pred CCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEEEEcCCcCEEEeee
Confidence 88888776654333 345554 4332357899887 3488999999866443222 2346789888754
Q ss_pred CCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEE--EEcCCceeeeEec
Q 001319 898 TSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAI--YDASKMERIRQWT 974 (1101)
Q Consensus 898 ~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v--~d~~~~~~~~~~~ 974 (1101)
+|+.|+.. ...|++|++...+.+. ...... ..+..+.....+.++++|+ -..+.+ |+....+....-.
T Consensus 895 -~g~Lla~i--g~~l~vy~l~~~~~L~-~~~~~~-----~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~ 965 (1158)
T 3ei3_A 895 -NGKLLASI--NSTVRLYEWTTEKELR-TECNHY-----NNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR 965 (1158)
T ss_dssp -TTEEEEEE--TTEEEEEEECTTSCEE-EEEEEC-----CCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE
T ss_pred -CCEEEEEc--CCEEEEEECCCCceEE-EEeecc-----ccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe
Confidence 35444433 4789999998754332 111111 1233334444677888887 445554 4554444433322
Q ss_pred cCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 975 PQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 975 ~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
+.+...++++.|-.++ .++.+..+|.|.+.....
T Consensus 966 --D~~~~~vta~~~ld~~-t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 --DFNPNWMSAVEILDDD-NFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp --CCSCBCEEEEEEEETT-EEEEEETTSEEEEEEECT
T ss_pred --ecccccEEEEEEEccC-cEEEEcCCCcEEEEecCC
Confidence 2337889999998665 677799999999987765
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=99.03 E-value=5.4e-08 Score=105.63 Aligned_cols=238 Identities=15% Similarity=0.136 Sum_probs=151.8
Q ss_pred EEe--cCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccC-CccEEEEEEccCCCEEEEEECC
Q 001319 351 DFH--PSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 351 ~fs--pdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~v~~~~~spdg~~las~~~d 427 (1101)
+++ +++++|++.|..++.|.|+|+.+..... +-.+..+ +..+.... ...-..+..+||| .++++..+
T Consensus 88 ~~~~~~~r~~l~v~~l~s~~I~viD~~t~p~~p-~~~k~ie--------~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~ 157 (462)
T 2ece_A 88 NGKPNIERRFLIVPGLRSSRIYIIDTKPNPREP-KIIKVIE--------PEEVKKVSGYSRLHTVHCGPDA-IYISALGN 157 (462)
T ss_dssp TCCTTCCSCEEEEEBTTTCCEEEEECCSCTTSC-EEEEEEC--------HHHHHHHHCEEEEEEEEECSSC-EEEEEEEE
T ss_pred ccCCCccCCEEEEccCCCCeEEEEECCCCCCCc-eeeeeec--------hhhcccccCCCcccceeECCCe-EEEEcCCC
Confidence 347 8899999999999999999987541100 0001100 00001111 1245677889999 66665544
Q ss_pred ------CeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEec-------------------CCceEEEEE
Q 001319 428 ------HLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG-------------------DDKLIKVWE 481 (1101)
Q Consensus 428 ------~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~-------------------~d~~v~iwd 481 (1101)
+.|.+.|.++++.+..... .+.. .--..+.|+|+++ .+++.. .+.+|.+||
T Consensus 158 ~~g~~~g~v~vlD~~T~~v~~~~~~-~~~~~~~~Yd~~~~p~~~--~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D 234 (462)
T 2ece_A 158 EEGEGPGGILMLDHYSFEPLGKWEI-DRGDQYLAYDFWWNLPNE--VLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWD 234 (462)
T ss_dssp TTSCSCCEEEEECTTTCCEEEECCS-BCTTCCCCCCEEEETTTT--EEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEE
T ss_pred cCCCCCCeEEEEECCCCeEEEEEcc-CCCCccccceEEECCCCC--EEEEccCcCccccccccchhhhhhccCCEEEEEE
Confidence 7899999999887764321 1222 2234688899999 677764 478999999
Q ss_pred -cCCceeEEeecC-C-cCeEEEecccCCCccEEEEec------cCCeEEEEecCCCCee--ee--ccC-------C----
Q 001319 482 -LSGRKLFNFEGH-E-APVYSICPHHKENIQFIFSTA------IDGKIKAWLYDTMGSR--VD--YDA-------P---- 537 (1101)
Q Consensus 482 -~~~~~~~~~~~h-~-~~v~~v~~~~~~~~~~l~s~~------~d~~i~~wd~~~~~~~--~~--~~~-------~---- 537 (1101)
.+++.+.++.-. . .....+.|.+++++++++.++ .+++|.+|..+.+... .. +.. .
T Consensus 235 ~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~ 314 (462)
T 2ece_A 235 LRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILK 314 (462)
T ss_dssp TTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGG
T ss_pred CCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCcccccccccccc
Confidence 777777777642 1 234556664455777877766 4568877766542211 00 000 0
Q ss_pred -----CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC---CeeEEEecccCC---------c----ceEEEEEeCC
Q 001319 538 -----GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE---GTIKRTYAGFRK---------K----SNGVVQFDTT 596 (1101)
Q Consensus 538 -----~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~---~~~~~~~~~~~~---------~----~v~~~~~~~~ 596 (1101)
......+.+|+||++|.++.. +.+.|.++|+.. .+.+..+..... . ....++++||
T Consensus 315 ~f~~~~~~pa~I~lS~DGrfLYVSnr---g~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpD 391 (462)
T 2ece_A 315 PFKAVPPLVTDIDISLDDKFLYLSLW---GIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRD 391 (462)
T ss_dssp GGTEECCCCCCEEECTTSCEEEEEET---TTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTT
T ss_pred ccccCCCceeEEEECCCCCEEEEEeC---CCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCC
Confidence 234678999999999998876 578999999852 355555443210 0 2456899999
Q ss_pred CCEEEEEe
Q 001319 597 QNHFLAVG 604 (1101)
Q Consensus 597 ~~~l~~~~ 604 (1101)
|++|+++.
T Consensus 392 Gk~LyVaN 399 (462)
T 2ece_A 392 GRRVYVTN 399 (462)
T ss_dssp SSEEEEEC
T ss_pred CCEEEEEc
Confidence 99999886
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=99.03 E-value=0.00014 Score=85.61 Aligned_cols=460 Identities=10% Similarity=-0.008 Sum_probs=246.0
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
-..+.+++|++.+..++.+-..++.|..++++...... ++.........+|+.+.++.|..
T Consensus 36 ~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~-------------------v~~~g~~~P~GlAvD~~~~~LY~ 96 (628)
T 4a0p_A 36 VKEASALDFDVTDNRIYWTDISLKTISRAFMNGSALEH-------------------VVEFGLDYPEGMAVDWLGKNLYW 96 (628)
T ss_dssp CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE-------------------EECSSCSCCCEEEEETTTTEEEE
T ss_pred CCceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEE-------------------EEeCCCCCcceEEEEeCCCEEEE
Confidence 35789999999877777777778899999887543221 11112235678999887666655
Q ss_pred EE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe-cCCceEEEEEcCCceeEEeecCCcCeEEEe
Q 001319 424 AF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 424 ~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~ 501 (1101)
+. ..+.|.+.++++... .. .+...-.....+++.|.... ++++- +..+.|...+.+|.....+...-.....++
T Consensus 97 tD~~~~~I~v~~~dG~~~-~~--l~~~~l~~P~~iavdp~~G~-lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~Gla 172 (628)
T 4a0p_A 97 ADTGTNRIEVSKLDGQHR-QV--LVWKDLDSPRALALDPAEGF-MYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLT 172 (628)
T ss_dssp EETTTTEEEEEETTSTTC-EE--EECSSCCCEEEEEEETTTTE-EEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEE
T ss_pred EECCCCEEEEEecCCCcE-EE--EEeCCCCCcccEEEccCCCe-EEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEE
Confidence 54 467899999876532 21 12233455789999996654 34443 335677777777776665554455678898
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
+.+.. +.+.++-...+.|...+++...... +.........+++.. + .++..-. ..+.|...|..+++....+.
T Consensus 173 lD~~~-~~LY~aD~~~~~I~~~d~dG~~~~v-~~~~l~~P~glav~~-~-~ly~tD~---~~~~I~~~dk~tg~~~~~l~ 245 (628)
T 4a0p_A 173 IDYAK-RRLYWTDLDTNLIESSNMLGLNREV-IADDLPHPFGLTQYQ-D-YIYWTDW---SRRSIERANKTSGQNRTIIQ 245 (628)
T ss_dssp EETTT-TEEEEEETTTTEEEEEETTSCSCEE-EEECCSCEEEEEEET-T-EEEEEET---TTTEEEEEETTTCCSCEEEE
T ss_pred Ecccc-CEEEEEECCCCEEEEEcCCCCceEE-eeccCCCceEEEEEC-C-EEEEecC---CCCEEEEEECCCCCceEEEe
Confidence 87642 3444555667889999987654432 222333456777754 3 4444322 36678888876665333332
Q ss_pred ccCC-----------------------cceEEEEEe----------CCCC--------------EEEEEeCCCcEEEEEC
Q 001319 582 GFRK-----------------------KSNGVVQFD----------TTQN--------------HFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 582 ~~~~-----------------------~~v~~~~~~----------~~~~--------------~l~~~~~dg~i~iwd~ 614 (1101)
.... .....+|+. |.|- +++.+ ....|+-..+
T Consensus 246 ~~~~~p~~i~v~~~~~q~~~n~C~~~ng~C~~~C~~~~~~~~~C~C~~g~~l~~d~~~C~~~~~~Ll~s-~~~~i~~i~l 324 (628)
T 4a0p_A 246 GHLDYVMDILVFHSSRQSGWNECASSNGHCSHLCLAVPVGGFVCGCPAHYSLNADNRTCSAPTTFLLFS-QKSAINRMVI 324 (628)
T ss_dssp CSCCSCCEEEEECGGGSCCCCTTTTTGGGCSSEEEEETTTEEEEECSTTCEECTTSSCEECCSSEEEEE-ETTEEEEECC
T ss_pred cCCCCcceeeeeeecccccceEeccCCCCcchhhhcCCCCCeeEEcCCCcEecccCCcCccccceeeee-ccceEEEEec
Confidence 1100 001112221 1111 11111 1122222222
Q ss_pred CCCee-eEeeccCCCCCCCCeeEEecCCCEEEEEEc-CCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccc
Q 001319 615 DNVNI-LTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1101)
Q Consensus 615 ~~~~~-~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 692 (1101)
..... ...+.. .....+..++|.+....|+.+.. .+.|+.++..... ....+...
T Consensus 325 ~~~~~~~~~l~~-~~~~~~~~ld~d~~~~~iy~sD~~~~~I~r~~~~g~~-~~~v~~~~--------------------- 381 (628)
T 4a0p_A 325 DEQQSPDIILPI-HSLRNVRAIDYDPLDKQLYWIDSRQNMIRKAQEDGSQ-GFTVVVSS--------------------- 381 (628)
T ss_dssp CTTCCCCEECCC-TTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCS-CEEEEC-----------------------
T ss_pred ccccCceEEEEe-hhcCCceEEEEecCCCeEEEEecCcceEEEEEcCCCC-ceEEEEcc---------------------
Confidence 21110 001111 11234567778776656655543 4555555543220 00000000
Q ss_pred cccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEe-ecCCeEEEEEecCCCC
Q 001319 693 VSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLAL-GSNGVQKLWKWHRNEQ 771 (1101)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~-~~dg~v~~w~~~~~~~ 771 (1101)
.........+..+++...++.|+.+ +..+.|.+.+++.
T Consensus 382 --------------------------------------~~~~~~~~~p~glAvD~~~~nLY~td~~~~~I~v~~~~G--- 420 (628)
T 4a0p_A 382 --------------------------------------VPSQNLEIQPYDLSIDIYSRYIYWTCEATNVINVTRLDG--- 420 (628)
T ss_dssp --------------------------------------------CCCEEEEEEETTTTEEEEEETTTTEEEEEETTS---
T ss_pred --------------------------------------cccccccCCcceEEeeccCCeEEEEcCCCCEEEEEECCC---
Confidence 0000012345677887776655544 3456666665431
Q ss_pred CCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCC-CCeEEEEc-CC--eEEEEECCCceEEEEeeCCCCC
Q 001319 772 NPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKN-DSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPPA 847 (1101)
Q Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-g~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~ 847 (1101)
........ ........+++.|. |.++.+-. .. +|...+++...........-..
T Consensus 421 --------------------~~~~~l~~--~~l~~Pr~iavdp~~g~ly~tD~g~~~~~I~r~~~dG~~~~~l~~~~l~~ 478 (628)
T 4a0p_A 421 --------------------RSVGVVLK--GEQDRPRAVVVNPEKGYMYFTNLQERSPKIERAALDGTEREVLFFSGLSK 478 (628)
T ss_dssp --------------------CEEEEEEE--CTTCCEEEEEEETTTTEEEEEEEETTEEEEEEEETTSCSCEEEECSSCSC
T ss_pred --------------------CeEEEEEe--CCCCceeeEEEecCCCeEEEeecCCCCCeEEEEeCCCCCcEEEEeccCCC
Confidence 11111011 12345789999994 54444433 32 6777777644333333333456
Q ss_pred eeEEEEecCCCCEEEEE-eCCCcEEEEEeecceEEEeec-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc
Q 001319 848 STFLAFHPQDNNIIAIG-TEDSTIHIYNVRVDEVKSKLK-GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 923 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g-~~dg~v~iwd~~~~~~~~~~~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~ 923 (1101)
...+++.+ .+..|..+ +..+.|..+++... ....+. .......+|++.. +...++-...+.|...|..+|+..
T Consensus 479 P~gla~D~-~~~~LYw~D~~~~~I~~~~~dG~-~r~~~~~~~~~~P~glav~~-~~ly~tD~~~~~i~~~~k~~G~~~ 553 (628)
T 4a0p_A 479 PIALALDS-RLGKLFWADSDLRRIESSDLSGA-NRIVLEDSNILQPVGLTVFE-NWLYWIDKQQQMIEKIDMTGREGR 553 (628)
T ss_dssp EEEEEEET-TTTEEEEEETTTTEEEEEETTSC-SCEEEECSSCSCEEEEEEET-TEEEEEETTTTEEEEEETTSSSCC
T ss_pred ccEEEEeC-CCCEEEEEeCCCCEEEEEeCCCC-ceEEEEcCCCCCcEEEEEEC-CEEEEEECCCCeEEEEECcCCCCc
Confidence 78999999 55455444 45678999988543 333332 3344567888764 455555555677888887776643
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=99.00 E-value=1.7e-08 Score=113.74 Aligned_cols=237 Identities=7% Similarity=0.030 Sum_probs=164.9
Q ss_pred CCCeEEEEc--CCeEEEEECCCceEEEEeeCC-CCCeeEEEE-e-cCCCCEEEEEe------------------CCCcEE
Q 001319 815 NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAF-H-PQDNNIIAIGT------------------EDSTIH 871 (1101)
Q Consensus 815 dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~-s-~~~~~~la~g~------------------~dg~v~ 871 (1101)
||+++.+.. ++.|.+.|+.+.++...+.-. ...+..+++ + | +++++++++ .++.+.
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p-~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vt 178 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWP-RSNYVFCNGEDETPLVNDGTNMEDVANYVNVFT 178 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSS-BCSEEEEEECSCEESSCSSSSTTCGGGEEEEEE
T ss_pred CCCEEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecC-CCcEEEEecccccccCCCCcccccccccCceEE
Confidence 888888776 567999999999988855433 245888888 5 7 888888774 345799
Q ss_pred EEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC--------------------------------------cEE
Q 001319 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA--------------------------------------QLC 913 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg--------------------------------------~v~ 913 (1101)
+.|..+.+...++.--. ....++++|||+++++.+.+. .|.
T Consensus 179 vID~~t~~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~ 257 (595)
T 1fwx_A 179 AVDADKWEVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVK 257 (595)
T ss_dssp EEETTTTEEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEE
T ss_pred EEECCCCeEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEE
Confidence 99999998888776322 457788999999999888553 477
Q ss_pred EEECCC--Ccc-ccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCce------------eeeEeccC
Q 001319 914 VWSIDT--WEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME------------RIRQWTPQ 976 (1101)
Q Consensus 914 lwd~~~--~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~------------~~~~~~~~ 976 (1101)
+.|..+ ++. ....... .....+.++|||+++++++ +.+|.++|+.+.+ .+.....
T Consensus 258 VID~~~~~~~~~~~~Ipvg-------~~PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~v- 329 (595)
T 1fwx_A 258 VVDGRKEASSLFTRYIPIA-------NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPEL- 329 (595)
T ss_dssp EEECSGGGCCSSEEEEEEE-------SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBC-
T ss_pred EEeCcccCCceeEEEEecC-------CCceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCC-
Confidence 777776 332 2222222 3566799999999999975 7899999999763 3344433
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC----------CceeEeeCCCCcCCCcccCCCCccceEEEEEecCC
Q 001319 977 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT----------LRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLE 1046 (1101)
Q Consensus 977 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~----------~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d 1046 (1101)
......++|++||...++..-|+.|.+||+++ ...+.++.. .+.+ +|.+ ...++..+| |
T Consensus 330 ---G~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kidV-~yqp----Gh~~--~~~g~t~~~-D 398 (595)
T 1fwx_A 330 ---GLGPLHTAFDGRGNAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLDV-HYQP----GHLK--TVMGETLDA-T 398 (595)
T ss_dssp ---CSCEEEEEECTTSEEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEEC-SSCE----EEEE--ETTTTSTTC-C
T ss_pred ---CCCcceEEECCCCeEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEeec-cccc----ccce--eccceEeCC-C
Confidence 56789999999994344567899999999987 445555542 1110 1111 111234567 7
Q ss_pred CCEEEEEECC--CeE-----------EEEeCCCCCCccc
Q 001319 1047 PNQFAIGLTD--GSV-----------KVMEPSESEGKWG 1072 (1101)
Q Consensus 1047 ~~~l~s~~~D--g~v-----------~iWd~~~~~~~~~ 1072 (1101)
+.+|+++..- .++ .++|+++++.++-
T Consensus 399 Gk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~m~lv 437 (595)
T 1fwx_A 399 NDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDKMVLV 437 (595)
T ss_dssp SSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSSCEEE
T ss_pred CCEEEEcCCCCccccccCCCCCCCcceEEEcCCCcEEEE
Confidence 8888887542 223 8899977774433
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.97 E-value=5.2e-10 Score=123.99 Aligned_cols=189 Identities=7% Similarity=-0.043 Sum_probs=113.1
Q ss_pred CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCc
Q 001319 417 DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEA 495 (1101)
Q Consensus 417 dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~ 495 (1101)
++..|++++.|+.|+.||..+|+.+.. +.. +.+.+..+..++. ++++++.|+.|+.|| .+|+.+..+..+..
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~---~~~--~~~~s~p~~~~g~--~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~ 80 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWT---LKE--DPVLQVPTHVEEP--AFLPDPNDGSLYTLGSKNNEGLTKLPFTIP 80 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEE---EEC--CCSCCCC-----C--CEEECTTTCCEEEC-----CCSEECSCCHH
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEE---ecC--CCceecceEcCCC--EEEEeCCCCEEEEEECCCCceeeeeeccCc
Confidence 678999999999999999999987653 333 4555666667777 677888999999999 78988777654422
Q ss_pred CeEEEecccCC-CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 496 PVYSICPHHKE-NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 496 ~v~~v~~~~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
... ..+|.- ++..+++++.|+.|+.||..+++....+..+. ...++|++..+++++. ++.|+.||..+|
T Consensus 81 ~~~--~~sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~----~~~~~p~~~~v~~~~~----dg~v~a~d~~tG 150 (369)
T 2hz6_A 81 ELV--QASPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAF----ADSLSPSTSLLYLGRT----EYTITMYDTKTR 150 (369)
T ss_dssp HHH--TTCSCC-----CCCCEEEEEEEEECCC--------------------------EEEEEE----EEEEECCCSSSS
T ss_pred ccc--ccCceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCC----cccccccCCEEEEEec----CCEEEEEECCCC
Confidence 111 111111 23578888999999999999998887766543 2345678888888875 789999999999
Q ss_pred eeEEEecccCCcceEEEEEeCCC---CEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
+.+..+.... ....++..+. ..+++++.||.|+.||..+|+.+.....
T Consensus 151 ~~~W~~~~~~---~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~ 201 (369)
T 2hz6_A 151 ELRWNATYFD---YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQNY 201 (369)
T ss_dssp SCCCEEEEEE---ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEEC
T ss_pred CEEEeEeccc---ccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEecC
Confidence 8766554221 1122333332 5678889999999999999998887764
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=2.4e-06 Score=89.87 Aligned_cols=222 Identities=12% Similarity=0.029 Sum_probs=145.9
Q ss_pred ccEEEEEEccCCCEEEEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
..+..++|+|+++.|..+. .++.|.+++..++.... .+.........+++++++.. ++++....+.|.+++.++.
T Consensus 36 ~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~---~~~~~~~~p~~ia~d~~~~~-lyv~d~~~~~I~~~~~~g~ 111 (267)
T 1npe_A 36 KVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGT 111 (267)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSC
T ss_pred CcEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEE---EEECCCCCccEEEEEecCCe-EEEEECCCCEEEEEEcCCC
Confidence 4678999999877666655 46789999998754321 12222346789999998764 5566666789999996665
Q ss_pred eeEEeec-CCcCeEEEecccCCCccEEEEecc---CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 486 ~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
....+.. .......+++.+. +..|+.+.. .+.|..++++.................+++++++..|..+..
T Consensus 112 ~~~~~~~~~~~~P~~i~vd~~--~g~lyv~~~~~~~~~I~~~~~dg~~~~~~~~~~~~~P~gia~d~~~~~lyv~d~--- 186 (267)
T 1npe_A 112 QRRVLFDTGLVNPRGIVTDPV--RGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA--- 186 (267)
T ss_dssp SCEEEECSSCSSEEEEEEETT--TTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---
T ss_pred CEEEEEECCCCCccEEEEeeC--CCEEEEEECCCCCcEEEEEecCCCCcEEEEECCCCCCcEEEEcCCCCEEEEEEC---
Confidence 4443332 2245688888763 234444433 468888887654433222233346789999999888776654
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
+.+.|..+|.........+.+.. ....++.. +..++.+. ..+.|.++|..+++.+..+.... ......+++.|+
T Consensus 187 ~~~~I~~~~~~g~~~~~~~~~~~--~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~~g~-~~~p~gi~~~~~ 261 (267)
T 1npe_A 187 GTHRAECLNPAQPGRRKVLEGLQ--YPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHK-QTRLYGITIALS 261 (267)
T ss_dssp TTTEEEEEETTEEEEEEEEECCC--SEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSS-CCCCCCEEEECS
T ss_pred CCCEEEEEecCCCceEEEecCCC--CceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEcccc-ccccceeeecCc
Confidence 46789999998655444443322 23445554 45666655 66899999999999888876432 223578888887
Q ss_pred CC
Q 001319 641 GN 642 (1101)
Q Consensus 641 g~ 642 (1101)
+.
T Consensus 262 ~~ 263 (267)
T 1npe_A 262 QC 263 (267)
T ss_dssp CC
T ss_pred cC
Confidence 64
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.91 E-value=2.8e-07 Score=110.36 Aligned_cols=192 Identities=15% Similarity=0.166 Sum_probs=130.2
Q ss_pred CCeEEEEECCCceEEEEeeCCC-------------------------------CCeeEEEEecCCCCEEEEEeCCC----
Q 001319 824 GGKISLFNMMTFKVMTTFMSPP-------------------------------PASTFLAFHPQDNNIIAIGTEDS---- 868 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~-------------------------------~~i~~l~~s~~~~~~la~g~~dg---- 868 (1101)
+|.|..+|..+|+.+..+.... .....+++.+ +..++++++.++
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~-~~~~vy~~~~~g~~w~ 255 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDP-ELDLLYVGTGNGSPWN 255 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEET-TTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcC-CCCEEEEeCCCCCccc
Confidence 4678888888888877765311 0112478888 677888887776
Q ss_pred ---------------cEEEEEeecceEEEeecc--CC-------CCeeEEEEcCCCC---EEEEEeCCCcEEEEECCCCc
Q 001319 869 ---------------TIHIYNVRVDEVKSKLKG--HQ-------KRITGLAFSTSLN---ILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 869 ---------------~v~iwd~~~~~~~~~~~~--h~-------~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
.|..+|..+|+.+..++. |. .++....+..+|+ .++.++.+|.++++|..+|+
T Consensus 256 ~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 256 REVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 399999999999877653 32 2333333334665 68899999999999999998
Q ss_pred cccceEEee---------cCCC--------------------C-CCCcceEEEcCCCCEEEEE-----------------
Q 001319 922 KRKSVTIHI---------PAGK--------------------T-PTGDTRVQFNADQVRMLVV----------------- 954 (1101)
Q Consensus 922 ~~~~~~~~~---------~~~~--------------------~-~~~v~~~~~s~d~~~l~~~----------------- 954 (1101)
.+....... ..+. . ...-..++++|+...+.+.
T Consensus 336 ~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~ 415 (668)
T 1kv9_A 336 LISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVT 415 (668)
T ss_dssp EEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCC
T ss_pred EeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEeeeecccccc
Confidence 763221100 0000 0 0011237888887776641
Q ss_pred --------------------eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 955 --------------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 955 --------------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
.++.|..||..+++.+-..... .+.....+...|.++++++.||.+++||.++|+.
T Consensus 416 ~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~ 491 (668)
T 1kv9_A 416 RKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYP----THWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEA 491 (668)
T ss_dssp CSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEES----SSCCCCEEEETTTEEEEECTTSEEEEEETTTCCE
T ss_pred ccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCC----CCCcCceeEeCCCEEEEECCcccchhhhhhcChh
Confidence 1277999999999988776653 2233334455788999999999999999999999
Q ss_pred eEeeCC
Q 001319 1015 RCYIAP 1020 (1101)
Q Consensus 1015 ~~~~~~ 1020 (1101)
+.++..
T Consensus 492 l~~~~~ 497 (668)
T 1kv9_A 492 LWQFEA 497 (668)
T ss_dssp EEEEEC
T ss_pred heEecC
Confidence 988874
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.90 E-value=4.3e-10 Score=124.64 Aligned_cols=186 Identities=14% Similarity=0.086 Sum_probs=109.9
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC-ee
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-IT 892 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-V~ 892 (1101)
++..+++++ ||.|+.||..+|+.+..+.. ..+.+..+.. ++.++++++.||.|+.||..+|+.+..+..+... +.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~--~~~~s~p~~~-~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~ 84 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE--DPVLQVPTHV-EEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQ 84 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTCCEEEEEEC--CCSCCCC------CCEEECTTTCCEEEC-----CCSEECSCCHHHHHT
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEecC--CCceecceEc-CCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccc
Confidence 456666666 89999999999999998886 4565555666 6777888889999999999999877666543211 11
Q ss_pred -EEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEE-EeCCeEEEEEcCCceee
Q 001319 893 -GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLV-VHETQLAIYDASKMERI 970 (1101)
Q Consensus 893 -~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~-~~d~~i~v~d~~~~~~~ 970 (1101)
...+. ++..+++++.|+.|+.||..+|+.+...... . ...++|++..+++ +.++.|..||..+|+.+
T Consensus 85 ~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~-------~---~~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~ 153 (369)
T 2hz6_A 85 ASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSA-------F---ADSLSPSTSLLYLGRTEYTITMYDTKTRELR 153 (369)
T ss_dssp TCSCC------CCCCEEEEEEEEECCC--------------------------------EEEEEEEEEEECCCSSSSSCC
T ss_pred cCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCC-------C---cccccccCCEEEEEecCCEEEEEECCCCCEE
Confidence 11111 3457788889999999999999875443321 1 1345567777776 45899999999999877
Q ss_pred eEeccCCCCCCCEEEEEEccCC---CEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 971 RQWTPQDALSAPISCAVYSCNS---QLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg---~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
..+... .....+++.+. ..+++++.||.|+.||..+|+.+-...
T Consensus 154 W~~~~~-----~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~ 200 (369)
T 2hz6_A 154 WNATYF-----DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN 200 (369)
T ss_dssp CEEEEE-----EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE
T ss_pred EeEecc-----cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEec
Confidence 665432 12233344432 567788899999999999999876654
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=2.6e-06 Score=99.31 Aligned_cols=191 Identities=14% Similarity=0.131 Sum_probs=122.6
Q ss_pred CCeEEEEECCCceEEEEeeCCCCC-------------------------------------e-eEEEEecCCCCEEEEEe
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPA-------------------------------------S-TFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~-------------------------------------i-~~l~~s~~~~~~la~g~ 865 (1101)
+|.|+.+|..+|+.+..+...... + ..+++.+ ...++..++
T Consensus 181 ~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~-~~g~vy~g~ 259 (599)
T 1w6s_A 181 RGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDP-GTNLIYFGT 259 (599)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeC-CCCEEEEeC
Confidence 577888888888888776542211 0 1356667 556777776
Q ss_pred CC----------------CcEEEEEeecceEEEeeccCC----------CCeeEEEEc-CCC---CEEEEEeCCCcEEEE
Q 001319 866 ED----------------STIHIYNVRVDEVKSKLKGHQ----------KRITGLAFS-TSL---NILVSSGADAQLCVW 915 (1101)
Q Consensus 866 ~d----------------g~v~iwd~~~~~~~~~~~~h~----------~~V~~l~~s-~d~---~~l~s~s~Dg~v~lw 915 (1101)
.+ +.|..+|..+|+.+-.++... .++. +... .+| +.++.++.+|.+.++
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~~~~G~l~~l 338 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHPDRNGIVYTL 338 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEECTTSEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEECCCcEEEEE
Confidence 55 379999999999887665322 1121 2222 467 467788999999999
Q ss_pred ECCCCccccceEEee----------cCCCC-----------------------CCCcceEEEcCCCCEEEEE--------
Q 001319 916 SIDTWEKRKSVTIHI----------PAGKT-----------------------PTGDTRVQFNADQVRMLVV-------- 954 (1101)
Q Consensus 916 d~~~~~~~~~~~~~~----------~~~~~-----------------------~~~v~~~~~s~d~~~l~~~-------- 954 (1101)
|..+|+.+-...... ..+.. ...-..++++|+..++.+.
T Consensus 339 D~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (599)
T 1w6s_A 339 DRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFFMGINHICMDW 418 (599)
T ss_dssp ETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEE
T ss_pred ECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEEEeccccceee
Confidence 999998764432110 00000 0111346777776665542
Q ss_pred --------------------------------eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC
Q 001319 955 --------------------------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG 1002 (1101)
Q Consensus 955 --------------------------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg 1002 (1101)
..+.|..||+.+++.+-..... .+...-.+.-.|.+++.++.||
T Consensus 419 ~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~----~~~~~g~~~tagg~vf~gt~dg 494 (599)
T 1w6s_A 419 EPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDG 494 (599)
T ss_dssp EECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTS
T ss_pred ecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC----CCccCcceEecCCEEEEECCCC
Confidence 2367888888888887666432 1111111223577888899999
Q ss_pred cEEEEeCCCCceeEeeCC
Q 001319 1003 NIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 1003 ~i~vwd~~~~~~~~~~~~ 1020 (1101)
.++.||.++|+.+-++..
T Consensus 495 ~l~A~D~~tG~~lW~~~l 512 (599)
T 1w6s_A 495 YLKARDSDTGDLLWKFKI 512 (599)
T ss_dssp EEEEEETTTCCEEEEEEC
T ss_pred eEEEEECCCCCEEEEeeC
Confidence 999999999999988764
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.82 E-value=1.5e-06 Score=104.09 Aligned_cols=190 Identities=12% Similarity=0.130 Sum_probs=124.5
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecCCcCe-----------EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV-----------YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY 534 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v-----------~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~ 534 (1101)
.++.++.++.|..+| .+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++.+...
T Consensus 68 ~vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~v~v~~~dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 68 VIYTSMSWSRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVAL----WGDKVYVGTLDGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp EEEEEEGGGEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEE----EBTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEECCCChhceEECCCCCccccccccccCCccceEE----ECCEEEEEcCCCEEEEEECCCCCEeeee
Confidence 366666788999999 8999987775432210 11121 2357888889999999999999998876
Q ss_pred cCCCC----ceEE-EEEccCCCEEEEeecCC--CCCceEEEEeCCCCeeEEEecccCC----------------------
Q 001319 535 DAPGH----WCTT-MLYSADGSRLFSCGTSK--DGDSFLVEWNESEGTIKRTYAGFRK---------------------- 585 (1101)
Q Consensus 535 ~~~~~----~v~~-~~~s~d~~~l~~~~~~~--~~~~~i~iwd~~~~~~~~~~~~~~~---------------------- 585 (1101)
..... .+.+ ..+ .++ .++++.... ..++.|..+|..+|+.+-.+.....
T Consensus 144 ~~~~~~~~~~~~~~P~v-~~~-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~ 221 (668)
T 1kv9_A 144 QTTDPAKPYSITGAPRV-VKG-KVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQ 221 (668)
T ss_dssp ECSCTTSSCBCCSCCEE-ETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSC
T ss_pred ccCCCCCcceecCCCEE-ECC-EEEEeCCCCCcCCCCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccc
Confidence 54311 1111 111 133 455443211 1258899999999999887753110
Q ss_pred --------cceEEEEEeCCCCEEEEEeCCC-------------------cEEEEECCCCeeeEeeccCCCC-------CC
Q 001319 586 --------KSNGVVQFDTTQNHFLAVGEDS-------------------QIKFWDMDNVNILTSTDAEGGL-------PN 631 (1101)
Q Consensus 586 --------~~v~~~~~~~~~~~l~~~~~dg-------------------~i~iwd~~~~~~~~~~~~~~~~-------~~ 631 (1101)
.....+++.++.+.++.+..++ .|..+|..+|+.+..++...+. .+
T Consensus 222 ~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~ 301 (668)
T 1kv9_A 222 YWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQ 301 (668)
T ss_dssp HHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSC
T ss_pred eeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCC
Confidence 0112468888888998887766 3999999999999887653221 11
Q ss_pred CCeeEEecCCC---EEEEEEcCCcEEEEEccccc
Q 001319 632 LPRLRFSKEGN---LLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 632 v~~v~~s~~g~---~l~~~~~d~~i~iwd~~~~~ 662 (1101)
.....+..+|+ .++.++.+|.++++|..++.
T Consensus 302 ~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~ 335 (668)
T 1kv9_A 302 ITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGK 335 (668)
T ss_dssp EEEEEEEETTEEEEEEEECCTTSEEEEEETTTCC
T ss_pred cEEEEeccCCcEEEEEEEECCCCEEEEEECCCCC
Confidence 11222333665 68889999999999999883
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.80 E-value=2.4e-06 Score=89.90 Aligned_cols=202 Identities=8% Similarity=-0.013 Sum_probs=133.4
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEe
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~ 883 (1101)
....+++++++..|..+. ++.|.+++.........+.........+++++.++.++++-...+.|.++++........
T Consensus 37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~ 116 (267)
T 1npe_A 37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL 116 (267)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence 467899999777666654 688999999766554444333356889999983345555555678999999864332222
Q ss_pred eccCCCCeeEEEEcCCCCEEEEEeC---CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCe
Q 001319 884 LKGHQKRITGLAFSTSLNILVSSGA---DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQ 958 (1101)
Q Consensus 884 ~~~h~~~V~~l~~s~d~~~l~s~s~---Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~ 958 (1101)
..........++++|++..|..+.. .+.|..++++.... . .+. .. .......+++++++..|.+++ .+.
T Consensus 117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~-~--~~~--~~-~~~~P~gia~d~~~~~lyv~d~~~~~ 190 (267)
T 1npe_A 117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR-R--ILA--QD-NLGLPNGLTFDAFSSQLCWVDAGTHR 190 (267)
T ss_dssp ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC-E--EEE--CT-TCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc-E--EEE--EC-CCCCCcEEEEcCCCCEEEEEECCCCE
Confidence 2222246789999997666655543 36788888865321 1 111 11 114567899999988877755 678
Q ss_pred EEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeC
Q 001319 959 LAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
|.+++.+.......... ......+++. +..|+.+. ..+.|.++|..+++.+..+.
T Consensus 191 I~~~~~~g~~~~~~~~~----~~~P~gi~~d--~~~lyva~~~~~~v~~~d~~~g~~~~~i~ 246 (267)
T 1npe_A 191 AECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (267)
T ss_dssp EEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred EEEEecCCCceEEEecC----CCCceEEEEe--CCEEEEEECCCCeEEEEeCCCCCceEEEc
Confidence 99999986554333332 2334566654 45555444 56899999999999888876
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.79 E-value=0.0013 Score=80.68 Aligned_cols=537 Identities=10% Similarity=0.045 Sum_probs=285.2
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
...|.+|.-..+|. |-.|..+| +..||-..-+..... -......|.++.-..+|. |..|+.+| +..+| .++
T Consensus 21 ~n~V~~I~qD~~G~-lWigT~~G-L~ryDG~~~~~~~~~--~~~~~~~i~~i~~d~~g~---lWigT~~G-l~~yd~~~~ 92 (758)
T 3ott_A 21 ASVVSCFLQDSEGL-IWIGSNKG-LFSYDGYSTQQHFTY--GENNNTRIYCGVIIDNTY---LYMGTDNG-ILVYNYRAD 92 (758)
T ss_dssp CCCEEEEEECTTSC-EEEEESSC-EEEECSSCEEECSCT--TSTTSSCEEEEEEETTTE---EEEEETTE-EEEEETTTT
T ss_pred cceEEEEEECCCCC-EEEEECCC-ccccCCCceEEEEcc--CCCCCceEEEEEEcCCCc---EEEEeCCC-eEEEeCCCC
Confidence 56799998887775 44566777 666763221111100 011234688888877765 55555555 78899 554
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee----ccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----YDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+...........|.++.. .+| .|..++.+ .+..+|..+...... .......|.++....+|...+..
T Consensus 93 ~f~~~~~~~~~~i~~i~~---~~g-~lWigt~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWigt---- 163 (758)
T 3ott_A 93 RYEQPETDFPTDVRTMAL---QGD-TLWLGALN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRTKDNQIYVGT---- 163 (758)
T ss_dssp EECCCSCCCCSCEEEEEE---ETT-EEEEEETT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEECTTCCEEEEE----
T ss_pred EEECcccCCCceEEEEEe---cCC-cEEEEcCC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEcCCCCEEEEe----
Confidence 322211112234666643 244 45555555 677788765543321 11234468888888888766643
Q ss_pred CCCceEEEEeCCCCeeEEEeccc----CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGF----RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
.+-|..++..+++........ ....+.++....++..|..|+. +-+..+|..+++........ ...|.++.
T Consensus 164 --~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~~~~~~~~l~--~~~i~~i~ 238 (758)
T 3ott_A 164 --YNGLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTGQIKQTEAFH--NNSIKSLA 238 (758)
T ss_dssp --TTEEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTTEEEEEEEEE--EEEEEEEE
T ss_pred --CCCHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCCeEEeccCCC--CCeEEEEE
Confidence 224778888776643321111 1223677777777776666664 46888998776543221111 12467777
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
...+|.+.+ |+.+ -+.+++..+.. +..+..... +..
T Consensus 239 ~d~~g~lWi-gT~~-Gl~~~~~~~~~--~~~~~~~~~--------------~~~-------------------------- 274 (758)
T 3ott_A 239 LDGNGDLLA-GTDN-GLYVYHNDTTP--LQHIIHDSR--------------NIQ-------------------------- 274 (758)
T ss_dssp ECTTCCEEE-EETT-EEEEECCTTSC--CEEECCCTT--------------CTT--------------------------
T ss_pred EcCCCCEEE-EeCC-ceeEEecCCCc--EEEEEcCCC--------------CcC--------------------------
Confidence 777776555 4444 56677654431 111100000 000
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
.-....|.++....+|. |..++..| +.++.... . . ..+.. .
T Consensus 275 -----------------~l~~~~i~~i~~D~~g~-lWiGT~~G-l~~~~~~~-~----~--------~~~~~-------~ 315 (758)
T 3ott_A 275 -----------------SLTNNIIWNIFADQEHN-IWLGTDYG-ISLSRYNS-A----L--------QFIPI-------S 315 (758)
T ss_dssp -----------------SCSCSCEEEEEECTTCC-EEEEESSS-EEEECCCC------C--------EEEEH-------H
T ss_pred -----------------cCCcCeEEEEEEcCCCC-EEEEeCCc-ccccccCC-c----e--------eEEec-------c
Confidence 01334567777666665 44455555 33322100 0 0 00000 0
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCce--EEEEeeC-------CCCCeeEEEEecCCCCEEEEEeCC
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK--VMTTFMS-------PPPASTFLAFHPQDNNIIAIGTED 867 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~--~~~~~~~-------~~~~i~~l~~s~~~~~~la~g~~d 867 (1101)
..........|.++....+|.+-+... +.+..++..+++ ....+.. ....|.++.-.. ++.+. .|+ +
T Consensus 316 ~~~~~~~~~~v~~i~~D~~g~lWiGt~-~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~-~g~lW-igt-~ 391 (758)
T 3ott_A 316 QITGTGDGNQFYSLFRDSKGFYWFGGA-NGLIRFTDPAGERHDAIWYRMGDKTYPLSHNRIRHIYEDK-EQQLW-IAT-D 391 (758)
T ss_dssp HHSCSCCCCBEEEEEECTTCCEEEEET-TEEEEESCTTSSCCCCEEECTTCSSSCCSCSCEEEEEECT-TSCEE-EEE-T
T ss_pred cCCCCCCCceEEEEEEcCCCCEEEeeC-CcceeecccccccceeEEeccCCcCCCCCCCceEEEEECC-CCCEE-EEe-C
Confidence 000001335688898888888766554 456667665432 1112211 123578888776 56554 455 4
Q ss_pred CcEEEEEeecceEEEee--cc----CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccc--cce----EEeecCCCC
Q 001319 868 STIHIYNVRVDEVKSKL--KG----HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR--KSV----TIHIPAGKT 935 (1101)
Q Consensus 868 g~v~iwd~~~~~~~~~~--~~----h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~--~~~----~~~~~~~~~ 935 (1101)
+-+..|+..+++..... .. ....|.++....+|++.+ |+..+-|.++|..+.... ... ......+-.
T Consensus 392 ~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gT~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 470 (758)
T 3ott_A 392 GSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDTAGQLWI-STCLGGIFVVDKHKLMQSTSGQYIAEQNYSVHNGLS 470 (758)
T ss_dssp TEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECTTSEEEE-EESSSCEEEEEHHHHHHCCSSEEECSEEECGGGTCS
T ss_pred CcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcCCCCEEE-EECCCceEEEccccccccCCcceecccccccccccc
Confidence 56999998877654321 11 234588888877766544 665555888885431000 000 111112222
Q ss_pred CCCcceEEEcCCCCEEE-EEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCce
Q 001319 936 PTGDTRVQFNADQVRML-VVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRL 1014 (1101)
Q Consensus 936 ~~~v~~~~~s~d~~~l~-~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~ 1014 (1101)
...+.++...++|.+.+ .+..+.|..||..+++..............+.++....+|.+.+. +..| +..||..++..
T Consensus 471 ~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~~~~~~~~~~~~~~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~ 548 (758)
T 3ott_A 471 GMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTKLFADELTGEKSPNYLLCDEDGLLWVG-FHGG-VMRINPKDESQ 548 (758)
T ss_dssp CSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEEECTTTSCGGGCEEEEEECTTSCEEEE-ETTE-EEEECC--CCC
T ss_pred cceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEEecCCCcCCCcccceEEECCCCCEEEE-ecCc-eEEEecCCCce
Confidence 24588899999999876 345667999999877654432111111356889998889987664 4444 88888876653
Q ss_pred eEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1015 RCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1015 ~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.. +. ...+ ... .+.++.. . ++.+.+++ .. .|..+|..+.+
T Consensus 549 ~~-~~-~~gl------~~~--~i~~i~~-~-~g~lWi~t-~~-Gl~~~~~~~~~ 588 (758)
T 3ott_A 549 QS-IS-FGSF------SNN--EILSMTC-V-KNSIWVST-TN-GLWIIDRKTMD 588 (758)
T ss_dssp CB-CC-CCC---------C--CEEEEEE-E-TTEEEEEE-SS-CEEEEETTTCC
T ss_pred EE-ec-ccCC------Ccc--ceEEEEE-C-CCCEEEEC-CC-CeEEEcCCCce
Confidence 22 11 0001 111 2345544 2 45555544 44 47777877655
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=98.79 E-value=0.0016 Score=81.84 Aligned_cols=569 Identities=8% Similarity=0.022 Sum_probs=277.2
Q ss_pred EEEEEccCCCEEEEEECCCeEEEEeecCCcc-----cccceeeecccCcEEEEEEecCC----CceEEEEe--cCCceEE
Q 001319 410 SRVAWSPDGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDLAFAYPN----KLLCVVTC--GDDKLIK 478 (1101)
Q Consensus 410 ~~~~~spdg~~las~~~d~~i~vwd~~~~~~-----~~~~~~l~~h~~~V~~l~~s~d~----~~~~l~s~--~~d~~v~ 478 (1101)
+++++-.+| +|+.|+..|.=.+|.+..... +....++ ..-++|.+++..... .+ +++.+ +.+|.++
T Consensus 330 ssl~~l~~g-~lFvgS~~Gds~l~~~~~~~~~~~~~~~~~~~~-~N~~PI~D~~v~d~~~~~~~~-i~~~sG~g~~gsL~ 406 (1158)
T 3ei3_A 330 ECLTYLDNG-VVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETF-TNLGPIVDMCVVDLERQGQGQ-LVTCSGAFKEGSLR 406 (1158)
T ss_dssp SEEEECSTT-EEEEECSSSCEEEEEECSSCCTTSCCEEEEEEE-CCCCSEEEEEEECTTSSSCCE-EEEEECCGGGCEEE
T ss_pred cEEEEECCC-EEEEEEecCCcEEEEEecCCCCccceEEeEeee-cCcCCceeEEEEccCCCCCCe-EEEEECcCCCCeEE
Confidence 566666555 788898888777777764322 1212222 345689888886432 22 33322 2567898
Q ss_pred EEE--cCCceeEEeec-CCcCeEEEeccc-CCCccEEEEeccCCeEEEEecCCCCeeeeccCC-----CCceEEEEEccC
Q 001319 479 VWE--LSGRKLFNFEG-HEAPVYSICPHH-KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP-----GHWCTTMLYSAD 549 (1101)
Q Consensus 479 iwd--~~~~~~~~~~~-h~~~v~~v~~~~-~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~-----~~~v~~~~~s~d 549 (1101)
+.. ..-+.+..+.- .-..++.+.... +....+|+.+..+.+ +++.+... ........ ...+.+-.+ .+
T Consensus 407 ~lr~Gi~~~~~~~~~l~gv~~iWtl~~~~~~~~~~yLvlS~~~~T-~Vl~i~~e-~veev~~~gf~~~~~TL~~~~l-~~ 483 (1158)
T 3ei3_A 407 IIRNGIGIHEHASIDLPGIKGLWPLRSDPNRETDDTLVLSFVGQT-RVLMLNGE-EVEETELMGFVDDQQTFFCGNV-AH 483 (1158)
T ss_dssp EEEESBCEEEEEEECCCSCCEEEEECCCSSCSSCCEEEEEETTEE-EEEEEETT-EEEEECCTTCCSSSCEEEEEEE-TT
T ss_pred EEecCCCEEEEEeecCCCccEEEEEeecCCCCCCCEEEEECCCCe-EEEEEeCC-cccccccccccCCCCcEEEEEc-CC
Confidence 887 44443333321 123455554321 123357776666666 45554321 22221111 111222222 22
Q ss_pred CCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCC
Q 001319 550 GSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 550 ~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
..++=.. ...|++.+...+..+..+....+..|...+.+ +.+++.+. ++.+.++.+..+++..... ..-.
T Consensus 484 -~~ivQVt-----~~~Irli~~~~~~~~~~w~~p~~~~I~~As~n--~~~vvva~-g~~l~~fel~~~~L~~~~~-~~l~ 553 (1158)
T 3ei3_A 484 -QQLIQIT-----SASVRLVSQEPKALVSEWKEPQAKNISVASCN--SSQVVVAV-GRALYYLQIHPQELRQISH-TEME 553 (1158)
T ss_dssp -TEEEEEE-----SSCEEEEESSSCCEEEEECCTTCCCCCEEEEC--SSEEEEEE-TTEEEEEEEETTEEEEEEE-EECS
T ss_pred -CeEEEEe-----cCEEEEEECCCCeEEEEEECCCCCEEEEEEeC--CCEEEEEE-CCEEEEEEeeCCceeeecc-cCCC
Confidence 2444333 44577788766666666765544456655554 34666665 6788888877654332211 1112
Q ss_pred CCCCeeEEecC------CCEEEEEEc-CCcEEEEEccccccccccccCCCcccccCcceeeeeeecc--ccccccCCCCC
Q 001319 630 PNLPRLRFSKE------GNLLAVTTA-DNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA--SSAVSSGTPAN 700 (1101)
Q Consensus 630 ~~v~~v~~s~~------g~~l~~~~~-d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~--~~l~~~~~~~~ 700 (1101)
..|.|+++.|. +.++++|.. |++++|+++.+. +.+....-. . .....++.+..-+ -++..+...+.
T Consensus 554 ~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l-~~~~~~~L~-~---~~~p~si~l~~~~~~~~L~igl~dG~ 628 (1158)
T 3ei3_A 554 HEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSF-ELLHKEMLG-G---EIIPRSILMTTFESSHYLLCALGDGA 628 (1158)
T ss_dssp SCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTC-CEEEEEECC-S---SCCEEEEEEEEETTEEEEEEEETTSE
T ss_pred CceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCC-CeEEEEECC-C---CCCCcEEEEEEeCCCcEEEEEeCCCe
Confidence 36899998763 479999996 999999999754 222111100 0 0111222222111 12222222221
Q ss_pred cceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc-cEEEeecCCeEEEEEecCCCCCCCCCeee
Q 001319 701 CKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHRNEQNPSGKATA 779 (1101)
Q Consensus 701 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~~w~~~~~~~~~~~~~~~ 779 (1101)
.-....... ...+.+. +...+ ...++.=..+...|. .+++++ +....++.-
T Consensus 629 l~~~~~d~~---tg~l~d~------r~~~L-----G~~pv~L~~~~~~~~~~V~a~s-~rp~liy~~------------- 680 (1158)
T 3ei3_A 629 LFYFGLNIE---TGLLSDR------KKVTL-----GTQPTVLRTFRSLSTTNVFACS-DRPTVIYSS------------- 680 (1158)
T ss_dssp EEEEEECTT---TCCEEEE------EEEEC-----CSSCCEEEEEESSSCEEEEEES-SSCEEEEES-------------
T ss_pred EEEEEEcCC---CCccccc------eeEEc-----CCCceEEEEEeeCCceeEEEEC-CCCEEEEEc-------------
Confidence 100000000 0001000 00111 011222222222222 222222 222222211
Q ss_pred eccccccccCCccceeeccCCCCCCCCEe-EEEecCC--CCeEEEEcCCeEEEEECCCce--EEEEeeCCCCCeeEEEEe
Q 001319 780 SAVPQHWLPSSGLLMANDVAGVNLEEAVP-CIALSKN--DSYVMSATGGKISLFNMMTFK--VMTTFMSPPPASTFLAFH 854 (1101)
Q Consensus 780 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~-~~~~s~d--g~~la~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s 854 (1101)
.+.+....+ ....+. ...|+.. ..-++..+++.+++..+++.. .++.+.- ...+..++++
T Consensus 681 ----------~~~l~~s~l----~~~~v~~~~~F~se~~~~g~v~~~~~~LrI~~i~~~~~~~~~~ipL-~~Tprri~y~ 745 (1158)
T 3ei3_A 681 ----------NHKLVFSNV----NLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPL-YESPRKICYQ 745 (1158)
T ss_dssp ----------SSSEEEEEB----SSSCCCEEEEECCSSSTTEEEEECSSCEEEEEECCSSSEEEEEEEC-SSEEEEEEEE
T ss_pred ----------CCceEEecc----ChHHhceEeccCcccCCCcEEEEcCCceEEEEecccCCeeEEEEeC-CCCceEEEEc
Confidence 011111111 111222 2334332 234555556668887765432 2333332 3567888888
Q ss_pred cCCCCEEEEEeCC-------------------------------------------------CcEEEEEeecceEEEeec
Q 001319 855 PQDNNIIAIGTED-------------------------------------------------STIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 855 ~~~~~~la~g~~d-------------------------------------------------g~v~iwd~~~~~~~~~~~ 885 (1101)
| ..+.++++..+ +.|++.|-.+.+.+..+.
T Consensus 746 ~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~ 824 (1158)
T 3ei3_A 746 E-VSQCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFSSSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQ 824 (1158)
T ss_dssp G-GGTEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC----------CCCEEEEEEEEEEETTTCCEEEEEE
T ss_pred C-CCCEEEEEEEeccccccccccchhhhhhhhhhhhhcccccccccccccCchhhcCCceeeEEEEEEeCCCCeEEEEEe
Confidence 8 55554444311 134555555555444332
Q ss_pred c-CCCCeeEEE---EcCC-CCEEEEEe----------CCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 886 G-HQKRITGLA---FSTS-LNILVSSG----------ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 886 ~-h~~~V~~l~---~s~d-~~~l~s~s----------~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
- ....+.+++ |..+ ..++++|. ..|.|.++++..++...... ... .+.+++++--. | +
T Consensus 825 l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~v~~~kL~lv~~-~~v----~g~v~al~~~~-g-~ 897 (1158)
T 3ei3_A 825 FLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQYSDGKLQTVAE-KEV----KGAVYSMVEFN-G-K 897 (1158)
T ss_dssp CCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEEEETTEEEEEEE-EEE----SSCEEEEEEET-T-E
T ss_pred CCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEEEECCEEEEEEE-EEc----CCcCEEEeeeC-C-E
Confidence 1 122344444 3333 46888776 34789999997433221111 111 15566655432 3 7
Q ss_pred EEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE--eCCCCceeEeeCCCCcCCCcc
Q 001319 951 MLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF--DADTLRLRCYIAPSTYLSPSV 1028 (1101)
Q Consensus 951 l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~ 1028 (1101)
|+++-.+++++|++...+.++ ..... -..|..+.....|.+++.|+.-..|.++ +...+++...-.
T Consensus 898 Lla~ig~~l~vy~l~~~~~L~-~~~~~--~~~i~~~~l~~~~~~I~vgD~~~Sv~~~~y~~~~~~L~~~a~--------- 965 (1158)
T 3ei3_A 898 LLASINSTVRLYEWTTEKELR-TECNH--YNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIAR--------- 965 (1158)
T ss_dssp EEEEETTEEEEEEECTTSCEE-EEEEE--CCCSCEEEEEEETTEEEEEESSBCEEEEEEETTTTEEEEEEE---------
T ss_pred EEEEcCCEEEEEECCCCceEE-EEeec--cccEEEEEEeccCCEEEEEEhhheEEEEEEEcCCCeEEEEEe---------
Confidence 777888999999998765444 11100 1112233333357789999877777765 444444433333
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1029 LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1029 ~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
+-.+.+++++.+-. ...++.+..+|++.+.....
T Consensus 966 --D~~~~~vta~~~ld--~~t~l~aD~~gNl~vl~~~~ 999 (1158)
T 3ei3_A 966 --DFNPNWMSAVEILD--DDNFLGAENAFNLFVCQKDS 999 (1158)
T ss_dssp --CCSCBCEEEEEEEE--TTEEEEEETTSEEEEEEECT
T ss_pred --ecccccEEEEEEEc--cCcEEEEcCCCcEEEEecCC
Confidence 34556778888875 35788899999999998754
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1.7e-06 Score=101.18 Aligned_cols=191 Identities=12% Similarity=0.103 Sum_probs=123.4
Q ss_pred CCeEEEEECCCceEEEEeeCCCCC--------------------------------------eeEEEEecCCCCEEEEEe
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPA--------------------------------------STFLAFHPQDNNIIAIGT 865 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~--------------------------------------i~~l~~s~~~~~~la~g~ 865 (1101)
++.|..+|..+|+.+.++...... ...+++.+ ....+..++
T Consensus 175 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~-~~g~vy~~~ 253 (571)
T 2ad6_A 175 RGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDP-KLNLFYYGS 253 (571)
T ss_dssp CCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEET-TTTEEEEEC
T ss_pred CCEEEEEECCCCcEEEEEccCCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcC-CCCeEEEEC
Confidence 567888888888887776542211 02356777 445666665
Q ss_pred CC----------------CcEEEEEeecceEEEeecc--CC--------CCeeEEEEcCCCC---EEEEEeCCCcEEEEE
Q 001319 866 ED----------------STIHIYNVRVDEVKSKLKG--HQ--------KRITGLAFSTSLN---ILVSSGADAQLCVWS 916 (1101)
Q Consensus 866 ~d----------------g~v~iwd~~~~~~~~~~~~--h~--------~~V~~l~~s~d~~---~l~s~s~Dg~v~lwd 916 (1101)
.+ +.|..+|..+|+.+..++. |. .++. +....+|+ .++.++.+|.+.++|
T Consensus 254 g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~l-~~~~~~G~~~~~v~~~~~~G~l~~lD 332 (571)
T 2ad6_A 254 GNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMVL-TDQPVNGKMTPLLSHIDRNGILYTLN 332 (571)
T ss_dssp CCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEE-EEEEETTEEEEEEEEECTTSEEEEEE
T ss_pred CCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCEE-EecccCCcEEEEEEEeCCCcEEEEEE
Confidence 32 3599999999998876642 21 2221 22234674 577889999999999
Q ss_pred CCCCccccceEEee----------cCCCC------------------C-----CCcceEEEcCCCCEEEEEe--------
Q 001319 917 IDTWEKRKSVTIHI----------PAGKT------------------P-----TGDTRVQFNADQVRMLVVH-------- 955 (1101)
Q Consensus 917 ~~~~~~~~~~~~~~----------~~~~~------------------~-----~~v~~~~~s~d~~~l~~~~-------- 955 (1101)
..+|+.+....... ..+.. + ..-..++++|+..++.+..
T Consensus 333 ~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~ 412 (571)
T 2ad6_A 333 RENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESRTLYAGLNHICMDWE 412 (571)
T ss_dssp TTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEEEEEECEEEEEE
T ss_pred CCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCCEEEEEchhcccccc
Confidence 99998654432211 00000 0 0013568888887776632
Q ss_pred ------------------------------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001319 956 ------------------------------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIG 1005 (1101)
Q Consensus 956 ------------------------------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~ 1005 (1101)
++.|..||..+++.+...... .++....+...+..++.++.||.|+
T Consensus 413 ~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~----~~~~~~~~~t~gg~v~~g~~dg~l~ 488 (571)
T 2ad6_A 413 PFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEK----FAAWGGTLYTKGGLVWYATLDGYLK 488 (571)
T ss_dssp ECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEE
T ss_pred ccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCC----CCccceeEEECCCEEEEEcCCCeEE
Confidence 368999999999987776542 2222222333567788899999999
Q ss_pred EEeCCCCceeEeeCC
Q 001319 1006 VFDADTLRLRCYIAP 1020 (1101)
Q Consensus 1006 vwd~~~~~~~~~~~~ 1020 (1101)
.||.++|+.+.++..
T Consensus 489 a~D~~tG~~lw~~~~ 503 (571)
T 2ad6_A 489 ALDNKDGKELWNFKM 503 (571)
T ss_dssp EEETTTCCEEEEEEC
T ss_pred EEECCCCCEEEEEeC
Confidence 999999999988874
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.77 E-value=1e-06 Score=90.04 Aligned_cols=201 Identities=11% Similarity=0.049 Sum_probs=141.0
Q ss_pred CEeEEEecCCCCeEEEEc---CCeEEEEECCCceEEEEeeCCCC-CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE
Q 001319 806 AVPCIALSKNDSYVMSAT---GGKISLFNMMTFKVMTTFMSPPP-ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 881 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~-~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~ 881 (1101)
....++|++|+.+.++.+ ++.|.++|+.+++.+..+..... ....+++. ++++.++.-.++.+.++|..+.+.+
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~ 99 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNI 99 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEE
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEE
Confidence 457899999876666543 47899999999999988764222 22345554 3455555567899999999999999
Q ss_pred EeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEE
Q 001319 882 SKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLA 960 (1101)
Q Consensus 882 ~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~ 960 (1101)
.++..-... ...+++||+.|+++..++.|.++|..+.+......+... +........+.|. +|...+.. .++.|.
T Consensus 100 ~~i~~g~~~--g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~-~~p~~~~nele~~-dg~lyvn~~~~~~V~ 175 (266)
T 2iwa_A 100 KNFTHQMKD--GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN-GHRVIRLNELEYI-NGEVWANIWQTDCIA 175 (266)
T ss_dssp EEEECCSSS--CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTSSEEE
T ss_pred EEEECCCCC--eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC-CcccccceeEEEE-CCEEEEecCCCCeEE
Confidence 888532122 344566888777777788999999999877665554321 1111235677777 67544443 378999
Q ss_pred EEEcCCceeeeEeccCC----------CCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCC
Q 001319 961 IYDASKMERIRQWTPQD----------ALSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~----------~h~~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~~~ 1012 (1101)
+.|..+++.+..+.... ........++|+|+++.++ ++...+.+++.++...
T Consensus 176 vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~~~ 238 (266)
T 2iwa_A 176 RISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLHLV 238 (266)
T ss_dssp EEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEEEC
T ss_pred EEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEecc
Confidence 99999999988886520 0024568999999987655 5667888988887664
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=6.8e-07 Score=91.39 Aligned_cols=222 Identities=11% Similarity=0.015 Sum_probs=148.2
Q ss_pred ceEEEEeeCCCC--CeeEEEEecCCCCEEEEEeC--CCcEEEEEeecceEEEeeccCC-CCeeEEEEcCCCCEEEEEeCC
Q 001319 835 FKVMTTFMSPPP--ASTFLAFHPQDNNIIAIGTE--DSTIHIYNVRVDEVKSKLKGHQ-KRITGLAFSTSLNILVSSGAD 909 (1101)
Q Consensus 835 ~~~~~~~~~~~~--~i~~l~~s~~~~~~la~g~~--dg~v~iwd~~~~~~~~~~~~h~-~~V~~l~~s~d~~~l~s~s~D 909 (1101)
.+.+.++. |.. ....++|++ ++.++++.+. +++|.++|+.+++.+..+.-.. .....+++.. ++..++.-.+
T Consensus 9 ~~vv~~~p-~~~~~f~~Gl~~~~-dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~ 85 (266)
T 2iwa_A 9 VEVLNEFP-HDPYAFTQGLVYAE-NDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLLN-EKLYQVVWLK 85 (266)
T ss_dssp EEEEEEEE-CCTTCCEEEEEECS-TTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEETTC
T ss_pred ceEEEEEE-CCCCCCcccEEEeC-CCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEeC-CEEEEEEecC
Confidence 34556664 333 357899998 6655555443 5799999999999988765222 1223455552 2344455567
Q ss_pred CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCC--CCCCEEEE
Q 001319 910 AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA--LSAPISCA 986 (1101)
Q Consensus 910 g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~--h~~~v~~v 986 (1101)
+.+.++|..+.+.+..+... .+ ....+++||+.+++++ ++.|.++|..+.+.+..+..... .-..+..+
T Consensus 86 ~~v~viD~~t~~v~~~i~~g--~~------~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nel 157 (266)
T 2iwa_A 86 NIGFIYDRRTLSNIKNFTHQ--MK------DGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNEL 157 (266)
T ss_dssp SEEEEEETTTTEEEEEEECC--SS------SCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEE
T ss_pred CEEEEEECCCCcEEEEEECC--CC------CeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeE
Confidence 89999999998776554322 01 1244667888777754 78999999999998888775321 01246788
Q ss_pred EEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 987 VYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 987 ~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.|. +|+..+....++.|.+.|..+++.+.++......... ...+.....+.+++|+|...++++++...++|.+-++.
T Consensus 158 e~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l~ 236 (266)
T 2iwa_A 158 EYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKLH 236 (266)
T ss_dssp EEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEEE
T ss_pred EEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEEe
Confidence 888 7765555556889999999999999988742110000 00012223457999999666788888899999999987
Q ss_pred CCC
Q 001319 1066 ESE 1068 (1101)
Q Consensus 1066 ~~~ 1068 (1101)
+.+
T Consensus 237 ~~~ 239 (266)
T 2iwa_A 237 LVR 239 (266)
T ss_dssp ECC
T ss_pred ccc
Confidence 654
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.70 E-value=2.4e-06 Score=99.95 Aligned_cols=109 Identities=8% Similarity=0.052 Sum_probs=70.1
Q ss_pred cEEEEecc-CCeEEEEec-CCCCeeeeccCCCCc-----------eEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 509 ~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
..++.++. ++.|..+|. .+++.+..+...... ...+++ ++..+++++. ++.|..+|..+|+
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~v~~~----dg~l~alD~~tG~ 136 (571)
T 2ad6_A 63 DMMYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAY--GAGQIVKKQA----NGHLLALDAKTGK 136 (571)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEE--ETTEEEEECT----TSEEEEEETTTCC
T ss_pred CEEEEEeCCCCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEE--ECCEEEEEeC----CCEEEEEECCCCC
Confidence 35666666 788989998 888888776544320 012232 3445666543 7889999999999
Q ss_pred eEEEecccCC---cceE-EEEEeCCCCEEEEEeC------CCcEEEEECCCCeeeEeecc
Q 001319 576 IKRTYAGFRK---KSNG-VVQFDTTQNHFLAVGE------DSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 576 ~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~~------dg~i~iwd~~~~~~~~~~~~ 625 (1101)
.+-.+..... ..+. ...+. +..+++++. ++.|+.+|..+|+.+..+..
T Consensus 137 ~~W~~~~~~~~~~~~~~~~P~v~--~g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 137 INWEVEVCDPKVGSTLTQAPFVA--KDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEEECCCGGGTCBCCSCCEEE--TTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEecCCCCCccceeccCCEEE--CCEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 8877653221 0111 11111 346666654 79999999999999887754
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.68 E-value=1.6e-05 Score=93.05 Aligned_cols=148 Identities=15% Similarity=0.138 Sum_probs=96.5
Q ss_pred CcEEEEEeecceEEEeecc--CC--------CCeeEEEEc-CCCC---EEEEEeCCCcEEEEECCCCccccceEEeec--
Q 001319 868 STIHIYNVRVDEVKSKLKG--HQ--------KRITGLAFS-TSLN---ILVSSGADAQLCVWSIDTWEKRKSVTIHIP-- 931 (1101)
Q Consensus 868 g~v~iwd~~~~~~~~~~~~--h~--------~~V~~l~~s-~d~~---~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~-- 931 (1101)
+.|..+|..+|+.+-.++. |. .++. +... .+|+ .++.++.+|.++++|..+|+.+-.......
T Consensus 291 ~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~l-~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~ 369 (582)
T 1flg_A 291 SGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELVL-FDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT 369 (582)
T ss_dssp SEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCEE-EEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC
T ss_pred ceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcEE-EeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc
Confidence 5899999999999877642 32 1221 1221 4674 788899999999999999987643322110
Q ss_pred --------CCC-------CC----------------------CCcceEEEcCCCCEEEEE--------------------
Q 001319 932 --------AGK-------TP----------------------TGDTRVQFNADQVRMLVV-------------------- 954 (1101)
Q Consensus 932 --------~~~-------~~----------------------~~v~~~~~s~d~~~l~~~-------------------- 954 (1101)
.+. .+ ..-..++++|+...+.+.
T Consensus 370 ~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~ 449 (582)
T 1flg_A 370 WASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPFLGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSA 449 (582)
T ss_dssp SEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCTTCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCEeEccccCCccccccccCCCceEECcCCccccCCCCceECCCCCEEEEechhcceeeecccccccCCCc
Confidence 000 00 001246777776655542
Q ss_pred --------------eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 955 --------------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 955 --------------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.++.|..||+.+++.+-...... ++..-.+...|.+++.|+.||.++.||.++|+.+-++..
T Consensus 450 ~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~----~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~ 525 (582)
T 1flg_A 450 YLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp CCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred eeccceeecCCCCCCcceEEEEECCCCCEEEEecCCC----CCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecC
Confidence 14779999999999876665431 111111222467888899999999999999999988874
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.68 E-value=1.8e-06 Score=86.88 Aligned_cols=204 Identities=11% Similarity=0.110 Sum_probs=134.5
Q ss_pred eEEEEeeCCCCC--eeEEEEecCCCCEEEEEeCCC--cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEE-eCCC
Q 001319 836 KVMTTFMSPPPA--STFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSS-GADA 910 (1101)
Q Consensus 836 ~~~~~~~~~~~~--i~~l~~s~~~~~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~-s~Dg 910 (1101)
+.+.++. |... ...+.|+ ++.++.+.+.+| .|+++|+.+++.+..+... .......+.++++.|... -.++
T Consensus 32 ~vv~~~p-hd~~~ftqGL~~~--~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~ 107 (262)
T 3nol_A 32 QIVHSYP-HDTKAFTEGFFYR--NGYFYESTGLNGRSSIRKVDIESGKTLQQIELG-KRYFGEGISDWKDKIVGLTWKNG 107 (262)
T ss_dssp EEEEEEE-CCTTCEEEEEEEE--TTEEEEEEEETTEEEEEEECTTTCCEEEEEECC-TTCCEEEEEEETTEEEEEESSSS
T ss_pred EEEEEec-CCCCcccceEEEE--CCEEEEECCCCCCceEEEEECCCCcEEEEEecC-CccceeEEEEeCCEEEEEEeeCC
Confidence 4455553 4433 4778898 457777777766 8999999999998887643 334333333345555544 4588
Q ss_pred cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCC-C-CCCEEEEE
Q 001319 911 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA-L-SAPISCAV 987 (1101)
Q Consensus 911 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~-h-~~~v~~v~ 987 (1101)
.+.+||..+.+.+..+... . ....+++|+..|++++ ++.|.++|..+.+.+..+..... . -..+..+.
T Consensus 108 ~v~v~D~~t~~~~~ti~~~-------~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe 178 (262)
T 3nol_A 108 LGFVWNIRNLRQVRSFNYD-------G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELE 178 (262)
T ss_dssp EEEEEETTTCCEEEEEECS-------S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECccCcEEEEEECC-------C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeE
Confidence 9999999998877665442 1 2234446777777754 77899999999998888766321 0 13345577
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEE
Q 001319 988 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIG 1053 (1101)
Q Consensus 988 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~ 1053 (1101)
+. +|+..+..-.++.|.+.|..+|+.+..+......+.....+....-..+++|+|...++++||
T Consensus 179 ~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 179 WV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 76 787555555788999999999999999986443221100122223457899999655556665
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.65 E-value=1.3e-05 Score=86.83 Aligned_cols=239 Identities=10% Similarity=0.020 Sum_probs=148.0
Q ss_pred EeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeC-------------------CCCCeeEEEEecCCCCEEEEEeC
Q 001319 807 VPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMS-------------------PPPASTFLAFHPQDNNIIAIGTE 866 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~-------------------~~~~i~~l~~s~~~~~~la~g~~ 866 (1101)
..+++++++|+++.++. ++.|..|+..+++....... ....+..+++.+.+++ |.++..
T Consensus 21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~ 99 (322)
T 2fp8_A 21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC 99 (322)
T ss_dssp CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence 45788999998666665 78999999876554321110 0134788999862444 555555
Q ss_pred CCcEEEEEeecceEEEee---cc-CCCCeeEEEEcC-CCCEEEEEeC-----------------CCcEEEEECCCCcccc
Q 001319 867 DSTIHIYNVRVDEVKSKL---KG-HQKRITGLAFST-SLNILVSSGA-----------------DAQLCVWSIDTWEKRK 924 (1101)
Q Consensus 867 dg~v~iwd~~~~~~~~~~---~~-h~~~V~~l~~s~-d~~~l~s~s~-----------------Dg~v~lwd~~~~~~~~ 924 (1101)
.+.|..+|..+++..... .+ .......+++.+ +|+..++-.. ++.|..||..+++...
T Consensus 100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~ 179 (322)
T 2fp8_A 100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL 179 (322)
T ss_dssp TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence 556888887655322111 11 123478899999 9987776432 3678888887665322
Q ss_pred ceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCce--eeeEeccCCCCCCCEEEEEEccCCCEEEEEeC
Q 001319 925 SVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKME--RIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000 (1101)
Q Consensus 925 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~--~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~ 1000 (1101)
... .. .....++++++++.|.+++ .+.|.+|++.... ....+... .+ ...+++.++|+++++...
T Consensus 180 ~~~-~~------~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~---~g-P~gi~~d~~G~l~va~~~ 248 (322)
T 2fp8_A 180 LLK-EL------HVPGGAEVSADSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI---PN-PGNIKRNADGHFWVSSSE 248 (322)
T ss_dssp EEE-EE------SCCCEEEECTTSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC---SS-EEEEEECTTSCEEEEEEE
T ss_pred ecc-CC------ccCcceEECCCCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC---CC-CCCeEECCCCCEEEEecC
Confidence 111 11 3456799999999777754 5789999987521 11112111 23 788999999997776544
Q ss_pred ----------CCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1001 ----------DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1001 ----------dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.+.|..+|.. ++.+..+....... ...+..+++ . ++.++++....+.|..+++....
T Consensus 249 ~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~--------~~~~~~~~~-~-~g~L~v~~~~~~~i~~~~~~~~~ 315 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFA--------GEHFEQIQE-H-DGLLYIGTLFHGSVGILVYDKKG 315 (322)
T ss_dssp ETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTT--------TSCCCEEEE-E-TTEEEEECSSCSEEEEEEC----
T ss_pred cccccccCCCccEEEEECCC-CCEEEEEECCCCCc--------cccceEEEE-e-CCEEEEeecCCCceEEEeccccc
Confidence 4678888874 77766665322110 112334555 3 57777777788999999987554
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.64 E-value=2.4e-06 Score=85.90 Aligned_cols=186 Identities=10% Similarity=0.082 Sum_probs=129.2
Q ss_pred CCEeEEEecCCCCeEEEEc-CC--eEEEEECCCceEEEEeeCCCCCeeE--EEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 805 EAVPCIALSKNDSYVMSAT-GG--KISLFNMMTFKVMTTFMSPPPASTF--LAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg--~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
.....+.|+ ++.+..+.+ +| .|+++|+++++.+..+.... .... +++. ++++.+..-.++.+.+||..+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~-~~FgeGit~~--g~~ly~ltw~~~~v~v~D~~t~~ 118 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGK-RYFGEGISDW--KDKIVGLTWKNGLGFVWNIRNLR 118 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCT-TCCEEEEEEE--TTEEEEEESSSSEEEEEETTTCC
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCC-ccceeEEEEe--CCEEEEEEeeCCEEEEEECccCc
Confidence 344778898 676655555 55 79999999999999887533 3333 4443 34555555568999999999999
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCe
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQ 958 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~ 958 (1101)
.+.++... . ....+++|++.|+.+..++.|.++|..+.+......+.. .+.....+..+.|. +|+..+.. .++.
T Consensus 119 ~~~ti~~~-~--eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~-~g~~~~~lNELe~~-~G~lyan~w~~~~ 193 (262)
T 3nol_A 119 QVRSFNYD-G--EGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTA-HGEELPELNELEWV-DGEIFANVWQTNK 193 (262)
T ss_dssp EEEEEECS-S--CCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEE-TTEECCCEEEEEEE-TTEEEEEETTSSE
T ss_pred EEEEEECC-C--CceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEecc-CCccccccceeEEE-CCEEEEEEccCCe
Confidence 99888743 2 223344577777777667889999999988776655532 11111334456776 67655444 4789
Q ss_pred EEEEEcCCceeeeEeccCC---------CCCCCEEEEEEccCCCEEEEEe
Q 001319 959 LAIYDASKMERIRQWTPQD---------ALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 959 i~v~d~~~~~~~~~~~~~~---------~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
|.+.|..+++.+..+.... ....-...|+|+|+++.|++.+
T Consensus 194 I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 194 IVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp EEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred EEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 9999999999988876531 1124568999999988877766
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.62 E-value=1.9e-05 Score=92.11 Aligned_cols=112 Identities=7% Similarity=-0.025 Sum_probs=72.2
Q ss_pred cEEEEecc-CCeEEEEec-CCCCeeeeccCCCCc-----------eEEEEEccCCCE----EEEeecCCCCCceEEEEeC
Q 001319 509 QFIFSTAI-DGKIKAWLY-DTMGSRVDYDAPGHW-----------CTTMLYSADGSR----LFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 509 ~~l~s~~~-d~~i~~wd~-~~~~~~~~~~~~~~~-----------v~~~~~s~d~~~----l~~~~~~~~~~~~i~iwd~ 571 (1101)
..++.++. ++.|..+|. .+++.+..+...... ...++++|.+.. ++.++. ++.|..+|.
T Consensus 63 g~vyv~~~~~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~----dg~l~AlDa 138 (599)
T 1w6s_A 63 GKMYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL----DGNVAALNA 138 (599)
T ss_dssp TEEEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT----TSEEEEEET
T ss_pred CEEEEEeCCCCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC----CCEEEEEEC
Confidence 35666666 788888998 888888776554321 123556443333 666653 789999999
Q ss_pred CCCeeEEEecccCC---cceE-EEEEeCCCCEEEEEe------CCCcEEEEECCCCeeeEeeccC
Q 001319 572 SEGTIKRTYAGFRK---KSNG-VVQFDTTQNHFLAVG------EDSQIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 572 ~~~~~~~~~~~~~~---~~v~-~~~~~~~~~~l~~~~------~dg~i~iwd~~~~~~~~~~~~~ 626 (1101)
.+|+.+-....... ..+. ...+. +..+++++ .+|.|+.+|..+|+.+..+...
T Consensus 139 ~TG~~~W~~~~~~~~~~~~~~ssP~v~--~g~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 139 ETGETVWKVENSDIKVGSTLTIAPYVV--KDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp TTCCEEEEEECCCGGGTCBCCSCCEEE--TTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred CCCCEEEeecCCCCCccceeecCCEEE--CCEEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 99998876653321 0111 11121 34566654 3899999999999998877543
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.59 E-value=8.1e-05 Score=87.04 Aligned_cols=376 Identities=10% Similarity=0.026 Sum_probs=197.4
Q ss_pred EEEecCCceEEEEE-cCCceeEEeecCCcCe---------EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC
Q 001319 468 VVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV---------YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537 (1101)
Q Consensus 468 l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v---------~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~ 537 (1101)
++.++.++.|..+| .+|+.+.++....... ..+++ .+..++.++.|+.|..+|..+++........
T Consensus 71 vyv~~~~~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~----~~~~v~~~t~dg~l~AlD~~TG~~~W~~~~~ 146 (582)
T 1flg_A 71 IYVTASYSRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAI----YGDKVFFGTLDASVVALNKNTGKVVWKKKFA 146 (582)
T ss_dssp EEEEETTTEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEE----ETTEEEEEETTTEEEEEESSSCCEEEEEECS
T ss_pred EEEEcCCCCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEE----ECCEEEEEeCCCEEEEEECCCCCEEeeecCC
Confidence 44444433488899 8999887775433210 11121 2346788888999999999999998776543
Q ss_pred CC----ceE-EEEEcc---CCC-EEEEeecC--CCCCceEEEEeCCCCeeEEEecccCC---------------------
Q 001319 538 GH----WCT-TMLYSA---DGS-RLFSCGTS--KDGDSFLVEWNESEGTIKRTYAGFRK--------------------- 585 (1101)
Q Consensus 538 ~~----~v~-~~~~s~---d~~-~l~~~~~~--~~~~~~i~iwd~~~~~~~~~~~~~~~--------------------- 585 (1101)
.. .+. +..+.. +|+ .+++++.. ...++.|..+|..+|+.+-.......
T Consensus 147 ~~~~~~~~~~sP~v~~~~~~G~~~v~vg~~~~e~~~~g~v~alD~~tG~~~W~~~~~~~~~~p~~~~~~~~~g~~g~~~w 226 (582)
T 1flg_A 147 DHGAGYTMTGAPTIVKDGKTGKVLLIHGSSGDEFGVVGRLFARDPDTGEEIWMRPFVEGHMGRLNGKDSTVTGDVKAPSW 226 (582)
T ss_dssp CGGGTCBCCSCCEEEECTTTCCEEEEECCBCGGGCCBCEEEEECTTTCCEEEEEESSTTCEEEETTEEEEESSCTTCTTS
T ss_pred CCCcCcccccCCEEeCCCcCCcEEEEEeccccccCCCCEEEEEECCCCCEEeecCCCccccccccCcccccccccccccC
Confidence 31 111 111112 234 45554321 01367899999999988766543110
Q ss_pred -------------------cceEEEEEeCCCCEEEEEeC--------------------C----CcEEEEECCCCeeeEe
Q 001319 586 -------------------KSNGVVQFDTTQNHFLAVGE--------------------D----SQIKFWDMDNVNILTS 622 (1101)
Q Consensus 586 -------------------~~v~~~~~~~~~~~l~~~~~--------------------d----g~i~iwd~~~~~~~~~ 622 (1101)
.....++++|+...++.+.. | +.|..+|..+|+.+..
T Consensus 227 ~~~~~~~~g~~~~~~~gGg~~w~~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~ 306 (582)
T 1flg_A 227 PDDRNSPTGKVESWSHGGGAPWQSASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWF 306 (582)
T ss_dssp CBCTTSTTSBCGGGGGCBCCCCSCCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEE
T ss_pred CCccccccccccccccCCccccCCceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEE
Confidence 01123567777788887663 2 5899999999999988
Q ss_pred eccCCCC----CCCCe-eEEe---cCCC---EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccc
Q 001319 623 TDAEGGL----PNLPR-LRFS---KEGN---LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASS 691 (1101)
Q Consensus 623 ~~~~~~~----~~v~~-v~~s---~~g~---~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~ 691 (1101)
++...+. ..+.. +.+. .+|+ .++.++.+|.++++|..++......-...... ....+... .++.
T Consensus 307 ~q~~~~d~wd~~~~~~p~l~~~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~----~~~~~~~~-~g~p 381 (582)
T 1flg_A 307 YQHTPNDAWDFSGNNELVLFDYKAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNIT----WASHIDLK-TGRP 381 (582)
T ss_dssp EESSTTCCSCCCCCCCCEEEEEECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCC----SEEEECTT-TCCE
T ss_pred EeCCCCCcccccCCCCcEEEeeecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCcc----cccccccc-CCCE
Confidence 7643221 01111 2222 4674 78889999999999999884332221110000 00000000 0000
Q ss_pred cccc-CCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCC
Q 001319 692 AVSS-GTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNE 770 (1101)
Q Consensus 692 l~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~ 770 (1101)
+... ..... +.. ........+..|...+. ..-..++++|+...+++...+-...++.....
T Consensus 382 ~~~~~~~~~~---------------~~~-~~~~~~~~~~~P~~~Gg-~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~- 443 (582)
T 1flg_A 382 VEREGQRPPL---------------PEP-GQKHGKAVEVSPPFLGG-KNWNPMAYSQDTGLFYVPANHWKEDYWTEEVS- 443 (582)
T ss_dssp EECTTCSCCC---------------CCT-TCSSCCCEEESSCTTCS-SCSSCCEECTTTCCEEEEEECEEEEEEECCCC-
T ss_pred eEccccCCcc---------------ccc-cccCCCceEECcCCccc-cCCCCceECCCCCEEEEechhcceeeeccccc-
Confidence 0000 00000 000 00000011112211111 11135677887777777665544443322100
Q ss_pred CCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeE
Q 001319 771 QNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTF 850 (1101)
Q Consensus 771 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~ 850 (1101)
...|. ......+...|++ ...+|.|..||+.+++.+.+..... .+..
T Consensus 444 -----------------~~~g~-----------~~~g~~~~~~p~~----~~~~G~l~A~D~~tG~~~W~~~~~~-~~~~ 490 (582)
T 1flg_A 444 -----------------YTKGS-----------AYLGMGFRIKRMY----DDHVGSLRAMDPVSGKVVWEHKEHL-PLWA 490 (582)
T ss_dssp -----------------CCTTS-----------CCCCEEEEEEESC----SSCSEEEEEECTTTCCEEEEEEESS-CCCS
T ss_pred -----------------ccCCC-----------ceeccceeecCCC----CCCcceEEEEECCCCCEEEEecCCC-CCcc
Confidence 00010 0000111122321 0125789999999999988776432 2222
Q ss_pred EEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe-eEEEEcCCCCEEE
Q 001319 851 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI-TGLAFSTSLNILV 904 (1101)
Q Consensus 851 l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V-~~l~~s~d~~~l~ 904 (1101)
-.... .+.++++|+.||.++.||..+|+.+.+++...+.+ .-+.|..+|+..+
T Consensus 491 g~~~t-agglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv 544 (582)
T 1flg_A 491 GVLAT-AGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL 544 (582)
T ss_dssp CCEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred cceEe-CCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence 12222 45678889999999999999999998887543322 2366667877443
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.56 E-value=5.1e-06 Score=99.80 Aligned_cols=277 Identities=8% Similarity=0.009 Sum_probs=153.3
Q ss_pred EEEEec-CCceEEEEEeccC-----------cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEcc
Q 001319 349 SMDFHP-SHQTLLLVGSSNG-----------EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416 (1101)
Q Consensus 349 ~v~fsp-dg~~llasg~~d~-----------~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp 416 (1101)
++++.| +|+ +++.|+.+. .+.+||..+++..... .....+.....++++.+
T Consensus 190 ~~av~~~~g~-l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~----------------~~~~~~~~~~~~~~~~~ 252 (656)
T 1k3i_A 190 AAAIEPTSGR-VLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRT----------------VTVTKHDMFCPGISMDG 252 (656)
T ss_dssp EEEEETTTTE-EEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCE----------------EEECSCCCSSCEEEECT
T ss_pred eEEEEecCCE-EEEEecccccccccCCCCeEEEEEEeCCCCcEEeCc----------------ccCCCCCCccccccCCC
Confidence 667788 776 777776542 5788998877643210 00112333445678889
Q ss_pred CCCEEEEEEC-CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CC-----ceEEEEE-cCCceeE
Q 001319 417 DGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD-----KLIKVWE-LSGRKLF 488 (1101)
Q Consensus 417 dg~~las~~~-d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d-----~~v~iwd-~~~~~~~ 488 (1101)
+|+.+++|+. +..+.+||..+++-.. ...+... ..-.+++..++|+ +++.|+ .+ ..+.+|| .+++-.
T Consensus 253 ~g~lyv~GG~~~~~v~~yd~~t~~W~~-~~~~~~~-R~~~s~~~~~dg~--iyv~GG~~~~~~~~~~~e~yd~~t~~W~- 327 (656)
T 1k3i_A 253 NGQIVVTGGNDAKKTSLYDSSSDSWIP-GPDMQVA-RGYQSSATMSDGR--VFTIGGSWSGGVFEKNGEVYSPSSKTWT- 327 (656)
T ss_dssp TSCEEEECSSSTTCEEEEEGGGTEEEE-CCCCSSC-CSSCEEEECTTSC--EEEECCCCCSSSCCCCEEEEETTTTEEE-
T ss_pred CCCEEEeCCCCCCceEEecCcCCceeE-CCCCCcc-ccccceEEecCCe--EEEEeCcccCCcccccceEeCCCCCcce-
Confidence 9999999984 5589999998764222 1112111 1113455667888 777777 44 5789999 554422
Q ss_pred EeecC-----CcCeEEEecccCCCccEEEEeccCC---------eEEEEecCCCCeeeeccCC---------CCceEEEE
Q 001319 489 NFEGH-----EAPVYSICPHHKENIQFIFSTAIDG---------KIKAWLYDTMGSRVDYDAP---------GHWCTTML 545 (1101)
Q Consensus 489 ~~~~h-----~~~v~~v~~~~~~~~~~l~s~~~d~---------~i~~wd~~~~~~~~~~~~~---------~~~v~~~~ 545 (1101)
.+... ...-...++.. ++...+.++.+| .+..||..+..-....... ...-.++.
T Consensus 328 ~~~~~~~~p~~~~~~~~~~~~--~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~ 405 (656)
T 1k3i_A 328 SLPNAKVNPMLTADKQGLYRS--DNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVM 405 (656)
T ss_dssp EETTSCSGGGCCCCTTGGGTT--TCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEE
T ss_pred eCCCccccccccccccceeec--CCceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEe
Confidence 22100 00000011111 334445554443 5677887765432211111 11234444
Q ss_pred Ec-cCCCEEEEeecCCCC----Cc---eEEEEeCCCCeeEEEe--cccCCcceEEEEEeCCCCEEEEEeCC---------
Q 001319 546 YS-ADGSRLFSCGTSKDG----DS---FLVEWNESEGTIKRTY--AGFRKKSNGVVQFDTTQNHFLAVGED--------- 606 (1101)
Q Consensus 546 ~s-~d~~~l~~~~~~~~~----~~---~i~iwd~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~l~~~~~d--------- 606 (1101)
|. .+++.++.|+..... .. .|.+||..+....... ..........++..|+++.++.||.+
T Consensus 406 ~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~ 485 (656)
T 1k3i_A 406 YDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDST 485 (656)
T ss_dssp EETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCS
T ss_pred ccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCC
Confidence 54 367777777642100 11 6888898877655543 22222223445677899999998854
Q ss_pred --CcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc
Q 001319 607 --SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA 649 (1101)
Q Consensus 607 --g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~ 649 (1101)
..+.+||..+.+....-..........+..+.|+|+.++.|+.
T Consensus 486 ~~~~v~~ydp~t~~W~~~~~~~~~R~~hs~a~ll~dg~v~v~GG~ 530 (656)
T 1k3i_A 486 PVFTPEIYVPEQDTFYKQNPNSIVRVYHSISLLLPDGRVFNGGGG 530 (656)
T ss_dssp BCCCCEEEEGGGTEEEECCCCSSCCCTTEEEEECTTSCEEEEECC
T ss_pred cccceEEEcCCCCceeecCCCCCccccccHhhcCCCcEEEecCCC
Confidence 4689999987765432211111111223456689999999885
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=98.54 E-value=0.0056 Score=74.88 Aligned_cols=571 Identities=12% Similarity=0.096 Sum_probs=295.3
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
...|.+|.-..+|... .|+.+| +..||-..-+... . . -......|.++.-..+| .|-.
T Consensus 21 ~n~V~~I~qD~~G~lW--igT~~G-L~ryDG~~~~~~~--------~-------~---~~~~~~~i~~i~~d~~g-~lWi 78 (758)
T 3ott_A 21 ASVVSCFLQDSEGLIW--IGSNKG-LFSYDGYSTQQHF--------T-------Y---GENNNTRIYCGVIIDNT-YLYM 78 (758)
T ss_dssp CCCEEEEEECTTSCEE--EEESSC-EEEECSSCEEECS--------C-------T---TSTTSSCEEEEEEETTT-EEEE
T ss_pred cceEEEEEECCCCCEE--EEECCC-ccccCCCceEEEE--------c-------c---CCCCCceEEEEEEcCCC-cEEE
Confidence 4579999999999733 345666 5556621111000 0 0 01124578888877766 5566
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee-----cCCcCe
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-----GHEAPV 497 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~-----~h~~~v 497 (1101)
|+.+| +..||..+++.... .......|.++.. .+|. |..++.+ -+..+| .+++ +..+. .....|
T Consensus 79 gT~~G-l~~yd~~~~~f~~~---~~~~~~~i~~i~~-~~g~---lWigt~~-Gl~~~~~~~~~-~~~~~~~~~~l~~~~i 148 (758)
T 3ott_A 79 GTDNG-ILVYNYRADRYEQP---ETDFPTDVRTMAL-QGDT---LWLGALN-GLYTYQLQSRK-LTSFDTRRNGLPNNTI 148 (758)
T ss_dssp EETTE-EEEEETTTTEECCC---SCCCCSCEEEEEE-ETTE---EEEEETT-EEEEEETTTCC-EEEECHHHHCCSCSCE
T ss_pred EeCCC-eEEEeCCCCEEECc---ccCCCceEEEEEe-cCCc---EEEEcCC-cceeEeCCCCe-EEEeccCCCCcCCCeE
Confidence 66666 88999887542221 1112335777754 3554 4444544 678889 4444 33331 123457
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeee-ccC----CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD-YDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~-~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
.++.... +|.+. .++.+ -+..++..+...... ... ....|.++...+++..|..+. ++-+..+|..
T Consensus 149 ~~i~~d~--~g~lW-igt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt-----~~Gl~~~~~~ 219 (758)
T 3ott_A 149 YSIIRTK--DNQIY-VGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGT-----EGYLFQYFPS 219 (758)
T ss_dssp EEEEECT--TCCEE-EEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEE-----EEEEEEEETT
T ss_pred EEEEEcC--CCCEE-EEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEE-----CCCCeEEcCC
Confidence 7776533 44444 45544 466777655433221 111 122478888877776555554 2347889988
Q ss_pred CCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC-----CCCCCCeeEEecCCCEEEEE
Q 001319 573 EGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG-----GLPNLPRLRFSKEGNLLAVT 647 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~-----~~~~v~~v~~s~~g~~l~~~ 647 (1101)
+++..... ......+.++....+|... .|+. +-+.+++..+++......... ....|.++....+|.+. +|
T Consensus 220 ~~~~~~~~-~l~~~~i~~i~~d~~g~lW-igT~-~Gl~~~~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~D~~g~lW-iG 295 (758)
T 3ott_A 220 TGQIKQTE-AFHNNSIKSLALDGNGDLL-AGTD-NGLYVYHNDTTPLQHIIHDSRNIQSLTNNIIWNIFADQEHNIW-LG 295 (758)
T ss_dssp TTEEEEEE-EEEEEEEEEEEECTTCCEE-EEET-TEEEEECCTTSCCEEECCCTTCTTSCSCSCEEEEEECTTCCEE-EE
T ss_pred CCeEEecc-CCCCCeEEEEEEcCCCCEE-EEeC-CceeEEecCCCcEEEEEcCCCCcCcCCcCeEEEEEEcCCCCEE-EE
Confidence 77643321 1112256777777776554 4454 458888877665432221110 11246677766666544 45
Q ss_pred EcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEE
Q 001319 648 TADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRL 727 (1101)
Q Consensus 648 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 727 (1101)
+..| +.++..... .... .......
T Consensus 296 T~~G-l~~~~~~~~---~~~~---------------~~~~~~~------------------------------------- 319 (758)
T 3ott_A 296 TDYG-ISLSRYNSA---LQFI---------------PISQITG------------------------------------- 319 (758)
T ss_dssp ESSS-EEEECCCC----CEEE---------------EHHHHSC-------------------------------------
T ss_pred eCCc-ccccccCCc---eeEE---------------ecccCCC-------------------------------------
Confidence 5555 443321110 0000 0000000
Q ss_pred EEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCE
Q 001319 728 VTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAV 807 (1101)
Q Consensus 728 ~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 807 (1101)
......|.++....+|. +..++.+| +..++....... ....+..... ...-....|
T Consensus 320 ------~~~~~~v~~i~~D~~g~-lWiGt~~G-l~~~~~~~~~~~---------~~~~~~~~~~-------~~~l~~~~v 375 (758)
T 3ott_A 320 ------TGDGNQFYSLFRDSKGF-YWFGGANG-LIRFTDPAGERH---------DAIWYRMGDK-------TYPLSHNRI 375 (758)
T ss_dssp ------SCCCCBEEEEEECTTCC-EEEEETTE-EEEESCTTSSCC---------CCEEECTTCS-------SSCCSCSCE
T ss_pred ------CCCCceEEEEEEcCCCC-EEEeeCCc-ceeecccccccc---------eeEEeccCCc-------CCCCCCCce
Confidence 01233566676666776 44444555 333332110000 0000000000 000033568
Q ss_pred eEEEecCCCCeEEEEcCCeEEEEECCCceEEEEee-C-----CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec----
Q 001319 808 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFM-S-----PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV---- 877 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~-~-----~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~---- 877 (1101)
.++....+|.+-+.. ++.+..||..+++...... . ....|.++...+ ++. |-+|+..+-+.+++..+
T Consensus 376 ~~i~~d~~g~lWigt-~~GL~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~-~g~-lWigT~~~Gl~~~~~~~~~~~ 452 (758)
T 3ott_A 376 RHIYEDKEQQLWIAT-DGSINRYDYATRQFIHYNIVDNTGTYNTNWTYYIFEDT-AGQ-LWISTCLGGIFVVDKHKLMQS 452 (758)
T ss_dssp EEEEECTTSCEEEEE-TTEEEEEETTTTEEEEEEEECCC--CBSSSEEEEEECT-TSE-EEEEESSSCEEEEEHHHHHHC
T ss_pred EEEEECCCCCEEEEe-CCcHhhcCcCCCcEEEeecCCCcCCCCCceEEEEEEcC-CCC-EEEEECCCceEEEcccccccc
Confidence 899988888866544 5679999998876543221 1 123577887766 555 55677666788888653
Q ss_pred --ceEE--Eeec---c-CCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC-CCCcceEEEcCCC
Q 001319 878 --DEVK--SKLK---G-HQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT-PTGDTRVQFNADQ 948 (1101)
Q Consensus 878 --~~~~--~~~~---~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~d~ 948 (1101)
.... ..+. + ....|.++...++|...+.++..+-|..+|..+++... .. ..... ...+.++....+|
T Consensus 453 ~~~~~~~~~~~~~~~~l~~~~i~~i~~d~~g~lWi~~~t~~Gl~~~d~~~~~~~~---~~-~~~~~~~~~~~~i~~d~~g 528 (758)
T 3ott_A 453 TSGQYIAEQNYSVHNGLSGMFINQIIPDNEGNVWVLLYNNKGIDKINPRTREVTK---LF-ADELTGEKSPNYLLCDEDG 528 (758)
T ss_dssp CSSEEECSEEECGGGTCSCSCEEEEEECTTSCEEEEETTCSSEEEEETTTTEEEE---EC-TTTSCGGGCEEEEEECTTS
T ss_pred CCcceecccccccccccccceeeeEEEcCCCCEEEEccCCCCcEEEeCCCCceEE---ec-CCCcCCCcccceEEECCCC
Confidence 1111 1111 1 12358999999898877643434458888987754221 11 11111 1346678888888
Q ss_pred CEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcc
Q 001319 949 VRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSV 1028 (1101)
Q Consensus 949 ~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 1028 (1101)
.+.+.+ .+.+..|+..+++... +....-....|.++... +|++.+ ++..| |..+|..+.+....-. +
T Consensus 529 ~lWigt-~~Gl~~~~~~~~~~~~-~~~~gl~~~~i~~i~~~-~g~lWi-~t~~G-l~~~~~~~~~~~~~~~-----~--- 595 (758)
T 3ott_A 529 LLWVGF-HGGVMRINPKDESQQS-ISFGSFSNNEILSMTCV-KNSIWV-STTNG-LWIIDRKTMDARQQNM-----T--- 595 (758)
T ss_dssp CEEEEE-TTEEEEECC--CCCCB-CCCCC---CCEEEEEEE-TTEEEE-EESSC-EEEEETTTCCEEEC-------C---
T ss_pred CEEEEe-cCceEEEecCCCceEE-ecccCCCccceEEEEEC-CCCEEE-ECCCC-eEEEcCCCceeEEecC-----C---
Confidence 887665 4568889877654322 11100114568888764 665444 44555 7888988876543111 0
Q ss_pred cCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCC
Q 001319 1029 LNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSE 1066 (1101)
Q Consensus 1029 ~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~ 1066 (1101)
..... ...+.. ....|..|+.+| +..++...
T Consensus 596 ---~~~~~--~~~~~~-~~G~l~fG~~~G-l~~f~p~~ 626 (758)
T 3ott_A 596 ---NKRFT--SLLFDP-KEDCVYLGGADG-FGISHSNL 626 (758)
T ss_dssp ---CCCCS--EEEEET-TTTEEEEECBSE-EEEEEC--
T ss_pred ---CCcee--eeEEEC-CCCcEEEecCCc-eEEEChhh
Confidence 11111 233333 245566677776 45566654
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.54 E-value=6e-06 Score=82.94 Aligned_cols=186 Identities=11% Similarity=0.053 Sum_probs=129.3
Q ss_pred CCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeE--EEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 804 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTF--LAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~--l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
......+.|+ ++.+..+.+ +|.|+++|+++++.+..+ . ...... +++. ++++.+..-.++.+.+||..+.+.
T Consensus 54 ~~ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~~~~FgeGit~~--g~~Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 54 NAFTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-LGNIFAEGLASD--GERLYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp TCCEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-CTTCCEEEEEEC--SSCEEEEESSSCEEEEEETTTTEE
T ss_pred ccccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-CCCcceeEEEEe--CCEEEEEEccCCEEEEEECCcCcE
Confidence 3445678887 345555555 788999999999998887 3 233333 5554 445666666789999999999999
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeE
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQL 959 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i 959 (1101)
+.++..- ..-..++ +|++.|+.+..++.|.++|..+.+.+....+... +.....+..+.|. +|+..+.. .++.|
T Consensus 129 ~~ti~~~-~eGwGLt--~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~-g~~v~~lNeLe~~-dG~lyanvw~s~~I 203 (268)
T 3nok_A 129 ERTTRYS-GEGWGLC--YWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLR-GQPVELINELECA-NGVIYANIWHSSDV 203 (268)
T ss_dssp EEEEECS-SCCCCEE--EETTEEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTCSEE
T ss_pred EEEEeCC-CceeEEe--cCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCC-CcccccccccEEe-CCEEEEEECCCCeE
Confidence 9988742 3334444 5788888777789999999999887766655431 1111344566766 67655444 37899
Q ss_pred EEEEcCCceeeeEeccC----------CCCCCCEEEEEEccCCCEEEEEe
Q 001319 960 AIYDASKMERIRQWTPQ----------DALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~----------~~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
.+.|..+++.+..+... .....-...|+++|+++.|++.+
T Consensus 204 ~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTG 253 (268)
T 3nok_A 204 LEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTG 253 (268)
T ss_dssp EEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEE
T ss_pred EEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeC
Confidence 99999999998887652 11134678999999877666554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.4e-06 Score=98.88 Aligned_cols=245 Identities=10% Similarity=0.047 Sum_probs=132.8
Q ss_pred cEEEEEEe-cCCceEEEEEeccC----cEEEEecCCC-ceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 346 TVISMDFH-PSHQTLLLVGSSNG----EITLWELAMR-DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 346 ~V~~v~fs-pdg~~llasg~~d~----~i~iwd~~~~-~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
.+...+|| |||++++.+.+.+| .|+++|+.++ +.+.. .+ ......++|+|||+
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~------------------~~---~~~~~~~~WspDg~ 233 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD------------------KV---SGTNGEIVWGPDHT 233 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC------------------CE---EEECSCCEECSSTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc------------------cc---cCceeeEEEecCCC
Confidence 68899999 99997655544333 5999999988 63220 01 11235789999999
Q ss_pred EEEEEECC-----CeEEEEeecCCcccccceeee-cccCcEEEEEEecCCCceEEEEec-CCceEEEEE-cCCc-ee--E
Q 001319 420 YVGVAFTK-----HLIQLYSYAGSNDLRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG-DDKLIKVWE-LSGR-KL--F 488 (1101)
Q Consensus 420 ~las~~~d-----~~i~vwd~~~~~~~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~-~d~~v~iwd-~~~~-~~--~ 488 (1101)
.|+....| ..|.++++.++...... .+. ........+.|+|||+++++.+.. ....|.++| .++. .. .
T Consensus 234 ~l~y~~~d~~~~~~~v~~~~lgt~~~~~~l-v~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~ 312 (751)
T 2xe4_A 234 SLFYVTKDETLRENKVWRHVMGKLQSEDVC-LYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLE 312 (751)
T ss_dssp EEEEEEECTTCCEEEEEEEETTSCGGGCEE-EEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEE
T ss_pred EEEEEEECCCCCCCEEEEEECCCCchhcEE-EEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeE
Confidence 99887765 25888888776432111 222 233456788999999963333322 244688888 4431 22 3
Q ss_pred Eee-cCCcCeEEEecccCCCccEEEEeccC----CeEEEEecCCCCeeee-ccCCCC--ceEEEEEccCCCEEEEeecCC
Q 001319 489 NFE-GHEAPVYSICPHHKENIQFIFSTAID----GKIKAWLYDTMGSRVD-YDAPGH--WCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 489 ~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d----~~i~~wd~~~~~~~~~-~~~~~~--~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
.+. +..+...++.|+. ++.+++....+ ..|..+++.+...... +..+.. .+..+.+ ++..|+.... .
T Consensus 313 ~l~~~~~~~~~s~~~~~--g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~lv~~~~-~ 387 (751)
T 2xe4_A 313 IVRPREKGVRYDVQMHG--TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNYLVVAGR-R 387 (751)
T ss_dssp ESSCCCTTCCEEEEEET--TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSEEEEEEE-E
T ss_pred EeecCCCCceEEEeeee--CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCEEEEEEE-e
Confidence 333 3344555554432 23344444443 2566666654222112 222222 3445554 4566655443 2
Q ss_pred CCCceEEEEeC-------CCCeeEEEecccCCcceEEEEE------eCCCCEEE-EEeC---CCcEEEEECCCCee
Q 001319 561 DGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQF------DTTQNHFL-AVGE---DSQIKFWDMDNVNI 619 (1101)
Q Consensus 561 ~~~~~i~iwd~-------~~~~~~~~~~~~~~~~v~~~~~------~~~~~~l~-~~~~---dg~i~iwd~~~~~~ 619 (1101)
++...|.++++ .+++....+..... ...+.+ +++++.++ +.+. -+.++.+|+.+++.
T Consensus 388 ~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~--~~~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~~ 461 (751)
T 2xe4_A 388 AGLTRIWTMMADSQDGVFKAGTGLREVVMEEP--IFTVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHSR 461 (751)
T ss_dssp TTEEEEEEEECCTTTSCCCTTTCCEECCCCCS--SCEEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCCE
T ss_pred CCEEEEEEEecccccccccCCccceEECCCCc--eeEEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCcE
Confidence 34556777886 34431333322111 222334 34555443 3332 25678888877654
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.51 E-value=3e-05 Score=83.95 Aligned_cols=255 Identities=9% Similarity=0.025 Sum_probs=142.4
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcc--cc-c---cccccCCccEEEEEEccCCC
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP--FQ-A---SIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~--~~-~---~~~~~h~~~v~~~~~spdg~ 419 (1101)
...+++|+++|+ ++.++..++.|..|+..+++... |........ .. . .........+..+++.+++.
T Consensus 20 ~p~~i~~d~~g~-~l~v~~~~~~i~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g 92 (322)
T 2fp8_A 20 APNSFTFDSTNK-GFYTSVQDGRVIKYEGPNSGFVD------FAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN 92 (322)
T ss_dssp CCCCEECCTTCS-SEEEECTTSEEEEECCTTTCEEE------EEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT
T ss_pred CceEEEEcCCCC-EEEEEcCCCeEEEECCCCCceEE------EecccccccccccccccchhccccCCCCceEEEcCCCC
Confidence 467788999987 34567788999999887654321 100000000 00 0 00001123578999998333
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeec-ccCcEEEEEEec-CCCceEEEEecC-----------------CceEEEE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDA-HVGAVNDLAFAY-PNKLLCVVTCGD-----------------DKLIKVW 480 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~-h~~~V~~l~~s~-d~~~~~l~s~~~-----------------d~~v~iw 480 (1101)
.|.++...+.|..+|..+++.........+ .......+++.+ +|. +.++... ++.|..|
T Consensus 93 ~l~v~d~~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~--l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~ 170 (322)
T 2fp8_A 93 QLYIVDCYYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGI--VYFTDVSTLYDDRGVQQIMDTSDKTGRLIKY 170 (322)
T ss_dssp EEEEEETTTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCC--EEEEESCSSCCTTCHHHHHHHTCCCEEEEEE
T ss_pred cEEEEECCCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCE--EEEECCcccccccccceehcccCCCceEEEE
Confidence 455555555688888776542111001111 123578899999 887 4554322 4778889
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEE-EeccCCeEEEEecCCC---CeeeeccCCCCceEEEEEccCCCEEEE
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIF-STAIDGKIKAWLYDTM---GSRVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~-s~~~d~~i~~wd~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
| .+++. ..+.........+++++ +++.|+ +-...+.|.+|++... ........ .. ...+++.++|++.++
T Consensus 171 d~~~~~~-~~~~~~~~~p~gia~~~--dg~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~~-~g-P~gi~~d~~G~l~va 245 (322)
T 2fp8_A 171 DPSTKET-TLLLKELHVPGGAEVSA--DSSFVLVAEFLSHQIVKYWLEGPKKGTAEVLVKI-PN-PGNIKRNADGHFWVS 245 (322)
T ss_dssp ETTTTEE-EEEEEEESCCCEEEECT--TSSEEEEEEGGGTEEEEEESSSTTTTCEEEEEEC-SS-EEEEEECTTSCEEEE
T ss_pred eCCCCEE-EEeccCCccCcceEECC--CCCEEEEEeCCCCeEEEEECCCCcCCccceEEeC-CC-CCCeEECCCCCEEEE
Confidence 9 44543 22222223356788866 556554 4466789999998752 11111112 22 788999999987666
Q ss_pred eecCC------CCCceEEEEeCCCCeeEEEecccCC---cceEEEEEeCCCCEEEEEeCCCcEEEEECCC
Q 001319 556 CGTSK------DGDSFLVEWNESEGTIKRTYAGFRK---KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616 (1101)
Q Consensus 556 ~~~~~------~~~~~i~iwd~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~ 616 (1101)
..... ...+.|..+|.. ++.+..+....+ ..+..+++ .++..+++...++.|.++++..
T Consensus 246 ~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 246 SSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp EEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred ecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 53200 013568888874 777776654432 23555555 3444444444677888888753
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.51 E-value=8.5e-05 Score=79.59 Aligned_cols=225 Identities=14% Similarity=0.071 Sum_probs=137.1
Q ss_pred ccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CCc-eEEEEE-cC
Q 001319 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DDK-LIKVWE-LS 483 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d~-~v~iwd-~~ 483 (1101)
.....++|+|+|+++++-..++.|..||.++.. .. ..........+++.++|+ ++++.. .++ .|..+| .+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~~-~~----~~~~~~~p~gia~~~dG~--l~vad~~~~~~~v~~~d~~~ 104 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGNQ-QI----HATVEGKVSGLAFTSNGD--LVATGWNADSIPVVSLVKSD 104 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCCE-EE----EEECSSEEEEEEECTTSC--EEEEEECTTSCEEEEEECTT
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCce-EE----EEeCCCCceeEEEcCCCc--EEEEeccCCcceEEEEcCCC
Confidence 356789999999977776678899999987632 21 112235688999999998 444443 333 577777 66
Q ss_pred CceeEEeec-CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee----------ccCCCCceEEEEEccCCCE
Q 001319 484 GRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD----------YDAPGHWCTTMLYSADGSR 552 (1101)
Q Consensus 484 ~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~----------~~~~~~~v~~~~~s~d~~~ 552 (1101)
++....... .......++..+ ++..+++-..++.|.++|......... ..........+ ++++++
T Consensus 105 g~~~~~~~~~~~~~~~g~~~~~--~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~ 180 (306)
T 2p4o_A 105 GTVETLLTLPDAIFLNGITPLS--DTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNF 180 (306)
T ss_dssp SCEEEEEECTTCSCEEEEEESS--SSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTE
T ss_pred CeEEEEEeCCCccccCcccccC--CCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCE
Confidence 664322221 122234444322 334455555688888888765322111 01111234555 889888
Q ss_pred EEEeecCCCCCceEEEEeCCC-Cee--EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE--eeccCC
Q 001319 553 LFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT--STDAEG 627 (1101)
Q Consensus 553 l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~ 627 (1101)
|+.+.. ..+.|..+++.. ++. ...+... .....++++++|+.+++....+.|.+++.. ++... .+...
T Consensus 181 lyv~d~---~~~~I~~~~~~~~g~~~~~~~~~~~--~~P~gi~vd~dG~l~va~~~~~~V~~~~~~-G~~~~~~~~~~~- 253 (306)
T 2p4o_A 181 LYVSNT---EKMLLLRIPVDSTDKPGEPEIFVEQ--TNIDDFAFDVEGNLYGATHIYNSVVRIAPD-RSTTIIAQAEQG- 253 (306)
T ss_dssp EEEEET---TTTEEEEEEBCTTSCBCCCEEEEES--CCCSSEEEBTTCCEEEECBTTCCEEEECTT-CCEEEEECGGGT-
T ss_pred EEEEeC---CCCEEEEEEeCCCCCCCccEEEecc--CCCCCeEECCCCCEEEEeCCCCeEEEECCC-CCEEEEeecccc-
Confidence 776654 467899999864 322 1122111 123448899999877776678899999975 55432 23322
Q ss_pred CCCCCCeeEEe---cCCCEEEEEEcC
Q 001319 628 GLPNLPRLRFS---KEGNLLAVTTAD 650 (1101)
Q Consensus 628 ~~~~v~~v~~s---~~g~~l~~~~~d 650 (1101)
.....+++|. |+++.|++++..
T Consensus 254 -~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 254 -VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp -CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred -cCCceEEEEecccCCCCEEEEECCC
Confidence 2356889998 888888877654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.48 E-value=3.3e-05 Score=77.09 Aligned_cols=205 Identities=9% Similarity=0.099 Sum_probs=133.1
Q ss_pred eEEEEeeCCCC--CeeEEEEecCCCCEEEEEeCCC--cEEEEEeecceEEEeeccCCCC-eeEEEEcCCCCEEEEEeCCC
Q 001319 836 KVMTTFMSPPP--ASTFLAFHPQDNNIIAIGTEDS--TIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLNILVSSGADA 910 (1101)
Q Consensus 836 ~~~~~~~~~~~--~i~~l~~s~~~~~~la~g~~dg--~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~~l~s~s~Dg 910 (1101)
+.+.++. |.. -...+.|++ +.++.+.+.+| .|+.+|+.+++.+..+...... -..+++.. ++..+..-.++
T Consensus 10 ~v~~~~p-hd~~~ftqGL~~~~--~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~~-~~ly~ltw~~~ 85 (243)
T 3mbr_X 10 RVVKRYP-HDTTAFTEGLFYLR--GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAWR-DRLIQLTWRNH 85 (243)
T ss_dssp EEEEEEE-CCTTCCEEEEEEET--TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEET-TEEEEEESSSS
T ss_pred EEEEEcC-CCCccccccEEEEC--CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEeC-CEEEEEEeeCC
Confidence 4555553 443 356899985 56666666654 8999999999998877533221 12344432 33444455688
Q ss_pred cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCC--CCCCEEEEE
Q 001319 911 QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA--LSAPISCAV 987 (1101)
Q Consensus 911 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~--h~~~v~~v~ 987 (1101)
.+.+||..+.+.+..+... . ....+.+|+..|.+++ ++.|.++|..+.+.+..+..... .-..+..+.
T Consensus 86 ~v~v~D~~tl~~~~ti~~~-------~--~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe 156 (243)
T 3mbr_X 86 EGFVYDLATLTPRARFRYP-------G--EGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELE 156 (243)
T ss_dssp EEEEEETTTTEEEEEEECS-------S--CCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEE
T ss_pred EEEEEECCcCcEEEEEeCC-------C--CceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeE
Confidence 9999999998877665432 1 1234446677777654 78899999999998888776321 013455666
Q ss_pred EccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCccc-CCCCccceEEEEEecCCCCEEEEEE
Q 001319 988 YSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVL-NGSQTVYPLVVAAHPLEPNQFAIGL 1054 (1101)
Q Consensus 988 ~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~l~~~p~d~~~l~s~~ 1054 (1101)
+. +|+..+..-.+..|.+.|..+|+.+..+......+.... .+....-..+++|+|..+++++||=
T Consensus 157 ~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTGK 223 (243)
T 3mbr_X 157 WV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTGK 223 (243)
T ss_dssp EE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEET
T ss_pred Ee-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEECC
Confidence 65 777555555688999999999999999986543322100 0112224568999996566666663
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.47 E-value=1.7e-05 Score=79.78 Aligned_cols=181 Identities=7% Similarity=0.026 Sum_probs=125.9
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
....+.|+ ++.+..+.+.+|.|+++|+++++.++.. +.. ........++++. +.+..-.++.+.++| .+.+.
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~--l~~---~~FgeGit~~g~~-Ly~ltw~~~~v~V~D~~Tl~~ 128 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME--RLG---NIFAEGLASDGER-LYQLTWTEGLLFTWSGMPPQR 128 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE--ECT---TCCEEEEEECSSC-EEEEESSSCEEEEEETTTTEE
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE--CCC---CcceeEEEEeCCE-EEEEEccCCEEEEEECCcCcE
Confidence 45678887 4666677778889999999999987754 322 2333233445665 445566789999999 89999
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC--C---ceEEEEEccCCCEEEEeecCCC
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--H---WCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~---~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
+.++... ..-..+++ +++.|+.+..++.|.++|..+.+....+.... . .++.+.|. +|+.. +...
T Consensus 129 ~~ti~~~-~eGwGLt~----Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~ly-anvw--- 198 (268)
T 3nok_A 129 ERTTRYS-GEGWGLCY----WNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIY-ANIW--- 198 (268)
T ss_dssp EEEEECS-SCCCCEEE----ETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEE-EEET---
T ss_pred EEEEeCC-CceeEEec----CCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEE-EEEC---
Confidence 9888753 23344543 45677777778999999999888776554422 2 34567776 77544 4433
Q ss_pred CCceEEEEeCCCCeeEEEeccc------------CCcceEEEEEeCCCCEEEEEeC
Q 001319 562 GDSFLVEWNESEGTIKRTYAGF------------RKKSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~------------~~~~v~~~~~~~~~~~l~~~~~ 605 (1101)
....|.+.|..+++.+..+... .....+.++++|+++.|++.+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK 254 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGK 254 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEET
T ss_pred CCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCC
Confidence 3668999999999998887642 1235678999998887777664
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.46 E-value=0.00032 Score=76.42 Aligned_cols=247 Identities=13% Similarity=0.015 Sum_probs=151.9
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
+..+|.+..+++ +|+++ ....|+..++....... +......+..++|++.+..|...
T Consensus 34 d~~~C~~~~~~~-~ll~~--~~~~I~~i~~~g~~~~~--------------------~~~~~~~~~~l~~d~~~~~ly~~ 90 (349)
T 3v64_C 34 DRRSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWS 90 (349)
T ss_dssp TSSCEEESSSCC-EEEEE--CBSCEEEECTTSCCEEE--------------------EECSCSCEEEEEEETTTTEEEEE
T ss_pred CCCcccccccCc-eeEee--cccceEEEeCCCCeeEE--------------------eecCCCceEEEEEeccccEEEEE
Confidence 345677767754 35443 45568888876543321 11123458899999877666655
Q ss_pred E-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEec
Q 001319 425 F-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICP 502 (1101)
Q Consensus 425 ~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~ 502 (1101)
. ..+.|..++++++.... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ..-.....+++
T Consensus 91 D~~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iav 166 (349)
T 3v64_C 91 DVTLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIAL 166 (349)
T ss_dssp ETTTTEEEEEETTSCSCEE---EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEE
T ss_pred eccCCceEEEecCCCCceE---EEeCCCCCccEEEEecCCCe-EEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEE
Confidence 4 56789999988764322 12222344678999986664 5566666789999997666544443 33355788888
Q ss_pred ccCCCccEEEEeccC-CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 503 HHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 503 ~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
.|. ++.+.++-... +.|...+++.................+++++++..|..+-. +.+.|..+|+........+.
T Consensus 167 dp~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~---~~~~I~~~~~dG~~~~~~~~ 242 (349)
T 3v64_C 167 HPM-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVIS 242 (349)
T ss_dssp ETT-TTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEC
T ss_pred ecC-cCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEEC---CCCEEEEEeCCCCceEEEEe
Confidence 764 33445554445 78888887754444333334456789999998887776643 46789999987543333333
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
.... ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 243 ~~~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 243 QGLP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp SSCS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CCCC-CceEEEEE-CCEEEEecCCCCeEEEEEccCCCccEEec
Confidence 2222 34556663 33344444466778888766666555543
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.44 E-value=2e-05 Score=78.70 Aligned_cols=189 Identities=11% Similarity=0.113 Sum_probs=129.3
Q ss_pred CCCCEeEEEecCCCCeEEEEc-C--CeEEEEECCCceEEEEeeCCCCC-eeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 803 LEEAVPCIALSKNDSYVMSAT-G--GKISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~-d--g~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
.......+.|+. +.+..+.+ + ..|+.+|+.+++.+..+...... --.+++. ++++.+..-.++.+.+||..+.
T Consensus 19 ~~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl 95 (243)
T 3mbr_X 19 TTAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATL 95 (243)
T ss_dssp TTCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTT
T ss_pred CccccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcC
Confidence 344566889986 55555544 3 47999999999999988754322 1234443 4556666667899999999999
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCC
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HET 957 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~ 957 (1101)
+.+.++... ..-..++ +|++.|+.+..++.|.++|..+.+.+....+... +.....+..+.+. +|+..+.. .+.
T Consensus 96 ~~~~ti~~~-~~Gwglt--~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~-g~~~~~lNeLe~~-~G~lyanvw~s~ 170 (243)
T 3mbr_X 96 TPRARFRYP-GEGWALT--SDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAG-GRPLDNLNELEWV-NGELLANVWLTS 170 (243)
T ss_dssp EEEEEEECS-SCCCEEE--ECSSCEEEECSSSEEEEECTTTCCEEEEEECEET-TEECCCEEEEEEE-TTEEEEEETTTT
T ss_pred cEEEEEeCC-CCceEEe--eCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccC-CcccccceeeEEe-CCEEEEEECCCC
Confidence 999988743 2334444 5677777666788999999999887766555431 1111334455555 66655444 478
Q ss_pred eEEEEEcCCceeeeEeccCC----------CCCCCEEEEEEccCCCEEEEEe
Q 001319 958 QLAIYDASKMERIRQWTPQD----------ALSAPISCAVYSCNSQLVFATF 999 (1101)
Q Consensus 958 ~i~v~d~~~~~~~~~~~~~~----------~h~~~v~~v~~s~dg~~l~s~~ 999 (1101)
.|.+.|..+++.+..+.... ....-...|+++|+++.|++.+
T Consensus 171 ~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 171 RIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp EEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred eEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 99999999999988876431 1134678999999888777665
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.44 E-value=9.6e-05 Score=79.19 Aligned_cols=237 Identities=9% Similarity=0.019 Sum_probs=140.1
Q ss_pred CCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEE
Q 001319 333 LPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRV 412 (1101)
Q Consensus 333 ~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~ 412 (1101)
.+.+....+.-......++|+|+|+ |+++...++.|..||..+. ... . + .....+..+
T Consensus 20 ~~~~~~~~~p~~~~pegia~~~~g~-lyv~d~~~~~I~~~d~~g~-~~~-----~--------------~-~~~~~p~gi 77 (306)
T 2p4o_A 20 APAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGN-QQI-----H--------------A-TVEGKVSGL 77 (306)
T ss_dssp CCEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCC-EEE-----E--------------E-ECSSEEEEE
T ss_pred CCceEeEeCCCCCCcceEEECCCCC-EEEEeCCCCeEEEECCCCc-eEE-----E--------------E-eCCCCceeE
Confidence 3444555565456789999999998 6666667889999987653 211 0 1 112468899
Q ss_pred EEccCCCEEEEEECC-C-eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc-eeE
Q 001319 413 AWSPDGNYVGVAFTK-H-LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR-KLF 488 (1101)
Q Consensus 413 ~~spdg~~las~~~d-~-~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~-~~~ 488 (1101)
+++++|+++++.... + .|..+|..+++... +..+ ........++..+++. .+++...++.|.++| ..++ .+.
T Consensus 78 a~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~-~~~~-~~~~~~~g~~~~~~~~--~~v~d~~~g~i~~~d~~~~~~~v~ 153 (306)
T 2p4o_A 78 AFTSNGDLVATGWNADSIPVVSLVKSDGTVET-LLTL-PDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIW 153 (306)
T ss_dssp EECTTSCEEEEEECTTSCEEEEEECTTSCEEE-EEEC-TTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEE
T ss_pred EEcCCCcEEEEeccCCcceEEEEcCCCCeEEE-EEeC-CCccccCcccccCCCc--EEEEECCCCeEEEEeCCCCcEeEE
Confidence 999999966655433 2 46667777765322 1111 1122334555555554 566666688899999 4432 121
Q ss_pred Eee---------cCCcCeEEEecccCCCcc-EEEEeccCCeEEEEecCC-CCe--eeeccCCCCceEEEEEccCCCEEEE
Q 001319 489 NFE---------GHEAPVYSICPHHKENIQ-FIFSTAIDGKIKAWLYDT-MGS--RVDYDAPGHWCTTMLYSADGSRLFS 555 (1101)
Q Consensus 489 ~~~---------~h~~~v~~v~~~~~~~~~-~l~s~~~d~~i~~wd~~~-~~~--~~~~~~~~~~v~~~~~s~d~~~l~~ 555 (1101)
... +.-.....+ ++ ++. +.++-...+.|..++++. +.. ...+. .......++++++|++.++
T Consensus 154 ~~~~~~~~~~~~~~~~~pngi--s~--dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~-~~~~P~gi~vd~dG~l~va 228 (306)
T 2p4o_A 154 LEHPMLARSNSESVFPAANGL--KR--FGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGA 228 (306)
T ss_dssp EECGGGSCSSTTCCSCSEEEE--EE--ETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEE
T ss_pred EECCccccccccCCCCcCCCc--Cc--CCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEe-ccCCCCCeEECCCCCEEEE
Confidence 111 111234445 34 344 445556678999999875 211 11111 1123567899999987666
Q ss_pred eecCCCCCceEEEEeCCCCeeEE--EecccCCcceEEEEEe---CCCCEEEEEeCC
Q 001319 556 CGTSKDGDSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFD---TTQNHFLAVGED 606 (1101)
Q Consensus 556 ~~~~~~~~~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~---~~~~~l~~~~~d 606 (1101)
.. +.+.|.++|.. ++... .+... .....+++|. |+++.|+++...
T Consensus 229 ~~----~~~~V~~~~~~-G~~~~~~~~~~~-~~~p~~~a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 229 TH----IYNSVVRIAPD-RSTTIIAQAEQG-VIGSTAVAFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp CB----TTCCEEEECTT-CCEEEEECGGGT-CTTEEEEEECCSTTTTTEEEEEECT
T ss_pred eC----CCCeEEEECCC-CCEEEEeecccc-cCCceEEEEecccCCCCEEEEECCC
Confidence 54 36789999975 55533 22222 1257789998 788887776643
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.40 E-value=0.00028 Score=78.13 Aligned_cols=245 Identities=13% Similarity=0.014 Sum_probs=150.7
Q ss_pred EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-
Q 001319 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF- 425 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~- 425 (1101)
-.|.+..+.+ +|+++ ....|+..++..+.... +......+..++|.+.+..|....
T Consensus 79 ~~C~~~~~~~-~l~~~--~~~~I~~i~~~~~~~~~--------------------~~~~~~~~~gl~~d~~~~~ly~~D~ 135 (386)
T 3v65_B 79 RSCKALGPEP-VLLFA--NRIDIRQVLPHRSEYTL--------------------LLNNLENAIALDFHHRRELVFWSDV 135 (386)
T ss_dssp SCEEECSSCC-EEEEE--CBSCEEEECTTSCCCEE--------------------EECSCSCEEEEEEETTTTEEEEEET
T ss_pred CeECCccccc-eeEee--cCccceeeccCCCcEEE--------------------EecCCCccEEEEEecCCCeEEEEeC
Confidence 4456666644 35443 45678888887654321 112234688999998766666554
Q ss_pred CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEeccc
Q 001319 426 TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHH 504 (1101)
Q Consensus 426 ~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~~~ 504 (1101)
..+.|..++++++.... .+.........+++.+.+.. ++++-...+.|.+.+.+|.....+. ........+++.|
T Consensus 136 ~~~~I~r~~~~g~~~~~---~~~~~~~~p~glavd~~~g~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp 211 (386)
T 3v65_B 136 TLDRILRANLNGSNVEE---VVSTGLESPGGLAVDWVHDK-LYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHP 211 (386)
T ss_dssp TTTEEEEEETTSCCEEE---EECSSCSCCCCEEEETTTTE-EEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEET
T ss_pred CCCcEEEEecCCCCcEE---EEeCCCCCccEEEEEeCCCe-EEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEc
Confidence 56789999988764222 12222334577899987664 5566666788988886666544443 2335678888876
Q ss_pred CCCccEEEEeccC-CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc
Q 001319 505 KENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF 583 (1101)
Q Consensus 505 ~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~ 583 (1101)
. ++.+.++-... +.|...+++.................++++|++..|..+-. +.+.|..+|+........+...
T Consensus 212 ~-~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~ 287 (386)
T 3v65_B 212 M-EGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDA---KHHVIERANLDGSHRKAVISQG 287 (386)
T ss_dssp T-TTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEET---TTTEEEEECTTSCSCEEEECSS
T ss_pred C-CCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEEC---CCCEEEEEeCCCCeeEEEEECC
Confidence 4 33444444444 67888887765444444444456789999988887776643 4678999998754433333322
Q ss_pred CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 584 RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 584 ~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
.. ....+++. .+..+++-...+.|..++..+++....+.
T Consensus 288 ~~-~P~giav~-~~~ly~td~~~~~V~~~~~~~G~~~~~i~ 326 (386)
T 3v65_B 288 LP-HPFAITVF-EDSLYWTDWHTKSINSANKFTGKNQEIIR 326 (386)
T ss_dssp CS-SEEEEEEE-TTEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred CC-CceEEEEE-CCEEEEeeCCCCeEEEEECCCCcceEEEc
Confidence 22 34556673 33444444567788888876776665554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.36 E-value=0.00037 Score=74.78 Aligned_cols=229 Identities=8% Similarity=0.022 Sum_probs=144.7
Q ss_pred eEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec----ceEEEeeccCCCCeeE
Q 001319 818 YVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV----DEVKSKLKGHQKRITG 893 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~----~~~~~~~~~h~~~V~~ 893 (1101)
+|+.+....|+..|+.+.+....+. ....+..++|++.++.++++-..++.|+.+++.. ......+.........
T Consensus 3 ~ll~~~~~~I~~i~~~~~~~~~~~~-~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~g 81 (316)
T 1ijq_A 3 YLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDG 81 (316)
T ss_dssp EEEEECBSSEEEEETTSCCCEEEEC-SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCE
T ss_pred EEEEECCCeEEEEECCCcceEehhc-CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCE
Confidence 4666666779999998876655544 3456789999984455666666678999999876 2222223323345688
Q ss_pred EEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C-CeEEEEEcCCcee
Q 001319 894 LAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIYDASKMER 969 (1101)
Q Consensus 894 l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d-~~i~v~d~~~~~~ 969 (1101)
+++.+.+. ..++-...+.|.+.+....... . ... .. ......++++|.+..|..++ . +.|..++.+...
T Consensus 82 lavd~~~~~ly~~d~~~~~I~~~~~~g~~~~-~-~~~-~~---~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~- 154 (316)
T 1ijq_A 82 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRK-T-LFR-EN---GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD- 154 (316)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEE-E-EEE-CT---TCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCC-
T ss_pred EEEeecCCeEEEEECCCCEEEEEeCCCCceE-E-EEE-CC---CCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCC-
Confidence 99987555 4455567788999998764321 1 111 11 14568899999777666654 2 678888876433
Q ss_pred eeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC
Q 001319 970 IRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN 1048 (1101)
Q Consensus 970 ~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~ 1048 (1101)
...+.... -.....+++++++..|+.+. ..+.|..+|++.......... ......+.+++.. ++.
T Consensus 155 ~~~~~~~~--~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~----------~~~~~~P~giav~--~~~ 220 (316)
T 1ijq_A 155 IYSLVTEN--IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED----------EKRLAHPFSLAVF--EDK 220 (316)
T ss_dssp EEEEECSS--CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEEC----------TTTTSSEEEEEEE--TTE
T ss_pred eEEEEECC--CCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeec----------CCccCCcEEEEEE--CCE
Confidence 22222111 45688999999877776554 567899999975433222221 1112245567664 367
Q ss_pred EEEEEECCCeEEEEeCCCCC
Q 001319 1049 QFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1049 ~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
++++-...+.|..++..+++
T Consensus 221 ly~~d~~~~~V~~~~~~~g~ 240 (316)
T 1ijq_A 221 VFWTDIINEAIFSANRLTGS 240 (316)
T ss_dssp EEEEETTTTEEEEEETTTCC
T ss_pred EEEEECCCCeEEEEeCCCCc
Confidence 77777778899999987776
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00035 Score=76.04 Aligned_cols=237 Identities=10% Similarity=0.029 Sum_probs=151.6
Q ss_pred EeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc
Q 001319 807 VPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
.+|.+..+ ..+|+.+....|+..++........+.. ...+..++|++.++.++.+-...+.|+.+++..+.....+..
T Consensus 36 ~~C~~~~~-~~~ll~~~~~~I~~i~~~g~~~~~~~~~-~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~ 113 (349)
T 3v64_C 36 RSCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVST 113 (349)
T ss_dssp SCEEESSS-CCEEEEECBSCEEEECTTSCCEEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS
T ss_pred Cccccccc-CceeEeecccceEEEeCCCCeeEEeecC-CCceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeC
Confidence 45666666 3456666666788888876655444443 445889999984555666656778899999876654333333
Q ss_pred CCCCeeEEEEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C-CeEEEE
Q 001319 887 HQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIY 962 (1101)
Q Consensus 887 h~~~V~~l~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d-~~i~v~ 962 (1101)
.......+++.+.+. +.++-...+.|.+.+++..... .+. ... ......++++|.+..|..++ . +.|..+
T Consensus 114 ~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~---~l~--~~~-l~~P~~iavdp~~g~ly~td~~~~~~I~r~ 187 (349)
T 3v64_C 114 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK---VLL--WQS-LEKPRAIALHPMEGTIYWTDWGNTPRIEAS 187 (349)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE---EEE--CTT-CSCEEEEEEETTTTEEEEEECSSSCEEEEE
T ss_pred CCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceE---EEE--eCC-CCCcceEEEecCcCeEEEeccCCCCEEEEE
Confidence 334567899987555 4455556788999998764321 111 111 14568899999777777654 3 678888
Q ss_pred EcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEE
Q 001319 963 DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVA 1041 (1101)
Q Consensus 963 d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~ 1041 (1101)
+++........... ......+++++++..|..+. ..+.|..+|++.......+. .....+.+++
T Consensus 188 ~~dG~~~~~~~~~~---~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~------------~~~~~P~gia 252 (349)
T 3v64_C 188 SMDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------QGLPHPFAIT 252 (349)
T ss_dssp ETTSCSCEESCCSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SSCSSEEEEE
T ss_pred eCCCCCcEEEEECC---CCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEe------------CCCCCceEEE
Confidence 88754332222211 45678999998777666554 56789999987543332222 1122455677
Q ss_pred EecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1042 AHPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1042 ~~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.. ++.++++-...+.|...+..+++
T Consensus 253 v~--~~~ly~td~~~~~V~~~~~~~G~ 277 (349)
T 3v64_C 253 VF--EDSLYWTDWHTKSINSANKFTGK 277 (349)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCC
T ss_pred EE--CCEEEEecCCCCeEEEEEccCCC
Confidence 63 46777777778889999876766
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.33 E-value=0.00035 Score=70.92 Aligned_cols=202 Identities=9% Similarity=0.050 Sum_probs=130.1
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
-.+.+..++|+|+++.|+|+...++.|...|.. ++.+...+ +.+ ....-.|++.+++.+++
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~-----------------l~g-~~D~EGIa~~~~g~~~v 85 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIP-----------------LDF-VKDLETIEYIGDNQFVI 85 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEE-----------------CSS-CSSEEEEEECSTTEEEE
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEe-----------------cCC-CCChHHeEEeCCCEEEE
Confidence 346899999999988788888888999999987 66554211 222 25678889999998777
Q ss_pred EEECCCeEEEEeecCCcccccceeee------cccCcEEEEEEecCCCceEEEEecCCceEEEEE--cCCceeEEee---
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQID------AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE--LSGRKLFNFE--- 491 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~------~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd--~~~~~~~~~~--- 491 (1101)
+.-.++.+.++++.....+....... ........++|+|++++++++.-..-..|..|+ ..+..+..+.
T Consensus 86 s~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~ 165 (255)
T 3qqz_A 86 SDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKA 165 (255)
T ss_dssp EETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHH
T ss_pred EECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchh
Confidence 76667889999887654322111111 234457899999999863333332222566666 2222222221
Q ss_pred ----cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC---------CceEEEEEccCCCEEEEeec
Q 001319 492 ----GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG---------HWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 492 ----~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~---------~~v~~~~~s~d~~~l~~~~~ 558 (1101)
.+...+.+++++|. .+.+++.....+.+..+|.... ....+.... .....|+|.++|+..+++ .
T Consensus 166 ~~~~~~~~d~S~l~~dp~-tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~lyIvs-E 242 (255)
T 3qqz_A 166 LQRQFTLDDVSGAEFNQQ-KNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEGVAMDASGNIYIVS-E 242 (255)
T ss_dssp HHHTCCSSCCCEEEEETT-TTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEEEEECTTCCEEEEE-T
T ss_pred hccccccCCceeEEEcCC-CCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCeeEECCCCCEEEEc-C
Confidence 13345788999886 4577788888889999986643 333332221 256899999999866664 2
Q ss_pred CCCCCceEEEEe
Q 001319 559 SKDGDSFLVEWN 570 (1101)
Q Consensus 559 ~~~~~~~i~iwd 570 (1101)
.+.++.+.
T Consensus 243 ----~n~~y~f~ 250 (255)
T 3qqz_A 243 ----PNRFYRFT 250 (255)
T ss_dssp ----TTEEEEEE
T ss_pred ----CceEEEEE
Confidence 44555554
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=0.00097 Score=71.49 Aligned_cols=231 Identities=11% Similarity=-0.039 Sum_probs=138.8
Q ss_pred ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-CCCeEEEEeecCC---cc
Q 001319 365 SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGS---ND 440 (1101)
Q Consensus 365 ~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd~~~~---~~ 440 (1101)
....|+..|+.+.+... +......+..++|++++..|..+. .++.|..+++.+. ..
T Consensus 8 ~~~~I~~i~~~~~~~~~--------------------~~~~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~ 67 (316)
T 1ijq_A 8 NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS 67 (316)
T ss_dssp CBSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------
T ss_pred CCCeEEEEECCCcceEe--------------------hhcCCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcc
Confidence 44678999988765332 111234678999999776666554 4688999998862 22
Q ss_pred cccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEecccCCCccEEEEeccC-C
Q 001319 441 LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTAID-G 518 (1101)
Q Consensus 441 ~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~d-~ 518 (1101)
... .+.........+++.+.+.. +.++-...+.|.+.+.+|.....+. ........+++.|. ++.++++.... +
T Consensus 68 ~~~--~~~~~~~~p~glavd~~~~~-ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~-~g~ly~~d~~~~~ 143 (316)
T 1ijq_A 68 YDT--VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTDWGTPA 143 (316)
T ss_dssp CEE--EECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEECSSSC
T ss_pred cEE--EEeCCCCCcCEEEEeecCCe-EEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCC-CCEEEEEccCCCC
Confidence 221 12222245678999976654 5566667889999997676554443 23356788888664 23344443333 6
Q ss_pred eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEeccc-CCcceEEEEEeCCC
Q 001319 519 KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQ 597 (1101)
Q Consensus 519 ~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~ 597 (1101)
.|...+++.................+++++++..|..+-. +.+.|..+|............. .......+++. .+
T Consensus 144 ~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~---~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~ 219 (316)
T 1ijq_A 144 KIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-ED 219 (316)
T ss_dssp EEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TT
T ss_pred eEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEEC---CCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CC
Confidence 8888887654433333334456889999998888777643 4678999998743332222211 11134456664 34
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEee
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1101)
..+++-...+.|..++..+++.+..+
T Consensus 220 ~ly~~d~~~~~V~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 220 KVFWTDIINEAIFSANRLTGSDVNLL 245 (316)
T ss_dssp EEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred EEEEEECCCCeEEEEeCCCCcceEEE
Confidence 44444456778888887766655444
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.32 E-value=0.0023 Score=68.90 Aligned_cols=279 Identities=10% Similarity=0.040 Sum_probs=149.8
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
....+.+|+|.+++. ++|+| .+|.| +...+.|+. |.... .........+.+|+|+| +..++
T Consensus 34 ~~~~~~~v~~~~~~~-~~~~G-~~g~i-~~s~DgG~t--------W~~~~-------~~~~~~~~~~~~i~~~~-~~~~~ 94 (327)
T 2xbg_A 34 TTATILDMSFIDRHH-GWLVG-VNATL-METRDGGQT--------WEPRT-------LVLDHSDYRFNSVSFQG-NEGWI 94 (327)
T ss_dssp CSSCEEEEEESSSSC-EEEEE-TTTEE-EEESSTTSS--------CEECC-------CCCSCCCCEEEEEEEET-TEEEE
T ss_pred CCCcEEEEEECCCCc-EEEEc-CCCeE-EEeCCCCCC--------CeECC-------CCCCCCCccEEEEEecC-CeEEE
Confidence 345799999988776 55655 56654 333343431 11000 00112345788999986 44444
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCcee-EEeecCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL-FNFEGHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~-~~~~~h~~~v~~v~ 501 (1101)
++.++.|.. ..+.|+..........+.+.+..+.+.+++. +++.+. ++.|..-+..|+.- ....++...+..++
T Consensus 95 -~g~~g~i~~-S~DgG~tW~~~~~~~~~~~~~~~i~~~~~~~--~~~~~~-~g~v~~S~DgG~tW~~~~~~~~~~~~~~~ 169 (327)
T 2xbg_A 95 -VGEPPIMLH-TTDGGQSWSQIPLDPKLPGSPRLIKALGNGS--AEMITN-VGAIYRTKDSGKNWQALVQEAIGVMRNLN 169 (327)
T ss_dssp -EEETTEEEE-ESSTTSSCEECCCCTTCSSCEEEEEEEETTE--EEEEET-TCCEEEESSTTSSEEEEECSCCCCEEEEE
T ss_pred -EECCCeEEE-ECCCCCCceECccccCCCCCeEEEEEECCCC--EEEEeC-CccEEEEcCCCCCCEEeecCCCcceEEEE
Confidence 445664433 3444554332211112345678888887776 555554 55543222223322 22234556788888
Q ss_pred cccCCCccEEEEeccCCeEEEEec--CCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLY--DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~--~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1101)
+.+ ++.+++.+...+..+-+|- .+-+.. -......+..+.+.++++.++.+. ++.+++.+...++.-..
T Consensus 170 ~~~--~~~~~~~g~~G~~~~S~d~gG~tW~~~--~~~~~~~~~~~~~~~~g~~~~~~~-----~G~~~~s~~D~G~tW~~ 240 (327)
T 2xbg_A 170 RSP--SGEYVAVSSRGSFYSTWEPGQTAWEPH--NRTTSRRLHNMGFTPDGRLWMIVN-----GGKIAFSDPDNSENWGE 240 (327)
T ss_dssp ECT--TSCEEEEETTSSEEEEECTTCSSCEEE--ECCSSSCEEEEEECTTSCEEEEET-----TTEEEEEETTEEEEECC
T ss_pred EcC--CCcEEEEECCCcEEEEeCCCCCceeEC--CCCCCCccceeEECCCCCEEEEeC-----CceEEEecCCCCCeeEe
Confidence 866 4566666654444444442 111111 122345688899999998776653 56676664333433322
Q ss_pred eccc---CCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-CCCCCCCeeEEecCCCEEEEEEcCCcEEE
Q 001319 580 YAGF---RKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-GGLPNLPRLRFSKEGNLLAVTTADNGFKI 655 (1101)
Q Consensus 580 ~~~~---~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~v~~s~~g~~l~~~~~d~~i~i 655 (1101)
+... ....+..+.+.+++..+++ +.+|.| .+....++.-..+... .....+.++.|.+++ .+++++.+|.|.-
T Consensus 241 ~~~~~~~~~~~~~~v~~~~~~~~~~~-g~~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~ 317 (327)
T 2xbg_A 241 LLSPLRRNSVGFLDLAYRTPNEVWLA-GGAGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR 317 (327)
T ss_dssp CBCTTSSCCSCEEEEEESSSSCEEEE-ESTTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred ccCCcccCCcceEEEEecCCCEEEEE-eCCCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence 2211 1124677888887665554 456766 3455556554444321 112357889887655 4666677887766
Q ss_pred EE
Q 001319 656 LA 657 (1101)
Q Consensus 656 wd 657 (1101)
++
T Consensus 318 ~~ 319 (327)
T 2xbg_A 318 YV 319 (327)
T ss_dssp EC
T ss_pred Ec
Confidence 54
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.31 E-value=0.00024 Score=78.63 Aligned_cols=236 Identities=11% Similarity=0.039 Sum_probs=151.9
Q ss_pred eEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccC
Q 001319 808 PCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
.|.+..+ ..+|+.+....|+.+++........... ...+..++|.+.++.++++-...+.|+.+++..+.....+...
T Consensus 80 ~C~~~~~-~~~l~~~~~~~I~~i~~~~~~~~~~~~~-~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~ 157 (386)
T 3v65_B 80 SCKALGP-EPVLLFANRIDIRQVLPHRSEYTLLLNN-LENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTG 157 (386)
T ss_dssp CEEECSS-CCEEEEECBSCEEEECTTSCCCEEEECS-CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSS
T ss_pred eECCccc-cceeEeecCccceeeccCCCcEEEEecC-CCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCC
Confidence 3555555 4456666667789999877655444443 4568899999845666666667788999998766544444333
Q ss_pred CCCeeEEEEcCCCCEE-EEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C-CeEEEEE
Q 001319 888 QKRITGLAFSTSLNIL-VSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E-TQLAIYD 963 (1101)
Q Consensus 888 ~~~V~~l~~s~d~~~l-~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d-~~i~v~d 963 (1101)
......+++.+.+..| ++-...+.|.+.+++..... ..+ ..+ ......++++|.+..|..++ . +.|..++
T Consensus 158 ~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~--~l~--~~~--l~~P~giavdp~~g~ly~td~~~~~~I~r~~ 231 (386)
T 3v65_B 158 LESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRK--VLL--WQS--LEKPRAIALHPMEGTIYWTDWGNTPRIEASS 231 (386)
T ss_dssp CSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCE--EEE--CSS--CSCEEEEEEETTTTEEEEEECSSSCEEEEEE
T ss_pred CCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceE--Eee--cCC--CCCCcEEEEEcCCCeEEEeccCCCCEEEEEe
Confidence 3456789998765544 55556678888888754321 111 111 14568899999888777754 3 6788888
Q ss_pred cCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEE
Q 001319 964 ASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAA 1042 (1101)
Q Consensus 964 ~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~ 1042 (1101)
.+........... ......|++++++..|+.+ ...+.|..+|++.......+. .....+.+++.
T Consensus 232 ~dG~~~~~~~~~~---~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------~~~~~P~giav 296 (386)
T 3v65_B 232 MDGSGRRIIADTH---LFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVIS------------QGLPHPFAITV 296 (386)
T ss_dssp TTSCSCEEEECSS---CSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEEC------------SSCSSEEEEEE
T ss_pred CCCCCcEEEEECC---CCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEE------------CCCCCceEEEE
Confidence 8754433333222 4557899999877766654 456789999987543332222 11224556776
Q ss_pred ecCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1043 HPLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1043 ~p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
. ++.++++-...+.|..++..+++
T Consensus 297 ~--~~~ly~td~~~~~V~~~~~~~G~ 320 (386)
T 3v65_B 297 F--EDSLYWTDWHTKSINSANKFTGK 320 (386)
T ss_dssp E--TTEEEEEETTTTEEEEEETTTCC
T ss_pred E--CCEEEEeeCCCCeEEEEECCCCc
Confidence 3 46777777788899999976766
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=98.23 E-value=0.00012 Score=87.69 Aligned_cols=118 Identities=9% Similarity=0.146 Sum_probs=75.0
Q ss_pred EEEEcc-CCCEEEEeecCCCC-------CceEEEEeCCCCeeEE--EecccCCcceEEEEEeCCCCEEEEEe-CCCcEEE
Q 001319 543 TMLYSA-DGSRLFSCGTSKDG-------DSFLVEWNESEGTIKR--TYAGFRKKSNGVVQFDTTQNHFLAVG-EDSQIKF 611 (1101)
Q Consensus 543 ~~~~s~-d~~~l~~~~~~~~~-------~~~i~iwd~~~~~~~~--~~~~~~~~~v~~~~~~~~~~~l~~~~-~dg~i~i 611 (1101)
..++.+ +++.++.|+...+. ...+.+||..+++... .+..........+++..+++.++.|| .+..+.+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~ 269 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL 269 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence 456666 88888887753321 1268899998876432 33222222334467788899988888 4568999
Q ss_pred EECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEE-cC-----CcEEEEEcccc
Q 001319 612 WDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT-AD-----NGFKILANAIG 661 (1101)
Q Consensus 612 wd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~-~d-----~~i~iwd~~~~ 661 (1101)
||..+.+....-..... ..-.+++..++|++++.|+ .+ ..+.+||..+.
T Consensus 270 yd~~t~~W~~~~~~~~~-R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~ 324 (656)
T 1k3i_A 270 YDSSSDSWIPGPDMQVA-RGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSK 324 (656)
T ss_dssp EEGGGTEEEECCCCSSC-CSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTT
T ss_pred ecCcCCceeECCCCCcc-ccccceEEecCCeEEEEeCcccCCcccccceEeCCCCC
Confidence 99988765544322221 1123456667999999988 34 46788887654
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00086 Score=74.48 Aligned_cols=230 Identities=9% Similarity=0.009 Sum_probs=148.3
Q ss_pred CeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc----eEEEeeccCCCCee
Q 001319 817 SYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD----EVKSKLKGHQKRIT 892 (1101)
Q Consensus 817 ~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~----~~~~~~~~h~~~V~ 892 (1101)
.+|+.+....|+..++........+. ....+..++|++.++.++.+-...+.|+.+++... .....+........
T Consensus 84 ~~ll~~~~~~I~~i~l~~~~~~~~~~-~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~ 162 (400)
T 3p5b_L 84 AYLFFTNRHEVRKMTLDRSEYTSLIP-NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPD 162 (400)
T ss_dssp CEEEEEETTEEEEECTTSCSCEEEEC-SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEE
T ss_pred ceeEEeccceeEEEccCCcceeEecc-ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcc
Confidence 45666667889999998765554443 35678899999845555555556788999988752 22233333445678
Q ss_pred EEEEcCC-CCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe---CCeEEEEEcCCce
Q 001319 893 GLAFSTS-LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKME 968 (1101)
Q Consensus 893 ~l~~s~d-~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~~i~v~d~~~~~ 968 (1101)
.|++.+. +++.++-...+.|.+.+++....... +. . .......++++|.+..|..++ .+.|...+++...
T Consensus 163 glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l--~~--~--~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~ 236 (400)
T 3p5b_L 163 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTL--FR--E--NGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVD 236 (400)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEECTTTCSEEEE--EE--C--SSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCS
T ss_pred cEEEEecCCceEEEECCCCeEEEEeCCCCceEEE--Ee--C--CCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCc
Confidence 8999874 44555556678899999876432211 11 1 114568899999877777654 3678888887544
Q ss_pred eeeEeccCCCCCCCEEEEEEccCCCEEEEEe-CCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCC
Q 001319 969 RIRQWTPQDALSAPISCAVYSCNSQLVFATF-CDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEP 1047 (1101)
Q Consensus 969 ~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~ 1047 (1101)
........ -.....|++++++..|+.+. ..+.|..+|++.......+.. ...-..+.+++.. ++
T Consensus 237 ~~~~~~~~---l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~----------~~~l~~P~gl~v~--~~ 301 (400)
T 3p5b_L 237 IYSLVTEN---IQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILED----------EKRLAHPFSLAVF--ED 301 (400)
T ss_dssp CEEEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEEC----------SSTTSSEEEEEEE--TT
T ss_pred cEEEEECC---CCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeC----------CCCCCCCEEEEEe--CC
Confidence 43333322 45688999999888777654 567899999876544333321 1112234566653 35
Q ss_pred CEEEEEECCCeEEEEeCCCCC
Q 001319 1048 NQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1048 ~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
.++++-...+.|..++..+++
T Consensus 302 ~lywtd~~~~~V~~~~~~~G~ 322 (400)
T 3p5b_L 302 KVFWTDIINEAIFSANRLTGS 322 (400)
T ss_dssp EEEEEESSSCSEEEEESSSCC
T ss_pred EEEEecCCCCeEEEEEcCCCC
Confidence 677777777889999977776
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.19 E-value=0.00055 Score=76.85 Aligned_cols=250 Identities=10% Similarity=0.056 Sum_probs=146.3
Q ss_pred CEeEEEecC-CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC-CC----cEEEEEeecc
Q 001319 806 AVPCIALSK-NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-DS----TIHIYNVRVD 878 (1101)
Q Consensus 806 ~v~~~~~s~-dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-dg----~v~iwd~~~~ 878 (1101)
....++++| ++..|.++. .+.|+.+|+.++....... .......++|++ ++++|.++.. ++ .+.+++ ..+
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~-~G~~lyvad~~~~~~~~~v~~~~-~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTH-EADSMIITNDQNNNDRPNNYILT-RES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECT-TSSEEEEEECCSCTTSEEEEEEE-GGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeC-CCCEEEEEeCCCCcccceEEEEe-CCC
Confidence 456789998 455555554 5789999998776554443 455688999999 7885555543 22 233333 333
Q ss_pred eEE--EeeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe
Q 001319 879 EVK--SKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 955 (1101)
Q Consensus 879 ~~~--~~~~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 955 (1101)
... ..+. .......++++| ++.++++-..++.|..++..++.... ....... .....++|+|+|++|.+++
T Consensus 215 ~~~~~~~l~-~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~--~~~~~~~---~~P~gia~~pdG~~lyv~d 288 (430)
T 3tc9_A 215 GFKVITELT-KGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTP--LFTIQDS---GWEFHIQFHPSGNYAYIVV 288 (430)
T ss_dssp TSCSEEEEE-ECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEE--EEECSSS---SCCEEEEECTTSSEEEEEE
T ss_pred ceeeeeeec-cCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEE--EEEcCCC---CcceeEEEcCCCCEEEEEE
Confidence 221 2222 123467889999 67767666677899999998754321 1111111 3467899999999776654
Q ss_pred --CCeEEEEEcCC--cee--eeEeccC---CC---------CCCCEE-EEEEc--------cCCCEEEEEeCCCcEEEEe
Q 001319 956 --ETQLAIYDASK--MER--IRQWTPQ---DA---------LSAPIS-CAVYS--------CNSQLVFATFCDGNIGVFD 1008 (1101)
Q Consensus 956 --d~~i~v~d~~~--~~~--~~~~~~~---~~---------h~~~v~-~v~~s--------~dg~~l~s~~~dg~i~vwd 1008 (1101)
.+.|..++.+. +.. +..+... .+ .-.... .++.. ++|.+.++-...+.|+.++
T Consensus 289 ~~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~ 368 (430)
T 3tc9_A 289 VNQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILT 368 (430)
T ss_dssp TTTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEEC
T ss_pred CCCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEEC
Confidence 67899987653 221 1122111 00 011223 45553 4466666666678899998
Q ss_pred CCCCceeEeeCCC----CcCCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1009 ADTLRLRCYIAPS----TYLSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1009 ~~~~~~~~~~~~~----~~~~~~-~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
.+|......... ...... ......-..+..+++.|.++.++++-...++|+.++++
T Consensus 369 -~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 369 -PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp -TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 456544333210 000000 00011223688999999557777777777889888764
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0005 Score=77.12 Aligned_cols=251 Identities=8% Similarity=0.016 Sum_probs=148.9
Q ss_pred CEeEEEecCC--CCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC---C-cEEEEEeecc
Q 001319 806 AVPCIALSKN--DSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED---S-TIHIYNVRVD 878 (1101)
Q Consensus 806 ~v~~~~~s~d--g~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d---g-~v~iwd~~~~ 878 (1101)
....++++|+ +..|..+. .+.|+.+|..+++...... .......+++++ +++++++.... . .+...+...+
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~-dG~lyVad~~~~~~~~gv~~~~~~~~ 217 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTL-NGDMVVVDDQSSDTNTGIYLFTRASG 217 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECT-TCCEEEEECCSCTTSEEEEEECGGGT
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECC-CCCEEEEcCCCCcccceEEEEECCCC
Confidence 3568899985 34444444 5889999998877665443 455688999999 77755444321 1 1333332221
Q ss_pred eE-EEeeccCCCCeeEEEEcC-CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-
Q 001319 879 EV-KSKLKGHQKRITGLAFST-SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 879 ~~-~~~~~~h~~~V~~l~~s~-d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 955 (1101)
.. ...+. .......++++| +|.+.++-..++.|+.++..++...... .. .+.. .....++|+|++..|.+++
T Consensus 218 ~~~~~~~~-~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~-~~--~~~~-~~~~~ia~dpdG~~LYvad~ 292 (433)
T 4hw6_A 218 FTERLSLC-NARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEE-VM--MDTK-GSNFHIVWHPTGDWAYIIYN 292 (433)
T ss_dssp TCCEEEEE-ECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEE-EE--CSCC-SSCEEEEECTTSSEEEEEET
T ss_pred eecccccc-ccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEE-ec--cCCC-CCcccEEEeCCCCEEEEEeC
Confidence 11 01111 234457789999 6666666667788999998876542111 11 1111 2334699999999777755
Q ss_pred -CCeEEEEEcC--Ccee--eeEeccC---CC---------CCCCEEEEEE---------ccCCCEEEEEeCCCcEEEEeC
Q 001319 956 -ETQLAIYDAS--KMER--IRQWTPQ---DA---------LSAPISCAVY---------SCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 956 -d~~i~v~d~~--~~~~--~~~~~~~---~~---------h~~~v~~v~~---------s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
.+.|..++.+ ++.. ...+... .+ .-.....+++ .++|.+.++-...+.|+.++.
T Consensus 293 ~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~ 372 (433)
T 4hw6_A 293 GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP 372 (433)
T ss_dssp TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT
T ss_pred CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC
Confidence 6789998865 2321 1111111 00 0234677999 777877777777889999985
Q ss_pred CCCceeEeeCCCCc-----CCCc-ccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1010 DTLRLRCYIAPSTY-----LSPS-VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1010 ~~~~~~~~~~~~~~-----~~~~-~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
+|...... +... .... .-....-..+..++++|.++.++++-...++|+.++++
T Consensus 373 -~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 373 -EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp -TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred -CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 56444333 2211 0000 00011223578999995468888877788899988764
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0017 Score=70.06 Aligned_cols=195 Identities=12% Similarity=0.060 Sum_probs=114.1
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEE-eeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE-Ee--ecceE
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTT-FMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY-NV--RVDEV 880 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~-~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw-d~--~~~~~ 880 (1101)
..+..+.+.+++..++++.+|.|.. ..+.|+.-.. .......+..+++.+ ++.+++++. +|.++.- |- .+-+.
T Consensus 122 ~~~~~i~~~~~~~~~~~~~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~-~~~~~~~g~-~G~~~~S~d~gG~tW~~ 198 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMITNVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSP-SGEYVAVSS-RGSFYSTWEPGQTAWEP 198 (327)
T ss_dssp SCEEEEEEEETTEEEEEETTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECT-TSCEEEEET-TSSEEEEECTTCSSCEE
T ss_pred CCeEEEEEECCCCEEEEeCCccEEE-EcCCCCCCEEeecCCCcceEEEEEcC-CCcEEEEEC-CCcEEEEeCCCCCceeE
Confidence 3467788777888887777665432 1222322222 223455788999999 788777664 4555443 21 22233
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEE
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLA 960 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~ 960 (1101)
+. ......+..+++.++++.++ ++.+|.+++++.+.++.-.. +....-.....+..+++.+++..++++.++.+
T Consensus 199 ~~--~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~--~~~~~~~~~~~~~~v~~~~~~~~~~~g~~g~i- 272 (327)
T 2xbg_A 199 HN--RTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGE--LLSPLRRNSVGFLDLAYRTPNEVWLAGGAGAL- 272 (327)
T ss_dssp EE--CCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECC--CBCTTSSCCSCEEEEEESSSSCEEEEESTTCE-
T ss_pred CC--CCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEe--ccCCcccCCcceEEEEecCCCEEEEEeCCCeE-
Confidence 32 23456789999999987654 55678887775332221100 11110001134778899999998888888877
Q ss_pred EEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeC
Q 001319 961 IYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDA 1009 (1101)
Q Consensus 961 v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~ 1009 (1101)
++..+.++.-..+.........+.++.|.++++ +++++.+|.|.-++-
T Consensus 273 ~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 273 LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 455665654444432111135678888876655 556667898776653
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.0013 Score=66.72 Aligned_cols=204 Identities=13% Similarity=0.122 Sum_probs=131.5
Q ss_pred CCCCEeEEEecCCCCeEEE-Ec-CCeEEEEECCCceEEEEeeCC-CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce
Q 001319 803 LEEAVPCIALSKNDSYVMS-AT-GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE 879 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~-~~-dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~ 879 (1101)
....+..++++|++..|.+ .. ++.|...|.. ++.++.+.-. ....-.+++.+ ++.++++.-.++.+.++++....
T Consensus 25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~-~g~~~vs~E~~~~l~~~~v~~~~ 102 (255)
T 3qqz_A 25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIG-DNQFVISDERDYAIYVISLTPNS 102 (255)
T ss_dssp CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECS-TTEEEEEETTTTEEEEEEECTTC
T ss_pred cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeC-CCEEEEEECCCCcEEEEEcCCCC
Confidence 5567999999998765555 44 6789999997 8888877532 24577888888 77776666577899999887543
Q ss_pred E---EEeec------cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe-e---cCCCCCCCcceEEEcC
Q 001319 880 V---KSKLK------GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH-I---PAGKTPTGDTRVQFNA 946 (1101)
Q Consensus 880 ~---~~~~~------~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~-~---~~~~~~~~v~~~~~s~ 946 (1101)
. +.... ........|+|+|+++.|.++.......+|.+..........+. . ...........++++|
T Consensus 103 ~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp 182 (255)
T 3qqz_A 103 EVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQ 182 (255)
T ss_dssp CEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEET
T ss_pred eeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcC
Confidence 2 22221 12345689999999987777776656666666421000011111 0 0011124678999999
Q ss_pred CCCEEEE-Ee-CCeEEEEEcCCceeeeEeccCCCC------CCCEEEEEEccCCCEEEEEeCCCcEEEEeCC
Q 001319 947 DQVRMLV-VH-ETQLAIYDASKMERIRQWTPQDAL------SAPISCAVYSCNSQLVFATFCDGNIGVFDAD 1010 (1101)
Q Consensus 947 d~~~l~~-~~-d~~i~v~d~~~~~~~~~~~~~~~h------~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~ 1010 (1101)
....+.+ ++ .+.+.++|.. ++.+..+....+. -.....|+|.++|+ |...++.+.+++|.-.
T Consensus 183 ~tg~lliLS~~s~~L~~~d~~-g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~n~~y~f~~~ 252 (255)
T 3qqz_A 183 QKNTLLVLSHESRALQEVTLV-GEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEPNRFYRFTPQ 252 (255)
T ss_dssp TTTEEEEEETTTTEEEEECTT-CCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETTTEEEEEEC-
T ss_pred CCCeEEEEECCCCeEEEEcCC-CCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCCceEEEEEec
Confidence 8776666 43 5778888866 5555555443211 13678999999998 5555777777777543
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=98.17 E-value=0.00017 Score=87.71 Aligned_cols=200 Identities=6% Similarity=-0.041 Sum_probs=111.3
Q ss_pred ccCCc-cEEEEEEc-cCCCEEEEEEC-C----CeEEEEeecCC-cccccceeeecccCcEEEEEEecCCCceEEEEecCC
Q 001319 403 KDVPI-SVSRVAWS-PDGNYVGVAFT-K----HLIQLYSYAGS-NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD 474 (1101)
Q Consensus 403 ~~h~~-~v~~~~~s-pdg~~las~~~-d----~~i~vwd~~~~-~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d 474 (1101)
.+|.. .+...+|| |||++||.+.. + ..|+++|+.++ +.+.. .+.. ....++|+|||+. |+....|
T Consensus 169 ~~~~~~~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~--~~~~---~~~~~~WspDg~~--l~y~~~d 241 (751)
T 2xe4_A 169 EGKAFCDVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIAD--KVSG---TNGEIVWGPDHTS--LFYVTKD 241 (751)
T ss_dssp TTCSCCEEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCC--CEEE---ECSCCEECSSTTE--EEEEEEC
T ss_pred cCCCeEEEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCc--cccC---ceeeEEEecCCCE--EEEEEEC
Confidence 34554 78899999 99999997643 2 25999999998 63321 1211 2456899999985 3333333
Q ss_pred -----ceEEEEE-cCCce--eEEee-cCCcCeEEEecccCCCccEEEEecc---CCeEEEEecCCCC-ee--eec-cCCC
Q 001319 475 -----KLIKVWE-LSGRK--LFNFE-GHEAPVYSICPHHKENIQFIFSTAI---DGKIKAWLYDTMG-SR--VDY-DAPG 538 (1101)
Q Consensus 475 -----~~v~iwd-~~~~~--~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~~---d~~i~~wd~~~~~-~~--~~~-~~~~ 538 (1101)
..|.+++ .++.. ...+. ........+.|++ ||++|+..+. ...|.++|+.++. .. ..+ ....
T Consensus 242 ~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~Sp--Dg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~ 319 (751)
T 2xe4_A 242 ETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAA--DTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREK 319 (751)
T ss_dssp TTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECT--TSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCT
T ss_pred CCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECC--CCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCC
Confidence 3577777 44431 22222 2233456677876 6677765553 3468888887753 12 222 2233
Q ss_pred CceEEEEEccCCCEEEEeecCC-CCCceEEEEeCCCC-eeEE-EecccCCcceEEEEEeCCCCEEEE-EeCCCc--EEEE
Q 001319 539 HWCTTMLYSADGSRLFSCGTSK-DGDSFLVEWNESEG-TIKR-TYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQ--IKFW 612 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~-~~~~~i~iwd~~~~-~~~~-~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~--i~iw 612 (1101)
....++.|+ +|..|+..+... .+...|..+|+.++ +... .+.......+..+ .+.++.|+. ...++. |+++
T Consensus 320 ~~~~s~~~~-~g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~--~~~~~~lv~~~~~~g~~~l~~~ 396 (751)
T 2xe4_A 320 GVRYDVQMH-GTSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESI--AVRSNYLVVAGRRAGLTRIWTM 396 (751)
T ss_dssp TCCEEEEEE-TTTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEE--EECSSEEEEEEEETTEEEEEEE
T ss_pred CceEEEeee-eCCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEE--EEECCEEEEEEEeCCEEEEEEE
Confidence 344454443 366665554322 24567888888753 3222 2332222123334 444555554 556665 5555
Q ss_pred EC
Q 001319 613 DM 614 (1101)
Q Consensus 613 d~ 614 (1101)
++
T Consensus 397 dl 398 (751)
T 2xe4_A 397 MA 398 (751)
T ss_dssp EC
T ss_pred ec
Confidence 65
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=98.15 E-value=0.0019 Score=67.91 Aligned_cols=187 Identities=9% Similarity=0.162 Sum_probs=122.5
Q ss_pred CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC----C---EEEEEeC---CCcEEEEEee--cceEEEeecc-----
Q 001319 824 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN----N---IIAIGTE---DSTIHIYNVR--VDEVKSKLKG----- 886 (1101)
Q Consensus 824 dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~----~---~la~g~~---dg~v~iwd~~--~~~~~~~~~~----- 886 (1101)
.+.+.+||+ +|+.+..+.. +.+..+..-| +- + ++++... +++|.+|++. +++ +..+..
T Consensus 49 ~~gL~Vydl-~G~~l~~~~~--g~~nnVD~r~-~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~-l~~i~~~~~pv 123 (355)
T 3amr_A 49 KSGLVVYSL-DGKMLHSYNT--GKLNNVDIRY-DFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGT-LQSMTDPDHPI 123 (355)
T ss_dssp TTEEEEEET-TSCEEEEECC--SCEEEEEEEE-EEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCC-EEECSCTTSCE
T ss_pred CCCEEEEcC-CCcEEEEccC--CCcccEEEec-ccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCc-eeeccccccCc
Confidence 678999999 8898888863 5677777766 22 1 3333333 5799999884 333 444421
Q ss_pred -CC-CCeeEEEE--cCC-CC-EEEEEeCCCcEEEEECC---CCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-C
Q 001319 887 -HQ-KRITGLAF--STS-LN-ILVSSGADAQLCVWSID---TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-E 956 (1101)
Q Consensus 887 -h~-~~V~~l~~--s~d-~~-~l~s~s~Dg~v~lwd~~---~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d 956 (1101)
.. ..+..+++ ++. ++ ++++...+|.+..|++. .+............+ ..+..+...+....|.++. +
T Consensus 124 ~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lg---sq~EgcvvDd~~g~Lyv~eEd 200 (355)
T 3amr_A 124 ATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMN---SQTEGMAADDEYGRLYIAEED 200 (355)
T ss_dssp ECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECS---SCEEEEEEETTTTEEEEEETT
T ss_pred CCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCC---CCcceEEEcCCCCeEEEeccc
Confidence 12 56778888 774 43 68888889999999984 332222211222222 5678899999888888876 5
Q ss_pred CeEEEEEcC-----CceeeeEeccCCCCCCCEEEEEE--ccCCC-EEEEEe-CCCcEEEEeCC-CCceeEeeC
Q 001319 957 TQLAIYDAS-----KMERIRQWTPQDALSAPISCAVY--SCNSQ-LVFATF-CDGNIGVFDAD-TLRLRCYIA 1019 (1101)
Q Consensus 957 ~~i~v~d~~-----~~~~~~~~~~~~~h~~~v~~v~~--s~dg~-~l~s~~-~dg~i~vwd~~-~~~~~~~~~ 1019 (1101)
..|..|+.+ +++.+..+..... ...+..|++ .++|+ ||++++ .+.+..|||.. +.+.+..+.
T Consensus 201 ~GIw~~da~p~~~~~~~~v~~~~~g~l-~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~~~~~~vg~f~ 272 (355)
T 3amr_A 201 EAIWKFSAEPDGGSNGTVIDRADGRHL-TRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQGKNKYVADFR 272 (355)
T ss_dssp TEEEEEECSTTSCSCCEEEEEBSSSSB-CSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred ceEEEEeCCcCCCCCceEEEEecCCcc-ccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECCCCCcEEEEEE
Confidence 556666754 3455555432211 346888887 66777 677666 67799999997 777777774
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.11 E-value=0.0018 Score=71.90 Aligned_cols=231 Identities=9% Similarity=-0.045 Sum_probs=138.2
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+..++.-.............+.+++|++.+..|+.+-...+.|..++++....... ...+.....
T Consensus 94 I~~i~l~~~~~~~~~~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~---------------~~~~~~~~~ 158 (400)
T 3p5b_L 94 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDI 158 (400)
T ss_dssp EEEECTTSCSCEEEECSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CC---------------CEEEECSSC
T ss_pred eEEEccCCcceeEeccccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCc---------------ceEEEeCCC
Confidence 44444444444555556678999999997766766666678898888865321000 001122234
Q ss_pred ccEEEEEEccCCCEEEEE-ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe-cCCceEEEEEcCC
Q 001319 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWELSG 484 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-~~d~~v~iwd~~~ 484 (1101)
.....+++.+.+..|..+ ...+.|.+.++++..... .+.........+++.|.+.. ++++- +..+.|...+.+|
T Consensus 159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~---l~~~~~~~P~~iavdp~~g~-ly~td~~~~~~I~~~~~dG 234 (400)
T 3p5b_L 159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGF-MYWTDWGTPAKIKKGGLNG 234 (400)
T ss_dssp SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEE---EEECSSCCEEEEEEETTTTE-EEEEECSSSCCEEEEETTS
T ss_pred CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEE---EEeCCCCCcceEEEecccCe-EEEEeCCCCCEEEEEeCCC
Confidence 567899999855555554 457789999988654222 22233445789999997764 34443 3347888888777
Q ss_pred ceeEEeec-CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC--CCCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA--PGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
.....+.. .-.....|++.+.. +.+.++-...+.|..+|++.......... ......++++ ++..++..-.
T Consensus 235 ~~~~~~~~~~l~~P~glavd~~~-~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v--~~~~lywtd~--- 308 (400)
T 3p5b_L 235 VDIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI--- 308 (400)
T ss_dssp CSCEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEE--ETTEEEEEES---
T ss_pred CccEEEEECCCCceEEEEEEeCC-CEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEE--eCCEEEEecC---
Confidence 66555532 33567889987643 34445555678899999876544433332 2234556666 3334443322
Q ss_pred CCceEEEEeCCCCeeEEEecc
Q 001319 562 GDSFLVEWNESEGTIKRTYAG 582 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~ 582 (1101)
+.+.|..+|..+|+.+..+..
T Consensus 309 ~~~~V~~~~~~~G~~~~~i~~ 329 (400)
T 3p5b_L 309 INEAIFSANRLTGSDVNLLAE 329 (400)
T ss_dssp SSCSEEEEESSSCCCCEEEEC
T ss_pred CCCeEEEEEcCCCCceEEEec
Confidence 366788888777766555543
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00047 Score=77.38 Aligned_cols=240 Identities=8% Similarity=0.115 Sum_probs=138.0
Q ss_pred cEEEEEEcc-CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc----eEEEEEc
Q 001319 408 SVSRVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK----LIKVWEL 482 (1101)
Q Consensus 408 ~v~~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~----~v~iwd~ 482 (1101)
....++|+| ++..|.++...+.|+.+|.+++.... +.........++|+++|+. ++++...++ .+.+.+.
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~----~~~~~~~P~~ia~d~~G~~-lyvad~~~~~~~~~v~~~~~ 212 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVST----VYSGLSKVRTICWTHEADS-MIITNDQNNNDRPNNYILTR 212 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEE----EECCCSCEEEEEECTTSSE-EEEEECCSCTTSEEEEEEEG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEE----EecCCCCcceEEEeCCCCE-EEEEeCCCCcccceEEEEeC
Confidence 567899998 46667776665789999998765322 3334556889999999985 333333222 3444444
Q ss_pred CCcee--EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-cCCCCceEEEEEccCCCEEEEeecC
Q 001319 483 SGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-DAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 483 ~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
.+... ..+.. ......+++.+. ++.++++-..++.|..++.+........ .........++|+|+|++|+.+..
T Consensus 213 ~g~~~~~~~l~~-~~~p~giavdp~-~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~- 289 (430)
T 3tc9_A 213 ESGFKVITELTK-GQNCNGAETHPI-NGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV- 289 (430)
T ss_dssp GGTSCSEEEEEE-CSSCCCEEECTT-TCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET-
T ss_pred CCceeeeeeecc-CCCceEEEEeCC-CCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC-
Confidence 44332 23322 223456677653 4566666667889999998765542222 222345789999999997666543
Q ss_pred CCCCceEEEEeCCC--Cee--EEEeccc------CC--------cceE-EEEEe--------CCCCEEEEEeCCCcEEEE
Q 001319 560 KDGDSFLVEWNESE--GTI--KRTYAGF------RK--------KSNG-VVQFD--------TTQNHFLAVGEDSQIKFW 612 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~--~~~--~~~~~~~------~~--------~~v~-~~~~~--------~~~~~l~~~~~dg~i~iw 612 (1101)
..+.|..++... ++. ...+.+. .. .... .+++. +++..+++=...+.|+.+
T Consensus 290 --~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i 367 (430)
T 3tc9_A 290 --NQHYILRSDYDWKTKRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRIL 367 (430)
T ss_dssp --TTTEEEEEEEETTTTEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEE
T ss_pred --CCCEEEEEeCCcccccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEE
Confidence 367888877542 332 2222221 00 0122 35553 334444444566788888
Q ss_pred ECCCCeeeEeecc---------CC------CCCCCCeeEEecC-CCEEEEEEcCCcEEEEEc
Q 001319 613 DMDNVNILTSTDA---------EG------GLPNLPRLRFSKE-GNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 613 d~~~~~~~~~~~~---------~~------~~~~v~~v~~s~~-g~~l~~~~~d~~i~iwd~ 658 (1101)
+ .++........ .+ ....-..++++|+ +.++++-..++.|+.++.
T Consensus 368 ~-~~G~v~~~~g~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~ 428 (430)
T 3tc9_A 368 T-PQGRVTTFAGRGSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGY 428 (430)
T ss_dssp C-TTSEEEEEEECCTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEE
T ss_pred C-CCCcEEEEEeCCCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEcc
Confidence 8 45554333221 00 0123467889985 544444445667777664
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0039 Score=66.56 Aligned_cols=237 Identities=11% Similarity=0.035 Sum_probs=144.5
Q ss_pred eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEE-ECCCeEEEEeec
Q 001319 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYA 436 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~-~~d~~i~vwd~~ 436 (1101)
+||++ ....|+..+++....... ........+.+++|.+.+..|... ...+.|..++..
T Consensus 6 ~ll~~--~~~~I~~i~l~~~~~~~~------------------~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~ 65 (318)
T 3sov_A 6 LLLYA--NRRDLRLVDATNGKENAT------------------IVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFN 65 (318)
T ss_dssp EEEEE--CEEEEEEEETTCTTSCCE------------------EEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETT
T ss_pred EEEEE--ccCeEEEEECCCCceEEE------------------EEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEcc
Confidence 35443 456899999886531110 011122357799999966666555 456789999988
Q ss_pred CCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEecccCCCccEEEEec
Q 001319 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSICPHHKENIQFIFSTA 515 (1101)
Q Consensus 437 ~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~~~~~~~~~~l~s~~ 515 (1101)
++..... .+.........+++.+.+.. ++++-...+.|.+++.+|.....+. ........+++.+.. ..|+.+.
T Consensus 66 g~~~~~~--~~~~~l~~p~glavd~~~g~-ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~--g~ly~td 140 (318)
T 3sov_A 66 KTESVQN--VVVSGLLSPDGLACDWLGEK-LYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSS--GFMYWTD 140 (318)
T ss_dssp SSSCCCE--EEEECCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGG--TEEEEEE
T ss_pred CCCceEE--EEcCCCCCccEEEEEcCCCe-EEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCC--CEEEEEe
Confidence 7642211 12222345678999986664 5566666789999997776554443 344567888887642 3444443
Q ss_pred --cCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEE
Q 001319 516 --IDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQF 593 (1101)
Q Consensus 516 --~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~ 593 (1101)
..+.|...+++...........-.....+++++++..|..+-. +.+.|..+|+..........+... ....+++
T Consensus 141 ~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~---~~~~I~~~d~dG~~~~~~~~~~~~-~P~glav 216 (318)
T 3sov_A 141 WGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADA---KLNFIHKSNLDGTNRQAVVKGSLP-HPFALTL 216 (318)
T ss_dssp CSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEECSCCS-CEEEEEE
T ss_pred cCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEEC---CCCEEEEEcCCCCceEEEecCCCC-CceEEEE
Confidence 3577888887654433333333456789999998887776643 467899999875433333332222 3455666
Q ss_pred eCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 594 DTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 594 ~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
.. +..+++-...+.|..++..+++....+.
T Consensus 217 ~~-~~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 217 FE-DILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp ET-TEEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eC-CEEEEEecCCCeEEEEECCCCCceEEEe
Confidence 43 3344444467788888887776655554
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.0014 Score=73.38 Aligned_cols=240 Identities=9% Similarity=0.099 Sum_probs=138.0
Q ss_pred ccEEEEEEccC--CCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC---c-eEEEE
Q 001319 407 ISVSRVAWSPD--GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD---K-LIKVW 480 (1101)
Q Consensus 407 ~~v~~~~~spd--g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d---~-~v~iw 480 (1101)
.....++|+|+ +..|.++...+.|+.+|..+++... +.........++|+++|+ ++++.... . .+...
T Consensus 139 ~~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~----~~~~~~~P~giavd~dG~--lyVad~~~~~~~~gv~~~ 212 (433)
T 4hw6_A 139 DNIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDI----KTTNIGQCADVNFTLNGD--MVVVDDQSSDTNTGIYLF 212 (433)
T ss_dssp SCCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEE----ECCCCSCEEEEEECTTCC--EEEEECCSCTTSEEEEEE
T ss_pred CCCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEE----eecCCCCccEEEECCCCC--EEEEcCCCCcccceEEEE
Confidence 34678999995 4556666554889999998765432 333445689999999999 55554321 2 23334
Q ss_pred EcCCcee--EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCe-eeec-cCCCCceEEEEEccCCCEEEEe
Q 001319 481 ELSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGS-RVDY-DAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 481 d~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~-~~~~-~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
+..+... ..+. .-.....+++.+. +|.+.++-..++.|+.++..++.. .... .........++|+|+|++|..+
T Consensus 213 ~~~~~~~~~~~~~-~~~~P~giavd~~-~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 213 TRASGFTERLSLC-NARGAKTCAVHPQ-NGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp CGGGTTCCEEEEE-ECSSBCCCEECTT-TCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred ECCCCeecccccc-ccCCCCEEEEeCC-CCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 4222211 1121 1233455666553 445555666678899998876554 1111 1222234579999999976665
Q ss_pred ecCCCCCceEEEEeCC--CCee--EEEeccc---C-----------CcceEEEEE---------eCCCCEEEEEeCCCcE
Q 001319 557 GTSKDGDSFLVEWNES--EGTI--KRTYAGF---R-----------KKSNGVVQF---------DTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~--~~~~--~~~~~~~---~-----------~~~v~~~~~---------~~~~~~l~~~~~dg~i 609 (1101)
-. ..+.|+.++.. ++.. ...+.+. . -.....+++ .++++.+++-...+.|
T Consensus 291 d~---~~~~I~~~~~d~~~~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I 367 (433)
T 4hw6_A 291 YN---GKHCIYRVDYNRETGKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTV 367 (433)
T ss_dssp ET---TTTEEEEEEBCTTTCCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEE
T ss_pred eC---CCCEEEEEeCCCCCcccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEE
Confidence 43 46789887765 3322 1222221 0 012455888 6666666666677889
Q ss_pred EEEECCCCeeeEeeccCCC----------------CCCCCeeEEe-cCCCEEEEEEcCCcEEEEEcc
Q 001319 610 KFWDMDNVNILTSTDAEGG----------------LPNLPRLRFS-KEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~----------------~~~v~~v~~s-~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+.++. ++...... ..+. ......++++ ++|.++++-..++.|+.++++
T Consensus 368 ~~~~~-~G~v~t~~-G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 368 RVLTP-EGRVTTYA-GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp EEECT-TSEEEEEE-CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred EEECC-CCCEEEEE-eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 99985 55443322 2110 1123578888 455555554556677776653
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00095 Score=71.31 Aligned_cols=227 Identities=9% Similarity=-0.007 Sum_probs=141.8
Q ss_pred eEEEEcCCeEEEEECCCce--EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE-EeeccCCCCeeEE
Q 001319 818 YVMSATGGKISLFNMMTFK--VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK-SKLKGHQKRITGL 894 (1101)
Q Consensus 818 ~la~~~dg~i~vwd~~~~~--~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~-~~~~~h~~~V~~l 894 (1101)
+|+.+....|+.+++.... ....+.+ ......++|.+.++.++.+-...+.|+.+++..+... ..+.........+
T Consensus 6 ~ll~~~~~~I~~i~l~~~~~~~~~~~~~-~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~gl 84 (318)
T 3sov_A 6 LLLYANRRDLRLVDATNGKENATIVVGG-LEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGL 84 (318)
T ss_dssp EEEEECEEEEEEEETTCTTSCCEEEEEE-EEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEE
T ss_pred EEEEEccCeEEEEECCCCceEEEEEecC-CCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEE
Confidence 4555556778889987653 2122221 2346789999845566666667788999988765321 1222223456789
Q ss_pred EEcCCCC-EEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe---CCeEEEEEcCCceee
Q 001319 895 AFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH---ETQLAIYDASKMERI 970 (1101)
Q Consensus 895 ~~s~d~~-~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~---d~~i~v~d~~~~~~~ 970 (1101)
++.+.+. +.++-...+.|.+++++..... . +. .. .......++++|.+..|..++ .+.|..++.+.....
T Consensus 85 avd~~~g~ly~~d~~~~~I~~~~~dG~~~~-~--l~--~~-~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 85 ACDWLGEKLYWTDSETNRIEVSNLDGSLRK-V--LF--WQ-ELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF 158 (318)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSCSCE-E--EE--CS-SCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred EEEcCCCeEEEEECCCCEEEEEECCCCcEE-E--EE--eC-CCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeE
Confidence 9987544 5555556788999998764321 1 11 11 114568899999877777654 467888888643332
Q ss_pred eEeccCCCCCCCEEEEEEccCCCEEEEE-eCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCE
Q 001319 971 RQWTPQDALSAPISCAVYSCNSQLVFAT-FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQ 1049 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~ 1049 (1101)
...... -.....+++++++..|+.+ +..+.|..+|++......... .....+.+++... +.+
T Consensus 159 ~~~~~~---l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~------------~~~~~P~glav~~--~~l 221 (318)
T 3sov_A 159 IIINSE---IYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVK------------GSLPHPFALTLFE--DIL 221 (318)
T ss_dssp EEECSS---CSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEC------------SCCSCEEEEEEET--TEE
T ss_pred EEEECC---CCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEec------------CCCCCceEEEEeC--CEE
Confidence 222221 4567899999977766655 456789999987543322222 1122445666643 567
Q ss_pred EEEEECCCeEEEEeCCCCC
Q 001319 1050 FAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1050 l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+.+-...+.|..++..+++
T Consensus 222 ywtd~~~~~V~~~~~~~G~ 240 (318)
T 3sov_A 222 YWTDWSTHSILACNKYTGE 240 (318)
T ss_dssp EEEETTTTEEEEEETTTCC
T ss_pred EEEecCCCeEEEEECCCCC
Confidence 7777778899999998877
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.96 E-value=0.0024 Score=71.47 Aligned_cols=256 Identities=7% Similarity=-0.008 Sum_probs=150.7
Q ss_pred CEeEEEecC-CCCeEEEEc--CCeEEEEECCCceEEEEeeCC---CCCeeEEEE-------ecCCCCEEEEEeCCC-c--
Q 001319 806 AVPCIALSK-NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP---PPASTFLAF-------HPQDNNIIAIGTEDS-T-- 869 (1101)
Q Consensus 806 ~v~~~~~s~-dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~---~~~i~~l~~-------s~~~~~~la~g~~dg-~-- 869 (1101)
....++|+| ++..|.++. .+.|++.|++++......... ......++| ++ ++..|.++...+ .
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~-~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYAD-EAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBC-TTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCC-CCCEEEEEeCCCCCcc
Confidence 467899998 344444444 367999999887776655432 235789999 99 777565555443 2
Q ss_pred ----EEEEEeec-ceEE-----EeeccCCCCeeEEEEcCC-CCEEEEEeCCCcEEEEECC-------CCcc------c--
Q 001319 870 ----IHIYNVRV-DEVK-----SKLKGHQKRITGLAFSTS-LNILVSSGADAQLCVWSID-------TWEK------R-- 923 (1101)
Q Consensus 870 ----v~iwd~~~-~~~~-----~~~~~h~~~V~~l~~s~d-~~~l~s~s~Dg~v~lwd~~-------~~~~------~-- 923 (1101)
|.+++... +... ..+.. -.....++++|+ +.++++-..++.|..+|+. ++.. .
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~-~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~ 297 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAA-YKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNP 297 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEE-ESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCT
T ss_pred cCceEEEEecCCCCceeecccceeecc-CCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccc
Confidence 66665343 2211 12211 123467889995 4555566677889999998 5543 0
Q ss_pred --cceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcC--Ccee--eeEeccC---CC---------CCCCE
Q 001319 924 --KSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDAS--KMER--IRQWTPQ---DA---------LSAPI 983 (1101)
Q Consensus 924 --~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~--~~~~--~~~~~~~---~~---------h~~~v 983 (1101)
......... ......++|+|+|..|.+++ .+.|+.++.+ .+.. ...+... .+ .-...
T Consensus 298 g~~~~l~~~~~---~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P 374 (496)
T 3kya_A 298 NTFKQLFTIAD---PSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNP 374 (496)
T ss_dssp TTEEEEEECSS---SSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSE
T ss_pred cccceeEecCC---CCCceEEEEcCCCCEEEEEeCCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCC
Confidence 001122211 13467899999999766654 6788886543 3321 0111111 00 01234
Q ss_pred E-EEEEc-------cCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcC-----------CCc-ccCCCCccceEEEEEe
Q 001319 984 S-CAVYS-------CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL-----------SPS-VLNGSQTVYPLVVAAH 1043 (1101)
Q Consensus 984 ~-~v~~s-------~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-----------~~~-~~~h~~~~~~~~l~~~ 1043 (1101)
. .++.. ++|.+.++-.....|+.++ .+|. +.++.+.... ... .-....-..+..|+++
T Consensus 375 ~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd 452 (496)
T 3kya_A 375 CQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYD 452 (496)
T ss_dssp EEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEE
T ss_pred eEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEE
Confidence 4 45554 5677777777788999999 5664 3344332110 000 0011223457899999
Q ss_pred cCCCCEEEEEECCCeEEEEeCCCCC
Q 001319 1044 PLEPNQFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1044 p~d~~~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+..+.++++=....+|+.++++...
T Consensus 453 ~~~g~lyVaD~~N~rIrki~~~~~~ 477 (496)
T 3kya_A 453 DVKEMFYVHDQVGHTIRTISMEQEE 477 (496)
T ss_dssp TTTTEEEEEETTTTEEEEEEECCCC
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCc
Confidence 9437777777788899999987755
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0043 Score=74.57 Aligned_cols=231 Identities=8% Similarity=-0.028 Sum_probs=136.5
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+..++.-.............+.+++|++.+.+|+.+-...+.|+.+++........ ...++....
T Consensus 406 Ir~i~l~~~~~~~l~~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~---------------~~~vi~~~l 470 (791)
T 3m0c_C 406 VRKMTLDRSEYTSLIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDI 470 (791)
T ss_dssp EEEECTTSCCCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSC
T ss_pred eeEeeccCCcceeeecCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcc---------------eeEEEecCC
Confidence 33333333344444555677899999997666777766678898888875321000 001122234
Q ss_pred ccEEEEEEccCCCEEEEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCc
Q 001319 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGR 485 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~ 485 (1101)
.....|++.+.++.|..+. ..+.|.+.++++... .. .+.........|++.|.+.++|+.-.+..+.|.+.+.+|.
T Consensus 471 ~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~-~~--l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~ 547 (791)
T 3m0c_C 471 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR-KT--LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGV 547 (791)
T ss_dssp SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSE-EE--EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSC
T ss_pred CCcceeeeeecCCcEEEEecCCCeEEEEeCCCCeE-EE--EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCC
Confidence 4667899998886666554 567899999886432 21 2223445688999999876533333233477888888887
Q ss_pred eeEEeec-CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC--CceEEEEEccCCCEEEEeecCCCC
Q 001319 486 KLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 486 ~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
....+.. .-.....|++.+.. +.+.++-...+.|...+++.......+.... ....+|++ ++.+|+..-. +
T Consensus 548 ~~~~lv~~~l~~P~GLavD~~~-~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~---~ 621 (791)
T 3m0c_C 548 DIYSLVTENIQWPNGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDI---I 621 (791)
T ss_dssp CEEEEECSSCSCEEEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEET---T
T ss_pred ceEEEEeCCCCCceEEEEecCC-CeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEEC---C
Confidence 7665543 23567888887543 3444554566789999987655544443322 23445665 3335554432 3
Q ss_pred CceEEEEeCCCCeeEEEec
Q 001319 563 DSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~ 581 (1101)
.+.|...|..+|+.+..+.
T Consensus 622 ~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 622 NEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp TTEEEEEETTTCCCCEEEE
T ss_pred CCEEEEEeCCCCcceEEee
Confidence 5677777776665555543
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.90 E-value=0.0095 Score=71.63 Aligned_cols=212 Identities=10% Similarity=-0.023 Sum_probs=130.3
Q ss_pred CCccEEEEEEccCCCEEEEE-ECCCeEEEEeecCCccc-ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEc
Q 001319 405 VPISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDL-RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL 482 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~-~~d~~i~vwd~~~~~~~-~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~ 482 (1101)
....+..|+|.+.+..|... ...+.|+.+++...... .....+.........|++.+.+++ ++++-...+.|.+.+.
T Consensus 422 ~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~-LY~tD~~~~~I~v~~l 500 (791)
T 3m0c_C 422 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADT 500 (791)
T ss_dssp SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEET
T ss_pred CCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCc-EEEEecCCCeEEEEeC
Confidence 34567899999966666555 45678999998763211 011123334456778999988865 5666677889999997
Q ss_pred CCceeEEeec-CCcCeEEEecccCCCccEEEEecc-CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 483 SGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 483 ~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+|.....+.. .......|++.+.. |.+.++-.. .+.|...+++.......+.........|++++.+..|+.+-.
T Consensus 501 dG~~~~~l~~~~l~~P~gIaVDp~~-g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~-- 577 (791)
T 3m0c_C 501 KGVKRKTLFRENGSKPRAIVVDPVH-GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS-- 577 (791)
T ss_dssp TSSSEEEEEECTTCCEEEEEEETTT-TEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET--
T ss_pred CCCeEEEEEeCCCCCcceEEEecCC-CCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeC--
Confidence 7776655543 34457889987642 334444323 367888888765555544444567899999988887777643
Q ss_pred CCCceEEEEeCCCCeeEEEecccCC-cceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEee
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~ 623 (1101)
+...|...++........+..... .....+++ .+.+|+.+. ..+.|...|..+++.+..+
T Consensus 578 -~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav--~~~~lYwtD~~~~~I~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 578 -KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAV--FEDKVFWTDIINEAIFSANRLTGSDVNLL 639 (791)
T ss_dssp -TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEE--ETTEEEEEETTTTEEEEEETTTCCCCEEE
T ss_pred -CCCcEEEEecCCCceEEEecCCCccCCCCEEEE--eCCEEEEEECCCCEEEEEeCCCCcceEEe
Confidence 467899999865544444332211 12233444 344555544 5567777777666555544
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0049 Score=68.89 Aligned_cols=246 Identities=10% Similarity=0.098 Sum_probs=138.7
Q ss_pred cEEEEEEcc-CCCEEEEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEE-------ecCCCceEEEEecCC----
Q 001319 408 SVSRVAWSP-DGNYVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAF-------AYPNKLLCVVTCGDD---- 474 (1101)
Q Consensus 408 ~v~~~~~sp-dg~~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~-------s~d~~~~~l~s~~~d---- 474 (1101)
....|+|+| ++..|.++. ..+.|++.|.+++........-.+.......++| +++|+. ++++...+
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~-lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEY-MIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCE-EEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCE-EEEEeCCCCCcc
Confidence 467899999 455555554 3467888898886543211100112235899999 999984 33333333
Q ss_pred --ceEEEEE-cC-Ccee-----EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecC-------CCCe--------
Q 001319 475 --KLIKVWE-LS-GRKL-----FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD-------TMGS-------- 530 (1101)
Q Consensus 475 --~~v~iwd-~~-~~~~-----~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~-------~~~~-------- 530 (1101)
..|.+.+ .. |... ..+.... ....+++++. ++.++++-..++.|..+|++ ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~-~p~giavdp~-~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~ 296 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYK-QCNGATIHPI-NGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNN 296 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEES-CCCCEEECTT-TCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGC
T ss_pred cCceEEEEecCCCCceeecccceeeccCC-CceEEEEcCC-CCeEEEEECCCCEEEEEecccccccccCceeeccccccc
Confidence 2366776 22 2321 2222111 2345666653 45666677788899999987 4432
Q ss_pred -----eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC--CCCee--EEEeccc---CC-----------cc
Q 001319 531 -----RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE--SEGTI--KRTYAGF---RK-----------KS 587 (1101)
Q Consensus 531 -----~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~--~~~~~--~~~~~~~---~~-----------~~ 587 (1101)
.............++|+|+|++|..+-. ....|+.++. .++.. ...+.+. .+ ..
T Consensus 297 ~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~---~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~ 373 (496)
T 3kya_A 297 PNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVI---NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNN 373 (496)
T ss_dssp TTTEEEEEECSSSSCCEEEEECTTSSEEEEEET---TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSS
T ss_pred ccccceeEecCCCCCceEEEEcCCCCEEEEEeC---CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCC
Confidence 1111222345689999999996555532 3678888554 44432 1223221 00 01
Q ss_pred eE-EEEEe-------CCCCEEEEEeCCCcEEEEECCCCeeeEeeccCC----------------------CCCCCCeeEE
Q 001319 588 NG-VVQFD-------TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG----------------------GLPNLPRLRF 637 (1101)
Q Consensus 588 v~-~~~~~-------~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~----------------------~~~~v~~v~~ 637 (1101)
.. .++.. +++..+++=..+..|+.++ .++. +.++.+.+ ....-..|++
T Consensus 374 P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIav 451 (496)
T 3kya_A 374 PCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVY 451 (496)
T ss_dssp EEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEE
T ss_pred CeEEEEEccccccccCCCeEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEE
Confidence 23 45554 4555555556778899998 4554 33332211 0122357888
Q ss_pred ecC-CCEEEEEEcCCcEEEEEcccc
Q 001319 638 SKE-GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 638 s~~-g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+++ |.+.++=..++.|+.++++..
T Consensus 452 d~~~g~lyVaD~~N~rIrki~~~~~ 476 (496)
T 3kya_A 452 DDVKEMFYVHDQVGHTIRTISMEQE 476 (496)
T ss_dssp ETTTTEEEEEETTTTEEEEEEECCC
T ss_pred ECCCCEEEEEeCCCCEEEEEECCCC
Confidence 886 655555556778888887654
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.00052 Score=82.12 Aligned_cols=209 Identities=12% Similarity=-0.030 Sum_probs=124.5
Q ss_pred ccEEEEEEccCCCEEEEEE-CCCeEEEEeecC----CcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 407 ISVSRVAWSPDGNYVGVAF-TKHLIQLYSYAG----SNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~~-~d~~i~vwd~~~----~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+..++|++++..|..+. ..+.|+.+++.+ ..... .+.........|++.+.+.. ++++-...+.|.+.+
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~---~i~~~~~~P~glavD~~~g~-LY~tD~~~~~I~v~d 481 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDT---VISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVAD 481 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCC---BCCSCC--CCCEECCCSSSB-CEECCTTTSCEEEEB
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEE---EEeCCCCCcceEEEEeeCCc-EEEEeccCCeEEEEe
Confidence 3567899999877777664 457899999875 22111 11112223566888866554 455656678899999
Q ss_pred cCCceeEEeec-CCcCeEEEecccCCCccEEEEec-cC-CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 482 LSGRKLFNFEG-HEAPVYSICPHHKENIQFIFSTA-ID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 482 ~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~-~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
..|..+..+.. .......+++.+.. .+|+.+. .. +.|...+++.................|++++++..|+.+-.
T Consensus 482 ~dg~~~~~l~~~~~~~P~giavDp~~--g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 482 TKGVKRKTLFREQGSKPRAIVVDPVH--GFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp SSSCCEEEECCCSSCCCCCEECCSSS--SCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEET
T ss_pred cCCCceEEEEeCCCCCcceEEEccCC--CcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEec
Confidence 76765555432 22445777876642 3344333 22 67877776544333333333445678999998777766543
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
+.+.|..+++........+.... ......+++..+ ..+++....+.|..++..+++.+..+..
T Consensus 560 ---~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~~ 623 (699)
T 1n7d_A 560 ---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLAE 623 (699)
T ss_dssp ---TTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCCT
T ss_pred ---CCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEeec
Confidence 46789999987543333322111 112233555443 3344445678999999888888777643
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.70 E-value=0.0061 Score=64.10 Aligned_cols=185 Identities=13% Similarity=0.185 Sum_probs=117.8
Q ss_pred EEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCC--Ccc---EEE-Eecc--CCeEEEEecCCCC-eeeeccC-
Q 001319 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE--NIQ---FIF-STAI--DGKIKAWLYDTMG-SRVDYDA- 536 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~--~~~---~l~-s~~~--d~~i~~wd~~~~~-~~~~~~~- 536 (1101)
+++.....+-+.++|.+|+.+..+.. +.++.+.+-+.- .|+ +++ +... +++|++|+++... ....+..
T Consensus 42 ~ii~t~k~~gL~Vydl~G~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~i~~~ 119 (355)
T 3amr_A 42 KLITTNKKSGLVVYSLDGKMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSMTDP 119 (355)
T ss_dssp EEEEEETTTEEEEEETTSCEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEECSCT
T ss_pred EEEEEcCCCCEEEEcCCCcEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceeecccc
Confidence 46666667889999999999998864 556666554310 111 223 3333 5789999874222 2322211
Q ss_pred -----CC-CceEEEEE--ccC-CC-EEEEeecCCCCCceEEEEeC-------CCCeeEEEecccCCcceEEEEEeCCCCE
Q 001319 537 -----PG-HWCTTMLY--SAD-GS-RLFSCGTSKDGDSFLVEWNE-------SEGTIKRTYAGFRKKSNGVVQFDTTQNH 599 (1101)
Q Consensus 537 -----~~-~~v~~~~~--s~d-~~-~l~~~~~~~~~~~~i~iwd~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~ 599 (1101)
.. ..+..+|+ ++. ++ ++++.. +++.+..|++ .+.+.++++.... .+..+...+...+
T Consensus 120 ~~pv~t~~~~pyGlcly~~~~~g~~yafV~~----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs--q~EgcvvDd~~g~ 193 (355)
T 3amr_A 120 DHPIATAINEVYGFTLYHSQKTGKYYAMVTG----KEGEFEQYELKADKNGYISGKKVRAFKMNS--QTEGMAADDEYGR 193 (355)
T ss_dssp TSCEECCCSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSCEEEEEEEEEECSS--CEEEEEEETTTTE
T ss_pred ccCcCCCCCCeeEEEEEecCCCCcEEEEEEC----CCCeEEEEEEEeCCCCcccceEEEEecCCC--CcceEEEcCCCCe
Confidence 11 45677888 774 54 444443 3678888887 2346777777654 5777889998899
Q ss_pred EEEEeCCCcEEEEECC-----CCeeeEeeccCCCCCCCCeeEE--ecCCC-EEEEEE-cCCcEEEEEcc
Q 001319 600 FLAVGEDSQIKFWDMD-----NVNILTSTDAEGGLPNLPRLRF--SKEGN-LLAVTT-ADNGFKILANA 659 (1101)
Q Consensus 600 l~~~~~dg~i~iwd~~-----~~~~~~~~~~~~~~~~v~~v~~--s~~g~-~l~~~~-~d~~i~iwd~~ 659 (1101)
|+.+-++.-|..++.+ +++.+..+....-...+..+++ .++++ +|++.+ .+..+.+||..
T Consensus 194 Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~Vydr~ 262 (355)
T 3amr_A 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYAIYDRQ 262 (355)
T ss_dssp EEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESS
T ss_pred EEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEEEEECC
Confidence 9999998777777754 3445554432221225677777 45555 566555 57799999986
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00044 Score=82.76 Aligned_cols=207 Identities=10% Similarity=-0.025 Sum_probs=126.3
Q ss_pred CCEeEEEecCCCCeEEEEc--CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 805 EAVPCIALSKNDSYVMSAT--GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
..+..++|++++..|..+. .+.|+.+++.. ......+.........|++.+.++.++++-...+.|.++++...
T Consensus 406 ~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~ 485 (699)
T 1n7d_A 406 RNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV 485 (699)
T ss_dssp TTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC
T ss_pred cceEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC
Confidence 3456788998777777765 57899999875 22222222222345678888635666666566789999998765
Q ss_pred eEEEeeccCCCCeeEEEEcCCCCEEEEEeC--CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-
Q 001319 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGA--DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 879 ~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~--Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 955 (1101)
.....+.........|++.|++.+|+.+.. .+.|...++...... . + ... .......|+|+|++..|..++
T Consensus 486 ~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~-~--l--~~~-~l~~PnGlavd~~~~~LY~aD~ 559 (699)
T 1n7d_A 486 KRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY-S--L--VTE-NIQWPNGITLDLLSGRLYWVDS 559 (699)
T ss_dssp CEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCC-E--E--SCS-SCSSCCCEEECTTTCCEEEEET
T ss_pred ceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCee-E--E--EeC-CCCCccEEEEeccCCEEEEEec
Confidence 444333333355788999997665555443 267887777643211 1 1 111 114567899999877777755
Q ss_pred -CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeC
Q 001319 956 -ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 956 -d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
.+.|.+++++.......+... ........|++..+ .++++....+.|..++..+|+.+..+.
T Consensus 560 ~~~~I~~~d~dG~~~~~~~~~~-~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~~G~~~~~i~ 622 (699)
T 1n7d_A 560 KLHSISSIDVNGGNRKTILEDE-KRLAHPFSLAVFED-KVFWTDIINEAIFSANRLTGSDVNLLA 622 (699)
T ss_dssp TTTEEEEECSSSSCCEEECCCS-SSCSSCCCCEEETT-EEEEECSTTTCEEEEETTTEEEEECCC
T ss_pred CCCeEEEEccCCCceEEEEecC-CcCCCceEeEEECC-EEEEEeCCCCeEEEEEccCCCceEEee
Confidence 678999998754332222211 11223345555433 444455667899999998888877665
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.60 E-value=0.023 Score=61.56 Aligned_cols=229 Identities=13% Similarity=0.100 Sum_probs=121.6
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceE--EEEee---CCCCCeeEEEEecCC----CCEEEEEeCC-----CcEE
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV--MTTFM---SPPPASTFLAFHPQD----NNIIAIGTED-----STIH 871 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~--~~~~~---~~~~~i~~l~~s~~~----~~~la~g~~d-----g~v~ 871 (1101)
....++|.|||+++++-.+|.|.+++ +++. +..+. ........++|+| + +.+.++-..+ +.|.
T Consensus 32 ~P~~ia~~pdG~l~V~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~p-df~~~g~lYv~~~~~~~~~~~~v~ 108 (352)
T 2ism_A 32 VPWALAFLPDGGMLIAERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHP-RFPQEPYVYAYRTVAEGGLRNQVV 108 (352)
T ss_dssp CEEEEEECTTSCEEEEETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECT-TTTTSCEEEEEEEECTTSSEEEEE
T ss_pred CceEEEEcCCCeEEEEeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECC-CCCCCCEEEEEEecCCCCCccEEE
Confidence 46789999999977776689999998 4442 22221 1234688999999 5 4444444432 6788
Q ss_pred EEEeecc-----eE-EEeec---cCCCCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCcccc-----
Q 001319 872 IYNVRVD-----EV-KSKLK---GHQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWEKRK----- 924 (1101)
Q Consensus 872 iwd~~~~-----~~-~~~~~---~h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~lwd~~~~~~~~----- 924 (1101)
.|+...+ +. +..+. +.......|+|.|||.+.++.+.. |.|.-++.+. +...
T Consensus 109 r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG-~~p~~npf~ 187 (352)
T 2ism_A 109 RLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEG-EPAPGNPFL 187 (352)
T ss_dssp EEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTS-SBCTTCTTT
T ss_pred EEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCC-CCCCCCccc
Confidence 8887643 11 22233 111234689999999877765432 4455555443 1000
Q ss_pred -----ceEEeecCCCCCCCcceEEEcC-CCCEEEEEe-CCeE------EEEEcCCce------------------eeeEe
Q 001319 925 -----SVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH-ETQL------AIYDASKME------------------RIRQW 973 (1101)
Q Consensus 925 -----~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~-d~~i------~v~d~~~~~------------------~~~~~ 973 (1101)
...+- ..+. .....++|+| ++.+.++-. .+.+ .|.-+..+. .+..+
T Consensus 188 ~~~~~~~~i~-a~G~--rnp~g~a~d~~~g~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 264 (352)
T 2ism_A 188 GRRGARPEVY-SLGH--RNPQGLAWHPKTGELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFW 264 (352)
T ss_dssp TCTTSCTTEE-EECC--SEECCCEECTTTCCEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCccEE-EEcC--CCcccEEEECCCCCEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEec
Confidence 00000 0011 2356789999 666666522 2221 233222222 11122
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeE-eeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRC-YIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1052 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s 1052 (1101)
.. ......++| .+|.++++....+.|...+++...... ......+. .....+..+++.| |+.++++
T Consensus 265 ~~----~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~-------~~~~rp~~v~~~p-dG~lyv~ 331 (352)
T 2ism_A 265 PQ----GFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETAL-------SGFGRLREVQVGP-DGALYVT 331 (352)
T ss_dssp TT----CCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEE-------ESSCCEEEEEECT-TSCEEEE
T ss_pred CC----CCCCcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheec-------ccCCCeeEEEECC-CCcEEEE
Confidence 11 234567777 567766666666777777776432100 00000000 1123567899999 6777776
Q ss_pred EE
Q 001319 1053 GL 1054 (1101)
Q Consensus 1053 ~~ 1054 (1101)
..
T Consensus 332 ~~ 333 (352)
T 2ism_A 332 TS 333 (352)
T ss_dssp EC
T ss_pred Ee
Confidence 54
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.60 E-value=0.064 Score=57.43 Aligned_cols=240 Identities=14% Similarity=0.155 Sum_probs=151.5
Q ss_pred EEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCe
Q 001319 350 MDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1101)
Q Consensus 350 v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~ 429 (1101)
.-.+|..+ ++|.-. ..++.|+|+++.+.+.... ....|..=.|-.+ +.|+..+ +..
T Consensus 71 AIMnP~~~-iiALra-g~~lQiFnle~K~klks~~--------------------~~e~VvfWkWis~-~~l~lVT-~ta 126 (494)
T 1bpo_A 71 AIMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DNA 126 (494)
T ss_dssp EEECSSSS-CEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEEEET-TEEEEEC-SSE
T ss_pred eeeCCCCc-EEEEec-CCeEEEEchHHhhhhccee--------------------cCCCceEEEecCC-CeEEEEc-CCe
Confidence 34577776 556543 6799999999887765311 1235666677644 4455443 456
Q ss_pred EEEEeecCCcccccceeeeccc----CcEEEEEEecCCCceEEEEec------CCceEEEEEcCCceeEEeecCCcCeEE
Q 001319 430 IQLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVTCG------DDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 430 i~vwd~~~~~~~~~~~~l~~h~----~~V~~l~~s~d~~~~~l~s~~------~d~~v~iwd~~~~~~~~~~~h~~~v~~ 499 (1101)
|.-|++.+...... .+..|. ..|..-..+++.+++ +++|- -.|.+.+|..+.+.-+.+.||.+.-..
T Consensus 127 VyHWsi~~~s~P~k--vFdR~~~L~~~QIInY~~d~~~kW~-~l~GI~~~~~~v~G~mQLYS~er~~sQ~ieGhaa~F~~ 203 (494)
T 1bpo_A 127 VYHWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQ 203 (494)
T ss_dssp EEEEESSSSCCCEE--EEECCGGGTTCEEEEEEECTTSSEE-EEEEEEEETTEEEEEEEEEESTTCCEEEECCSEEEEEE
T ss_pred eEEecccCCCCchh--heecchhcccceEEEEEECCCCCeE-EEEeecccCCcccceEEEeeccccccchheeeeeeeEE
Confidence 99999976433322 333443 357777788888852 32222 346788999888888899999877666
Q ss_pred EecccCCCc-cEEEEecc---CCeEEEEecCCC---Ce-----eeecc----CCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 500 ICPHHKENI-QFIFSTAI---DGKIKAWLYDTM---GS-----RVDYD----APGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 500 v~~~~~~~~-~~l~s~~~---d~~i~~wd~~~~---~~-----~~~~~----~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
+.+...... .++..+.. .+.+++-++... .. ...+. ...+...++..|+.-..+...+. -
T Consensus 204 ~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK----~ 279 (494)
T 1bpo_A 204 FKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----Y 279 (494)
T ss_dssp EECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEET----T
T ss_pred EecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEec----C
Confidence 655332222 23333333 278999988653 11 11111 12345678888888877777764 8
Q ss_pred ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeE
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~ 621 (1101)
|.|++||++++.++..-+-... .+...+......-++.....|.|.--.++....+.
T Consensus 280 G~i~lyDleTgt~i~~nrIs~~-~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivp 336 (494)
T 1bpo_A 280 GYIHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIP 336 (494)
T ss_dssp SEEEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHH
T ss_pred ceEEEEecccceeeeeecccCC-ceEEecccCCCCcEEEEccCceEEEEEEccccchh
Confidence 9999999999999887665444 55555555555666666677777666666554443
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.55 E-value=0.039 Score=59.75 Aligned_cols=228 Identities=12% Similarity=0.085 Sum_probs=127.3
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECCCce-EEEEee---CCCCCeeEEEEecC---CCCEEEEEeC---C----CcE
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMMTFK-VMTTFM---SPPPASTFLAFHPQ---DNNIIAIGTE---D----STI 870 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~-~~~~~~---~~~~~i~~l~~s~~---~~~~la~g~~---d----g~v 870 (1101)
.....++|.|||+++++-.+|.|++++. +++ .+..+. ........++++|+ ++.+.++-+. + +.|
T Consensus 29 ~~P~~ia~~pdG~l~V~e~~g~I~~~d~-~G~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v 107 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYLVTERPGRLVLISP-SGKKLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRV 107 (354)
T ss_dssp SCEEEEEEEETTEEEEEETTTEEEEECS-SCEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEE
T ss_pred CCCeEEEEcCCCeEEEEeCCCEEEEEeC-CCceEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEE
Confidence 3467899999999777777899999974 454 222221 12345889999993 2554444432 3 567
Q ss_pred EEEEeecc-------eEE-Eeecc-CCCCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCcccc----
Q 001319 871 HIYNVRVD-------EVK-SKLKG-HQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWEKRK---- 924 (1101)
Q Consensus 871 ~iwd~~~~-------~~~-~~~~~-h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~lwd~~~~~~~~---- 924 (1101)
..|+.... +.+ ..+.. .......|+|.|||.+.++.+.. |.|.-++.+. +...
T Consensus 108 ~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG-~~p~~npf 186 (354)
T 3a9g_A 108 IRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEG-RPPADNPF 186 (354)
T ss_dssp EEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTS-CCCTTSSS
T ss_pred EEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCC-CCCCCCCC
Confidence 77776643 111 11221 11234679999999877775432 3444444432 1000
Q ss_pred -ceEEeecCCCCCCCcceEEEcC-CCCEEEEEe--CC--eEEEEEcCCce------------------eeeEeccCCCCC
Q 001319 925 -SVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH--ET--QLAIYDASKME------------------RIRQWTPQDALS 980 (1101)
Q Consensus 925 -~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~--d~--~i~v~d~~~~~------------------~~~~~~~~~~h~ 980 (1101)
...+. ..+. .....++|+| ++.+.++-. +. .|.+.. .+. .+..+.. . .
T Consensus 187 ~~~~i~-a~G~--rnp~Gla~d~~~g~l~v~d~g~~~~dei~~i~--~G~nyGwp~~~g~~~~~~~~~p~~~~~~--~-~ 258 (354)
T 3a9g_A 187 PNSPIW-SYGH--RNPQGIDWHRASGVMVATEHGPVGHDEVNIIL--KGGNYGWPLATGKAGRGEFVDPVIDTGS--E-T 258 (354)
T ss_dssp TTCCEE-EECC--SCCCEEEECTTTCCEEEEECCSSSCCEEEEEC--TTCBCCTTTCCSCCCCTTSCCCSEECTT--C-C
T ss_pred CCCcEE-EEcc--CCcceEEEeCCCCCEEEEecCCCCCcEEEEec--CCCcCCCCcccCCCCCCCCcCCEeecCC--C-C
Confidence 00010 0111 3456899999 676666522 22 243332 221 1122211 1 3
Q ss_pred CCEEEEEEc-------cCCCEEEEEeCCCcEEEEeCCCC-cee--EeeCCCCcCCCcccCCCCccceEEEEEecCCCCEE
Q 001319 981 APISCAVYS-------CNSQLVFATFCDGNIGVFDADTL-RLR--CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050 (1101)
Q Consensus 981 ~~v~~v~~s-------~dg~~l~s~~~dg~i~vwd~~~~-~~~--~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l 1050 (1101)
.....++|. .+|.++++....+.|...+++.. +.. ..+. ......+..+++.| |+.++
T Consensus 259 ~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~-----------~~~~~rp~~v~~~p-DG~ly 326 (354)
T 3a9g_A 259 WAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFF-----------KNVFGRLRDVVIDD-DGGIL 326 (354)
T ss_dssp CCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEEC-----------TTTSCCEEEEEECT-TSCEE
T ss_pred cCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeec-----------cCCCCCeeEEEECC-CCcEE
Confidence 457788883 57777777777788888888753 321 1111 01133567899999 67777
Q ss_pred EEEE
Q 001319 1051 AIGL 1054 (1101)
Q Consensus 1051 ~s~~ 1054 (1101)
++..
T Consensus 327 v~~~ 330 (354)
T 3a9g_A 327 ISTS 330 (354)
T ss_dssp EEEC
T ss_pred EEEe
Confidence 7664
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.013 Score=61.04 Aligned_cols=164 Identities=9% Similarity=0.024 Sum_probs=107.5
Q ss_pred EEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCcccccccc-ccCCccEEEEEE---ccCCCEEE
Q 001319 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF-KDVPISVSRVAW---SPDGNYVG 422 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~h~~~v~~~~~---spdg~~la 422 (1101)
-.+++|.+.+..++++.-..++|..|+...+..... .+ ..... ......+..|.| .|+|++++
T Consensus 15 PE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~-~~------------~~~s~~g~~~~~~sGl~~~~~D~~grL~v 81 (334)
T 2p9w_A 15 PEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNV-VI------------DGASSNGDGEQQMSGLSLLTHDNSKRLFA 81 (334)
T ss_dssp CSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEE-CC------------TTTCCSSCCSEEEEEEEESSSSSCCEEEE
T ss_pred CcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEE-ec------------CCccccCCCcceeeEEEEeccCCCCcEEE
Confidence 346788886555666655789999999875543221 00 00000 011235689999 68988888
Q ss_pred EEEC-------------CCeEEEEeec---CCcccccceeeecc-----------cCcEEEEEEecCCCceEEEEecCC-
Q 001319 423 VAFT-------------KHLIQLYSYA---GSNDLRQHSQIDAH-----------VGAVNDLAFAYPNKLLCVVTCGDD- 474 (1101)
Q Consensus 423 s~~~-------------d~~i~vwd~~---~~~~~~~~~~l~~h-----------~~~V~~l~~s~d~~~~~l~s~~~d- 474 (1101)
+... +..|..||+. +++.+... .|... ......++..++|+ ..++++.-
T Consensus 82 v~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~-dL~~~~~~~~~~~g~~~~~~nDvavD~~Gn--aYVt~s~~~ 158 (334)
T 2p9w_A 82 VMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSV-NFEKVQDEFEKKAGKRPFGVVQSAQDRDGN--SYVAFALGM 158 (334)
T ss_dssp EEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEE-ESHHHHHHHHHHHSSCCEEEEEEEECTTSC--EEEEEEESS
T ss_pred EEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEe-cCccccccccccccccccCCceeEECCCCC--EEEeCCCCC
Confidence 6542 6779999999 77665422 22221 13488999999999 77878877
Q ss_pred ceEEEEEcCCceeEEeecC------CcCeEEEecccCCCccEEEEeccCCeEEEEecCCC
Q 001319 475 KLIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1101)
Q Consensus 475 ~~v~iwd~~~~~~~~~~~h------~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 528 (1101)
+.|...+.+|+.+..+... ....+.|+++| +|..|++....|.|..+|+...
T Consensus 159 ~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~p--dg~~Liv~~~~g~L~~fD~~~p 216 (334)
T 2p9w_A 159 PAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDP--HSNKLIAFGGPRALTAFDVSKP 216 (334)
T ss_dssp CEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEET--TTTEEEEESSSSSEEEEECSSS
T ss_pred CeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeC--CCCEEEEEcCCCeEEEEcCCCC
Confidence 8888888777755443211 11256889877 5567777766999999998853
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.019 Score=59.77 Aligned_cols=204 Identities=11% Similarity=0.065 Sum_probs=124.7
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEE-eeC----CCC--CeeEEEE---ecCCCCEEEEEe--------
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTT-FMS----PPP--ASTFLAF---HPQDNNIIAIGT-------- 865 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~-~~~----~~~--~i~~l~~---s~~~~~~la~g~-------- 865 (1101)
.-.+++|.+....+..++ .++|..||...+..... +.. ... .+..+.| .| +++++++..
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~-~grL~vv~~~~~af~~~ 92 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDN-SKRLFAVMKNAKSFNFA 92 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSS-CCEEEEEEEETTTTCTT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCC-CCcEEEEEccccccccc
Confidence 345788877555555554 89999999986654433 221 011 3578999 68 678887644
Q ss_pred -----CCCcEEEEEee---cceEEEeec--cC-----------CCCeeEEEEcCCCCEEEEEeCC-CcEEEEECCCCccc
Q 001319 866 -----EDSTIHIYNVR---VDEVKSKLK--GH-----------QKRITGLAFSTSLNILVSSGAD-AQLCVWSIDTWEKR 923 (1101)
Q Consensus 866 -----~dg~v~iwd~~---~~~~~~~~~--~h-----------~~~V~~l~~s~d~~~l~s~s~D-g~v~lwd~~~~~~~ 923 (1101)
.+..|..||+. +++.+.... +. ......++..++|+..++++.. +.|...+.+... .
T Consensus 93 g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-~ 171 (334)
T 2p9w_A 93 DQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-V 171 (334)
T ss_dssp SCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-E
T ss_pred ccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-E
Confidence 26789999999 777654432 11 1348899999999999998887 776666665432 2
Q ss_pred cceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCcee--eeEec-cCCCCCCCEEE-EEEccCCCE-EEE
Q 001319 924 KSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMER--IRQWT-PQDALSAPISC-AVYSCNSQL-VFA 997 (1101)
Q Consensus 924 ~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~--~~~~~-~~~~h~~~v~~-v~~s~dg~~-l~s 997 (1101)
................+.++++|||..|++. ..+.+..+|+.+... +..-. +.......... +..-.+|+. |++
T Consensus 172 ~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~ 251 (334)
T 2p9w_A 172 STFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVG 251 (334)
T ss_dssp EEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEE
T ss_pred eeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEE
Confidence 2222222222222457799999999988884 388999999884322 11110 11011222344 344457887 445
Q ss_pred EeCCCcEEEEeCCC
Q 001319 998 TFCDGNIGVFDADT 1011 (1101)
Q Consensus 998 ~~~dg~i~vwd~~~ 1011 (1101)
....+.+.+.+.+.
T Consensus 252 ~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 252 ARAPYAISFRSWDN 265 (334)
T ss_dssp EETTEEEEEECSST
T ss_pred cCCCCEEEEECCCC
Confidence 55566666665544
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=97.48 E-value=0.16 Score=54.34 Aligned_cols=261 Identities=10% Similarity=0.117 Sum_probs=155.5
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
...|.|.|+..+..+....- ...+.-.+|..+.++.-. ..++.|+|+++...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIiDl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnle~K~klks~~~~e---~VvfWkWis~~- 117 (494)
T 1bpo_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (494)
T ss_dssp CCEEEEEETTSTTSCEEEEC----CCSEEEECSSSSCEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEEEETT-
T ss_pred CCeEEEEECCCCCcceeccc----ccceeeeCCCCcEEEEec-CCeEEEEchHHhhhhcceecCC---CceEEEecCCC-
Confidence 44788899988655433222 122355788887777654 7899999999999998887654 35566665443
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
.|+..+ +..|+-|++.....+.+.+..+..-
T Consensus 118 ~l~lVT-~taVyHWsi~~~s~P~kvFdR~~~L------------------------------------------------ 148 (494)
T 1bpo_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 148 (494)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred eEEEEc-CCeeEEecccCCCCchhheecchhc------------------------------------------------
Confidence 455444 4589999987654444444433221
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEeec-------CCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-------NGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 795 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-------dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1101)
....|.....+++.++++..|- .|.+.+|..+.....+
T Consensus 149 -------------~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~~sQ~---------------------- 193 (494)
T 1bpo_A 149 -------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQP---------------------- 193 (494)
T ss_dssp -------------TTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTCCEEE----------------------
T ss_pred -------------ccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccccccch----------------------
Confidence 1223334444444444443321 2666777654321100
Q ss_pred eccCCCCCCCCEeEEEecCC---CCeEEEEc----CCeEEEEECCCc--------eEEEEeeC----CCCCeeEEEEecC
Q 001319 796 NDVAGVNLEEAVPCIALSKN---DSYVMSAT----GGKISLFNMMTF--------KVMTTFMS----PPPASTFLAFHPQ 856 (1101)
Q Consensus 796 ~~~~~~~~~~~v~~~~~s~d---g~~la~~~----dg~i~vwd~~~~--------~~~~~~~~----~~~~i~~l~~s~~ 856 (1101)
+. +|......+.+..+ ..+++.+. .+++++.++... +....+.- ..+-..++..|+
T Consensus 194 --ie--Ghaa~F~~~~~~g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~- 268 (494)
T 1bpo_A 194 --IE--GHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE- 268 (494)
T ss_dssp --EC--CSEEEEEEEECTTCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEET-
T ss_pred --he--eeeeeeEEEecCCCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecc-
Confidence 01 12222222222111 11333332 378999998532 11111111 123356788888
Q ss_pred CCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Q 001319 857 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 857 ~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
.-.++..-+.-|.|++||+.++.++..-+-....|..-+......=++.....|.|.--.++...
T Consensus 269 kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ 333 (494)
T 1bpo_A 269 KHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEEN 333 (494)
T ss_dssp TTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTT
T ss_pred cCCEEEEEecCceEEEEecccceeeeeecccCCceEEecccCCCCcEEEEccCceEEEEEEcccc
Confidence 67788899999999999999999988776667777776666665666667788888777776644
|
| >2xtc_A F-box-like/WD repeat-containing protein TBL1X; transcription; 2.22A {Homo sapiens} PDB: 2xte_A 2xtd_A | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00013 Score=58.06 Aligned_cols=35 Identities=34% Similarity=0.468 Sum_probs=32.9
Q ss_pred CCcchHHHHHHHHHHHhhcCHHHHHHHHHHhcCCC
Q 001319 1 MSSLSRELVFLILQFLEEEKFKESVHKLEKESGFF 35 (1101)
Q Consensus 1 ~~~~~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~ 35 (1101)
|+....||+.||..||.|.||..||.+|.+||+|.
T Consensus 1 msitsdevN~LI~RYLqEsGf~hsAf~f~~Es~i~ 35 (90)
T 2xtc_A 1 MSITSDEVNFLVYRYLQESGFSHSAFTFGIESHIS 35 (90)
T ss_dssp -CCCHHHHHHHHHHHHHHTTCHHHHHHHHHHTTGG
T ss_pred CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhcCC
Confidence 88999999999999999999999999999999985
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=97.39 E-value=0.066 Score=57.92 Aligned_cols=230 Identities=16% Similarity=0.104 Sum_probs=119.5
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCc-eeccccceeecccccCccccccccccCCccEEEEEEccC---CCE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRD-RLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~-~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd---g~~ 420 (1101)
...++|+|.|||+ |+++ ..+|.|.+++ .+++ .+.. + . +..........|+|+|| +.+
T Consensus 29 ~~P~~ia~~pdG~-l~V~-e~~g~I~~~d-~~G~~~~~~--~------------~--v~~~g~~g~~gia~~pdf~~~g~ 89 (354)
T 3a9g_A 29 EVPWSIAPLGGGR-YLVT-ERPGRLVLIS-PSGKKLVAS--F------------D--VANVGEAGLLGLALHPEFPKKSW 89 (354)
T ss_dssp SCEEEEEEEETTE-EEEE-ETTTEEEEEC-SSCEEEEEE--C------------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCeEEEEcCCCe-EEEE-eCCCEEEEEe-CCCceEeec--c------------c--eeecCCCceeeEEeCCCCCcCCE
Confidence 4689999999998 5554 5669999887 3443 1110 0 0 11222456889999998 555
Q ss_pred EEEEEC----C----CeEEEEeecCCc-cc---ccc-eeee-cccCcEEEEEEecCCCceEEEEecC-------------
Q 001319 421 VGVAFT----K----HLIQLYSYAGSN-DL---RQH-SQID-AHVGAVNDLAFAYPNKLLCVVTCGD------------- 473 (1101)
Q Consensus 421 las~~~----d----~~i~vwd~~~~~-~~---~~~-~~l~-~h~~~V~~l~~s~d~~~~~l~s~~~------------- 473 (1101)
|.++.. + ..|..|+...+. .+ +.+ ..+. +.......++|.|||. +.++.+.
T Consensus 90 lyv~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~--Lyvt~G~~~~~~~~~d~~~~ 167 (354)
T 3a9g_A 90 VYLYASYFAEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGM--LYITTGDAADPRLAQDLSSL 167 (354)
T ss_dssp EEEEEEEECGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSC--EEEECCCTTCGGGGTCTTCC
T ss_pred EEEEEeccCCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCc--EEEEECCCCCCccccCCCCC
Confidence 554433 3 568888876541 01 111 0121 1111246799999997 4555332
Q ss_pred CceEEEEEcCCce--------eEE-eecCCcCeEEEecccCCCccEEEEeccCC---eEEEEecCCCC------------
Q 001319 474 DKLIKVWELSGRK--------LFN-FEGHEAPVYSICPHHKENIQFIFSTAIDG---KIKAWLYDTMG------------ 529 (1101)
Q Consensus 474 d~~v~iwd~~~~~--------~~~-~~~h~~~v~~v~~~~~~~~~~l~s~~~d~---~i~~wd~~~~~------------ 529 (1101)
.+.|.-.+.+|+. ... -.++. ....++|.+. ++.+.++-.... .|.+. ..+.
T Consensus 168 ~G~I~ri~~dG~~p~~npf~~~~i~a~G~r-np~Gla~d~~-~g~l~v~d~g~~~~dei~~i--~~G~nyGwp~~~g~~~ 243 (354)
T 3a9g_A 168 AGKILRVDEEGRPPADNPFPNSPIWSYGHR-NPQGIDWHRA-SGVMVATEHGPVGHDEVNII--LKGGNYGWPLATGKAG 243 (354)
T ss_dssp SSEEEEECTTSCCCTTSSSTTCCEEEECCS-CCCEEEECTT-TCCEEEEECCSSSCCEEEEE--CTTCBCCTTTCCSCCC
T ss_pred CeEEEEEcCCCCCCCCCCCCCCcEEEEccC-CcceEEEeCC-CCCEEEEecCCCCCcEEEEe--cCCCcCCCCcccCCCC
Confidence 2456556655541 111 12343 3457788763 234443322211 13222 2111
Q ss_pred ------eeeeccCCCCceEEEEEc-------cCCCEEEEeecCCCCCceEEEEeCCCC-eeE--EEecccCCcceEEEEE
Q 001319 530 ------SRVDYDAPGHWCTTMLYS-------ADGSRLFSCGTSKDGDSFLVEWNESEG-TIK--RTYAGFRKKSNGVVQF 593 (1101)
Q Consensus 530 ------~~~~~~~~~~~v~~~~~s-------~d~~~l~~~~~~~~~~~~i~iwd~~~~-~~~--~~~~~~~~~~v~~~~~ 593 (1101)
....+.........++|. .+|.++++.. ..+.|...++... +.. ..+.......+..+++
T Consensus 244 ~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G~l~v~~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~ 319 (354)
T 3a9g_A 244 RGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRGWLLIACL----RGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVI 319 (354)
T ss_dssp CTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTTEEEEEET----TTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEE
T ss_pred CCCCcCCEeecCCCCcCCcceEEECCCCCcccCCcEEEEEc----CCCEEEEEEECCCCcccceeeeccCCCCCeeEEEE
Confidence 111221123357788884 4666655543 2567877777643 322 2232111235677888
Q ss_pred eCCCCEEEEE
Q 001319 594 DTTQNHFLAV 603 (1101)
Q Consensus 594 ~~~~~~l~~~ 603 (1101)
.|||..+++.
T Consensus 320 ~pDG~lyv~~ 329 (354)
T 3a9g_A 320 DDDGGILIST 329 (354)
T ss_dssp CTTSCEEEEE
T ss_pred CCCCcEEEEE
Confidence 8888655554
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.065 Score=58.00 Aligned_cols=108 Identities=17% Similarity=0.199 Sum_probs=62.6
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC---CCE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNY 420 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd---g~~ 420 (1101)
-...+.|+|.|||+ ++++ ..+|.|.+++ .++... + .+. . +..........|+|+|| +.+
T Consensus 30 l~~P~~ia~~pdG~-l~V~-e~~g~I~~i~--~g~~~~---~--~~~-------~--v~~~g~~~p~gia~~pdf~~~g~ 91 (352)
T 2ism_A 30 LEVPWALAFLPDGG-MLIA-ERPGRIRLFR--EGRLST---Y--AEL-------S--VYHRGESGLLGLALHPRFPQEPY 91 (352)
T ss_dssp CSCEEEEEECTTSC-EEEE-ETTTEEEEEE--TTEEEE---E--EEC-------C--CCCSTTCSEEEEEECTTTTTSCE
T ss_pred CCCceEEEEcCCCe-EEEE-eCCCeEEEEE--CCCccE---e--ecc-------e--EeecCCCCceeEEECCCCCCCCE
Confidence 34688999999998 5554 5679999988 343211 0 000 0 12223457889999998 555
Q ss_pred EEEEEC-C-----CeEEEEeecCCccc--ccc-eeee---cccCcEEEEEEecCCCceEEEEe
Q 001319 421 VGVAFT-K-----HLIQLYSYAGSNDL--RQH-SQID---AHVGAVNDLAFAYPNKLLCVVTC 471 (1101)
Q Consensus 421 las~~~-d-----~~i~vwd~~~~~~~--~~~-~~l~---~h~~~V~~l~~s~d~~~~~l~s~ 471 (1101)
|.++.. + +.|..|+...+..- +.+ ..+. +.......++|.|||. +.++.
T Consensus 92 lYv~~~~~~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~--Lyv~~ 152 (352)
T 2ism_A 92 VYAYRTVAEGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGM--LYVTT 152 (352)
T ss_dssp EEEEEEECTTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSC--EEEEC
T ss_pred EEEEEecCCCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCC--EEEEE
Confidence 555443 2 57888888754211 111 1122 1111236899999996 45543
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.025 Score=59.96 Aligned_cols=232 Identities=13% Similarity=0.103 Sum_probs=121.8
Q ss_pred CCCeEEEEc-C------CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC-----CcEEEEEeecce---
Q 001319 815 NDSYVMSAT-G------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED-----STIHIYNVRVDE--- 879 (1101)
Q Consensus 815 dg~~la~~~-d------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d-----g~v~iwd~~~~~--- 879 (1101)
++.+++.|+ . ..+.+||+.+.+-...-..........+... ++.+++.|+.+ ..+.+||..+++
T Consensus 14 ~~~i~~~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~ 92 (301)
T 2vpj_A 14 NEVLLVVGGFGSQQSPIDVVEKYDPKTQEWSFLPSITRKRRYVASVSL-HDRIYVIGGYDGRSRLSSVECLDYTADEDGV 92 (301)
T ss_dssp CEEEEEECCEETTTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTCCTTCC
T ss_pred CCEEEEEeCccCCCcceeEEEEEcCCCCeEEeCCCCChhhccccEEEE-CCEEEEEcCCCCCccCceEEEEECCCCCCCe
Confidence 455555554 2 3589999887653322111111111222223 66788888765 468899987654
Q ss_pred --EEEeeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEE
Q 001319 880 --VKSKLKGHQKRITGLAFSTSLNILVSSGADA-----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952 (1101)
Q Consensus 880 --~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 952 (1101)
.+..+......-..+. .+++.++.|+.++ .+.+||..+.+....... +.. ..-..++ .-+++.++
T Consensus 93 W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~---r~~~~~~-~~~~~iyv 164 (301)
T 2vpj_A 93 WYSVAPMNVRRGLAGATT--LGDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDM--QTA---REGAGLV-VASGVIYC 164 (301)
T ss_dssp CEEECCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEEC--SSC---CBSCEEE-EETTEEEE
T ss_pred eEECCCCCCCccceeEEE--ECCEEEEEcccCCCcccceEEEEcCCCCeEEECCCC--CCC---cccceEE-EECCEEEE
Confidence 2322221111122222 2677777777543 588899887654332211 111 1111222 23666666
Q ss_pred EEe------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeeCCC
Q 001319 953 VVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPS 1021 (1101)
Q Consensus 953 ~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~ 1021 (1101)
.|. ...+.+||..+.+-...-..... ......+. -++++++.|+.+ ..+.+||+.+.+....-.
T Consensus 165 ~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~-- 239 (301)
T 2vpj_A 165 LGGYDGLNILNSVEKYDPHTGHWTNVTPMATK-RSGAGVAL--LNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTS-- 239 (301)
T ss_dssp ECCBCSSCBCCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECC--
T ss_pred ECCCCCCcccceEEEEeCCCCcEEeCCCCCcc-cccceEEE--ECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCC--
Confidence 643 25689999887655433222111 11122222 267777777764 468999999876544321
Q ss_pred CcCCCcccCCCCccceEEEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCcccc
Q 001319 1022 TYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1022 ~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D-----g~v~iWd~~~~~~~~~~ 1073 (1101)
.+.. .... ..+.. ++.+++.|+.+ ..+.+||+.+.+ |..
T Consensus 240 --~p~~-----r~~~-~~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 283 (301)
T 2vpj_A 240 --MTTP-----RCYV-GATVL---RGRLYAIAGYDGNSLLSSIECYDPIIDS--WEV 283 (301)
T ss_dssp --CSSC-----CBSC-EEEEE---TTEEEEECCBCSSSBEEEEEEEETTTTE--EEE
T ss_pred --CCCc-----ccce-eEEEE---CCEEEEEcCcCCCcccccEEEEcCCCCe--EEE
Confidence 1111 1111 11222 57788888876 357888887755 554
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=97.16 E-value=0.097 Score=56.63 Aligned_cols=233 Identities=12% Similarity=0.106 Sum_probs=125.2
Q ss_pred CEeEEEecCCCC-eEEEEcCCeEEEEECCCceEEEEee-------CCCCCeeEEEEecC---CCCEEEEEeC-------C
Q 001319 806 AVPCIALSKNDS-YVMSATGGKISLFNMMTFKVMTTFM-------SPPPASTFLAFHPQ---DNNIIAIGTE-------D 867 (1101)
Q Consensus 806 ~v~~~~~s~dg~-~la~~~dg~i~vwd~~~~~~~~~~~-------~~~~~i~~l~~s~~---~~~~la~g~~-------d 867 (1101)
....++|.|||+ ++++-..|.|++++.. +.....+. ........++++|+ ++.+.++-+. .
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~~~ 97 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGKAG 97 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSCEE
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCCce
Confidence 467899999999 7776668999999853 33221111 11345688999993 3444444332 2
Q ss_pred CcEEEEEeecc-------eEE-Eeecc---CCCCeeEEEEcCCCCEEEEEeCC-------------CcEEEEECCCCc--
Q 001319 868 STIHIYNVRVD-------EVK-SKLKG---HQKRITGLAFSTSLNILVSSGAD-------------AQLCVWSIDTWE-- 921 (1101)
Q Consensus 868 g~v~iwd~~~~-------~~~-~~~~~---h~~~V~~l~~s~d~~~l~s~s~D-------------g~v~lwd~~~~~-- 921 (1101)
..|..|++..+ +.+ ..+.. .......|+|.|||.+.++.+.. |.|.-++.+..-
T Consensus 98 ~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~p~ 177 (353)
T 2g8s_A 98 TAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEIPD 177 (353)
T ss_dssp EEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCCCT
T ss_pred eEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCCCC
Confidence 35666666432 111 11211 11124679999999766665442 456666655320
Q ss_pred ----------cccceEEeecCCCCCCCcceEEEcC-CCCEEEEEe--CCeEEEEEcCCcee-------------------
Q 001319 922 ----------KRKSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVH--ETQLAIYDASKMER------------------- 969 (1101)
Q Consensus 922 ----------~~~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~--d~~i~v~d~~~~~~------------------- 969 (1101)
...... .+. .....++|+| +|.+.++-. ++.=.|.-+..+..
T Consensus 178 ~npf~~~~~~~~~i~a----~G~--rnp~gl~~d~~~g~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~~ 251 (353)
T 2g8s_A 178 DNPFIKESGVRAEIWS----YGI--RNPQGMAMNPWSNALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIPE 251 (353)
T ss_dssp TCTTTTSTTSCTTEEE----ECC--SEEEEEEEETTTTEEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCTT
T ss_pred CCCCcCCCCCCccEEE----EcC--cCccceEEECCCCCEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccCc
Confidence 000000 111 3467899999 566555522 22223322222211
Q ss_pred ------------eeEeccCCCCCCCEEEEEEcc-------CCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccC
Q 001319 970 ------------IRQWTPQDALSAPISCAVYSC-------NSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1030 (1101)
Q Consensus 970 ------------~~~~~~~~~h~~~v~~v~~s~-------dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
+..+. +...+..++|.. +|+++++....+.|...+++.++...... +.
T Consensus 252 ~~~~~~~~~~~P~~~~~----~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~---~~------ 318 (353)
T 2g8s_A 252 AKGEIVAGTEQPVFYWK----DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGR---IL------ 318 (353)
T ss_dssp CCBSSCTTSCCCSEEES----SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEE---ES------
T ss_pred ccCCCCCCccCCeEEeC----CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEE---cc------
Confidence 01111 123566777753 57777777777888888887654332211 00
Q ss_pred CCCccceEEEEEecCCCCEEEEEE-CCCeE
Q 001319 1031 GSQTVYPLVVAAHPLEPNQFAIGL-TDGSV 1059 (1101)
Q Consensus 1031 h~~~~~~~~l~~~p~d~~~l~s~~-~Dg~v 1059 (1101)
......+..+++.| |+.++++.. .+|.|
T Consensus 319 ~~~~~rp~~v~~~p-dG~lyv~td~~~g~I 347 (353)
T 2g8s_A 319 TDRGQRIRDVRTGP-DGYLYVLTDESSGEL 347 (353)
T ss_dssp GGGCCCEEEEEECT-TSCEEEEECSTTEEE
T ss_pred cCCCCceeEEEECC-CCcEEEEEeCCCCEE
Confidence 01123577899999 688777543 34443
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.035 Score=59.01 Aligned_cols=233 Identities=12% Similarity=0.072 Sum_probs=121.1
Q ss_pred CCeEEEEc---CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC----CcEEEEEeecceEEEeeccCC
Q 001319 816 DSYVMSAT---GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED----STIHIYNVRVDEVKSKLKGHQ 888 (1101)
Q Consensus 816 g~~la~~~---dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~v~iwd~~~~~~~~~~~~h~ 888 (1101)
+.+++.|+ ...+.+||..+.+-...-..........+..- ++.+++.|+.+ ..+.+||..+++-...-....
T Consensus 12 ~~l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~-~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~ 90 (306)
T 3ii7_A 12 DYRIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVFW-DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPT 90 (306)
T ss_dssp CEEEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEEE-TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSS
T ss_pred ceEEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEEE-CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCc
Confidence 34555554 25699999987653322111111111112223 66788888765 678889988764322211111
Q ss_pred CCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-------
Q 001319 889 KRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH------- 955 (1101)
Q Consensus 889 ~~V~~l~~s~d~~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~------- 955 (1101)
......+..-+++.++.|+.+ ..+.+||..+.+......+ +.. ..-..++ .-+++.++.|.
T Consensus 91 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~--p~~---r~~~~~~-~~~~~iyv~GG~~~~~~~ 164 (306)
T 3ii7_A 91 PRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSM--LTQ---RCSHGMV-EANGLIYVCGGSLGNNVS 164 (306)
T ss_dssp CCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCC--SSC---CBSCEEE-EETTEEEEECCEESCTTT
T ss_pred cccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCC--cCC---cceeEEE-EECCEEEEECCCCCCCCc
Confidence 111112222367788888765 4588999988653222111 111 1111222 23566666542
Q ss_pred ---CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeeCCCCcCCCc
Q 001319 956 ---ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPS 1027 (1101)
Q Consensus 956 ---d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~ 1027 (1101)
-..+.+||..+.+-...-..... ...-..+.+ ++++++.|+.+ ..+.+||+.+.+-...-. .+..
T Consensus 165 ~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~ 237 (306)
T 3ii7_A 165 GRVLNSCEVYDPATETWTELCPMIEA-RKNHGLVFV--KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSP----MPWK 237 (306)
T ss_dssp CEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEEE--TTEEEEECCEETTEEBCCEEEEETTTTEEEECCC----CSCC
T ss_pred ccccceEEEeCCCCCeEEECCCccch-hhcceEEEE--CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCC----CCCC
Confidence 34588999987754433222111 111222222 67777777654 468999998876443211 1111
Q ss_pred ccCCCCccceEEEEEecCCCCEEEEEECC-----CeEEEEeCCCCCCcccc
Q 001319 1028 VLNGSQTVYPLVVAAHPLEPNQFAIGLTD-----GSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1028 ~~~h~~~~~~~~l~~~p~d~~~l~s~~~D-----g~v~iWd~~~~~~~~~~ 1073 (1101)
.... ..+.. ++.+++.|+.+ ..+.+||+.+.+ |..
T Consensus 238 -----r~~~-~~~~~---~~~i~v~GG~~~~~~~~~~~~yd~~~~~--W~~ 277 (306)
T 3ii7_A 238 -----GVTV-KCAAV---GSIVYVLAGFQGVGRLGHILEYNTETDK--WVA 277 (306)
T ss_dssp -----BSCC-EEEEE---TTEEEEEECBCSSSBCCEEEEEETTTTE--EEE
T ss_pred -----ccce-eEEEE---CCEEEEEeCcCCCeeeeeEEEEcCCCCe--EEe
Confidence 1111 11222 57788888865 468888888765 544
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.071 Score=56.98 Aligned_cols=202 Identities=12% Similarity=0.122 Sum_probs=121.2
Q ss_pred EeEEEecCCCCeEEEE-------------cCCeEEEEECCC--ceEE-EEeeC-----CCCCeeEEEEecC-CC--CEEE
Q 001319 807 VPCIALSKNDSYVMSA-------------TGGKISLFNMMT--FKVM-TTFMS-----PPPASTFLAFHPQ-DN--NIIA 862 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~-------------~dg~i~vwd~~~--~~~~-~~~~~-----~~~~i~~l~~s~~-~~--~~la 862 (1101)
...+++.|+|..++++ .+|.|.++|.++ ++.. ..+.+ .......+.+.++ ++ .+++
T Consensus 52 ~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V 131 (355)
T 3sre_A 52 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLV 131 (355)
T ss_dssp CCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred cceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence 4566778888777665 378899999873 2321 12222 1235666776552 23 2444
Q ss_pred EEeC--CCcEEEEEeecc----eEEEeeccC-CCCeeEEEEcCCCCEEEEEeC---C------------CcEEEEECCCC
Q 001319 863 IGTE--DSTIHIYNVRVD----EVKSKLKGH-QKRITGLAFSTSLNILVSSGA---D------------AQLCVWSIDTW 920 (1101)
Q Consensus 863 ~g~~--dg~v~iwd~~~~----~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~---D------------g~v~lwd~~~~ 920 (1101)
+-.. +.+|.+|++..+ ..+..+.+. -...+++++.++|.+.++... | ..=.+|.+..+
T Consensus 132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~ 211 (355)
T 3sre_A 132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN 211 (355)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence 4333 568899988753 223344432 245789999999998887641 1 22344444443
Q ss_pred ccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCC-cee--eeEeccCCCCCCCEEEEEEcc-CCCE
Q 001319 921 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASK-MER--IRQWTPQDALSAPISCAVYSC-NSQL 994 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~-~~~--~~~~~~~~~h~~~v~~v~~s~-dg~~ 994 (1101)
+.. ...-.. .....++|+||++.|.+++ .+.|..|++.. +.. ...+.. ......+++.+ +|.+
T Consensus 212 ~~~-~~~~~l------~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~----~g~PDGi~vD~e~G~l 280 (355)
T 3sre_A 212 DVR-VVAEGF------DFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSF----DTLVDNISVDPVTGDL 280 (355)
T ss_dssp CCE-EEEEEE------SSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEC----SSEEEEEEECTTTCCE
T ss_pred eEE-EeecCC------cccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeC----CCCCceEEEeCCCCcE
Confidence 221 111111 4567899999999988865 68899999863 322 223321 46678999999 5998
Q ss_pred EEEEeCC-CcEEEEeCC--CCceeEeeC
Q 001319 995 VFATFCD-GNIGVFDAD--TLRLRCYIA 1019 (1101)
Q Consensus 995 l~s~~~d-g~i~vwd~~--~~~~~~~~~ 1019 (1101)
.+++..+ +.|..|+.. .+..+.++.
T Consensus 281 wva~~~~g~~v~~~~P~~~~~s~v~rI~ 308 (355)
T 3sre_A 281 WVGCHPNGMRIFFYDAENPPGSEVLRIQ 308 (355)
T ss_dssp EEEEESCHHHHHSCCTTSCCCEEEEEEE
T ss_pred EEEecCCceEEEEECCCCCCCCEEEEEE
Confidence 8876544 345555544 355666665
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=97.03 E-value=0.48 Score=50.57 Aligned_cols=197 Identities=12% Similarity=0.081 Sum_probs=111.1
Q ss_pred cEEEEEEccCCCEEEEEE------------CCCeEEEEeecCCcc-cccceeeec-----ccCcEEEEEEec--CCCceE
Q 001319 408 SVSRVAWSPDGNYVGVAF------------TKHLIQLYSYAGSND-LRQHSQIDA-----HVGAVNDLAFAY--PNKLLC 467 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~------------~d~~i~vwd~~~~~~-~~~~~~l~~-----h~~~V~~l~~s~--d~~~~~ 467 (1101)
..-.++..|+|..+.+++ .+|.|.++|.++... ...+ .+.+ .......+.+.+ ++...+
T Consensus 51 G~EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~~~L 129 (355)
T 3sre_A 51 GSEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSEL-EIIGNTLDISSFNPHGISTFIDDDNTVYL 129 (355)
T ss_dssp CCCEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEEC-EEECSSCCGGGCCEEEEEEEECTTCCEEE
T ss_pred CcceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEEE-EccCCCCCcCceeeeeeEEEECCCCcEEE
Confidence 445666788886666552 689999999974321 2222 2333 234677778766 454223
Q ss_pred EEEecC--CceEEEEE--cCCcee---EEeecC-CcCeEEEecccCCCccEEEEecc-----------------CCeEEE
Q 001319 468 VVTCGD--DKLIKVWE--LSGRKL---FNFEGH-EAPVYSICPHHKENIQFIFSTAI-----------------DGKIKA 522 (1101)
Q Consensus 468 l~s~~~--d~~v~iwd--~~~~~~---~~~~~h-~~~v~~v~~~~~~~~~~l~s~~~-----------------d~~i~~ 522 (1101)
+++-.. +.+|.+|+ ..+... .++.+. -...+.+++.+ +|.+.++... .|.|..
T Consensus 130 ~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~--~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr 207 (355)
T 3sre_A 130 LVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTY 207 (355)
T ss_dssp EEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEE
T ss_pred EEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeC--CCCEEecCCcEeCCcccccchhhccCCccEEEE
Confidence 333332 56888888 333332 333332 23467777755 5666665431 234444
Q ss_pred EecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC-Cee--EEEecccCCcceEEEEEeC-CCC
Q 001319 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE-GTI--KRTYAGFRKKSNGVVQFDT-TQN 598 (1101)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~-~~~--~~~~~~~~~~~v~~~~~~~-~~~ 598 (1101)
++ .++.. .+...-...+.++|+||++.+..+.. ..+.|+.|++.. ++. .+.+.. ......+++.+ +|+
T Consensus 208 ~d--~~~~~-~~~~~l~~pNGia~spDg~~lYvadt---~~~~I~~~~~~~~g~l~~~~~~~~--~g~PDGi~vD~e~G~ 279 (355)
T 3sre_A 208 YS--PNDVR-VVAEGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSF--DTLVDNISVDPVTGD 279 (355)
T ss_dssp EC--TTCCE-EEEEEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEEC--SSEEEEEEECTTTCC
T ss_pred EE--CCeEE-EeecCCcccCcceECCCCCEEEEEeC---CCCeEEEEEECCCCcEecCEEEeC--CCCCceEEEeCCCCc
Confidence 44 33222 22222235689999999998887754 367899999763 332 223321 22456688999 588
Q ss_pred EEEEEeCC-CcEEEEECC
Q 001319 599 HFLAVGED-SQIKFWDMD 615 (1101)
Q Consensus 599 ~l~~~~~d-g~i~iwd~~ 615 (1101)
..+++..+ +.|..|+..
T Consensus 280 lwva~~~~g~~v~~~~P~ 297 (355)
T 3sre_A 280 LWVGCHPNGMRIFFYDAE 297 (355)
T ss_dssp EEEEEESCHHHHHSCCTT
T ss_pred EEEEecCCceEEEEECCC
Confidence 77766533 344444443
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.98 E-value=0.041 Score=59.00 Aligned_cols=110 Identities=13% Similarity=0.133 Sum_probs=81.7
Q ss_pred EEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCC----CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE-----
Q 001319 810 IALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV----- 880 (1101)
Q Consensus 810 ~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~----- 880 (1101)
.....+|.-++.+.++.||.-++......+.+... -..|..+..+| +|.+||..+ +..|.|-.+..+..
T Consensus 26 ~~~~~n~t~i~~a~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSp-sG~lLAl~g-~~~V~Vv~LP~~~~~~~~~ 103 (452)
T 3pbp_A 26 IFSSQNGTRIVFIQDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISST-SGDLLCLFN-DNEIFVMEVPWGYSNVEDV 103 (452)
T ss_dssp EEEETTTTEEEEEETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECT-TSSEEEEEC-SSEEEEEECCTTCSCCCCH
T ss_pred EEEEcCCCEEEEEECCEEEEEECCCCCcceEEecCcccccCceeEEEECC-CCCEEEEec-CCeEEEEEecCccccCccc
Confidence 34567888888888999999998755445555443 23688999999 999998886 55799988873310
Q ss_pred -------EEeecc------CCCCeeEEEEcCC---CCEEEEEeCCCcEEEEECCCCc
Q 001319 881 -------KSKLKG------HQKRITGLAFSTS---LNILVSSGADAQLCVWSIDTWE 921 (1101)
Q Consensus 881 -------~~~~~~------h~~~V~~l~~s~d---~~~l~s~s~Dg~v~lwd~~~~~ 921 (1101)
.+.+.- ...+|..+.|+|- +..|++-..|++|++||+....
T Consensus 104 ~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~ 160 (452)
T 3pbp_A 104 SIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQ 160 (452)
T ss_dssp HHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTT
T ss_pred ccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCC
Confidence 112211 3577999999996 4589999999999999998743
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.95 E-value=0.054 Score=57.32 Aligned_cols=231 Identities=16% Similarity=0.162 Sum_probs=119.9
Q ss_pred CCCeEEEEc-C----CeEEEEECCCceEEEEeeCCCCCe-eEEEEecCCCCEEEEEeCC-----CcEEEEEeecceEEE-
Q 001319 815 NDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTED-----STIHIYNVRVDEVKS- 882 (1101)
Q Consensus 815 dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~d-----g~v~iwd~~~~~~~~- 882 (1101)
++.+++.|+ + ..+..||+.+.+-...-....... .+++. - ++.+++.|+.+ ..+.+||..+.+-..
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~ 92 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQVAELPSRRCRAGMVY-M-AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSV 92 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-E-TTEEEEESCBCSSSBCCCEEEEETTTTEEEEE
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeEcccCCcccccceEEE-E-CCEEEEEeCcCCCccccceEEECCCCCceeeC
Confidence 344555554 2 358899988765333211111111 12222 2 66788888755 358889887764322
Q ss_pred -eeccCCCCeeEEEEcCCCCEEEEEeCCC-----cEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-
Q 001319 883 -KLKGHQKRITGLAFSTSLNILVSSGADA-----QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH- 955 (1101)
Q Consensus 883 -~~~~h~~~V~~l~~s~d~~~l~s~s~Dg-----~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~- 955 (1101)
.+......-..+. -+++.++.|+.++ .+.+||+.+.+...... .. ....-.+++. -+++.++.|.
T Consensus 93 ~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~---~p--~~r~~~~~~~-~~~~iyv~GG~ 164 (302)
T 2xn4_A 93 ANMRDRRSTLGAAV--LNGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAP---MN--TRRSSVGVGV-VGGLLYAVGGY 164 (302)
T ss_dssp CCCSSCCBSCEEEE--ETTEEEEEEEECSSCEEEEEEEEETTTTEEEEECC---CS--SCCBSCEEEE-ETTEEEEECCE
T ss_pred CCCCccccceEEEE--ECCEEEEEcCCCCCccCceEEEEeCCCCeEeecCC---CC--CcccCceEEE-ECCEEEEEeCC
Confidence 2221111112222 3677788887664 47788888765332211 11 1111122222 3556655532
Q ss_pred -------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeeCCCCc
Q 001319 956 -------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTY 1023 (1101)
Q Consensus 956 -------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~ 1023 (1101)
-..+.+||..+.+-...-..... ......+. -++++++.|+.+ ..+.+||..+.+....-..
T Consensus 165 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~--- 238 (302)
T 2xn4_A 165 DVASRQCLSTVECYNATTNEWTYIAEMSTR-RSGAGVGV--LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADM--- 238 (302)
T ss_dssp ETTTTEECCCEEEEETTTTEEEEECCCSSC-CBSCEEEE--ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCC---
T ss_pred CCCCCccccEEEEEeCCCCcEEECCCCccc-cccccEEE--ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCC---
Confidence 23588999987654433222111 11122222 267777787754 3689999988765433211
Q ss_pred CCCcccCCCCccceEEEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCcccc
Q 001319 1024 LSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG-----SVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1024 ~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg-----~v~iWd~~~~~~~~~~ 1073 (1101)
+.. ..... .+.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 239 -~~~-----r~~~~-~~~~---~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 281 (302)
T 2xn4_A 239 -NMC-----RRNAG-VCAV---NGLLYVVGGDDGSCNLASVEYYNPTTDK--WTV 281 (302)
T ss_dssp -SSC-----CBSCE-EEEE---TTEEEEECCBCSSSBCCCEEEEETTTTE--EEE
T ss_pred -CCc-----cccCe-EEEE---CCEEEEECCcCCCcccccEEEEcCCCCe--EEE
Confidence 111 11111 1221 577888888764 48899988765 654
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.093 Score=55.43 Aligned_cols=194 Identities=8% Similarity=-0.021 Sum_probs=95.8
Q ss_pred CCCEEEEEECC-----CeEEEEeecCCcc--cccceeeecccCcEEEEEEecCCCceEEEEecCC-----ceEEEEE-cC
Q 001319 417 DGNYVGVAFTK-----HLIQLYSYAGSND--LRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LS 483 (1101)
Q Consensus 417 dg~~las~~~d-----~~i~vwd~~~~~~--~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-----~~v~iwd-~~ 483 (1101)
+++.++.|+.+ ..+.+||..+++. ......+......-.++. .+++ +++.|+.+ ..+.+|| .+
T Consensus 62 ~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~~d~~~ 137 (301)
T 2vpj_A 62 HDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATT--LGDM--IYVSGGFDGSRRHTSMERYDPNI 137 (301)
T ss_dssp TTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEE--ETTE--EEEECCBCSSCBCCEEEEEETTT
T ss_pred CCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEE--ECCE--EEEEcccCCCcccceEEEEcCCC
Confidence 67777777754 3589999888651 111111111111112222 2555 56666643 3588888 44
Q ss_pred Ccee--EEeecCCcCeEEEecccCCCccEEEEeccC-----CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 484 GRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 484 ~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
.+-. ..+.........+.+ ++.+++.|+.+ ..+.+||+.+.+=...-..........+..-+++.++.|
T Consensus 138 ~~W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~i~v~G 213 (301)
T 2vpj_A 138 DQWSMLGDMQTAREGAGLVVA----SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGVALLNDHIYVVG 213 (301)
T ss_dssp TEEEEEEECSSCCBSCEEEEE----TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEETTEEEEEC
T ss_pred CeEEECCCCCCCcccceEEEE----CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceEEEECCEEEEEe
Confidence 4322 222211111222222 45677777754 357788876654332211111111111122356677777
Q ss_pred ecCCCC-CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCee
Q 001319 557 GTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNI 619 (1101)
Q Consensus 557 ~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~ 619 (1101)
+.+... ...+.+||+.+.+....-..........++. -+++.++.|+.+ ..+.+||..+.+.
T Consensus 214 G~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W 281 (301)
T 2vpj_A 214 GFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATV-LRGRLYAIAGYDGNSLLSSIECYDPIIDSW 281 (301)
T ss_dssp CBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBCSSSBEEEEEEEETTTTEE
T ss_pred CCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEE-ECCEEEEEcCcCCCcccccEEEEcCCCCeE
Confidence 653322 3568999998876554422222111112222 255666666654 3577888776654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.82 E-value=0.15 Score=54.02 Aligned_cols=230 Identities=7% Similarity=-0.013 Sum_probs=114.2
Q ss_pred CEEEEEEC--CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC----ceEEEEE-cCCcee--EE
Q 001319 419 NYVGVAFT--KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD----KLIKVWE-LSGRKL--FN 489 (1101)
Q Consensus 419 ~~las~~~--d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d----~~v~iwd-~~~~~~--~~ 489 (1101)
..++.|+. ...+.+||..+++-.. ...+......-..+. -+++ +++.|+.+ ..+.+|| .+++-. ..
T Consensus 13 ~l~~~GG~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~~~~~--~~~~--lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~ 87 (306)
T 3ii7_A 13 YRIALFGGSQPQSCRYFNPKDYSWTD-IRCPFEKRRDAACVF--WDNV--VYILGGSQLFPIKRMDCYNVVKDSWYSKLG 87 (306)
T ss_dssp EEEEEECCSSTTSEEEEETTTTEEEE-CCCCSCCCBSCEEEE--ETTE--EEEECCBSSSBCCEEEEEETTTTEEEEEEC
T ss_pred eEEEEeCCCCCceEEEecCCCCCEec-CCCCCcccceeEEEE--ECCE--EEEEeCCCCCCcceEEEEeCCCCeEEECCC
Confidence 34555654 3568899988764221 111111111112222 2555 66777654 5688889 544322 11
Q ss_pred eecCCcCeEEEecccCCCccEEEEeccC------CeEEEEecCCCCeeeeccCCCCc-eEEEEEccCCCEEEEeecCCCC
Q 001319 490 FEGHEAPVYSICPHHKENIQFIFSTAID------GKIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 490 ~~~h~~~v~~v~~~~~~~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
+.........+.+ ++.+++.|+.+ ..+.+||..+.+=...-..+... -.+++. -+++.++.++.....
T Consensus 88 ~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~ 162 (306)
T 3ii7_A 88 PPTPRDSLAACAA----EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVE-ANGLIYVCGGSLGNN 162 (306)
T ss_dssp CSSCCBSCEEEEE----TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCEESCT
T ss_pred CCccccceeEEEE----CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEE-ECCEEEEECCCCCCC
Confidence 1111111222222 44677777765 45788887765432221111111 112222 366667776653322
Q ss_pred -----CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeeeEeeccCCCCCCC
Q 001319 563 -----DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGLPNL 632 (1101)
Q Consensus 563 -----~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1101)
...+.+||+.+.+-...-.......-..++.. +++.++.||.+ ..+.+||..+.+....-..... ..
T Consensus 163 ~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~--r~ 239 (306)
T 3ii7_A 163 VSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV-KDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWK--GV 239 (306)
T ss_dssp TTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE-TTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCC--BS
T ss_pred CcccccceEEEeCCCCCeEEECCCccchhhcceEEEE-CCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCC--cc
Confidence 35688999988765444222221112222222 55566666643 4689999988765443222211 11
Q ss_pred CeeEEecCCCEEEEEEcC-----CcEEEEEcccc
Q 001319 633 PRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~ 661 (1101)
...+..-++++++.|+.+ ..+.+||..+.
T Consensus 240 ~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 240 TVKCAAVGSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp CCEEEEETTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred ceeEEEECCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 122222267777777754 45777777654
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.37 Score=52.01 Aligned_cols=234 Identities=9% Similarity=0.107 Sum_probs=116.7
Q ss_pred CcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC---CCEE
Q 001319 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD---GNYV 421 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd---g~~l 421 (1101)
...+.|+|.|||++++++ ...|.|++++.+ +.... .+. + +. .+..........|+|+|| +.+|
T Consensus 18 ~~P~~i~~~pdG~~l~V~-e~~G~i~~~~~~-g~~~~--~~~--~-------~~-~v~~~g~~g~~gia~~pdf~~~g~l 83 (353)
T 2g8s_A 18 DHPWALAFLPDNHGMLIT-LRGGELRHWQAG-KGLSA--PLS--G-------VP-DVWAHGQGGLLDVVLAPDFAQSRRI 83 (353)
T ss_dssp SSEEEEEECSTTCCEEEE-ETTTEEEEEETT-TEECC--CCB--S-------CC-CCCCSTTCSEEEEEECTTHHHHCEE
T ss_pred CCcEEEEEcCCCCEEEEE-eCCceEEEEeCC-Cceee--Eec--C-------Cc-ccccCCCCCceeEEECCCCCCCCEE
Confidence 467899999999844444 567899998853 32110 000 0 00 012223456789999996 5555
Q ss_pred EEEE-C-------CCeEEEEeecCCc-cccccee-ee--------cccCcEEEEEEecCCCceEEEEecC----------
Q 001319 422 GVAF-T-------KHLIQLYSYAGSN-DLRQHSQ-ID--------AHVGAVNDLAFAYPNKLLCVVTCGD---------- 473 (1101)
Q Consensus 422 as~~-~-------d~~i~vwd~~~~~-~~~~~~~-l~--------~h~~~V~~l~~s~d~~~~~l~s~~~---------- 473 (1101)
.++. . ...|..|++..+. .+..... +. .|. -..++|.|||. +++..|..
T Consensus 84 Yv~~~~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~--~~~l~~~pdG~-Lyv~~Gd~~~~~~~q~~~ 160 (353)
T 2g8s_A 84 WLSYSEVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHF--GGRLVFDGKGY-LFIALGENNQRPTAQDLD 160 (353)
T ss_dssp EEEEEEECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCC--CCCEEECSSSE-EEEEECCTTCGGGGGCTT
T ss_pred EEEEeCCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCccc--CccEEECCCCc-EEEEECCCCCCCccCCCC
Confidence 4442 2 2356667765431 1111001 11 132 35799999996 34444332
Q ss_pred --CceEEEEEcCCc-------------eeEEe-ecCCcCeEEEecccCCCccEEEEeccC--CeEEEEecCCCCe-----
Q 001319 474 --DKLIKVWELSGR-------------KLFNF-EGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGS----- 530 (1101)
Q Consensus 474 --d~~v~iwd~~~~-------------~~~~~-~~h~~~v~~v~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~----- 530 (1101)
.+.|.-.+.+|. ....+ .+|. ....++|.+. +|. |+++... +.=.+..+..+..
T Consensus 161 ~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~G~r-np~gl~~d~~-~g~-l~~~d~g~~~~dei~~i~~G~nyGwp~ 237 (353)
T 2g8s_A 161 KLQGKLVRLTDQGEIPDDNPFIKESGVRAEIWSYGIR-NPQGMAMNPW-SNA-LWLNEHGPRGGDEINIPQKGKNYGWPL 237 (353)
T ss_dssp SCTTEEEEEETTSCCCTTCTTTTSTTSCTTEEEECCS-EEEEEEEETT-TTE-EEEEEECSBSCEEEECCCTTCBCCTTT
T ss_pred CCCeEEEEECCCCCCCCCCCCcCCCCCCccEEEEcCc-CccceEEECC-CCC-EEEEecCCCCCcEEeEeccCCcCCCCC
Confidence 245666665554 11122 2333 3677888663 233 4443322 1112222211110
Q ss_pred --------------------------eeeccCCCCceEEEEEcc-------CCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 531 --------------------------RVDYDAPGHWCTTMLYSA-------DGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 531 --------------------------~~~~~~~~~~v~~~~~s~-------d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
...+. +......++|.. +|.++++.. ..+.|...++..++..
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~-~~~ap~G~~~y~g~~fp~~~g~l~v~~~----~~~~v~~~~~~~~~~~ 312 (353)
T 2g8s_A 238 ATWGINYSGFKIPEAKGEIVAGTEQPVFYWK-DSPAVSGMAFYNSDKFPQWQQKLFIGAL----KDKDVIVMSVNGDKVT 312 (353)
T ss_dssp BCSSBCTTSSCCTTCCBSSCTTSCCCSEEES-SCCCEEEEEEECCSSSGGGTTEEEEEET----TTTEEEEEEEETTEEE
T ss_pred ccCCCCCCCCccCcccCCCCCCccCCeEEeC-CCcCcceeEEECCccCcccCCcEEEEEc----cCCEEEEEEeCCCeEe
Confidence 00011 112456777764 455555543 2567777777665443
Q ss_pred EE--ecccCCcceEEEEEeCCCCEEEEE
Q 001319 578 RT--YAGFRKKSNGVVQFDTTQNHFLAV 603 (1101)
Q Consensus 578 ~~--~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1101)
.. +.......+..+++.|||..+++.
T Consensus 313 ~~~~~~~~~~~rp~~v~~~pdG~lyv~t 340 (353)
T 2g8s_A 313 EDGRILTDRGQRIRDVRTGPDGYLYVLT 340 (353)
T ss_dssp EEEEESGGGCCCEEEEEECTTSCEEEEE
T ss_pred eeEEcccCCCCceeEEEECCCCcEEEEE
Confidence 32 211112256778899998755543
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=96.77 E-value=0.26 Score=54.47 Aligned_cols=115 Identities=17% Similarity=0.057 Sum_probs=79.2
Q ss_pred CEeEEEecCCCCeEEEEc--CCeEEEEECCCc------eE-------EEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcE
Q 001319 806 AVPCIALSKNDSYVMSAT--GGKISLFNMMTF------KV-------MTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTI 870 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~------~~-------~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v 870 (1101)
....+.++|||+++++++ +.++.|+|+... +. ..... -.-.....+|.+ +|....+..-|..|
T Consensus 324 sPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e-~GlGPlHt~Fd~-~G~aYTtlfidSqv 401 (638)
T 3sbq_A 324 NPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPE-LGLGPLHTTFDG-RGNAYTTLFIDSQV 401 (638)
T ss_dssp SCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCB-CCSCEEEEEECS-SSEEEEEETTTTEE
T ss_pred CCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeecc-CCCcccEEEECC-CCceEeeeeecceE
Confidence 345688999999998887 788999998742 11 22222 234577899999 77666666689999
Q ss_pred EEEEeecc----------eEEEeeccCCCCeeEEE-----EcCCCCEEEEEe---CCCc----------EEEEECCCCcc
Q 001319 871 HIYNVRVD----------EVKSKLKGHQKRITGLA-----FSTSLNILVSSG---ADAQ----------LCVWSIDTWEK 922 (1101)
Q Consensus 871 ~iwd~~~~----------~~~~~~~~h~~~V~~l~-----~s~d~~~l~s~s---~Dg~----------v~lwd~~~~~~ 922 (1101)
.-|++... ..+.++.-|..+-...+ -.+||++|++.. .|.. -.+.|+...+.
T Consensus 402 vkWni~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsGdkM 481 (638)
T 3sbq_A 402 VKWNMEEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISGDEM 481 (638)
T ss_dssp EEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSSSSC
T ss_pred EEEeccHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCCCce
Confidence 99999864 46667776655432222 257999999974 4543 36777766543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=96.75 E-value=0.78 Score=48.72 Aligned_cols=235 Identities=13% Similarity=0.086 Sum_probs=124.8
Q ss_pred CCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEE--Eee----CCCCCeeEEEEecC---CCCEEEEEe--CCCcEE
Q 001319 804 EEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMT--TFM----SPPPASTFLAFHPQ---DNNIIAIGT--EDSTIH 871 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~--~~~----~~~~~i~~l~~s~~---~~~~la~g~--~dg~v~ 871 (1101)
-...+.++|.|||+++++-. .|+|++++..+++... .+. ........|+|+|+ ++.+.++-+ .++.|.
T Consensus 31 L~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~ 110 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIV 110 (347)
T ss_dssp CSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEE
T ss_pred CCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEE
Confidence 34578999999999998887 8999999876665422 221 12345789999983 344444322 345566
Q ss_pred EEEeecc----------eEE-Eeec-cCCCCeeEEEEcCCCCEEEEEeC-------------CCcEEEEECCCCcccc--
Q 001319 872 IYNVRVD----------EVK-SKLK-GHQKRITGLAFSTSLNILVSSGA-------------DAQLCVWSIDTWEKRK-- 924 (1101)
Q Consensus 872 iwd~~~~----------~~~-~~~~-~h~~~V~~l~~s~d~~~l~s~s~-------------Dg~v~lwd~~~~~~~~-- 924 (1101)
-|.+..+ +.+ ..+. +.......|+|.|||.+.++.+. .|.|.-.+.+..-...
T Consensus 111 R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~dG~ip~~nP 190 (347)
T 3das_A 111 RMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPDGEPAPGNP 190 (347)
T ss_dssp EEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTTSSBCTTCS
T ss_pred EEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCCCCccCCCC
Confidence 6655541 111 1222 11123467999999988887653 2444444443210000
Q ss_pred --ceEEeecCCCCCCCcceEEEcCCCCEEEE--EeCCeEEEEEcCCcee------------------eeEeccCCCCCCC
Q 001319 925 --SVTIHIPAGKTPTGDTRVQFNADQVRMLV--VHETQLAIYDASKMER------------------IRQWTPQDALSAP 982 (1101)
Q Consensus 925 --~~~~~~~~~~~~~~v~~~~~s~d~~~l~~--~~d~~i~v~d~~~~~~------------------~~~~~~~~~h~~~ 982 (1101)
...+. ..++ .....++|+|+|.+.++ +.++.-.|.-+..+.. +..+..+ ...
T Consensus 191 f~~~~i~-a~G~--RNp~Gla~dp~G~L~~~d~g~~~~deln~i~~G~nyGwP~~~g~~~~~~~~~P~~~~~~~---~~a 264 (347)
T 3das_A 191 FPGSPVY-SYGH--RNVQGLAWDDKQRLFASEFGQDTWDELNAIKPGDNYGWPEAEGKGGGSGFHDPVAQWSTD---EAS 264 (347)
T ss_dssp STTCCEE-EBCC--SBCCEEEECTTCCEEEEECCSSSCEEEEEECTTCBCCTTTCCSSCCCTTCCCCSEEECTT---TCC
T ss_pred CCCCeEE-eeCC--CCcceEEECCCCCEEEEecCCCCCceeeEEcCCCEecCCcccCCCCCccccCCcEecCCC---CCC
Confidence 00011 1122 34678999999887776 3343333333333221 1111111 134
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001319 983 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1054 (1101)
Q Consensus 983 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~ 1054 (1101)
...++|. +|..++..-..+.|....++....... ...++ ......+..|+..| |+.++++..
T Consensus 265 p~G~~~~-~g~~~~~~l~~~~l~~v~~~~~~~~~~--~e~~l------~~~~gR~~dv~~~p-DG~lyv~td 326 (347)
T 3das_A 265 PSGIAYA-EGSVWMAGLRGERLWRIPLKGTAAAAD--PQAFL------EGEYGRLRTVAPAG-GDKLWLVTS 326 (347)
T ss_dssp EEEEEEE-TTEEEEEESTTCSEEEEEEETTEESSC--CEEES------TTTSSCEEEEEEEE-TTEEEEEEC
T ss_pred CcceEEE-cCceeeccccCCEEEEEEecCCceecc--eEEee------cCCCCCccEEEECC-CCcEEEEEc
Confidence 5666665 466555555666666666654432100 00000 11223567888888 677766654
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.12 Score=54.47 Aligned_cols=231 Identities=10% Similarity=0.029 Sum_probs=113.2
Q ss_pred CCCEEEEEECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCC-----ceEEEEE-cCCce
Q 001319 417 DGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDD-----KLIKVWE-LSGRK 486 (1101)
Q Consensus 417 dg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d-----~~v~iwd-~~~~~ 486 (1101)
++..++.|+.+ ..+..||..+.+-.. ...+......- +++ .-+++ +++.|+.+ ..+.+|| .+.+
T Consensus 15 ~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~d~~~~~- 88 (302)
T 2xn4_A 15 PKLMVVVGGQAPKAIRSVECYDFKEERWHQ-VAELPSRRCRA-GMV-YMAGL--VFAVGGFNGSLRVRTVDSYDPVKDQ- 88 (302)
T ss_dssp CEEEEEECCBSSSBCCCEEEEETTTTEEEE-ECCCSSCCBSC-EEE-EETTE--EEEESCBCSSSBCCCEEEEETTTTE-
T ss_pred CCEEEEECCCCCCCCCcEEEEcCcCCcEeE-cccCCcccccc-eEE-EECCE--EEEEeCcCCCccccceEEECCCCCc-
Confidence 34455556543 357888887754211 11111111111 122 22555 66677654 3578888 4443
Q ss_pred eEEee---cCCcCeEEEecccCCCccEEEEeccCC-----eEEEEecCCCCeeeeccCCCCc-eEEEEEccCCCEEEEee
Q 001319 487 LFNFE---GHEAPVYSICPHHKENIQFIFSTAIDG-----KIKAWLYDTMGSRVDYDAPGHW-CTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 487 ~~~~~---~h~~~v~~v~~~~~~~~~~l~s~~~d~-----~i~~wd~~~~~~~~~~~~~~~~-v~~~~~s~d~~~l~~~~ 557 (1101)
-..+. ........+.+ ++.+++.|+.++ .+.+||+.+.+-...-...... -.+++. -+++.++.|+
T Consensus 89 W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG 163 (302)
T 2xn4_A 89 WTSVANMRDRRSTLGAAVL----NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGV-VGGLLYAVGG 163 (302)
T ss_dssp EEEECCCSSCCBSCEEEEE----TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECC
T ss_pred eeeCCCCCccccceEEEEE----CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEE-ECCEEEEEeC
Confidence 22222 11111222222 446777777553 4667777655422221111111 112222 3666677766
Q ss_pred cCCCC---CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeeeEeeccCCCC
Q 001319 558 TSKDG---DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 558 ~~~~~---~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
.+... ...+.+||+.+.+-...-..........++. -++..++.||.+ ..+.+||..+.+....-.....
T Consensus 164 ~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~- 241 (302)
T 2xn4_A 164 YDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGV-LNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMC- 241 (302)
T ss_dssp EETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSC-
T ss_pred CCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEE-ECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCc-
Confidence 53322 3468899998876554322211111122222 245666667654 4689999988765543322211
Q ss_pred CCCCeeEEecCCCEEEEEEcCC-----cEEEEEcccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTADN-----GFKILANAIG 661 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~-----~i~iwd~~~~ 661 (1101)
.....+..-++++++.|+.++ .+.+||..+.
T Consensus 242 -r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 242 -RRNAGVCAVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp -CBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred -cccCeEEEECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 122222333677777777553 4788887765
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=96.68 E-value=0.61 Score=52.15 Aligned_cols=104 Identities=18% Similarity=0.166 Sum_probs=63.5
Q ss_pred CCEeEEEecCCCCeEEEEcC-CeEEEEECCCceEEE--EeeC------CCCCeeEEEEecC---CCCEEEEEeC------
Q 001319 805 EAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMT--TFMS------PPPASTFLAFHPQ---DNNIIAIGTE------ 866 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~d-g~i~vwd~~~~~~~~--~~~~------~~~~i~~l~~s~~---~~~~la~g~~------ 866 (1101)
.....++|.|||+++++-.. +.|++++..+++... .+.. .......|+|+|+ ++.+.++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~ 106 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKST 106 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC-
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCC
Confidence 34679999999998888775 479998876555432 2221 1345678999993 3444444332
Q ss_pred ------CCcEEEEEeecc-------eEEE-eecc-CCCCeeEEEEcCCCCEEEEEeC
Q 001319 867 ------DSTIHIYNVRVD-------EVKS-KLKG-HQKRITGLAFSTSLNILVSSGA 908 (1101)
Q Consensus 867 ------dg~v~iwd~~~~-------~~~~-~~~~-h~~~V~~l~~s~d~~~l~s~s~ 908 (1101)
...|.-|++..+ +.+. .+.. .......|+|.|||++.++.+.
T Consensus 107 ~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 107 DKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp -CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred ccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence 235665665432 1121 1221 1234789999999998777654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.58 E-value=0.21 Score=53.01 Aligned_cols=225 Identities=12% Similarity=0.098 Sum_probs=114.8
Q ss_pred CeEEEEECCCceEEE-EeeCCCCCeeEEEEecCCCCEEEEEeC----CC-------cEEEEEeecceEEEeeccCCCCee
Q 001319 825 GKISLFNMMTFKVMT-TFMSPPPASTFLAFHPQDNNIIAIGTE----DS-------TIHIYNVRVDEVKSKLKGHQKRIT 892 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~-~~~~~~~~i~~l~~s~~~~~~la~g~~----dg-------~v~iwd~~~~~~~~~~~~h~~~V~ 892 (1101)
..+..||..+.+-.. .+..+.......+... ++.+++.|+. ++ .+.+||..+++-...-.....+-.
T Consensus 13 ~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~ 91 (315)
T 4asc_A 13 EGAVAYDPAANECYCASLSSQVPKNHVSLVTK-ENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCL 91 (315)
T ss_dssp TEEEEEETTTTEEEEEECCCCSCSSEEEEECT-TCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEES
T ss_pred CceEEECCCCCeEecCCCCCCCCccceEEEEE-CCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhc
Confidence 679999998776432 2222223333333444 6788888873 11 277888777643221111111111
Q ss_pred EEEEcCCCCEEEEEeCC--------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeC-------C
Q 001319 893 GLAFSTSLNILVSSGAD--------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE-------T 957 (1101)
Q Consensus 893 ~l~~s~d~~~l~s~s~D--------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d-------~ 957 (1101)
..+..-+++.++.||.+ ..+.+||..+.+-.....+. . ......+..-+++.++.|.. .
T Consensus 92 ~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p-----~-~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 165 (315)
T 4asc_A 92 FGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLP-----Y-VVYGHTVLSHMDLVYVIGGKGSDRKCLN 165 (315)
T ss_dssp CEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCS-----S-CCBSCEEEEETTEEEEECCBCTTSCBCC
T ss_pred eeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCC-----C-cccceeEEEECCEEEEEeCCCCCCcccc
Confidence 11112256777777743 45889999876532221111 1 11222223345566666432 4
Q ss_pred eEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCC-----cEEEEeCCCCceeEeeCCCCcCCCcccCCC
Q 001319 958 QLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDG-----NIGVFDADTLRLRCYIAPSTYLSPSVLNGS 1032 (1101)
Q Consensus 958 ~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~ 1032 (1101)
.+.+||..+.+-...-..... ...-.++. -++++++.|+.++ .+.+||+.+.+....-. .+...
T Consensus 166 ~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r---- 234 (315)
T 4asc_A 166 KMCVYDPKKFEWKELAPMQTA-RSLFGATV--HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEA----FPQER---- 234 (315)
T ss_dssp CEEEEETTTTEEEECCCCSSC-CBSCEEEE--ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECC----CSSCC----
T ss_pred eEEEEeCCCCeEEECCCCCCc-hhceEEEE--ECCEEEEEeccCCCCccceEEEEECCCCeEEECCC----CCCcc----
Confidence 689999887654332221111 11122222 2677777877654 48899998875544321 11111
Q ss_pred CccceEEEEEecCCCCEEEEEECCC--------------eEEEEeCCCCCCccccC
Q 001319 1033 QTVYPLVVAAHPLEPNQFAIGLTDG--------------SVKVMEPSESEGKWGVS 1074 (1101)
Q Consensus 1033 ~~~~~~~l~~~p~d~~~l~s~~~Dg--------------~v~iWd~~~~~~~~~~~ 1074 (1101)
... ..+.. ++.+++.|+.++ .+.+||+.+.+ |...
T Consensus 235 -~~~-~~~~~---~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~--W~~~ 283 (315)
T 4asc_A 235 -SSL-SLVSL---VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKK--WEGV 283 (315)
T ss_dssp -BSC-EEEEE---TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTE--EEEE
T ss_pred -cce-eEEEE---CCEEEEECCccccCcCCccccccccCcEEEecCCCCh--hhhh
Confidence 111 11221 567888888743 36778877765 5543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.50 E-value=0.11 Score=55.02 Aligned_cols=234 Identities=13% Similarity=0.098 Sum_probs=121.4
Q ss_pred ecCCCCeEEEEc-C----CeEEEEECCCceEEEEeeCCCCCe-eEEEEecCCCCEEEEEeC----C-----CcEEEEEee
Q 001319 812 LSKNDSYVMSAT-G----GKISLFNMMTFKVMTTFMSPPPAS-TFLAFHPQDNNIIAIGTE----D-----STIHIYNVR 876 (1101)
Q Consensus 812 ~s~dg~~la~~~-d----g~i~vwd~~~~~~~~~~~~~~~~i-~~l~~s~~~~~~la~g~~----d-----g~v~iwd~~ 876 (1101)
..-++.+++.|+ + ..+.+||..+.+-...-....... .+++. - ++.+++.|+. + ..+.+||..
T Consensus 21 ~~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~-~~~lyv~GG~~~~~~~~~~~~~~~~~d~~ 98 (308)
T 1zgk_A 21 PKVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLRLADLQVPRSGLAGCV-V-GGLLYAVGGRNNSPDGNTDSSALDCYNPM 98 (308)
T ss_dssp CCCCCCEEEECCBSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-E-TTEEEEECCEEEETTEEEECCCEEEEETT
T ss_pred cCCCCEEEEEeCcCCCCcceEEEEcCCCCeEeECCCCCcccccceEEE-E-CCEEEEECCCcCCCCCCeecceEEEECCC
Confidence 344666777665 2 458999988765433211111111 12222 2 5677777775 2 468888887
Q ss_pred cceEEEe--eccCCCCeeEEEEcCCCCEEEEEeCC-----CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCC
Q 001319 877 VDEVKSK--LKGHQKRITGLAFSTSLNILVSSGAD-----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 877 ~~~~~~~--~~~h~~~V~~l~~s~d~~~l~s~s~D-----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
+.+-... +......-..+. -+++.++.|+.+ ..+.+||..+.+......+. .. ..-.+++.. +++
T Consensus 99 ~~~W~~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p--~~---r~~~~~~~~-~~~ 170 (308)
T 1zgk_A 99 TNQWSPCAPMSVPRNRIGVGV--IDGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPML--TR---RIGVGVAVL-NRL 170 (308)
T ss_dssp TTEEEECCCCSSCCBTCEEEE--ETTEEEEECCEETTEECCCEEEEETTTTEEEECCCCS--SC---CBSCEEEEE-TTE
T ss_pred CCeEeECCCCCcCccccEEEE--ECCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCC--cc---ccceEEEEE-CCE
Confidence 7643222 211111122222 267777777754 35888998876533221111 11 111122222 566
Q ss_pred EEEEEe------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEee
Q 001319 950 RMLVVH------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 950 ~l~~~~------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~ 1018 (1101)
.++.|. ...+.+||..+.+-...-..... ......+.+ ++++++.|+.+ ..+.+||+.+.+....-
T Consensus 171 iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~ 247 (308)
T 1zgk_A 171 LYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTI-RSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVA 247 (308)
T ss_dssp EEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSC-CBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECC
T ss_pred EEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCc-cccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECC
Confidence 666543 24689999887654332221111 112223333 67777777764 56999999887654322
Q ss_pred CCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCC-----eEEEEeCCCCCCcccc
Q 001319 1019 APSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG-----SVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1019 ~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg-----~v~iWd~~~~~~~~~~ 1073 (1101)
. .+.. .... +++.. ++.+++.|+.++ .+.+||+.+.+ |..
T Consensus 248 ~----~p~~-----r~~~--~~~~~--~~~i~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 292 (308)
T 1zgk_A 248 P----MKHR-----RSAL--GITVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSE 292 (308)
T ss_dssp C----CSSC-----CBSC--EEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEE
T ss_pred C----CCCC-----ccce--EEEEE--CCEEEEEcCcCCCcccceEEEEcCCCCE--Eee
Confidence 1 1111 1111 11111 577888888653 57888887765 543
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.3 Score=51.69 Aligned_cols=232 Identities=6% Similarity=-0.052 Sum_probs=113.4
Q ss_pred ccCCCEEEEEECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC----C-----ceEEEEE
Q 001319 415 SPDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----D-----KLIKVWE 481 (1101)
Q Consensus 415 spdg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~----d-----~~v~iwd 481 (1101)
.-++..++.|+.+ ..+.+||..+++-.. ...+......- +++ ..+++ +++.|+. + ..+.+||
T Consensus 22 ~~~~~i~v~GG~~~~~~~~~~~~d~~~~~W~~-~~~~p~~r~~~-~~~-~~~~~--lyv~GG~~~~~~~~~~~~~~~~~d 96 (308)
T 1zgk_A 22 KVGRLIYTAGGYFRQSLSYLEAYNPSNGTWLR-LADLQVPRSGL-AGC-VVGGL--LYAVGGRNNSPDGNTDSSALDCYN 96 (308)
T ss_dssp CCCCCEEEECCBSSSBCCCEEEEETTTTEEEE-CCCCSSCCBSC-EEE-EETTE--EEEECCEEEETTEEEECCCEEEEE
T ss_pred CCCCEEEEEeCcCCCCcceEEEEcCCCCeEeE-CCCCCcccccc-eEE-EECCE--EEEECCCcCCCCCCeecceEEEEC
Confidence 3356777777632 358899988764221 11111111111 122 22555 5666665 2 3578888
Q ss_pred -cCCceeEEee---cCCcCeEEEecccCCCccEEEEeccC-----CeEEEEecCCCCeeeeccCC--CCceEEEEEccCC
Q 001319 482 -LSGRKLFNFE---GHEAPVYSICPHHKENIQFIFSTAID-----GKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADG 550 (1101)
Q Consensus 482 -~~~~~~~~~~---~h~~~v~~v~~~~~~~~~~l~s~~~d-----~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~ 550 (1101)
.+.+ -..+. ........+.+ ++.+++.|+.+ ..+.+||..+.+-...-... ......+.+ ++
T Consensus 97 ~~~~~-W~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~ 169 (308)
T 1zgk_A 97 PMTNQ-WSPCAPMSVPRNRIGVGVI----DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NR 169 (308)
T ss_dssp TTTTE-EEECCCCSSCCBTCEEEEE----TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TT
T ss_pred CCCCe-EeECCCCCcCccccEEEEE----CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CC
Confidence 4443 22221 11111222222 44677777654 35777887665422211111 111122222 66
Q ss_pred CEEEEeecCCCC-CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeeeEeec
Q 001319 551 SRLFSCGTSKDG-DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 551 ~~l~~~~~~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~ 624 (1101)
+.++.|+.+... ...+.+||+.+.+-...-..........++.. ++..++.||.+ ..+.+||+.+.+....-.
T Consensus 170 ~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~ 248 (308)
T 1zgk_A 170 LLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAP 248 (308)
T ss_dssp EEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCC
T ss_pred EEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEEE-CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCC
Confidence 677776653222 35688999988765433221111111222222 55666667654 569999998876554332
Q ss_pred cCCCCCCCCeeEEecCCCEEEEEEcC-----CcEEEEEcccc
Q 001319 625 AEGGLPNLPRLRFSKEGNLLAVTTAD-----NGFKILANAIG 661 (1101)
Q Consensus 625 ~~~~~~~v~~v~~s~~g~~l~~~~~d-----~~i~iwd~~~~ 661 (1101)
.... .....+..-++++++.|+.+ ..+.+||..+.
T Consensus 249 ~p~~--r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 249 MKHR--RSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp CSSC--CBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred CCCC--ccceEEEEECCEEEEEcCcCCCcccceEEEEcCCCC
Confidence 2211 11222222367777777643 34667776654
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.27 E-value=0.36 Score=51.23 Aligned_cols=216 Identities=8% Similarity=-0.057 Sum_probs=103.5
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC-----C------ceEEEEE-cCCceeE
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD-----D------KLIKVWE-LSGRKLF 488 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~-----d------~~v~iwd-~~~~~~~ 488 (1101)
++.|+ ..+.+||..+++-.. ..+..........+...+++ +++.|+. . ..+.+|| .+++- .
T Consensus 8 ~~~GG--~~~~~yd~~~~~W~~--~~~~~p~~r~~~~~~~~~~~--iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W-~ 80 (315)
T 4asc_A 8 FMISE--EGAVAYDPAANECYC--ASLSSQVPKNHVSLVTKENQ--VFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEW-L 80 (315)
T ss_dssp EEEET--TEEEEEETTTTEEEE--EECCCCSCSSEEEEECTTCC--EEEEEEEEECSSCSSSCEEEEEEEEETTTTEE-E
T ss_pred EEEcC--CceEEECCCCCeEec--CCCCCCCCccceEEEEECCE--EEEEcCcccCCCCCccccccceEEecCCCCeE-E
Confidence 34454 468999998865321 12222222233333344666 5666662 1 1267788 44432 2
Q ss_pred EeecC---CcCeEEEecccCCCccEEEEeccC--------CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 489 NFEGH---EAPVYSICPHHKENIQFIFSTAID--------GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 489 ~~~~h---~~~v~~v~~~~~~~~~~l~s~~~d--------~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
.+... ......+.+ ++.+++.|+.+ ..+.+||..+.+=...-..+.......+..-+++.++.|+
T Consensus 81 ~~~~~p~~r~~~~~~~~----~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG 156 (315)
T 4asc_A 81 GMPPLPSPRCLFGLGEA----LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGG 156 (315)
T ss_dssp ECCCBSSCEESCEEEEE----TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECC
T ss_pred ECCCCCcchhceeEEEE----CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeC
Confidence 22111 111112222 44667777743 3577888776532221111111111112224666667766
Q ss_pred cCC--CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC-----cEEEEECCCCeeeEeeccCCCCC
Q 001319 558 TSK--DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS-----QIKFWDMDNVNILTSTDAEGGLP 630 (1101)
Q Consensus 558 ~~~--~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg-----~i~iwd~~~~~~~~~~~~~~~~~ 630 (1101)
... .....+.+||+.+.+-...-..........++. -+++.++.||.++ .+.+||..+.+....-.....
T Consensus 157 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-- 233 (315)
T 4asc_A 157 KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATV-HDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQE-- 233 (315)
T ss_dssp BCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSC--
T ss_pred CCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEE-ECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCc--
Confidence 421 113468999998876544322211111122222 2566677777543 588999988765544322211
Q ss_pred CCCeeEEecCCCEEEEEEcC
Q 001319 631 NLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 631 ~v~~v~~s~~g~~l~~~~~d 650 (1101)
.....+..-++++++.|+.+
T Consensus 234 r~~~~~~~~~~~l~v~GG~~ 253 (315)
T 4asc_A 234 RSSLSLVSLVGTLYAIGGFA 253 (315)
T ss_dssp CBSCEEEEETTEEEEEEEEE
T ss_pred ccceeEEEECCEEEEECCcc
Confidence 22222223367777777653
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=96.20 E-value=1.5 Score=45.79 Aligned_cols=169 Identities=9% Similarity=0.067 Sum_probs=97.1
Q ss_pred EecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc--------------CCeEEEEe
Q 001319 459 FAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI--------------DGKIKAWL 524 (1101)
Q Consensus 459 ~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~--------------d~~i~~wd 524 (1101)
|+.+|..+++.....++.|...+.+|.....+... .+..+ ++ +|.+|+-+.. ...|+..+
T Consensus 21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~~--~~~~i--~~--~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~ 94 (302)
T 3s25_A 21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSND--TAMYI--NA--DKNYVYYVRNNNQKITSQTFFSYDRNSLCRIK 94 (302)
T ss_dssp EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEEE--EEEEE--EE--CSSEEEEEEECC------CCSSCCSEEEEEEE
T ss_pred EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccCC--ceeeE--EE--cCCEEEEEECCCCcccccceeccCCCeEEEEe
Confidence 34566654444444456666666666655555432 12333 23 4455555543 24577777
Q ss_pred cCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 525 YDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 525 ~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
++..+....... .+..+++++++|+....+.++...|...++......+... +.. .+++++++.|+-.+
T Consensus 95 ~dg~~~~~l~~~-----~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~-~~~-----~~~~~~g~~iy~t~ 163 (302)
T 3s25_A 95 RNGHGSTVLDPD-----PCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKN-HYL-----FTCNTSDRYFYYNN 163 (302)
T ss_dssp TTSCCCEEEECS-----CEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEES-SCC-----CCSEEETTEEEEEC
T ss_pred CCCCcceEeecC-----CccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeC-CCc-----eEeeEECCEEEEEe
Confidence 766554333221 1336788999998765223356778888887544433332 211 34678888888766
Q ss_pred C-CCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 605 E-DSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 605 ~-dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
. ...|++.++..+.....+. +. ....++|++.+|+-....
T Consensus 164 ~g~~~Iy~~~l~g~~~~~l~~--~~----~~~~~~P~g~~iy~t~~~ 204 (302)
T 3s25_A 164 PKNGQLYRYDTASQSEALFYD--CN----CYKPVVLDDTNVYYMDVN 204 (302)
T ss_dssp TTTCCEEEEETTTTEEEEEEC--SC----EEEEEEEETTEEEEEEGG
T ss_pred CCCceEEEEECCCCCEEEEeC--CC----ccceeeecCCEEEEEEcC
Confidence 4 6788888887766544332 11 123466888888876644
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.24 Score=53.75 Aligned_cols=231 Identities=14% Similarity=0.117 Sum_probs=111.9
Q ss_pred CCCeEEEEc--CCeEEEEECCC----ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC-C---------CcEEEEEeecc
Q 001319 815 NDSYVMSAT--GGKISLFNMMT----FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE-D---------STIHIYNVRVD 878 (1101)
Q Consensus 815 dg~~la~~~--dg~i~vwd~~~----~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~-d---------g~v~iwd~~~~ 878 (1101)
++++++.|+ ...+.+||+.+ +..+..+......-.+++.. ++++++.|+. + ..+.+||..+.
T Consensus 19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~ 96 (357)
T 2uvk_A 19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN 96 (357)
T ss_dssp TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence 677777775 45799999863 22222222111111222222 5677777776 2 46888998776
Q ss_pred eEEEeeccC-CCCeeEEEEcCCCCEEEEEeCC---------------------------------------CcEEEEECC
Q 001319 879 EVKSKLKGH-QKRITGLAFSTSLNILVSSGAD---------------------------------------AQLCVWSID 918 (1101)
Q Consensus 879 ~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~D---------------------------------------g~v~lwd~~ 918 (1101)
+=...-... .......+...+++.++.|+.+ ..+.+||..
T Consensus 97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~ 176 (357)
T 2uvk_A 97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPS 176 (357)
T ss_dssp EEEECSCCCSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETT
T ss_pred cEEECCCCCCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCC
Confidence 432211111 1222222222577888888865 468899998
Q ss_pred CCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-------CCeEEEEEc--CCcee--eeEeccCCCCCCCEEEEE
Q 001319 919 TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-------ETQLAIYDA--SKMER--IRQWTPQDALSAPISCAV 987 (1101)
Q Consensus 919 ~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-------d~~i~v~d~--~~~~~--~~~~~~~~~h~~~v~~v~ 987 (1101)
+.+-.....+ +... ..-.+++.. ++++++.|. ...+.+||+ .+.+- +..+... .......+
T Consensus 177 ~~~W~~~~~~--p~~~--~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~---~~~~~~~~ 248 (357)
T 2uvk_A 177 TQQWSYAGES--PWYG--TAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSP---DGVAGGFA 248 (357)
T ss_dssp TTEEEEEEEC--SSCC--CBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTT---TCCBSCEE
T ss_pred CCcEEECCCC--CCCC--cccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCC---cccccceE
Confidence 8654332211 1111 111223332 555555532 245777876 43332 2222111 11111112
Q ss_pred EccCCCEEEEEeCC----------------------CcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 988 YSCNSQLVFATFCD----------------------GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 988 ~s~dg~~l~s~~~d----------------------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
...++++++.|+.+ ..+.+||+.+.+....-. .+.....| .++. -
T Consensus 249 ~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~----~p~~r~~~------~~~~--~- 315 (357)
T 2uvk_A 249 GISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE----LSQGRAYG------VSLP--W- 315 (357)
T ss_dssp EEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE----CSSCCBSS------EEEE--E-
T ss_pred EEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC----CCCCcccc------eeEE--e-
Confidence 23367777777632 257899998765443211 11111111 1222 1
Q ss_pred CCCEEEEEECCC------eEEEEeCCCCC
Q 001319 1046 EPNQFAIGLTDG------SVKVMEPSESE 1068 (1101)
Q Consensus 1046 d~~~l~s~~~Dg------~v~iWd~~~~~ 1068 (1101)
++.+++.||.++ .|.+.++++++
T Consensus 316 ~~~i~v~GG~~~~~~~~~~v~~l~~~~~~ 344 (357)
T 2uvk_A 316 NNSLLIIGGETAGGKAVTDSVLITVKDNK 344 (357)
T ss_dssp TTEEEEEEEECGGGCEEEEEEEEEC-CCS
T ss_pred CCEEEEEeeeCCCCCEeeeEEEEEEcCcE
Confidence 578999999764 35556777766
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.86 E-value=0.031 Score=59.17 Aligned_cols=200 Identities=10% Similarity=0.096 Sum_probs=108.6
Q ss_pred CEEEEEeCCCcEEEEEeecceEEEeeccC-CCCeeEEEE--c-CCCCEEEEE-eCCCcEEEEECCCCccccceEEeecCC
Q 001319 859 NIIAIGTEDSTIHIYNVRVDEVKSKLKGH-QKRITGLAF--S-TSLNILVSS-GADAQLCVWSIDTWEKRKSVTIHIPAG 933 (1101)
Q Consensus 859 ~~la~g~~dg~v~iwd~~~~~~~~~~~~h-~~~V~~l~~--s-~d~~~l~s~-s~Dg~v~lwd~~~~~~~~~~~~~~~~~ 933 (1101)
.++++++.||.|+-+|..+|+.+-.+... ..++....- . .++..++.. +.||.|..++..+|..+....+.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~ 90 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVS 90 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHT
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeecccccee
Confidence 47889999999999999999999887654 122222110 0 123333333 689999999998875442222111110
Q ss_pred CCCCCcceEEE------------cCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCC----CCEEEEEEc-----cCC
Q 001319 934 KTPTGDTRVQF------------NADQVRMLVVHETQLAIYDASKMERIRQWTPQDALS----APISCAVYS-----CNS 992 (1101)
Q Consensus 934 ~~~~~v~~~~~------------s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~----~~v~~v~~s-----~dg 992 (1101)
..-+.. +.++..++.+.++.+...|+.+|+.+..+....... ....|.... ..+
T Consensus 91 -----~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~ 165 (339)
T 2be1_A 91 -----TSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECE 165 (339)
T ss_dssp -----TCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------C
T ss_pred -----ccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCC
Confidence 011121 245544455679999999999999999887642100 001111111 124
Q ss_pred CEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCCCCCCcc
Q 001319 993 QLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW 1071 (1101)
Q Consensus 993 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~~~~~~~ 1071 (1101)
..|+.|..+..+.+.+ ++|+ +.......+....+ ...+. ..-..+. |+.+ +.++.||.|...|..+|+..|
T Consensus 166 ~~v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~---~~~~~-~~~~~s~-Dg~~-~~~~~dg~v~A~d~~~G~~~W 236 (339)
T 2be1_A 166 NMIVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVL---DVPLA-LQNTFSK-DGMC-IAPFRDKSLLASDLDFRIARW 236 (339)
T ss_dssp CEEEEEEEEEECEECC-TTSC-CCCCEEEEEECCTT---THHHH-TTCSSCS-SSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred CeEEEecceEEEEEEC-CCCC-eEEEeccccccccc---ccccc-ccccccc-CCcE-EEECCCCEEEEEECCCCcEEE
Confidence 5677788777777777 4553 21111000100000 00000 0000011 3455 557889999999999999888
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.31 Score=60.53 Aligned_cols=237 Identities=13% Similarity=0.160 Sum_probs=138.3
Q ss_pred EecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEE
Q 001319 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431 (1101)
Q Consensus 352 fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~ 431 (1101)
.+|..+ ++|.- ...++.|+|+++.+.+.... -...|..=.|-.+. .|+..+ +..|.
T Consensus 73 MnP~~~-iiALr-ag~~lQiFnl~~k~klks~~--------------------~~e~VvfWkWis~~-~l~lVT-~~aVy 128 (1630)
T 1xi4_A 73 MNPASK-VIALK-AGKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISLN-TVALVT-DNAVY 128 (1630)
T ss_pred cCCCcc-eEEEe-cCCeEEEeehHHhhhhcccc--------------------cCCCceEEEecCCC-eeEEEc-CCeEE
Confidence 466665 66654 36799999999877665311 13367777776444 444443 34699
Q ss_pred EEeecCCcccccceeeecc----cCcEEEEEEecCCCceEEEEe------cCCceEEEEEcCCceeEEeecCCcCeEEEe
Q 001319 432 LYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTC------GDDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 432 vwd~~~~~~~~~~~~l~~h----~~~V~~l~~s~d~~~~~l~s~------~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~ 501 (1101)
-|++.+...... .+..| ...|..-.-+++.+++ +++| .-.|.+.+|..+.+.-+.+.||.+.-..+.
T Consensus 129 HW~~~~~s~P~k--~fdR~~~L~~~QIinY~~d~~~kW~-~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha~~F~~~~ 205 (1630)
T 1xi4_A 129 HWSMEGESQPVK--MFDRHSSLAGCQIINYRTDAKQKWL-LLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK 205 (1630)
T ss_pred EeccCCCCccHH--HHhcchhcccCeeEEeeeCCCCCeE-EEEeeccCCCcccceeeeeecccccchhhhHhHhhhheec
Confidence 999976433222 23333 3467777888888862 3222 245788999977777777888877655554
Q ss_pred cccCCCccEEEE-ecc---CCeEEEEecCCC---Ceee-----eccC----CCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 502 PHHKENIQFIFS-TAI---DGKIKAWLYDTM---GSRV-----DYDA----PGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 502 ~~~~~~~~~l~s-~~~---d~~i~~wd~~~~---~~~~-----~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
+...+....|++ +.. .+.+++-++... ...+ .+.. ......++..|+.-..+...+. .|.
T Consensus 206 ~~~~~~~~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk----~G~ 281 (1630)
T 1xi4_A 206 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGY 281 (1630)
T ss_pred cCCCCCCceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEec----Cce
Confidence 432222222333 221 268888888553 1111 1111 1234557777777766666654 889
Q ss_pred EEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
|+++|+.++.++..-+-... .+...+......-++.....|.|.--.+.....+
T Consensus 282 ~~~~d~~t~~~i~~~ris~~-~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv 335 (1630)
T 1xi4_A 282 IHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLSVCVEEENII 335 (1630)
T ss_pred EEEEecccchhhhhccccCC-ceEEeccCCCCCceEEEcCCceEEEEEEccchhh
Confidence 99999999988766543333 3433333333344455556666655555544443
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=95.81 E-value=0.82 Score=56.94 Aligned_cols=266 Identities=12% Similarity=0.154 Sum_probs=141.1
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
...|.|.|+..+..+....- ...+.-.+|..+.++.-. ..++.|+|+.+...+....... .|.--.|-.+.
T Consensus 47 ~~~vvIidl~~~~~~~rrpi----~AdsAIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e---~VvfWkWis~~- 117 (1630)
T 1xi4_A 47 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISLN- 117 (1630)
T ss_pred CceEEEEECCCCCCcccccc----cchhhccCCCcceEEEec-CCeEEEeehHHhhhhcccccCC---CceEEEecCCC-
Confidence 44788889887664422211 122245778776666543 7899999999988887776643 35555554333
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
.|+..+ +..|.-|++.....+.+.+..+..-.
T Consensus 118 ~l~lVT-~~aVyHW~~~~~s~P~k~fdR~~~L~----------------------------------------------- 149 (1630)
T 1xi4_A 118 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSLA----------------------------------------------- 149 (1630)
T ss_pred eeEEEc-CCeEEEeccCCCCccHHHHhcchhcc-----------------------------------------------
Confidence 444444 45799999976444444444322211
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEee-------cCCeEEEEEecCCCCCC-CCCeeeeccccccccCCccce
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-------SNGVQKLWKWHRNEQNP-SGKATASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~v~~w~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 794 (1101)
...|.....+++.++++..| -.|.+.+|........+ +|.. +...
T Consensus 150 --------------~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~sQ~iegha-------------~~F~ 202 (1630)
T 1xi4_A 150 --------------GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHA-------------ASFA 202 (1630)
T ss_pred --------------cCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccccchhhhHhH-------------hhhh
Confidence 12233333344444443322 23677777665432211 1110 0111
Q ss_pred eeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCc---eE------EEEeeC---CCCCeeEEEEecCCCCEEE
Q 001319 795 ANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTF---KV------MTTFMS---PPPASTFLAFHPQDNNIIA 862 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~---~~------~~~~~~---~~~~i~~l~~s~~~~~~la 862 (1101)
...+.+..+...+.|.+.-. ..+++++|.++... .. +..+-. ...-..++..++ .-.++.
T Consensus 203 ~~~~~~~~~~~~l~~f~~~~-------~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~-k~g~iy 274 (1630)
T 1xi4_A 203 QFKMEGNAEESTLFCFAVRG-------QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVVF 274 (1630)
T ss_pred eeccCCCCCCceEEEEEEec-------CCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEecc-ccCEEE
Confidence 11111111222222222210 01368888887432 11 111111 122345677787 667788
Q ss_pred EEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 863 IGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 863 ~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
..+.-|.|++||+.++.++..-+-....|...+......-++.....|.|.--.++..
T Consensus 275 ~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~ 332 (1630)
T 1xi4_A 275 LITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEE 332 (1630)
T ss_pred EEecCceEEEEecccchhhhhccccCCceEEeccCCCCCceEEEcCCceEEEEEEccc
Confidence 8889999999999999887655444555555554444333444456666666555553
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=95.80 E-value=0.096 Score=56.19 Aligned_cols=126 Identities=17% Similarity=0.175 Sum_probs=79.6
Q ss_pred cEEEEEEecCCceEEEEEeccCcEEEEecCCCceecc-----ccce--eecccccCccccccccccCCccEEEEEEcc--
Q 001319 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS-----KPFK--IWDMAACSLPFQASIFKDVPISVSRVAWSP-- 416 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~-----~~~~--~~d~~~~~~~~~~~~~~~h~~~v~~~~~sp-- 416 (1101)
.|..+..||+|++| |.. .+..|.|-.+..+..... .+++ .|.+.. +......+|..+.|+|
T Consensus 67 ~i~qlvlSpsG~lL-Al~-g~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~--------~~~~~~s~I~qVlWHPl~ 136 (452)
T 3pbp_A 67 DTFHVISSTSGDLL-CLF-NDNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDE--------EEVGPKSSIKKVLFHPKS 136 (452)
T ss_dssp TTCEEEECTTSSEE-EEE-CSSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGG--------CC--CCCCEEEEEECTTB
T ss_pred ceeEEEECCCCCEE-EEe-cCCeEEEEEecCccccCcccccccccceeEEEcCC--------cccCCCCceeEEEecccc
Confidence 68889999999955 543 456899988874432221 1111 111110 0111367899999999
Q ss_pred -CCCEEEEEECCCeEEEEeecCCccccc-c------eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 417 -DGNYVGVAFTKHLIQLYSYAGSNDLRQ-H------SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 417 -dg~~las~~~d~~i~vwd~~~~~~~~~-~------~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
.|..|++-..|+.|++||+........ + ..+......|.+++|..++-.+++++....|.|+-.-
T Consensus 137 ~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAlc 209 (452)
T 3pbp_A 137 YRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAFY 209 (452)
T ss_dssp GGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEES
T ss_pred CCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEEC
Confidence 466899999999999999986332111 0 0111233578899999887766666666777766544
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.78 E-value=0.82 Score=48.44 Aligned_cols=227 Identities=11% Similarity=0.015 Sum_probs=106.8
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC----Cc-------eEEEEE-cCCcee
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD----DK-------LIKVWE-LSGRKL 487 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~----d~-------~v~iwd-~~~~~~ 487 (1101)
.++.|+. .+..||..+++-.. ..+..........+...++. +++.|+. ++ .+.++| .+++-
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~--~~~~~~~~r~~~~~~~~~~~--lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W- 90 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYL--TALAEQIPRNHSSIVTQQNQ--VYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW- 90 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEE--EEECTTSCSSEEEEECSSSC--EEEEESSCC-------CCCBEEEEEETTTTEE-
T ss_pred hhhcccc--ceEEECCCCCceec--ccCCccCCccceEEEEECCE--EEEECCcccCccccCCCccccEEEEeCCCCcE-
Confidence 3444443 37889988765322 12221112222223344555 6666662 11 267788 44432
Q ss_pred EEee---cCCcCeEEEecccCCCccEEEEeccC-------CeEEEEecCCCCeeeeccCCCCce-EEEEEccCCCEEEEe
Q 001319 488 FNFE---GHEAPVYSICPHHKENIQFIFSTAID-------GKIKAWLYDTMGSRVDYDAPGHWC-TTMLYSADGSRLFSC 556 (1101)
Q Consensus 488 ~~~~---~h~~~v~~v~~~~~~~~~~l~s~~~d-------~~i~~wd~~~~~~~~~~~~~~~~v-~~~~~s~d~~~l~~~ 556 (1101)
..+. ........+.+ ++.+++.|+.+ ..+.+||..+.+=...-..+.... .+++. .+++.++.|
T Consensus 91 ~~~~~~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~G 165 (318)
T 2woz_A 91 VGLPPLPSARCLFGLGEV----DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLG 165 (318)
T ss_dssp EECSCBSSCBCSCEEEEE----TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEEC
T ss_pred EECCCCCccccccceEEE----CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEc
Confidence 2221 11111122222 44677777754 246777776543222211111111 12222 466777776
Q ss_pred ecCCC--CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCC-----CcEEEEECCCCeeeEeeccCCCC
Q 001319 557 GTSKD--GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGED-----SQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 557 ~~~~~--~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d-----g~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
+...+ ....+.+||+.+.+-...-..........++. -++..++.||.+ ..+.+||..+.+....-.....
T Consensus 166 G~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~- 243 (318)
T 2woz_A 166 GKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAI-HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE- 243 (318)
T ss_dssp CEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEE-ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-
T ss_pred CCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEE-ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-
Confidence 64211 13458999998876554422222111122222 245666667643 3577899887765443222211
Q ss_pred CCCCeeEEecCCCEEEEEEcC--------------CcEEEEEcccc
Q 001319 630 PNLPRLRFSKEGNLLAVTTAD--------------NGFKILANAIG 661 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d--------------~~i~iwd~~~~ 661 (1101)
.....+..-++++++.|+.+ ..+.+||..+.
T Consensus 244 -r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 244 -RSSISLVSLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp -CBSCEEEEETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred -ccceEEEEECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 11222223366677776643 34666776554
|
| >1uuj_A Platelet-activating factor acetylhydrolase IB ALP subunit; mitosis, neuroge cytoskeleton, cell division, microtubule; 1.75A {Mus musculus} SCOP: a.221.1.1 | Back alignment and structure |
|---|
Probab=95.57 E-value=0.009 Score=47.22 Aligned_cols=53 Identities=19% Similarity=0.283 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC--HHHHHHHHhccCHHHHHHHH
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYL 57 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l 57 (1101)
++|+.+-|++||...||.+++.+|.+|.|+..+ ...-.+-+++-.|..++.+-
T Consensus 10 ~eEL~kaI~~YL~~~~~~~~~~alr~e~~~~~~~~~~~ky~gLLEKKWTSViRLQ 64 (88)
T 1uuj_A 10 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQ 64 (88)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHhcCCCCchhhhhhhhhhhhhHHHHHHHH
Confidence 679999999999999999999999999998875 11234445556665444443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=95.53 E-value=2.8 Score=43.68 Aligned_cols=204 Identities=9% Similarity=0.110 Sum_probs=115.0
Q ss_pred EEEccCCCEEEEEECC--------------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe--cCCc
Q 001319 412 VAWSPDGNYVGVAFTK--------------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC--GDDK 475 (1101)
Q Consensus 412 ~~~spdg~~las~~~d--------------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~--~~d~ 475 (1101)
--++++|++|+.+... ..|+..++++++... +... . +..|+++++.++++.. ....
T Consensus 58 ~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~----l~~~--~--~~~~s~~g~~Iy~~~~~~~~~~ 129 (302)
T 3s25_A 58 MYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTV----LDPD--P--CIYASLIGNYIYYLHYDTQTAT 129 (302)
T ss_dssp EEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEE----EECS--C--EEEEEEETTEEEEEEESSSSCE
T ss_pred eeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceE----eecC--C--ccEEEEeCCEEEEEeecCCCCc
Confidence 3457899999887643 357777777765322 2221 1 2378889986444432 2344
Q ss_pred eEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEE
Q 001319 476 LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 476 ~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 554 (1101)
.|..-+.+|.....+..+.. .++.+ +++.|+-.+. ..+|..-+++.......+.. ... ..+.|++.+|+
T Consensus 130 ~Iy~~~~dGs~~~~lt~~~~----~~~~~--~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~~~-~~~~P~g~~iy 199 (302)
T 3s25_A 130 SLYRIRIDGEEKKKIKNHYL----FTCNT--SDRYFYYNNPKNGQLYRYDTASQSEALFYDC---NCY-KPVVLDDTNVY 199 (302)
T ss_dssp EEEEEETTSCCCEEEESSCC----CCSEE--ETTEEEEECTTTCCEEEEETTTTEEEEEECS---CEE-EEEEEETTEEE
T ss_pred eEEEEECCCCCeEEEeCCCc----eEeeE--ECCEEEEEeCCCceEEEEECCCCCEEEEeCC---Ccc-ceeeecCCEEE
Confidence 55555577776666765543 34444 4455654443 67788888766554443331 122 34569999998
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe--CCCcEEEEECCCCeeeEeeccCCCCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG--EDSQIKFWDMDNVNILTSTDAEGGLPNL 632 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~--~dg~i~iwd~~~~~~~~~~~~~~~~~~v 632 (1101)
-.... ....|..-++..+... .+.. . .+ ..++|++++|+.+. ..+.|..-++........... .+
T Consensus 200 ~t~~~--~~~~I~~~~ldG~~~~-~Lt~--~-~~--~~~~~~g~~Iy~~~~~~~~~i~~~~~DG~~r~~l~~~-----~~ 266 (302)
T 3s25_A 200 YMDVN--RDNAIVHVNINNPNPV-VLTE--A-NI--EHYNVYGSLIFYQRGGDNPALCVVKNDGTGFKELAKG-----EF 266 (302)
T ss_dssp EEEGG--GTTEEEEECSSSCCCE-ECSC--S-CE--EEEEEETTEEEEEECSSSCEEEEEETTSCCCEEEEES-----CE
T ss_pred EEEcC--CCcEEEEEECCCCCeE-EEeC--C-Cc--ceEEECCCEEEEEECCCCcEEEEEECCCCccEEeeCC-----cc
Confidence 76542 1246777777655432 2321 1 22 34888898888763 345677777754333222221 12
Q ss_pred CeeEEecCCCEEEEEE
Q 001319 633 PRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 633 ~~v~~s~~g~~l~~~~ 648 (1101)
..+++.+.+|+-..
T Consensus 267 --~~i~i~~d~Iy~td 280 (302)
T 3s25_A 267 --CNINVTSQYVYFTD 280 (302)
T ss_dssp --EEEEECSSEEEEEE
T ss_pred --ceEEEeCCEEEEEE
Confidence 24455666666654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=95.42 E-value=0.52 Score=50.04 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=97.2
Q ss_pred ecCCCCeEEEEc-C----C-------eEEEEECCCceEEEEeeCCCCC-eeEEEEecCCCCEEEEEeCC-------CcEE
Q 001319 812 LSKNDSYVMSAT-G----G-------KISLFNMMTFKVMTTFMSPPPA-STFLAFHPQDNNIIAIGTED-------STIH 871 (1101)
Q Consensus 812 ~s~dg~~la~~~-d----g-------~i~vwd~~~~~~~~~~~~~~~~-i~~l~~s~~~~~~la~g~~d-------g~v~ 871 (1101)
...++++++.|+ . + .+.+||..+.+-...-...... -.+++.. ++++++.|+.+ ..+.
T Consensus 53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~ 130 (318)
T 2woz_A 53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL 130 (318)
T ss_dssp ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence 345677777765 1 1 1778888765543221111111 1222222 56778888754 2577
Q ss_pred EEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEc
Q 001319 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFN 945 (1101)
Q Consensus 872 iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 945 (1101)
+||..+.+-...-......-...+...+++.++.|+.+ ..+.+||..+.+-...... . .......++.
T Consensus 131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~--p---~~r~~~~~~~- 204 (318)
T 2woz_A 131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPM--K---TPRSMFGVAI- 204 (318)
T ss_dssp EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCC--S---SCCBSCEEEE-
T ss_pred EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCC--C---CCcccceEEE-
Confidence 88887654322111111111111222467777777642 3589999988653322111 1 1111122222
Q ss_pred CCCCEEEEEe-C-----CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC--------------CcEE
Q 001319 946 ADQVRMLVVH-E-----TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD--------------GNIG 1005 (1101)
Q Consensus 946 ~d~~~l~~~~-d-----~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d--------------g~i~ 1005 (1101)
-+++.++.|. + ..+.+||..+.+-...-..... ......+. .++++++.|+.+ ..+.
T Consensus 205 ~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~--~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~ 281 (318)
T 2woz_A 205 HKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQE-RSSISLVS--LAGSLYAIGGFAMIQLESKEFAPTEVNDIW 281 (318)
T ss_dssp ETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSC-CBSCEEEE--ETTEEEEECCBCCBC----CCBCCBCCCEE
T ss_pred ECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCc-ccceEEEE--ECCEEEEECCeeccCCCCceeccceeeeEE
Confidence 3556666643 1 4578899887654332211111 11112222 367777777654 4588
Q ss_pred EEeCCCCceeEe
Q 001319 1006 VFDADTLRLRCY 1017 (1101)
Q Consensus 1006 vwd~~~~~~~~~ 1017 (1101)
+||+.+.+-...
T Consensus 282 ~yd~~~~~W~~~ 293 (318)
T 2woz_A 282 KYEDDKKEWAGM 293 (318)
T ss_dssp EEETTTTEEEEE
T ss_pred EEeCCCCEehhh
Confidence 899988765544
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=95.39 E-value=3.4 Score=43.77 Aligned_cols=109 Identities=14% Similarity=0.070 Sum_probs=64.4
Q ss_pred CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE--Eec---ccCCcceEEEEEeCC---CCEEEEE---eCC
Q 001319 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR--TYA---GFRKKSNGVVQFDTT---QNHFLAV---GED 606 (1101)
Q Consensus 538 ~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~--~~~---~~~~~~v~~~~~~~~---~~~l~~~---~~d 606 (1101)
-.....|+|.|||+.+++-- ..+.|++++..+++... .+. .........++++|+ +..|++. ..+
T Consensus 31 L~~P~~ia~~pdG~llVter----~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~ 106 (347)
T 3das_A 31 LNSPWGLAPLPGGDLLVSSR----DEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASD 106 (347)
T ss_dssp CSSEEEEEECTTSCEEEEET----TTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSS
T ss_pred CCCceEEEEcCCCcEEEEEe----cCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCC
Confidence 34578999999999877753 26789999876655422 221 111234667999995 4555543 245
Q ss_pred CcEEEEECCCC----------eee-EeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 607 SQIKFWDMDNV----------NIL-TSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 607 g~i~iwd~~~~----------~~~-~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
+.|.-|....+ +.+ ..+.. ........++|.|||.+.++.+..+
T Consensus 107 ~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~-~~~H~g~~l~fgpDG~Lyvt~Gd~~ 161 (347)
T 3das_A 107 NRIVRMLYDEKKPSGEQLGAPDTVFRGIPK-GVIHNGGRIAFGPDKMLYAGTGESG 161 (347)
T ss_dssp EEEEEEEBCTTSCTTCCBCCCEEEEEEECC-CSSCCCCCEEECTTSCEEEECBCTT
T ss_pred CEEEEEEeCCCCcccccCCCcEEEEEcCCC-CCCccCccccCCCCCCEEEEECCCC
Confidence 56777766541 111 12221 1112346799999997766655433
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=95.13 E-value=0.075 Score=51.32 Aligned_cols=145 Identities=12% Similarity=0.018 Sum_probs=81.2
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceE------EEEeeC-CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecc
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKV------MTTFMS-PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD 878 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~------~~~~~~-~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~ 878 (1101)
.+..++|+|+|.+.++ .+|.++-.+..+... -..+-. --..-.++.|.| ++.+.++ .||.|+-++-.+.
T Consensus 42 ~~~~laf~P~G~LYaV-~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F~a~~fD~-~G~LYav--~dG~iyr~~pP~~ 117 (236)
T 1tl2_A 42 NFKFLFLSPGGELYGV-LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQFQFLFFDP-NGYLYAV--SKDKLYKASPPQS 117 (236)
T ss_dssp TCSEEEECTTSCEEEE-ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGCSEEEECT-TSCEEEE--ETTEEEEESCCCS
T ss_pred cceeEEECCCccEEEE-eCCeEEEECCCCCCcccccccccEecccccccceEEEECC-CCCEEEe--CCCEEEEeCCCcC
Confidence 5679999999998888 888877766644211 111110 001137889999 8888777 5698887765331
Q ss_pred eEE------Eee-ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce--EEeecCCCCCCCcceEEEcCCCC
Q 001319 879 EVK------SKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV--TIHIPAGKTPTGDTRVQFNADQV 949 (1101)
Q Consensus 879 ~~~------~~~-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~--~~~~~~~~~~~~v~~~~~s~d~~ 949 (1101)
..- ..+ .+-=..+..|.|.|+|.+.+.. |+.+.-+.--++...... ....-.+.. ..-+.+.|.+++.
T Consensus 118 ~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~-~~yr~l~f~~~G~ 194 (236)
T 1tl2_A 118 DTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGW-DTFKFLFFSSVGT 194 (236)
T ss_dssp TTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSG-GGEEEEEECTTSC
T ss_pred CCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCc-ceEEEEEECCCCc
Confidence 110 011 1111467999999999887766 776543322221111000 000000000 2334566888888
Q ss_pred EEEEEeCCe
Q 001319 950 RMLVVHETQ 958 (1101)
Q Consensus 950 ~l~~~~d~~ 958 (1101)
+.++. ++.
T Consensus 195 l~~v~-~g~ 202 (236)
T 1tl2_A 195 LFGVQ-GGK 202 (236)
T ss_dssp EEEEE-TTE
T ss_pred EEEEe-CCe
Confidence 87777 553
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=94.90 E-value=6.1 Score=43.98 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=61.6
Q ss_pred CCcEEEEEEecCCceEEEEEecc-CcEEEEecCCCceeccccceeecccccCcccccccc--ccCCccEEEEEEccC---
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSN-GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIF--KDVPISVSRVAWSPD--- 417 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d-~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~--~~h~~~v~~~~~spd--- 417 (1101)
-...++|+|.|||+ |+++- .. +.|++++..++..... . ++ .. .+ .........|+|+||
T Consensus 26 l~~P~~~a~~pdG~-l~V~e-~~gg~I~~~~~~~g~~~~~---~--~~-------~~-~~~~~~g~~Gllgia~~Pdf~~ 90 (454)
T 1cru_A 26 LNKPHALLWGPDNQ-IWLTE-RATGKILRVNPESGSVKTV---F--QV-------PE-IVNDADGQNGLLGFAFHPDFKN 90 (454)
T ss_dssp CSSEEEEEECTTSC-EEEEE-TTTCEEEEECTTTCCEEEE---E--EC-------TT-CCCCTTSSCSEEEEEECTTTTT
T ss_pred CCCceEEEEcCCCc-EEEEE-cCCCEEEEEECCCCcEeEE---e--cC-------Cc-cccccCCCCceeEEEECCCcCc
Confidence 34788999999998 65554 45 4688887655543210 0 00 00 11 113567889999996
Q ss_pred CCEEEEEEC-------------CCeEEEEeecCCc-cc---ccce-eee-cccCcEEEEEEecCCCceEEEEe
Q 001319 418 GNYVGVAFT-------------KHLIQLYSYAGSN-DL---RQHS-QID-AHVGAVNDLAFAYPNKLLCVVTC 471 (1101)
Q Consensus 418 g~~las~~~-------------d~~i~vwd~~~~~-~~---~~~~-~l~-~h~~~V~~l~~s~d~~~~~l~s~ 471 (1101)
+.+|.++.. ...|.-|+...+. .+ +.+. .+. ........|+|.|||. +++.+|
T Consensus 91 ~g~lYv~~s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~-Lyv~~G 162 (454)
T 1cru_A 91 NPYIYISGTFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQK-IYYTIG 162 (454)
T ss_dssp SCEEEEEEEEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSC-EEEEEC
T ss_pred CCEEEEEEeccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCe-EEEEEC
Confidence 555554432 2356666665331 01 1111 111 1122478999999997 244444
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=94.78 E-value=0.16 Score=49.07 Aligned_cols=147 Identities=13% Similarity=0.083 Sum_probs=83.1
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE------Eee-c-cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECC
Q 001319 847 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK------SKL-K-GHQKRITGLAFSTSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~------~~~-~-~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
.++.++|+| ++.+.++ .+|.++-.+..++... ..+ . +-.. -.++.|.|+|.+.++ .||.|.-++--
T Consensus 42 ~~~~laf~P-~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~-F~a~~fD~~G~LYav--~dG~iyr~~pP 115 (236)
T 1tl2_A 42 NFKFLFLSP-GGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQ-FQFLFFDPNGYLYAV--SKDKLYKASPP 115 (236)
T ss_dssp TCSEEEECT-TSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGG-CSEEEECTTSCEEEE--ETTEEEEESCC
T ss_pred cceeEEECC-CccEEEE--eCCeEEEECCCCCCcccccccccEeccccccc-ceEEEECCCCCEEEe--CCCEEEEeCCC
Confidence 677999999 8987777 6777666555432110 111 0 1111 478999999988877 56988877653
Q ss_pred CCccccceE--EeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceee-----eEeccCCCCCCCEEEEEEccC
Q 001319 919 TWEKRKSVT--IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERI-----RQWTPQDALSAPISCAVYSCN 991 (1101)
Q Consensus 919 ~~~~~~~~~--~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~-----~~~~~~~~h~~~v~~v~~s~d 991 (1101)
+.......- ..+-.+.- ..+..+.|.|+|.+.++. |+.++-....+.... ...... .....-+-+.|+++
T Consensus 116 ~~~~~~Wl~~a~~vg~~gw-~~~~~lff~p~G~Lyav~-dg~lyr~~~P~~~~~~wl~~~~~~g~-~g~~~yr~l~f~~~ 192 (236)
T 1tl2_A 116 QSDTDNWIARATEVGSGGW-SGFKFLFFHPNGYLYAVH-GQQFYKALPPVSNQDNWLARATKIGQ-GGWDTFKFLFFSSV 192 (236)
T ss_dssp CSTTCCHHHHSEEEECSSG-GGEEEEEECTTSCEEEEE-TTEEEEECCCSSTTCCHHHHCEEEES-SSGGGEEEEEECTT
T ss_pred cCCCCceeccccEeccCCC-CceEEEEECCCceEEEEe-CCcEEecCCCCCCCcccccccceecc-CCcceEEEEEECCC
Confidence 322111100 00000000 356889999999999988 888644333322100 011010 11334555778999
Q ss_pred CCEEEEEeCCCcE
Q 001319 992 SQLVFATFCDGNI 1004 (1101)
Q Consensus 992 g~~l~s~~~dg~i 1004 (1101)
|.+.++. +|.+
T Consensus 193 G~l~~v~--~g~~ 203 (236)
T 1tl2_A 193 GTLFGVQ--GGKF 203 (236)
T ss_dssp SCEEEEE--TTEE
T ss_pred CcEEEEe--CCeE
Confidence 8876665 6633
|
| >2nxp_A Transcription initiation factor TFIID subunit 5; transcription factor, TAF5; 2.17A {Homo sapiens} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=94.71 E-value=0.083 Score=48.54 Aligned_cols=79 Identities=13% Similarity=0.265 Sum_probs=61.1
Q ss_pred hHHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHH
Q 001319 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (1101)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1101)
.++|+|+-|.||||+..|..++|..|+++.-.-+.....+.+++|..+....+..+++....+.. .+.+-..|
T Consensus 51 ~lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~~~~l~~n~~~~~fr~~Ky~I~ls~~s~~lL 130 (156)
T 2nxp_A 51 QLFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLL 130 (156)
T ss_dssp GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhcHHHHHHHhCCeEEEECHHHHHHH
Confidence 39999999999999999999999999987655555566788999998887777766666655554 34445667
Q ss_pred HHHHHh
Q 001319 144 LIELKK 149 (1101)
Q Consensus 144 ~~~l~~ 149 (1101)
+.-|++
T Consensus 131 ~~fL~~ 136 (156)
T 2nxp_A 131 KRHLQE 136 (156)
T ss_dssp HHHHTT
T ss_pred HHHHHH
Confidence 766666
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.54 E-value=1.6 Score=47.07 Aligned_cols=119 Identities=8% Similarity=-0.021 Sum_probs=54.1
Q ss_pred CccEEEEeccC------CeEEEEecCCCCeeeeccC----CCCceEEEEEccCCCEEEEeecCCCCC-------------
Q 001319 507 NIQFIFSTAID------GKIKAWLYDTMGSRVDYDA----PGHWCTTMLYSADGSRLFSCGTSKDGD------------- 563 (1101)
Q Consensus 507 ~~~~l~s~~~d------~~i~~wd~~~~~~~~~~~~----~~~~v~~~~~s~d~~~l~~~~~~~~~~------------- 563 (1101)
++.+++.|+.+ ..+.+||++.....+.... ........+...+++.++.|+.+.++.
T Consensus 200 ~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~ 279 (357)
T 2uvk_A 200 GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHE 279 (357)
T ss_dssp TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTT
T ss_pred CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccceEEEECCEEEEEcCccccCCcccccccceeccc
Confidence 44667777643 3466677633333332211 111111122334667777776422110
Q ss_pred -----ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC------cEEEEECCCCeeeEeeccC
Q 001319 564 -----SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS------QIKFWDMDNVNILTSTDAE 626 (1101)
Q Consensus 564 -----~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~~~ 626 (1101)
..+.+||+.+.+-...-..... .....++..+++.++.||.++ .|.++++++++.+.....+
T Consensus 280 ~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~~~ 352 (357)
T 2uvk_A 280 GLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNLEH 352 (357)
T ss_dssp TCCCEECCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC---
T ss_pred cccceeeEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeeccc
Confidence 3578899887654433221111 111122334567777787542 4666788887776665443
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=94.38 E-value=7.9 Score=43.01 Aligned_cols=55 Identities=15% Similarity=0.068 Sum_probs=35.7
Q ss_pred cEEEEEEccCCC-EEEEEECCCeEEEEeecCCcccccceee-----e----cccCcEEEEEEecC
Q 001319 408 SVSRVAWSPDGN-YVGVAFTKHLIQLYSYAGSNDLRQHSQI-----D----AHVGAVNDLAFAYP 462 (1101)
Q Consensus 408 ~v~~~~~spdg~-~las~~~d~~i~vwd~~~~~~~~~~~~l-----~----~h~~~V~~l~~s~d 462 (1101)
.-..|+|.|||. .|+++...|.|++++.........+..+ . +..+....|+|+|+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~ 79 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPN 79 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTT
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCC
Confidence 567899999996 5666778999999975432111111111 1 12456889999997
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.36 E-value=0.12 Score=54.71 Aligned_cols=190 Identities=10% Similarity=0.063 Sum_probs=103.3
Q ss_pred EEEEecCCceEEEEE-cCCceeEEeecC-CcCeEEEeccc-CCCccEEEEe-ccCCeEEEEecCCCCeeeeccCC----C
Q 001319 467 CVVTCGDDKLIKVWE-LSGRKLFNFEGH-EAPVYSICPHH-KENIQFIFST-AIDGKIKAWLYDTMGSRVDYDAP----G 538 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd-~~~~~~~~~~~h-~~~v~~v~~~~-~~~~~~l~s~-~~d~~i~~wd~~~~~~~~~~~~~----~ 538 (1101)
+++.++.||.|.-.| .+|+.+.++... ..++....-.. ..++..++.. +.||.|..++..++.....+... .
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv~~ 91 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLVST 91 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHHTT
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccceec
Confidence 578888999999999 899998888654 12333221111 1133344443 68999999998776544432211 1
Q ss_pred CceEE---EEE-----ccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcc------eEEEEEe-----CCCCE
Q 001319 539 HWCTT---MLY-----SADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKS------NGVVQFD-----TTQNH 599 (1101)
Q Consensus 539 ~~v~~---~~~-----s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~------v~~~~~~-----~~~~~ 599 (1101)
.++.. ..+ +..+..+++++. ++.+...|..+|+.+..+....... ..+.... ..+..
T Consensus 92 SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~----~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~ 167 (339)
T 2be1_A 92 SPLHLKTNIVVNDSGKIVEDEKVYTGSM----RTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENM 167 (339)
T ss_dssp CSEEEECC----------CCEEEEECEE----EEEEEEEETTTCCEEEEESTTCBCC--------------------CCE
T ss_pred cccccCCCceeecccccccCCEEEEEec----CCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCe
Confidence 11111 000 013456667765 8899999999999999987542111 0011110 12356
Q ss_pred EEEEeCCCcEEEEECCCCeeeEeeccCCC-CCCCC-----eeEEecCCCEEEEEEcCCcEEEEEcccccc
Q 001319 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLP-----RLRFSKEGNLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 600 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~-----~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
++.+..+..+.+.+ ++|+ +..+..... ...+. .-..+.|+.. ++++.||.|..+|..++..
T Consensus 168 v~ig~~~y~v~~~~-~sG~-~W~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~ 234 (339)
T 2be1_A 168 IVIGKTIFELGIHS-YDGA-SYNVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIA 234 (339)
T ss_dssp EEEEEEEEECEECC-TTSC-CCCCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCE
T ss_pred EEEecceEEEEEEC-CCCC-eEEEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcE
Confidence 77777777777766 3443 222110000 00000 0111234665 5578899999998887743
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=94.35 E-value=2.1 Score=47.47 Aligned_cols=192 Identities=9% Similarity=0.141 Sum_probs=114.4
Q ss_pred CCCeEEEEc--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEe--cCCCCEEEEEeC-------CCcE---------EEE
Q 001319 815 NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFH--PQDNNIIAIGTE-------DSTI---------HIY 873 (1101)
Q Consensus 815 dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s--~~~~~~la~g~~-------dg~v---------~iw 873 (1101)
||++|...+ +.+|...+++..++...+..+ ...+..++|- | +..+++.+++ ||.. .+|
T Consensus 141 DGrylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p-~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f 219 (638)
T 3sbq_A 141 DGKYLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVP-HTKYVFANAEFIIPHPNDGKVFDLQDENSYTMY 219 (638)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSS-BCCEEEEEECSCEESSCSSSCCCTTSTTEEEEE
T ss_pred eeEEEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccC-CccEEEecceeeccCCCCCcccccCChhhceEE
Confidence 788998887 577999999999887766653 3468888886 5 6677777763 3332 111
Q ss_pred Ee---ecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC---------------cEEEEECCC-------Cc--ccc--
Q 001319 874 NV---RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA---------------QLCVWSIDT-------WE--KRK-- 924 (1101)
Q Consensus 874 d~---~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg---------------~v~lwd~~~-------~~--~~~-- 924 (1101)
.. .+.+....+.- .+..-.+...++|++.++.+.+. .+.++++.. |+ ...
T Consensus 220 ~~iD~~tm~v~~Qv~v-~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~ 298 (638)
T 3sbq_A 220 NAIDAETMEMAFQVIV-DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDS 298 (638)
T ss_dssp EEEETTTCSEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTC
T ss_pred EEEcCCccEEEEEEEc-CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCC
Confidence 11 11111111110 12333455567777777765431 244554321 11 000
Q ss_pred -ceEEeecC----C-------CCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCcee-------------eeEeccCC
Q 001319 925 -SVTIHIPA----G-------KTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER-------------IRQWTPQD 977 (1101)
Q Consensus 925 -~~~~~~~~----~-------~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~-------------~~~~~~~~ 977 (1101)
...+.... + ..+.....+.++|||++++++. +.++.|+|.++... +.....
T Consensus 299 gv~ViD~~~~~~~~~~~~~~iP~pksPHGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~-- 376 (638)
T 3sbq_A 299 KTPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPEL-- 376 (638)
T ss_dssp CCCEEECSCBTTBCCSSEEEEEESSSCCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBC--
T ss_pred CeeEEccccccccCCceEEEEeCCCCCcceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccC--
Confidence 00010000 0 0014556789999999999976 78999999885321 222222
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCC
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTL 1012 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~ 1012 (1101)
.......+|.++|.-..|-.-|..|.-|++...
T Consensus 377 --GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~a 409 (638)
T 3sbq_A 377 --GLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEEA 409 (638)
T ss_dssp --CSCEEEEEECSSSEEEEEETTTTEEEEEEHHHH
T ss_pred --CCcccEEEECCCCceEeeeeecceEEEEeccHH
Confidence 566788999999954556678999999999864
|
| >2j4b_A TAF5, transcription initiation factor TFIID subunit 72/ kDa; WD repeat; 2.5A {Encephalitozoon cuniculi} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=94.07 E-value=0.041 Score=49.21 Aligned_cols=77 Identities=12% Similarity=0.219 Sum_probs=56.9
Q ss_pred HHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHHH
Q 001319 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1101)
Q Consensus 72 ~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1101)
++|+|+-|.||||+..|..++|..|+.+.-.-+... .+.+++|..+....+..+++....+.. .+.+-..|+
T Consensus 33 lLyPlFvh~yL~Lv~~g~~~~A~~F~~~f~~~~~~~-~~~i~~L~~i~~~e~l~~n~~~~~fr~nKy~I~ls~~s~~lL~ 111 (138)
T 2j4b_A 33 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHYNK-SEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 111 (138)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--C-HHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChHHHHHHHHHHhHHHhhH-HHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHHHHHHH
Confidence 999999999999999999999999998766555555 788888888777766655555443332 344556677
Q ss_pred HHHHh
Q 001319 145 IELKK 149 (1101)
Q Consensus 145 ~~l~~ 149 (1101)
.-|++
T Consensus 112 ~fL~~ 116 (138)
T 2j4b_A 112 NFLEE 116 (138)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77766
|
| >2j49_A Transcription initiation factor TFIID subunit 5; nuclear protein, transcription regulation, TA TFIID, WD repeat; 2.3A {Saccharomyces cerevisiae} SCOP: d.379.1.1 | Back alignment and structure |
|---|
Probab=94.05 E-value=0.03 Score=50.59 Aligned_cols=81 Identities=19% Similarity=0.265 Sum_probs=54.4
Q ss_pred cchhhHHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHH
Q 001319 67 RYSMKIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTA 139 (1101)
Q Consensus 67 ~~~~~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~ 139 (1101)
++.. ++|+|+.|.||||+..| .++|..|+.+.-.-+.....+.+++|..+....+..+++....+.. .+.+
T Consensus 31 EL~~-lLyPlFvh~yL~Lv~~g-~~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~hl~~n~~~~~fr~nKy~I~ls~~s 108 (148)
T 2j49_A 31 ELSY-IMYPIFIYLFLNLVAKN-PVYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTT 108 (148)
T ss_dssp HHHH-HHHHHHHHHHHHHHHHC-HHHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHH
T ss_pred HHHH-HHHHHHHHHHHHHHHcC-HHHHHHHHHHHhHHhHHHHHHHHHHHhcCCCHHHHhhCHHHHHHHhCCeEEEECHHH
Confidence 3344 99999999999999999 9999999986554443445566777776666555554444443333 3444
Q ss_pred HHHHHHHHHh
Q 001319 140 RGIMLIELKK 149 (1101)
Q Consensus 140 r~~l~~~l~~ 149 (1101)
-..|+..|++
T Consensus 109 ~~lL~~fL~~ 118 (148)
T 2j49_A 109 LNLLLYFLNE 118 (148)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 4566666655
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=92.53 E-value=21 Score=42.16 Aligned_cols=249 Identities=8% Similarity=0.028 Sum_probs=122.8
Q ss_pred EEEEE-EecCCceEEEEEecc----CcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 347 VISMD-FHPSHQTLLLVGSSN----GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 347 V~~v~-fspdg~~llasg~~d----~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
...+. ++|||++++++-|.. ..|+++|+.+++.+.. .|. ...+.. ++ -......++|..++..+
T Consensus 131 ~~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~-~~~-~~~k~~------~~---~~~~~~~~~W~d~~~~~ 199 (711)
T 4hvt_A 131 YRGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKN-GFE-PITNSG------KL---LEGKFTYPTWINKDTII 199 (711)
T ss_dssp EEEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTT-CSC-CBCTTC------CB---CCEETCCEEEEETTEEE
T ss_pred EeceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCC-Ccc-cccccc------cc---cccccceeeEECCCEEE
Confidence 33444 899999776654433 3899999999887642 111 000000 00 00112344776333333
Q ss_pred EEE----------ECCCeEEEEeecCCcccccceeeecccCcE-EEEEEecCCCce---EEEEecCC---ceEEEEEcC-
Q 001319 422 GVA----------FTKHLIQLYSYAGSNDLRQHSQIDAHVGAV-NDLAFAYPNKLL---CVVTCGDD---KLIKVWELS- 483 (1101)
Q Consensus 422 as~----------~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V-~~l~~s~d~~~~---~l~s~~~d---~~v~iwd~~- 483 (1101)
++. +....|+.|.+-+...-.. ..+.+....+ .....+++++.. .+++.+.+ ..+.+.|..
T Consensus 200 ~~~~~~~~~~~~~~~~~~v~~~~~Gt~~~~~~-~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~ 278 (711)
T 4hvt_A 200 FNLVLHKNEITSSLYPNSLYIWKRGESIEKAK-KLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKY 278 (711)
T ss_dssp ECCCCSTTCBCTTSSBCEEEEEETTSCGGGCE-EEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSS
T ss_pred EEeCCCCCCcCcCCCCCEEEEEECCCChHHCe-EEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCC
Confidence 321 1124688887766432111 1233333333 345556677641 35544322 345566633
Q ss_pred --CceeEEeecCCcCeEEEecccCCCccEEEEec----------cCCeEEEEecCCCC-------eeee-c-cCCCCceE
Q 001319 484 --GRKLFNFEGHEAPVYSICPHHKENIQFIFSTA----------IDGKIKAWLYDTMG-------SRVD-Y-DAPGHWCT 542 (1101)
Q Consensus 484 --~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~----------~d~~i~~wd~~~~~-------~~~~-~-~~~~~~v~ 542 (1101)
++ +..+....... +..+. ++.+++... ..+.|...++.+.. .... + ......+.
T Consensus 279 ~~~~-~~~l~~~~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 353 (711)
T 4hvt_A 279 KNLK-LQKINMPSDAT--LQGSF--KEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFN 353 (711)
T ss_dssp SSCE-EEECCSCTTCE--EEEEE--TTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEE
T ss_pred CCCc-ceEeecCCcce--EeeeE--CCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEE
Confidence 43 23332222211 11111 334444321 35678888887642 1111 2 22334677
Q ss_pred EEEEccCCCEEEEeecCCCCCceEEEEeCCCCe-eEEE-ecccCCcceEEEEEeCCCCEEEE-Ee---CCCcEEEEECC
Q 001319 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT-IKRT-YAGFRKKSNGVVQFDTTQNHFLA-VG---EDSQIKFWDMD 615 (1101)
Q Consensus 543 ~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~-~~~~-~~~~~~~~v~~~~~~~~~~~l~~-~~---~dg~i~iwd~~ 615 (1101)
.+.+..+ ..+++... ++...|.++|+.++. .... +.......+......++++.++. .+ .-+.++.+|+.
T Consensus 354 ~~~~~~~-~l~~~~~~--~~~~~l~~~~~~~g~~~~~~~i~lp~~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 354 FISTTKD-RVFLATYD--NVVAKVVTFTLENEQWTKPVVLKLPYQNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EEEECSS-CEEEEEEE--TTEEEEEEECEETTEECCCEEECCCSTTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EEEEECC-EEEEEEEE--CCEEEEEEEECCCCceEEEeccCCCCCeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 8888876 34444432 345678889887775 2333 32222224555666677655444 33 44678888876
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=92.17 E-value=4.3 Score=41.78 Aligned_cols=223 Identities=11% Similarity=0.054 Sum_probs=113.5
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.|..++.... ..++.. +|+++.|-....-.+.........|..++... ...++. . ||.|+.|-....-.+..-.
T Consensus 25 ~i~~ia~G~~-h~~~l~-~G~v~~wG~n~~Gqlg~p~~~~~~i~~ia~G~--~hs~~l-~-~G~v~~wG~n~~Gqlg~P~ 98 (282)
T 3qhy_B 25 GVDAIAGGYF-HGLALK-GGKVLGWGANLNGQLTMPAATQSGVDAIAAGN--YHSLAL-K-DGEVIAWGGNEDGQTTVPA 98 (282)
T ss_dssp SCCEEEECSS-EEEEEE-TTEEEEEECCSSSTTSCCGGGGSCCCEEEECS--SEEEEE-E-TTEEEEEECCTTSTTCCCG
T ss_pred CCcEEEeCCC-eEEEEE-CCEEEEEeCCCCCCCCCCccCCCCEEEEEeCC--CEEEEE-E-CCEEEEeeCCCCCCCCCCc
Confidence 4566665433 233333 78888886543211111111123577777653 334444 5 9999999866432211111
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
.-...|..++...+. .+.-. ||.|..|-.....++... .. ....+..++...+... +.. |+.|..|-..
T Consensus 99 ~~~~~v~~ia~G~~h--s~al~-~G~v~~wG~n~~gqlg~~---~~---~~~~i~~i~~G~~~~~-~l~-~G~v~~wG~n 167 (282)
T 3qhy_B 99 EARSGVDAIAAGAWA--SYALK-DGKVIAWGDDSDGQTTVP---AE---AQSGVTALDGGVYTAL-AVK-NGGVIAWGDN 167 (282)
T ss_dssp GGSSSEEEEEEETTE--EEEEE-TTEEEEEECCTTSTTSCC---GG---GGSSEEEEEECSSEEE-EEE-TTEEEEEECC
T ss_pred ccCCCeEEEECcCCE--EEEEe-CCeEEEecCCCCCcCCCC---cc---CCCCeEEEEcccCEEE-EEE-CCEEEEecCC
Confidence 113468888776543 33334 999999987654332210 00 0134555544433322 223 7889888766
Q ss_pred CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecC
Q 001319 966 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPL 1045 (1101)
Q Consensus 966 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~ 1045 (1101)
....+..-... ...|..++...+.. ++. .||.|+.|-....-.+.. +... .. .+..++-..
T Consensus 168 ~~gqlg~p~~~---~~~v~~i~~G~~hs-~al--~~G~v~~wG~n~~gqlg~-------p~~~---~~--~v~~i~~G~- 228 (282)
T 3qhy_B 168 YFGQTTVPAEA---QSGVDDVAGGIFHS-LAL--KDGKVIAWGDNRYKQTTV-------PTEA---LS--GVSAIASGE- 228 (282)
T ss_dssp TTSTTSCCGGG---GSSEEEEEECSSEE-EEE--ETTEEEEEECCTTSTTCC-------CGGG---GS--SCCEEEECS-
T ss_pred CCCCCCCceec---CCCeEEEEecCCEE-EEE--ECCeEEEEECCCCCCCCC-------Cccc---CC--CceEEEcCC-
Confidence 43332211111 45688887654333 333 599999997655322211 1010 11 123444322
Q ss_pred CCCEEEEEECCCeEEEEeCCCC
Q 001319 1046 EPNQFAIGLTDGSVKVMEPSES 1067 (1101)
Q Consensus 1046 d~~~l~s~~~Dg~v~iWd~~~~ 1067 (1101)
...++.. ||.|..|-....
T Consensus 229 -~h~~al~--~g~v~~wG~n~~ 247 (282)
T 3qhy_B 229 -WYSLALK--NGKVIAWGSSRT 247 (282)
T ss_dssp -SCEEEEE--TTEEEEESTTCC
T ss_pred -CEEEEEE--CCEEEEecCCCC
Confidence 3344444 999999986543
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=91.92 E-value=7.1 Score=46.33 Aligned_cols=200 Identities=6% Similarity=-0.027 Sum_probs=100.4
Q ss_pred cCCCEEEEEECC----CeEEEEeecCCcccccceeee---cccCc-EEEEEEec-CCCceEEEEecCCc------eEEEE
Q 001319 416 PDGNYVGVAFTK----HLIQLYSYAGSNDLRQHSQID---AHVGA-VNDLAFAY-PNKLLCVVTCGDDK------LIKVW 480 (1101)
Q Consensus 416 pdg~~las~~~d----~~i~vwd~~~~~~~~~~~~l~---~h~~~-V~~l~~s~-d~~~~~l~s~~~d~------~v~iw 480 (1101)
-++..++.|+.+ ..+.+||..+++-......+. ..... -.+++..+ +++ +++.||.++ .+.+|
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~--lyv~GG~~~~~~~~~dv~~y 473 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQ--LLLIGGRKAPHQGLSDNWIF 473 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTE--EEEECCBSSTTCBCCCCEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCE--EEEEcCCCCCCCccccEEEE
Confidence 567777777753 458899988764222100000 01111 12233333 565 666666432 57788
Q ss_pred E-cCCcee--EEeecCCcCeEEEecccCCCccEEEEeccCC--eEEEEecCCCCeeeec-----cCCCCceEEEEEccC-
Q 001319 481 E-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIFSTAIDG--KIKAWLYDTMGSRVDY-----DAPGHWCTTMLYSAD- 549 (1101)
Q Consensus 481 d-~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~--~i~~wd~~~~~~~~~~-----~~~~~~v~~~~~s~d- 549 (1101)
| .+..-. ..+......-.++.+. ++.+++.|+.++ .+.+||..+..=...- ........++.+..+
T Consensus 474 d~~t~~W~~~~~~p~~R~~h~~~~~~---~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~ 550 (695)
T 2zwa_A 474 DMKTREWSMIKSLSHTRFRHSACSLP---DGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVS 550 (695)
T ss_dssp ETTTTEEEECCCCSBCCBSCEEEECT---TSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTT
T ss_pred eCCCCcEEECCCCCCCcccceEEEEc---CCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCC
Confidence 8 443221 1111111112222221 456778887655 6888887664322111 111122234555555
Q ss_pred CCEEEEeecCCCC---CceEEEEeCCCCe------eEEEecc-cCCcceEEEEEeCCCCEEEEEeC--------CCcEEE
Q 001319 550 GSRLFSCGTSKDG---DSFLVEWNESEGT------IKRTYAG-FRKKSNGVVQFDTTQNHFLAVGE--------DSQIKF 611 (1101)
Q Consensus 550 ~~~l~~~~~~~~~---~~~i~iwd~~~~~------~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~--------dg~i~i 611 (1101)
++.++.|+...++ ...+.+||+.+.. ....... .....-..++...++..++.||. ...+.+
T Consensus 551 ~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~ 630 (695)
T 2zwa_A 551 KQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYITPRKLLIVGGTSPSGLFDRTNSIIS 630 (695)
T ss_dssp TEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEEETTEEEEECCBCSSCCCCTTTSEEE
T ss_pred CEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEeCCCEEEEECCccCCCCCCCCCeEEE
Confidence 6677777653322 3568899998876 2222111 11111222333333666677763 346999
Q ss_pred EECCCCeee
Q 001319 612 WDMDNVNIL 620 (1101)
Q Consensus 612 wd~~~~~~~ 620 (1101)
||..+.+..
T Consensus 631 yd~~t~~W~ 639 (695)
T 2zwa_A 631 LDPLSETLT 639 (695)
T ss_dssp EETTTTEEE
T ss_pred EECCCCeEE
Confidence 999887665
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=91.49 E-value=7.4 Score=40.00 Aligned_cols=183 Identities=11% Similarity=0.051 Sum_probs=96.4
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.|..++...+-. ++. .+|.|+.|-....-.+.....-...|..++... ...+.-. ||.|+.|-....-.+....
T Consensus 64 ~i~~ia~G~~hs-~~l-~~G~v~~wG~n~~Gqlg~P~~~~~~v~~ia~G~---~hs~al~-~G~v~~wG~n~~gqlg~~~ 137 (282)
T 3qhy_B 64 GVDAIAAGNYHS-LAL-KDGEVIAWGGNEDGQTTVPAEARSGVDAIAAGA---WASYALK-DGKVIAWGDDSDGQTTVPA 137 (282)
T ss_dssp CCCEEEECSSEE-EEE-ETTEEEEEECCTTSTTCCCGGGSSSEEEEEEET---TEEEEEE-TTEEEEEECCTTSTTSCCG
T ss_pred CEEEEEeCCCEE-EEE-ECCEEEEeeCCCCCCCCCCcccCCCeEEEECcC---CEEEEEe-CCeEEEecCCCCCcCCCCc
Confidence 456666544333 333 378888886543211111111123577777754 3444455 9999999876432221111
Q ss_pred cCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcC
Q 001319 886 GHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDAS 965 (1101)
Q Consensus 886 ~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~ 965 (1101)
.....|..++...+. .++ -. ||.|..|-.....++.. .... ...+..++....... +. .++.|..|-..
T Consensus 138 ~~~~~i~~i~~G~~~-~~~-l~-~G~v~~wG~n~~gqlg~---p~~~---~~~v~~i~~G~~hs~-al-~~G~v~~wG~n 206 (282)
T 3qhy_B 138 EAQSGVTALDGGVYT-ALA-VK-NGGVIAWGDNYFGQTTV---PAEA---QSGVDDVAGGIFHSL-AL-KDGKVIAWGDN 206 (282)
T ss_dssp GGGSSEEEEEECSSE-EEE-EE-TTEEEEEECCTTSTTSC---CGGG---GSSEEEEEECSSEEE-EE-ETTEEEEEECC
T ss_pred cCCCCeEEEEcccCE-EEE-EE-CCEEEEecCCCCCCCCC---ceec---CCCeEEEEecCCEEE-EE-ECCeEEEEECC
Confidence 233567777775443 233 33 79999998765433321 0000 134555555544443 34 78999999765
Q ss_pred CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 966 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 966 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
....+..-... ...|..|+...+.. ++.. ||.|+.|-...
T Consensus 207 ~~gqlg~p~~~---~~~v~~i~~G~~h~-~al~--~g~v~~wG~n~ 246 (282)
T 3qhy_B 207 RYKQTTVPTEA---LSGVSAIASGEWYS-LALK--NGKVIAWGSSR 246 (282)
T ss_dssp TTSTTCCCGGG---GSSCCEEEECSSCE-EEEE--TTEEEEESTTC
T ss_pred CCCCCCCCccc---CCCceEEEcCCCEE-EEEE--CCEEEEecCCC
Confidence 43322211111 34577777554333 3333 99999997654
|
| >2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A | Back alignment and structure |
|---|
Probab=88.33 E-value=35 Score=37.80 Aligned_cols=105 Identities=14% Similarity=0.090 Sum_probs=61.1
Q ss_pred CEeEEEecCCCC--eEEEEcCCeEEEEECCCce---EEEEeeC---------CCCCeeEEEEecC---CCCEEEEEeCC-
Q 001319 806 AVPCIALSKNDS--YVMSATGGKISLFNMMTFK---VMTTFMS---------PPPASTFLAFHPQ---DNNIIAIGTED- 867 (1101)
Q Consensus 806 ~v~~~~~s~dg~--~la~~~dg~i~vwd~~~~~---~~~~~~~---------~~~~i~~l~~s~~---~~~~la~g~~d- 867 (1101)
..+.|+|.|||. ++++-..|.|++++..... .+..+.. .......|+|+|+ ++.+.++-+.+
T Consensus 15 ~P~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~ 94 (463)
T 2wg3_C 15 QPVGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQ 94 (463)
T ss_dssp SEEEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECC
T ss_pred CceEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCC
Confidence 457899999996 7777678999999754221 2222211 1345788999982 24444443321
Q ss_pred -----------CcEEEEEeec----------ceEEEeec--cCCCCeeEEEEcCCCCEEEEEeCCC
Q 001319 868 -----------STIHIYNVRV----------DEVKSKLK--GHQKRITGLAFSTSLNILVSSGADA 910 (1101)
Q Consensus 868 -----------g~v~iwd~~~----------~~~~~~~~--~h~~~V~~l~~s~d~~~l~s~s~Dg 910 (1101)
..|.-|.+.. .+.+..+. ........|+|.|||.+.++.+..+
T Consensus 95 ~~~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~ 160 (463)
T 2wg3_C 95 ERWAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM 160 (463)
T ss_dssp CSSCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred CCcccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence 1344455432 12333322 1122367899999999888776543
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=88.16 E-value=32 Score=37.17 Aligned_cols=208 Identities=8% Similarity=-0.007 Sum_probs=102.8
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEeecc-e----------EEEeecc-CCCCeeEEEEcCCCCEEEEEeCCCcEEEE
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-E----------VKSKLKG-HQKRITGLAFSTSLNILVSSGADAQLCVW 915 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-~----------~~~~~~~-h~~~V~~l~~s~d~~~l~s~s~Dg~v~lw 915 (1101)
+..++. +....+.-..||.|+.|-.... + ....+.. ....+..++++......+....||.|..|
T Consensus 55 i~~i~~---G~~~~~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~~~~v~i~~G~~h~~al~~~G~v~~w 131 (389)
T 3kci_A 55 PVQLIG---GEQTLFAVTADGKLYATGYGAGGRLGIGGTESVSTPTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSW 131 (389)
T ss_dssp EEEEEE---ETTEEEEEETTSCEEEEECCGGGTTSSSSSCCEEEEEECGGGTTSCEEEEEECTTCSEEEEEETTSCEEEE
T ss_pred eEEEEe---CCCeEEEEcCCCcEEEEECCCCCCCCCCCcCCccCCEEcccccCCceeEEEECcCCCeEEEEcCCCCEEEE
Confidence 444444 4456666778999999975431 1 1111221 22345556777666777777889999999
Q ss_pred ECCCCcccc-------ceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCce-----------eeeEeccCC
Q 001319 916 SIDTWEKRK-------SVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKME-----------RIRQWTPQD 977 (1101)
Q Consensus 916 d~~~~~~~~-------~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~-----------~~~~~~~~~ 977 (1101)
-.....++. ..+... ..-....+..++.. ....++...++.|..|-....- ....+....
T Consensus 132 G~n~~GqLG~g~~~~~~~p~~v-~~l~~~~i~~va~G-~~hs~alt~~G~v~~wG~n~~GqLG~~~~~~~~~p~~v~~~~ 209 (389)
T 3kci_A 132 GEAEDGKLGHGNRSPCDRPRVI-ESLRGIEVVDVAAG-GAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLVEALQ 209 (389)
T ss_dssp ECCGGGTTCSSSCCCEEEEEEC-GGGTTSCEEEEEEC-SSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGT
T ss_pred eCCCCCcCCCCCCccCcCCeEe-cccCCCeEEEEEeC-cCeEEEEeCCCeEEEeCCCCCCCcCCCCCcccccceEecccC
Confidence 765422110 111111 10000133333332 2233444668889999654311 111111111
Q ss_pred CCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCC
Q 001319 978 ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDG 1057 (1101)
Q Consensus 978 ~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg 1057 (1101)
...|..++......+.+.-..||.|+.|-....-.+..-.......+..+..-....+..++.- ....+.-..||
T Consensus 210 --~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~~~~~v~~v~~G---~~hs~alt~~G 284 (389)
T 3kci_A 210 --GHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECG---SQFSVALTKSG 284 (389)
T ss_dssp --TSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGGTTSCEEEEEEE---TTEEEEEETTS
T ss_pred --CCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEecccCCCcEEEEeCC---CCEEEEEeCCC
Confidence 4567777765544566677789999999754321110000000000000000111123444432 34555567899
Q ss_pred eEEEEeCC
Q 001319 1058 SVKVMEPS 1065 (1101)
Q Consensus 1058 ~v~iWd~~ 1065 (1101)
.|..|-.-
T Consensus 285 ~v~~wG~n 292 (389)
T 3kci_A 285 AVYTWGKG 292 (389)
T ss_dssp CEEEEECC
T ss_pred eEEEEeCC
Confidence 99999753
|
| >4hvt_A Ritya.17583.B, post-proline cleaving enzyme; ssgcid, structural genomics, S structural genomics center for infectious disease; 1.70A {Rickettsia typhi} | Back alignment and structure |
|---|
Probab=87.39 E-value=22 Score=42.04 Aligned_cols=244 Identities=8% Similarity=0.010 Sum_probs=116.6
Q ss_pred EEEE-EccCCCEEEEEEC-----CCeEEEEeecCCcccccceeeeccc-----CcEEEEEEecCCCceEEEEe-------
Q 001319 410 SRVA-WSPDGNYVGVAFT-----KHLIQLYSYAGSNDLRQHSQIDAHV-----GAVNDLAFAYPNKLLCVVTC------- 471 (1101)
Q Consensus 410 ~~~~-~spdg~~las~~~-----d~~i~vwd~~~~~~~~~~~~l~~h~-----~~V~~l~~s~d~~~~~l~s~------- 471 (1101)
..+. ++||+++++.+-+ -..|+++|+.+++.+.....-.... .....++|..++. ++++.
T Consensus 132 ~g~~~~~~~~~~~~~~ls~~G~d~~~~~~~d~~t~~~~~~~~~~~~k~~~~~~~~~~~~~W~d~~~--~~~~~~~~~~~~ 209 (711)
T 4hvt_A 132 RGVSNCFQNPNRYLISMSFGGKDEMFFREWDLEKKDFVKNGFEPITNSGKLLEGKFTYPTWINKDT--IIFNLVLHKNEI 209 (711)
T ss_dssp EEEEECSSSTTEEEEEEEETTCSEEEEEEEETTTTEECTTCSCCBCTTCCBCCEETCCEEEEETTE--EEECCCCSTTCB
T ss_pred eceeecCCCCCEEEEEeCCCCCceeEEEEEECCcCCcCCCCcccccccccccccccceeeEECCCE--EEEEeCCCCCCc
Confidence 3444 8899998887522 2369999999987654211100000 0123458874444 44432
Q ss_pred ---cCCceEEEEE-cCC--ceeEEeecCCcCe-EEEecccCCCcc---EEEEeccC---CeEEEEecCCCC-eeeeccCC
Q 001319 472 ---GDDKLIKVWE-LSG--RKLFNFEGHEAPV-YSICPHHKENIQ---FIFSTAID---GKIKAWLYDTMG-SRVDYDAP 537 (1101)
Q Consensus 472 ---~~d~~v~iwd-~~~--~~~~~~~~h~~~v-~~v~~~~~~~~~---~l~s~~~d---~~i~~wd~~~~~-~~~~~~~~ 537 (1101)
+....|+.|. -+. +-...+.+....+ .....+.++... .+++.+.+ ..+.+.+.+... ....+..+
T Consensus 210 ~~~~~~~~v~~~~~Gt~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 289 (711)
T 4hvt_A 210 TSSLYPNSLYIWKRGESIEKAKKLFEVPKEYIYVSAGKLLSDTISSSLIFISANKDFYNYDNYILDTKYKNLKLQKINMP 289 (711)
T ss_dssp CTTSSBCEEEEEETTSCGGGCEEEEECCTTSCEEEEEESSCTTTCSSEEEEEEESSSSCEEEEEEECSSSSCEEEECCSC
T ss_pred CcCCCCCEEEEEECCCChHHCeEEeccCCCceEEEEEEecCCCceEEEEEEEEecccCceeEEEEcCCCCCCcceEeecC
Confidence 1224678887 222 1223344433333 223333333222 34443322 345555554322 22333333
Q ss_pred CCceEEEEEccCCCEEEEeecCC------CCCceEEEEeCCCCe-------eEE-EecccCCcceEEEEEeCCCCEEEEE
Q 001319 538 GHWCTTMLYSADGSRLFSCGTSK------DGDSFLVEWNESEGT-------IKR-TYAGFRKKSNGVVQFDTTQNHFLAV 603 (1101)
Q Consensus 538 ~~~v~~~~~s~d~~~l~~~~~~~------~~~~~i~iwd~~~~~-------~~~-~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1101)
... .+..+.++.+++....+. -..+.|...|+.++. ..+ .+.......+..+.+..+ ..+++.
T Consensus 290 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~l~~~~ 366 (711)
T 4hvt_A 290 SDA--TLQGSFKEYVFWLLRSDWKFKSHNIKAGSLVALHFTDLLKTESDKTSLKILFTPTANEVFNFISTTKD-RVFLAT 366 (711)
T ss_dssp TTC--EEEEEETTEEEEECSSCEEETTEEECTTCEEEEEGGGGGSCGGGCTTCEEEECCCTTEEEEEEEECSS-CEEEEE
T ss_pred Ccc--eEeeeECCEEEEEECcccccccccCCCCeEEEEECCcccccccccccceEEECCCCCCeEEEEEEECC-EEEEEE
Confidence 321 223445665555432210 135678888877642 122 244434445667777765 455566
Q ss_pred eCCC--cEEEEECCCCe-eeEe-eccCCCCCCCCeeEEecCCCEEE-EEEc---CCcEEEEEcc
Q 001319 604 GEDS--QIKFWDMDNVN-ILTS-TDAEGGLPNLPRLRFSKEGNLLA-VTTA---DNGFKILANA 659 (1101)
Q Consensus 604 ~~dg--~i~iwd~~~~~-~~~~-~~~~~~~~~v~~v~~s~~g~~l~-~~~~---d~~i~iwd~~ 659 (1101)
..++ .++++++.+++ .... +.... ...+.....++++..++ +.+. -+.+..+|..
T Consensus 367 ~~~~~~~l~~~~~~~g~~~~~~~i~lp~-~~~~~~~~~~~~~~~~~~~~ss~~~P~~~~~~d~~ 429 (711)
T 4hvt_A 367 YDNVVAKVVTFTLENEQWTKPVVLKLPY-QNAIFGMSSYEEEEEALITIENSIVPPTIYLWVKT 429 (711)
T ss_dssp EETTEEEEEEECEETTEECCCEEECCCS-TTCEEEEECCTTCSCEEEEEECSSSCCEEEEECTT
T ss_pred EECCEEEEEEEECCCCceEEEeccCCCC-CeEEEEEeecCcCCEEEEEEecCCCCCEEEEEeCC
Confidence 6665 46777776664 2233 33322 12344455556655443 3332 2456566554
|
| >3kci_A Probable E3 ubiquitin-protein ligase HERC2; WD40, RCC1, structural genomics consortium, SGC, coiled coil, metal-binding, phosphoprotein; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.80 E-value=42 Score=36.17 Aligned_cols=210 Identities=9% Similarity=0.056 Sum_probs=105.9
Q ss_pred CeeEEEEecCCCCEEEEEeCCCcEEEEEeecc-----------eEEEeeccC-CCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001319 847 ASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-----------EVKSKLKGH-QKRITGLAFSTSLNILVSSGADAQLCV 914 (1101)
Q Consensus 847 ~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~-----------~~~~~~~~h-~~~V~~l~~s~d~~~l~s~s~Dg~v~l 914 (1101)
.+..++++. +....+.-..||.|+.|-.... .....+..- ...|..++.. ....+....||.|..
T Consensus 106 ~~~~v~i~~-G~~h~~al~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~l~~~~i~~va~G--~~hs~alt~~G~v~~ 182 (389)
T 3kci_A 106 FIKKVAVNS-GGKHCLALSSEGEVYSWGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAG--GAHSACVTAAGDLYT 182 (389)
T ss_dssp CEEEEEECT-TCSEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEEC--SSEEEEEETTSCEEE
T ss_pred ceeEEEECc-CCCeEEEEcCCCCEEEEeCCCCCcCCCCCCccCcCCeEecccCCCeEEEEEeC--cCeEEEEeCCCeEEE
Confidence 456677777 6677777788999999965431 111122211 2256666664 345556678999999
Q ss_pred EECCCCccc------cceEEeecCCCCCCCcceEEEcC-CCCEEEEEeCCeEEEEEcCCcee-----------eeEeccC
Q 001319 915 WSIDTWEKR------KSVTIHIPAGKTPTGDTRVQFNA-DQVRMLVVHETQLAIYDASKMER-----------IRQWTPQ 976 (1101)
Q Consensus 915 wd~~~~~~~------~~~~~~~~~~~~~~~v~~~~~s~-d~~~l~~~~d~~i~v~d~~~~~~-----------~~~~~~~ 976 (1101)
|-....-++ ...............+..++... +...++...++.|..|-...... ...+...
T Consensus 183 wG~n~~GqLG~~~~~~~~~p~~v~~~~~~~v~~ia~G~g~~~t~~l~~~G~v~~wG~n~~GqLG~g~~~~~~~p~~v~~~ 262 (389)
T 3kci_A 183 WGKGRYGRLGHSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTDDDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSL 262 (389)
T ss_dssp EECCGGGTTCSSSCCCEEEEEECGGGTTSCEEEEEECCSSCEEEEEETTTEEEEEECCGGGTTSSSSCCCEEEEEECGGG
T ss_pred eCCCCCCCcCCCCCcccccceEecccCCCeEEEEEEcCCCcEEEEEccCCEEEEEeCCCCCCCCCCCCCCccccEEeccc
Confidence 976542211 11111111111113455555544 34455557789999996543211 1111111
Q ss_pred CCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECC
Q 001319 977 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTD 1056 (1101)
Q Consensus 977 ~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~D 1056 (1101)
. ...|..|+.. ..+.+.-..||.|+.|-....-.+..-.......+..+..-....++.++- .....+....|
T Consensus 263 ~--~~~v~~v~~G--~~hs~alt~~G~v~~wG~n~~GqLG~g~~~~~~~P~~v~~l~~~~v~~ia~---G~~h~~al~~~ 335 (389)
T 3kci_A 263 T--GLGVVKVECG--SQFSVALTKSGAVYTWGKGDYHRLGHGSDDHVRRPRQVQGLQGKKVIAIAT---GSLHCVCCTED 335 (389)
T ss_dssp T--TSCEEEEEEE--TTEEEEEETTSCEEEEECCGGGTTCSSSCCCEEEEEECGGGTTCCEEEEEE---CSSEEEEEETT
T ss_pred C--CCcEEEEeCC--CCEEEEEeCCCeEEEEeCCCCCCCCCCCCccccCCeEeccCCCCCEEEEEe---ccCeEEEECCC
Confidence 1 3346666654 345555578999999976432111000000000000000011112334443 34455666889
Q ss_pred CeEEEEeCCC
Q 001319 1057 GSVKVMEPSE 1066 (1101)
Q Consensus 1057 g~v~iWd~~~ 1066 (1101)
|.|..|-...
T Consensus 336 G~v~~wG~n~ 345 (389)
T 3kci_A 336 GEVYTWGDND 345 (389)
T ss_dssp CCEEEEECCT
T ss_pred CCEEEeeCCC
Confidence 9999998654
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=85.28 E-value=43 Score=35.74 Aligned_cols=196 Identities=11% Similarity=0.148 Sum_probs=102.7
Q ss_pred CcEEEEEEecCCceEEE-EEec-------------cCcEEEEecCCC--ceeccccceeecccccCccccccccccCCcc
Q 001319 345 STVISMDFHPSHQTLLL-VGSS-------------NGEITLWELAMR--DRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408 (1101)
Q Consensus 345 ~~V~~v~fspdg~~lla-sg~~-------------d~~i~iwd~~~~--~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~ 408 (1101)
-.|..+...++|+..++ +|-. --.|.+||+.++ +.++...+ +..... ....
T Consensus 87 vsV~~v~iD~~~rLWVLDtG~~~~~~~~~~~~~~~~pkLv~~DL~t~~~~li~~y~~------------p~~~~~-~~S~ 153 (381)
T 3q6k_A 87 TSIYQPVIDDCRRLWVVDIGSVEYRSRGAKDYPSHRPAIVAYDLKQPNYPEVVRYYF------------PTRLVE-KPTY 153 (381)
T ss_dssp SCEEEEEECTTCEEEEEECSSCSSCSTTGGGSCCCCCEEEEEESSSTTCCEEEEEEC------------CGGGCC-CGGG
T ss_pred EEeeEEEEcCCCcEEEEeCCCcCcCCCccccCCCCCceEEEEECCCCCceeEEEEEC------------CHHhcc-cCCc
Confidence 36777888887763322 2211 125889999998 77764222 212222 2457
Q ss_pred EEEEEEc---cC----CCEEEEEE-CCCeEEEEeecCCcccccce-----------eeecc----cCcEEEEEEecC---
Q 001319 409 VSRVAWS---PD----GNYVGVAF-TKHLIQLYSYAGSNDLRQHS-----------QIDAH----VGAVNDLAFAYP--- 462 (1101)
Q Consensus 409 v~~~~~s---pd----g~~las~~-~d~~i~vwd~~~~~~~~~~~-----------~l~~h----~~~V~~l~~s~d--- 462 (1101)
+..+++. |+ +.++..+. ..+-|.|+|+.+++..+... ...|. ...|..|+.+|+
T Consensus 154 l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~~~pd~~~~~~i~G~~~~~~~Gi~gIaLsp~~~~ 233 (381)
T 3q6k_A 154 FGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPTFKAERPTKFDYGGKEYEFKAGIFGITLGDRDSE 233 (381)
T ss_dssp EEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGGGSCCSCEEEEETTEEEEECCCEEEEEECCCCTT
T ss_pred cceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCCCccccCcceEECCEEeEeccCceEEEecCCcCC
Confidence 8888887 32 33444443 35679999999987654321 00111 236788888887
Q ss_pred -CCceEEEEecCCceEEEEE---c-CC---ceeEEeecCCc---CeEEEecccCCCccEEEEeccCCeEEEEecCC-C--
Q 001319 463 -NKLLCVVTCGDDKLIKVWE---L-SG---RKLFNFEGHEA---PVYSICPHHKENIQFIFSTAIDGKIKAWLYDT-M-- 528 (1101)
Q Consensus 463 -~~~~~l~s~~~d~~v~iwd---~-~~---~~~~~~~~h~~---~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~-~-- 528 (1101)
++.+++-..+.. .+.--. . +. ..+..+ |..+ .-..+++. +.+|.++++--....|..|+... .
T Consensus 234 ~~~~LYf~plss~-~ly~V~T~~L~~~~~~~~v~~~-G~kg~~s~~~~~~~D-~~~G~ly~~~~~~~aI~~w~~~~~~~~ 310 (381)
T 3q6k_A 234 GNRPAYYLAGSAI-KVYSVNTKELKQKGGKLNPELL-GNRGKYNDAIALAYD-PKTKVIFFAEANTKQVSCWNTQKMPLR 310 (381)
T ss_dssp SCCEEEEEESSCS-EEEEEEHHHHSSTTCCCCCEEE-EECCTTCCEEEEEEC-TTTCEEEEEESSSSEEEEEETTSCSBC
T ss_pred CCeEEEEEECCCC-cEEEEEHHHhhCcchhhceEEe-eecCCCCCcceEEEe-CCCCeEEEEeccCCeEEEEeCCCCccc
Confidence 564333333322 222111 1 11 111111 2222 22233332 13567777777888999998765 1
Q ss_pred --C-eeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 529 --G-SRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 529 --~-~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
. ........-..+..+.+..+|.+.+..
T Consensus 311 ~~n~~~l~~d~~l~~pd~~~i~~~g~Lwv~s 341 (381)
T 3q6k_A 311 MKNTDVVYTSSRFVFGTDISVDSKGGLWFMS 341 (381)
T ss_dssp GGGEEEEEECTTCCSEEEEEECTTSCEEEEE
T ss_pred cCceEEEEECCCccccCeEEECCCCeEEEEE
Confidence 1 111222223356777777666544443
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=83.67 E-value=18 Score=42.77 Aligned_cols=113 Identities=9% Similarity=-0.061 Sum_probs=63.2
Q ss_pred CCCEEEEeecCCCC--CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCC--cEEEEECCCCeeeEeec
Q 001319 549 DGSRLFSCGTSKDG--DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDS--QIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 549 d~~~l~~~~~~~~~--~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg--~i~iwd~~~~~~~~~~~ 624 (1101)
+++.++.||..... -..+.+||..+.+....-.......-.+++...++..++.||.++ .+.+||..+......-.
T Consensus 451 ~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~ 530 (695)
T 2zwa_A 451 NNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTP 530 (695)
T ss_dssp TTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCC
T ss_pred CCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccC
Confidence 77777787764322 246889999886544432222111222233324777888887544 79999998876544322
Q ss_pred ---cCCCCCCCCeeEEecC-CCEEEEEEc--C-----CcEEEEEcccc
Q 001319 625 ---AEGGLPNLPRLRFSKE-GNLLAVTTA--D-----NGFKILANAIG 661 (1101)
Q Consensus 625 ---~~~~~~~v~~v~~s~~-g~~l~~~~~--d-----~~i~iwd~~~~ 661 (1101)
.........++.+..+ +++++.|+. + ..+.+||+.+.
T Consensus 531 ~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~ 578 (695)
T 2zwa_A 531 KDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAE 578 (695)
T ss_dssp SSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTT
T ss_pred CCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCC
Confidence 1111111233555555 666677665 2 34777777655
|
| >3q6k_A 43.2 kDa salivary protein; beta propeller, binding protein, serotonin, salivary gland, binding, ligand binging protein; HET: CIT SRO; 2.52A {Lutzomyia longipalpis} PDB: 3q6p_A* 3q6t_A* | Back alignment and structure |
|---|
Probab=81.11 E-value=62 Score=34.50 Aligned_cols=155 Identities=9% Similarity=0.134 Sum_probs=87.1
Q ss_pred eEEEEECCCc--eEEEEeeCC------CCCeeEEEEe---cC--C-CCEEEEEe-CCCcEEEEEeecceEEEeeccCCCC
Q 001319 826 KISLFNMMTF--KVMTTFMSP------PPASTFLAFH---PQ--D-NNIIAIGT-EDSTIHIYNVRVDEVKSKLKGHQKR 890 (1101)
Q Consensus 826 ~i~vwd~~~~--~~~~~~~~~------~~~i~~l~~s---~~--~-~~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~~ 890 (1101)
+|.+||+.+. +.++++.-. ...+..+++. +. + +.++..+. ..+.|.|+|+.+++.-+.+..+
T Consensus 124 kLv~~DL~t~~~~li~~y~~p~~~~~~~S~l~di~VD~~~~~~~c~~~~aYItD~~~~gLIVydl~~~~swRv~~~~--- 200 (381)
T 3q6k_A 124 AIVAYDLKQPNYPEVVRYYFPTRLVEKPTYFGGFAVDVANPKGDCSETFVYITNFLRGALFIYDHKKQDSWNVTHPT--- 200 (381)
T ss_dssp EEEEEESSSTTCCEEEEEECCGGGCCCGGGEEEEEEEESCTTTTSCSEEEEEEETTTTEEEEEETTTTEEEEEECGG---
T ss_pred eEEEEECCCCCceeEEEEECCHHhcccCCccceEEEecccCCCCCCccEEEEEcCCCCcEEEEECCCCcEEEEccCC---
Confidence 5778888888 777776532 2346777777 21 1 33444443 4678999999999877665311
Q ss_pred eeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC----CCEEEEEeCCeEEEEEcCC
Q 001319 891 ITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD----QVRMLVVHETQLAIYDASK 966 (1101)
Q Consensus 891 V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d----~~~l~~~~d~~i~v~d~~~ 966 (1101)
|.|+.....+ .+|.-.-|. ..+..++++|+ ++.|....=..-++|.+.+
T Consensus 201 -----~~pd~~~~~~--i~G~~~~~~--------------------~Gi~gIaLsp~~~~~~~~LYf~plss~~ly~V~T 253 (381)
T 3q6k_A 201 -----FKAERPTKFD--YGGKEYEFK--------------------AGIFGITLGDRDSEGNRPAYYLAGSAIKVYSVNT 253 (381)
T ss_dssp -----GSCCSCEEEE--ETTEEEEEC--------------------CCEEEEEECCCCTTSCCEEEEEESSCSEEEEEEH
T ss_pred -----CccccCcceE--ECCEEeEec--------------------cCceEEEecCCcCCCCeEEEEEECCCCcEEEEEH
Confidence 3444111111 122211110 46778888887 6777765433334443321
Q ss_pred --------ceeeeEeccCCCCCCCEEEEEEc-cCCCEEEEEeCCCcEEEEeCCC
Q 001319 967 --------MERIRQWTPQDALSAPISCAVYS-CNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 967 --------~~~~~~~~~~~~h~~~v~~v~~s-~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
...+..+-. .+-...-..+++. .+|.+.++--+...|..|+..+
T Consensus 254 ~~L~~~~~~~~v~~~G~-kg~~s~~~~~~~D~~~G~ly~~~~~~~aI~~w~~~~ 306 (381)
T 3q6k_A 254 KELKQKGGKLNPELLGN-RGKYNDAIALAYDPKTKVIFFAEANTKQVSCWNTQK 306 (381)
T ss_dssp HHHSSTTCCCCCEEEEE-CCTTCCEEEEEECTTTCEEEEEESSSSEEEEEETTS
T ss_pred HHhhCcchhhceEEeee-cCCCCCcceEEEeCCCCeEEEEeccCCeEEEEeCCC
Confidence 111111111 1102344566775 6787777777888999999876
|
| >3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha} | Back alignment and structure |
|---|
Probab=80.26 E-value=68 Score=34.50 Aligned_cols=216 Identities=7% Similarity=0.015 Sum_probs=100.2
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCC--cEEEEEee-cce---EEEe---ecc--------CCCCeeEEEEcCC--CCEEEE
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDS--TIHIYNVR-VDE---VKSK---LKG--------HQKRITGLAFSTS--LNILVS 905 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg--~v~iwd~~-~~~---~~~~---~~~--------h~~~V~~l~~s~d--~~~l~s 905 (1101)
...|.+|++.|.+...|.++...| .-.||... .++ .+.. +.. +...|.++++.|. ...|..
T Consensus 54 ~~~v~~i~~dp~~~~~l~~g~~~g~~g~gl~~s~D~G~tW~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~ 133 (394)
T 3b7f_A 54 GHTIHHIVQDPREPERMLMAARTGHLGPTVFRSDDGGGNWTEATRPPAFNKAPEGETGRVVDHVFWLTPGHASEPGTWYA 133 (394)
T ss_dssp TSEEEEEEECSSSTTCEEEEEEC--CCEEEEEESSTTSCCEECSBCCCCCCCC----CCCCCEEEEEEECCTTSTTCEEE
T ss_pred CCceEEEEECCCCCCeEEEEecCCCCCccEEEeCCCCCCceECCccccCCCcccccccccccceeEEEeCCCCCCCEEEE
Confidence 456999999984444455555554 11233332 222 2211 111 1125788999862 445555
Q ss_pred EeCCCcEEEEECCCCccccceEEeec---C------------CCCCCCcceEEEcCC--CCEEEEEeCCeEEEEEcCCce
Q 001319 906 SGADAQLCVWSIDTWEKRKSVTIHIP---A------------GKTPTGDTRVQFNAD--QVRMLVVHETQLAIYDASKME 968 (1101)
Q Consensus 906 ~s~Dg~v~lwd~~~~~~~~~~~~~~~---~------------~~~~~~v~~~~~s~d--~~~l~~~~d~~i~v~d~~~~~ 968 (1101)
++..+.|...+-....- ..+... . ......+..+.++|. +...+...++.|...+ +.++
T Consensus 134 g~~~ggl~~S~DgG~tW---~~~~~~~~~p~~~~~~~~~~~g~~~~~~i~~i~~d~~~~~~l~vg~~~ggl~~s~-DgG~ 209 (394)
T 3b7f_A 134 GTSPQGLFRSTDHGASW---EPVAGFNDHPMRRAWTGGEQDGTPDGPKMHSILVDPRDPKHLYIGMSSGGVFEST-DAGT 209 (394)
T ss_dssp EEETTEEEEESSTTSBC---EECHHHHTCTTHHHHHCCC----CCCCEEEEEEECTTCTTCEEEEEETBEEEEES-STTS
T ss_pred EecCCcEEEEcCCCCCe---EECcCccCCccccccccccccCCCCCCceeEEEECCCCCCEEEEEECCCCEEEEC-CCCC
Confidence 55555454443221111 111100 0 011135678889873 3444444455544332 2333
Q ss_pred eeeEeccC-CC-C--------CCCEEEEEEccC-CCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccce
Q 001319 969 RIRQWTPQ-DA-L--------SAPISCAVYSCN-SQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYP 1037 (1101)
Q Consensus 969 ~~~~~~~~-~~-h--------~~~v~~v~~s~d-g~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 1037 (1101)
.-..+... .. + ...+.++++.|+ ...|..+...+ |...+ +.++....+.. ..+ .......
T Consensus 210 tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~l~vg~~~g-l~~s~-D~G~tW~~~~~--~l~-----~~~~~~~ 280 (394)
T 3b7f_A 210 DWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDILYQQNHCG-IYRMD-RREGVWKRIGD--AMP-----REVGDIG 280 (394)
T ss_dssp SCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTEEEEEETTE-EEEEE-TTTTEEECGGG--GSC-----TTTCSCE
T ss_pred CceECCCCccccccCCCccccCcceeEEEECCCCCCEEEEEcCCe-EEEeC-CCCCcceECCC--CCC-----CCCccce
Confidence 32222210 00 0 135899999986 35666666444 44443 22333322221 010 1101233
Q ss_pred EEEEEecCCCCEEEEEEC-----------CCeEEEEeCCCCCCcccc
Q 001319 1038 LVVAAHPLEPNQFAIGLT-----------DGSVKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1038 ~~l~~~p~d~~~l~s~~~-----------Dg~v~iWd~~~~~~~~~~ 1073 (1101)
..++++|.++..+..+.. ++...+|....+..+|..
T Consensus 281 ~~i~~~p~~~~~l~~~t~~~~~~w~~~~~~~~~~~~~S~DgG~tW~~ 327 (394)
T 3b7f_A 281 FPIVVHQRDPRTVWVFPMDGSDVWPRVSPGGKPAVYVTRDAGESWQR 327 (394)
T ss_dssp EEEEECSSCTTCEEEEECBCCSSTTCCBCCSSCCEEEESSTTSCCEE
T ss_pred EEEEECCCCCCEEEEEeccCCccceeecCCCceeEEEECCCCCCceE
Confidence 467787755555555532 344567776666677765
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1101 | ||||
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 5e-17 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-11 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-08 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 4e-05 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-16 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-15 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 1e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 5e-04 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-16 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-13 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-11 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 4e-10 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 5e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 9e-07 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 2e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 1e-13 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-11 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-08 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 6e-13 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 5e-06 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 6e-12 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 4e-06 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.001 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 0.004 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 6e-10 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 9e-09 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 8e-08 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 2e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-09 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 4e-04 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 7e-04 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-09 | |
| d1pbyb_ | 337 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 1e-04 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-09 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 2e-06 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 3e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 4e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 6e-09 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-08 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 5e-05 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.001 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 8e-09 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-08 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 4e-06 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 1e-05 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-08 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 2e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 3e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 8e-08 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-07 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 3e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 4e-06 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.002 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.004 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 2e-06 | |
| d1hzua2 | 426 | b.70.2.1 (A:118-543) C-terminal (heme d1) domain o | 1e-04 | |
| d1mdah_ | 368 | b.69.2.1 (H:) Methylamine dehydrogenase, H-chain { | 3e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 3e-06 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-05 | |
| d1ri6a_ | 333 | b.69.11.1 (A:) Putative isomerase YbhE {Escherichi | 2e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 6e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 3e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-04 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.004 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 8e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 9e-06 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-05 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 7e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.001 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 0.003 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 4e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 7e-05 | |
| d1qksa2 | 432 | b.70.2.1 (A:136-567) C-terminal (heme d1) domain o | 0.001 | |
| d1qnia2 | 441 | b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter | 0.002 | |
| d1l0qa2 | 301 | b.69.2.3 (A:1-301) Surface layer protein {Archaeon | 0.003 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 82.2 bits (201), Expect = 5e-17
Identities = 60/405 (14%), Positives = 118/405 (29%), Gaps = 82/405 (20%)
Query: 275 VPQNQVSVLKHPRTPPTPGMVDYQNPDHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLP 334
VP NQ + P P + D + + L+ + + Y+ + LP
Sbjct: 4 VPYNQRANHSKPIPPFL------LDLDSQSVPDALKKQTNDYYILYNPA---------LP 48
Query: 335 RTVAVSLHQ----GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
R + V LH+ S V + F + L N ++ ++ LV++
Sbjct: 49 REIDVELHKSLDHTSVVCCVKFSNDGE--YLATGCNKTTQVYRVSDG-SLVARLSDDSAA 105
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
S + + V +SPDG ++ LI+++ + +
Sbjct: 106 NKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQD 165
Query: 451 VGAVNDLA-------------------------------------FAYPNKLLCVVTCGD 473
+ +++ P +
Sbjct: 166 IYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSL 225
Query: 474 DKLIKVWELSGRKLFN--------FEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLY 525
D+ ++VW+ L GH+ VYS+ Q + S ++D +K W
Sbjct: 226 DRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDG--QSVVSGSLDRSVKLWNL 283
Query: 526 DTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG--------DSFLVEWNESEGTIK 577
++ D P + Y + S T+++ D ++ W++ G
Sbjct: 284 QNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPL 343
Query: 578 RTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNV 617
G R V N F D + + W +
Sbjct: 344 LMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKKI 388
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 63.3 bits (152), Expect = 7e-11
Identities = 17/133 (12%), Positives = 50/133 (37%), Gaps = 20/133 (15%)
Query: 804 EEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPAS------------TF 850
+++V + +++ V+S + + L+N+ + +P +
Sbjct: 254 KDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLS 313
Query: 851 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL------NILV 904
+A ++ I G++D + ++ + L+GH+ + +A + N+
Sbjct: 314 VATTQ-NDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFA 372
Query: 905 SSGADAQLCVWSI 917
+ D + +W
Sbjct: 373 TGSGDCKARIWKY 385
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 54.4 bits (129), Expect = 4e-08
Identities = 45/398 (11%), Positives = 112/398 (28%), Gaps = 52/398 (13%)
Query: 697 TPANCKVERSSPVRP-----SPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT---NS 748
P N + S P+ P + + + + V L + S
Sbjct: 4 VPYNQRANHSKPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTS 63
Query: 749 AV---------GLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVA 799
V LA G N ++++ + + N +
Sbjct: 64 VVCCVKFSNDGEYLATGCNKTTQVYRVSDGSLVAR-------LSDDSAANKDPENLNTSS 116
Query: 800 GVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN 859
+ + + + S + ++ + ++ + + + + + + +
Sbjct: 117 SPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGD 176
Query: 860 IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDT 919
+ G+ D T+ I+++R + L T + + D + VW +T
Sbjct: 177 KLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSET 236
Query: 920 WEKRKSVTIHIPAGKTPTGD-TRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQD 977
+ + +G V F D ++ + + +++ +
Sbjct: 237 GFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPN 296
Query: 978 AL---------SAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSV 1028
+ + + N + + + D + +D + +
Sbjct: 297 SGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLL-----------M 345
Query: 1029 LNG-SQTVYPLVVAA----HPLEPNQFAIGLTDGSVKV 1061
L G +V + VA P E N FA G D ++
Sbjct: 346 LQGHRNSVISVAVANGSSLGP-EYNVFATGSGDCKARI 382
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.8 bits (104), Expect = 4e-05
Identities = 33/260 (12%), Positives = 68/260 (26%), Gaps = 9/260 (3%)
Query: 845 PPASTFL-AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS----KLKGHQKRITGLAFSTS 899
P FL Q + +YN + K H + + FS
Sbjct: 14 KPIPPFLLDLDSQSVPDALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSND 73
Query: 900 LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQL 959
L + G + V+ + ++ A K P + + + V +
Sbjct: 74 GEYLAT-GCNKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPD 132
Query: 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIA 1019
+ A+ E + F G+ V + +R +
Sbjct: 133 GKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDL 192
Query: 1020 PSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKWGVSPPVDN 1079
+ S ++ V P + A G D +V+V + + ++
Sbjct: 193 RTGQCSLTLSIEDGVTTVAV---SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENES 249
Query: 1080 GILNSRTTSSSTSNHTPDQL 1099
G + + S +
Sbjct: 250 GTGHKDSVYSVVFTRDGQSV 269
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 80.2 bits (196), Expect = 2e-16
Identities = 50/342 (14%), Positives = 108/342 (31%), Gaps = 40/342 (11%)
Query: 301 DHEQLMKRLRPAPSAEEVTYSSSRHQTWSLDDLPRTVAVSL-----HQGSTVISMDFHPS 355
+ EQL ++R A + ++ T ++D + R + H + +M +
Sbjct: 10 EAEQLKNQIRDA--RKACADATLSQITNNIDPVGRIQMRTRRTLRGHLAK-IYAMHWGTD 66
Query: 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415
+ LL+ S +G++ +W+ +++ + P + + C+ + + ++
Sbjct: 67 SR-LLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV------- 468
V ++ L Y +QI G +
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTG 185
Query: 469 --------------VTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513
V+ D K+W++ G F GHE+ + +IC N +
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGN--AFAT 243
Query: 514 TAIDGKIKAWLYDTMGSRVDYDAPGHWC--TTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571
+ D + + + Y C T++ +S G L + D W+
Sbjct: 244 GSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYD----DFNCNVWDA 299
Query: 572 SEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ AG + + + DS +K W+
Sbjct: 300 LKADRAGVLAGHDNRVSC-LGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 77.1 bits (188), Expect = 2e-15
Identities = 15/116 (12%), Positives = 42/116 (36%), Gaps = 4/116 (3%)
Query: 804 EEAVPCIALSKNDSYVMSATGG---KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNI 860
E + I N + + + ++ + + + T ++F +
Sbjct: 226 ESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSK-SGRL 284
Query: 861 IAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916
+ G +D ++++ + L GH R++ L + + + D+ L +W+
Sbjct: 285 LLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 65.5 bits (158), Expect = 1e-11
Identities = 25/157 (15%), Positives = 57/157 (36%), Gaps = 8/157 (5%)
Query: 853 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 912
D + G D++ +++VR + GH+ I + F + N + DA
Sbjct: 191 SLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATC 250
Query: 913 CVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHET-QLAIYDASKMERIR 971
++ + ++ + + G T V F+ +L ++ ++DA K +R
Sbjct: 251 RLFDLRADQELMTYSHDNI----ICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAG 306
Query: 972 QWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFD 1008
+SC + + V D + +++
Sbjct: 307 VLA---GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 41.3 bits (95), Expect = 5e-04
Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 3/77 (3%)
Query: 853 FHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQL 912
D + I + +R + L+GH +I + + T +LVS+ D +L
Sbjct: 23 KACADATLSQITNNIDPVGRIQMRT---RRTLRGHLAKIYAMHWGTDSRLLVSASQDGKL 79
Query: 913 CVWSIDTWEKRKSVTIH 929
+W T K ++ +
Sbjct: 80 IIWDSYTTNKVHAIPLR 96
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 78.2 bits (191), Expect = 5e-16
Identities = 47/314 (14%), Positives = 94/314 (29%), Gaps = 54/314 (17%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVS------------------- 382
H+ V + FHP +++ S + I +W+ D +
Sbjct: 16 HRSP-VTRVIFHPVFS-VMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKL 73
Query: 383 ----KPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGS 438
+ +VS V+ P+G+++ A I+++
Sbjct: 74 LASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEV--- 130
Query: 439 NDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPV 497
H V + L+ +C +D+ ++VW ++ ++ H V
Sbjct: 131 QTGYCVKTFTGHREWVRMVRPNQDGTLI--ASCSNDQTVRVWVVATKECKAELREHRHVV 188
Query: 498 YSICPHHKENI------------------QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGH 539
I + + F+ S + D IK W T + +
Sbjct: 189 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDN 248
Query: 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH 599
W +L+ + G + SC D L W+ +T + F T +
Sbjct: 249 WVRGVLFHSGGKFILSCA----DDKTLRVWDYKNKRCMKTLNAHEHFVTSL-DFHKTAPY 303
Query: 600 FLAVGEDSQIKFWD 613
+ D +K W+
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 70.2 bits (170), Expect = 2e-13
Identities = 20/133 (15%), Positives = 49/133 (36%), Gaps = 2/133 (1%)
Query: 784 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFM 842
+H + + + ++ K +++S + I ++++ T + T +
Sbjct: 185 RHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLV 244
Query: 843 SPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 902
+ FH I +D T+ +++ + L H+ +T L F +
Sbjct: 245 GHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPY 303
Query: 903 LVSSGADAQLCVW 915
+V+ D + VW
Sbjct: 304 VVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 62.8 bits (151), Expect = 5e-11
Identities = 42/274 (15%), Positives = 69/274 (25%), Gaps = 68/274 (24%)
Query: 442 RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSI 500
+ + H V + F ++ V+ +D IKVW+ +G +GH V I
Sbjct: 8 PEKYALSGHRSPVTRVIFHPVFSVM--VSASEDATIKVWDYETGDFERTLKGHTDSVQDI 65
Query: 501 CPHHKE----------------------------------------NIQFIFSTAIDGKI 520
H N I S + D I
Sbjct: 66 SFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTI 125
Query: 521 KAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580
K W T + W + + DG+ + SC D + W + K
Sbjct: 126 KMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCS----NDQTVRVWVVATKECKAEL 181
Query: 581 AGFRKKSNGV-------------------VQFDTTQNHFLAVGEDSQIKFWDMDNVNILT 621
R + + L+ D IK WD+ L
Sbjct: 182 REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLM 241
Query: 622 STDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F G + D ++
Sbjct: 242 TLVGHDNWVR--GVLFHSGGKFILSCADDKTLRV 273
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 60.1 bits (144), Expect = 4e-10
Identities = 20/142 (14%), Positives = 48/142 (33%), Gaps = 20/142 (14%)
Query: 808 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ---------- 856
+ +++ + + S + + ++ + T + +++ P+
Sbjct: 147 RMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEAT 206
Query: 857 ---------DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 907
+ G+ D TI +++V L GH + G+ F + ++S
Sbjct: 207 GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCA 266
Query: 908 ADAQLCVWSIDTWEKRKSVTIH 929
D L VW K++ H
Sbjct: 267 DDKTLRVWDYKNKRCMKTLNAH 288
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 53.6 bits (127), Expect = 5e-08
Identities = 36/271 (13%), Positives = 76/271 (28%), Gaps = 27/271 (9%)
Query: 804 EEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAI 863
++V I+ + + S + M + + + I
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVS 118
Query: 864 GTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKR 923
+ D TI ++ V+ GH++ + + + ++ S D + VW + T E +
Sbjct: 119 ASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178
Query: 924 KSVTIHIPAGKT----PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQD-- 977
+ H + P A + + S+ + I+ W
Sbjct: 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
Query: 978 ------ALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNG 1031
+ ++ + + + D + V+D R LN
Sbjct: 239 CLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMK-----------TLNA 287
Query: 1032 -SQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1061
V + H G D +VKV
Sbjct: 288 HEHFVT--SLDFHKTA-PYVVTGSVDQTVKV 315
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 49.7 bits (117), Expect = 9e-07
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929
K L GH+ +T + F +++VS+ DA + VW +T + +++ H
Sbjct: 10 KYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGH 58
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.5 bits (106), Expect = 2e-05
Identities = 30/178 (16%), Positives = 58/178 (32%), Gaps = 9/178 (5%)
Query: 478 KVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP 537
K W + + GH +PV + H + + S + D IK W Y+T
Sbjct: 1 KEWIPRPPEKYALSGHRSPVTRVIFHPVFS--VMVSASEDATIKVWDYETGDFERTLKGH 58
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQ 597
+ + G L SC + + E T+
Sbjct: 59 TDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSV-----SIMPNG 113
Query: 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+H ++ D IK W++ + + + R +++G L+A + D ++
Sbjct: 114 DHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMV--RPNQDGTLIASCSNDQTVRV 169
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 45.5 bits (106), Expect = 2e-05
Identities = 35/231 (15%), Positives = 79/231 (34%), Gaps = 24/231 (10%)
Query: 849 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGA 908
T + FHP +++ +ED+TI +++ + + LKGH + ++F S +L S A
Sbjct: 21 TRVIFHP-VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79
Query: 909 DAQLCVWSIDTWEKRKSV----TIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDA 964
D + +W +E +++ P GD V + D+ + +T
Sbjct: 80 DMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG------ 133
Query: 965 SKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1024
+ + + L+ + D + V+ T + + ++
Sbjct: 134 ------YCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHV 187
Query: 1025 SPSVLNGSQTVYPLV-------VAAHPLEPNQFAIGLTDGSVKVMEPSESE 1068
+ ++ Y + G D ++K+ + S
Sbjct: 188 VECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGM 238
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 71.4 bits (173), Expect = 1e-13
Identities = 31/177 (17%), Positives = 62/177 (35%), Gaps = 5/177 (2%)
Query: 849 TFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQKRITGLAFSTSLNILVSS 906
+ A++ D IAI + +HIY ++ +LK H ++TG+ ++ N +V+
Sbjct: 11 SCHAWNK-DRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTC 69
Query: 907 GADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASK 966
G D VW++ + ++ I V + +
Sbjct: 70 GTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQEND 129
Query: 967 MERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTY 1023
+ + + + NS L+ A CD +F A + AP+ +
Sbjct: 130 WWVCKHIKKPI--RSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPW 184
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 62.6 bits (150), Expect = 9e-11
Identities = 45/262 (17%), Positives = 77/262 (29%), Gaps = 23/262 (8%)
Query: 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+S AW+ D + + H + +Y +G N Q ++ H G V + +A + +
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSG-NKWVQVHELKEHNGQVTGVDWAPDSNRI- 66
Query: 468 VVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
VTCG D+ VW L GR + C N + + I ++
Sbjct: 67 -VTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFE 125
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGS---------------RLFSCGTSKDGDSFLVEWNE 571
+ + S D R+FS + +
Sbjct: 126 QENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWG 185
Query: 572 SEGTIKRTYAGFRKKSNGV--VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGL 629
S+ V V F + V DS + D D + + +E
Sbjct: 186 SKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLP 245
Query: 630 PNLPRLRFSKEGNLLAVTTADN 651
F E +L+A
Sbjct: 246 LLAV--TFITESSLVAAGHDCF 265
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.5 bits (129), Expect = 3e-08
Identities = 29/282 (10%), Positives = 69/282 (24%), Gaps = 30/282 (10%)
Query: 347 VISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406
+ ++ T + + +N E+ ++E + + K +
Sbjct: 10 ISCHAWNKDR-TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQ--------------- 53
Query: 407 ISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466
V+ V W+PD N + T +++ G + + A K
Sbjct: 54 --VTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFA 111
Query: 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526
+ + + + + N + + + D K + +
Sbjct: 112 VGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAY 171
Query: 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT----SKDGDSFLVEWNESEGTI------ 576
SCG + V W + T+
Sbjct: 172 IKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADAD 231
Query: 577 --KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN 616
+ + T++ +A G D + D+
Sbjct: 232 KKMAVATLASETLPLLAVTFITESSLVAAGHDCFPVLFTYDS 273
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 41/337 (12%), Positives = 79/337 (23%), Gaps = 58/337 (17%)
Query: 328 WSLDDLPRTVAVSL--HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
+ L H G V +D+ P ++ ++ +W L R +
Sbjct: 34 YEKSGNKWVQVHELKEHNGQ-VTGVDWAPDSN-RIVTCGTDRNAYVWTLKGRTWKPTLVI 91
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVA--WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQ 443
+ AA + + + K S SRV + + S S D
Sbjct: 92 LRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHP 151
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
+S + A + + V G +F V+ +C
Sbjct: 152 NSVLLAAGSCDFKCRI-FSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS 210
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ S D + D + + + + + S + + D
Sbjct: 211 ANGSRVAWVSH--DSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-----D 263
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQF------------------------------ 593
F V + K ++ G Q
Sbjct: 264 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323
Query: 594 --------------DTTQNHFLAVGEDSQIKFWDMDN 616
+ F G D + WD+ +
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 42.2 bits (97), Expect = 3e-04
Identities = 28/354 (7%), Positives = 85/354 (24%), Gaps = 25/354 (7%)
Query: 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
++ + + ++ ++ + + + + + ++ + N + T
Sbjct: 13 HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIV-TCGT 71
Query: 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710
+ + G + + + + S + C E+ +
Sbjct: 72 DRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW 131
Query: 711 PSPIILAEI---VDSGQCRLVTMPESTDTSSKVVRLLYTNSA-VGLLALGSNGVQKLWKW 766
I I V S ++ + + R+ V + K+
Sbjct: 132 VCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFG 191
Query: 767 HRNEQNPSGKATASAVPQHWLPSSGLLMAND--------------VAGVNLEEAVPCIAL 812
++ S V S +++D + + +
Sbjct: 192 ELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTF 251
Query: 813 SKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHI 872
S V + LF + +F + D
Sbjct: 252 ITESSLVAAGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSS-QRGLTARERFQNLDKKASS 310
Query: 873 YNVRVDEVKSKLKGHQKRITGLAFS----TSLNILVSSGADAQLCVWSIDTWEK 922
H+ ++ ++ + ++G D + +W + + E
Sbjct: 311 EG-SAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 69.5 bits (168), Expect = 6e-13
Identities = 57/346 (16%), Positives = 110/346 (31%), Gaps = 33/346 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
W +L + H + + F ++ GS + + +W L +
Sbjct: 1 WRRGELKSPKVLKGHDDHVITCLQFCG---NRIVSGSDDNTLKVWSAVTGKCL--RTLVG 55
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
S + +I + W+ + H +
Sbjct: 56 HTGGVWSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSR 115
Query: 448 DAHVGAVNDLAFAYPNKLL--------------CVVTCGDDKLIKVWELSGRK-LFNFEG 492
DA + + + L+ VV+ D ++KVW+ L +G
Sbjct: 116 DATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG 175
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
H VYS+ + S ++D I+ W +T + GH T +
Sbjct: 176 HTNRVYSLQFDGI----HVVSGSLDTSIRVWDVETG--NCIHTLTGHQSLTSGMELKDNI 229
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFW 612
L S + DS + W+ G +T G K + V +N + +D +K W
Sbjct: 230 LVSG----NADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 285
Query: 613 DMDN---VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
D+ + L + ++ G + R+R S + AV + + +
Sbjct: 286 DLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.5 bits (111), Expect = 5e-06
Identities = 15/121 (12%), Positives = 44/121 (36%), Gaps = 10/121 (8%)
Query: 808 PCIALSKNDSYVMSATG-GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE 866
+ D+ ++S + ++++ T + + T P + + + N + ++
Sbjct: 219 LTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSD 278
Query: 867 DSTIHIYNVRVDEVKSKLK-----GHQKRITGLAFSTSLNILVSSGAD----AQLCVWSI 917
D T+ +++++ E L G + + S + + + +L V
Sbjct: 279 DGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLDF 338
Query: 918 D 918
D
Sbjct: 339 D 339
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 29/236 (12%), Positives = 66/236 (27%), Gaps = 42/236 (17%)
Query: 852 AFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ 911
N I G++D+T+ +++ + L GH + ++ I S+ +
Sbjct: 22 CLQF-CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLK 80
Query: 912 LCVWSIDTWEKRKS----------------------VTIHIPAGKTPTGDTRVQFNADQV 949
+ T+ + +T + + V
Sbjct: 81 VWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 140
Query: 950 RMLVVHETQLAIYDASKMERIRQWTPQDALSA----PISCAVYSCNSQLVFATFCDGNIG 1005
R + ++ M ++ + L + V + D +I
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIR 200
Query: 1006 VFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKV 1061
V+D +T + T + + + L+ N G D +VK+
Sbjct: 201 VWDVETGNCIH---------------TLTGHQSLTSGMELKDNILVSGNADSTVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 2e-05
Identities = 22/162 (13%), Positives = 53/162 (32%), Gaps = 12/162 (7%)
Query: 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD 473
DG +V I+++ N + + + + +L V+
Sbjct: 183 LQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLT-----SGMELKDNIL--VSGNA 235
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDT---MGS 530
D +K+W++ + S + N F+ +++ DG +K W T + +
Sbjct: 236 DSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIRN 295
Query: 531 RVDYDAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
V ++ G + S + ++ L+ +
Sbjct: 296 LVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVLD 337
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 66.0 bits (159), Expect = 6e-12
Identities = 36/335 (10%), Positives = 86/335 (25%), Gaps = 38/335 (11%)
Query: 339 VSLHQG--STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLP 396
V + Q + + PS LLL+ S +G + ++ +
Sbjct: 4 VQIEQAPKDYISDIKIIPSKS-LLLITSWDGSL----------------TVYKFDIQAKN 46
Query: 397 FQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVND 456
+ + + + T L + Q + +
Sbjct: 47 VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICR 106
Query: 457 LAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN--FEGHEAPVYSICPHHKENIQFIFST 514
+ +KL+ G ++I + + V + N +
Sbjct: 107 ICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVG 166
Query: 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTM----LYSADGSRLFSCGTSK-----DGDSF 565
+ +++ + + L + D
Sbjct: 167 MNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQ 226
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGV-----VQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620
++N S+ R + K +N ++F G D I W++ +
Sbjct: 227 GDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKI 286
Query: 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ ++ + N+L + T+D+ FK
Sbjct: 287 KNFA---KFNEDSVVKIACSDNILCLATSDDTFKT 318
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.9 bits (112), Expect = 4e-06
Identities = 20/224 (8%), Positives = 50/224 (22%), Gaps = 13/224 (5%)
Query: 851 LAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK---GHQKRITGLAFSTSLNILVSSG 907
+ P +++ I + D ++ +Y + L ++ + F + ++ + G
Sbjct: 17 IKIIP-SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75
Query: 908 ADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKM 967
+ + A + + + +
Sbjct: 76 TVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG 135
Query: 968 ERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPS 1027
+ + NS + + + F
Sbjct: 136 VIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIE------- 188
Query: 1028 VLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPSESEGKW 1071
VA P E +A DG V V + +
Sbjct: 189 --ESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.8 bits (91), Expect = 0.001
Identities = 9/70 (12%), Positives = 22/70 (31%), Gaps = 3/70 (4%)
Query: 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 943
+ + I+ + S ++L+ + D L V+ D K + +
Sbjct: 7 EQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC---CN 63
Query: 944 FNADQVRMLV 953
F + +
Sbjct: 64 FIDNTDLQIY 73
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.7 bits (88), Expect = 0.004
Identities = 16/116 (13%), Positives = 33/116 (28%), Gaps = 15/116 (12%)
Query: 829 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNV------------- 875
L +A P++ A + D + +
Sbjct: 177 LPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236
Query: 876 --RVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929
R + K + + FS L ++G+D + W++ T +K K+
Sbjct: 237 AFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF 292
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 59.8 bits (143), Expect = 6e-10
Identities = 24/283 (8%), Positives = 60/283 (21%), Gaps = 4/283 (1%)
Query: 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694
+ S + T G + + + V I S L + +
Sbjct: 57 VTISNPTRHVY--TGGKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIV 114
Query: 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA 754
G + + + P L P+S S +
Sbjct: 115 GGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT 174
Query: 755 LGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 814
L + + G + + + S L + + + +
Sbjct: 175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCP 234
Query: 815 NDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874
++ + L F +D+ ++ +
Sbjct: 235 TGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY-CGKWFVSTGKDNLLNAWR 293
Query: 875 VRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 917
+ + S +V+ D + V+ +
Sbjct: 294 TPYGASIFQS-KESSSVLSCDISVDDKYIVTGSGDKKATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 56.4 bits (134), Expect = 9e-09
Identities = 30/325 (9%), Positives = 86/325 (26%), Gaps = 32/325 (9%)
Query: 333 LPRTVAV--SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDM 390
+PR +L+ G V ++ + + G + +W+++
Sbjct: 38 IPRHARQINTLNHGEVVCAVTISNPTR--HVYTGGKGCVKVWDISHPG------------ 83
Query: 391 AACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAH 450
P + + PDG + V + ++ A + +
Sbjct: 84 --NKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSA 141
Query: 451 VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQF 510
+ G+ + + + + + C +
Sbjct: 142 PACYALAISPDSKVCFSCCSDGNIAVWDLH----NQTLVRQFQGHTDGASCIDISNDGTK 197
Query: 511 IFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWN 570
+++ +D +++W +D ++ Y G L S + + V
Sbjct: 198 LWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKP 256
Query: 571 ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLP 630
+ ++F F++ G+D+ + W + + +
Sbjct: 257 DKYQLHLHESCVLS------LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVL 310
Query: 631 NLPRLRFSKEGNLLAVTTADNGFKI 655
+ S + + + D +
Sbjct: 311 S---CDISVDDKYIVTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 53.3 bits (126), Expect = 8e-08
Identities = 22/136 (16%), Positives = 43/136 (31%), Gaps = 8/136 (5%)
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + D + + + P G ++ V +++ + Q+
Sbjct: 206 TVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHV----NKPDKYQL 261
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
H V L FAY K V+ G D L+ W + V S +
Sbjct: 262 HLHESCVLSLKFAYCGKWF--VSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD- 318
Query: 508 IQFIFSTAIDGKIKAW 523
++I + + D K +
Sbjct: 319 -KYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 11/71 (15%), Positives = 25/71 (35%), Gaps = 6/71 (8%)
Query: 412 VAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC 471
+ ++ G + +L+ + + Q +V + +K + VT
Sbjct: 271 LKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQS----KESSSVLSCDISVDDKYI--VTG 324
Query: 472 GDDKLIKVWEL 482
DK V+E+
Sbjct: 325 SGDKKATVYEV 335
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.3 bits (139), Expect = 1e-09
Identities = 42/295 (14%), Positives = 85/295 (28%), Gaps = 43/295 (14%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELA-------------------MRDRLVSKPF 385
V + + ++ G + I +W+ +R++
Sbjct: 16 KGVYCLQYDD---QKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGS 72
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
+ + + + + + + + I ++ A D+
Sbjct: 73 SDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR 132
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPHH 504
+ H AVN + F +V+ D+ IKVW + + GH+ + +
Sbjct: 133 VLVGHRAAVNVVDFDDK----YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRD 188
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + S + D I+ W D GH D R+ S D
Sbjct: 189 ----RLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRFDNKRIVSG----AYDG 238
Query: 565 FLVEWNESEGTIKRTYAG------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
+ W+ R AG + S V + + ++ D I WD
Sbjct: 239 KIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 7e-07
Identities = 29/222 (13%), Positives = 58/222 (26%), Gaps = 41/222 (18%)
Query: 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEA 495
G + L++ V L + ++ + V+ D IK+W+ + GH
Sbjct: 1 GRHSLQRIHCRSETSKGVYCLQYD--DQKI--VSGLRDNTIKIWDKNTLECKRILTGHTG 56
Query: 496 PVYSICPHHKENIQFI-----FSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
V + + I ++ V + +
Sbjct: 57 SVLCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRS 116
Query: 551 SRLFSCGTSKD----------------------------GDSFLVEWNESEGTIKRTYAG 582
++ + D GD + WN S RT G
Sbjct: 117 IAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176
Query: 583 FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624
G+ ++ D+ I+ WD++ L +
Sbjct: 177 H---KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE 215
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 44.5 bits (103), Expect = 4e-05
Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 26/205 (12%)
Query: 857 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916
D+ I G D+TI I++ E K L GH + L + + I
Sbjct: 24 DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVII---------TGSSD 74
Query: 917 IDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQ 976
+ + + + + + +A++D + I
Sbjct: 75 STVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVL 134
Query: 977 DALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1036
A ++ + + + D I V++ T + +
Sbjct: 135 VGHRAAVNVVDFDDKYIVSASG--DRTIKVWNTSTCEFVR---------------TLNGH 177
Query: 1037 PLVVAAHPLEPNQFAIGLTDGSVKV 1061
+A G +D ++++
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRL 202
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 4e-04
Identities = 25/149 (16%), Positives = 55/149 (36%), Gaps = 14/149 (9%)
Query: 825 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL 884
I ++N T + + T L + ++ G+ D+TI ++++ L
Sbjct: 158 RTIKVWNTSTCEFVRTLNGHKRGIACLQYRD---RLVVSGSSDNTIRLWDIECGACLRVL 214
Query: 885 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQF 944
+GH++ + +VS D ++ VW + ++ + +T +
Sbjct: 215 EGHEELVRC--IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCL-RTLVEHS---- 267
Query: 945 NADQVRMLVVHETQLAIYDASKMERIRQW 973
+V L E Q+ +S + I W
Sbjct: 268 --GRVFRLQFDEFQIVS--SSHDDTILIW 292
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 7e-04
Identities = 28/162 (17%), Positives = 51/162 (31%), Gaps = 20/162 (12%)
Query: 320 YSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDR 379
S+S +T + + V G + L++ GSS+ I LW++
Sbjct: 152 VSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDR-LVVSGSSDNTIRLWDIECGAC 210
Query: 380 LVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSN 439
L + + R+ + V + + AG+
Sbjct: 211 LRVLEGHEELVRCIRFDNK------------RIVSGAYDGKIKVWDLVAALDPRAPAGTL 258
Query: 440 DLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481
LR + H G V L F ++ V+ D I +W+
Sbjct: 259 CLRT---LVEHSGRVFRLQFD-EFQI---VSSSHDDTILIWD 293
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 58.3 bits (139), Expect = 2e-09
Identities = 35/346 (10%), Positives = 88/346 (25%), Gaps = 14/346 (4%)
Query: 597 QNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKIL 656
+++ LA ++ D + + + P + G + T + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVK 60
Query: 657 ANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716
+ + +L ++ E + AL S + V
Sbjct: 61 IDLVTGETLGRIDLSTPEERVKSLFGAAL----SPDGKTLAIYESPVRLELTHFEVQPTR 116
Query: 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 776
+ D+ E+ + +L L + + K
Sbjct: 117 VALYDAETLSRRKAFEAPRQ----ITMLAWARDGSKLYGLGRDLHVMDPEAGTLVED--K 170
Query: 777 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK 836
S + + L + N + A D +A + ++ T +
Sbjct: 171 PIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGE 230
Query: 837 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 896
+ + F + + +++ + ++ +
Sbjct: 231 MAMREVRIMDVFYFSTAVNPAKTRAFG--AYNVLESFDLEKNASIKRV-PLPHSYYSVNV 287
Query: 897 STSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRV 942
ST + + GA L + +T EK+ V + R+
Sbjct: 288 STDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGN-ASMSLASVRL 332
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 34/345 (9%), Positives = 84/345 (24%), Gaps = 45/345 (13%)
Query: 316 EEVTYSSSRHQTWSLDDLP-----RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEIT 370
+ + +R + D + + ++ G T + P + + + +
Sbjct: 1 RDYILAPARPDKLVVIDTEKMAVDKVITIA-DAGPTPMVPMVAPGGRIAYATVNKSESLV 59
Query: 371 LWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430
+L + L + S+ A SPDG +A + +
Sbjct: 60 KIDLVTGETLGRIDLSTPEERVK--------------SLFGAALSPDGKT--LAIYESPV 103
Query: 431 QLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNF 490
+L + + DA + AF P ++ + D + +
Sbjct: 104 RLELTHFEVQPTRVALYDAETLSRRK-AFEAPRQITMLAWARDGSKLYGLGRDLHVMDPE 162
Query: 491 EGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG 550
G + P + D +++ G
Sbjct: 163 AGT---LVEDKPIQSWEAETYAQ--PDVLAVWNQHESSGVMATPFYTARKDIDPADPT-- 215
Query: 551 SRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIK 610
+ L+ + G + R A G + ++
Sbjct: 216 ----------AYRTGLLTMDLETGEMAMR--EVRIMDVFYFSTAVNPAKTRAFGAYNVLE 263
Query: 611 FWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+D++ + + S +G+ + + A
Sbjct: 264 SFDLEKNASIKRVPL-PHSYY--SVNVSTDGSTVWLGGALGDLAA 305
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 57.8 bits (138), Expect = 3e-09
Identities = 39/362 (10%), Positives = 84/362 (23%), Gaps = 30/362 (8%)
Query: 591 VQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR-LRFSKEGNLLAVTTA 649
+ + + + D+ + + S P + + V
Sbjct: 2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDK--FGPGTAMMAPDNRTAYVLNN 59
Query: 650 DNG-FKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708
G + + A + + + S A+ ++ P +
Sbjct: 60 HYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHY-- 117
Query: 709 VRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLA-------LGSNGVQ 761
RL + +K VR V L+ +
Sbjct: 118 ------------VVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDI 165
Query: 762 KLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 821
+ + + P + + +
Sbjct: 166 YKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPAT 225
Query: 822 ATGGK-ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880
A ++ T K T + F + + + Y+++ ++
Sbjct: 226 ADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIY-GVLNRLAKYDLKQRKL 284
Query: 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 940
+AF + L G L V++ DT EK K I +P G T
Sbjct: 285 IKAAN-LDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVK--NIKLPGGDMSTTTP 341
Query: 941 RV 942
+V
Sbjct: 342 QV 343
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 48.6 bits (114), Expect = 2e-06
Identities = 31/337 (9%), Positives = 78/337 (23%), Gaps = 56/337 (16%)
Query: 352 FHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR 411
H+ ++V + + + ++A V K +
Sbjct: 4 LKAGHE-YMIVTNYPNNLHVVDVASDT--VYKSCVM----------------PDKFGPGT 44
Query: 412 VAWSPDGNYVGVA----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLC 467
+PD V + I L + + S ++ A + K +
Sbjct: 45 AMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVY 104
Query: 468 VVTCGDDKLIKVWELSGRKLFNFEGHE-APVYSICPHHKENIQFIFSTAIDGKI------ 520
+L + + +L F + + ++ A DG +
Sbjct: 105 ATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPD 164
Query: 521 -KAWLYDT--------MGSRVDYDAPGHWCTTMLYSADGSRLFSC-------------GT 558
T + + FS
Sbjct: 165 IYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPA 224
Query: 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618
+ D + + G + + G +++ +D+
Sbjct: 225 TADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPK-DPNQIYGVLNRLAKYDLKQRK 283
Query: 619 ILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
++ + + + F K+G+ L + N +
Sbjct: 284 LIKAANL-DHTYY--CVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 45.1 bits (105), Expect = 3e-05
Identities = 14/158 (8%), Positives = 36/158 (22%), Gaps = 11/158 (6%)
Query: 893 GLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRML 952
G A ++ + L V + + K + +P P D
Sbjct: 1 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYK--SCVMPDKFGPGT---AMMAPDNRTAY 55
Query: 953 VVHET--QLAIYDASKMERIRQW----TPQDALSAPISCAVYSCNSQLVFATFCDGNIGV 1006
V++ + D + P + + S A+ ++ +
Sbjct: 56 VLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLND 115
Query: 1007 FDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP 1044
+ + L + + +
Sbjct: 116 HYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAA 153
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 44.7 bits (104), Expect = 4e-05
Identities = 21/237 (8%), Positives = 56/237 (23%), Gaps = 25/237 (10%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
G ++ S P + + + ++ + +++ A
Sbjct: 86 EVGRSMYSFAISP-DGKEVYATVNPTQRLNDHYVVKPPRL----EVFSTADGLEAKPVRT 140
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI-------------- 447
F +P V + + DG+ + + + + + L +
Sbjct: 141 F-PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWP 199
Query: 448 ---DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
H ++ + + T +L K E +
Sbjct: 200 HQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLR 259
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
++ + + H + + G +L+ GT D
Sbjct: 260 SPKDPNQIYGV-LNRLAKYDLKQ-RKLIKAANLDHTYYCVAFDKKGDKLYLGGTFND 314
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 56.5 bits (134), Expect = 6e-09
Identities = 35/314 (11%), Positives = 82/314 (26%), Gaps = 27/314 (8%)
Query: 313 PSAEEVTYSSSRHQT-WSLDD----LPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSN 366
P+ + Y + LDD +P V + H S V ++ F P + L G +
Sbjct: 27 PTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDES 86
Query: 367 GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426
G++ +W + S F+ + +S ++W +G + V
Sbjct: 87 GKVIVWGWTF-----------DKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGE 135
Query: 427 KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV--WELSG 484
+ + V +
Sbjct: 136 GRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFS 195
Query: 485 RKLFNFEGHEAPVYSICPHHKEN--IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCT 542
+ V + + + S + + D P
Sbjct: 196 ASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGI 255
Query: 543 TMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ--FDTTQNHF 600
L D + + G D+ + W+ + + + +++ T
Sbjct: 256 FALSWLDSQKFATVG----ADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 311
Query: 601 LAVGEDSQIKFWDM 614
+++ D + F+++
Sbjct: 312 ISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.8 bits (127), Expect = 5e-08
Identities = 36/318 (11%), Positives = 88/318 (27%), Gaps = 27/318 (8%)
Query: 345 STVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404
+ + + P+ + + + + D +P
Sbjct: 18 NFTTHLSYDPTTNAIAYPCGKSAFV----------------RCLDDGDSKVPPVVQFTGH 61
Query: 405 VPISVSRVAWSP--DGNYVGVAFTKHLIQLYSYAGSND-----LRQHSQIDAHVGAVNDL 457
V+ V +SP Y+ + ++ + + + S+ G ++D+
Sbjct: 62 GSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDI 121
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID 517
++ + + LCVV G D + + C + + D
Sbjct: 122 SWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDD 181
Query: 518 GKIK---AWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574
G + + S + G + + +S D S S +
Sbjct: 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFL 241
Query: 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634
+ + + + F VG D+ I+ WD+ + + +
Sbjct: 242 KYIEDDQEPVQGGIFALSWLDS-QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300
Query: 635 LRFSKEGNLLAVTTADNG 652
+ GN ++ + +G
Sbjct: 301 VGVVATGNGRIISLSLDG 318
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 5e-05
Identities = 13/91 (14%), Positives = 27/91 (29%), Gaps = 3/91 (3%)
Query: 830 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK 889
F P A D+ A D+TI +++V + K ++
Sbjct: 235 GKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQ 294
Query: 890 RITGLAFSTSL---NILVSSGADAQLCVWSI 917
++ ++S D L + +
Sbjct: 295 QLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.9 bits (91), Expect = 0.001
Identities = 26/175 (14%), Positives = 59/175 (33%), Gaps = 12/175 (6%)
Query: 838 MTTFMSPPPA-----STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLKGHQKR 890
+ + P P+ +T L++ P N I + + + + +V + GH
Sbjct: 5 LKEIIPPQPSTQRNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSS 64
Query: 891 -ITGLAFSTSLN--ILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD--TRVQFN 945
+T + FS L S ++ VW ++ SV +++ + + + ++
Sbjct: 65 VVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWD 124
Query: 946 ADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000
+ R+ VV E + + S I+ + + T
Sbjct: 125 FEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVG 179
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 56.1 bits (133), Expect = 8e-09
Identities = 33/304 (10%), Positives = 81/304 (26%), Gaps = 20/304 (6%)
Query: 313 PSAEEVTYSSSRH-QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITL 371
P+ +++ Y + T + L T + H PS G +G + +
Sbjct: 27 PAGDKIQYCNGTSVYTVPVGSLTDTEIYTEHSHQ-TTVAKTSPSGY-YCASGDVHGNVRI 84
Query: 372 WELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQ 431
W+ ++ ++ + + + + + G L
Sbjct: 85 WDTTQTTHILKTTIPVFSGPVKDISWDSESKR----------IAAVGEGRERFGHVFLFD 134
Query: 432 LYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE 491
+ G+ + + + V F
Sbjct: 135 TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHS 194
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
P S+ + + +DG D V + T DG+
Sbjct: 195 VRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS---PDGT 251
Query: 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611
++ S D + WN + +++T + + + T+ +++ + I F
Sbjct: 252 KIASAS----ADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINF 307
Query: 612 WDMD 615
+ +
Sbjct: 308 VNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 54.1 bits (128), Expect = 4e-08
Identities = 41/332 (12%), Positives = 91/332 (27%), Gaps = 31/332 (9%)
Query: 326 QTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPF 385
QT LPRT T + + P+ + + + +
Sbjct: 5 QTALFPSLPRT------ARGTAVVLGNTPAGDKI--QYCNGTSVYTVPVGSLT------- 49
Query: 386 KIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS 445
I+ + + SP G Y ++++ + +
Sbjct: 50 ------------DTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-ILKT 96
Query: 446 QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHK 505
I G V D+++ +K + V G ++ V+ +A +
Sbjct: 97 TIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP 156
Query: 506 ENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSF 565
I S + D + + + + + ++ Y+ DGS S G +
Sbjct: 157 SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 216
Query: 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQN--HFLAVGEDSQIKFWDMDNVNILTST 623
G + S V + + + D IK W++ + + +
Sbjct: 217 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 276
Query: 624 DAEGGLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + +L L +A+
Sbjct: 277 PVGTRIED-QQLGIIWTKQALVSISANGFINF 307
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 47.6 bits (111), Expect = 4e-06
Identities = 18/89 (20%), Positives = 31/89 (34%), Gaps = 1/89 (1%)
Query: 831 NMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK- 889
F+ + S F D IA + D TI I+NV +V+ + +
Sbjct: 223 KTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 890 RITGLAFSTSLNILVSSGADAQLCVWSID 918
L + LVS A+ + + +
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.4 bits (108), Expect = 1e-05
Identities = 10/73 (13%), Positives = 19/73 (26%), Gaps = 2/73 (2%)
Query: 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSG 907
+ L P + I ++++ V H + T S S S
Sbjct: 20 AVVLGNTP-AGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGD 77
Query: 908 ADAQLCVWSIDTW 920
+ +W
Sbjct: 78 VHGNVRIWDTTQT 90
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 55.0 bits (130), Expect = 2e-08
Identities = 23/89 (25%), Positives = 41/89 (46%), Gaps = 2/89 (2%)
Query: 830 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVD-EVKSKLKGHQ 888
+S PA + +++A G+ D+ I IY+V+ ++ L H+
Sbjct: 199 SRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHK 258
Query: 889 KRITGLAFSTSLNILVSSGADAQLCVWSI 917
+ L + T + LVSSGADA + W++
Sbjct: 259 DGVNNLLWETP-STLVSSGADACIKRWNV 286
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.6 bits (98), Expect = 2e-04
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEK 922
DEV + GH K IT L + L+S D ++ WS + +
Sbjct: 3 DEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQ 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.9 bits (96), Expect = 3e-04
Identities = 11/95 (11%), Positives = 21/95 (22%), Gaps = 10/95 (10%)
Query: 447 IDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKE 506
I H + L +++ D I W S + H + S+ +
Sbjct: 9 ISGHNKGITALTVNP------LISGSYDGRIMEWSSSSM----HQDHSNLIVSLDNSKAQ 58
Query: 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWC 541
I ++ A
Sbjct: 59 EYSSISWDDTLKVNGITKHEFGSQPKVASANNDGF 93
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.7 bits (93), Expect = 6e-04
Identities = 18/96 (18%), Positives = 33/96 (34%), Gaps = 5/96 (5%)
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
++ + + P + + V I +YS + +
Sbjct: 194 REVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIK- 252
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480
++AH VN+L + P+ L V+ G D IK W
Sbjct: 253 -ALNAHKDGVNNLLWETPSTL---VSSGADACIKRW 284
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.2 bits (89), Expect = 0.002
Identities = 31/287 (10%), Positives = 72/287 (25%), Gaps = 28/287 (9%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWEL---------AMRDRLVSKPFKIWDMAA 392
H + ++ +P L+ GS +G I W + SK + ++
Sbjct: 12 HNKG-ITALTVNP-----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKAQEYSSISW 65
Query: 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVG 452
I K S +VA + + + V + + + ++
Sbjct: 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRLNSPGSA 125
Query: 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIF 512
N + + G+ + A I E
Sbjct: 126 V-----SLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAG 180
Query: 513 STAIDGKIKA-----WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ R W + + + D+ +
Sbjct: 181 DVMGKILLYDLQSREVKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIF 240
Query: 568 EWN-ESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWD 613
++ + I + + N ++ + ++ G D+ IK W+
Sbjct: 241 IYSVKRPMKIIKALNAHKDGVNNLLWET--PSTLVSSGADACIKRWN 285
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.4 bits (126), Expect = 8e-08
Identities = 14/90 (15%), Positives = 32/90 (35%), Gaps = 3/90 (3%)
Query: 830 FNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE-VKSKLKGHQ 888
F + + +NI+ G ++ +IYN+R + V + +
Sbjct: 266 RGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSG-SENQFNIYNLRSGKLVHANILKDA 324
Query: 889 KRITGLAFSTSLNILVSSGADAQLCVWSID 918
+I + F ++ + D Q + +D
Sbjct: 325 DQIWSVNFKGK-TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 51.4 bits (121), Expect = 3e-07
Identities = 20/139 (14%), Positives = 52/139 (37%), Gaps = 9/139 (6%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSIC 501
Q + + H+ +V + + + +T DDK+I+V++ + + L GH+ V+++
Sbjct: 4 QRTTLRGHMTSVIT-CLQFEDNYV--ITGADDKMIRVYDSINKKFLLQLSGHDGGVWALK 60
Query: 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561
H + S + D ++ W ++ + + + S+D
Sbjct: 61 YAHG---GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 562 GDSFLVEWNESEGTIKRTY 580
+ W + + +
Sbjct: 118 NTLHV--WKLPKESSVPDH 134
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.4 bits (113), Expect = 3e-06
Identities = 12/86 (13%), Positives = 29/86 (33%), Gaps = 7/86 (8%)
Query: 443 QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKL--FNFEGHEAPVYSI 500
+ H ++ + Y + + + G + ++ L KL N ++S+
Sbjct: 273 YSRKFSYHHTNLSAITTFYVSDNI--LVSGSENQFNIYNLRSGKLVHANILKDADQIWSV 330
Query: 501 CPHHKENIQFIFSTAIDGKIKAWLYD 526
K + + DG+ + D
Sbjct: 331 NFKGK---TLVAAVEKDGQSFLEILD 353
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 48.0 bits (112), Expect = 4e-06
Identities = 17/64 (26%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 857 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916
++N + G +D I +Y+ + +L GH + L ++ ILVS D + VW
Sbjct: 22 EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWD 80
Query: 917 IDTW 920
I
Sbjct: 81 IKKG 84
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.3 bits (92), Expect = 0.001
Identities = 13/131 (9%), Positives = 36/131 (27%), Gaps = 8/131 (6%)
Query: 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDT 940
++ L+GH + N +++ D + V+ + ++ H G
Sbjct: 5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGH------DGGVW 57
Query: 941 RVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFC 1000
+++ ++ + K + V N + +
Sbjct: 58 ALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 1001 DGNIGVFDADT 1011
D + V+
Sbjct: 117 DNTLHVWKLPK 127
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.002
Identities = 35/328 (10%), Positives = 90/328 (27%), Gaps = 16/328 (4%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKI 387
+ + + +S H G V ++ + +L+ GS++ + +W++
Sbjct: 38 YDSINKKFLLQLSGHDGG-VWALKYAHGG--ILVSGSTDRTVRVWDIKKGCCTHVFEGHN 94
Query: 388 WDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQI 447
+ + +I V S Y +
Sbjct: 95 STVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFV 154
Query: 448 DAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKEN 507
G + + + + V D+ LI + L+ GH +Y +
Sbjct: 155 GVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIY--STIYDHE 212
Query: 508 IQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567
+ S ++D I+ W + + S +
Sbjct: 213 RKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--------DKFLVSAAADGS 264
Query: 568 EWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEG 627
R ++ + + F + ++ L G ++Q +++ + ++ +
Sbjct: 265 IRGWDANDYSRKFSYHHTNLSAITTFYVS-DNILVSGSENQFNIYNLRSGKLVHANI-LK 322
Query: 628 GLPNLPRLRFSKEGNLLAVTTADNGFKI 655
+ + F L+A D +
Sbjct: 323 DADQIWSVNFK-GKTLVAAVEKDGQSFL 349
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 23/172 (13%), Positives = 47/172 (27%), Gaps = 26/172 (15%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H S + + F ++ G+ + I +++ + L+
Sbjct: 11 HMTSVITCLQFED---NYVITGADDKMIRVYDSINKKFLLQ------------------- 48
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAY 461
V + ++ G V + + + H V L
Sbjct: 49 LSGHDGGVWALKYAHGGILVSGSTDRT----VRVWDIKKGCCTHVFEGHNSTVRCLDIVE 104
Query: 462 PNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFS 513
+ +VT D + VW+L G E + +EN F+
Sbjct: 105 YKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGV 156
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 48.8 bits (115), Expect = 2e-06
Identities = 32/291 (10%), Positives = 73/291 (25%), Gaps = 31/291 (10%)
Query: 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMR 377
+ + +G TV + +HP + ++ S + + ++
Sbjct: 125 AGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHE--HPEFIVNVK 182
Query: 378 DRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437
+ K+ + + ++ W Y A +
Sbjct: 183 E-----TGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFMTAANNSNKVAVIDSK 237
Query: 438 SNDLRQHSQIDAHVGAVNDLAFAYPNKLLC---------VVTCGDDKLIKVWELSGRKLF 488
L + F +P ++ + + +K+
Sbjct: 238 DRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVA 297
Query: 489 NFEGHEAPVYSICPHHKE-NIQFIFSTAIDGKIKAWL--YDT-----------MGSRVDY 534
+G I H K ++ + D +I + +D + D
Sbjct: 298 ELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADL 357
Query: 535 DAPGHWCTTMLYSADGSRL-FSCGTSKDGDSFLVEWNESEGTIKRTYAGFR 584
Y+ G + FS K+ S LV ++ +K R
Sbjct: 358 GEGAKRVVQPEYNKRGDEVWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR 408
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Score = 43.4 bits (101), Expect = 1e-04
Identities = 26/246 (10%), Positives = 57/246 (23%), Gaps = 24/246 (9%)
Query: 328 WSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLV-GSSNGEITLWELAMRDRLVSKPFK 386
W + ++ + V + L V G+I L + + +
Sbjct: 2 WGMPEMRESWKVLVKPEDRPKKQLNDLDLPNLFSVTLRDAGQIALVDGDSKKIV------ 55
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHS- 445
I D +V S G Y+ V I + +
Sbjct: 56 ------------KVI--DTGYAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEI 101
Query: 446 -QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH 504
+ Y ++ + + + V + H
Sbjct: 102 KIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHP 161
Query: 505 KENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564
+ + I ++ + + +T G + + T+ L G
Sbjct: 162 EPRVAAIIASHEHPEFIVNVKET-GKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRY 220
Query: 565 FLVEWN 570
F+ N
Sbjct: 221 FMTAAN 226
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Score = 48.4 bits (114), Expect = 3e-06
Identities = 29/359 (8%), Positives = 75/359 (20%), Gaps = 35/359 (9%)
Query: 241 TAAAANANALAGWMANASASSSVQAAVVTASSIPVPQNQVSVLKHPRTPPTPGMVDYQNP 300
AAA+ A A G + + + + +T + + V T G
Sbjct: 9 AAAASAAAASDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSC-AGCGVTLGHSLGAFL 67
Query: 301 DHEQL---MKRLRPAPSAEEVTYSSSRHQT---WSLDDLPRTVAVSLHQGSTVI------ 348
A ++ + R + + L
Sbjct: 68 SLAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVH 127
Query: 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPIS 408
+ S LL + + ++ A+C + +
Sbjct: 128 IIGNCASSACLLFFLFGSSAAAGLSVPGA-----SDDQLTKSASCFHIHPGA-------A 175
Query: 409 VSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCV 468
+ S + Q+ A + +
Sbjct: 176 ATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQ 235
Query: 469 VTCGDDKLIKVWELSGRKLFNFEGHEAP--VYSICPHHKENIQFIFS-----TAIDGKIK 521
+ G + + + + I + + +
Sbjct: 236 GDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAEN 295
Query: 522 AWLYDTM-GSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579
G + GH ++ + DG+ ++ L ++ + + +
Sbjct: 296 TSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEV--LDIYDAASDQDQSS 352
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 48.3 bits (113), Expect = 3e-06
Identities = 47/351 (13%), Positives = 93/351 (26%), Gaps = 30/351 (8%)
Query: 600 FLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANA 659
++A E QI W++++ LT T + + S + L V ++LA
Sbjct: 7 YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEF-RVLAYR 65
Query: 660 IGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEI 719
I + + N + + +
Sbjct: 66 IAPDDGALTFAAESALPGSL---THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVD 122
Query: 720 VDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATA 779
V G S + S L L+ + +
Sbjct: 123 VVEGLD----GCHSANISPDNRTLWVPAL--------KQDRICLFTVSDDGHLVAQDPAE 170
Query: 780 SAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMT 839
+ P + E+ C+ + V ++ + T +M
Sbjct: 171 VTTVEGAGP-------RHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223
Query: 840 TFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQ---KRITGLAF 896
S + + P ++ A S I +++V D +G Q + G
Sbjct: 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV 283
Query: 897 STSLNILVSSGADA-QLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNA 946
S L+++G + + V+ I + G+ P V NA
Sbjct: 284 DHSGKYLIAAGQKSHHISVYEIVGEQGLLHEKGRYAVGQGPMW---VVVNA 331
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 34/315 (10%), Positives = 83/315 (26%), Gaps = 39/315 (12%)
Query: 357 QTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSP 416
QT+ + + +I +W L L + DVP V + SP
Sbjct: 4 QTVYIASPESQQIHVWNLNHEGAL-----------------TLTQVVDVPGQVQPMVVSP 46
Query: 417 DGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT--CGD 473
D Y+ V + + Y A + + A G++ ++ + + + V + G+
Sbjct: 47 DKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGN 106
Query: 474 DKLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD 533
+ ++ + + + +S ++ + + + L+
Sbjct: 107 VSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPA---LKQDRICLFTVSDDGHL 163
Query: 534 YDAPGHWCTTMLYSADGSRLFSC------GTSKDGDSFLVEWNESEGTIKRTYAGFRKKS 587
TT+ + +F ++ S V +
Sbjct: 164 VAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMP 223
Query: 588 NGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNL---------PR-LRF 637
+ + ++ + S +G + + PR
Sbjct: 224 ENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNV 283
Query: 638 SKEGNLLAVTTADNG 652
G L +
Sbjct: 284 DHSGKYLIAAGQKSH 298
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Score = 42.1 bits (97), Expect = 2e-04
Identities = 16/153 (10%), Positives = 43/153 (28%), Gaps = 8/153 (5%)
Query: 864 GTEDSTIHIYNVRVDEVKSKLK--GHQKRITGLAFSTSLNIL-VSSGADAQLCVWSIDTW 920
E IH++N+ + + + ++ + S L V + ++ + I
Sbjct: 10 SPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPD 69
Query: 921 EKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV--HETQLAIYDASKMERIRQWTPQDA 978
+ + + T + + + V + +++ + +
Sbjct: 70 DGALTFAAESALPGSLTH---ISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126
Query: 979 LSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011
L S + N L I +F
Sbjct: 127 LDGCHSANISPDNRTLWVPALKQDRICLFTVSD 159
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.5 bits (111), Expect = 6e-06
Identities = 28/228 (12%), Positives = 60/228 (26%), Gaps = 8/228 (3%)
Query: 325 HQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKP 384
+L TV + S+D L+ G +NG + + EL+ L +
Sbjct: 165 LNWSPTLELQGTVESPMTPSQFATSVDISERG--LIATGFNNGTVQISELSTLRPLYNFE 222
Query: 385 FKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQH 444
+ + + + + G ++ +
Sbjct: 223 SQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQAS 282
Query: 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWEL-SGRKLFNFEGHEAPVYSICPH 503
AH V L+F + + + G D ++ W++ + ++ H +
Sbjct: 283 LGEFAHSSWVMSLSFNDSGE--TLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI 340
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
+ +L S + D C D S
Sbjct: 341 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCV---CLDRS 385
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 51/378 (13%), Positives = 114/378 (30%), Gaps = 44/378 (11%)
Query: 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMD-------NVNILTSTDAEGGLPNLPRLR--- 636
+ + ++ D +K WD + + GL ++ L+
Sbjct: 14 DADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIE 73
Query: 637 -FSKEGNLLAVTTADNGFKI--LANAIGLRSLRAVENPPFEALRTPIESVALKVSASSA- 692
+ E L+A T+ + + + + ++ ALK AS+
Sbjct: 74 RDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDR 133
Query: 693 ------VSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 746
V++ + + P L + S L ES T S+ +
Sbjct: 134 LLSHRLVATDVKGTTYIWKFHPFADESNSL-TLNWSPTLELQGTVESPMTPSQFATSV-D 191
Query: 747 NSAVGLLALGS-NGVQKLWKWHRNEQNPSGKATASAVPQH----WLPSSGLLMANDVAGV 801
S GL+A G NG ++ + + ++ S + + S +A
Sbjct: 192 ISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHD 251
Query: 802 NLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNII 861
+ + ++ + S + S + ++++ L+F+ +
Sbjct: 252 SNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWV------MSLSFNDS-GETL 304
Query: 862 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRI----TGLAFSTSLNILVSSGADAQLCVWSI 917
D + ++V+ E + L H I LA + L G V+ +
Sbjct: 305 CSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPG------VFDV 358
Query: 918 DTWEKRKSVTIHIPAGKT 935
+K + ++
Sbjct: 359 KFLKKGWRSGMGADLNES 376
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 18/173 (10%), Positives = 41/173 (23%), Gaps = 21/173 (12%)
Query: 444 HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN------------FE 491
+ AH + ++ + V+C D +KVW+ N
Sbjct: 7 ANAGKAHDADIFSVSAC-NSFT---VSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSG 62
Query: 492 GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGS 551
H V + + +T+ G + + +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFY--RITREDETKKVIFEKLDLLDSDMKKH 120
Query: 552 RLFSCGTSKDGDSFLVEW---NESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL 601
++ D L + +GT + + + + L
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLEL 173
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 43.3 bits (100), Expect = 1e-04
Identities = 36/352 (10%), Positives = 87/352 (24%), Gaps = 61/352 (17%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI 401
H + S+ S + S +G + +W+ + D K S S
Sbjct: 13 HDAD-IFSVSACNSF---TVSCSGDGYLKVWDNKLLDNENPKDKSY------SHFVHKSG 62
Query: 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR-------QHSQIDAHVGAV 454
V + + + + V + Y ++ + D +
Sbjct: 63 LHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSF 122
Query: 455 NDLAFAYPNKLLC---VVTCGDDKLIKVWEL-------------------SGRKLFNFEG 492
L + N L +V +W+ + +
Sbjct: 123 WALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT 182
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIK---------------AWLYDTMGSRVDYDAP 537
S+ + I + +G ++ + +
Sbjct: 183 PSQFATSVDISER---GLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKF 239
Query: 538 GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT-- 595
+ + + D + + + + G S+ V+
Sbjct: 240 SPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFND 299
Query: 596 TQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG--LPNLPRLRFSKEGNLLA 645
+ + G D +++FWD+ +T+ + L + G+ LA
Sbjct: 300 SGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.3 bits (87), Expect = 0.004
Identities = 25/214 (11%), Positives = 51/214 (23%), Gaps = 41/214 (19%)
Query: 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 943
K H I ++ + VS D L VW + +
Sbjct: 10 GKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDN--------------------E 47
Query: 944 FNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGN 1003
D+ VH++ L D + + + LV T G+
Sbjct: 48 NPKDKSYSHFVHKSGLHHVDVLQ-----------------AIERDAFELCLVATTSFSGD 90
Query: 1004 IGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHP--LEPNQFAIGLTDGSVKV 1061
+ + + + + L A L ++ G+ +
Sbjct: 91 LLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYI 150
Query: 1062 MEPSESEGKWGVSPPVDNGILNSRTTSSSTSNHT 1095
+ + + L + T S +
Sbjct: 151 WKFHPFADESNSLTLNWSPTLELQGTVESPMTPS 184
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.9 bits (109), Expect = 8e-06
Identities = 23/159 (14%), Positives = 41/159 (25%), Gaps = 15/159 (9%)
Query: 879 EVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938
+ GH K IT L+ S L S+ A+ + W I T +
Sbjct: 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV--------- 53
Query: 939 DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 998
+A + + + + + + A + L A
Sbjct: 54 ------HATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAV 107
Query: 999 FCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYP 1037
DG+I V T + S + +
Sbjct: 108 SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSN 146
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 46.5 bits (108), Expect = 9e-06
Identities = 29/291 (9%), Positives = 77/291 (26%), Gaps = 24/291 (8%)
Query: 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRL---------------VSKPFK 386
H + + ++ + L + G I W+++ +
Sbjct: 11 HNKA-ITALSSSADGK-TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD 68
Query: 387 IWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ 446
++ ++ S VA +G+A + + +
Sbjct: 69 LFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHG 128
Query: 447 IDAHV---GAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPH 503
V + +A + + + V + + H A + S+
Sbjct: 129 KLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFS 188
Query: 504 HKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563
+ + + + + + + + + + G S D
Sbjct: 189 NNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATG-SLDNS 247
Query: 564 SFLVEWNESEGTIKRTYAGFRKKSNGV-VQFDTTQNHFLAVGEDSQIKFWD 613
+ WN ++ + + V + ++ G+DS IKFW+
Sbjct: 248 VIV--WNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 42.7 bits (98), Expect = 2e-04
Identities = 14/93 (15%), Positives = 31/93 (33%), Gaps = 2/93 (2%)
Query: 827 ISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKL-- 884
T + A DN +A G+ D+++ ++N+ +
Sbjct: 205 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIK 264
Query: 885 KGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 917
H + +VS+G D+ + W++
Sbjct: 265 GAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 297
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.2 bits (105), Expect = 3e-05
Identities = 14/178 (7%), Positives = 42/178 (23%), Gaps = 15/178 (8%)
Query: 752 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIA 811
L L + + + +P + +
Sbjct: 193 LYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSE--------- 243
Query: 812 LSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIH 871
+ + ++++ S + E +
Sbjct: 244 -AGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGE-FAAYYQGAPEKGVLL 301
Query: 872 IYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH 929
Y+V+ K+ + +T L S ++ D ++ + ++ E ++V
Sbjct: 302 KYDVK----TRKVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVETD 355
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 41.0 bits (94), Expect = 7e-04
Identities = 21/252 (8%), Positives = 60/252 (23%), Gaps = 6/252 (2%)
Query: 764 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT 823
N + + + + + IA + +
Sbjct: 96 NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDG 155
Query: 824 GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSK 883
++ + + + D+ + + S + V +
Sbjct: 156 YVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFE 215
Query: 884 LKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQ 943
+ I + S + LV ++ D + K + ++
Sbjct: 216 VVSKPFVIPLIPGSPNPTKLVPRSMTSE--AGEYDLNDMYKRSSPINVDPGDYRMIIPLE 273
Query: 944 FNADQVRMLVVHETQLAIYDASKMERIRQWTPQD----ALSAPISCAVYSCNSQLVFATF 999
+ + V E A + + ++ + + ++ S + + V
Sbjct: 274 SSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRK 333
Query: 1000 CDGNIGVFDADT 1011
DG I F +
Sbjct: 334 DDGKIYTFPLEK 345
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 40.2 bits (92), Expect = 0.001
Identities = 23/305 (7%), Positives = 63/305 (20%), Gaps = 65/305 (21%)
Query: 408 SVSRVAWSPDGNYVGVA--------------------FTKHLIQLYSYAGSNDLRQHSQI 447
+ V D + F ++L +++ + +
Sbjct: 44 RIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVA 103
Query: 448 DAHV--------------------GAVNDLAFAYPNKLLC--------VVTCGDDKLIKV 479
+ + D + ++ + + I V
Sbjct: 104 NDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHV 163
Query: 480 WELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW-----LYDTMGSRVDY 534
+++ GRK+F + Y+ + ++ + + + +
Sbjct: 164 YDMEGRKIFAATTENSHDYAPAFDADS--KNLYYLSYRSLDPSPDRVVLNFSFEVVSKPF 221
Query: 535 DAPGH--WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQ 592
P + + + R
Sbjct: 222 VIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSV 281
Query: 593 FDTTQNHFLAV--GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650
+ E + +D+ + + NL LR S + + V D
Sbjct: 282 PVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN------NLTDLRLSADRKTVMVRKDD 335
Query: 651 NGFKI 655
Sbjct: 336 GKIYT 340
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 39.1 bits (89), Expect = 0.003
Identities = 18/149 (12%), Positives = 39/149 (26%), Gaps = 17/149 (11%)
Query: 346 TVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASI---- 401
V++ F + ++ + + + + DM S P
Sbjct: 208 VVLNFSFEVVSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYR 267
Query: 402 ----FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDL 457
+ + S Y A K ++ Y ++ + DL
Sbjct: 268 MIIPLESSILIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTR-------KVTEVKNNLTDL 320
Query: 458 AFAYPNKLLCVVTCGDDKLIKVWELSGRK 486
+ K + + DD I + L +
Sbjct: 321 RLSADRKTV--MVRKDDGKIYTFPLEKPE 347
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.8 bits (105), Expect = 4e-05
Identities = 22/216 (10%), Positives = 49/216 (22%), Gaps = 9/216 (4%)
Query: 404 DVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDA---HVGAVNDLAFA 460
D +V S G Y+ V + + + ++I
Sbjct: 59 DTGYAVHISRLSASGRYLFVIGRDGKVNMIDLW-MKEPTTVAEIKIGSEARSIETSKMEG 117
Query: 461 YPNKLLCVVTCGDDKLIKVWELSGRK-LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK 519
+ +K + + + + H + + I ++ +
Sbjct: 118 WEDKYA-IAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPE 176
Query: 520 IKAWLYDTMG-SRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578
+ +T VDY + TT + + L G F+ N +
Sbjct: 177 FIVNVKETGKILLVDYTDLNNLKTTEISA--ERFLHDGGLDGSHRYFITAANARNKLVVI 234
Query: 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614
+ + T A
Sbjct: 235 DTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWA 270
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 44.4 bits (104), Expect = 7e-05
Identities = 25/168 (14%), Positives = 49/168 (29%), Gaps = 15/168 (8%)
Query: 857 DNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916
+N + I + + E+K+ L + S S L G D ++ +
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMID 89
Query: 917 IDTWEKRKSVTIHIPAGKTPTG-DTRVQFNADQVRMLVVHE--TQLAIYDASKMERIRQW 973
+ K + I G +T + + Q I D +E +
Sbjct: 90 LWM--KEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147
Query: 974 T-------PQDALSAPISCAVYSC--NSQLVFATFCDGNIGVFDADTL 1012
+ Q+ P A+ + + + G I + D L
Sbjct: 148 STRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDL 195
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Score = 40.2 bits (93), Expect = 0.001
Identities = 15/128 (11%), Positives = 38/128 (29%), Gaps = 8/128 (6%)
Query: 814 KNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873
+N V G+I+L + T+++ T + A + + D +++
Sbjct: 31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDT-GYAVHISRLSA-SGRYLFVIGRDGKVNMI 88
Query: 874 NVRVDEVK-----SKLKGHQKRITGLAFSTSLN-ILVSSGADAQLCVWSIDTWEKRKSVT 927
++ + E + T + + Q + +T E +K +
Sbjct: 89 DLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQS 148
Query: 928 IHIPAGKT 935
Sbjct: 149 TRGMTYDE 156
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Score = 39.1 bits (91), Expect = 0.002
Identities = 23/140 (16%), Positives = 40/140 (28%), Gaps = 12/140 (8%)
Query: 794 MANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAF 853
M ND V + A K ++ + + P L
Sbjct: 207 MRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVPK-NPHGLNT 265
Query: 854 HPQDNNIIAIGTEDSTIHIYNV-RVDEVKSKLKGHQKRITG----------LAFSTSLNI 902
P IA G T+ + + ++D++ + I F N
Sbjct: 266 SPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNA 325
Query: 903 LVSSGADAQLCVWSIDTWEK 922
+ D+Q+C W+I K
Sbjct: 326 YTTLFIDSQVCKWNIADAIK 345
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Score = 38.7 bits (88), Expect = 0.003
Identities = 28/267 (10%), Positives = 72/267 (26%), Gaps = 29/267 (10%)
Query: 335 RTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACS 394
V ++ GS + P + + + + ++++ + A + + + P
Sbjct: 22 NKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAV 81
Query: 395 LPFQASIFKDVPIS----------------------VSRVAWSPDGNYVGVAFTKHLIQL 432
P ++ S +A SPDG + V
Sbjct: 82 SPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVS 141
Query: 433 YSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG 492
+ + + + P+ V D I V + + +
Sbjct: 142 VINTVTKAVINTVSVGRSPKGI----AVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVK 197
Query: 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSR 552
EA I + + ++ + + + G + + DG +
Sbjct: 198 VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKK 257
Query: 553 LFSCGTSKDGDSFLVEWNESEGTIKRT 579
++ + + + + + TI T
Sbjct: 258 VYVALS---FCNTVSVIDTATNTITAT 281
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1101 | |||
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.98 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.95 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.95 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.95 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.95 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.94 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.94 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.93 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.93 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.89 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.87 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.86 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.82 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.81 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.76 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.75 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.74 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.63 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.56 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.54 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.51 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.51 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.48 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.19 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 99.17 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 99.13 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.13 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 99.12 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 99.08 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.97 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.95 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.94 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.94 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.93 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.91 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.89 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.87 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.83 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.71 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.58 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.45 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 98.32 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.26 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.98 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.93 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.77 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.71 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.71 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.7 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.69 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 97.66 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.64 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.63 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.6 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.59 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.58 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.58 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 97.58 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.57 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 97.57 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 97.54 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.49 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 97.43 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 97.37 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 97.05 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 96.93 | |
| d1uuja_ | 76 | Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-te | 96.52 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 94.84 | |
| d2nxpa1 | 149 | TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId | 94.64 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 93.2 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 93.06 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.32 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 92.2 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 92.16 | |
| d2j4ba1 | 131 | TAF5 subunit of TFIID {Encephalitozoon cuniculi [T | 92.1 | |
| d2j49a1 | 134 | TAF5 subunit of TFIID {Saccharomyces cerevisiae [T | 89.01 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 88.09 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 84.26 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 84.14 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 81.05 | |
| d1crua_ | 450 | Soluble quinoprotein glucose dehydrogenase {Acinet | 80.38 |
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.8e-36 Score=334.13 Aligned_cols=292 Identities=13% Similarity=0.191 Sum_probs=251.2
Q ss_pred ceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
+.+.+++|.+.|+||+|||+|++ ||+|+ ||.|+|||+.++..... .......+|.+.|.+++|+
T Consensus 43 ~~~~~~~H~~~V~~v~fs~~g~~-latg~-dg~V~iWd~~~~~~~~~--------------~~~~~~~~h~~~I~~v~~s 106 (337)
T d1gxra_ 43 RQINTLNHGEVVCAVTISNPTRH-VYTGG-KGCVKVWDISHPGNKSP--------------VSQLDCLNRDNYIRSCKLL 106 (337)
T ss_dssp EEEEEECCSSCCCEEEECSSSSE-EEEEC-BSEEEEEETTSTTCCSC--------------SEEEECSCTTSBEEEEEEC
T ss_pred eEEEECCCCCcEEEEEECCCCCE-EEEEE-CCEEEEEEccCCcccce--------------eEEeeecCCCCcEEEEEEc
Confidence 45677889999999999999995 68886 89999999987654321 1112356799999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
|||++||+|+.||.|++||+...... ....+.+|...|.+++|+|++. ++++++.|+.|++|| .++++.....+|.
T Consensus 107 ~dg~~l~s~~~dg~i~iwd~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~--~l~s~~~d~~i~~~~~~~~~~~~~~~~~~ 183 (337)
T d1gxra_ 107 PDGCTLIVGGEASTLSIWDLAAPTPR-IKAELTSSAPACYALAISPDSK--VCFSCCSDGNIAVWDLHNQTLVRQFQGHT 183 (337)
T ss_dssp TTSSEEEEEESSSEEEEEECCCC--E-EEEEEECSSSCEEEEEECTTSS--EEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred CCCCEEEEeecccccccccccccccc-cccccccccccccccccccccc--ccccccccccccccccccccccccccccc
Confidence 99999999999999999999765432 2236778999999999999999 899999999999999 8888888999999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG 574 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~ 574 (1101)
..|.+++|++ ++..+++++.|+.|++||+++++....+. +...|.+++|+|+++++++++. ++.+++||+.++
T Consensus 184 ~~v~~l~~s~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~-~~~~i~~l~~~~~~~~l~~~~~----d~~i~i~d~~~~ 256 (337)
T d1gxra_ 184 DGASCIDISN--DGTKLWTGGLDNTVRSWDLREGRQLQQHD-FTSQIFSLGYCPTGEWLAVGME----SSNVEVLHVNKP 256 (337)
T ss_dssp SCEEEEEECT--TSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEECTTSSEEEEEET----TSCEEEEETTSS
T ss_pred cccccccccc--cccccccccccccccccccccceeecccc-cccceEEEEEcccccccceecc----cccccccccccc
Confidence 9999999977 56899999999999999999887766554 5668999999999999999885 889999999988
Q ss_pred eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 575 TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 575 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
+... ...|.. .+..++|+|++++|++++.||.|++||..+++.+..+.. ...|.+++|+|++++|++|+.||+|+
T Consensus 257 ~~~~-~~~~~~-~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~---~~~v~~~~~s~d~~~l~t~s~D~~I~ 331 (337)
T d1gxra_ 257 DKYQ-LHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE---SSSVLSCDISVDDKYIVTGSGDKKAT 331 (337)
T ss_dssp CEEE-ECCCSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC---SSCEEEEEECTTSCEEEEEETTSCEE
T ss_pred cccc-cccccc-ccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccC---CCCEEEEEEeCCCCEEEEEeCCCeEE
Confidence 8754 445555 799999999999999999999999999999998887754 34799999999999999999999999
Q ss_pred EEEc
Q 001319 655 ILAN 658 (1101)
Q Consensus 655 iwd~ 658 (1101)
+||+
T Consensus 332 vWdl 335 (337)
T d1gxra_ 332 VYEV 335 (337)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 9996
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.9e-35 Score=321.10 Aligned_cols=285 Identities=21% Similarity=0.366 Sum_probs=260.1
Q ss_pred EeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 339 VSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 339 ~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
.+-+|.+.|++|+|+|+++ +||||+.||+|+|||+.+++.+. .+.+|...|.+++|+|++
T Consensus 12 ~L~GH~~~I~~l~~sp~~~-~l~s~s~Dg~i~iWd~~~~~~~~-------------------~~~~h~~~V~~~~~~~~~ 71 (317)
T d1vyhc1 12 ALSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETGDFER-------------------TLKGHTDSVQDISFDHSG 71 (317)
T ss_dssp EEECCSSCEEEEEECSSSS-EEEEEESSSCEEEEETTTCCCCE-------------------EECCCSSCEEEEEECTTS
T ss_pred EEcCCCCCeEEEEEcCCCC-EEEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCcEEEEeeeccc
Confidence 3457999999999999998 56899999999999999987665 378899999999999999
Q ss_pred CEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCe
Q 001319 419 NYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPV 497 (1101)
Q Consensus 419 ~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v 497 (1101)
.++++++.++.+.+|+....+... .+.+|...+.++.|++++. .+++++.|+.+++|| .+++.+..+.+|...+
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 146 (317)
T d1vyhc1 72 KLLASCSADMTIKLWDFQGFECIR---TMHGHDHNVSSVSIMPNGD--HIVSASRDKTIKMWEVQTGYCVKTFTGHREWV 146 (317)
T ss_dssp SEEEEEETTSCCCEEETTSSCEEE---CCCCCSSCEEEEEECSSSS--EEEEEETTSEEEEEETTTCCEEEEEECCSSCE
T ss_pred cccccccccccccccccccccccc---ccccccccceeeeccCCCc--eEEeeccCcceeEeecccceeeeEEccCCCcc
Confidence 999999999999999998876554 5678999999999999999 799999999999999 8899999999999999
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCC--------------------CEEEEee
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADG--------------------SRLFSCG 557 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~--------------------~~l~~~~ 557 (1101)
.+++|++ ++.+|++++.|+.|++|++.+......+..+...+.++.++|++ ..+++++
T Consensus 147 ~~~~~~~--~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (317)
T d1vyhc1 147 RMVRPNQ--DGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGS 224 (317)
T ss_dssp EEEEECT--TSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEE
T ss_pred eeeeccc--CCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEecc
Confidence 9999977 66899999999999999999999999998898899999998764 3577776
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
. ++.|++||..+++++..+.+|.. .+..++++|++++|++++.||.|++||+.+++.+..+..|.. .|++++|
T Consensus 225 ~----d~~i~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~--~V~~~~~ 297 (317)
T d1vyhc1 225 R----DKTIKMWDVSTGMCLMTLVGHDN-WVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH--FVTSLDF 297 (317)
T ss_dssp T----TSEEEEEETTTTEEEEEEECCSS-CEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS--CEEEEEE
T ss_pred C----CCEEEEEECCCCcEEEEEeCCCC-CEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCC--CEEEEEE
Confidence 4 88999999999999999999887 899999999999999999999999999999999999887644 8999999
Q ss_pred ecCCCEEEEEEcCCcEEEEE
Q 001319 638 SKEGNLLAVTTADNGFKILA 657 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd 657 (1101)
+|++++|++|+.||+|++||
T Consensus 298 s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 298 HKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp CSSSSCEEEEETTSEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEeC
Confidence 99999999999999999996
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=4.4e-35 Score=317.61 Aligned_cols=286 Identities=14% Similarity=0.218 Sum_probs=244.4
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+.+.+.+++++|+|+.+ |.+ .++.|.+||+.++.... ++.+|...|++++|+|||++||
T Consensus 16 ~r~~~~~~a~~~~g~~l-~~~-~~~~v~i~~~~~~~~~~-------------------~~~~H~~~v~~~~~sp~g~~la 74 (311)
T d1nr0a1 16 ARGTAVVLGNTPAGDKI-QYC-NGTSVYTVPVGSLTDTE-------------------IYTEHSHQTTVAKTSPSGYYCA 74 (311)
T ss_dssp CTTCCCCCEECTTSSEE-EEE-ETTEEEEEETTCSSCCE-------------------EECCCSSCEEEEEECTTSSEEE
T ss_pred CCCCeEEEEEcCCCCEE-EEE-eCCEEEEEECCCCceeE-------------------EEcCCCCCEEEEEEeCCCCeEe
Confidence 44567789999999965 555 46689999998876543 4788999999999999999999
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC--CceEEEEE-cCCceeEEeecCCcCeEE
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD--DKLIKVWE-LSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~--d~~v~iwd-~~~~~~~~~~~h~~~v~~ 499 (1101)
+|+.||+|+|||+.+++.... ..+.+|.++|.+++|+|+++ ++++++. ++.++||+ .+++....+.+|...|.+
T Consensus 75 tg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~v~~v~~s~d~~--~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~ 151 (311)
T d1nr0a1 75 SGDVHGNVRIWDTTQTTHILK-TTIPVFSGPVKDISWDSESK--RIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNS 151 (311)
T ss_dssp EEETTSEEEEEESSSTTCCEE-EEEECSSSCEEEEEECTTSC--EEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEE
T ss_pred ccccCceEeeeeeeccccccc-cccccccCcccccccccccc--cccccccccccccccccccccccccccccccccccc
Confidence 999999999999998875532 25788999999999999999 6777764 56799999 888889999999999999
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1101)
++|+|+.+ ..+++|+.|+.|++||+++.+....+..+...|.++.++|+++++++++. ++.|++||..++.....
T Consensus 152 v~~~~~~~-~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~----d~~v~~~d~~~~~~~~~ 226 (311)
T d1nr0a1 152 VDFKPSRP-FRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGG----DGTIVLYNGVDGTKTGV 226 (311)
T ss_dssp EEECSSSS-CEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETTTCCEEEE
T ss_pred ccccccce-eeecccccccccccccccccccccccccccccccccccCccccccccccc----ccccccccccccccccc
Confidence 99987532 35889999999999999999999999999999999999999999999985 89999999999988877
Q ss_pred ecc-------cCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc
Q 001319 580 YAG-------FRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG 652 (1101)
Q Consensus 580 ~~~-------~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~ 652 (1101)
+.. |.. .|.+++|+|++++|++|+.||.|+|||+++++++..+..+... ....+.+.+++..|++++.||.
T Consensus 227 ~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~-~~~~~~~~~~~~~l~s~s~dG~ 304 (311)
T d1nr0a1 227 FEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI-EDQQLGIIWTKQALVSISANGF 304 (311)
T ss_dssp CBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSG-GGCEEEEEECSSCEEEEETTCC
T ss_pred ccccccccccccc-cccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCc-cceEEEEEecCCEEEEEECCCE
Confidence 653 333 7899999999999999999999999999999999988765432 2344566667778999999999
Q ss_pred EEEEEcc
Q 001319 653 FKILANA 659 (1101)
Q Consensus 653 i~iwd~~ 659 (1101)
|++||.+
T Consensus 305 i~~wd~d 311 (311)
T d1nr0a1 305 INFVNPE 311 (311)
T ss_dssp EEEEETT
T ss_pred EEEEeCC
Confidence 9999964
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=2.6e-35 Score=321.59 Aligned_cols=315 Identities=17% Similarity=0.292 Sum_probs=267.0
Q ss_pred EEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeec
Q 001319 479 VWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 479 iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
.|........++.||.++|++++|+| ++++|++|+.||+|++||+.+++....+..|...|.+++++|++.+++++..
T Consensus 2 ~w~p~~~~~~~L~GH~~~I~~l~~sp--~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 2 EWIPRPPEKYALSGHRSPVTRVIFHP--VFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp CCCCCSSCSCEEECCSSCEEEEEECS--SSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred ccCCCCCccEEEcCCCCCeEEEEEcC--CCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeeccccccccccc
Confidence 35544455678999999999999987 5689999999999999999999999999999999999999999999999885
Q ss_pred CCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEe
Q 001319 559 SKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFS 638 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s 638 (1101)
++.+..|+....+....+.++.. .+..+.++++++.+++++.|+.+++||+.+++.+..+..+.. .+.+++|+
T Consensus 80 ----~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 152 (317)
T d1vyhc1 80 ----DMTIKLWDFQGFECIRTMHGHDH-NVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE--WVRMVRPN 152 (317)
T ss_dssp ----TSCCCEEETTSSCEEECCCCCSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEEEEC
T ss_pred ----ccccccccccccccccccccccc-cceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCC--cceeeecc
Confidence 77889999999888888888776 788899999999999999999999999999999888876644 78999999
Q ss_pred cCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEE
Q 001319 639 KEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAE 718 (1101)
Q Consensus 639 ~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~ 718 (1101)
|++.+|++++.|+.|++|+..++ .....+
T Consensus 153 ~~~~~l~~~~~d~~v~~~~~~~~-~~~~~~-------------------------------------------------- 181 (317)
T d1vyhc1 153 QDGTLIASCSNDQTVRVWVVATK-ECKAEL-------------------------------------------------- 181 (317)
T ss_dssp TTSSEEEEEETTSCEEEEETTTC-CEEEEE--------------------------------------------------
T ss_pred cCCCEEEEEeCCCeEEEEeeccc-eeeEEE--------------------------------------------------
Confidence 99999999999999999998766 222221
Q ss_pred EEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeecc
Q 001319 719 IVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDV 798 (1101)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 798 (1101)
..+...+..+.+++++.........
T Consensus 182 ---------------~~~~~~i~~~~~~~~~~~~~~~~~~---------------------------------------- 206 (317)
T d1vyhc1 182 ---------------REHRHVVECISWAPESSYSSISEAT---------------------------------------- 206 (317)
T ss_dssp ---------------CCCSSCEEEEEECCSCGGGGGGGCC----------------------------------------
T ss_pred ---------------ecCCCCceEEEEeeccccceeeccc----------------------------------------
Confidence 1255566777777766533322211
Q ss_pred CCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeec
Q 001319 799 AGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRV 877 (1101)
Q Consensus 799 ~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~ 877 (1101)
.........++.++++++ |+.|++||+.+++++..+.+|...|.+++|+| ++++|++|+.||.|+|||+.+
T Consensus 207 -------~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~dg~i~iwd~~~ 278 (317)
T d1vyhc1 207 -------GSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHS-GGKFILSCADDKTLRVWDYKN 278 (317)
T ss_dssp -------SCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECS-SSSCEEEEETTTEEEEECCTT
T ss_pred -------cceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECC-CCCEEEEEECCCeEEEEECCC
Confidence 111223344677888887 89999999999999999999999999999999 899999999999999999999
Q ss_pred ceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEE
Q 001319 878 DEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWS 916 (1101)
Q Consensus 878 ~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd 916 (1101)
++++..+.+|.+.|++++|+|++++|++|+.||+|++||
T Consensus 279 ~~~~~~~~~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 279 KRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SCCCEEEECCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 999999999999999999999999999999999999997
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=2.7e-34 Score=316.65 Aligned_cols=283 Identities=13% Similarity=0.190 Sum_probs=241.8
Q ss_pred CCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC
Q 001319 735 DTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK 814 (1101)
Q Consensus 735 ~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~ 814 (1101)
.|...|.+++|+|+|++|++++ ||.|++||+....... ....... .+|...|.+++|+|
T Consensus 49 ~H~~~V~~v~fs~~g~~latg~-dg~V~iWd~~~~~~~~------------------~~~~~~~--~~h~~~I~~v~~s~ 107 (337)
T d1gxra_ 49 NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKS------------------PVSQLDC--LNRDNYIRSCKLLP 107 (337)
T ss_dssp CCSSCCCEEEECSSSSEEEEEC-BSEEEEEETTSTTCCS------------------CSEEEEC--SCTTSBEEEEEECT
T ss_pred CCCCcEEEEEECCCCCEEEEEE-CCEEEEEEccCCcccc------------------eeEEeee--cCCCCcEEEEEEcC
Confidence 3889999999999999999876 8999999986432110 0111111 24889999999999
Q ss_pred CCCeEEEEc-CCeEEEEECCC--ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCe
Q 001319 815 NDSYVMSAT-GGKISLFNMMT--FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRI 891 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~--~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V 891 (1101)
||++|++++ ||.|++||+.. ++....+..|...+.+++|+| ++.++++++.|+.|++|++.++++.....+|...|
T Consensus 108 dg~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v 186 (337)
T d1gxra_ 108 DGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISP-DSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGA 186 (337)
T ss_dssp TSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECT-TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCE
T ss_pred CCCEEEEeeccccccccccccccccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc
Confidence 999999997 89999999874 456777888999999999999 89999999999999999999999999999999999
Q ss_pred eEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceee
Q 001319 892 TGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERI 970 (1101)
Q Consensus 892 ~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~ 970 (1101)
.+++|++++..+++++.|+.|++||+.+++....... ...+.+++|+|++.+++++ .|+.+++||+.+++..
T Consensus 187 ~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-------~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 259 (337)
T d1gxra_ 187 SCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF-------TSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKY 259 (337)
T ss_dssp EEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-------SSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEE
T ss_pred ccccccccccccccccccccccccccccceeeccccc-------ccceEEEEEcccccccceeccccccccccccccccc
Confidence 9999999999999999999999999998775443321 1678999999999999985 4899999999988875
Q ss_pred eEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEE
Q 001319 971 RQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQF 1050 (1101)
Q Consensus 971 ~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l 1050 (1101)
... .|...|++++|+|+|++|++|+.||.|++||+.+++.+..+. |.. .+.+++|+| ++.+|
T Consensus 260 ~~~----~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~-----------~~~--~v~~~~~s~-d~~~l 321 (337)
T d1gxra_ 260 QLH----LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK-----------ESS--SVLSCDISV-DDKYI 321 (337)
T ss_dssp EEC----CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEE-----------CSS--CEEEEEECT-TSCEE
T ss_pred ccc----ccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEcc-----------CCC--CEEEEEEeC-CCCEE
Confidence 432 348899999999999999999999999999999999887765 554 456899999 69999
Q ss_pred EEEECCCeEEEEeC
Q 001319 1051 AIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1051 ~s~~~Dg~v~iWd~ 1064 (1101)
++|+.||+|+|||+
T Consensus 322 ~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 322 VTGSGDKKATVYEV 335 (337)
T ss_dssp EEEETTSCEEEEEE
T ss_pred EEEeCCCeEEEEEE
Confidence 99999999999996
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2e-34 Score=325.28 Aligned_cols=307 Identities=16% Similarity=0.254 Sum_probs=240.7
Q ss_pred ceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 336 TVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 336 ~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
.+...++|++.|+||+|||||+ +||+|+ |+.|+|||+.+++.+......... .............+|...|.+++|+
T Consensus 54 ~l~~~~~H~~~V~~l~fs~dg~-~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~V~~l~~s 130 (388)
T d1erja_ 54 ELHKSLDHTSVVCCVKFSNDGE-YLATGC-NKTTQVYRVSDGSLVARLSDDSAA-NKDPENLNTSSSPSSDLYIRSVCFS 130 (388)
T ss_dssp EEEEEEECSSCCCEEEECTTSS-EEEEEC-BSCEEEEETTTCCEEEEECC------------------CCCCBEEEEEEC
T ss_pred eeEeeCCCCCcEEEEEECCCCC-EEEEEe-CCeEEEEEecccceEeeecccccc-cccccccccccccCCCCCEEEEEEC
Confidence 3456678999999999999998 568886 899999999998876531110000 0000111122356788999999999
Q ss_pred cCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 416 PDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 416 pdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
|||++|++|+.||.|++||...++.+. .+.+|...|.+++|++++. .+++++.++.+++|| .+.........+.
T Consensus 131 ~~~~~l~s~~~dg~v~i~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~--~~~~~~~~~~i~~~d~~~~~~~~~~~~~~ 205 (388)
T d1erja_ 131 PDGKFLATGAEDRLIRIWDIENRKIVM---ILQGHEQDIYSLDYFPSGD--KLVSGSGDRTVRIWDLRTGQCSLTLSIED 205 (388)
T ss_dssp TTSSEEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEECTTSS--EEEEEETTSEEEEEETTTTEEEEEEECSS
T ss_pred CCCCcceeccccccccccccccccccc---ccccccccccccccccccc--cccccccceeeeeeecccccccccccccc
Confidence 999999999999999999999987666 6779999999999999999 799999999999999 6666666665554
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec-------cCCCCceEEEEEccCCCEEEEeecCCCCCceEE
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY-------DAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLV 567 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~-------~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~ 567 (1101)
. ...+.+.+. ++.+|++++.|+.|++|+..+......+ ..|...|.+++|+|++++|++++. ++.|+
T Consensus 206 ~-~~~~~~~~~-~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~----d~~i~ 279 (388)
T d1erja_ 206 G-VTTVAVSPG-DGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSL----DRSVK 279 (388)
T ss_dssp C-EEEEEECST-TCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEET----TSEEE
T ss_pred c-cccccccCC-CCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEEC----CCcEE
Confidence 4 455555443 6689999999999999999987766543 345678999999999999999986 89999
Q ss_pred EEeCCCCee------------EEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCee
Q 001319 568 EWNESEGTI------------KRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRL 635 (1101)
Q Consensus 568 iwd~~~~~~------------~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v 635 (1101)
+||+.++.. ......|.. .+.+++|+|++++|++|+.||.|++||+.+++++..+..|.. .|.++
T Consensus 280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~--~V~~~ 356 (388)
T d1erja_ 280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKD-FVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN--SVISV 356 (388)
T ss_dssp EEEC---------------CEEEEEECCSS-CEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS--CEEEE
T ss_pred EEeccCCccccccccccccceeeecccccc-eEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeCCCC--CEEEE
Confidence 999876543 333444444 789999999999999999999999999999999999987654 67777
Q ss_pred E------EecCCCEEEEEEcCCcEEEEEcc
Q 001319 636 R------FSKEGNLLAVTTADNGFKILANA 659 (1101)
Q Consensus 636 ~------~s~~g~~l~~~~~d~~i~iwd~~ 659 (1101)
+ |+|++.+|++|+.||+|++|+++
T Consensus 357 ~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 357 AVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred EEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 5 57799999999999999999975
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.7e-34 Score=308.20 Aligned_cols=289 Identities=13% Similarity=0.134 Sum_probs=235.2
Q ss_pred ceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccc
Q 001319 587 SNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR 666 (1101)
Q Consensus 587 ~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~ 666 (1101)
....++++|+|+.|+.++ ++.+.+||+.++.....+..|. ..|.+++|+|+|++|++|+.||+|++||+.+......
T Consensus 19 ~~~~~a~~~~g~~l~~~~-~~~v~i~~~~~~~~~~~~~~H~--~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~ 95 (311)
T d1nr0a1 19 TAVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHS--HQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILK 95 (311)
T ss_dssp CCCCCEECTTSSEEEEEE-TTEEEEEETTCSSCCEEECCCS--SCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEE
T ss_pred CeEEEEEcCCCCEEEEEe-CCEEEEEECCCCceeEEEcCCC--CCEEEEEEeCCCCeEeccccCceEeeeeeeccccccc
Confidence 445689999999998875 5679999999998888887654 4899999999999999999999999999875511000
Q ss_pred cccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEee
Q 001319 667 AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYT 746 (1101)
Q Consensus 667 ~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s 746 (1101)
.
T Consensus 96 ~------------------------------------------------------------------------------- 96 (311)
T d1nr0a1 96 T------------------------------------------------------------------------------- 96 (311)
T ss_dssp E-------------------------------------------------------------------------------
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred cCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcC--
Q 001319 747 NSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATG-- 824 (1101)
Q Consensus 747 ~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~d-- 824 (1101)
. +. .|...|.+++|+|++++++++++
T Consensus 97 ------------------~--------------------------------~~--~~~~~v~~v~~s~d~~~l~~~~~~~ 124 (311)
T d1nr0a1 97 ------------------T--------------------------------IP--VFSGPVKDISWDSESKRIAAVGEGR 124 (311)
T ss_dssp ------------------E--------------------------------EE--CSSSCEEEEEECTTSCEEEEEECCS
T ss_pred ------------------c--------------------------------cc--cccCccccccccccccccccccccc
Confidence 0 00 26778999999999999988863
Q ss_pred -CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC-EEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCE
Q 001319 825 -GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN-IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNI 902 (1101)
Q Consensus 825 -g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~-~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~ 902 (1101)
..+++|++++++....+.+|...|++++|+| +++ +|++|+.||.|++||+.+++....+.+|..+|++++|+|++++
T Consensus 125 ~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~-~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~ 203 (311)
T d1nr0a1 125 ERFGHVFLFDTGTSNGNLTGQARAMNSVDFKP-SRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203 (311)
T ss_dssp SCSEEEEETTTCCBCBCCCCCSSCEEEEEECS-SSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSE
T ss_pred cccccccccccccccccccccccccccccccc-cceeeecccccccccccccccccccccccccccccccccccCccccc
Confidence 4599999999999999999999999999999 555 5889999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCC
Q 001319 903 LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAP 982 (1101)
Q Consensus 903 l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~ 982 (1101)
|++++.|+.|++||+.+++...... ... ....+|...
T Consensus 204 l~~~~~d~~v~~~d~~~~~~~~~~~------------------------------------~~~-------~~~~~h~~~ 240 (311)
T d1nr0a1 204 FASTGGDGTIVLYNGVDGTKTGVFE------------------------------------DDS-------LKNVAHSGS 240 (311)
T ss_dssp EEEEETTSCEEEEETTTCCEEEECB------------------------------------CTT-------SSSCSSSSC
T ss_pred ccccccccccccccccccccccccc------------------------------------ccc-------ccccccccc
Confidence 9999999999999998855322110 000 011245889
Q ss_pred EEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEE
Q 001319 983 ISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVM 1062 (1101)
Q Consensus 983 v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iW 1062 (1101)
|++++|+|+|++|++|+.||.|+|||+.+++++..+..+. .....++++.|+ +..|++++.||.|++|
T Consensus 241 V~~~~~s~~~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~---------~~~~~~~~~~~~---~~~l~s~s~dG~i~~w 308 (311)
T d1nr0a1 241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGT---------RIEDQQLGIIWT---KQALVSISANGFINFV 308 (311)
T ss_dssp EEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCS---------SGGGCEEEEEEC---SSCEEEEETTCCEEEE
T ss_pred ccccccCCCCCEEEEEeCCCeEEEEECCCCcEEEEEECCC---------CccceEEEEEec---CCEEEEEECCCEEEEE
Confidence 9999999999999999999999999999999988876311 112333455554 4579999999999999
Q ss_pred eCC
Q 001319 1063 EPS 1065 (1101)
Q Consensus 1063 d~~ 1065 (1101)
|++
T Consensus 309 d~d 311 (311)
T d1nr0a1 309 NPE 311 (311)
T ss_dssp ETT
T ss_pred eCC
Confidence 974
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.5e-33 Score=316.17 Aligned_cols=324 Identities=15% Similarity=0.208 Sum_probs=254.6
Q ss_pred EEEECCCeEEEEeecCCccccc-ceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee--------
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQ-HSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-------- 491 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~-~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~-------- 491 (1101)
+.+..++.+.+|+....+.+.. +....+|.+.|++++|+|||+ +|++|+ |++|+||| .+++.+..+.
T Consensus 32 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs~dg~--~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~ 108 (388)
T d1erja_ 32 LKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGE--YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKD 108 (388)
T ss_dssp SEEECSSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEECTTSS--EEEEEC-BSCEEEEETTTCCEEEEECC-------
T ss_pred cccCCCCcEEEeCCCCCcceeeeeEeeCCCCCcEEEEEECCCCC--EEEEEe-CCeEEEEEecccceEeeeccccccccc
Confidence 3566778899999876654321 123347999999999999999 789987 89999999 8888776654
Q ss_pred ----------cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 492 ----------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 492 ----------~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
+|...|.+++|++ ++++|++|+.||.|++||....+.......|...|.++.+++++..+++++.
T Consensus 109 ~~~~~~~~~~~~~~~V~~l~~s~--~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~--- 183 (388)
T d1erja_ 109 PENLNTSSSPSSDLYIRSVCFSP--DGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG--- 183 (388)
T ss_dssp ----------CCCCBEEEEEECT--TSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET---
T ss_pred ccccccccccCCCCCEEEEEECC--CCCcceeccccccccccccccccccccccccccccccccccccccccccccc---
Confidence 4566799999987 6789999999999999999999999999999999999999999999999885
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccC-----CCCCCCCeeE
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAE-----GGLPNLPRLR 636 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~-----~~~~~v~~v~ 636 (1101)
++.+++||..+.........+.. .+....+.+++++|++++.||.|++|+..++.....+... ++...|.+++
T Consensus 184 -~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~ 261 (388)
T d1erja_ 184 -DRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVV 261 (388)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEE
T ss_pred -ceeeeeeeccccccccccccccc-cccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEE
Confidence 88999999999988887776654 4444445558899999999999999999988877665322 2234567777
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
|+|++++|++++.|+.|++||+.+...... .
T Consensus 262 ~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~-~------------------------------------------------ 292 (388)
T d1erja_ 262 FTRDGQSVVSGSLDRSVKLWNLQNANNKSD-S------------------------------------------------ 292 (388)
T ss_dssp ECTTSSEEEEEETTSEEEEEEC----------------------------------------------------------
T ss_pred ECCCCCEEEEEECCCcEEEEeccCCccccc-c------------------------------------------------
Confidence 777777777777777777777654310000 0
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
T Consensus 293 -------------------------------------------------------------------------------- 292 (388)
T d1erja_ 293 -------------------------------------------------------------------------------- 292 (388)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEee
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVR 876 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~ 876 (1101)
. ....+........|...|.+++|+| ++++|++|+.||.|++||+.
T Consensus 293 --------------~-------------------~~~~~~~~~~~~~~~~~v~~~~~s~-~~~~l~sg~~dg~i~vwd~~ 338 (388)
T d1erja_ 293 --------------K-------------------TPNSGTCEVTYIGHKDFVLSVATTQ-NDEYILSGSKDRGVLFWDKK 338 (388)
T ss_dssp ---------------------------------------CEEEEEECCSSCEEEEEECG-GGCEEEEEETTSEEEEEETT
T ss_pred --------------c-------------------cccccceeeecccccceEEEEEECC-CCCEEEEEeCCCEEEEEECC
Confidence 0 0001122333445778899999999 89999999999999999999
Q ss_pred cceEEEeeccCCCCeeEEEE------cCCCCEEEEEeCCCcEEEEECC
Q 001319 877 VDEVKSKLKGHQKRITGLAF------STSLNILVSSGADAQLCVWSID 918 (1101)
Q Consensus 877 ~~~~~~~~~~h~~~V~~l~~------s~d~~~l~s~s~Dg~v~lwd~~ 918 (1101)
+++++..+.+|.+.|+++++ +|++++||||+.||+|++|+++
T Consensus 339 ~~~~~~~l~~H~~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 339 SGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp TCCEEEEEECCSSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCcEEEEEeCCCCCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999999999999999975 5789999999999999999984
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-33 Score=312.73 Aligned_cols=342 Identities=18% Similarity=0.281 Sum_probs=247.5
Q ss_pred cccccCCccE-EEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 400 SIFKDVPISV-SRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 400 ~~~~~h~~~v-~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
.+|+||...| +|++ +||++||+|+.||+|+|||+.+++.+. ++.+|.++|++++|+|++ +|++|+.|++|+
T Consensus 6 ~tL~GH~~~vitc~~--~~~~~l~tgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~l~~s~~~---~l~s~s~D~~i~ 77 (355)
T d1nexb2 6 TTLRGHMTSVITCLQ--FEDNYVITGADDKMIRVYDSINKKFLL---QLSGHDGGVWALKYAHGG---ILVSGSTDRTVR 77 (355)
T ss_dssp EEEECCSSSCEEEEE--EETTEEEEEETTTEEEEEETTTTEEEE---EEECCSSCEEEEEEETTT---EEEEEETTCCEE
T ss_pred EEECCcCCCcEEEEE--ECCCEEEEEeCCCeEEEEECCCCcEEE---EEECCCCCEEEEEEcCCC---EEEEEecccccc
Confidence 3589998876 5554 578999999999999999999988776 788999999999999864 699999999999
Q ss_pred EEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEee
Q 001319 479 VWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 479 iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
+|+ ..++.......+............+++..+++++.|+.|++||+.+............. ......+..
T Consensus 78 iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~------- 149 (355)
T d1nexb2 78 VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDY-PLVFHTPEE------- 149 (355)
T ss_dssp EEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CC-CEEESCTTT-------
T ss_pred cccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceecccccccee-ccceecccc-------
Confidence 999 77777666655555444444334457789999999999999998776544332211111 111111111
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
..........+. .....+.++++.++++..|+.|++||+.+++.+........ .+.++.|
T Consensus 150 ---------------~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~ 209 (355)
T d1nexb2 150 ---------------NPYFVGVLRGHM---ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTD--RIYSTIY 209 (355)
T ss_dssp ---------------CTTEEEEEECCS---SCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSS--CEEEEEE
T ss_pred ---------------ccceeeeeeecc---ccccccccccceeeeecccceeeeeecccccceeeeecccc--ccccccc
Confidence 111112222222 22245667789999999999999999999998887765543 6889999
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
+|++..+++++.|+.|++|+..++. ....+
T Consensus 210 ~~~~~~~~~~~~d~~i~i~d~~~~~-~~~~~------------------------------------------------- 239 (355)
T d1nexb2 210 DHERKRCISASMDTTIRIWDLENGE-LMYTL------------------------------------------------- 239 (355)
T ss_dssp ETTTTEEEEEETTSCEEEEETTTCC-EEEEE-------------------------------------------------
T ss_pred cccceeeecccccceEEeeeccccc-ccccc-------------------------------------------------
Confidence 9999999999999999999987551 11000
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeec
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAND 797 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 797 (1101)
T Consensus 240 -------------------------------------------------------------------------------- 239 (355)
T d1nexb2 240 -------------------------------------------------------------------------------- 239 (355)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEE-EEecCCCCEEEEEeCCCcEEEEEe
Q 001319 798 VAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFL-AFHPQDNNIIAIGTEDSTIHIYNV 875 (1101)
Q Consensus 798 ~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l-~~s~~~~~~la~g~~dg~v~iwd~ 875 (1101)
. +|...|.+++++ ++++++++ ||.|++||+.++.... ..|...+.++ ++++ ++.+|++|+ ||+|+|||+
T Consensus 240 -~--~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~g~-d~~i~vwd~ 310 (355)
T d1nexb2 240 -Q--GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--SYHHTNLSAITTFYV-SDNILVSGS-ENQFNIYNL 310 (355)
T ss_dssp -C--CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--EEECTTCCCCCEEEE-CSSEEEEEE-TTEEEEEET
T ss_pred -c--cccccccccccc--cceeeeeecccccccccccccceec--ccccCCceEEEEEcC-CCCEEEEEe-CCEEEEEEC
Confidence 0 166667778775 46788877 8999999998776543 3455555555 4566 778777665 899999999
Q ss_pred ecceEEE-eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEEC
Q 001319 876 RVDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSI 917 (1101)
Q Consensus 876 ~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~ 917 (1101)
.+++++. .+.+|.++|.+++|+|+ ..+++++.||+++||.+
T Consensus 311 ~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 311 RSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp TTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred CCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 9999875 56889999999999987 57888999999776643
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-32 Score=303.19 Aligned_cols=291 Identities=18% Similarity=0.264 Sum_probs=251.6
Q ss_pred ceeEee-cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 336 TVAVSL-HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 336 ~~~~~~-~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
...++| ||.+.|++++|+|+++ +||+|+.||+|+|||+.+++.+. .+.+|...|.+++|
T Consensus 46 ~~~~tL~GH~~~I~~l~~s~~~~-~l~sgs~Dg~v~iWd~~~~~~~~-------------------~~~~~~~~v~~v~~ 105 (340)
T d1tbga_ 46 RTRRTLRGHLAKIYAMHWGTDSR-LLVSASQDGKLIIWDSYTTNKVH-------------------AIPLRSSWVMTCAY 105 (340)
T ss_dssp CEEEEECCCSSCEEEEEECTTSS-EEEEEETTTEEEEEETTTTEEEE-------------------EEECSCSCEEEEEE
T ss_pred eeeEEECCCCCCEEEEEECCCCC-EEEEEECCCceeeeecccceeEE-------------------EEecccccEEeeEe
Confidence 344555 5999999999999998 56999999999999999988765 37789999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccc-cceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeec
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLR-QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEG 492 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~-~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~ 492 (1101)
+|+++++++|+.|+.|++|+........ ....+.+|...........+. .+..+..|.....|+ ...........
T Consensus 106 ~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (340)
T d1tbga_ 106 APSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDN---QIVTSSGDTTCALWDIETGQQTTTFTG 182 (340)
T ss_dssp CTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEEEEEEEETT---EEEEEETTTEEEEEETTTTEEEEEEEC
T ss_pred eccceeeeeecccceeecccccccccccccceeccccccccccccccccc---ccccccccccccccccccccccccccc
Confidence 9999999999999999999987654432 233567888877777776655 477788899999999 66667777777
Q ss_pred CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC
Q 001319 493 HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 493 h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
+...+....+.+ .+.++++++.|+.|++||+++......+..|...|++++|+|+++++++++. ++.|++||+.
T Consensus 183 ~~~~~~~~~~~~--~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~----d~~i~~~~~~ 256 (340)
T d1tbga_ 183 HTGDVMSLSLAP--DTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSD----DATCRLFDLR 256 (340)
T ss_dssp CSSCEEEEEECT--TSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEET----TSCEEEEETT
T ss_pred cceeEeeecccc--ccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeC----CCeEEEEeec
Confidence 888888888866 5579999999999999999999999999999999999999999999999985 8999999999
Q ss_pred CCeeEEEecccC-CcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCC
Q 001319 573 EGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADN 651 (1101)
Q Consensus 573 ~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~ 651 (1101)
.......+.... ...+..++|+|++++|++|+.||.|++||+.+++.+..+..|.. .|.+++|+|++++|++|+.||
T Consensus 257 ~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~--~V~~l~~s~d~~~l~s~s~Dg 334 (340)
T d1tbga_ 257 ADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDN--RVSCLGVTDDGMAVATGSWDS 334 (340)
T ss_dssp TTEEEEEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSS--CEEEEEECTTSSCEEEEETTS
T ss_pred ccccccccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCC--CEEEEEEeCCCCEEEEEccCC
Confidence 998887764332 33688999999999999999999999999999999999887644 899999999999999999999
Q ss_pred cEEEEE
Q 001319 652 GFKILA 657 (1101)
Q Consensus 652 ~i~iwd 657 (1101)
.|++||
T Consensus 335 ~v~iWd 340 (340)
T d1tbga_ 335 FLKIWN 340 (340)
T ss_dssp CEEEEC
T ss_pred EEEEeC
Confidence 999997
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.5e-33 Score=315.09 Aligned_cols=291 Identities=16% Similarity=0.121 Sum_probs=232.3
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
.++|+|++|||||+ +||+|+.||.|+|||+.+++... ...+.+|.++|.+++|+|++++||+
T Consensus 7 ~~pIt~~~~s~dg~-~la~~~~~~~i~iw~~~~~~~~~-----------------~~~l~gH~~~V~~l~fsp~~~~l~s 68 (371)
T d1k8kc_ 7 VEPISCHAWNKDRT-QIAICPNNHEVHIYEKSGNKWVQ-----------------VHELKEHNGQVTGVDWAPDSNRIVT 68 (371)
T ss_dssp SSCCCEEEECTTSS-EEEEECSSSEEEEEEEETTEEEE-----------------EEEEECCSSCEEEEEEETTTTEEEE
T ss_pred CCCeEEEEECCCCC-EEEEEeCCCEEEEEECCCCCEEE-----------------EEEecCCCCCEEEEEECCCCCEEEE
Confidence 46899999999998 56899999999999998765432 1247899999999999999999999
Q ss_pred EECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce----eEEeecCCcCeE
Q 001319 424 AFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK----LFNFEGHEAPVY 498 (1101)
Q Consensus 424 ~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~----~~~~~~h~~~v~ 498 (1101)
|+.|++|+|||+.++.... ...+.+|...|++++|+|+++ .|++|+.|++|++|+ ..... .....+|...|.
T Consensus 69 ~s~D~~i~vWd~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~--~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~ 145 (371)
T d1k8kc_ 69 CGTDRNAYVWTLKGRTWKP-TLVILRINRAARCVRWAPNEK--KFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVL 145 (371)
T ss_dssp EETTSCEEEEEEETTEEEE-EEECCCCSSCEEEEEECTTSS--EEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEE
T ss_pred EECCCeEEEEeeccccccc-ccccccccccccccccccccc--cceeecccCcceeeeeecccccccccccccccccccc
Confidence 9999999999999875433 224678999999999999999 899999999999999 44432 244567899999
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCC------------------eeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMG------------------SRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~------------------~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+++|+| ++.+|++++.|++|++|+..... .......+...|.+++|+|+|+++++++.
T Consensus 146 ~v~~~p--~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~s~~~-- 221 (371)
T d1k8kc_ 146 SLDWHP--NSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSH-- 221 (371)
T ss_dssp EEEECT--TSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEECSSSSEEEEEET--
T ss_pred cccccc--cccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccCcEEEEEeeccccccccccc--
Confidence 999987 66899999999999999975432 33455667778999999999999999985
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC--CeeeEee--c------------
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN--VNILTST--D------------ 624 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~--~~~~~~~--~------------ 624 (1101)
|+.|++||+.+++.+..+.+|.. .+.+++|+|++.+|++ +.|+.+++|.... +...... .
T Consensus 222 --d~~i~iwd~~~~~~~~~~~~~~~-~v~s~~fs~d~~~la~-g~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (371)
T d1k8kc_ 222 --DSTVCLADADKKMAVATLASETL-PLLAVTFITESSLVAA-GHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297 (371)
T ss_dssp --TTEEEEEEGGGTTEEEEEECSSC-CEEEEEEEETTEEEEE-ETTSSCEEEEEETTTTEEEECCCCCCC--------CH
T ss_pred --CCcceEEeeecccceeeeecccc-cceeeeecCCCCEEEE-EcCCceEEEEeeCCCceEEEeeeecCccccccccccc
Confidence 89999999999999999998876 7999999999876665 5577766665432 2211100 0
Q ss_pred -----------------------cCCCCCCCCeeEEecCC----CEEEEEEcCCcEEEEEcccccc
Q 001319 625 -----------------------AEGGLPNLPRLRFSKEG----NLLAVTTADNGFKILANAIGLR 663 (1101)
Q Consensus 625 -----------------------~~~~~~~v~~v~~s~~g----~~l~~~~~d~~i~iwd~~~~~~ 663 (1101)
...|...|.++++.+.+ ..+++++.||.|++||+.+...
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~~~~H~~~I~~i~~~~~~~~~~~~~~T~g~Dg~v~iW~~~~~~~ 363 (371)
T d1k8kc_ 298 RERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLES 363 (371)
T ss_dssp HHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHHH
T ss_pred eeeEecccceeEEeccccccceecccccCCEEEEEEeCCCCcceEEEEEEcCCCeEEEEeCCcChh
Confidence 00134467888888754 4689999999999999976533
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3e-32 Score=300.80 Aligned_cols=287 Identities=15% Similarity=0.216 Sum_probs=252.4
Q ss_pred cccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEE
Q 001319 400 SIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKV 479 (1101)
Q Consensus 400 ~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~i 479 (1101)
++|.||.+.|++++|+||+++||+|+.||+|+|||+.+++.+. .+.+|...|.+++|+|++. ++++|+.|+.+++
T Consensus 49 ~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~---~~~~~~~~v~~v~~~~~~~--~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 49 RTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVH---AIPLRSSWVMTCAYAPSGN--YVACGGLDNICSI 123 (340)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEE---EEECSCSCEEEEEECTTSS--EEEEEETTCCEEE
T ss_pred EEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEE---EEecccccEEeeEeeccce--eeeeecccceeec
Confidence 3589999999999999999999999999999999999988766 6789999999999999999 8999999999999
Q ss_pred EE-cCC----ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEE
Q 001319 480 WE-LSG----RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 480 wd-~~~----~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 554 (1101)
|+ ... .....+.+|........... +..+.....|.....|.................+....+.+.+.+++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLD---DNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFV 200 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEE---TTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEE
T ss_pred ccccccccccccceeccccccccccccccc---ccccccccccccccccccccccccccccccceeEeeeccccccceeE
Confidence 99 332 34566778888777666543 24778888899999999888887777777888899999999999999
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
+++. ++.|++||+.+++.+..+.+|.. .+.+++|+|++++|++|+.||.|++||+........+....+...|.+
T Consensus 201 ~~~~----d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~ 275 (340)
T d1tbga_ 201 SGAC----DASAKLWDVREGMCRQTFTGHES-DINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITS 275 (340)
T ss_dssp EEET----TTEEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEE
T ss_pred Eeec----CceEEEEECCCCcEEEEEeCCCC-CeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEE
Confidence 9885 89999999999999999999877 899999999999999999999999999999998888776666668999
Q ss_pred eEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCce
Q 001319 635 LRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPI 714 (1101)
Q Consensus 635 v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 714 (1101)
++|+|++++|++|+.||.|++||+.++ ..+..+
T Consensus 276 ~~~s~~~~~l~~g~~dg~i~iwd~~~~-~~~~~~---------------------------------------------- 308 (340)
T d1tbga_ 276 VSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVL---------------------------------------------- 308 (340)
T ss_dssp EEECSSSCEEEEEETTSCEEEEETTTC-CEEEEE----------------------------------------------
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCC-cEEEEE----------------------------------------------
Confidence 999999999999999999999998766 222222
Q ss_pred EEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 715 ILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 715 ~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.+|...|.+++|+|++.+|++++.||.|++||
T Consensus 309 -------------------~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 309 -------------------AGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp -------------------CCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred -------------------cCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 33788999999999999999999999999996
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.4e-32 Score=295.58 Aligned_cols=286 Identities=9% Similarity=0.101 Sum_probs=224.0
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
..||.+.|++++|||||++ ||+|+.||.|++||+.+++.+.. ...+|...|++++|+|+|+
T Consensus 8 ~~GH~~~V~~l~~s~dg~~-l~s~s~Dg~v~vWd~~~~~~~~~------------------~~~~h~~~v~~v~~~~~g~ 68 (299)
T d1nr0a2 8 RYGHNKAITALSSSADGKT-LFSADAEGHINSWDISTGISNRV------------------FPDVHATMITGIKTTSKGD 68 (299)
T ss_dssp ECCCSSCEEEEEECTTSSE-EEEEETTSCEEEEETTTCCEEEC------------------SSCSCSSCEEEEEECTTSC
T ss_pred cCCCCCCcEEEEECCCCCE-EEEEcCCCeEEEEECCCCcEEEE------------------EcCCCCCcEEEEEeeccce
Confidence 3459999999999999984 68999999999999999877642 2357999999999999997
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecCCcCeEE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYS 499 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~ 499 (1101)
++ +++.|+.+++|+...............|...+.+++|+++++ ++++++ ++.+++|+.. +..... ....+.+
T Consensus 69 ~~-~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~--~~~~~~-~~~i~~~~~~-~~~~~~--~~~~~~~ 141 (299)
T d1nr0a2 69 LF-TVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGD--IAVAAC-YKHIAIYSHG-KLTEVP--ISYNSSC 141 (299)
T ss_dssp EE-EEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSS--CEEEEE-SSEEEEEETT-EEEEEE--CSSCEEE
T ss_pred ee-cccceeeEEEeccCCccccccccccccccccccccccccccc--cccccc-cccccccccc-cccccc--ccccccc
Confidence 55 566799999999876544333334557888999999999998 455544 6789999932 222222 3345788
Q ss_pred EecccCCCccEEEEeccCCeEEEEecCCCCeee-eccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 500 ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV-DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 500 v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~-~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
++|++ ++.++++++.|+.|++||+++..... ....+...|.+++|+|+++++++++. ++.|++||+.++....
T Consensus 142 ~~~s~--~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~----d~~i~~~~~~~~~~~~ 215 (299)
T d1nr0a2 142 VALSN--DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQ----SRKVIPYSVANNFELA 215 (299)
T ss_dssp EEECT--TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEET----TSCEEEEEGGGTTEES
T ss_pred ccccc--ccccccccccccccccccccccccccccccccccccccccccccccccccccc----cccccccccccccccc
Confidence 88877 66899999999999999998776543 44557788999999999999999885 8899999998876543
Q ss_pred ---EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCC-CCCCCeeEEecCCCEEEEEEcCCcEE
Q 001319 579 ---TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGG-LPNLPRLRFSKEGNLLAVTTADNGFK 654 (1101)
Q Consensus 579 ---~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~-~~~v~~v~~s~~g~~l~~~~~d~~i~ 654 (1101)
.+.+|.. .+.+++|+|++++|++|+.||.|++||+.++..........+ ...+.++ +++++++|++++.|+.|+
T Consensus 216 ~~~~~~~h~~-~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~ 293 (299)
T d1nr0a2 216 HTNSWTFHTA-KVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIK 293 (299)
T ss_dssp CCCCCCCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEE
T ss_pred cccccccccc-ccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEE
Confidence 3445555 799999999999999999999999999988755443333222 2345555 456678999999999999
Q ss_pred EEEcc
Q 001319 655 ILANA 659 (1101)
Q Consensus 655 iwd~~ 659 (1101)
+||+.
T Consensus 294 iWdl~ 298 (299)
T d1nr0a2 294 FWNVP 298 (299)
T ss_dssp EEECC
T ss_pred EEecc
Confidence 99973
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=6.2e-32 Score=299.93 Aligned_cols=345 Identities=13% Similarity=0.147 Sum_probs=263.6
Q ss_pred eeeccCCCCce-EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcE
Q 001319 531 RVDYDAPGHWC-TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQI 609 (1101)
Q Consensus 531 ~~~~~~~~~~v-~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i 609 (1101)
+.++.+|...| +|+ ++++++|++|+. |+.|++||+.+++++.++.+|.. .|.+++|+|+ ++|++++.|+.|
T Consensus 5 ~~tL~GH~~~vitc~--~~~~~~l~tgs~----Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s~~-~~l~s~s~D~~i 76 (355)
T d1nexb2 5 RTTLRGHMTSVITCL--QFEDNYVITGAD----DKMIRVYDSINKKFLLQLSGHDG-GVWALKYAHG-GILVSGSTDRTV 76 (355)
T ss_dssp EEEEECCSSSCEEEE--EEETTEEEEEET----TTEEEEEETTTTEEEEEEECCSS-CEEEEEEETT-TEEEEEETTCCE
T ss_pred cEEECCcCCCcEEEE--EECCCEEEEEeC----CCeEEEEECCCCcEEEEEECCCC-CEEEEEEcCC-CEEEEEeccccc
Confidence 34567887765 555 457889999986 89999999999999999999987 8999999985 589999999999
Q ss_pred EEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecc
Q 001319 610 KFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSA 689 (1101)
Q Consensus 610 ~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~ 689 (1101)
++|+....+..................+++++..+++++.|+.|++|++.+...........
T Consensus 77 ~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~------------------ 138 (355)
T d1nexb2 77 RVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEH------------------ 138 (355)
T ss_dssp EEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------------------------
T ss_pred ccccccccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccc------------------
Confidence 99999999888777665554445667788899999999999999999987652111000000
Q ss_pred ccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcc-cEEEeecCCeEEEEEecC
Q 001319 690 SSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAV-GLLALGSNGVQKLWKWHR 768 (1101)
Q Consensus 690 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~-~l~~~~~dg~v~~w~~~~ 768 (1101)
........+... .++....
T Consensus 139 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~----------- 158 (355)
T d1nexb2 139 -------------------------------------------------DYPLVFHTPEENPYFVGVLR----------- 158 (355)
T ss_dssp -------------------------------------------------CCCEEESCTTTCTTEEEEEE-----------
T ss_pred -------------------------------------------------eeccceeccccccceeeeee-----------
Confidence 000000000000 0000000
Q ss_pred CCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCC
Q 001319 769 NEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPA 847 (1101)
Q Consensus 769 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~ 847 (1101)
.+...+. .+.+++.+++++. |+.|++||+.+++.+....++...
T Consensus 159 ---------------------------------~~~~~v~--~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~ 203 (355)
T d1nexb2 159 ---------------------------------GHMASVR--TVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDR 203 (355)
T ss_dssp ---------------------------------CCSSCEE--EEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSC
T ss_pred ---------------------------------ecccccc--ccccccceeeeecccceeeeeecccccceeeeeccccc
Confidence 1333343 3456788888887 899999999999999999999999
Q ss_pred eeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE
Q 001319 848 STFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT 927 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~ 927 (1101)
+.++.|++ ++.++++++.||.|++||+.++..+..+.+|...|.+++|+ +++|++++.||+|++||+.++.... .
T Consensus 204 ~~~~~~~~-~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~~~--~ 278 (355)
T d1nexb2 204 IYSTIYDH-ERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKF--S 278 (355)
T ss_dssp EEEEEEET-TTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCEEE--E
T ss_pred cccccccc-cceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeecccccccccccccceec--c
Confidence 99999999 89999999999999999999999999999999999999997 4699999999999999998865321 1
Q ss_pred EeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEE
Q 001319 928 IHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVF 1007 (1101)
Q Consensus 928 ~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vw 1007 (1101)
.+ .........+++++.+++++.|+.|++||+.+++.+..... +|..+|++++|+|+ .++++++.||.++||
T Consensus 279 ~~-----~~~~~~~~~~~~~~~~l~~g~d~~i~vwd~~tg~~~~~~~~--~~~~~V~~v~~~~~-~~~~~~s~dg~~~l~ 350 (355)
T d1nexb2 279 YH-----HTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANIL--KDADQIWSVNFKGK-TLVAAVEKDGQSFLE 350 (355)
T ss_dssp EE-----CTTCCCCCEEEECSSEEEEEETTEEEEEETTTCCBCCSCTT--TTCSEEEEEEEETT-EEEEEEESSSCEEEE
T ss_pred cc-----cCCceEEEEEcCCCCEEEEEeCCEEEEEECCCCCEEEEEec--CCCCCEEEEEEcCC-eEEEEEECCCcEEEE
Confidence 11 11233345678899999999999999999999998754332 34889999999986 477888999997776
Q ss_pred eC
Q 001319 1008 DA 1009 (1101)
Q Consensus 1008 d~ 1009 (1101)
.+
T Consensus 351 ~~ 352 (355)
T d1nexb2 351 IL 352 (355)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.3e-31 Score=287.69 Aligned_cols=296 Identities=16% Similarity=0.171 Sum_probs=225.4
Q ss_pred CeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccC
Q 001319 617 VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1101)
Q Consensus 617 ~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 696 (1101)
|+..+.+.+| ...|++++|+|+|++|++|+.||.|++||+.++. ..+.+.
T Consensus 2 g~~~~~~~GH--~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~-~~~~~~--------------------------- 51 (299)
T d1nr0a2 2 GSIDQVRYGH--NKAITALSSSADGKTLFSADAEGHINSWDISTGI-SNRVFP--------------------------- 51 (299)
T ss_dssp TEEEEEECCC--SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCC-EEECSS---------------------------
T ss_pred CccceEcCCC--CCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCc-EEEEEc---------------------------
Confidence 4566677665 4589999999999999999999999999998762 222111
Q ss_pred CCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCC
Q 001319 697 TPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGK 776 (1101)
Q Consensus 697 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~ 776 (1101)
..|...|.+++|+|++. +++++.|+.+++|+.........
T Consensus 52 -------------------------------------~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~~~~~~~~~-- 91 (299)
T d1nr0a2 52 -------------------------------------DVHATMITGIKTTSKGD-LFTVSWDDHLKVVPAGGSGVDSS-- 91 (299)
T ss_dssp -------------------------------------CSCSSCEEEEEECTTSC-EEEEETTTEEEEECSSSSSSCTT--
T ss_pred -------------------------------------CCCCCcEEEEEeeccce-eecccceeeEEEeccCCcccccc--
Confidence 23778899999999986 67778899999998654321100
Q ss_pred eeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecC
Q 001319 777 ATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQ 856 (1101)
Q Consensus 777 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~ 856 (1101)
.... ..+...+.+++++++|++++++.++.+.+|+... ..... ....+.+++|+|
T Consensus 92 ---------------~~~~-----~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~--~~~~~--~~~~~~~~~~s~- 146 (299)
T d1nr0a2 92 ---------------KAVA-----NKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGK--LTEVP--ISYNSSCVALSN- 146 (299)
T ss_dssp ---------------SCCE-----EECSSCEEEEEECTTSSCEEEEESSEEEEEETTE--EEEEE--CSSCEEEEEECT-
T ss_pred ---------------cccc-----cccccccccccccccccccccccccccccccccc--ccccc--cccccccccccc-
Confidence 0000 0266778999999999999999999999999543 33222 345688999999
Q ss_pred CCCEEEEEeCCCcEEEEEeecceEEE-eeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCC
Q 001319 857 DNNIIAIGTEDSTIHIYNVRVDEVKS-KLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKT 935 (1101)
Q Consensus 857 ~~~~la~g~~dg~v~iwd~~~~~~~~-~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~ 935 (1101)
++++|++|+.||.|++||+.+++... ....|...|++++|+|++++|++++.|+.|++||+.++.....
T Consensus 147 ~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~---------- 216 (299)
T d1nr0a2 147 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAH---------- 216 (299)
T ss_dssp TSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESC----------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc----------
Confidence 89999999999999999999887654 4457999999999999999999999999999999987442110
Q ss_pred CCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCcee
Q 001319 936 PTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLR 1015 (1101)
Q Consensus 936 ~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~ 1015 (1101)
......|..+|++++|+|+|++|++|+.||.|++||+.++...
T Consensus 217 -------------------------------------~~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~ 259 (299)
T d1nr0a2 217 -------------------------------------TNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH 259 (299)
T ss_dssp -------------------------------------CCCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSC
T ss_pred -------------------------------------cccccccccccccccccccccceEEEcCCCEEEEEECCCCCcc
Confidence 0111234789999999999999999999999999999987654
Q ss_pred EeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEECCCeEEEEeCC
Q 001319 1016 CYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGLTDGSVKVMEPS 1065 (1101)
Q Consensus 1016 ~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~Dg~v~iWd~~ 1065 (1101)
..... +.+...++...+++ ++.+|++++.||+|++||++
T Consensus 260 ~~~~~----------~~~~~~~v~~~~~~-~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 260 PIIIK----------GAHAMSSVNSVIWL-NETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp CEEET----------TSSTTSCEEEEEEE-ETTEEEEEETTSCEEEEECC
T ss_pred eEEEe----------cCCCCCcEEEEEEC-CCCEEEEEeCCCEEEEEecc
Confidence 33321 22222233344445 47899999999999999984
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.4e-31 Score=298.99 Aligned_cols=243 Identities=15% Similarity=0.125 Sum_probs=204.2
Q ss_pred CccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 406 PISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 406 ~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
..+|+|++|||||++||+|+.|+.|+|||+++++.. ....+.+|.++|++++|+|+++ +|++|+.|++|+||| .++
T Consensus 7 ~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~-~~~~l~gH~~~V~~l~fsp~~~--~l~s~s~D~~i~vWd~~~~ 83 (371)
T d1k8kc_ 7 VEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV-QVHELKEHNGQVTGVDWAPDSN--RIVTCGTDRNAYVWTLKGR 83 (371)
T ss_dssp SSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEE-EEEEEECCSSCEEEEEEETTTT--EEEEEETTSCEEEEEEETT
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEE-EEEEecCCCCCEEEEEECCCCC--EEEEEECCCeEEEEeeccc
Confidence 368999999999999999999999999999987632 3346889999999999999999 899999999999999 555
Q ss_pred c--eeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee----eeccCCCCceEEEEEccCCCEEEEeec
Q 001319 485 R--KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR----VDYDAPGHWCTTMLYSADGSRLFSCGT 558 (1101)
Q Consensus 485 ~--~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~----~~~~~~~~~v~~~~~s~d~~~l~~~~~ 558 (1101)
. ....+.+|...|.+++|+| +++.|++++.|++|++|+++..... .....+...|.+++|+|++++|++++.
T Consensus 84 ~~~~~~~~~~~~~~v~~i~~~p--~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~ 161 (371)
T d1k8kc_ 84 TWKPTLVILRINRAARCVRWAP--NEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSC 161 (371)
T ss_dssp EEEEEEECCCCSSCEEEEEECT--TSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEET
T ss_pred cccccccccccccccccccccc--ccccceeecccCcceeeeeecccccccccccccccccccccccccccccceecccc
Confidence 4 3455678999999999987 5689999999999999998776543 334556778999999999999999986
Q ss_pred CCCCCceEEEEeCCCC------------------eeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee
Q 001319 559 SKDGDSFLVEWNESEG------------------TIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL 620 (1101)
Q Consensus 559 ~~~~~~~i~iwd~~~~------------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~ 620 (1101)
|+.|++||.... +......+|.. .+.+++|+|++++|++++.|+.|++||+.+++.+
T Consensus 162 ----D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~ 236 (371)
T d1k8kc_ 162 ----DFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG-WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAV 236 (371)
T ss_dssp ----TSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS-CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEE
T ss_pred ----CcEEEEEeeccCccccccccccccccccceeeeeeccCccC-cEEEEEeecccccccccccCCcceEEeeecccce
Confidence 899999997643 34455556655 7889999999999999999999999999999998
Q ss_pred EeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEcccc
Q 001319 621 TSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 621 ~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
..+..+.. +|.+++|+|++++|++|. |+.+++|.....
T Consensus 237 ~~~~~~~~--~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 237 ATLASETL--PLLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp EEEECSSC--CEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred eeeecccc--cceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 88876644 799999999998877655 777777766544
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=6.8e-31 Score=289.76 Aligned_cols=317 Identities=18% Similarity=0.284 Sum_probs=253.0
Q ss_pred eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEE
Q 001319 445 SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAW 523 (1101)
Q Consensus 445 ~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~w 523 (1101)
..++||.+.|.+ +++++|+ +|+||+.||+|+||| .+++++.++.+|.+.|.+++|++ .+|++++.|+.+++|
T Consensus 10 ~~l~GH~~~V~s-~~~~~g~--~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~----~~l~s~s~D~~~~~~ 82 (342)
T d2ovrb2 10 KVLKGHDDHVIT-CLQFCGN--RIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRD----NIIISGSTDRTLKVW 82 (342)
T ss_dssp EEEECSTTSCEE-EEEEETT--EEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEET----TEEEEEETTSCEEEE
T ss_pred EEECCcCCceEE-EEEECCC--EEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCC----Cccccceeccccccc
Confidence 378999999865 4677888 899999999999999 89999999999999999999964 489999999999999
Q ss_pred ecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEE
Q 001319 524 LYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV 603 (1101)
Q Consensus 524 d~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 603 (1101)
+................+...... ...+..+.. ++.+.+|+..+++....+..... ......+....++++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~----d~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 153 (342)
T d2ovrb2 83 NAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSR----DATLRVWDIETGQCLHVLMGHVA---AVRCVQYDGRRVVSG 153 (342)
T ss_dssp ETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEET----TSEEEEEESSSCCEEEEEECCSS---CEEEEEECSSCEEEE
T ss_pred ccccccceecccccceeEeeeecc--ccccccccc----ceeEEEeecccccceeeeecccc---cceeeccccceeeee
Confidence 998887777766666666555543 345555553 88999999999988887766543 223445567789999
Q ss_pred eCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceee
Q 001319 604 GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1101)
Q Consensus 604 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1101)
+.|+.|++||....+.+..+..+. .....+++++.++++++.||.|++||+..+. .+..+.
T Consensus 154 ~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~-~~~~~~-------------- 214 (342)
T d2ovrb2 154 AYDFMVKVWDPETETCLHTLQGHT----NRVYSLQFDGIHVVSGSLDTSIRVWDVETGN-CIHTLT-------------- 214 (342)
T ss_dssp ETTSCEEEEEGGGTEEEEEECCCS----SCEEEEEECSSEEEEEETTSCEEEEETTTCC-EEEEEC--------------
T ss_pred cCCCeEEEeecccceeeEEEcCcc----cccccccCCCCEEEEEeCCCeEEEeecccce-eeeEec--------------
Confidence 999999999999998888877653 3566677789999999999999999986541 110000
Q ss_pred eeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEE
Q 001319 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 763 (1101)
Q Consensus 684 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~ 763 (1101)
T Consensus 215 -------------------------------------------------------------------------------- 214 (342)
T d2ovrb2 215 -------------------------------------------------------------------------------- 214 (342)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred EEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEee
Q 001319 764 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFM 842 (1101)
Q Consensus 764 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~ 842 (1101)
.|...+.+++++ ++++++++ ||.|++||+...+....+.
T Consensus 215 --------------------------------------~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~ 254 (342)
T d2ovrb2 215 --------------------------------------GHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQ 254 (342)
T ss_dssp --------------------------------------CCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred --------------------------------------ccccceeEEecC--CCEEEEEcCCCEEEEEeccccccccccc
Confidence 145556666654 45788887 8999999999888887776
Q ss_pred C---CCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec-----cCCCCeeEEEEcCCCCEEEEEeCCCc---
Q 001319 843 S---PPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK-----GHQKRITGLAFSTSLNILVSSGADAQ--- 911 (1101)
Q Consensus 843 ~---~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~-----~h~~~V~~l~~s~d~~~l~s~s~Dg~--- 911 (1101)
. |...+.++.++ ++++++|+.||+|++||+.+++++..+. +|.+.|++++|+|++.+|++|+.||+
T Consensus 255 ~~~~~~~~~~~~~~~---~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~ 331 (342)
T d2ovrb2 255 GPNKHQSAVTCLQFN---KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEET 331 (342)
T ss_dssp STTSCSSCEEEEEEC---SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCC
T ss_pred ccceeeeceeecccC---CCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCee
Confidence 5 34456666664 5799999999999999999999887763 68889999999999999999999986
Q ss_pred -EEEEECCC
Q 001319 912 -LCVWSIDT 919 (1101)
Q Consensus 912 -v~lwd~~~ 919 (1101)
|++||++.
T Consensus 332 ~l~~~Df~~ 340 (342)
T d2ovrb2 332 KLLVLDFDV 340 (342)
T ss_dssp EEEEEECCC
T ss_pred EEEEEeCCC
Confidence 99999874
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-29 Score=279.82 Aligned_cols=323 Identities=17% Similarity=0.232 Sum_probs=252.5
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
+-+|.+.|.+ +++++|++ ||||+.||+|+|||+.+++.+. ++.+|.+.|.+++|+|+
T Consensus 12 l~GH~~~V~s-~~~~~g~~-l~sgs~Dg~i~vWd~~~~~~~~-------------------~~~~h~~~V~~v~~~~~-- 68 (342)
T d2ovrb2 12 LKGHDDHVIT-CLQFCGNR-IVSGSDDNTLKVWSAVTGKCLR-------------------TLVGHTGGVWSSQMRDN-- 68 (342)
T ss_dssp EECSTTSCEE-EEEEETTE-EEEEETTSCEEEEETTTCCEEE-------------------ECCCCSSCEEEEEEETT--
T ss_pred ECCcCCceEE-EEEECCCE-EEEEeCCCeEEEEECCCCCEEE-------------------EEeCCCCCEEEEEeCCC--
Confidence 3469999876 47778984 6899999999999999988765 37889999999999975
Q ss_pred EEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeE
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVY 498 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~ 498 (1101)
+|++|+.|+.+++|+........ ....+...+....+.+ . .++.+..|+.+.+|+ .+++....+..+.....
T Consensus 69 ~l~s~s~D~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~--~--~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~ 141 (342)
T d2ovrb2 69 IIISGSTDRTLKVWNAETGECIH---TLYGHTSTVRCMHLHE--K--RVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141 (342)
T ss_dssp EEEEEETTSCEEEEETTTTEEEE---EECCCSSCEEEEEEET--T--EEEEEETTSEEEEEESSSCCEEEEEECCSSCEE
T ss_pred ccccceeccccccccccccccee---cccccceeEeeeeccc--c--cccccccceeEEEeecccccceeeeecccccce
Confidence 99999999999999998866443 3445555666655543 3 578888999999999 88887777766655544
Q ss_pred EEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEE
Q 001319 499 SICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKR 578 (1101)
Q Consensus 499 ~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~ 578 (1101)
.... ....+++++.|+.|++||.........+..+...+.. +++++.++++++. ++.|++||+..++.+.
T Consensus 142 ~~~~----~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~~~~~l~s~~~----dg~i~~~d~~~~~~~~ 211 (342)
T d2ovrb2 142 CVQY----DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS--LQFDGIHVVSGSL----DTSIRVWDVETGNCIH 211 (342)
T ss_dssp EEEE----CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEE--EEECSSEEEEEET----TSCEEEEETTTCCEEE
T ss_pred eecc----ccceeeeecCCCeEEEeecccceeeEEEcCccccccc--ccCCCCEEEEEeC----CCeEEEeecccceeee
Confidence 4432 3357889999999999999988888888777665554 4557889999986 8999999999999999
Q ss_pred EecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEc
Q 001319 579 TYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 579 ~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
.+.+|.. .+.+++++ ++++++++.||.|++||+...+....+..+... .....+++++++++++++.||.|++||+
T Consensus 212 ~~~~~~~-~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~s~s~Dg~i~iwd~ 287 (342)
T d2ovrb2 212 TLTGHQS-LTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPNKH-QSAVTCLQFNKNFVITSSDDGTVKLWDL 287 (342)
T ss_dssp EECCCCS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTTSC-SSCEEEEEECSSEEEEEETTSEEEEEET
T ss_pred Eeccccc-ceeEEecC--CCEEEEEcCCCEEEEEeccccccccccccccee-eeceeecccCCCeeEEEcCCCEEEEEEC
Confidence 9998876 67666665 579999999999999999998887777644321 2233445556789999999999999999
Q ss_pred cccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcc
Q 001319 659 AIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSS 738 (1101)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 738 (1101)
.++ +.++.+.. ....+|..
T Consensus 288 ~tg-~~i~~~~~------------------------------------------------------------~~~~~~~~ 306 (342)
T d2ovrb2 288 KTG-EFIRNLVT------------------------------------------------------------LESGGSGG 306 (342)
T ss_dssp TTC-CEEEEEEE------------------------------------------------------------CTTGGGTC
T ss_pred CCC-CEEEEEec------------------------------------------------------------ccCCCCCC
Confidence 877 22222211 01133777
Q ss_pred cEEEEEeecCcccEEEeecCCe----EEEEEec
Q 001319 739 KVVRLLYTNSAVGLLALGSNGV----QKLWKWH 767 (1101)
Q Consensus 739 ~i~~~~~s~~~~~l~~~~~dg~----v~~w~~~ 767 (1101)
.|.+++|+|++..+++++.||+ +++||++
T Consensus 307 ~v~~v~~s~~~~~la~g~~dGt~~~~l~~~Df~ 339 (342)
T d2ovrb2 307 VVWRIRASNTKLVCAVGSRNGTEETKLLVLDFD 339 (342)
T ss_dssp EEEEEEECSSEEEEEEECSSSSSCCEEEEEECC
T ss_pred CEEEEEECCCCCEEEEEeCCCCCeeEEEEEeCC
Confidence 8999999999999999998885 8999875
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.98 E-value=1.4e-30 Score=284.52 Aligned_cols=290 Identities=13% Similarity=0.220 Sum_probs=225.9
Q ss_pred CcEEEEEEecCCceEEEEEecc-CcEEEEecCCCceeccccceeecccccCccccccccccC-CccEEEEEEcc--CCCE
Q 001319 345 STVISMDFHPSHQTLLLVGSSN-GEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDV-PISVSRVAWSP--DGNY 420 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~d-~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h-~~~v~~~~~sp--dg~~ 420 (1101)
..+++++|+|+|+.+ |.++.+ ..|+.|+........ ...+.+| ...|++++|+| +|++
T Consensus 18 ~~~t~l~~~~~~~~l-a~~~~~~~~i~~~~~~~~~~~~-----------------~~~~~gh~~~~v~~v~fsP~~~g~~ 79 (325)
T d1pgua1 18 NFTTHLSYDPTTNAI-AYPCGKSAFVRCLDDGDSKVPP-----------------VVQFTGHGSSVVTTVKFSPIKGSQY 79 (325)
T ss_dssp TCCCCCEEETTTTEE-EEEETTEEEEEECCSSCCSSCS-----------------EEEECTTTTSCEEEEEECSSTTCCE
T ss_pred CCeEEEEECCCCCEE-EEEeCCCEEEEEEeCCCCCccc-----------------eEEEeCCCCCCEEEEEEeeCCCCCE
Confidence 357899999999965 555433 345566644332211 1125666 57899999998 6789
Q ss_pred EEEEECCCeEEEEeecCCcccccc-----eeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCC
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQH-----SQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHE 494 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~-----~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~ 494 (1101)
||+|+.||+|+|||+..++..... ..+..|.++|.+++|+++++.+..++++.++.+++|+ .+++++..+.+|.
T Consensus 80 lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~ 159 (325)
T d1pgua1 80 LCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHS 159 (325)
T ss_dssp EEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCS
T ss_pred EEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecc
Confidence 999999999999999877654322 1345788999999999999953334445678899999 8899999999999
Q ss_pred cCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec---cCCCCceEEEEEccC-CCEEEEeecCCCCCceEEEEe
Q 001319 495 APVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY---DAPGHWCTTMLYSAD-GSRLFSCGTSKDGDSFLVEWN 570 (1101)
Q Consensus 495 ~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~---~~~~~~v~~~~~s~d-~~~l~~~~~~~~~~~~i~iwd 570 (1101)
..|.+++|++..+ .++++++.|+.+++||+...+..... ..+...|.+++|+|+ +.++++++. |+.|++||
T Consensus 160 ~~v~~~~~~~~~~-~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~----d~~i~iwd 234 (325)
T d1pgua1 160 QRINACHLKQSRP-MRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGS----DRKISCFD 234 (325)
T ss_dssp SCEEEEEECSSSS-CEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEET----TCCEEEEE
T ss_pred ccccccccccccc-ceEEEeecccccccccccccccceecccccCCCCccEEeeeccccceecccccc----ccceeeee
Confidence 9999999987543 46788999999999999877655543 345667999999997 678888875 88999999
Q ss_pred CCCCeeEEEecccCCcceEEEEEe---CCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC-CCEEEE
Q 001319 571 ESEGTIKRTYAGFRKKSNGVVQFD---TTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE-GNLLAV 646 (1101)
Q Consensus 571 ~~~~~~~~~~~~~~~~~v~~~~~~---~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~-g~~l~~ 646 (1101)
+++++.+..+.+|.. .+..+.|+ +++++|++++.|+.|+|||+++++.+..+..+.+...+..+++.+. +.+|++
T Consensus 235 ~~~~~~~~~l~~~~~-~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s 313 (325)
T d1pgua1 235 GKSGEFLKYIEDDQE-PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIIS 313 (325)
T ss_dssp TTTCCEEEECCBTTB-CCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEE
T ss_pred ecccccccccccccc-ccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeEEEEEECCCCEEEE
Confidence 999999999998776 44444444 7889999999999999999999999998887766544555555543 348899
Q ss_pred EEcCCcEEEEEc
Q 001319 647 TTADNGFKILAN 658 (1101)
Q Consensus 647 ~~~d~~i~iwd~ 658 (1101)
++.||.|++||+
T Consensus 314 ~s~dg~i~vwdl 325 (325)
T d1pgua1 314 LSLDGTLNFYEL 325 (325)
T ss_dssp EETTSCEEEEET
T ss_pred EECCCEEEEEEC
Confidence 999999999985
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=5.5e-29 Score=271.71 Aligned_cols=289 Identities=14% Similarity=0.150 Sum_probs=217.6
Q ss_pred cccEEEEEeecCcccEEEeecCC-eEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecC-
Q 001319 737 SSKVVRLLYTNSAVGLLALGSNG-VQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSK- 814 (1101)
Q Consensus 737 ~~~i~~~~~s~~~~~l~~~~~dg-~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~- 814 (1101)
...+++++|+|+++.++.++.+. .++.|+...... .....+.+ ++...|++++|+|
T Consensus 17 ~~~~t~l~~~~~~~~la~~~~~~~~i~~~~~~~~~~---------------------~~~~~~~g-h~~~~v~~v~fsP~ 74 (325)
T d1pgua1 17 RNFTTHLSYDPTTNAIAYPCGKSAFVRCLDDGDSKV---------------------PPVVQFTG-HGSSVVTTVKFSPI 74 (325)
T ss_dssp TTCCCCCEEETTTTEEEEEETTEEEEEECCSSCCSS---------------------CSEEEECT-TTTSCEEEEEECSS
T ss_pred CCCeEEEEECCCCCEEEEEeCCCEEEEEEeCCCCCc---------------------cceEEEeC-CCCCCEEEEEEeeC
Confidence 44567899999999888776553 345554221100 00011111 2457899999998
Q ss_pred -CCCeEEEEc-CCeEEEEECCCceE--------EEEeeCCCCCeeEEEEecCCCCEEEEEeC--CCcEEEEEeecceEEE
Q 001319 815 -NDSYVMSAT-GGKISLFNMMTFKV--------MTTFMSPPPASTFLAFHPQDNNIIAIGTE--DSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 815 -dg~~la~~~-dg~i~vwd~~~~~~--------~~~~~~~~~~i~~l~~s~~~~~~la~g~~--dg~v~iwd~~~~~~~~ 882 (1101)
+|++||+|+ ||+|++||+..++. ...+..|.++|.+++|++ ++++|++++. ++.+++|+..+++.+.
T Consensus 75 ~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 153 (325)
T d1pgua1 75 KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDF-EGRRLCVVGEGRDNFGVFISWDSGNSLG 153 (325)
T ss_dssp TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECT-TSSEEEEEECCSSCSEEEEETTTCCEEE
T ss_pred CCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECC-CCCccceeeccccceEEEEeecccccce
Confidence 678999998 89999999865432 234566889999999999 8888877764 6789999999999999
Q ss_pred eeccCCCCeeEEEEcCCCCE-EEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCC-CCEEEEE-eCCeE
Q 001319 883 KLKGHQKRITGLAFSTSLNI-LVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNAD-QVRMLVV-HETQL 959 (1101)
Q Consensus 883 ~~~~h~~~V~~l~~s~d~~~-l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d-~~~l~~~-~d~~i 959 (1101)
.+.+|...|++++|+|++.+ +++++.|+.|++||+.+++.... ......+. ..+.+++|+|+ +.+++++ .|+.|
T Consensus 154 ~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~--~~~~~~~~-~~v~~v~~~pd~~~~l~s~~~d~~i 230 (325)
T d1pgua1 154 EVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSAS--DRTHHKQG-SFVRDVEFSPDSGEFVITVGSDRKI 230 (325)
T ss_dssp ECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEE--ECSSSCTT-CCEEEEEECSTTCCEEEEEETTCCE
T ss_pred eeeecccccccccccccccceEEEeeccccccccccccccccee--cccccCCC-CccEEeeeccccceeccccccccce
Confidence 99999999999999999875 77899999999999987654322 22223333 67899999997 5777775 59999
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEc---cCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccc
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYS---CNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVY 1036 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s---~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~ 1036 (1101)
++||+.+++.+..+..+ ..++..+.|+ +||++|++++.|+.|+|||+.+++++..+.. |.+...
T Consensus 231 ~iwd~~~~~~~~~l~~~---~~~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~~----------~~~~~~ 297 (325)
T d1pgua1 231 SCFDGKSGEFLKYIEDD---QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTL----------DKQQLG 297 (325)
T ss_dssp EEEETTTCCEEEECCBT---TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEEC----------CTTCGG
T ss_pred eeeeecccccccccccc---ccccccceeeeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEEe----------cCCccc
Confidence 99999999999988765 4455444444 6899999999999999999999999887764 344433
Q ss_pred eEEEEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1037 PLVVAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1037 ~~~l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
...+++.+.++.+|++++.||+|++||+
T Consensus 298 ~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 298 NQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp GCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CeEEEEEECCCCEEEEEECCCEEEEEEC
Confidence 3334443333568999999999999996
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=3.6e-27 Score=266.63 Aligned_cols=367 Identities=10% Similarity=0.020 Sum_probs=266.6
Q ss_pred eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecC
Q 001319 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAG 437 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~ 437 (1101)
.++++.+.||+|.|||..+++.+.. +..| ..+..++|||||++|++++.|++|++||+.+
T Consensus 33 ~~~v~~~d~g~v~v~D~~t~~v~~~-------------------~~~g-~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t 92 (432)
T d1qksa2 33 LFSVTLRDAGQIALIDGSTYEIKTV-------------------LDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWM 92 (432)
T ss_dssp EEEEEETTTTEEEEEETTTCCEEEE-------------------EECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTS
T ss_pred EEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEcCCCCEEEEEeeC
Confidence 3568889999999999999998763 4444 3699999999999999999999999999998
Q ss_pred Cccc--ccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEe
Q 001319 438 SNDL--RQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFST 514 (1101)
Q Consensus 438 ~~~~--~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~ 514 (1101)
++.. ..+....+|.+.+.+.+|+|||++ ++++++.+++|++|| .+++++..+..|...+..+.+.+.+
T Consensus 93 ~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~-l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~-------- 163 (432)
T d1qksa2 93 KEPTTVAEIKIGSEARSIETSKMEGWEDKY-AIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEP-------- 163 (432)
T ss_dssp SSCCEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCC--------
T ss_pred CCceEEEEEecCCCCCCeEEecccCCCCCE-EEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCC--------
Confidence 7643 222234467778888899999995 468889999999999 9999999888777655544443321
Q ss_pred ccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEe
Q 001319 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1101)
Q Consensus 515 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1101)
....+.++++|..++.... .++.|.+||..+++.........+.....++|+
T Consensus 164 -------------------------~~~~v~~s~dg~~~~vs~~---~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s 215 (432)
T d1qksa2 164 -------------------------RVAAILASHYRPEFIVNVK---ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD 215 (432)
T ss_dssp -------------------------CEEEEEECSSSSEEEEEET---TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC
T ss_pred -------------------------ceeEEEECCCCCEEEEEEc---cCCeEEEEEccCCCcceEEEEcccCccccceEC
Confidence 2334678888888766553 378899999988776555444444467889999
Q ss_pred CCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCC---CCCCCCeeEEecCCCEEEEEE-cCCcEEEEEcccccccccccc
Q 001319 595 TTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEG---GLPNLPRLRFSKEGNLLAVTT-ADNGFKILANAIGLRSLRAVE 669 (1101)
Q Consensus 595 ~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~---~~~~v~~v~~s~~g~~l~~~~-~d~~i~iwd~~~~~~~~~~~~ 669 (1101)
|+|+++++++ .++.+.++|..+++.+..+.... +........+...+...++.. .++.+.+|+......
T Consensus 216 pdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~lg~~~v~~~~~~~~~~------ 289 (432)
T d1qksa2 216 GSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRGANFVHPTFGPVWATSHMGDDSVALIGTDPEGH------ 289 (432)
T ss_dssp TTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTCEEEEETTTEEEEEEEBSSSSEEEEEECCTTTC------
T ss_pred CCCCEEEEeccccceEEEeecccceEEEEeccCccccccCcccceecCCCCceecccccCCceEEecccccccc------
Confidence 9999888876 56689999999988887765432 111222233333333333332 266777776543200
Q ss_pred CCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCc
Q 001319 670 NPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSA 749 (1101)
Q Consensus 670 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~ 749 (1101)
..+...+....+++++
T Consensus 290 ----------------------------------------------------------------~~~~~~v~~~~~~~~g 305 (432)
T d1qksa2 290 ----------------------------------------------------------------PDNAWKILDSFPALGG 305 (432)
T ss_dssp ----------------------------------------------------------------TTTBTSEEEEEECSCS
T ss_pred ----------------------------------------------------------------cccccEEEEEEEcCCC
Confidence 1255677888899999
Q ss_pred ccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEE
Q 001319 750 VGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKIS 828 (1101)
Q Consensus 750 ~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~ 828 (1101)
..+++++.+...++|...... .+......+++ ||++.+++++ |+.++
T Consensus 306 ~~~~~~s~p~~~~lw~~~~~~-------------------------------~~~~~~~sv~v-pDg~~la~~s~d~~~k 353 (432)
T d1qksa2 306 GSLFIKTHPNSQYLYVDATLN-------------------------------PEAEISGSVAV-FDIKAMTGDGSDPEFK 353 (432)
T ss_dssp CCCCEECCTTCSEEEEECTTC-------------------------------SSHHHHTCEEE-EEGGGCCCSSSCCCEE
T ss_pred CeEEEEecCCccceeecccCC-------------------------------CCCCeeeEEEE-EechhhcccccCCceE
Confidence 889999999999999753211 12222334555 8999999998 88999
Q ss_pred EEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEe-----CCCcEEEEEeecceEEEeeccC
Q 001319 829 LFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGT-----EDSTIHIYNVRVDEVKSKLKGH 887 (1101)
Q Consensus 829 vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~-----~dg~v~iwd~~~~~~~~~~~~h 887 (1101)
+|++.++..+ ..|...+.+++||| ||++++++. .+|.|.|||..++++...+.+.
T Consensus 354 ~w~~~~~~~l---~~~~~~v~~~~fS~-DG~~v~~S~~~~~~~~g~i~i~D~~T~k~~~~i~~~ 413 (432)
T d1qksa2 354 TLPIAEWAGI---TEGQPRVVQGEFNK-DGTEVWFSVWNGKDQESALVVVDDKTLELKHVIKDE 413 (432)
T ss_dssp EECHHHHHTC---CSSCCEEEEEEECT-TSSEEEEEEECCTTSCCEEEEEETTTTEEEEEECCT
T ss_pred eccccccccc---CCCCCcEEEeEECC-CCCEEEEEEecCCCCCCcEEEEECCCceEEeEecCC
Confidence 9998665332 35667899999999 888775554 4689999999999998887653
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.8e-26 Score=247.17 Aligned_cols=267 Identities=10% Similarity=0.130 Sum_probs=208.4
Q ss_pred ceeEeec-CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEE
Q 001319 336 TVAVSLH-QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAW 414 (1101)
Q Consensus 336 ~~~~~~~-h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~ 414 (1101)
++++++. |.++|++++|+| |+||+.||+|++||+.++ ..+|...|.+++|
T Consensus 4 ~~i~~l~gH~~~I~~l~~s~-----l~sgs~Dg~v~~Wd~~~~------------------------~~~h~~~V~~~~~ 54 (287)
T d1pgua2 4 EVLKTISGHNKGITALTVNP-----LISGSYDGRIMEWSSSSM------------------------HQDHSNLIVSLDN 54 (287)
T ss_dssp EEEEEECCCSSCEEEEETTT-----TEEEETTSCEEETTTTEE------------------------ECCCCSCEEEEEC
T ss_pred ceeEEECCCCCceEEEEECc-----EEEEeCCCeEEEEECCCC------------------------CCCCCCCEEEEEe
Confidence 3445555 999999999987 589999999999998754 3458999999999
Q ss_pred ccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC
Q 001319 415 SPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH 493 (1101)
Q Consensus 415 spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h 493 (1101)
++++ .+++++.|++|++|++...+ ....+.++++.+++. .+++++ ++.+.+|+ .+++.+..+..+
T Consensus 55 ~~~~-~~~s~s~D~~v~~w~~~~~~----------~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 120 (287)
T d1pgua2 55 SKAQ-EYSSISWDDTLKVNGITKHE----------FGSQPKVASANNDGF--TAVLTN-DDDLLILQSFTGDIIKSVRLN 120 (287)
T ss_dssp CSTT-CCEEEETTTEEEETTEEEEE----------CSSCEEEEEECSSSE--EEEEET-TSEEEEEETTTCCEEEEEECS
T ss_pred cCCC-eEEEEeeccccccccccccc----------cccceeeeeeccCCc--eEEEee-cccceeeeccceeeeeecccc
Confidence 9765 57889999999999987532 234577889999887 555554 66788888 888888877643
Q ss_pred CcCeEEEecccCCCccEEEEeccC-CeEEEEecCCCCeeeecc-CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNE 571 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~ 571 (1101)
..+.++. + ++..+++++.+ +.+++|++.......... .+...+++++|+|++.+|++++. ++.|++||+
T Consensus 121 -~~~~~~~--~--~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~----dg~i~i~d~ 191 (287)
T d1pgua2 121 -SPGSAVS--L--SQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDV----MGKILLYDL 191 (287)
T ss_dssp -SCEEEEE--E--CSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEET----TSCEEEEET
T ss_pred -ceeeeee--c--cCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccc----cccccceee
Confidence 3455544 3 33456666655 579999987766655544 35568999999999999999986 889999999
Q ss_pred CCCeeEEE-ecccCCcceEEEEEeCC----------CCEEEEEeCCCcEEEEECCC-CeeeEeeccCCCCCCCCeeEEec
Q 001319 572 SEGTIKRT-YAGFRKKSNGVVQFDTT----------QNHFLAVGEDSQIKFWDMDN-VNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 572 ~~~~~~~~-~~~~~~~~v~~~~~~~~----------~~~l~~~~~dg~i~iwd~~~-~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
.+++.... +.+|.. .+.+++|+|. +.++++|+.|+.|++||+.+ ++.+..+..| ...|.+++|+|
T Consensus 192 ~~~~~~~~~~~~h~~-~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h--~~~V~~v~~~~ 268 (287)
T d1pgua2 192 QSREVKTSRWAFRTS-KINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAH--KDGVNNLLWET 268 (287)
T ss_dssp TTTEEEECCSCCCSS-CEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSS--TTCEEEEEEEE
T ss_pred ccccccccccccccc-ccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCC--CCCeEEEEECC
Confidence 99987654 455555 7999999875 46899999999999999976 4555555544 44899999999
Q ss_pred CCCEEEEEEcCCcEEEEEc
Q 001319 640 EGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~ 658 (1101)
++ .|++++.|+.|++|++
T Consensus 269 ~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 269 PS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp TT-EEEEEETTSCEEEEEE
T ss_pred CC-EEEEEECCCeEEEEEE
Confidence 86 6889999999999986
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=8.7e-26 Score=242.13 Aligned_cols=268 Identities=19% Similarity=0.267 Sum_probs=214.7
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
+|...|+|++ +||+ +||||+.||+|+|||+.+++.+. ++.+|.+.|.+++| ++++|
T Consensus 13 ~~~~~V~c~~--~d~~-~l~sgs~Dg~i~vWd~~~~~~~~-------------------~l~~H~~~V~~v~~--~~~~l 68 (293)
T d1p22a2 13 ETSKGVYCLQ--YDDQ-KIVSGLRDNTIKIWDKNTLECKR-------------------ILTGHTGSVLCLQY--DERVI 68 (293)
T ss_dssp SSCCCEEEEE--CCSS-EEEEEESSSCEEEEESSSCCEEE-------------------EECCCSSCEEEEEC--CSSEE
T ss_pred CCCCCEEEEE--EcCC-EEEEEeCCCeEEEEECCCCcEEE-------------------EEecCCCCEeeeec--cccee
Confidence 4788999875 4787 56999999999999999988765 48899999999887 68899
Q ss_pred EEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCc---eeEEeecCCcCe
Q 001319 422 GVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGR---KLFNFEGHEAPV 497 (1101)
Q Consensus 422 as~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~---~~~~~~~h~~~v 497 (1101)
++|+.|+.|++|++..+.... ....+.. ....+.+... .++++..++.+.+|| .... ....+..|...+
T Consensus 69 ~s~s~D~~i~~~~~~~~~~~~---~~~~~~~--~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 141 (293)
T d1p22a2 69 ITGSSDSTVRVWDVNTGEMLN---TLIHHCE--AVLHLRFNNG--MMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAV 141 (293)
T ss_dssp EEEETTSCEEEEESSSCCEEE---EECCCCS--CEEEEECCTT--EEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCE
T ss_pred ecccccccccccccccccccc---ccccccc--cccccccccc--ceeecccccceeEeecccccccccccccccccccc
Confidence 999999999999999887554 2223332 2334445555 689999999999999 4443 345567788888
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeE
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIK 577 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~ 577 (1101)
..+.+.. ..+++++.|+.|++||+.+.+....+..+...+..+.++ +.++++++. ++.|++||+.+.+.+
T Consensus 142 ~~~~~~~----~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~----dg~i~i~d~~~~~~~ 211 (293)
T d1p22a2 142 NVVDFDD----KYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYR--DRLVVSGSS----DNTIRLWDIECGACL 211 (293)
T ss_dssp EEEEEET----TEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEE--TTEEEEEET----TSCEEEEETTTCCEE
T ss_pred ccceecc----cccccccCCCceeeecCCCCcEEEEEcccccccccccCC--CCeEEEecC----CCEEEEEecccceee
Confidence 8887643 478899999999999999999988888888888777764 568888875 889999999999999
Q ss_pred EEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCC---------CeeeEeeccCCCCCCCCeeEEecCCCEEEEEE
Q 001319 578 RTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDN---------VNILTSTDAEGGLPNLPRLRFSKEGNLLAVTT 648 (1101)
Q Consensus 578 ~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~---------~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~ 648 (1101)
..+.++.. .+. .+.+++.+|++++.||.|++||+.. ...+..+..| ...|.+++| ++.+|++++
T Consensus 212 ~~~~~~~~-~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H--~~~V~~v~~--d~~~l~s~s 284 (293)
T d1p22a2 212 RVLEGHEE-LVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEH--SGRVFRLQF--DEFQIVSSS 284 (293)
T ss_dssp EEECCCSS-CEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCC--SSCCCCEEE--CSSCEEECC
T ss_pred eeecccce-eee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCC--CCCEEEEEE--cCCEEEEEe
Confidence 99988765 443 4667889999999999999999753 2345555555 447999988 567899999
Q ss_pred cCCcEEEEE
Q 001319 649 ADNGFKILA 657 (1101)
Q Consensus 649 ~d~~i~iwd 657 (1101)
.||+|++||
T Consensus 285 ~Dg~i~iWD 293 (293)
T d1p22a2 285 HDDTILIWD 293 (293)
T ss_dssp SSSEEEEEC
T ss_pred cCCEEEEeC
Confidence 999999997
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.95 E-value=1.3e-26 Score=263.34 Aligned_cols=363 Identities=8% Similarity=-0.010 Sum_probs=245.8
Q ss_pred EEecCCce-EEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCe
Q 001319 351 DFHPSHQT-LLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHL 429 (1101)
Q Consensus 351 ~fspdg~~-llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~ 429 (1101)
.+++|.+. ++++++.||+|+|||+.+++.+.. +..| ..+..++|||||++|++++.|++
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~-------------------l~~g-~~~~~vafSPDGk~l~~~~~d~~ 84 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKV-------------------IDTG-YAVHISRMSASGRYLLVIGRDAR 84 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEE-------------------EECC-SSEEEEEECTTSCEEEEEETTSE
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEE-------------------EeCC-CCeeEEEECCCCCEEEEEeCCCC
Confidence 35555443 457788899999999999988763 5555 46899999999999999999999
Q ss_pred EEEEeecCCcccc--cceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCC
Q 001319 430 IQLYSYAGSNDLR--QHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKE 506 (1101)
Q Consensus 430 i~vwd~~~~~~~~--~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~ 506 (1101)
|++||+.+++... .+....+|.+.+.+++|+|||++ +++++..++++++|| .++.++..+.+|...+..+.+.+.+
T Consensus 85 v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~-l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (426)
T d1hzua2 85 IDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRY-TIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEP 163 (426)
T ss_dssp EEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTE-EEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCC
T ss_pred EEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCE-EEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCC
Confidence 9999999987543 22233467788889999999995 456777899999999 8888898888888877777765543
Q ss_pred CccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE-ecccCC
Q 001319 507 NIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAGFRK 585 (1101)
Q Consensus 507 ~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~~~~ 585 (1101)
. ...+..+.|+...+|... +.+.+.+++...+..... ..++ .
T Consensus 164 ~-~~~i~~s~d~~~~~~~~~-----------------------------------~~~~i~~~~~~~~~~~~~~~~~~-~ 206 (426)
T d1hzua2 164 R-VAAIIASHEHPEFIVNVK-----------------------------------ETGKVLLVNYKDIDNLTVTSIGA-A 206 (426)
T ss_dssp C-EEEEEECSSSSEEEEEET-----------------------------------TTTEEEEEECSSSSSCEEEEEEC-C
T ss_pred c-eeEEEECCCCCEEEEecC-----------------------------------CCCeEEEEEeccccceeeEEecc-C
Confidence 2 233444445444444321 133444444444332221 1222 2
Q ss_pred cceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEE---EEEcCCcEEEEEcccc
Q 001319 586 KSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA---VTTADNGFKILANAIG 661 (1101)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~---~~~~d~~i~iwd~~~~ 661 (1101)
..+..+.++|++++++++. .+..+.+++..+++.+................+...+...+ ....|+.+.+|+....
T Consensus 207 ~~~~~~~~~~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~ 286 (426)
T d1hzua2 207 PFLADGGWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPK 286 (426)
T ss_dssp SSEEEEEECTTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTT
T ss_pred CccEeeeECCCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeecccc
Confidence 3677799999999988876 66779999999999988876654443444555554433221 1223555555554322
Q ss_pred ccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEE
Q 001319 662 LRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVV 741 (1101)
Q Consensus 662 ~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~ 741 (1101)
....
T Consensus 287 ~~~~---------------------------------------------------------------------------- 290 (426)
T d1hzua2 287 NHPQ---------------------------------------------------------------------------- 290 (426)
T ss_dssp TCTT----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 1000
Q ss_pred EEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEE
Q 001319 742 RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMS 821 (1101)
Q Consensus 742 ~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~ 821 (1101)
..+... ..+. +|...+..++|+|||++|++
T Consensus 291 -----------------------------------------------~~~~~~-~~l~--g~~~~v~~v~~sPdg~~l~v 320 (426)
T d1hzua2 291 -----------------------------------------------YAWKKV-AELQ--GQGGGSLFIKTHPKSSHLYV 320 (426)
T ss_dssp -----------------------------------------------TBTSEE-EEEE--CSSSCCCCEECCTTCSEEEE
T ss_pred -----------------------------------------------ccceEe-EEEe--cCCCceeEEEcCCCCceEEE
Confidence 000000 0011 26777888999999999885
Q ss_pred -------Ec-CCeEEEEECCCceEEEEe---------eCCCCCeeEEEEecCCCCEEEE-E----eCCCcEEEEEeecce
Q 001319 822 -------AT-GGKISLFNMMTFKVMTTF---------MSPPPASTFLAFHPQDNNIIAI-G----TEDSTIHIYNVRVDE 879 (1101)
Q Consensus 822 -------~~-dg~i~vwd~~~~~~~~~~---------~~~~~~i~~l~~s~~~~~~la~-g----~~dg~v~iwd~~~~~ 879 (1101)
+. +++|+|||+.+++...++ ..+...|..++||| ||+++++ + +.+|.|+|||..+++
T Consensus 321 ~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSp-DGk~i~vs~~~~~~~~~~i~v~D~~T~k 399 (426)
T d1hzua2 321 DTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNK-RGDEVWFSVWNGKNDSSALVVVDDKTLK 399 (426)
T ss_dssp CCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECS-SSSEEEEEECCCTTSCCEEEEEETTTTE
T ss_pred eecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECC-CCCEEEEEEecCCCCCCeEEEEECCCCe
Confidence 33 678999999998776554 23556799999999 8876643 2 367899999999999
Q ss_pred EEEeeccCCCCeeEEEEcCCCCEEE
Q 001319 880 VKSKLKGHQKRITGLAFSTSLNILV 904 (1101)
Q Consensus 880 ~~~~~~~h~~~V~~l~~s~d~~~l~ 904 (1101)
....+.++. .++|+|++-+
T Consensus 400 ~~~~i~~~~------~~tp~Gk~~~ 418 (426)
T d1hzua2 400 LKAVVKDPR------LITPTGKFNV 418 (426)
T ss_dssp EEEEECCTT------CCSEEEEEEH
T ss_pred EEEEECCCC------ccCCCceEeE
Confidence 999888774 3457776643
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.2e-25 Score=252.42 Aligned_cols=282 Identities=9% Similarity=0.063 Sum_probs=205.2
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccc---cceeeecccCcEEEEEEe---c-CC-CceEEEEec
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLR---QHSQIDAHVGAVNDLAFA---Y-PN-KLLCVVTCG 472 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~---~~~~l~~h~~~V~~l~~s---~-d~-~~~~l~s~~ 472 (1101)
..++|.+.|.++++++ ++|++|+.|++|+|||..+.+... .......|...+..+... + ++ ...++++++
T Consensus 9 ~~~~H~~~I~~v~~~~--~~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 86 (393)
T d1sq9a_ 9 AGKAHDADIFSVSACN--SFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTS 86 (393)
T ss_dssp ESSCSSSCEEEEEECS--SEEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cCCcccCccEEEEEeC--CEEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEe
Confidence 4788999999999874 699999999999999987765321 111223454444333321 1 11 112678999
Q ss_pred CCceEEEEE-cCCceeEE-----e-----ecCCcCeEEEecccCCC---ccEEEEeccCCeEEEEecCCCCe--------
Q 001319 473 DDKLIKVWE-LSGRKLFN-----F-----EGHEAPVYSICPHHKEN---IQFIFSTAIDGKIKAWLYDTMGS-------- 530 (1101)
Q Consensus 473 ~d~~v~iwd-~~~~~~~~-----~-----~~h~~~v~~v~~~~~~~---~~~l~s~~~d~~i~~wd~~~~~~-------- 530 (1101)
.||.|++|+ ..+..... . ..+...+..+++.+..+ +.++++++.||++++|++.....
T Consensus 87 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~ 166 (393)
T d1sq9a_ 87 FSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLN 166 (393)
T ss_dssp TTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTC
T ss_pred CCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeee
Confidence 999999999 33322111 1 12445567777765432 57899999999999999853221
Q ss_pred ----------eeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec------ccCCcceEEEEEe
Q 001319 531 ----------RVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA------GFRKKSNGVVQFD 594 (1101)
Q Consensus 531 ----------~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~------~~~~~~v~~~~~~ 594 (1101)
......+...+.+++|+|++ ++++++. |+.|++||+.+++.+..+. +|.. .|.+++|+
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~----Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~-~V~~l~~s 240 (393)
T d1sq9a_ 167 WSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFN----NGTVQISELSTLRPLYNFESQHSMINNSN-SIRSVKFS 240 (393)
T ss_dssp CCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECT----TSEEEEEETTTTEEEEEEECCC---CCCC-CEEEEEEC
T ss_pred eccceecccceecccCCCCcEEEEEECCCC-EEEEEeC----CCcEEEEeecccccccccccccccccccc-eEEEcccc
Confidence 11122334468899999998 7888875 8999999999998877654 3444 79999999
Q ss_pred CCCCEEEEEeCCCc---EEEEECCCCeeeEeecc-----------CCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccc
Q 001319 595 TTQNHFLAVGEDSQ---IKFWDMDNVNILTSTDA-----------EGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAI 660 (1101)
Q Consensus 595 ~~~~~l~~~~~dg~---i~iwd~~~~~~~~~~~~-----------~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~ 660 (1101)
|+|++|++|+.|++ |++||+.+++.+..+.. .+|...|++++|+|++++|++++.|++|++||+.+
T Consensus 241 pdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~ 320 (393)
T d1sq9a_ 241 PQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKT 320 (393)
T ss_dssp SSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTT
T ss_pred cccceeeeecCCCCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCC
Confidence 99999999998874 99999999988877642 13456899999999999999999999999999999
Q ss_pred cccccccccCCCcccccCcceeeeeeeccccc
Q 001319 661 GLRSLRAVENPPFEALRTPIESVALKVSASSA 692 (1101)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l 692 (1101)
+ .++..+.+|..... .....+++++++..+
T Consensus 321 g-~~~~~l~gH~~~v~-~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 321 K-ERITTLNMHCDDIE-IEEDILAVDEHGDSL 350 (393)
T ss_dssp T-EEEEEEECCGGGCS-SGGGCCCBCTTSCBC
T ss_pred C-CEEEEECCcCCccc-CCccEEEECCCCCEE
Confidence 8 67777877655432 223456788888776
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.95 E-value=1.9e-27 Score=264.29 Aligned_cols=192 Identities=15% Similarity=0.141 Sum_probs=158.3
Q ss_pred EEEEEec-CCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC
Q 001319 348 ISMDFHP-SHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT 426 (1101)
Q Consensus 348 ~~v~fsp-dg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~ 426 (1101)
.+-.||| ||++ +|++ .+|.|.+||+.++..+. + +|...|.+++|||||++|++++.
T Consensus 6 ~~~~fSP~dG~~-~a~~-~~g~v~v~d~~~~~~~~--------------------~-~~~~~v~~~~~spDg~~l~~~~~ 62 (360)
T d1k32a3 6 FAEDFSPLDGDL-IAFV-SRGQAFIQDVSGTYVLK--------------------V-PEPLRIRYVRRGGDTKVAFIHGT 62 (360)
T ss_dssp GEEEEEECGGGC-EEEE-ETTEEEEECTTSSBEEE--------------------C-SCCSCEEEEEECSSSEEEEEEEE
T ss_pred hcccccCCCCCE-EEEE-ECCeEEEEECCCCcEEE--------------------c-cCCCCEEEEEECCCCCEEEEEEc
Confidence 3467999 9995 4665 46899999998876543 2 58999999999999999998776
Q ss_pred CC--eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecc
Q 001319 427 KH--LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPH 503 (1101)
Q Consensus 427 d~--~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~ 503 (1101)
+. .|++||+++++.. .+..|...|.+++|+|||+ +|++++.++.+++|+ .+++....+..|...+.+++|+
T Consensus 63 ~~g~~v~v~d~~~~~~~----~~~~~~~~v~~~~~spdg~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 136 (360)
T d1k32a3 63 REGDFLGIYDYRTGKAE----KFEENLGNVFAMGVDRNGK--FAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTIS 136 (360)
T ss_dssp TTEEEEEEEETTTCCEE----ECCCCCCSEEEEEECTTSS--EEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEEC
T ss_pred CCCCEEEEEECCCCcEE----EeeCCCceEEeeeeccccc--ccceeccccccccccccccceeeeeecccccccchhhc
Confidence 53 7999999987644 3678999999999999999 899999999999999 8888888899999999999998
Q ss_pred cCCCccEEEEe----------ccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCC
Q 001319 504 HKENIQFIFST----------AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESE 573 (1101)
Q Consensus 504 ~~~~~~~l~s~----------~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~ 573 (1101)
| +|++|+.+ ..++.+++|++.+.+... +..+...+..++|+|||++|++++. ++.+.+||...
T Consensus 137 p--dg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~-~~~~~~~~~~~~~spdg~~l~~~s~----~~~~~~~d~~~ 209 (360)
T d1k32a3 137 D--NSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFA-ATTENSHDYAPAFDADSKNLYYLSY----RSLDPSPDRVV 209 (360)
T ss_dssp T--TSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEE-CSCSSSBEEEEEECTTSCEEEEEES----CCCCCEECSSS
T ss_pred c--ceeeeeeeccccccceeeccccceeeeccccCceee-ecccccccccccccCCCCEEEEEeC----CCceEcccccc
Confidence 7 66788754 345679999998765544 4456667889999999999999885 77888998765
Q ss_pred Ce
Q 001319 574 GT 575 (1101)
Q Consensus 574 ~~ 575 (1101)
..
T Consensus 210 ~~ 211 (360)
T d1k32a3 210 LN 211 (360)
T ss_dssp SC
T ss_pred cc
Confidence 43
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=4.3e-26 Score=244.25 Aligned_cols=269 Identities=11% Similarity=0.066 Sum_probs=211.2
Q ss_pred ccccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEE
Q 001319 401 IFKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 401 ~~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
++.||..+|++++|+| |++|+.||+|++||+.++ ..+|...|.+++|++++. +++++.|++|++|
T Consensus 8 ~l~gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------~~~h~~~V~~~~~~~~~~---~~s~s~D~~v~~w 72 (287)
T d1pgua2 8 TISGHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------HQDHSNLIVSLDNSKAQE---YSSISWDDTLKVN 72 (287)
T ss_dssp EECCCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------ECCCCSCEEEEECCSTTC---CEEEETTTEEEET
T ss_pred EECCCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------CCCCCCCEEEEEecCCCe---EEEEeeccccccc
Confidence 5899999999999998 999999999999998763 358999999999997765 7999999999999
Q ss_pred EcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 481 ELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 481 d~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+.... .....+..+++.+ ++..+++ +.++.+.+|+..+......+.... ...++++++..+++++.
T Consensus 73 ~~~~~------~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~-- 138 (287)
T d1pgua2 73 GITKH------EFGSQPKVASANN--DGFTAVL-TNDDDLLILQSFTGDIIKSVRLNS---PGSAVSLSQNYVAVGLE-- 138 (287)
T ss_dssp TEEEE------ECSSCEEEEEECS--SSEEEEE-ETTSEEEEEETTTCCEEEEEECSS---CEEEEEECSSEEEEEET--
T ss_pred ccccc------ccccceeeeeecc--CCceEEE-eecccceeeeccceeeeeeccccc---eeeeeeccCcceeeecc--
Confidence 93211 1234566777655 4455554 556678889988877776655443 24567788888888875
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKE 640 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~ 640 (1101)
.++.+++|++...+....+.......+.+++|+|++.+|++|+.||.|++||+.+++..... ...+...|.+++|+|.
T Consensus 139 -~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~-~~~h~~~v~~~~~~p~ 216 (287)
T d1pgua2 139 -EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSR-WAFRTSKINAISWKPA 216 (287)
T ss_dssp -TTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECC-SCCCSSCEEEEEECCC
T ss_pred -ccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccc-ccccccccceeeeccc
Confidence 24579999998877777776655558999999999999999999999999999988765542 1233457999999874
Q ss_pred ----------CCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCC
Q 001319 641 ----------GNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVR 710 (1101)
Q Consensus 641 ----------g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~ 710 (1101)
+.++++|+.|++|++|++..+...+..+
T Consensus 217 ~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~------------------------------------------ 254 (287)
T d1pgua2 217 EKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKAL------------------------------------------ 254 (287)
T ss_dssp C------CCSCCEEEEEETTSCEEEEESSCTTCCEEET------------------------------------------
T ss_pred ccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEe------------------------------------------
Confidence 4689999999999999987653322222
Q ss_pred CCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEe
Q 001319 711 PSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKW 766 (1101)
Q Consensus 711 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~ 766 (1101)
.+|...|.+++|++++. +++++.||.|++|++
T Consensus 255 -----------------------~~h~~~V~~v~~~~~~~-l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 255 -----------------------NAHKDGVNNLLWETPST-LVSSGADACIKRWNV 286 (287)
T ss_dssp -----------------------TSSTTCEEEEEEEETTE-EEEEETTSCEEEEEE
T ss_pred -----------------------CCCCCCeEEEEECCCCE-EEEEECCCeEEEEEE
Confidence 34888999999999874 899999999999985
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.8e-26 Score=253.65 Aligned_cols=286 Identities=12% Similarity=0.114 Sum_probs=206.8
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC-CCE
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD-GNY 420 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd-g~~ 420 (1101)
+|.+.|++|+|||+|+ +||+|+.||+|+|||+.++..... .....+|.++|.+++|+|+ +.+
T Consensus 9 ~h~d~I~~l~fsp~~~-~L~s~s~Dg~v~iwd~~~~~~~~~----------------~~~~~~h~~~V~~v~f~~~~~~~ 71 (342)
T d1yfqa_ 9 APKDYISDIKIIPSKS-LLLITSWDGSLTVYKFDIQAKNVD----------------LLQSLRYKHPLLCCNFIDNTDLQ 71 (342)
T ss_dssp CCSSCEEEEEEEGGGT-EEEEEETTSEEEEEEEETTTTEEE----------------EEEEEECSSCEEEEEEEESSSEE
T ss_pred CCCCCEEEEEEeCCCC-EEEEEECCCeEEEEEccCCCcceE----------------EEEecCCCCCEEEEEEeCCCCCE
Confidence 4999999999999998 568999999999999987654321 0123469999999999996 458
Q ss_pred EEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCcee----EEeecCCc
Q 001319 421 VGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKL----FNFEGHEA 495 (1101)
Q Consensus 421 las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~----~~~~~h~~ 495 (1101)
|++|+.|+.|++|++..+...... ...+........+.+++. .+++++.|+++++|| ..+... .....+..
T Consensus 72 l~sg~~d~~v~~w~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~ 147 (342)
T d1yfqa_ 72 IYVGTVQGEILKVDLIGSPSFQAL--TNNEANLGICRICKYGDD--KLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEETTSCEEEECSSSSSSEEEC--BSCCCCSCEEEEEEETTT--EEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EEEcccccceeeeecccccccccc--cccccccccccccccccc--cccccccccccceeeccccccceeeecccccccc
Confidence 999999999999999987765521 223333445555666666 799999999999999 433322 22222222
Q ss_pred --CeEEEecccCCCccEEEEeccCCeEEEEecCCCCeee---eccCCCCceEEEEE-ccCCCEEEEeecCCCCCceEEEE
Q 001319 496 --PVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRV---DYDAPGHWCTTMLY-SADGSRLFSCGTSKDGDSFLVEW 569 (1101)
Q Consensus 496 --~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~---~~~~~~~~v~~~~~-s~d~~~l~~~~~~~~~~~~i~iw 569 (1101)
......+.+ ++..+++++.|+.|++|++....... ........+.+..+ ..++..+++++. ++.+.+|
T Consensus 148 ~~~~~~~~~~~--~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~----dg~~~v~ 221 (342)
T d1yfqa_ 148 KVKNKIFTMDT--NSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSI----DGRVAVE 221 (342)
T ss_dssp SSCCCEEEEEE--CSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEET----TSEEEEE
T ss_pred cceeeeeeeec--cCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecC----CCeEEEE
Confidence 223333433 45689999999999999997765432 22233334555554 456778888775 8899999
Q ss_pred eCCCCeeE------EEe---------cccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCe
Q 001319 570 NESEGTIK------RTY---------AGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPR 634 (1101)
Q Consensus 570 d~~~~~~~------~~~---------~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~ 634 (1101)
+....... ..+ .+| ...+.+++|+|++++|++|+.||.|++||+.+++.+..+.... .+..
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~---~~~~ 297 (342)
T d1yfqa_ 222 FFDDQGDDYNSSKRFAFRCHRLNLKDTNL-AYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFN---EDSV 297 (342)
T ss_dssp ECCTTCCSTTCTTCEEEECCCCCTTCCSS-CCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCS---SSEE
T ss_pred EecCCcceeeccccceeeeeeeccCCCcc-cccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCC---CCEE
Confidence 87643211 111 112 2257889999999999999999999999999999988775432 4567
Q ss_pred eEEecCCCEEEEEEcCCcEEEEEc
Q 001319 635 LRFSKEGNLLAVTTADNGFKILAN 658 (1101)
Q Consensus 635 v~~s~~g~~l~~~~~d~~i~iwd~ 658 (1101)
++|+|+|+++++++.|+.+++|..
T Consensus 298 ~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 298 VKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp EEEEECSSEEEEEEECTHHHHCSS
T ss_pred EEEEeCCCEEEEEEcCCcEEEeee
Confidence 899999999999999988777754
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.95 E-value=4.6e-25 Score=236.40 Aligned_cols=279 Identities=16% Similarity=0.260 Sum_probs=215.5
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
..+|...|+|++ +||++||+|+.||+|+|||+.++++++ ++.+|.+.|++++| +++ +|++|+.|+.|++|+
T Consensus 11 ~~~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~~~~~---~l~~H~~~V~~v~~--~~~--~l~s~s~D~~i~~~~ 81 (293)
T d1p22a2 11 RSETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTLECKR---ILTGHTGSVLCLQY--DER--VIITGSSDSTVRVWD 81 (293)
T ss_dssp CCSSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSCCEEE---EECCCSSCEEEEEC--CSS--EEEEEETTSCEEEEE
T ss_pred cCCCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCCcEEE---EEecCCCCEeeeec--ccc--eeecccccccccccc
Confidence 567888999865 589999999999999999999998776 78899999999987 566 899999999999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCee---eeccCCCCceEEEEEccCCCEEEEee
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSR---VDYDAPGHWCTTMLYSADGSRLFSCG 557 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~~s~d~~~l~~~~ 557 (1101)
..+........+......... ....++++..++.+++|+....... ..+..+...+..+.+.+ ..+++++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s 155 (293)
T d1p22a2 82 VNTGEMLNTLIHHCEAVLHLRF----NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSAS 155 (293)
T ss_dssp SSSCCEEEEECCCCSCEEEEEC----CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEE
T ss_pred cccccccccccccccccccccc----cccceeecccccceeEeeccccccccccccccccccccccceecc--ccccccc
Confidence 777777666655555544432 2357889999999999998876543 34455666677666654 4666666
Q ss_pred cCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEE
Q 001319 558 TSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRF 637 (1101)
Q Consensus 558 ~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~ 637 (1101)
. ++.|++||..+++.+..+.++.. .+..+.++ +.++++++.||.|++||+.+...+.....+.. .+ ..+
T Consensus 156 ~----d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~--~v--~~~ 224 (293)
T d1p22a2 156 G----DRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVLEGHEE--LV--RCI 224 (293)
T ss_dssp T----TSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECCCSS--CE--EEE
T ss_pred C----CCceeeecCCCCcEEEEEccccc-ccccccCC--CCeEEEecCCCEEEEEecccceeeeeecccce--ee--eec
Confidence 4 89999999999999999988766 56555554 67999999999999999999998888765543 33 456
Q ss_pred ecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEE
Q 001319 638 SKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILA 717 (1101)
Q Consensus 638 s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~ 717 (1101)
++++.+|++++.||.|++||+....... .....
T Consensus 225 ~~~~~~l~sg~~dg~i~iwd~~~~~~~~-~~~~~---------------------------------------------- 257 (293)
T d1p22a2 225 RFDNKRIVSGAYDGKIKVWDLVAALDPR-APAGT---------------------------------------------- 257 (293)
T ss_dssp ECCSSEEEEEETTSCEEEEEHHHHTSTT-SCTTT----------------------------------------------
T ss_pred cccceEEEEEcCCCEEEEEECCCCcccc-ccCCc----------------------------------------------
Confidence 7789999999999999999987652211 11000
Q ss_pred EEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEE
Q 001319 718 EIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWK 765 (1101)
Q Consensus 718 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~ 765 (1101)
.....+ .+|...|.+++| ++.+|++++.||+|++||
T Consensus 258 -------~~~~~~---~~H~~~V~~v~~--d~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 258 -------LCLRTL---VEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293 (293)
T ss_dssp -------TEEEEE---CCCSSCCCCEEE--CSSCEEECCSSSEEEEEC
T ss_pred -------eeeEEe---cCCCCCEEEEEE--cCCEEEEEecCCEEEEeC
Confidence 000011 348888888888 467899999999999996
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=2.5e-25 Score=249.98 Aligned_cols=283 Identities=12% Similarity=0.133 Sum_probs=205.1
Q ss_pred cCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEE------EEEc
Q 001319 342 HQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSR------VAWS 415 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~------~~~s 415 (1101)
+|.+.|+++++++ + +++||+.|++|+|||..+.+........ .....|...+.. +..+
T Consensus 12 ~H~~~I~~v~~~~--~-~l~S~S~D~~iriWd~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~ 75 (393)
T d1sq9a_ 12 AHDADIFSVSACN--S-FTVSCSGDGYLKVWDNKLLDNENPKDKS-------------YSHFVHKSGLHHVDVLQAIERD 75 (393)
T ss_dssp CSSSCEEEEEECS--S-EEEEEETTSEEEEEESBCCTTCCGGGGE-------------EEEECCTTCEEEEEEEEEEETT
T ss_pred cccCccEEEEEeC--C-EEEEEECCCeEEEEECCCCCCCccccee-------------EeeeeccCCceEeeeEeeeccC
Confidence 5999999999976 3 4689999999999998765532210000 011223333322 2222
Q ss_pred c-CCCEEEEEECCCeEEEEeecCCccccccee-------eecccCcEEEEEEecCCC---ceEEEEecCCceEEEEE-cC
Q 001319 416 P-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQ-------IDAHVGAVNDLAFAYPNK---LLCVVTCGDDKLIKVWE-LS 483 (1101)
Q Consensus 416 p-dg~~las~~~d~~i~vwd~~~~~~~~~~~~-------l~~h~~~V~~l~~s~d~~---~~~l~s~~~d~~v~iwd-~~ 483 (1101)
. ++.++++++.||.|++|++........... ...+...+..++|.+++. ..++++++.|+++++|+ ..
T Consensus 76 ~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~ 155 (393)
T d1sq9a_ 76 AFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155 (393)
T ss_dssp TEEEEEEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEES
T ss_pred CCCCcEEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeec
Confidence 2 345788999999999999876654332111 123556788899988742 12789999999999999 32
Q ss_pred -Cce-----------------eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee------ccCCCC
Q 001319 484 -GRK-----------------LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD------YDAPGH 539 (1101)
Q Consensus 484 -~~~-----------------~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~------~~~~~~ 539 (1101)
+.. ......+...+.+++|++ ++ +|++|+.|++|++||+.+++.... +..|..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~ 232 (393)
T d1sq9a_ 156 FADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISE--RG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSN 232 (393)
T ss_dssp SSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECT--TS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCC
T ss_pred CCcccceeeeeeccceecccceecccCCCCcEEEEEECC--CC-EEEEEeCCCcEEEEeecccccccccccccccccccc
Confidence 110 111233556688999977 44 899999999999999998876543 345777
Q ss_pred ceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec-------------ccCCcceEEEEEeCCCCEEEEEeCC
Q 001319 540 WCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA-------------GFRKKSNGVVQFDTTQNHFLAVGED 606 (1101)
Q Consensus 540 ~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~-------------~~~~~~v~~~~~~~~~~~l~~~~~d 606 (1101)
.|.+++|+|||++|++++.+. ..+.|++||+++++.+..+. +|.. .|.+++|+|++++|++++.|
T Consensus 233 ~V~~l~~spdg~~l~sgs~D~-t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~-~V~~l~fspd~~~l~S~s~D 310 (393)
T d1sq9a_ 233 SIRSVKFSPQGSLLAIAHDSN-SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSS-WVMSLSFNDSGETLCSAGWD 310 (393)
T ss_dssp CEEEEEECSSTTEEEEEEEET-TEEEEEEEETTTCCEEEEECBC--------CCBSBSS-CEEEEEECSSSSEEEEEETT
T ss_pred eEEEcccccccceeeeecCCC-CcceeeecccccceeeeeeccccccccceeeeecccC-ceeeeccCCCCCeeEEECCC
Confidence 999999999999999998621 12469999999999888775 5665 79999999999999999999
Q ss_pred CcEEEEECCCCeeeEeeccCCCCCCCC----eeEEecCCCEEEEE
Q 001319 607 SQIKFWDMDNVNILTSTDAEGGLPNLP----RLRFSKEGNLLAVT 647 (1101)
Q Consensus 607 g~i~iwd~~~~~~~~~~~~~~~~~~v~----~v~~s~~g~~l~~~ 647 (1101)
++|++||+.+++++.++..|.. .|. .++|+|++..++++
T Consensus 311 ~~v~vWd~~~g~~~~~l~gH~~--~v~~~~~~~~~~~~~~~~~~~ 353 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLNMHCD--DIEIEEDILAVDEHGDSLAEP 353 (393)
T ss_dssp SEEEEEETTTTEEEEEEECCGG--GCSSGGGCCCBCTTSCBCSSC
T ss_pred CEEEEEECCCCCEEEEECCcCC--cccCCccEEEECCCCCEEEEc
Confidence 9999999999999999987643 343 47788888776644
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.94 E-value=2e-26 Score=255.99 Aligned_cols=196 Identities=13% Similarity=0.056 Sum_probs=162.1
Q ss_pred EEEEcc-CCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-CC-ceEEEEEcCCcee
Q 001319 411 RVAWSP-DGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG-DD-KLIKVWELSGRKL 487 (1101)
Q Consensus 411 ~~~~sp-dg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~-~d-~~v~iwd~~~~~~ 487 (1101)
.-.||| ||+++|+++ +|.|++||++++...+ + +|...|.+++|+|||+ .|++++ .+ ..|++||..+..+
T Consensus 7 ~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~----~-~~~~~v~~~~~spDg~--~l~~~~~~~g~~v~v~d~~~~~~ 78 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLK----V-PEPLRIRYVRRGGDTK--VAFIHGTREGDFLGIYDYRTGKA 78 (360)
T ss_dssp EEEEEECGGGCEEEEE-TTEEEEECTTSSBEEE----C-SCCSCEEEEEECSSSE--EEEEEEETTEEEEEEEETTTCCE
T ss_pred cccccCCCCCEEEEEE-CCeEEEEECCCCcEEE----c-cCCCCEEEEEECCCCC--EEEEEEcCCCCEEEEEECCCCcE
Confidence 356999 999999986 4689999999876543 2 6999999999999999 455444 33 4799999666667
Q ss_pred EEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC------CC
Q 001319 488 FNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KD 561 (1101)
Q Consensus 488 ~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~------~~ 561 (1101)
..+..|...|.+++|+| +|++|++++.++.+++|++.+......+..+...+.+++|+|||++|+.+... ..
T Consensus 79 ~~~~~~~~~v~~~~~sp--dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~ 156 (360)
T d1k32a3 79 EKFEENLGNVFAMGVDR--NGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGY 156 (360)
T ss_dssp EECCCCCCSEEEEEECT--TSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSC
T ss_pred EEeeCCCceEEeeeecc--cccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeec
Confidence 78889999999999987 67899999999999999999999888888888889999999999999876531 23
Q ss_pred CCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCe
Q 001319 562 GDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVN 618 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~ 618 (1101)
.++.+++||..+++........ . .+..++|+|+|++|++++.++.+.+|+.....
T Consensus 157 ~~~~~~v~d~~~~~~~~~~~~~-~-~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~~ 211 (360)
T d1k32a3 157 VMQAIHVYDMEGRKIFAATTEN-S-HDYAPAFDADSKNLYYLSYRSLDPSPDRVVLN 211 (360)
T ss_dssp CEEEEEEEETTTTEEEECSCSS-S-BEEEEEECTTSCEEEEEESCCCCCEECSSSSC
T ss_pred cccceeeeccccCceeeecccc-c-ccccccccCCCCEEEEEeCCCceEcccccccc
Confidence 4667999999998776554433 2 57778999999999999999999999876543
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.93 E-value=1.1e-24 Score=246.06 Aligned_cols=363 Identities=11% Similarity=0.007 Sum_probs=261.2
Q ss_pred CCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee--cc---
Q 001319 462 PNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YD--- 535 (1101)
Q Consensus 462 d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~--- 535 (1101)
+..++++++.+.|++|.||| .+++++..+..+. .+..++|+| ||+++++++.|++|++||+.+.+.... +.
T Consensus 29 ~~~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSp--DG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~ 105 (432)
T d1qksa2 29 DLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSA--SGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS 105 (432)
T ss_dssp CGGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECT--TSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS
T ss_pred CCCcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECC--CCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCC
Confidence 44444679999999999999 9999999998774 589999987 779999999999999999988764332 22
Q ss_pred CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECC
Q 001319 536 APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMD 615 (1101)
Q Consensus 536 ~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~ 615 (1101)
.+.+.+.+..|+|||+++++.+. .++.|.+||..+++.+..+..+.. .+....+.+++.
T Consensus 106 ~~~~~~~s~~~SpDG~~l~vs~~---~~~~v~i~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~----------------- 164 (432)
T d1qksa2 106 EARSIETSKMEGWEDKYAIAGAY---WPPQYVIMDGETLEPKKIQSTRGM-TYDEQEYHPEPR----------------- 164 (432)
T ss_dssp EEEEEEECCSTTCTTTEEEEEEE---ETTEEEEEETTTCCEEEEEECCEE-CTTTCCEESCCC-----------------
T ss_pred CCCCeEEecccCCCCCEEEEEcC---CCCeEEEEeCccccceeeeccCCc-cccceeccCCCc-----------------
Confidence 23334556677889998754433 388999999999999988876543 222233444332
Q ss_pred CCeeeEeeccCCCCCCCCeeEEecCCCEEEE-EEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccc
Q 001319 616 NVNILTSTDAEGGLPNLPRLRFSKEGNLLAV-TTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVS 694 (1101)
Q Consensus 616 ~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~-~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~ 694 (1101)
...+.++|+|..+++ ...++.|.+|+..+..
T Consensus 165 ----------------~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~-------------------------------- 196 (432)
T d1qksa2 165 ----------------VAAILASHYRPEFIVNVKETGKILLVDYTDLN-------------------------------- 196 (432)
T ss_dssp ----------------EEEEEECSSSSEEEEEETTTTEEEEEETTCSS--------------------------------
T ss_pred ----------------eeEEEECCCCCEEEEEEccCCeEEEEEccCCC--------------------------------
Confidence 234567788776554 4456788888765431
Q ss_pred cCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCC
Q 001319 695 SGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPS 774 (1101)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~ 774 (1101)
..+++.+.
T Consensus 197 -----------------------------------------------------------------~~~~~~i~------- 204 (432)
T d1qksa2 197 -----------------------------------------------------------------NLKTTEIS------- 204 (432)
T ss_dssp -----------------------------------------------------------------EEEEEEEE-------
T ss_pred -----------------------------------------------------------------cceEEEEc-------
Confidence 00111111
Q ss_pred CCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeC-----CCCC
Q 001319 775 GKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMS-----PPPA 847 (1101)
Q Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~-----~~~~ 847 (1101)
+......++|+|||+++++++ ++.+.++|..+++....+.. |...
T Consensus 205 ----------------------------~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~ 256 (432)
T d1qksa2 205 ----------------------------AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGR 256 (432)
T ss_dssp ----------------------------CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTT
T ss_pred ----------------------------ccCccccceECCCCCEEEEeccccceEEEeecccceEEEEeccCccccccCc
Confidence 334467889999999887776 57799999999888877653 3334
Q ss_pred eeEEEEecCCCCEEEEEe-CCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccce
Q 001319 848 STFLAFHPQDNNIIAIGT-EDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSV 926 (1101)
Q Consensus 848 i~~l~~s~~~~~~la~g~-~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~ 926 (1101)
.....+.. .+...++.. .++.|.+|+..... ...|...|....+++++..+++++.+.+.++|+..+.....
T Consensus 257 ~~~~~~~~-~g~~~~~~~lg~~~v~~~~~~~~~----~~~~~~~v~~~~~~~~g~~~~~~s~p~~~~lw~~~~~~~~~-- 329 (432)
T d1qksa2 257 GANFVHPT-FGPVWATSHMGDDSVALIGTDPEG----HPDNAWKILDSFPALGGGSLFIKTHPNSQYLYVDATLNPEA-- 329 (432)
T ss_dssp CEEEEETT-TEEEEEEEBSSSSEEEEEECCTTT----CTTTBTSEEEEEECSCSCCCCEECCTTCSEEEEECTTCSSH--
T ss_pred ccceecCC-CCceecccccCCceEEeccccccc----ccccccEEEEEEEcCCCCeEEEEecCCccceeecccCCCCC--
Confidence 44455544 555555543 47889999866542 35677889999999999999999999999999877643211
Q ss_pred EEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEe-----C
Q 001319 927 TIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATF-----C 1000 (1101)
Q Consensus 927 ~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~-----~ 1000 (1101)
.....+++ ||++.++++ .|+.+++|++.++..+. .|...|..++|||||++|+.+. .
T Consensus 330 ----------~~~~sv~v-pDg~~la~~s~d~~~k~w~~~~~~~l~------~~~~~v~~~~fS~DG~~v~~S~~~~~~~ 392 (432)
T d1qksa2 330 ----------EISGSVAV-FDIKAMTGDGSDPEFKTLPIAEWAGIT------EGQPRVVQGEFNKDGTEVWFSVWNGKDQ 392 (432)
T ss_dssp ----------HHHTCEEE-EEGGGCCCSSSCCCEEEECHHHHHTCC------SSCCEEEEEEECTTSSEEEEEEECCTTS
T ss_pred ----------CeeeEEEE-EechhhcccccCCceEecccccccccC------CCCCcEEEeEECCCCCEEEEEEecCCCC
Confidence 12334555 899999985 58999999986654332 2366799999999999886553 4
Q ss_pred CCcEEEEeCCCCceeEeeCC
Q 001319 1001 DGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 1001 dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+|.|.|||.+++++...+..
T Consensus 393 ~g~i~i~D~~T~k~~~~i~~ 412 (432)
T d1qksa2 393 ESALVVVDDKTLELKHVIKD 412 (432)
T ss_dssp CCEEEEEETTTTEEEEEECC
T ss_pred CCcEEEEECCCceEEeEecC
Confidence 78899999999999888864
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.93 E-value=1.6e-24 Score=237.91 Aligned_cols=325 Identities=12% Similarity=0.094 Sum_probs=232.1
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee---ccCCCCceEEEEEccCCC-EEEEeecCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD---YDAPGHWCTTMLYSADGS-RLFSCGTSK 560 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~---~~~~~~~v~~~~~s~d~~-~l~~~~~~~ 560 (1101)
+.+....+|++.|++|+|+| ++++|++++.||+|++||++....... ...|...|.+++|+|++. ++++++.
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp--~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~-- 77 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIP--SKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTV-- 77 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEG--GGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEET--
T ss_pred CeEEcCCCCCCCEEEEEEeC--CCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEccc--
Confidence 34666789999999999988 568999999999999999987654332 235788999999998754 6777775
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeee----EeeccCCCCCCCCeeE
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNIL----TSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~----~~~~~~~~~~~v~~v~ 636 (1101)
++.|++|+...+........+.........+.++...+++++.++.+++||++.+... ................
T Consensus 78 --d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 78 --QGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp --TSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred --ccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeee
Confidence 8999999999988888877776655666777788899999999999999998654322 2222222223446677
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
+.+++..+++++.|+.|++|++............
T Consensus 156 ~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~---------------------------------------------- 189 (342)
T d1yfqa_ 156 MDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEE---------------------------------------------- 189 (342)
T ss_dssp EEECSSEEEEEESTTEEEEEESSCCTTCCCEEEE----------------------------------------------
T ss_pred eeccCCceeeecCCCcEEEEecccCcccceeeee----------------------------------------------
Confidence 8889999999999999999998765221110000
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEE-EEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCcccee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVV-RLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMA 795 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 795 (1101)
......+. ...+..++..+++++.||.+.+|++................ ...
T Consensus 190 -----------------~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~----------~~~ 242 (342)
T d1yfqa_ 190 -----------------SGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR----------CHR 242 (342)
T ss_dssp -----------------CSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEE----------CCC
T ss_pred -----------------cccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceee----------eee
Confidence 00122222 33445567788899999999999986543322111100000 000
Q ss_pred eccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 796 NDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 796 ~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
.......|...+.+++|+|++++||+|+ ||.|++||+.+++.+..+..+ ..+..++|+| ++++|++++.|+.+++|.
T Consensus 243 ~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~-~~~~~~~~s~-~~~~l~~a~sdd~~~~~~ 320 (342)
T d1yfqa_ 243 LNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF-NEDSVVKIAC-SDNILCLATSDDTFKTNA 320 (342)
T ss_dssp CCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC-SSSEEEEEEE-CSSEEEEEEECTHHHHCS
T ss_pred eccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCC-CCCEEEEEEe-CCCEEEEEEcCCcEEEee
Confidence 1111224778899999999999999998 899999999999999888643 3566788888 889999999999888875
Q ss_pred eecceEEEeeccCCCCeeEE
Q 001319 875 VRVDEVKSKLKGHQKRITGL 894 (1101)
Q Consensus 875 ~~~~~~~~~~~~h~~~V~~l 894 (1101)
... ..+..|...|..+
T Consensus 321 ~~~----~~~~~~~~~i~~~ 336 (342)
T d1yfqa_ 321 AID----QTIELNASSIYII 336 (342)
T ss_dssp SSC----TTSCCCCCEEEEE
T ss_pred eeC----CCccCCCCeEEEE
Confidence 432 2345566666543
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.93 E-value=1.6e-23 Score=237.47 Aligned_cols=358 Identities=10% Similarity=0.034 Sum_probs=247.1
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY 580 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~ 580 (1101)
.+..+..+.++++.+.||+|++||+.+++.+..+..+. .+..++|||||+++++++. ++.|++||+.+++.....
T Consensus 25 ~~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~----d~~v~vwd~~t~~~~~~~ 99 (426)
T d1hzua2 25 LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGY-AVHISRMSASGRYLLVIGR----DARIDMIDLWAKEPTKVA 99 (426)
T ss_dssp CSCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCS-SEEEEEECTTSCEEEEEET----TSEEEEEETTSSSCEEEE
T ss_pred cccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEeC----CCCEEEEEccCCceeEEE
Confidence 34444444567889999999999999999988887764 5899999999999999875 789999999988754433
Q ss_pred --c---ccCCcceEEEEEeCCCCEEEEE-eCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEE-EEEEcCCcE
Q 001319 581 --A---GFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLL-AVTTADNGF 653 (1101)
Q Consensus 581 --~---~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l-~~~~~d~~i 653 (1101)
. ++.. .+.+++|+|||++++++ ..++.+.+||..++........+.. .+....+.+++... ++.+.|+..
T Consensus 100 ~i~~~~~~~~-~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~i~~s~d~~~ 176 (426)
T d1hzua2 100 EIKIGIEARS-VESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGM--TVDTQTYHPEPRVAAIIASHEHPE 176 (426)
T ss_dssp EEECCSEEEE-EEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEE--CSSSCCEESCCCEEEEEECSSSSE
T ss_pred EEeCCCCCcc-eEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCC--CccceeecCCCceeEEEECCCCCE
Confidence 2 2222 34456778899998665 5899999999999998888876644 56677788777643 455566665
Q ss_pred EEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCC
Q 001319 654 KILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPES 733 (1101)
Q Consensus 654 ~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 733 (1101)
.++.....
T Consensus 177 ~~~~~~~~------------------------------------------------------------------------ 184 (426)
T d1hzua2 177 FIVNVKET------------------------------------------------------------------------ 184 (426)
T ss_dssp EEEEETTT------------------------------------------------------------------------
T ss_pred EEEecCCC------------------------------------------------------------------------
Confidence 55543221
Q ss_pred CCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEec
Q 001319 734 TDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALS 813 (1101)
Q Consensus 734 ~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s 813 (1101)
+.+.+++.... ....... . .+...+..++++
T Consensus 185 -------------------------~~i~~~~~~~~-------------------~~~~~~~--~---~~~~~~~~~~~~ 215 (426)
T d1hzua2 185 -------------------------GKVLLVNYKDI-------------------DNLTVTS--I---GAAPFLADGGWD 215 (426)
T ss_dssp -------------------------TEEEEEECSSS-------------------SSCEEEE--E---ECCSSEEEEEEC
T ss_pred -------------------------CeEEEEEeccc-------------------cceeeEE--e---ccCCccEeeeEC
Confidence 00000000000 0000000 0 155668889999
Q ss_pred CCCCeEEEEc--CCeEEEEECCCceEEEEeeCC--CCCeeEEEEecCCCCEE--EEEeCCCcEEEEEeec-------ceE
Q 001319 814 KNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP--PPASTFLAFHPQDNNII--AIGTEDSTIHIYNVRV-------DEV 880 (1101)
Q Consensus 814 ~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~--~~~i~~l~~s~~~~~~l--a~g~~dg~v~iwd~~~-------~~~ 880 (1101)
|++++++++. ++.+.+++..+++.+...... ........+.......+ +..+.|+.+.+|+... ++.
T Consensus 216 ~~g~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~ 295 (426)
T d1hzua2 216 SSHRYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKK 295 (426)
T ss_dssp TTSCEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSE
T ss_pred CCCcEEEeeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceE
Confidence 9999888776 577999999999988776542 22333444444122222 2334578888887654 377
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEE-------EeCCCcEEEEECCCCccccceEEee---cCCCCCCCcceEEEcCCCCE
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVS-------SGADAQLCVWSIDTWEKRKSVTIHI---PAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s-------~s~Dg~v~lwd~~~~~~~~~~~~~~---~~~~~~~~v~~~~~s~d~~~ 950 (1101)
...+.+|...+..++|+||+++|++ ++.|++|++||+.+++......... ........+.+++|||||++
T Consensus 296 ~~~l~g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~ 375 (426)
T d1hzua2 296 VAELQGQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDE 375 (426)
T ss_dssp EEEEECSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSE
T ss_pred eEEEecCCCceeEEEcCCCCceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCE
Confidence 8889999999999999999999994 5568999999999988654432110 01111256888999999998
Q ss_pred EEEE------eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEE
Q 001319 951 MLVV------HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF 996 (1101)
Q Consensus 951 l~~~------~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~ 996 (1101)
++++ .++.|+|||..+++....+.... .++|+|+|-+
T Consensus 376 i~vs~~~~~~~~~~i~v~D~~T~k~~~~i~~~~---------~~tp~Gk~~~ 418 (426)
T d1hzua2 376 VWFSVWNGKNDSSALVVVDDKTLKLKAVVKDPR---------LITPTGKFNV 418 (426)
T ss_dssp EEEEECCCTTSCCEEEEEETTTTEEEEEECCTT---------CCSEEEEEEH
T ss_pred EEEEEecCCCCCCeEEEEECCCCeEEEEECCCC---------ccCCCceEeE
Confidence 7542 26789999999999988887541 3467887744
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.89 E-value=6.4e-21 Score=204.91 Aligned_cols=267 Identities=10% Similarity=0.050 Sum_probs=212.2
Q ss_pred eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE-EEECCCeEEEEeec
Q 001319 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG-VAFTKHLIQLYSYA 436 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la-s~~~d~~i~vwd~~ 436 (1101)
|+.++++.|++|.|||+.+++.+.. +. ....+..++|||||++|+ +++.++.|++||+.
T Consensus 3 ~~yV~~~~~~~v~v~D~~t~~~~~~-------------------i~-~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~ 62 (301)
T d1l0qa2 3 FAYIANSESDNISVIDVTSNKVTAT-------------------IP-VGSNPMGAVISPDGTKVYVANAHSNDVSIIDTA 62 (301)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEE-------------------EE-CSSSEEEEEECTTSSEEEEEEGGGTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCCeEEEE-------------------EE-CCCCceEEEEeCCCCEEEEEECCCCEEEEEECC
Confidence 5667888999999999999987652 21 234578999999999885 55678999999999
Q ss_pred CCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccE-EEEe
Q 001319 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQF-IFST 514 (1101)
Q Consensus 437 ~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~-l~s~ 514 (1101)
+++.+. .+..|. .+..++|++++.. +++++..++.+.+|+ .+++....+..+ ....+++++++ +.. ++++
T Consensus 63 t~~~~~---~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d--g~~~~~~~ 134 (301)
T d1l0qa2 63 TNNVIA---TVPAGS-SPQGVAVSPDGKQ-VYVTNMASSTLSVIDTTSNTVAGTVKTG-KSPLGLALSPD--GKKLYVTN 134 (301)
T ss_dssp TTEEEE---EEECSS-SEEEEEECTTSSE-EEEEETTTTEEEEEETTTTEEEEEEECS-SSEEEEEECTT--SSEEEEEE
T ss_pred CCceee---eeeccc-ccccccccccccc-ccccccccceeeecccccceeeeecccc-ccceEEEeecC--CCeeeeee
Confidence 988766 455555 4689999999986 667788889999999 777777777654 45678888774 444 4667
Q ss_pred ccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEe
Q 001319 515 AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD 594 (1101)
Q Consensus 515 ~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~ 594 (1101)
..++.+.+|+..+......+... ..+..++++++++.++++.. ..+.+.+|+....+.......+. ....++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 208 (301)
T d1l0qa2 135 NGDKTVSVINTVTKAVINTVSVG-RSPKGIAVTPDGTKVYVANF---DSMSISVIDTVTNSVIDTVKVEA--APSGIAVN 208 (301)
T ss_dssp TTTTEEEEEETTTTEEEEEEECC-SSEEEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEEEECSS--EEEEEEEC
T ss_pred ccccceeeeeccccceeeecccC-CCceEEEeeccccceeeecc---cccccccccccceeeeecccccC--Ccceeecc
Confidence 77899999999888877766544 34788999999999988765 36678889988888877776543 46678999
Q ss_pred CCCCEEEEEe---CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEE-EEEcCCcEEEEEcccc
Q 001319 595 TTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIG 661 (1101)
Q Consensus 595 ~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~i~iwd~~~~ 661 (1101)
++++.+++++ .++.|++||..+++.+..+.... .+.+++|+|||++|+ +++.++.|++||+.++
T Consensus 209 ~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~---~~~~va~spdg~~l~va~~~~~~i~v~D~~t~ 276 (301)
T d1l0qa2 209 PEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGP---DPAGIAVTPDGKKVYVALSFCNTVSVIDTATN 276 (301)
T ss_dssp TTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCS---SEEEEEECTTSSEEEEEETTTTEEEEEETTTT
T ss_pred ccccccccccccceeeeeeeeecCCCeEEEEEcCCC---CEEEEEEeCCCCEEEEEECCCCeEEEEECCCC
Confidence 9999887754 44689999999999988876543 468999999999874 5667899999999887
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.87 E-value=2.3e-20 Score=205.08 Aligned_cols=324 Identities=10% Similarity=-0.008 Sum_probs=224.7
Q ss_pred EEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEE-EeCCCcEEEEECCCCeeeEe
Q 001319 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDNVNILTS 622 (1101)
Q Consensus 544 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~~~~~~~ 622 (1101)
++|+++++++++++. ++.|.+||+.+++.+.++.......+..++|+|||+++++ +..++.|++||+.+++.+..
T Consensus 2 ~a~~~~~~~l~~~~~----~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 2 PALKAGHEYMIVTNY----PNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCCTTCEEEEEEET----TTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred ccCCCCCcEEEEEcC----CCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeee
Confidence 468999999999986 8899999999999999988655546778999999998865 45789999999999998887
Q ss_pred eccCCCC----CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCC
Q 001319 623 TDAEGGL----PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTP 698 (1101)
Q Consensus 623 ~~~~~~~----~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~ 698 (1101)
+...... ..+..++|+|||+++++++.+.....|.
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~----------------------------------------- 116 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDH----------------------------------------- 116 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSC-----------------------------------------
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeee-----------------------------------------
Confidence 7543321 2357899999999998876432211110
Q ss_pred CCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCee
Q 001319 699 ANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKAT 778 (1101)
Q Consensus 699 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~ 778 (1101)
....++.+.+|+........
T Consensus 117 -------------------------------------------------------~~~~~~~i~~~~~~~~~~~~----- 136 (346)
T d1jmxb_ 117 -------------------------------------------------------YVVKPPRLEVFSTADGLEAK----- 136 (346)
T ss_dssp -------------------------------------------------------EEECCCEEEEEEGGGGGGBC-----
T ss_pred -------------------------------------------------------eccCcceEEEEecccceeee-----
Confidence 00112223333322110000
Q ss_pred eeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCC
Q 001319 779 ASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDN 858 (1101)
Q Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~ 858 (1101)
.+... .....+..+.+++++++++. ++.+.+|++.+++.+..+..+ .....+.++| ++
T Consensus 137 --------------~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~ 194 (346)
T d1jmxb_ 137 --------------PVRTF----PMPRQVYLMRAADDGSLYVA--GPDIYKMDVKTGKYTVALPLR-NWNRKGYSAP-DV 194 (346)
T ss_dssp --------------CSEEE----ECCSSCCCEEECTTSCEEEE--SSSEEEECTTTCCEEEEECST-TCCCTTBCCC-BC
T ss_pred --------------EEEee----eccCceEEEEecCCCEEEEe--CCcceEEEccCCCEEEEEecC-CCccceEEec-cc
Confidence 00000 02223445566777776654 356899999999998888764 3456677888 55
Q ss_pred CEE-EEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCC
Q 001319 859 NII-AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPT 937 (1101)
Q Consensus 859 ~~l-a~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~ 937 (1101)
..+ +.+..++.+.+++.. ..+.+....++++..++.+.+|++.++......... +. .
T Consensus 195 ~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-~ 252 (346)
T d1jmxb_ 195 LYFWPHQSPRHEFSMLYTI-----------------ARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD----LT-E 252 (346)
T ss_dssp CCCCCCCCTTCEEEEEEEE-----------------EEC-------CCCEEEEEEEEEETTTCCEEEEEEEE----CS-S
T ss_pred cEEEEEecCCCceEeeeee-----------------eeeccCceeEeeccCCceEEEEECCCCceEEEEeec----cc-c
Confidence 444 444555666665532 122334455667777888999999987754332221 11 5
Q ss_pred CcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEe
Q 001319 938 GDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCY 1017 (1101)
Q Consensus 938 ~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~ 1017 (1101)
.+..+.+++++..++...++.+.+||..+++.+..+.. ...+.+++|||||++|++++.||.|+|||+.+++.+..
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~----~~~~~~va~s~DG~~l~v~~~d~~v~v~D~~t~~~i~~ 328 (346)
T d1jmxb_ 253 LYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL----DHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKN 328 (346)
T ss_dssp CEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC----SSCCCEEEECSSSSCEEEESBSSEEEEEETTTTEEEEE
T ss_pred eeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC----CCCEEEEEEcCCCCEEEEEeCCCcEEEEECccCCEEEE
Confidence 67788999999999888888999999999999888765 45688999999999999999999999999999999998
Q ss_pred eCC
Q 001319 1018 IAP 1020 (1101)
Q Consensus 1018 ~~~ 1020 (1101)
+..
T Consensus 329 i~~ 331 (346)
T d1jmxb_ 329 IKL 331 (346)
T ss_dssp EEC
T ss_pred EEC
Confidence 874
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=1.9e-19 Score=193.19 Aligned_cols=265 Identities=11% Similarity=0.083 Sum_probs=205.0
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCC
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVP 406 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~ 406 (1101)
+|+. ...+++.++.....+..++|||||++|+++++.++.|++||+.+++.+.. +..|.
T Consensus 16 v~D~--~t~~~~~~i~~g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~-------------------~~~~~ 74 (301)
T d1l0qa2 16 VIDV--TSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIAT-------------------VPAGS 74 (301)
T ss_dssp EEET--TTTEEEEEEECSSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEE-------------------EECSS
T ss_pred EEEC--CCCeEEEEEECCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeee-------------------eeccc
Confidence 4544 34567777887788999999999998878888999999999999887652 33343
Q ss_pred ccEEEEEEccCCCEEEEE-ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCC
Q 001319 407 ISVSRVAWSPDGNYVGVA-FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSG 484 (1101)
Q Consensus 407 ~~v~~~~~spdg~~las~-~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~ 484 (1101)
.+..++|++++++++++ ..++.+.+|+..+++... .+ .+.....+++|+||+.. +++++..++.+.+|+ .++
T Consensus 75 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~dg~~-~~~~~~~~~~~~~~~~~~~ 148 (301)
T d1l0qa2 75 -SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAG---TV-KTGKSPLGLALSPDGKK-LYVTNNGDKTVSVINTVTK 148 (301)
T ss_dssp -SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE---EE-ECSSSEEEEEECTTSSE-EEEEETTTTEEEEEETTTT
T ss_pred -cccccccccccccccccccccceeeecccccceeee---ec-cccccceEEEeecCCCe-eeeeeccccceeeeecccc
Confidence 56899999999977655 567789999999987655 33 34556889999999996 567788899999999 788
Q ss_pred ceeEEeecCCcCeEEEecccCCCccEEEEecc-CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCC
Q 001319 485 RKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGD 563 (1101)
Q Consensus 485 ~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~ 563 (1101)
+.+..+..+ ..+..+++++ ++..+++++. ++.+.+|+............ ...+..+++++++..++.+..+ ...
T Consensus 149 ~~~~~~~~~-~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~~v~~~~-~~~ 223 (301)
T d1l0qa2 149 AVINTVSVG-RSPKGIAVTP--DGTKVYVANFDSMSISVIDTVTNSVIDTVKV-EAAPSGIAVNPEGTKAYVTNVD-KYF 223 (301)
T ss_dssp EEEEEEECC-SSEEEEEECT--TSSEEEEEETTTTEEEEEETTTTEEEEEEEC-SSEEEEEEECTTSSEEEEEEEC-SSC
T ss_pred ceeeecccC-CCceEEEeec--cccceeeecccccccccccccceeeeecccc-cCCcceeecccccccccccccc-cee
Confidence 877777654 4577888876 4455655554 56777787766555544443 3457889999999998876542 235
Q ss_pred ceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEE-EEeCCCcEEEEECCCCeeeEeecc
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFL-AVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~-~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
+.|.+||..+++.+..+..+. .+..++|+|||++|+ +++.++.|++||+.+++.+.++..
T Consensus 224 ~~v~v~D~~t~~~~~~~~~~~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~v 284 (301)
T d1l0qa2 224 NTVSMIDTGTNKITARIPVGP--DPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAV 284 (301)
T ss_dssp CEEEEEETTTTEEEEEEECCS--SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred eeeeeeecCCCeEEEEEcCCC--CEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEeC
Confidence 789999999999998887643 478899999999875 667899999999999999988864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=4.8e-20 Score=201.54 Aligned_cols=293 Identities=12% Similarity=0.098 Sum_probs=197.0
Q ss_pred CEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEE-EEEcCCcEEEEEccccccccccccCCCcccc
Q 001319 598 NHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLA-VTTADNGFKILANAIGLRSLRAVENPPFEAL 676 (1101)
Q Consensus 598 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 676 (1101)
+++++++.|++|++||+.+++.+..+..+.....+..++|+|||++++ +++.++.|.+||+.++ +....+.....
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~-~~~~~~~~~~~--- 77 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG-ETLGRIDLSTP--- 77 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC-CEEEEEECCBT---
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC-cEEEEEecCCC---
Confidence 589999999999999999999999987765555678999999999885 5567899999999887 22222211100
Q ss_pred cCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEee
Q 001319 677 RTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG 756 (1101)
Q Consensus 677 ~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~ 756 (1101)
..+...+..++++|+++.++++.
T Consensus 78 ---------------------------------------------------------~~~~~~~~~v~~s~dg~~l~~~~ 100 (337)
T d1pbyb_ 78 ---------------------------------------------------------EERVKSLFGAALSPDGKTLAIYE 100 (337)
T ss_dssp ---------------------------------------------------------TEEEECTTCEEECTTSSEEEEEE
T ss_pred ---------------------------------------------------------cccccceeeEEEcCCCcEEEEee
Confidence 00122233467777777776665
Q ss_pred cCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCce
Q 001319 757 SNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFK 836 (1101)
Q Consensus 757 ~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~ 836 (1101)
.+.....|.. ...++.+.+||..+++
T Consensus 101 ~~~~~~~~~~------------------------------------------------------~~~~~~~~~~d~~~~~ 126 (337)
T d1pbyb_ 101 SPVRLELTHF------------------------------------------------------EVQPTRVALYDAETLS 126 (337)
T ss_dssp EEEEECSSCE------------------------------------------------------EECCCEEEEEETTTTE
T ss_pred cCCcceeeec------------------------------------------------------cccccceeeccccCCe
Confidence 5433322211 1124456667776666
Q ss_pred EEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcC------------------
Q 001319 837 VMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFST------------------ 898 (1101)
Q Consensus 837 ~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~------------------ 898 (1101)
....+.. ...+..++|+| +++++++++. .+.+||..+++....+..+... ....+++
T Consensus 127 ~~~~~~~-~~~~~~~~~s~-dg~~l~~~~~--~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (337)
T d1pbyb_ 127 RRKAFEA-PRQITMLAWAR-DGSKLYGLGR--DLHVMDPEAGTLVEDKPIQSWE-AETYAQPDVLAVWNQHESSGVMATP 201 (337)
T ss_dssp EEEEEEC-CSSCCCEEECT-TSSCEEEESS--SEEEEETTTTEEEEEECSTTTT-TTTBCCCBCCCCCCCCTTTTEEEEE
T ss_pred EEEeccc-cCCceEEEEcC-CCCEEEEEcC--CcceeeeecCcEEEEeecCCcc-ccceecCCcceeeccccccceeeee
Confidence 6666653 34466667777 6666666543 3566776666665554332211 1111111
Q ss_pred ------CCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeE
Q 001319 899 ------SLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQ 972 (1101)
Q Consensus 899 ------d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~ 972 (1101)
+......+..++.+.+|+..++......... .......+.+++++.++++. ++.+++||+.+++.+..
T Consensus 202 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~ 275 (337)
T d1pbyb_ 202 FYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRI-----MDVFYFSTAVNPAKTRAFGA-YNVLESFDLEKNASIKR 275 (337)
T ss_dssp EEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEE-----CSSCEEEEEECTTSSEEEEE-ESEEEEEETTTTEEEEE
T ss_pred eeeeeeccceeeecccCccEEEEEcCCCcEEEEEecC-----CCcceEEEEecccceEEEEc-cccEEEEECCCCcEEEE
Confidence 1222223344566999999887654322221 11567788999999988665 58999999999999988
Q ss_pred eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 973 WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 973 ~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+.. ...+.+++|||||++|++++.||.|+|||..+++.+..+..
T Consensus 276 ~~~----~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 276 VPL----PHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EEC----SSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EcC----CCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 865 56688999999999999999999999999999999998864
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.86 E-value=1.4e-19 Score=197.76 Aligned_cols=300 Identities=9% Similarity=0.053 Sum_probs=211.2
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCC--CCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCc
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAP--GHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKK 586 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~--~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~ 586 (1101)
+++++++.|++|++||+.+.+....+..+ ...+.+++|+|||+++++++. .++.|.+||+.+++.+..+..+...
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~---~~~~v~v~D~~t~~~~~~~~~~~~~ 78 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVN---KSESLVKIDLVTGETLGRIDLSTPE 78 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEET---TTTEEEEEETTTCCEEEEEECCBTT
T ss_pred eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEEC---CCCeEEEEECCCCcEEEEEecCCCc
Confidence 58999999999999999999888776543 446789999999999865543 3789999999999999888765431
Q ss_pred ----ceEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 587 ----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 587 ----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
.+..++|+|++++++++. .++.+.+||..+++....+.... .+..++|+|+|+++++++.
T Consensus 79 ~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~---~~~~~~~s~dg~~l~~~~~- 154 (337)
T d1pbyb_ 79 ERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR---QITMLAWARDGSKLYGLGR- 154 (337)
T ss_dssp EEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS---SCCCEEECTTSSCEEEESS-
T ss_pred ccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccC---CceEEEEcCCCCEEEEEcC-
Confidence 234589999999998875 36789999999999988887543 4788999999999998864
Q ss_pred CcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEc
Q 001319 651 NGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTM 730 (1101)
Q Consensus 651 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 730 (1101)
.+.+||..++. ....+..... .....+.+++..+.......
T Consensus 155 -~~~~~d~~~~~-~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~------------------------------- 195 (337)
T d1pbyb_ 155 -DLHVMDPEAGT-LVEDKPIQSW------EAETYAQPDVLAVWNQHESS------------------------------- 195 (337)
T ss_dssp -SEEEEETTTTE-EEEEECSTTT------TTTTBCCCBCCCCCCCCTTT-------------------------------
T ss_pred -CcceeeeecCc-EEEEeecCCc------cccceecCCcceeecccccc-------------------------------
Confidence 57789988762 2322222111 11123333333221110000
Q ss_pred CCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEE
Q 001319 731 PESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCI 810 (1101)
Q Consensus 731 ~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 810 (1101)
+...+.......+.........++.+.+|+.. ++........ .+...+..+
T Consensus 196 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~--~~~~~~~~~ 246 (337)
T d1pbyb_ 196 -----GVMATPFYTARKDIDPADPTAYRTGLLTMDLE----------------------TGEMAMREVR--IMDVFYFST 246 (337)
T ss_dssp -----TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETT----------------------TCCEEEEEEE--ECSSCEEEE
T ss_pred -----ceeeeeeeeeeeccceeeecccCccEEEEEcC----------------------CCcEEEEEec--CCCcceEEE
Confidence 11111112222333334444445556666543 3332222221 266778889
Q ss_pred EecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeecc
Q 001319 811 ALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKG 886 (1101)
Q Consensus 811 ~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~ 886 (1101)
++++++.+++.+ ++.|++||+.+++.+..+. +...+.+++|+| ||++|++++.||+|+|||..+++.+..++.
T Consensus 247 ~~~~~~~~~~~~-~~~i~v~d~~~~~~~~~~~-~~~~~~~~~~s~-dG~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 247 AVNPAKTRAFGA-YNVLESFDLEKNASIKRVP-LPHSYYSVNVST-DGSTVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp EECTTSSEEEEE-ESEEEEEETTTTEEEEEEE-CSSCCCEEEECT-TSCEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred EecccceEEEEc-cccEEEEECCCCcEEEEEc-CCCCEEEEEECC-CCCEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 999999988655 5889999999999998886 466789999999 999999999999999999999999887754
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=2.1e-19 Score=197.19 Aligned_cols=315 Identities=8% Similarity=-0.037 Sum_probs=215.8
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCeeeeccC-CCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDA-PGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1101)
++++ +++++++++.|++|.+||+.+.+...++.. +...+.+++|+|||+++++++. .++.|.+||+.+++.+..
T Consensus 3 a~~~--~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~---~~~~v~~~d~~t~~~~~~ 77 (346)
T d1jmxb_ 3 ALKA--GHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNN---HYGDIYGIDLDTCKNTFH 77 (346)
T ss_dssp CCCT--TCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEET---TTTEEEEEETTTTEEEEE
T ss_pred cCCC--CCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEEC---CCCcEEEEeCccCeeeee
Confidence 4544 779999999999999999999988877664 3456789999999999876653 378999999999999887
Q ss_pred ecccCCc-----ceEEEEEeCCCCEEEEEe------------CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 580 YAGFRKK-----SNGVVQFDTTQNHFLAVG------------EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 580 ~~~~~~~-----~v~~~~~~~~~~~l~~~~------------~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
+...... .+..++|+|||+++++++ .++.+.+|+..+++....+........+..+.+++++.
T Consensus 78 ~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (346)
T d1jmxb_ 78 ANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS 157 (346)
T ss_dssp EESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC
T ss_pred ecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeeccCceEEEEecCCCE
Confidence 7654321 244589999999998765 47789999998877655443332223456777777877
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
.++. ++.+.+|+..++ .....+... .....+.++|++..+......... ..++
T Consensus 158 ~~~~---~~~~~~~~~~~~-~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~----- 210 (346)
T d1jmxb_ 158 LYVA---GPDIYKMDVKTG-KYTVALPLR------NWNRKGYSAPDVLYFWPHQSPRHE------------FSML----- 210 (346)
T ss_dssp EEEE---SSSEEEECTTTC-CEEEEECST------TCCCTTBCCCBCCCCCCCCCTTCE------------EEEE-----
T ss_pred EEEe---CCcceEEEccCC-CEEEEEecC------CCccceEEeccccEEEEEecCCCc------------eEee-----
Confidence 6654 356889998776 333333221 122344566666655322222110 0000
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCC
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVN 802 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 802 (1101)
.....+......+.+...++.+.+|+.. ++........ .
T Consensus 211 -----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~--~ 249 (346)
T d1jmxb_ 211 -----------------YTIARFKDDKQDPATADLLYGYLSVDLK----------------------TGKTHTQEFA--D 249 (346)
T ss_dssp -----------------EEEEEC-------CCCEEEEEEEEEETT----------------------TCCEEEEEEE--E
T ss_pred -----------------eeeeeeccCceeEeeccCCceEEEEECC----------------------CCceEEEEee--c
Confidence 0111222233334444445566666543 3332222222 2
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEE
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKS 882 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~ 882 (1101)
+...+..+.+++++.+++...++.|.+||..+++.+..+.. ...+.+++|+| |+++|++++.||.|++||+.+++.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~v~v~d~~~~~~~~~~~~-~~~~~~va~s~-DG~~l~v~~~d~~v~v~D~~t~~~i~ 327 (346)
T d1jmxb_ 250 LTELYFTGLRSPKDPNQIYGVLNRLAKYDLKQRKLIKAANL-DHTYYCVAFDK-KGDKLYLGGTFNDLAVFNPDTLEKVK 327 (346)
T ss_dssp CSSCEEEEEECSSCTTEEEEEESEEEEEETTTTEEEEEEEC-SSCCCEEEECS-SSSCEEEESBSSEEEEEETTTTEEEE
T ss_pred ccceeEEEEEeCCCCEEEEecCCeEEEEECCCCcEEEEEcC-CCCEEEEEEcC-CCCEEEEEeCCCcEEEEECccCCEEE
Confidence 67778899999999999988888999999999999888763 55799999999 99999999999999999999999998
Q ss_pred eeccCCCC
Q 001319 883 KLKGHQKR 890 (1101)
Q Consensus 883 ~~~~h~~~ 890 (1101)
.+..+.+.
T Consensus 328 ~i~~p~g~ 335 (346)
T d1jmxb_ 328 NIKLPGGD 335 (346)
T ss_dssp EEECSSSC
T ss_pred EEECCCCC
Confidence 88755443
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.82 E-value=4.2e-17 Score=180.80 Aligned_cols=326 Identities=9% Similarity=0.016 Sum_probs=212.7
Q ss_pred cccCCccEEEEEEccCCCEEEEE-----ECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEe-----
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVA-----FTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC----- 471 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~-----~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~----- 471 (1101)
...+.+++.+++++|||+.+++. +..+.|.+||..+++.+. ++..+..+ .++|+|||++ ++++
T Consensus 16 ~~~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~---~~~~~~~~--~~a~SpDG~~--l~va~~~~~ 88 (373)
T d2madh_ 16 AGAADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILG---HVNGGFLP--NPVAAHSGSE--FALASTSFS 88 (373)
T ss_pred cccCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEE---EEeCCCCc--cEEEcCCCCE--EEEEeecCC
Confidence 34578899999999999998875 234679999999998776 45555443 7999999994 5443
Q ss_pred -----cCCceEEEEE-cCCceeEEeecCCcCeEE-------EecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC
Q 001319 472 -----GDDKLIKVWE-LSGRKLFNFEGHEAPVYS-------ICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG 538 (1101)
Q Consensus 472 -----~~d~~v~iwd-~~~~~~~~~~~h~~~v~~-------v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~ 538 (1101)
..++.|.+|| .+++.+..+..+...... +.|++++...++.....++.+.+|+....+......
T Consensus 89 ~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--- 165 (373)
T d2madh_ 89 RIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLS--- 165 (373)
T ss_pred cccccccceEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEec---
Confidence 4568899999 889988888777665543 445443322223333445677788776655433322
Q ss_pred CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC-----cceEEEEEeCCCCEEEEEeCCCcEEEEE
Q 001319 539 HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-----KSNGVVQFDTTQNHFLAVGEDSQIKFWD 613 (1101)
Q Consensus 539 ~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-----~~v~~~~~~~~~~~l~~~~~dg~i~iwd 613 (1101)
...++.++|+|+.++.... .++.+.+|+...++.......... .......+.+++ .++..+.++.+++|+
T Consensus 166 -~~~~~~~s~~g~~~~v~~~---~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~ 240 (373)
T d2madh_ 166 -SPTCYHIHPGAPSTFYLLC---AQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSG-RIVWPVYSGKILQAD 240 (373)
T ss_pred -cceeEEEecCCCcEEEEEc---CCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCc-eEEEecCCceEEEEE
Confidence 3567889999987764433 488999999998887766543221 112234455544 455666788888888
Q ss_pred CCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccccc
Q 001319 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1101)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 693 (1101)
...+...................+.|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----------------------------------------------------- 267 (373)
T d2madh_ 241 ISAAGATNKAPIDALSGGRKADTWRPG----------------------------------------------------- 267 (373)
T ss_pred cCCCeEEEEEeeccccCcEEeeeeccC-----------------------------------------------------
Confidence 776544322211111000000111110
Q ss_pred ccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCC
Q 001319 694 SSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNP 773 (1101)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~ 773 (1101)
....+++++++..++
T Consensus 268 ---------------------------------------------~~~~~~~~~d~~~~~-------------------- 282 (373)
T d2madh_ 268 ---------------------------------------------GWQQVAYLKSSDGIY-------------------- 282 (373)
T ss_pred ---------------------------------------------cceeeEEecCCCeEE--------------------
Confidence 011122333332221
Q ss_pred CCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEE
Q 001319 774 SGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLA 852 (1101)
Q Consensus 774 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~ 852 (1101)
.+.+++..++... ++.+.+||..+++.+..+. +...+..++
T Consensus 283 -------------------------------------~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~-~~~~~~~~a 324 (373)
T d2madh_ 283 -------------------------------------LLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS-LGHDVDAIS 324 (373)
T ss_pred -------------------------------------EecCCCceEEeecCCCeEEEEECCCCcEEEEec-CCCCeeEEE
Confidence 1122334444444 7889999999999988876 466789999
Q ss_pred EecCCCC--EEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCC
Q 001319 853 FHPQDNN--IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTS 899 (1101)
Q Consensus 853 ~s~~~~~--~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d 899 (1101)
|+| ||+ ++++++.|++|++||+.+++.+..+.++....+.|++.++
T Consensus 325 ~sp-DG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~~g~~P~~l~~~~~ 372 (373)
T d2madh_ 325 VAQ-DGGPDLYALSAGTEVLHIYDAGAGDQDQSTVELGSGPQVLSVMNE 372 (373)
T ss_pred ECC-CCCEEEEEEeCCCCeEEEEECCCCCEEEEECCCCCCCcEEEEecC
Confidence 999 776 4578899999999999999999999988888888887654
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.81 E-value=3e-17 Score=182.02 Aligned_cols=201 Identities=6% Similarity=-0.090 Sum_probs=139.9
Q ss_pred cCCCcEEEEEEecCCceEEEEE----eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 342 HQGSTVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 342 ~h~~~V~~v~fspdg~~llasg----~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
.+..++.+++++|||++++++. +..+.|.+||..+++.+.. +..+. ...++||||
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~~~--~~~~a~SpD 76 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGH-------------------VNGGF--LPNPVAAHS 76 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEE-------------------EeCCC--CccEEEcCC
Confidence 4778999999999999876552 2345799999999987652 33333 237999999
Q ss_pred CCEEEEEE----------CCCeEEEEeecCCcccccceeeecccCcE-------EEEEEecCCCceEEEEecCCceEEEE
Q 001319 418 GNYVGVAF----------TKHLIQLYSYAGSNDLRQHSQIDAHVGAV-------NDLAFAYPNKLLCVVTCGDDKLIKVW 480 (1101)
Q Consensus 418 g~~las~~----------~d~~i~vwd~~~~~~~~~~~~l~~h~~~V-------~~l~~s~d~~~~~l~s~~~d~~v~iw 480 (1101)
|++|++++ .++.|.+||..+++.+. .+..+.... ..+.|++|++.++++....++.+.+|
T Consensus 77 G~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~~~---~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~ 153 (373)
T d2madh_ 77 GSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIA---DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLV 153 (373)
T ss_pred CCEEEEEeecCCcccccccceEEEEEECCCCcEEE---EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEe
Confidence 99999875 35789999999998765 333443332 45789999997666666777889999
Q ss_pred E-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCC------CCceEEEEEccCCCEE
Q 001319 481 E-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAP------GHWCTTMLYSADGSRL 553 (1101)
Q Consensus 481 d-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~------~~~v~~~~~s~d~~~l 553 (1101)
+ ..++..... ....++.+++++. ..+++.+.|+.+.+|+............. ......+.+++++.++
T Consensus 154 ~~~~~~~~~~~----~~~~~~~~s~~g~-~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (373)
T d2madh_ 154 VQGGSSDDQLL----SSPTCYHIHPGAP-STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV 228 (373)
T ss_pred eccCCeEEEEe----ccceeEEEecCCC-cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceEE
Confidence 9 555544333 3356677777543 45678899999999998877665543221 1234456666776666
Q ss_pred EEeecCCCCCceEEEEeCCCCee
Q 001319 554 FSCGTSKDGDSFLVEWNESEGTI 576 (1101)
Q Consensus 554 ~~~~~~~~~~~~i~iwd~~~~~~ 576 (1101)
+... ++.+.+|+...+..
T Consensus 229 ~~~~-----~~~v~~~~~~~~~~ 246 (373)
T d2madh_ 229 WPVY-----SGKILQADISAAGA 246 (373)
T ss_pred EecC-----CceEEEEEcCCCeE
Confidence 5542 66788888776543
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.76 E-value=1.7e-16 Score=172.66 Aligned_cols=278 Identities=14% Similarity=0.168 Sum_probs=185.4
Q ss_pred eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-CCCeEEEEeec
Q 001319 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd~~ 436 (1101)
.++++++.|++|+||+++....+.. .....|.+.|.+++|||||++|++++ .|+.|++|++.
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~~~l~~-----------------~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~ 67 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHEGALTL-----------------TQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIA 67 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTTSCEEE-----------------EEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred EEEEECCCCCcEEEEEEcCCCCeEE-----------------EEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEe
Confidence 3557888999999999976543321 01235778999999999999996665 58999999998
Q ss_pred CCcccccceeeecccCcEEEEEEecCCCceEEEEe-cCCceEEEEE-cCCcee--EEeecCCcCeEEEecccCCCccEEE
Q 001319 437 GSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTC-GDDKLIKVWE-LSGRKL--FNFEGHEAPVYSICPHHKENIQFIF 512 (1101)
Q Consensus 437 ~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~-~~d~~v~iwd-~~~~~~--~~~~~h~~~v~~v~~~~~~~~~~l~ 512 (1101)
.............+...+..++|+|||++ |+++ ..++.|.+|+ ...... .....+...+.++.+++ ++++++
T Consensus 68 ~~~~~~~~~~~~~~~~~p~~l~~spDg~~--l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~--d~~~~~ 143 (333)
T d1ri6a_ 68 PDDGALTFAAESALPGSLTHISTDHQGQF--VFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISP--DNRTLW 143 (333)
T ss_dssp TTTCCEEEEEEEECSSCCSEEEECTTSSE--EEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECT--TSSEEE
T ss_pred CCCCcEEEeeecccCCCceEEEEcCCCCE--EeecccCCCceeeeccccccceecccccCCCccceEEEeee--cceeee
Confidence 76544322222345556788999999994 5554 4678999999 444333 33445667788888877 456665
Q ss_pred Eec-cCCeEEEEecCCCCeeee------ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCC--e--eEEEec
Q 001319 513 STA-IDGKIKAWLYDTMGSRVD------YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEG--T--IKRTYA 581 (1101)
Q Consensus 513 s~~-~d~~i~~wd~~~~~~~~~------~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~--~--~~~~~~ 581 (1101)
.++ .+..|.+|+......... ..........++|++++.+++.... ..+...+|+.... . ......
T Consensus 144 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 220 (333)
T d1ri6a_ 144 VPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNE---LNSSVDVWELKDPHGNIECVQTLD 220 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEET---TTTEEEEEESSCTTSCCEEEEEEE
T ss_pred ccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeecc---ccCceEEEeecccccceeeeeeee
Confidence 555 556799999876544321 2233456789999999999887654 2455666765432 1 112221
Q ss_pred cc-----CCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeec-cCCCCCCCCeeEEecCCCEEEEEEc-CCcE
Q 001319 582 GF-----RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD-AEGGLPNLPRLRFSKEGNLLAVTTA-DNGF 653 (1101)
Q Consensus 582 ~~-----~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~-~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i 653 (1101)
.. .......+++++++++++... .++.+.+|++.......... .......+..++|+|||++|++++. ++.|
T Consensus 221 ~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v 300 (333)
T d1ri6a_ 221 MMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHI 300 (333)
T ss_dssp CSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEE
T ss_pred eeecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeE
Confidence 11 112355688999999877754 67889999887643322221 1111224678999999999887764 6889
Q ss_pred EEEEcc
Q 001319 654 KILANA 659 (1101)
Q Consensus 654 ~iwd~~ 659 (1101)
.+|+++
T Consensus 301 ~v~~id 306 (333)
T d1ri6a_ 301 SVYEIV 306 (333)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999654
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=6.7e-17 Score=177.74 Aligned_cols=315 Identities=11% Similarity=0.019 Sum_probs=194.0
Q ss_pred EEEEccCCCEEEEEE-----CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEE--------ecCCceE
Q 001319 411 RVAWSPDGNYVGVAF-----TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVT--------CGDDKLI 477 (1101)
Q Consensus 411 ~~~~spdg~~las~~-----~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s--------~~~d~~v 477 (1101)
-.+.+|||+.+++.. .+..|.+||..+++.+. ++..+.. ..++|+|||+.+++++ ++.|+.|
T Consensus 6 ~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~---~~~~g~~--~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v 80 (355)
T d2bbkh_ 6 LEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIG---MIDGGFL--PNPVVADDGSFIAHASTVFSRIARGERTDYV 80 (355)
T ss_dssp CCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEE---EEEECSS--CEEEECTTSSCEEEEEEEEEETTEEEEEEEE
T ss_pred eEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEE---EEECCCC--CceEEcCCCCEEEEEeCCCccccccCCCCEE
Confidence 346689999998764 45679999999998766 4444443 4799999999633332 2446778
Q ss_pred EEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEe
Q 001319 478 KVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSC 556 (1101)
Q Consensus 478 ~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 556 (1101)
++|| .+++.+..+..+......+ ......++|+++|++++..
T Consensus 81 ~v~D~~t~~~~~~~~~~~~~~~~~-------------------------------------~~~~~~~~~s~dg~~~~v~ 123 (355)
T d2bbkh_ 81 EVFDPVTLLPTADIELPDAPRFLV-------------------------------------GTYPWMTSLTPDGKTLLFY 123 (355)
T ss_dssp EEECTTTCCEEEEEEETTCCCCCB-------------------------------------SCCGGGEEECTTSSEEEEE
T ss_pred EEEECCCCCEEEEEecCCcceeec-------------------------------------CCCCceEEEecCCCeeEEe
Confidence 8888 6776665554433221111 0112346688888888776
Q ss_pred ecCCCCCceEEEEeCCCCeeEEEecccCCc------ceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCC
Q 001319 557 GTSKDGDSFLVEWNESEGTIKRTYAGFRKK------SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGL 629 (1101)
Q Consensus 557 ~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~ 629 (1101)
.. ..+..+.+|+..+++.+..+...... ....+.+++++..++... .++.+.+++...... ...
T Consensus 124 ~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~-------~~~ 194 (355)
T d2bbkh_ 124 QF--SPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHP-------EDE 194 (355)
T ss_dssp EC--SSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSC-------TTS
T ss_pred cC--CCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEecccccc-------eec
Confidence 43 23567888999888888777654321 122244555554444332 333334433332211 122
Q ss_pred CCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccc-cccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCC
Q 001319 630 PNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLR-AVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSP 708 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~ 708 (1101)
..+....+.+++..++.++.++.+++|+...+..... ....
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------------------------- 236 (355)
T d2bbkh_ 195 FLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEA-------------------------------------- 236 (355)
T ss_dssp CBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEES--------------------------------------
T ss_pred ceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCC--------------------------------------
Confidence 2456778888999999999999999999876521110 0000
Q ss_pred CCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeecccccccc
Q 001319 709 VRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLP 788 (1101)
Q Consensus 709 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 788 (1101)
+........+.|++..
T Consensus 237 ---------------------------~~~~~~~~~~~p~~~~------------------------------------- 252 (355)
T d2bbkh_ 237 ---------------------------LTEAERADGWRPGGWQ------------------------------------- 252 (355)
T ss_dssp ---------------------------SCHHHHHTTEEECSSS-------------------------------------
T ss_pred ---------------------------cccceEeeeeeccceE-------------------------------------
Confidence 0000000111111211
Q ss_pred CCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc-----------CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCC
Q 001319 789 SSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT-----------GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQD 857 (1101)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~-----------dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~ 857 (1101)
.+++++|+..++... .+.|.+||..+++.+..+.. ...+.+++|+| |
T Consensus 253 --------------------~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~-~~~~~~~a~sp-D 310 (355)
T d2bbkh_ 253 --------------------QVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEM-GHEIDSINVSQ-D 310 (355)
T ss_dssp --------------------CEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEE-EEEECEEEECC-S
T ss_pred --------------------EEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEecC-CCCEEEEEEcC-C
Confidence 233444444333321 24699999999999888764 45688999999 7
Q ss_pred CC--EEEEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCC
Q 001319 858 NN--IIAIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSL 900 (1101)
Q Consensus 858 ~~--~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~ 900 (1101)
++ +++++..|++|++||+.+++.+..+.++......+.+.++|
T Consensus 311 G~~~l~v~~~~d~~i~v~D~~tg~~~~~i~~~G~~p~~i~~~d~~ 355 (355)
T d2bbkh_ 311 EKPLLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355 (355)
T ss_dssp SSCEEEEEETTTTEEEEEETTTCCEEEEECCCCSSCCEEECCCCC
T ss_pred CCeEEEEEECCCCEEEEEECCCCCEEEEEeCcCCCccEEEeCCCC
Confidence 76 45677789999999999999999998776666666665543
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.75 E-value=6.8e-17 Score=177.71 Aligned_cols=290 Identities=12% Similarity=0.066 Sum_probs=189.7
Q ss_pred cEEEEEEecCCceEEEEE----eccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 346 TVISMDFHPSHQTLLLVG----SSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg----~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
++...+.+|||++++++. ..++.|.+||..+++.+.. +..+ .+..++|||||++|
T Consensus 3 p~~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~-------------------~~~g--~~~~~a~SpDg~~l 61 (355)
T d2bbkh_ 3 PRILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGM-------------------IDGG--FLPNPVVADDGSFI 61 (355)
T ss_dssp CCBCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEE-------------------EEEC--SSCEEEECTTSSCE
T ss_pred CcEeEeeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEE-------------------EECC--CCCceEEcCCCCEE
Confidence 344456799999876553 2355799999999987652 2223 33379999999999
Q ss_pred EEEE----------CCCeEEEEeecCCcccccceeeecc----cCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCce
Q 001319 422 GVAF----------TKHLIQLYSYAGSNDLRQHSQIDAH----VGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRK 486 (1101)
Q Consensus 422 as~~----------~d~~i~vwd~~~~~~~~~~~~l~~h----~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~ 486 (1101)
++.+ .|+.|++||+.+++.+........+ ......++|++|+++++++..+.+..+.+|+ .+++.
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~ 141 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAF 141 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEE
T ss_pred EEEeCCCccccccCCCCEEEEEECCCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcE
Confidence 8653 4789999999998876533211111 1234568999999975555667788999999 88888
Q ss_pred eEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec------cCCCCceEEEEEccCCCEEEEeecCC
Q 001319 487 LFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY------DAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 487 ~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
+..+..+...... . . .....++.+.|+...++........... ..+...+....+++++..++.++.
T Consensus 142 ~~~~~~~~~~~~~-~---~-~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 214 (355)
T d2bbkh_ 142 KRMLDVPDCYHIF-P---T-APDTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTY-- 214 (355)
T ss_dssp EEEEECCSEEEEE-E---E-ETTEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBT--
T ss_pred eeEEecCCcceEe-e---c-CCcceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecC--
Confidence 8777654432211 1 1 1122334444555444443332222111 112223555677888888887764
Q ss_pred CCCceEEEEeCCCCeeEE--EecccCC---------cceEEEEEeCCCCEEEEEeCC----------CcEEEEECCCCee
Q 001319 561 DGDSFLVEWNESEGTIKR--TYAGFRK---------KSNGVVQFDTTQNHFLAVGED----------SQIKFWDMDNVNI 619 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~--~~~~~~~---------~~v~~~~~~~~~~~l~~~~~d----------g~i~iwd~~~~~~ 619 (1101)
++.+++|+...++... ....+.. .....+++++++..++....+ ..|.+||..+++.
T Consensus 215 --~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~ 292 (355)
T d2bbkh_ 215 --TGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGER 292 (355)
T ss_dssp --TSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCE
T ss_pred --CCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEeccCCceeecCCCCeEEEEeCCCCcE
Confidence 7899999998875432 1221110 122348899999988876533 4699999999998
Q ss_pred eEeeccCCCCCCCCeeEEecCCC--EEEEEEcCCcEEEEEcccccccccccc
Q 001319 620 LTSTDAEGGLPNLPRLRFSKEGN--LLAVTTADNGFKILANAIGLRSLRAVE 669 (1101)
Q Consensus 620 ~~~~~~~~~~~~v~~v~~s~~g~--~l~~~~~d~~i~iwd~~~~~~~~~~~~ 669 (1101)
+..+.... .+.+++|+|||+ +++++..|+.|++||..++ +.++.+.
T Consensus 293 ~~~~~~~~---~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg-~~~~~i~ 340 (355)
T d2bbkh_ 293 LAKFEMGH---EIDSINVSQDEKPLLYALSTGDKTLYIHDAESG-EELRSVN 340 (355)
T ss_dssp EEEEEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEETTTC-CEEEEEC
T ss_pred EEEecCCC---CEEEEEEcCCCCeEEEEEECCCCEEEEEECCCC-CEEEEEe
Confidence 88876533 468999999997 3455667899999999988 4455544
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.74 E-value=2.4e-16 Score=171.46 Aligned_cols=281 Identities=9% Similarity=0.099 Sum_probs=188.2
Q ss_pred EEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEE
Q 001319 752 LLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISL 829 (1101)
Q Consensus 752 l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~v 829 (1101)
+++++.++.|++|+++... .+..... ..+...+..++|||||++|+++. ++.|++
T Consensus 7 ~v~~~~~~~I~v~~~~~~~---------------------~l~~~~~--~~~~~~v~~la~spDG~~L~v~~~~d~~i~~ 63 (333)
T d1ri6a_ 7 YIASPESQQIHVWNLNHEG---------------------ALTLTQV--VDVPGQVQPMVVSPDKRYLYVGVRPEFRVLA 63 (333)
T ss_dssp EEEEGGGTEEEEEEECTTS---------------------CEEEEEE--EECSSCCCCEEECTTSSEEEEEETTTTEEEE
T ss_pred EEECCCCCcEEEEEEcCCC---------------------CeEEEEE--EcCCCCEeEEEEeCCCCEEEEEECCCCeEEE
Confidence 5677788999999986321 1000000 12678899999999999886554 789999
Q ss_pred EECCCceEEEEe---eCCCCCeeEEEEecCCCCEEEEEeC-CCcEEEEEeecceEEE--eeccCCCCeeEEEEcCCCCEE
Q 001319 830 FNMMTFKVMTTF---MSPPPASTFLAFHPQDNNIIAIGTE-DSTIHIYNVRVDEVKS--KLKGHQKRITGLAFSTSLNIL 903 (1101)
Q Consensus 830 wd~~~~~~~~~~---~~~~~~i~~l~~s~~~~~~la~g~~-dg~v~iwd~~~~~~~~--~~~~h~~~V~~l~~s~d~~~l 903 (1101)
|++........+ ..+...+..++|+| |+++|++++. ++.|.+|+........ ....+...+.++.++||++++
T Consensus 64 ~~i~~~~~~~~~~~~~~~~~~p~~l~~sp-Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~ 142 (333)
T d1ri6a_ 64 YRIAPDDGALTFAAESALPGSLTHISTDH-QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTL 142 (333)
T ss_dssp EEECTTTCCEEEEEEEECSSCCSEEEECT-TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEE
T ss_pred EEEeCCCCcEEEeeecccCCCceEEEEcC-CCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceee
Confidence 998765432222 22445678899999 8998888875 6789999988765543 334567778999999999988
Q ss_pred EEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCcee----eeE---e
Q 001319 904 VSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMER----IRQ---W 973 (1101)
Q Consensus 904 ~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~----~~~---~ 973 (1101)
++++. +..|.+|+.........................++|++++..+.... .+...+|+...... ... .
T Consensus 143 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 222 (333)
T d1ri6a_ 143 WVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMM 222 (333)
T ss_dssp EEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECS
T ss_pred eccccccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeee
Confidence 87774 45699999887654433333222222224567899999999988754 56778887653321 111 1
Q ss_pred ccCCCCCCCEEEEEEccCCCEEEE-EeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEE
Q 001319 974 TPQDALSAPISCAVYSCNSQLVFA-TFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAI 1052 (1101)
Q Consensus 974 ~~~~~h~~~v~~v~~s~dg~~l~s-~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s 1052 (1101)
............+++++|+++++. +..++.+.+|++........+... +.....+.+++|+| |+++|++
T Consensus 223 ~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~p~~~a~sp-DGk~l~v 292 (333)
T d1ri6a_ 223 PENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGF---------QPTETQPRGFNVDH-SGKYLIA 292 (333)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEE---------EECSSSCCCEEECT-TSSEEEE
T ss_pred ecCCCccccceeEEEecccCceeeecccCCeEEEEEEcCCCCEEEEEEE---------eCCCCCeeEEEEeC-CCCEEEE
Confidence 111222556788999999997765 456789999998765443332210 11122455789999 6777665
Q ss_pred E-ECCCeEEEEeCCC
Q 001319 1053 G-LTDGSVKVMEPSE 1066 (1101)
Q Consensus 1053 ~-~~Dg~v~iWd~~~ 1066 (1101)
+ ..+++|.+|++..
T Consensus 293 a~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 293 AGQKSHHISVYEIVG 307 (333)
T ss_dssp ECTTTCEEEEEEEET
T ss_pred EECCCCeEEEEEEEC
Confidence 5 4578999996644
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.63 E-value=5.9e-14 Score=160.28 Aligned_cols=274 Identities=11% Similarity=0.041 Sum_probs=160.8
Q ss_pred EEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC--
Q 001319 349 SMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-- 426 (1101)
Q Consensus 349 ~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~-- 426 (1101)
.+.|.+|+++ +. ..|+.|.+||+.+++.... +....+..|...|.++.|||||++||.++.
T Consensus 21 ~~~W~~d~~~-~~--~~~~~~~~~~~~t~~~~~~--------------~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~ 83 (470)
T d2bgra1 21 SLRWISDHEY-LY--KQENNILVFNAEYGNSSVF--------------LENSTFDEFGHSINDYSISPDGQFILLEYNYV 83 (470)
T ss_dssp CCEECSSSEE-EE--ESSSCEEEEETTTCCEEEE--------------ECTTTTTTSSSCCCEEEECTTSSEEEEEEEEE
T ss_pred CCEeCCCCEE-EE--EcCCcEEEEECCCCCEEEE--------------EchhhhhhccCccceeEECCCCCEEEEEECCc
Confidence 4678999984 44 3688999999999876431 122346778889999999999999998854
Q ss_pred -------CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEeecC-----
Q 001319 427 -------KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFEGH----- 493 (1101)
Q Consensus 427 -------d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h----- 493 (1101)
++.+.+||+++++.. .+..|.+.+..+.|||||+ .+|.. .++.+.+|+ .+++..+....+
T Consensus 84 ~~~r~s~~~~~~l~d~~~~~~~----~l~~~~~~~~~~~~SPDG~--~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~ 156 (470)
T d2bgra1 84 KQWRHSYTASYDIYDLNKRQLI----TEERIPNNTQWVTWSPVGH--KLAYV-WNNDIYVKIEPNLPSYRITWTGKEDII 156 (470)
T ss_dssp ECSSSCEEEEEEEEETTTTEEC----CSSCCCTTEEEEEECSSTT--CEEEE-ETTEEEEESSTTSCCEECCSCCBTTTE
T ss_pred ceeeeccCceEEEEECCCCccc----ccccCCccccccccccCcc--eeeEe-ecccceEEECCCCceeeeeeccCCCcc
Confidence 567899999998643 4678899999999999999 45554 477899999 666655433222
Q ss_pred -------------CcCeEEEecccCCCccEEEEeccCCe-EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC
Q 001319 494 -------------EAPVYSICPHHKENIQFIFSTAIDGK-IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS 559 (1101)
Q Consensus 494 -------------~~~v~~v~~~~~~~~~~l~s~~~d~~-i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~ 559 (1101)
.+....+.|+| ||+.|+....|.+ +..|.+...... .........+.+...+..
T Consensus 157 ~~g~~d~~~~~~~~~~~~~~~wSP--DGk~ia~~~~d~~~v~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~------- 224 (470)
T d2bgra1 157 YNGITDWVYEEEVFSAYSALWWSP--NGTFLAYAQFNDTEVPLIEYSFYSDE---SLQYPKTVRVPYPKAGAV------- 224 (470)
T ss_dssp EESBCCHHHHHHTSSSSBCEEECT--TSSEEEEEEEECTTCCEEEEEECCST---TCSSCEEEEEECCBTTSC-------
T ss_pred cccccceeeeeeecCCccccEECC--CCCccceeEecCCcCceEEEEeeccC---CCCCCeeeeecccccccc-------
Confidence 22344566876 7788888876644 554443211100 001111222222222221
Q ss_pred CCCCceEEEEeCCCCeeEEEecc----------cCCcceEEEEEeCCCCEEEEEe-CCC-----cEEEEECCCCeeeEee
Q 001319 560 KDGDSFLVEWNESEGTIKRTYAG----------FRKKSNGVVQFDTTQNHFLAVG-EDS-----QIKFWDMDNVNILTST 623 (1101)
Q Consensus 560 ~~~~~~i~iwd~~~~~~~~~~~~----------~~~~~v~~~~~~~~~~~l~~~~-~dg-----~i~iwd~~~~~~~~~~ 623 (1101)
..+..+.+|++..+........ .....+..+.|.+++..++... ..+ .+..+|..++......
T Consensus 225 -~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~~~~~~d~~tg~~~~~~ 303 (470)
T d2bgra1 225 -NPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLV 303 (470)
T ss_dssp -CCEEEEEEEEGGGCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECG
T ss_pred -CCcceEEEEECCCcceeeeccccccCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEEEEEEecCCCCcEEEEE
Confidence 1244678888876654322211 1122355678888886655532 221 2344455566544322
Q ss_pred cc------CCC---CCCCCeeEEecCC--CEEEEEEcCCcEEEEEcc
Q 001319 624 DA------EGG---LPNLPRLRFSKEG--NLLAVTTADNGFKILANA 659 (1101)
Q Consensus 624 ~~------~~~---~~~v~~v~~s~~g--~~l~~~~~d~~i~iwd~~ 659 (1101)
.. ... ...-....+.+++ ..++....+|..++|...
T Consensus 304 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~ 350 (470)
T d2bgra1 304 ARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQ 350 (470)
T ss_dssp GGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEE
T ss_pred EEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEe
Confidence 10 000 0001223444443 345566677776666543
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.56 E-value=6.1e-14 Score=154.29 Aligned_cols=286 Identities=7% Similarity=-0.059 Sum_probs=187.0
Q ss_pred CCCcEEEEEEecCCceEEEE--EeccCc--EEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCC
Q 001319 343 QGSTVISMDFHPSHQTLLLV--GSSNGE--ITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDG 418 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llas--g~~d~~--i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg 418 (1101)
+.+....++.+++|+...++ ...++. |.+||..+++.+.. ..++... .++|+|||
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~-------------------~~~~~~~--~~a~spDg 76 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGH-------------------SLGAFLS--LAVAGHSG 76 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEE-------------------EEECTTC--EEEECTTS
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEE-------------------EeCCCCC--cceECCCC
Confidence 44556666778888754333 344444 66668888876542 3333333 58999999
Q ss_pred CEEEEEE----------CCCeEEEEeecCCcccccceeeeccc-------CcEEEEEEecCCCceEEEEecCCceEEEEE
Q 001319 419 NYVGVAF----------TKHLIQLYSYAGSNDLRQHSQIDAHV-------GAVNDLAFAYPNKLLCVVTCGDDKLIKVWE 481 (1101)
Q Consensus 419 ~~las~~----------~d~~i~vwd~~~~~~~~~~~~l~~h~-------~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd 481 (1101)
++|++.+ .|+.|.+||..+++.+.. +..+. .....++|+|||++ ++++...++.+.+||
T Consensus 77 ~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~---i~~p~~~~~~~g~~p~~~a~SpDGk~-l~va~~~~~~v~~~d 152 (368)
T d1mdah_ 77 SDFALASTSFARSAKGKRTDYVEVFDPVTFLPIAD---IELPDAPRFSVGPRVHIIGNCASSAC-LLFFLFGSSAAAGLS 152 (368)
T ss_dssp SCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEE---EEETTSCSCCBSCCTTSEEECTTSSC-EEEEECSSSCEEEEE
T ss_pred CEEEEEcccCccccccccCCeEEEEECCCCcEeee---ecCCccceecccCCccceEECCCCCE-EEEEeCCCCeEEEEE
Confidence 9999865 367899999999887653 32221 12346899999996 344445689999999
Q ss_pred -cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec------cCCCCceEEEEEccCCCEEE
Q 001319 482 -LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY------DAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 482 -~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~------~~~~~~v~~~~~s~d~~~l~ 554 (1101)
.+++.+..+..+..... .+.+ ...++..+.||.+.+|++......... ..+...+....+.+++..+.
T Consensus 153 ~~~~~~~~~~~~~~~~~~----~~~~-~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 227 (368)
T d1mdah_ 153 VPGASDDQLTKSASCFHI----HPGA-AATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVW 227 (368)
T ss_dssp ETTTEEEEEEECSSCCCC----EEEE-TTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEE
T ss_pred CCCCcEeEEeeccCcceE----ccCC-CceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEE
Confidence 88888887766554321 1222 246677788899888887765544322 22233455677888887776
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEec--ccCC---------cceEEEEEeCCCCEEEEEeCC---------CcEEEEEC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYA--GFRK---------KSNGVVQFDTTQNHFLAVGED---------SQIKFWDM 614 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~--~~~~---------~~v~~~~~~~~~~~l~~~~~d---------g~i~iwd~ 614 (1101)
.. .+.+++++...+....... .... .....+++++++..++....+ ..|.+||.
T Consensus 228 ~~------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~ 301 (368)
T d1mdah_ 228 AV------ASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTA 301 (368)
T ss_dssp CB------SSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEES
T ss_pred ec------CCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEEC
Confidence 54 3446666665554333221 1110 012347899998887765322 35999999
Q ss_pred CCCeeeEeeccCCCCCCCCeeEEecCCC-E-EEEEEcCCcEEEEEccccccccccc
Q 001319 615 DNVNILTSTDAEGGLPNLPRLRFSKEGN-L-LAVTTADNGFKILANAIGLRSLRAV 668 (1101)
Q Consensus 615 ~~~~~~~~~~~~~~~~~v~~v~~s~~g~-~-l~~~~~d~~i~iwd~~~~~~~~~~~ 668 (1101)
.+++.+..+.... .+..++|+|||+ + ++++..++.|++||..++ +.+..+
T Consensus 302 ~t~~~~~~~~~~~---~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg-k~~~~i 353 (368)
T d1mdah_ 302 SVGQTSGPISNGH---DSDAIIAAQDGASDNYANSAGTEVLDIYDAASD-QDQSSV 353 (368)
T ss_dssp SSCCEEECCEEEE---EECEEEECCSSSCEEEEEETTTTEEEEEESSSC-EEEEEC
T ss_pred CCCcEeEEecCCC---ceeEEEECCCCCEEEEEEeCCCCeEEEEECCCC-CEEEEE
Confidence 9999888776432 478899999997 3 345567899999999988 444444
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.54 E-value=1.8e-12 Score=147.68 Aligned_cols=379 Identities=9% Similarity=0.049 Sum_probs=197.9
Q ss_pred EEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC----CcceEEEEEeCCCCEEEEEeC---------CCc
Q 001319 542 TTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR----KKSNGVVQFDTTQNHFLAVGE---------DSQ 608 (1101)
Q Consensus 542 ~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~----~~~v~~~~~~~~~~~l~~~~~---------dg~ 608 (1101)
..+.|.+++.++... ++.+.+||..+++....+..+. ...+..+.|+|||++|+.++. ++.
T Consensus 20 ~~~~W~~d~~~~~~~------~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~ 93 (470)
T d2bgra1 20 YSLRWISDHEYLYKQ------ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTAS 93 (470)
T ss_dssp CCCEECSSSEEEEES------SSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEE
T ss_pred cCCEeCCCCEEEEEc------CCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCce
Confidence 357788999877642 5679999999999877666542 235888999999999998753 567
Q ss_pred EEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCccc-------------
Q 001319 609 IKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEA------------- 675 (1101)
Q Consensus 609 i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~------------- 675 (1101)
+++||+.+++... +..+ ...+..+.|||||+.+|... ++.+++|+..++.. .+.........
T Consensus 94 ~~l~d~~~~~~~~-l~~~--~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~-~~~t~~~~~~~~~~g~~d~~~~~~ 168 (470)
T d2bgra1 94 YDIYDLNKRQLIT-EERI--PNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPS-YRITWTGKEDIIYNGITDWVYEEE 168 (470)
T ss_dssp EEEEETTTTEECC-SSCC--CTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCC-EECCSCCBTTTEEESBCCHHHHHH
T ss_pred EEEEECCCCcccc-cccC--CccccccccccCcceeeEee-cccceEEECCCCce-eeeeeccCCCcccccccceeeeee
Confidence 8999999987543 3333 33688999999999999864 67899999887733 22221111000
Q ss_pred ccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCC---CCCCcccEEEEEeecCcccE
Q 001319 676 LRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPE---STDTSSKVVRLLYTNSAVGL 752 (1101)
Q Consensus 676 ~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~i~~~~~s~~~~~l 752 (1101)
.......+.|+|||+.+++.. .+......+.++. ..........+.+...+.
T Consensus 169 ~~~~~~~~~wSPDGk~ia~~~-----------------------~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~g~-- 223 (470)
T d2bgra1 169 VFSAYSALWWSPNGTFLAYAQ-----------------------FNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGA-- 223 (470)
T ss_dssp TSSSSBCEEECTTSSEEEEEE-----------------------EECTTCCEEEEEECCSTTCSSCEEEEEECCBTTS--
T ss_pred ecCCccccEECCCCCccceeE-----------------------ecCCcCceEEEEeeccCCCCCCeeeeeccccccc--
Confidence 111223345566665553221 1111111111100 000111111111111111
Q ss_pred EEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--C-C--e-
Q 001319 753 LALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--G-G--K- 826 (1101)
Q Consensus 753 ~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--d-g--~- 826 (1101)
...+..+.+|++............. .............+..+.|.+++++++... . + .
T Consensus 224 --~~~~~~~~v~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~r~~~~~~~ 287 (470)
T d2bgra1 224 --VNPTVKFFVVNTDSLSSVTNATSIQ--------------ITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVM 287 (470)
T ss_dssp --CCCEEEEEEEEGGGCCSSSCCCEEE--------------ECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEE
T ss_pred --cCCcceEEEEECCCcceeeeccccc--------------cCCccccCCCCceEEEEEEcCCCceeEEEeeccCCceEE
Confidence 0111233334433221110000000 000000001334567788999888766542 1 2 2
Q ss_pred -EEEEECCCceEEEEeeC------CCC-----CeeEEEEecC-CCCEEEEEeCCCcEEEEEeec-ceEEEeeccCCCCee
Q 001319 827 -ISLFNMMTFKVMTTFMS------PPP-----ASTFLAFHPQ-DNNIIAIGTEDSTIHIYNVRV-DEVKSKLKGHQKRIT 892 (1101)
Q Consensus 827 -i~vwd~~~~~~~~~~~~------~~~-----~i~~l~~s~~-~~~~la~g~~dg~v~iwd~~~-~~~~~~~~~h~~~V~ 892 (1101)
+..+|..++........ ... .-....+.+. ++.+++.+..||...||.+.. +.....+..+...|.
T Consensus 288 ~~~~~d~~tg~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~s~~dg~~~ly~~~~~g~~~~~lt~g~~~v~ 367 (470)
T d2bgra1 288 DICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEGYRHICYFQIDKKDCTFITKGTWEVI 367 (470)
T ss_dssp EEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTSCEEEEEEETTCSCCEESCCSSSCEE
T ss_pred EEEEecCCCCcEEEEEEEeeeeeeccceeecccCCCceeeecCCCcEEEEeccCcCceeEEEeccCCceeeeccCCeeEE
Confidence 33445556655433210 011 0112233332 344566777888776665542 333444444556677
Q ss_pred EEEEcCCCCEE-EEEeCCC----cEEEEEC--CCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe----CCeEEE
Q 001319 893 GLAFSTSLNIL-VSSGADA----QLCVWSI--DTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH----ETQLAI 961 (1101)
Q Consensus 893 ~l~~s~d~~~l-~s~s~Dg----~v~lwd~--~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~----d~~i~v 961 (1101)
.+ ++++++.+ +++..++ .-.||.+ ..+.. ..++..........+..++|||||++++... .-.+.+
T Consensus 368 ~~-~~~d~~~iyf~a~~~~~~p~~~~ly~v~~~g~~~--~~~lt~~~~~~~~~~~s~~fSpdgky~~~~~s~~~~P~~~l 444 (470)
T d2bgra1 368 GI-EALTSDYLYYISNEYKGMPGGRNLYKIQLSDYTK--VTCLSCELNPERCQYYSVSFSKEAKYYQLRCSGPGLPLYTL 444 (470)
T ss_dssp EE-EEECSSEEEEEESCGGGCTTCBEEEEEETTCTTC--EEESSTTTSTTTBCBEEEEECTTSSEEEEEECSBSSCEEEE
T ss_pred EE-EEECCCEEEEEEecCCCCcceEEEEEEECCCCCc--eeEecccccCCCCCEEEEEECCCCCEEEEEecCCCCCeEEE
Confidence 66 44445543 4444332 2245544 43221 1122211111225678999999999988633 235899
Q ss_pred EEcCCceeeeEecc
Q 001319 962 YDASKMERIRQWTP 975 (1101)
Q Consensus 962 ~d~~~~~~~~~~~~ 975 (1101)
|+..+++.+..+..
T Consensus 445 ~~~~~g~~v~~le~ 458 (470)
T d2bgra1 445 HSSVNDKGLRVLED 458 (470)
T ss_dssp EETTTTEEEEEEEC
T ss_pred EECCCCCEEEEEec
Confidence 99999999888864
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.51 E-value=8.2e-13 Score=145.10 Aligned_cols=319 Identities=9% Similarity=-0.075 Sum_probs=188.4
Q ss_pred CCcCeEEEecccCCCccEEEE-eccCCe--EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecC------CCCC
Q 001319 493 HEAPVYSICPHHKENIQFIFS-TAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTS------KDGD 563 (1101)
Q Consensus 493 h~~~v~~v~~~~~~~~~~l~s-~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~------~~~~ 563 (1101)
+.++...++..+++...+++. ...++. +.+||..+++....+..+... .++|+|||+++++.+.. +..+
T Consensus 18 ~~g~~~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d 95 (368)
T d1mdah_ 18 SDGSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRT 95 (368)
T ss_dssp CCCCCBCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEE
T ss_pred cCCCccccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccC
Confidence 444555555555433333332 344554 666688887776665554433 68999999999876531 2246
Q ss_pred ceEEEEeCCCCeeEEEecccCCc------ceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeE
Q 001319 564 SFLVEWNESEGTIKRTYAGFRKK------SNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLR 636 (1101)
Q Consensus 564 ~~i~iwd~~~~~~~~~~~~~~~~------~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~ 636 (1101)
+.|.+||..+++.+..+..+... ....++|+|||++++++. .++.+.+||+.+++....+..+... .+
T Consensus 96 ~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~----~~- 170 (368)
T d1mdah_ 96 DYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCF----HI- 170 (368)
T ss_dssp EEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCC----CC-
T ss_pred CeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcc----eE-
Confidence 78999999999998887654321 233589999999998876 6799999999999998888665321 11
Q ss_pred EecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEE
Q 001319 637 FSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIIL 716 (1101)
Q Consensus 637 ~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l 716 (1101)
+......++..+.||.+.+|+.................
T Consensus 171 ~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~------------------------------------------ 208 (368)
T d1mdah_ 171 HPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTG------------------------------------------ 208 (368)
T ss_dssp EEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCT------------------------------------------
T ss_pred ccCCCceEEEEcCCCCEEEEEecCCceeeeeeeccccc------------------------------------------
Confidence 12234466667778888888876552222111110000
Q ss_pred EEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEEEEecCCCCCCCCCeeeeccccccccCCccceee
Q 001319 717 AEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKLWKWHRNEQNPSGKATASAVPQHWLPSSGLLMAN 796 (1101)
Q Consensus 717 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 796 (1101)
.+...+....+.+++..+.. .++.+.++++..... ..++...+.....
T Consensus 209 ------------------~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~~~~~~------------~~~~~~~~~~~~~ 256 (368)
T d1mdah_ 209 ------------------AQNCSSQAAQANYPGMLVWA--VASSILQGDIPAAGA------------TMKAAIDGNESGR 256 (368)
T ss_dssp ------------------TSCBCSCCEEETTTTEEEEC--BSSCCEEEECCSSCC------------EEECCCCSSCTHH
T ss_pred ------------------ccccceeecccccCcEEEEe--cCCCEEEEeecCCce------------EEEeeccccccee
Confidence 01111122333344432222 223333443322110 0111111100000
Q ss_pred ccCCCCCCCCEeEEEecCCCCeEEEEc--C--------CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCC--EEEEE
Q 001319 797 DVAGVNLEEAVPCIALSKNDSYVMSAT--G--------GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNN--IIAIG 864 (1101)
Q Consensus 797 ~~~~~~~~~~v~~~~~s~dg~~la~~~--d--------g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~--~la~g 864 (1101)
.... ........+++++++..+.... + ..|.+||..+++.+..+.. ...+..++|+| |++ +++++
T Consensus 257 ~~~~-~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~~~~~~~a~sp-DG~~~ly~s~ 333 (368)
T d1mdah_ 257 KADN-FRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISN-GHDSDAIIAAQ-DGASDNYANS 333 (368)
T ss_dssp HHTT-EEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEE-EEEECEEEECC-SSSCEEEEEE
T ss_pred eeee-ecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecC-CCceeEEEECC-CCCEEEEEEe
Confidence 0000 0111223578889988765542 1 2499999999998887764 45688999999 765 35677
Q ss_pred eCCCcEEEEEeecceEEEeeccCCCCeeEEEE
Q 001319 865 TEDSTIHIYNVRVDEVKSKLKGHQKRITGLAF 896 (1101)
Q Consensus 865 ~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 896 (1101)
..|++|++||..+++.+..+..... ...|++
T Consensus 334 ~~~~~v~v~D~~tgk~~~~i~~g~~-P~~l~~ 364 (368)
T d1mdah_ 334 AGTEVLDIYDAASDQDQSSVELDKG-PESLSV 364 (368)
T ss_dssp TTTTEEEEEESSSCEEEEECCCCSC-CCEEEC
T ss_pred CCCCeEEEEECCCCCEEEEEECCCC-CCEEEE
Confidence 7899999999999999998875433 344444
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.51 E-value=7.7e-15 Score=158.52 Aligned_cols=334 Identities=12% Similarity=0.056 Sum_probs=210.3
Q ss_pred ceEEEEecCCceEEEEE-cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEE
Q 001319 465 LLCVVTCGDDKLIKVWE-LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTT 543 (1101)
Q Consensus 465 ~~~l~s~~~d~~v~iwd-~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~ 543 (1101)
++.++|++.+|.|++|| .+++.+.++. .|++++ .. ..+..+.+.+++. ..........|......
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~Ip---------Vfspd~--~~-g~g~~~es~~vl~--~~~~~~~gd~hhP~~s~ 76 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIP---------VFNVDS--AT-GWGITNESKEILG--GDQQYLNGDCHHPHISM 76 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEEC---------SSSBCT--TT-CTTTSHHHHHHHC--SSSCCSCCCBCCCEEEE
T ss_pred EEEEEeCCCCCcEEEEeCCCCcEEEEEE---------eEcCCC--CE-EEEECCccceEEe--cccccccCcccCCCcce
Confidence 34788999999999999 8898887774 255533 21 1222222222221 11111111223334555
Q ss_pred EEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCE--EEEEeCCC--------------
Q 001319 544 MLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNH--FLAVGEDS-------------- 607 (1101)
Q Consensus 544 ~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~~~dg-------------- 607 (1101)
..++|||++|++... .+..|.++|+.+++....+.-........++|+|+|+. ++..+++.
T Consensus 77 t~gtpDGr~lfV~d~---~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~ 153 (441)
T d1qnia2 77 TDGRYDGKYLFINDK---ANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDN 153 (441)
T ss_dssp ETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGG
T ss_pred ecccCCCCEEEEEcC---CCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCccccccccc
Confidence 556899999988764 47899999999999988776544557888999999984 44444332
Q ss_pred ---cEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCc-EEEEEccccccccccccCCCcccccCcceee
Q 001319 608 ---QIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNG-FKILANAIGLRSLRAVENPPFEALRTPIESV 683 (1101)
Q Consensus 608 ---~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~-i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~ 683 (1101)
.+..+|..+.+....+...+ ....++|+|+|+++++++.+.. +..++..+..
T Consensus 154 ~~~~~~~iD~~t~~v~~qI~v~~---~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~--------------------- 209 (441)
T d1qnia2 154 SYTMFTAIDAETMDVAWQVIVDG---NLDNTDADYTGKYATSTCYNSERAVDLAGTMRN--------------------- 209 (441)
T ss_dssp EEEEEEEEETTTCSEEEEEEESS---CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCS---------------------
T ss_pred ccceEEeecCccceeeEEEecCC---CccceEECCCCCEEEEEecCCCceEEEeccCcc---------------------
Confidence 23557888888777776544 3578999999999888776532 1111110000
Q ss_pred eeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeecCCeEEE
Q 001319 684 ALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGSNGVQKL 763 (1101)
Q Consensus 684 ~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~v~~ 763 (1101)
. -..+.+
T Consensus 210 -------------------------------------------------------~------------------~d~i~v 216 (441)
T d1qnia2 210 -------------------------------------------------------D------------------RDWVVV 216 (441)
T ss_dssp -------------------------------------------------------S------------------BCEEEE
T ss_pred -------------------------------------------------------e------------------EEEEEe
Confidence 0 001111
Q ss_pred EEecCCCCCCCCCeeeeccccccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeC
Q 001319 764 WKWHRNEQNPSGKATASAVPQHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMS 843 (1101)
Q Consensus 764 w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~ 843 (1101)
.++ -..+++++||+++..+.++.+.+++....+.+..+..
T Consensus 217 ~n~----------------------------------------p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPv 256 (441)
T d1qnia2 217 FNV----------------------------------------ERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPV 256 (441)
T ss_dssp EEH----------------------------------------HHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECC
T ss_pred CCc----------------------------------------cceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeC
Confidence 110 0123456788877776677788887777777777766
Q ss_pred CCCCeeEEEEecCCCCEE-EEEeCCCcEEEEEeecceEE--------EeeccC---CCCeeEEEEcCCCCEEEEEeCCCc
Q 001319 844 PPPASTFLAFHPQDNNII-AIGTEDSTIHIYNVRVDEVK--------SKLKGH---QKRITGLAFSTSLNILVSSGADAQ 911 (1101)
Q Consensus 844 ~~~~i~~l~~s~~~~~~l-a~g~~dg~v~iwd~~~~~~~--------~~~~~h---~~~V~~l~~s~d~~~l~s~s~Dg~ 911 (1101)
.. ....+.++| ||+++ +++..+++|.|||+.+.+.. ..+.++ .-.....+|.++|..+.+.+.|.+
T Consensus 257 gk-sPhGv~vSP-DGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~ 334 (441)
T d1qnia2 257 PK-NPHGLNTSP-DGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQ 334 (441)
T ss_dssp BS-SCCCEEECT-TSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTE
T ss_pred CC-CccCceECC-CCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccce
Confidence 43 467899999 77765 56678999999998753210 011111 112345689999999999999999
Q ss_pred EEEEECCCC------c----cccceEEeecCCCCCCCcceEEEcCCCCEEEEEe
Q 001319 912 LCVWSIDTW------E----KRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH 955 (1101)
Q Consensus 912 v~lwd~~~~------~----~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 955 (1101)
|..|++... + ......++...||. ..+.+.+++|||++|+++.
T Consensus 335 v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~-~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 335 VCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHN-HASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEE-EETTTTSTTCCCCEEEEEE
T ss_pred EEEeccchhhhhhccCCCceeEeccccccCCCCC-ccccccccCCCCcEEEecC
Confidence 999998521 1 11122233334444 5567778999999999974
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.48 E-value=7.8e-14 Score=150.56 Aligned_cols=327 Identities=12% Similarity=-0.009 Sum_probs=204.1
Q ss_pred CceEEEEEeccCcEEEEecCCCceeccccce------eecccccCccc-----cccccccCCccEEEEEEccCCCEEEEE
Q 001319 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFK------IWDMAACSLPF-----QASIFKDVPISVSRVAWSPDGNYVGVA 424 (1101)
Q Consensus 356 g~~llasg~~d~~i~iwd~~~~~~~~~~~~~------~~d~~~~~~~~-----~~~~~~~h~~~v~~~~~spdg~~las~ 424 (1101)
+-|.+++|+.+|.|++|++.+++.+..-++. .|-....+..+ .......|........++|||++|++.
T Consensus 10 e~y~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~ 89 (441)
T d1qnia2 10 EYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFIN 89 (441)
T ss_dssp SEEEEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEE
T ss_pred CEEEEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEE
Confidence 3467889999999999999999877643221 11111000000 001123355567778889999999776
Q ss_pred E-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCc-----------------eEEEEE-cCCc
Q 001319 425 F-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDK-----------------LIKVWE-LSGR 485 (1101)
Q Consensus 425 ~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~-----------------~v~iwd-~~~~ 485 (1101)
. .++.|.++|+++++..+... ..+...+..++|+|||+..+++..+.+. .+..+| .+.+
T Consensus 90 d~~~~rVavIDl~t~k~~~ii~--iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~~t~~ 167 (441)
T d1qnia2 90 DKANTRVARIRLDIMKTDKITH--IPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDAETMD 167 (441)
T ss_dssp ETTTTEEEEEETTTTEEEEEEE--CTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEETTTCS
T ss_pred cCCCCEEEEEECCCCcEeeEEe--cCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecCccce
Confidence 5 67899999999987655221 2456789999999999976666555432 234577 6666
Q ss_pred eeEEeecCCcCeEEEecccCCCccEEEEeccCC-eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 486 KLFNFEGHEAPVYSICPHHKENIQFIFSTAIDG-KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 486 ~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~-~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
....+... +....+.+++ +|+++++++.+. .+..++..+......+.. ......+.++++|+++..++ ++
T Consensus 168 v~~qI~v~-~~p~~v~~sp--dGk~a~vt~~nse~~~~id~~t~~~~d~i~v-~n~p~~~~~~~dGk~~~v~~-----~~ 238 (441)
T d1qnia2 168 VAWQVIVD-GNLDNTDADY--TGKYATSTCYNSERAVDLAGTMRNDRDWVVV-FNVERIAAAVKAGNFKTIGD-----SK 238 (441)
T ss_dssp EEEEEEES-SCCCCEEECS--SSSEEEEEESCTTCCSSHHHHTCSSBCEEEE-EEHHHHHHHHHTTCCBCCTT-----CC
T ss_pred eeEEEecC-CCccceEECC--CCCEEEEEecCCCceEEEeccCcceEEEEEe-CCccceEEEecCCCEEEeCC-----CC
Confidence 66555533 3467778876 667887776543 232222222221111100 01112345678999887653 66
Q ss_pred eEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEE-eCCCcEEEEECCCCeee--------Eeecc--CCCCCCCC
Q 001319 565 FLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAV-GEDSQIKFWDMDNVNIL--------TSTDA--EGGLPNLP 633 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-~~dg~i~iwd~~~~~~~--------~~~~~--~~~~~~v~ 633 (1101)
.+.+++....+.++.+..... ...+.++|||++++++ ..+++|.+||+.+.... ..+.. ..+. ...
T Consensus 239 v~vvd~~~~~~v~~~IPvgks--PhGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~gl-gpl 315 (441)
T d1qnia2 239 VPVVDGRGESEFTRYIPVPKN--PHGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGL-GPL 315 (441)
T ss_dssp CCEEECSSSCSSEEEECCBSS--CCCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCS-CEE
T ss_pred cEEEEcccCCceEEEEeCCCC--ccCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeeccccc-Ccc
Confidence 778888777777777776543 5568999999998764 58999999998653211 01111 1111 123
Q ss_pred eeEEecCCCEEEEEEcCCcEEEEEccccc---------cccccccCCCcccccCcceeeeeeeccccccccC
Q 001319 634 RLRFSKEGNLLAVTTADNGFKILANAIGL---------RSLRAVENPPFEALRTPIESVALKVSASSAVSSG 696 (1101)
Q Consensus 634 ~v~~s~~g~~l~~~~~d~~i~iwd~~~~~---------~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~ 696 (1101)
..+|+++|....+...|..|..|++.... ..+..+.-+-...+...+.+..++|||++++++.
T Consensus 316 h~~fd~~g~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~ 387 (441)
T d1qnia2 316 HTTFDGRGNAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLS 387 (441)
T ss_dssp EEEECSSSEEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEE
T ss_pred cceecCCceEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecC
Confidence 45899999888888899999999985321 1222232332344555667788999999986553
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.19 E-value=2.6e-08 Score=107.48 Aligned_cols=162 Identities=14% Similarity=0.147 Sum_probs=104.1
Q ss_pred CCEeEEEecCCCCeEEEEc--CCeEEEEECCC-ceEE--EEee--CCCCCeeEEEEecCCCCEEEEEe-CCCcEEEEEee
Q 001319 805 EAVPCIALSKNDSYVMSAT--GGKISLFNMMT-FKVM--TTFM--SPPPASTFLAFHPQDNNIIAIGT-EDSTIHIYNVR 876 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~-~~~~--~~~~--~~~~~i~~l~~s~~~~~~la~g~-~dg~v~iwd~~ 876 (1101)
..+.+++|+|||+++++++ .++|.+|+... +... .... ........++|+| +++++.+.. .+++|.+|++.
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~p-dg~~~yv~~e~~~~V~v~~~~ 223 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHP-TGNYLYALMEAGNRICEYVID 223 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECT-TSSEEEEEETTTTEEEEEEEC
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECC-CCceEEEeccCCCEEEEEEec
Confidence 3467899999999888886 46788887643 3322 2222 2345788999999 777775544 67899999997
Q ss_pred cceEEE-----eec--------------cCCCCeeEEEEcCCCCEEEEEeC------CCcEEEEECCCCccccceEEeec
Q 001319 877 VDEVKS-----KLK--------------GHQKRITGLAFSTSLNILVSSGA------DAQLCVWSIDTWEKRKSVTIHIP 931 (1101)
Q Consensus 877 ~~~~~~-----~~~--------------~h~~~V~~l~~s~d~~~l~s~s~------Dg~v~lwd~~~~~~~~~~~~~~~ 931 (1101)
.++... ... .+......+.++|||++|+++.. .+.|..|++..............
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~ 303 (365)
T d1jofa_ 224 PATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSP 303 (365)
T ss_dssp TTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEE
T ss_pred CCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeE
Confidence 653221 110 12223567899999999887743 22377777765332222111111
Q ss_pred CCCCCCCcceEEEcC-CCCEEEEEe--CCeEEEEEcCCc
Q 001319 932 AGKTPTGDTRVQFNA-DQVRMLVVH--ETQLAIYDASKM 967 (1101)
Q Consensus 932 ~~~~~~~v~~~~~s~-d~~~l~~~~--d~~i~v~d~~~~ 967 (1101)
..........++++| +|++|+++. ++.|.+|+.+..
T Consensus 304 ~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 304 TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred EEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 111114567799998 899988864 789999987543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=99.17 E-value=5.3e-09 Score=113.03 Aligned_cols=258 Identities=10% Similarity=0.023 Sum_probs=152.1
Q ss_pred CCCCEeEEEecCCCCeEEEEcCCeEEEEECCC-ceEEEEe-eCCCCCeeEEEEecCCCCEE--EEEe-CCCcEEEEEeec
Q 001319 803 LEEAVPCIALSKNDSYVMSATGGKISLFNMMT-FKVMTTF-MSPPPASTFLAFHPQDNNII--AIGT-EDSTIHIYNVRV 877 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~dg~i~vwd~~~-~~~~~~~-~~~~~~i~~l~~s~~~~~~l--a~g~-~dg~v~iwd~~~ 877 (1101)
....+..+++++|++.|.++..+.+..|.+.. +...... .........+++++ +++.+ +++. ..++|..+.+..
T Consensus 38 ~~~~~s~la~s~d~~~ly~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~-~~~~~~v~~a~~~~~~v~~~~~~~ 116 (365)
T d1jofa_ 38 QDEPISWMTFDHERKNIYGAAMKKWSSFAVKSPTEIVHEASHPIGGHPRANDADT-NTRAIFLLAAKQPPYAVYANPFYK 116 (365)
T ss_dssp TTCCCSEEEECTTSSEEEEEEBTEEEEEEEEETTEEEEEEEEECCSSGGGGCTTS-CCEEEEEEECSSTTCCEEEEEESS
T ss_pred CCCCCCEEEEcCCCCEEEEEeCCcEEEEEEeCCCCeEEEeeecCCCCcEEEEECC-CCCEEEEEEecCCCCEEEEeEccC
Confidence 34456679999999999888877888776653 2232221 22234567788888 77643 3322 345666655432
Q ss_pred c-eE---------------EE-eeccCCCCeeEEEEcCCCCEEEEEeC-CCcEEEEECCCCccccceEEeecCCCCCCCc
Q 001319 878 D-EV---------------KS-KLKGHQKRITGLAFSTSLNILVSSGA-DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGD 939 (1101)
Q Consensus 878 ~-~~---------------~~-~~~~h~~~V~~l~~s~d~~~l~s~s~-Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v 939 (1101)
. .. .. .-......+.+++|+|||+++++++. ...|.+|++.....+.... ...........
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~-~~~~~~~g~gP 195 (365)
T d1jofa_ 117 FAGYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVG-SVDAPDPGDHP 195 (365)
T ss_dssp SCCEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEE-EEECSSTTCCE
T ss_pred CCCcceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeecc-ceeecCCCCce
Confidence 1 00 00 01112234789999999998888764 3468888765433222111 11111122678
Q ss_pred ceEEEcCCCCEEEEEe--CCeEEEEEcCCceeeeE-----ecc-----------CCCCCCCEEEEEEccCCCEEEEEeC-
Q 001319 940 TRVQFNADQVRMLVVH--ETQLAIYDASKMERIRQ-----WTP-----------QDALSAPISCAVYSCNSQLVFATFC- 1000 (1101)
Q Consensus 940 ~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~~-----~~~-----------~~~h~~~v~~v~~s~dg~~l~s~~~- 1000 (1101)
+.++|+|+++++.+.. +++|.+|+.+..+.... ... ...+......+.++|||++|+++..
T Consensus 196 r~i~f~pdg~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~ 275 (365)
T d1jofa_ 196 RWVAMHPTGNYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRA 275 (365)
T ss_dssp EEEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEE
T ss_pred EEEEECCCCceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEccc
Confidence 8999999999998854 78999999876543221 110 0011234678899999999987642
Q ss_pred -----CCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEE-EEECCCeEEEEeCCCCC
Q 001319 1001 -----DGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFA-IGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1001 -----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~-s~~~Dg~v~iWd~~~~~ 1068 (1101)
.+.|..|++.....+......... ......+.+++++|.++.+|+ +...++.|.+|++....
T Consensus 276 ~~~~~~~~i~~~~~~~~g~~~~~~~~~~~------~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~~ 343 (365)
T d1jofa_ 276 NKFELQGYIAGFKLRDCGSIEKQLFLSPT------PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDEF 343 (365)
T ss_dssp SSTTSCCEEEEEEECTTSCEEEEEEEEEC------SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETTE
T ss_pred CCCccceEEEEEEecCCCceeeEeEeeEE------EcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCCc
Confidence 223777887653222211100000 112223456889986677555 44678999999876543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.13 E-value=2.1e-08 Score=111.70 Aligned_cols=373 Identities=9% Similarity=0.015 Sum_probs=200.8
Q ss_pred EEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC--CcceEEEEEeCCCCEEEEEe---------CCCcEEEEE
Q 001319 545 LYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR--KKSNGVVQFDTTQNHFLAVG---------EDSQIKFWD 613 (1101)
Q Consensus 545 ~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~l~~~~---------~dg~i~iwd 613 (1101)
.|.+++.++... .++.|.+||+.+++....+.... ...+....|+||+++++... ..+.+.++|
T Consensus 23 ~W~~~~~~~~~~-----~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d 97 (465)
T d1xfda1 23 KWISDTEFIYRE-----QKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK 97 (465)
T ss_dssp CBSSSSCBCCCC-----SSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred EEeCCCcEEEEe-----CCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEE
Confidence 467777765432 36679999998887654444332 22456678999999988764 357889999
Q ss_pred CCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeecccccc
Q 001319 614 MDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAV 693 (1101)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~ 693 (1101)
+.++..............+....|||||+.+|... ++.|.+.+..++.. .+........ .+
T Consensus 98 ~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~-~~lt~~g~~~----------------~i- 158 (465)
T d1xfda1 98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQA-IRVVSTGKEG----------------VI- 158 (465)
T ss_dssp SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCC-EEEECCCBTT----------------TE-
T ss_pred ccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCce-EEEecccCcc----------------ee-
Confidence 99887655444333344567799999999998876 56777777665422 1111110000 00
Q ss_pred ccCCCCCcceeccCCCCCCceEEEEEEeCCCeEEEEcCCCCCCcccEEEEEeecCcccEEEeec-CCeEEEEEecCCC--
Q 001319 694 SSGTPANCKVERSSPVRPSPIILAEIVDSGQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALGS-NGVQKLWKWHRNE-- 770 (1101)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~-dg~v~~w~~~~~~-- 770 (1101)
.....+. + .. ......-.++.|||||++|+.... +..+..+.+....
T Consensus 159 ----------------------~nG~~d~-----v-ye--ee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~ 208 (465)
T d1xfda1 159 ----------------------YNGLSDW-----L-YE--EEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGS 208 (465)
T ss_dssp ----------------------EEEECCH-----H-HH--HTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSS
T ss_pred ----------------------eccccch-----h-hh--hhhccccceEEECCCCCeEEEEEecccccceeeccccccc
Confidence 0000000 0 00 000011134566777777666553 2444444443211
Q ss_pred C---------CCCCCeeeeccccccccCCccceeeccCC---CCCCCCEeEEEecCCCCeEEEEcC-----CeEEEEECC
Q 001319 771 Q---------NPSGKATASAVPQHWLPSSGLLMANDVAG---VNLEEAVPCIALSKNDSYVMSATG-----GKISLFNMM 833 (1101)
Q Consensus 771 ~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~s~dg~~la~~~d-----g~i~vwd~~ 833 (1101)
. ...|.......+.+++..++......... .....-+..+.|++|+++++...+ ..+.++|..
T Consensus 209 ~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~ 288 (465)
T d1xfda1 209 IYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDAT 288 (465)
T ss_dssp SSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETT
T ss_pred ccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCC
Confidence 0 11122222223445555554422211111 012334678999999987776542 248889999
Q ss_pred CceEEEEeeCCCC-C----eeEEEEecCCCCEE-E--EEeCCC--cEEEEEee------cceEEEeeccCCCCeeEE-EE
Q 001319 834 TFKVMTTFMSPPP-A----STFLAFHPQDNNII-A--IGTEDS--TIHIYNVR------VDEVKSKLKGHQKRITGL-AF 896 (1101)
Q Consensus 834 ~~~~~~~~~~~~~-~----i~~l~~s~~~~~~l-a--~g~~dg--~v~iwd~~------~~~~~~~~~~h~~~V~~l-~~ 896 (1101)
++++...+..... . -....|++ +++.+ . ....+| .++...+. .++.+..+....-.|..+ +|
T Consensus 289 tg~~~~~~~e~~~~wv~~~~~~p~~~~-dg~~~~fi~~se~~g~~~ly~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~ 367 (465)
T d1xfda1 289 TGVCTKKHEDESEAWLHRQNEEPVFSK-DGRKFFFIRAIPQGGRGKFYHITVSSSQPNSSNDNIQSITSGDWDVTKILAY 367 (465)
T ss_dssp TCCEEEEEEEECSSCCCCCCCCCEECT-TSCSEEEEEEECCSSSSCEEEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEE
T ss_pred CCcEEEEEEEcCCceEeccCCceeEcc-CCCeeEEEEeeeecccCceEEEEeccccccCCCceeEEeccCCceEEEEEEE
Confidence 9987766543221 1 23467888 66532 2 222333 44444433 233334444334456664 68
Q ss_pred cCCCCEEE-EEeCC--CcEEEEECC--CCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeC----CeEEEEEcCCc
Q 001319 897 STSLNILV-SSGAD--AQLCVWSID--TWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHE----TQLAIYDASKM 967 (1101)
Q Consensus 897 s~d~~~l~-s~s~D--g~v~lwd~~--~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d----~~i~v~d~~~~ 967 (1101)
..+++.+. ++..+ +.-.+|.+. .+... .++...... ......+.|||++++++.... -.+.+++..++
T Consensus 368 d~~~~~vyF~a~~~~p~~~hly~v~l~g~~~~--~~lt~~~~~-~~~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~ 444 (465)
T d1xfda1 368 DEKGNKIYFLSTEDLPRRRQLYSANTVGNFNR--QCLSCDLVE-NCTYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDK 444 (465)
T ss_dssp ETTTTEEEEEESSSCTTCCEEEEECSSTTCCC--BCSSTTSSS-SCCCCEEEECTTSSEEEEECCSSSSCCEEEEETTTC
T ss_pred cCCCCEEEEEEeCCCCCceEEEEEECCCCCcc--eeeccccCC-CCCEEEEEECCCCCEEEEEeecCCCCeEEEEECCCC
Confidence 88877664 44433 233455543 32211 111111111 145678999999999987432 34677777777
Q ss_pred eeeeEecc
Q 001319 968 ERIRQWTP 975 (1101)
Q Consensus 968 ~~~~~~~~ 975 (1101)
+.+..+..
T Consensus 445 ~~~~~Le~ 452 (465)
T d1xfda1 445 KKMFDLET 452 (465)
T ss_dssp CEEEEEEC
T ss_pred CEEEEEcC
Confidence 77776653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.13 E-value=1.3e-08 Score=105.24 Aligned_cols=224 Identities=11% Similarity=0.106 Sum_probs=136.4
Q ss_pred cccCCccEEEEEEccCCCEEEEEECCC---eEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEE
Q 001319 402 FKDVPISVSRVAWSPDGNYVGVAFTKH---LIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIK 478 (1101)
Q Consensus 402 ~~~h~~~v~~~~~spdg~~las~~~d~---~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~ 478 (1101)
+..+...+.+.+|||||++||...... .+.+.+..++... .+..+.+......|+|||+.+ +.....++...
T Consensus 34 l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~spdg~~i-~~~~~~~~~~~ 108 (269)
T d2hqsa1 34 VHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVR----QVASFPRHNGAPAFSPDGSKL-AFALSKTGSLN 108 (269)
T ss_dssp EEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEE----EEECCSSCEEEEEECTTSSEE-EEEECTTSSCE
T ss_pred EecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCcee----EEeeeecccccceecCCCCee-eEeeecCCccc
Confidence 344567788999999999999875433 4666666665432 355678889999999999963 33333343333
Q ss_pred EEE--cCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCe--EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEE
Q 001319 479 VWE--LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLF 554 (1101)
Q Consensus 479 iwd--~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~ 554 (1101)
++. ....................+++... ..+++...++. |...++...... .............++|+++.++
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~g~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~spdg~~~~ 186 (269)
T d2hqsa1 109 LYVMDLASGQIRQVTDGRSNNTEPTWFPDSQ-NLAFTSDQAGRPQVYKVNINGGAPQ-RITWEGSQNQDADVSSDGKFMV 186 (269)
T ss_dssp EEEEETTTCCEEECCCCSSCEEEEEECTTSS-EEEEEECTTSSCEEEEEETTSSCCE-ECCCSSSEEEEEEECTTSSEEE
T ss_pred eeecccccccceeeeeccccccccccccccc-cceecccccCCceEeeeecccccce-eeecccccccccccccccceeE
Confidence 333 33232333333333344444544433 34555555554 444455444333 3334455677889999999999
Q ss_pred EeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe---CCCcEEEEECCCCeeeEeeccCCCCCC
Q 001319 555 SCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG---EDSQIKFWDMDNVNILTSTDAEGGLPN 631 (1101)
Q Consensus 555 ~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~---~dg~i~iwd~~~~~~~~~~~~~~~~~~ 631 (1101)
.... ..+...+.+.+...+..... . ... ......|+|||+.|+..+ ....|+++++..+........ . ..
T Consensus 187 ~~~~-~~~~~~i~~~~~~~~~~~~~-~-~~~-~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~-~--g~ 259 (269)
T d2hqsa1 187 MVSS-NGGQQHIAKQDLATGGVQVL-S-STF-LDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT-D--GQ 259 (269)
T ss_dssp EEEE-CSSCEEEEEEETTTCCEEEC-C-CSS-SCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS-S--SE
T ss_pred EEee-cCCceeeeEeecccccceEe-e-cCc-cccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC-C--Cc
Confidence 8765 23445666677666654322 2 222 455678999999988655 345789999987765443332 2 24
Q ss_pred CCeeEEec
Q 001319 632 LPRLRFSK 639 (1101)
Q Consensus 632 v~~v~~s~ 639 (1101)
+...+|||
T Consensus 260 ~~~p~WSP 267 (269)
T d2hqsa1 260 VKFPAWSP 267 (269)
T ss_dssp EEEEEECC
T ss_pred EEeEEeCC
Confidence 56778887
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=99.12 E-value=1.8e-08 Score=105.71 Aligned_cols=241 Identities=10% Similarity=0.048 Sum_probs=157.0
Q ss_pred CcceeEeecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEE
Q 001319 334 PRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVA 413 (1101)
Q Consensus 334 ~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~ 413 (1101)
|.+++..++-...+..++++|||+ |+++...+++|..|+....... +......+.+++
T Consensus 17 ~~~v~~~~p~~~~~e~iAv~pdG~-l~vt~~~~~~I~~i~p~g~~~~---------------------~~~~~~~~~gla 74 (302)
T d2p4oa1 17 PAKIITSFPVNTFLENLASAPDGT-IFVTNHEVGEIVSITPDGNQQI---------------------HATVEGKVSGLA 74 (302)
T ss_dssp CEEEEEEECTTCCEEEEEECTTSC-EEEEETTTTEEEEECTTCCEEE---------------------EEECSSEEEEEE
T ss_pred cccEEEECCCCCCcCCEEECCCCC-EEEEeCCCCEEEEEeCCCCEEE---------------------EEcCCCCcceEE
Confidence 444555666555799999999998 7788888998888886533221 333556899999
Q ss_pred EccCCCEEEEEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee-
Q 001319 414 WSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE- 491 (1101)
Q Consensus 414 ~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~- 491 (1101)
|+|||+++++...++.+..|+....................+.+++.++++ ++++.+.++.+..+| ..+.......
T Consensus 75 ~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~--~~v~~~~~~~i~~~~~~~~~~~~~~~~ 152 (302)
T d2p4oa1 75 FTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQ--YLTADSYRGAIWLIDVVQPSGSIWLEH 152 (302)
T ss_dssp ECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSE--EEEEETTTTEEEEEETTTTEEEEEEEC
T ss_pred EcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCC--EEeeccccccceeeeccCCcceeEecC
Confidence 999999999988888898888876443221111123455689999999998 788888888888888 4443221111
Q ss_pred ---------cCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec--cCCCCceEEEEEccCCCEEEEeecCC
Q 001319 492 ---------GHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 492 ---------~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
........+.+. ++.++++.+..+.|..+++......... .........+++.++|++.++...
T Consensus 153 ~~~~~~~~~~~~~~~ngi~~~---~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l~va~~~-- 227 (302)
T d2p4oa1 153 PMLARSNSESVFPAANGLKRF---GNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATHI-- 227 (302)
T ss_dssp GGGSCSSTTCCSCSEEEEEEE---TTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECBT--
T ss_pred CccceeeccCccccccccccc---CCceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCEEEEEcC--
Confidence 111234455442 2356677778888988887654432211 112334567999999997776543
Q ss_pred CCCceEEEEeCCCCeeEEEeccc-CCcceEEEEE---eCCCCEEEEEeCC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQF---DTTQNHFLAVGED 606 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~---~~~~~~l~~~~~d 606 (1101)
++.|..++... +........ .-.....++| ++|++.|++++..
T Consensus 228 --~~~V~~i~p~G-~~~~~~~~~~~~~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 228 --YNSVVRIAPDR-STTIIAQAEQGVIGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp --TCCEEEECTTC-CEEEEECGGGTCTTEEEEEECCSTTTTTEEEEEECT
T ss_pred --CCcEEEECCCC-CEEEEEecCCCCCCceEEEEcCCCCCCCEEEEECCC
Confidence 67788888764 333332221 1124678999 5677877766543
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=99.08 E-value=2.6e-08 Score=102.75 Aligned_cols=241 Identities=13% Similarity=0.073 Sum_probs=150.7
Q ss_pred ccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccC--cEEEEecCCCceeccccceeecccccCcccccccccc
Q 001319 327 TWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG--EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKD 404 (1101)
Q Consensus 327 ~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~--~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 404 (1101)
+|-.+.--......+.+...+..-+|||||++|+.+....+ .+.+.+..++.... +..
T Consensus 21 l~i~d~dG~~~~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~--------------------~~~ 80 (269)
T d2hqsa1 21 LRVSDYDGYNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ--------------------VAS 80 (269)
T ss_dssp EEEEETTSCSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE--------------------EEC
T ss_pred EEEEcCCCCCcEEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeE--------------------Eee
Confidence 45444333444555567788999999999998755554444 35555555444322 445
Q ss_pred CCccEEEEEEccCCCEEEEEEC-CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE--
Q 001319 405 VPISVSRVAWSPDGNYVGVAFT-KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-- 481 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~~-d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-- 481 (1101)
+.+.+....|||||+.++.... ++...++......... ..............+++++.. .+++...++...+|.
T Consensus 81 ~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~g~~~i~~~~ 157 (269)
T d2hqsa1 81 FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQI--RQVTDGRSNNTEPTWFPDSQN-LAFTSDQAGRPQVYKVN 157 (269)
T ss_dssp CSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCE--EECCCCSSCEEEEEECTTSSE-EEEEECTTSSCEEEEEE
T ss_pred eecccccceecCCCCeeeEeeecCCccceeecccccccc--eeeeecccccccccccccccc-ceecccccCCceEeeee
Confidence 7788899999999999987654 3333333333322111 123344555666778888875 455555666555554
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCccEEEEecc-CCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCC
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAI-DGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSK 560 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~-d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~ 560 (1101)
..+.....+..+........|++ ++..++..+. .+...+|..+...................|||||++|+..+. .
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~sp--dg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~p~~SPDG~~i~f~s~-~ 234 (269)
T d2hqsa1 158 INGGAPQRITWEGSQNQDADVSS--DGKFMVMVSSNGGQQHIAKQDLATGGVQVLSSTFLDETPSLAPNGTMVIYSSS-Q 234 (269)
T ss_dssp TTSSCCEECCCSSSEEEEEEECT--TSSEEEEEEECSSCEEEEEEETTTCCEEECCCSSSCEEEEECTTSSEEEEEEE-E
T ss_pred cccccceeeeccccccccccccc--ccceeEEEeecCCceeeeEeecccccceEeecCccccceEECCCCCEEEEEEc-C
Confidence 55555566666666677778877 4556655544 455555555544444444445556778899999999987654 2
Q ss_pred CCCceEEEEeCCCCeeEEEecccCCcceEEEEEeC
Q 001319 561 DGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDT 595 (1101)
Q Consensus 561 ~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~ 595 (1101)
.+...|+++++..+...+ +..... .+...+|+|
T Consensus 235 ~~~~~l~~~~~dg~~~~~-lt~~~g-~~~~p~WSP 267 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFKAR-LPATDG-QVKFPAWSP 267 (269)
T ss_dssp TTEEEEEEEETTSCCEEE-CCCSSS-EEEEEEECC
T ss_pred CCCcEEEEEECCCCCEEE-EeCCCC-cEEeEEeCC
Confidence 346789999998776544 433333 566778887
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.97 E-value=8.5e-08 Score=97.87 Aligned_cols=240 Identities=7% Similarity=-0.040 Sum_probs=151.4
Q ss_pred CCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEE
Q 001319 343 QGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVG 422 (1101)
Q Consensus 343 h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~la 422 (1101)
+.-....|+++++|+.+++..+..+.|..++......... ..+-......++++++|+.++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~-------------------~~~~~~~p~gvav~~~g~i~v 72 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVL-------------------PFNGLYQPQGLAVDGAGTVYV 72 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEEC-------------------CCCSCCSCCCEEECTTCCEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEe-------------------ccCCccCceEEEEcCCCCEEE
Confidence 3446789999999985544445567777777654432210 111123456889999999887
Q ss_pred EEECCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEee-cCCcCeEEEe
Q 001319 423 VAFTKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFE-GHEAPVYSIC 501 (1101)
Q Consensus 423 s~~~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~-~h~~~v~~v~ 501 (1101)
+....+.+++++-.++..+. .. .......++++.++++ ++++-.....+..++..+.....+. .......+++
T Consensus 73 ~d~~~~~i~~~~~~~~~~~~---~~-~~~~~p~~iavd~~g~--i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~ 146 (260)
T d1rwia_ 73 TDFNNRVVTLAAGSNNQTVL---PF-DGLNYPEGLAVDTQGA--VYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVA 146 (260)
T ss_dssp EETTTEEEEECTTCSCCEEC---CC-CSCCSEEEEEECTTCC--EEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEE
T ss_pred eeeeeceeeeeeeccceeee---ee-eeeeecccccccccce--eEeeccccccccccccccceeeeeeecccCCcceee
Confidence 77666667666655544332 12 2234578999999998 6666666677778884444433322 2233457788
Q ss_pred cccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEec
Q 001319 502 PHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYA 581 (1101)
Q Consensus 502 ~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~ 581 (1101)
+.+ ++.++++...++.|..++.+.................+++.++|+++++... .+.|..++...... ..+.
T Consensus 147 ~~~--~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~----~~~i~~~~~~~~~~-~~~~ 219 (260)
T d1rwia_ 147 VDN--SGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHN----TNQVVKLLAGSTTS-TVLP 219 (260)
T ss_dssp ECT--TCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETT----TTEEEEECTTCSCC-EECC
T ss_pred ecC--CCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecC----CCEEEEEeCCCCeE-EEEc
Confidence 865 5678888888899999987765544433344456789999999988777653 67788887654432 2222
Q ss_pred ccCCcceEEEEEeCCCCEEEEEeCCCcEEEEEC
Q 001319 582 GFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDM 614 (1101)
Q Consensus 582 ~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~ 614 (1101)
...-.....++++++|+.+++-..++.|+.++.
T Consensus 220 ~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 220 FTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp CCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred cCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence 221124567899998877666566666665543
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=6.9e-07 Score=99.03 Aligned_cols=258 Identities=12% Similarity=0.093 Sum_probs=144.3
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC----
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT---- 426 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~---- 426 (1101)
.|.+++.++ . -..+|.|.+||+.+++.... .+ ...+ ....+....|||||++|+....
T Consensus 23 ~W~~~~~~~-~-~~~~g~i~~~~~~~~~~~~l-----~~---------~~~~--~~~~~~~~~~SpD~~~vl~~~~~~~~ 84 (465)
T d1xfda1 23 KWISDTEFI-Y-REQKGTVRLWNVETNTSTVL-----IE---------GKKI--ESLRAIRYEISPDREYALFSYNVEPI 84 (465)
T ss_dssp CBSSSSCBC-C-CCSSSCEEEBCGGGCCCEEE-----EC---------TTTT--TTTTCSEEEECTTSSEEEEEESCCCC
T ss_pred EEeCCCcEE-E-EeCCCcEEEEECCCCCEEEE-----Ec---------Cccc--cccccceeEECCCCCeEEEEEcccce
Confidence 477888743 3 34678999999988764321 00 0011 2235677889999999988743
Q ss_pred -----CCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEee-cCCcCe--
Q 001319 427 -----KHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNFE-GHEAPV-- 497 (1101)
Q Consensus 427 -----d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~~-~h~~~v-- 497 (1101)
.+.+.++|+.+++... +.........+....|||||+. +|-.. ++.|.+.+ ..+..++... +..+.|
T Consensus 85 ~r~s~~~~~~i~d~~~~~~~~-l~~~~~~~~~l~~~~wSPDG~~--iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~n 160 (465)
T d1xfda1 85 YQHSYTGYYVLSKIPHGDPQS-LDPPEVSNAKLQYAGWGPKGQQ--LIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYN 160 (465)
T ss_dssp SSSCCCSEEEEEESSSCCCEE-CCCTTCCSCCCSBCCBCSSTTC--EEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEE
T ss_pred eEeeccccEEEEEccCCceee-ccCccCCccccceeeeccCCce--EEEEe-cceEEEEecCCCceEEEecccCcceeec
Confidence 5678999999886432 1122234456777899999996 33332 66788888 5554443322 222222
Q ss_pred ---------------EEEecccCCCccEEEEeccC-CeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 498 ---------------YSICPHHKENIQFIFSTAID-GKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 498 ---------------~~v~~~~~~~~~~l~s~~~d-~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
.++.|+| ||+.|+....| ..|..+.+..... .....+..+.+..-|.. .
T Consensus 161 G~~d~vyeee~~~~~~a~~WSP--Dgk~iaf~~~D~s~V~~~~~~~~~~-----~~~p~~~~~~Yp~~G~~--------n 225 (465)
T d1xfda1 161 GLSDWLYEEEILKTHIAHWWSP--DGTRLAYAAINDSRVPIMELPTYTG-----SIYPTVKPYHYPKAGSE--------N 225 (465)
T ss_dssp EECCHHHHHTTSSSSEEEEECT--TSSEEEEEEEECTTSCEEEECCCSS-----SSSCCCEEEECCBTTSC--------C
T ss_pred cccchhhhhhhccccceEEECC--CCCeEEEEEecccccceeecccccc-----cccceeeeeeccccCCC--------C
Confidence 3555766 66788776543 3344443321100 01112233333222211 1
Q ss_pred CCceEEEEeCCCCeeEEEecc-----cCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCeeeEeeccCCCC---
Q 001319 562 GDSFLVEWNESEGTIKRTYAG-----FRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNILTSTDAEGGL--- 629 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~~~~~~~~~~~--- 629 (1101)
....+.++|+.++........ ....-+..+.|+++++.++... ....+.++|..+++....+......
T Consensus 226 p~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~ 305 (465)
T d1xfda1 226 PSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLH 305 (465)
T ss_dssp CEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCC
T ss_pred CceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEe
Confidence 133577888876654332211 1122356688999987665533 2235888999998776554322110
Q ss_pred CCCCeeEEecCCCEEE
Q 001319 630 PNLPRLRFSKEGNLLA 645 (1101)
Q Consensus 630 ~~v~~v~~s~~g~~l~ 645 (1101)
..-....|++||+.++
T Consensus 306 ~~~~~p~~~~dg~~~~ 321 (465)
T d1xfda1 306 RQNEEPVFSKDGRKFF 321 (465)
T ss_dssp CCCCCCEECTTSCSEE
T ss_pred ccCCceeEccCCCeeE
Confidence 0123567899987543
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.94 E-value=9.4e-08 Score=97.53 Aligned_cols=238 Identities=8% Similarity=0.040 Sum_probs=155.6
Q ss_pred CCCCEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceE
Q 001319 803 LEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEV 880 (1101)
Q Consensus 803 ~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~ 880 (1101)
+...-..++++++|.+.++.. .+.+..++............-......+++++ ++.++++....+.+++++-.+...
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~gvav~~-~g~i~v~d~~~~~i~~~~~~~~~~ 90 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTGTTVLPFNGLYQPQGLAVDG-AGTVYVTDFNNRVVTLAAGSNNQT 90 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----CEEECCCCSCCSCCCEEECT-TCCEEEEETTTEEEEECTTCSCCE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCceEEEeccCCccCceEEEEcC-CCCEEEeeeeeceeeeeeecccee
Confidence 444567999999999766654 46777776654433322222234567899999 888887777777777766555554
Q ss_pred EEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-eCCeE
Q 001319 881 KSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-HETQL 959 (1101)
Q Consensus 881 ~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~d~~i 959 (1101)
+....+ .....++++.++++++++-..+..+..++....... .....+ ......+++++++..+++. .++.|
T Consensus 91 ~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~----~~~~~~--~~~p~~i~~~~~g~~~v~~~~~~~i 163 (260)
T d1rwia_ 91 VLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQT----VLPFTG--LNDPDGVAVDNSGNVYVTDTDNNRV 163 (260)
T ss_dssp ECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCE----ECCCCS--CCSCCEEEECTTCCEEEEEGGGTEE
T ss_pred eeeeee-eeecccccccccceeEeeccccccccccccccceee----eeeecc--cCCcceeeecCCCCEeeeccccccc
Confidence 433332 355789999999998887777777777776653321 111111 1456789999999977664 47789
Q ss_pred EEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEE
Q 001319 960 AIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLV 1039 (1101)
Q Consensus 960 ~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~ 1039 (1101)
..++.+........... ......|++.++|+++++....+.|..++........ +. ......+..
T Consensus 164 ~~~d~~~~~~~~~~~~~---~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~-~~-----------~~~~~~P~~ 228 (260)
T d1rwia_ 164 VKLEAESNNQVVLPFTD---ITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTV-LP-----------FTGLNTPLA 228 (260)
T ss_dssp EEECTTTCCEEECCCSS---CCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEE-CC-----------CCSCCCEEE
T ss_pred cccccccceeeeeeccc---cCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEE-Ec-----------cCCCCCeEE
Confidence 99998755433322221 4567899999999988888888889888876543221 11 122235678
Q ss_pred EEEecCCCCEEEEEECCCeEEEEeC
Q 001319 1040 VAAHPLEPNQFAIGLTDGSVKVMEP 1064 (1101)
Q Consensus 1040 l~~~p~d~~~l~s~~~Dg~v~iWd~ 1064 (1101)
+++++ ++.++++-..+++|+..+.
T Consensus 229 i~~d~-~g~l~vad~~~~rI~~i~~ 252 (260)
T d1rwia_ 229 VAVDS-DRTVYVADRGNDRVVKLTS 252 (260)
T ss_dssp EEECT-TCCEEEEEGGGTEEEEECC
T ss_pred EEEeC-CCCEEEEECCCCEEEEEeC
Confidence 99999 5888888777777765554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.94 E-value=5.5e-07 Score=92.78 Aligned_cols=243 Identities=10% Similarity=0.078 Sum_probs=165.1
Q ss_pred cEEEEEEccCCCEEEEEECCCeEEEEeecCCcccccceeee---cccCcEEEEEEecCCCceEEEEecCCceEEEEEcCC
Q 001319 408 SVSRVAWSPDGNYVGVAFTKHLIQLYSYAGSNDLRQHSQID---AHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSG 484 (1101)
Q Consensus 408 ~v~~~~~spdg~~las~~~d~~i~vwd~~~~~~~~~~~~l~---~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~ 484 (1101)
....|+++|+|+.+++-..+..|++||.+ |+.+..+.... +....-..+++.++....+++..+.++.|.+++..|
T Consensus 24 ~P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g 102 (279)
T d1q7fa_ 24 EPSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYG 102 (279)
T ss_dssp CEEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTS
T ss_pred CccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCccccccccccc
Confidence 46899999999988777778899999976 44443221111 122234567777665543444555667888888888
Q ss_pred ceeEEeec-CCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeeec--cCCCCceEEEEEccCCCEEEEeecCCC
Q 001319 485 RKLFNFEG-HEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDY--DAPGHWCTTMLYSADGSRLFSCGTSKD 561 (1101)
Q Consensus 485 ~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~--~~~~~~v~~~~~s~d~~~l~~~~~~~~ 561 (1101)
.....+.. .......+++.+ +|.++++....+.+.+++.+ ++....+ ..+......+++.++++.+++...
T Consensus 103 ~~~~~~~~~~~~~p~~~avd~--~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~--- 176 (279)
T d1q7fa_ 103 QFVRKFGATILQHPRGVTVDN--KGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNR--- 176 (279)
T ss_dssp CEEEEECTTTCSCEEEEEECT--TSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGG---
T ss_pred cceeecCCCcccccceecccc--CCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeecc---
Confidence 88777643 344567777754 66778777777888888754 3333332 334456788999999987777654
Q ss_pred CCceEEEEeCCCCeeEEEeccc-CCcceEEEEEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 562 GDSFLVEWNESEGTIKRTYAGF-RKKSNGVVQFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 562 ~~~~i~iwd~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
.+.|++||.. ++.+.++... .......+++.++|+.+++-. .++.|.+|+. +|+.+..+...........+++.+
T Consensus 177 -~~~V~~~d~~-G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~ 253 (279)
T d1q7fa_ 177 -AHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMD 253 (279)
T ss_dssp -GTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEET
T ss_pred -ccceeeeecC-CceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeC
Confidence 7789999964 5666666422 122466799999998776644 4557999984 677777765444334568899999
Q ss_pred CCCEEEEEEcCCcEEEEEcccc
Q 001319 640 EGNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 640 ~g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+|.+ ++++.++.|++|.....
T Consensus 254 dG~l-~V~~~n~~v~~fr~~~~ 274 (279)
T d1q7fa_ 254 DGSV-VLASKDYRLYIYRYVQL 274 (279)
T ss_dssp TTEE-EEEETTTEEEEEECSCC
T ss_pred CCcE-EEEeCCCeEEEEEeeee
Confidence 9964 55668899999987643
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.93 E-value=2.5e-07 Score=96.84 Aligned_cols=248 Identities=14% Similarity=0.083 Sum_probs=157.1
Q ss_pred CcEEEEEEecCCceEEEEEec-------cCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccC
Q 001319 345 STVISMDFHPSHQTLLLVGSS-------NGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPD 417 (1101)
Q Consensus 345 ~~V~~v~fspdg~~llasg~~-------d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spd 417 (1101)
.....++|.|+|+ ++++... +|+|..||..++....... .......+.-..++|.++
T Consensus 18 ~g~EGpa~d~dG~-ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~---------------~~~~~~~g~P~Gl~~~~d 81 (314)
T d1pjxa_ 18 PGAEGPVFDKNGD-FYIVAPEVEVNGKPAGEILRIDLKTGKKTVICK---------------PEVNGYGGIPAGCQCDRD 81 (314)
T ss_dssp TTCEEEEECTTSC-EEEEETTCEETTEECCEEEEECTTTCCEEEEEC---------------CEETTEECCEEEEEECSS
T ss_pred CCCeEeEEeCCCC-EEEEECccccccccCCEEEEEECCCCcEEEEEC---------------CccccCCCcceeEEEeCC
Confidence 3567789999998 4444221 4678888888775432100 001111234678999999
Q ss_pred CCEEEEEECCCeEEEEeecCCcccccceeeeccc-CcEEEEEEecCCCceEEEEec---------------CCceEEEEE
Q 001319 418 GNYVGVAFTKHLIQLYSYAGSNDLRQHSQIDAHV-GAVNDLAFAYPNKLLCVVTCG---------------DDKLIKVWE 481 (1101)
Q Consensus 418 g~~las~~~d~~i~vwd~~~~~~~~~~~~l~~h~-~~V~~l~~s~d~~~~~l~s~~---------------~d~~v~iwd 481 (1101)
|..|+++...+.|..++.+++..........+.. ...+.+++.++|. +.++-. .+|.|..++
T Consensus 82 g~~l~vad~~~~i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~--lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~ 159 (314)
T d1pjxa_ 82 ANQLFVADMRLGLLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGN--LWITAPAGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp SSEEEEEETTTEEEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSC--EEEEECBCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred CCEEEEEECCCeEEEEeCCCcEEEEEeccccccccCCCcEEEECCCCC--EEEecCccCcccccccceeccCCceEEEEe
Confidence 9988888877789899987654221111111111 1357899999998 555532 133455555
Q ss_pred cCCceeEEeecCCcCeEEEecccCCCc---cEEEEeccCCeEEEEecCCCCeee------eccCC-CCceEEEEEccCCC
Q 001319 482 LSGRKLFNFEGHEAPVYSICPHHKENI---QFIFSTAIDGKIKAWLYDTMGSRV------DYDAP-GHWCTTMLYSADGS 551 (1101)
Q Consensus 482 ~~~~~~~~~~~h~~~v~~v~~~~~~~~---~~l~s~~~d~~i~~wd~~~~~~~~------~~~~~-~~~v~~~~~s~d~~ 551 (1101)
.+|+...... .-..-+.++|+++.++ .+.++-+..+.|..|++....... .+... ......+++..+|+
T Consensus 160 ~dg~~~~~~~-~~~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~Gn 238 (314)
T d1pjxa_ 160 TDGQMIQVDT-AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNN 238 (314)
T ss_dssp TTSCEEEEEE-EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCC
T ss_pred ecCceeEeeC-CcceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCc
Confidence 6665443332 2334567888775543 244555778889988876544321 11111 22457899999999
Q ss_pred EEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEE-EeCCCcEEEEECCC
Q 001319 552 RLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLA-VGEDSQIKFWDMDN 616 (1101)
Q Consensus 552 ~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~~~dg~i~iwd~~~ 616 (1101)
..++.. +.+.|.+||.+.++....+..... ...+++|.|+++.|++ .+.+|.|+..++..
T Consensus 239 lyVa~~----~~g~I~~~dp~~g~~~~~i~~p~~-~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~ 299 (314)
T d1pjxa_ 239 LLVANW----GSSHIEVFGPDGGQPKMRIRCPFE-KPSNLHFKPQTKTIFVTEHENNAVWKFEWQR 299 (314)
T ss_dssp EEEEEE----TTTEEEEECTTCBSCSEEEECSSS-CEEEEEECTTSSEEEEEETTTTEEEEEECSS
T ss_pred EEEEEc----CCCEEEEEeCCCCEEEEEEECCCC-CEEEEEEeCCCCEEEEEECCCCcEEEEECCC
Confidence 877654 378899999998887777665443 6788999999976654 55778888888653
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.91 E-value=1e-07 Score=99.91 Aligned_cols=235 Identities=9% Similarity=0.023 Sum_probs=149.8
Q ss_pred CCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecce--EE
Q 001319 805 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDE--VK 881 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~--~~ 881 (1101)
..+..++++|||+++++.. +++|..|+... +. ..+......+.+++|++ +++++++...++.+..|+..... ..
T Consensus 28 ~~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g-~~-~~~~~~~~~~~gla~~~-dG~l~v~~~~~~~~~~~~~~~~~~~~~ 104 (302)
T d2p4oa1 28 TFLENLASAPDGTIFVTNHEVGEIVSITPDG-NQ-QIHATVEGKVSGLAFTS-NGDLVATGWNADSIPVVSLVKSDGTVE 104 (302)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTC-CE-EEEEECSSEEEEEEECT-TSCEEEEEECTTSCEEEEEECTTSCEE
T ss_pred CCcCCEEECCCCCEEEEeCCCCEEEEEeCCC-CE-EEEEcCCCCcceEEEcC-CCCeEEEecCCceEEEEEeccccccee
Confidence 3578899999999998887 78898888653 32 33444567899999999 88999998888999998876532 21
Q ss_pred Eee-ccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEe--ecCCCC--CCCcceEEEcCCCCEEEEE--
Q 001319 882 SKL-KGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIH--IPAGKT--PTGDTRVQFNADQVRMLVV-- 954 (1101)
Q Consensus 882 ~~~-~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~--~~~~~~--~~~v~~~~~s~d~~~l~~~-- 954 (1101)
... .........+++.++++++++.+.++.+..++..++.......-. ...... ......+.++ +..+..+
T Consensus 105 ~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~ 182 (302)
T d2p4oa1 105 TLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT 182 (302)
T ss_dssp EEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET
T ss_pred eccccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC
Confidence 111 224456889999999999999888998988888875422111100 000001 0223344444 4555553
Q ss_pred eCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccCCCCc
Q 001319 955 HETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQT 1034 (1101)
Q Consensus 955 ~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~ 1034 (1101)
..+.|..++.............. .......++|++||+++++...++.|..++... +....... ....
T Consensus 183 ~~~~i~~~~~~~~~~~~~~~~~~-~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G-~~~~~~~~----------~~~~ 250 (302)
T d2p4oa1 183 EKMLLLRIPVDSTDKPGEPEIFV-EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR-STTIIAQA----------EQGV 250 (302)
T ss_dssp TTTEEEEEEBCTTSCBCCCEEEE-ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC-CEEEEECG----------GGTC
T ss_pred CCCeEEecccccccccccccccc-CCCCCcceEECCCCCEEEEEcCCCcEEEECCCC-CEEEEEec----------CCCC
Confidence 47788888876543322111100 033456799999999888888899999998764 33222221 0112
Q ss_pred cceEEEEEecC--CCCEEEEEECC
Q 001319 1035 VYPLVVAAHPL--EPNQFAIGLTD 1056 (1101)
Q Consensus 1035 ~~~~~l~~~p~--d~~~l~s~~~D 1056 (1101)
..+++++|.+. |++.|..++..
T Consensus 251 ~~pt~vafg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 251 IGSTAVAFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp TTEEEEEECCSTTTTTEEEEEECT
T ss_pred CCceEEEEcCCCCCCCEEEEECCC
Confidence 34678999431 56666555443
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.89 E-value=9.5e-07 Score=90.91 Aligned_cols=197 Identities=11% Similarity=0.117 Sum_probs=131.4
Q ss_pred cEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeecC------CcCeEEEecccCCCccEEEEeccCCeEEEEecC
Q 001319 453 AVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEGH------EAPVYSICPHHKENIQFIFSTAIDGKIKAWLYD 526 (1101)
Q Consensus 453 ~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~h------~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~ 526 (1101)
.-..++++++|+ ++++-...+.|++||.+|+.+..+... ......+++.......+++..+.++.|..++..
T Consensus 24 ~P~gvavd~dg~--i~VaD~~n~rI~v~d~~G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 101 (279)
T d1q7fa_ 24 EPSGVAVNAQND--IIVADTNNHRIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY 101 (279)
T ss_dssp CEEEEEECTTCC--EEEEEGGGTEEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT
T ss_pred CccEEEEcCCCC--EEEEECCCCEEEEEeCCCCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccc
Confidence 357899999998 777777788999999889888776321 112344554433332333344556678777653
Q ss_pred CCCeeeecc-CCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccC-CcceEEEEEeCCCCEEEEEe
Q 001319 527 TMGSRVDYD-APGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFR-KKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 527 ~~~~~~~~~-~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~~ 604 (1101)
+.....+. ........+++.++|+.+++... ...+.+++.. ++.+..+.... ......+++.++++.+++..
T Consensus 102 -g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~----~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~ 175 (279)
T d1q7fa_ 102 -GQFVRKFGATILQHPRGVTVDNKGRIIVVECK----VMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDN 175 (279)
T ss_dssp -SCEEEEECTTTCSCEEEEEECTTSCEEEEETT----TTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEG
T ss_pred -ccceeecCCCcccccceeccccCCcEEEEeec----cceeeEeccC-CceeecccccccccccceeeeccceeEEeeec
Confidence 33333332 23346788999999998877553 6678888754 55666653322 23466788999998888888
Q ss_pred CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEc-CCcEEEEEc
Q 001319 605 EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTA-DNGFKILAN 658 (1101)
Q Consensus 605 ~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~-d~~i~iwd~ 658 (1101)
..+.|++||. +++.+..+...+.......+++.++|+.+++-.. ++.|.+++.
T Consensus 176 ~~~~V~~~d~-~G~~~~~~g~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~ 229 (279)
T d1q7fa_ 176 RAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ 229 (279)
T ss_dssp GGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT
T ss_pred cccceeeeec-CCceeeeecccccccCCcccccccCCeEEEEECCCCcEEEEECC
Confidence 8899999997 4666666654444445678999999987766443 345777764
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.87 E-value=5.4e-07 Score=94.27 Aligned_cols=240 Identities=14% Similarity=0.134 Sum_probs=153.5
Q ss_pred EeEEEecCCCCeEEEEc--------CCeEEEEECCCceEEEEeeCC----CCCeeEEEEecCCCCEEEEEeCCCcEEEEE
Q 001319 807 VPCIALSKNDSYVMSAT--------GGKISLFNMMTFKVMTTFMSP----PPASTFLAFHPQDNNIIAIGTEDSTIHIYN 874 (1101)
Q Consensus 807 v~~~~~s~dg~~la~~~--------dg~i~vwd~~~~~~~~~~~~~----~~~i~~l~~s~~~~~~la~g~~dg~v~iwd 874 (1101)
...++|.+||++.++.. +|+|..||..++......... ......++|.+ ++..|+++...+.|..++
T Consensus 20 ~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~-dg~~l~vad~~~~i~~~~ 98 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDR-DANQLFVADMRLGLLVVQ 98 (314)
T ss_dssp CEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECS-SSSEEEEEETTTEEEEEE
T ss_pred CeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeC-CCCEEEEEECCCeEEEEe
Confidence 45689999999887643 367999999887664443221 12356799999 788777777777788888
Q ss_pred eecceEEEeeccCCC----CeeEEEEcCCCCEEEEEeC---------------CCcEEEEECCCCccccceEEeecCCCC
Q 001319 875 VRVDEVKSKLKGHQK----RITGLAFSTSLNILVSSGA---------------DAQLCVWSIDTWEKRKSVTIHIPAGKT 935 (1101)
Q Consensus 875 ~~~~~~~~~~~~h~~----~V~~l~~s~d~~~l~s~s~---------------Dg~v~lwd~~~~~~~~~~~~~~~~~~~ 935 (1101)
...+..........+ ..+.+++.++|++.++-.. +|.|..++.+. +... .....
T Consensus 99 ~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg-~~~~-~~~~~----- 171 (314)
T d1pjxa_ 99 TDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDG-QMIQ-VDTAF----- 171 (314)
T ss_dssp TTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTS-CEEE-EEEEE-----
T ss_pred CCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecC-ceeE-eeCCc-----
Confidence 765543222111111 3678999999998887432 23344444322 2111 11110
Q ss_pred CCCcceEEEcCCCC----EEEEEe--CCeEEEEEcCCceeeeE---ec-cCCCCCCCEEEEEEccCCCEEEEEeCCCcEE
Q 001319 936 PTGDTRVQFNADQV----RMLVVH--ETQLAIYDASKMERIRQ---WT-PQDALSAPISCAVYSCNSQLVFATFCDGNIG 1005 (1101)
Q Consensus 936 ~~~v~~~~~s~d~~----~l~~~~--d~~i~v~d~~~~~~~~~---~~-~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~ 1005 (1101)
.....++|+|++. .|.+++ .+.|..|++.....+.. +. ....+......+++..+|++.++....+.|.
T Consensus 172 -~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~ 250 (314)
T d1pjxa_ 172 -QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIE 250 (314)
T ss_dssp -SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEE
T ss_pred -ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEE
Confidence 3346789998765 455543 67888888754322211 11 1111133467899999999888888889999
Q ss_pred EEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCC-EEEEEECCCeEEEEeCCCCC
Q 001319 1006 VFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPN-QFAIGLTDGSVKVMEPSESE 1068 (1101)
Q Consensus 1006 vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~-~l~s~~~Dg~v~iWd~~~~~ 1068 (1101)
+||.+++.....+.. ....+++++|.| |++ +++|.+.+|+|...++....
T Consensus 251 ~~dp~~g~~~~~i~~------------p~~~~t~~afg~-d~~~lyVt~~~~g~i~~~~~~~~G 301 (314)
T d1pjxa_ 251 VFGPDGGQPKMRIRC------------PFEKPSNLHFKP-QTKTIFVTEHENNAVWKFEWQRNG 301 (314)
T ss_dssp EECTTCBSCSEEEEC------------SSSCEEEEEECT-TSSEEEEEETTTTEEEEEECSSCB
T ss_pred EEeCCCCEEEEEEEC------------CCCCEEEEEEeC-CCCEEEEEECCCCcEEEEECCCCC
Confidence 999998887666542 112467899999 554 77888888988888875433
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.83 E-value=2.5e-06 Score=89.41 Aligned_cols=235 Identities=13% Similarity=0.082 Sum_probs=149.4
Q ss_pred CCEeEEEecCCCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCC----CcEEEEEeecce
Q 001319 805 EAVPCIALSKNDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTED----STIHIYNVRVDE 879 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~d----g~v~iwd~~~~~ 879 (1101)
..+..++|.++|++.++-. +++|..|+..+.+....+.........+++++ +++++++...+ +.+...+..++.
T Consensus 40 ~~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~-dG~l~va~~~~~~~~~~i~~~~~~~~~ 118 (319)
T d2dg1a1 40 LQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHK-DGRLFVCYLGDFKSTGGIFAATENGDN 118 (319)
T ss_dssp CCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECT-TSCEEEEECTTSSSCCEEEEECTTSCS
T ss_pred cCcEeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECC-CCCEEEEecCCCccceeEEEEcCCCce
Confidence 3457899999999666654 78999999988777666665666788999999 88888765432 234444444443
Q ss_pred EEEeecc--CCCCeeEEEEcCCCCEEEEEeCC------CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEE
Q 001319 880 VKSKLKG--HQKRITGLAFSTSLNILVSSGAD------AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRM 951 (1101)
Q Consensus 880 ~~~~~~~--h~~~V~~l~~s~d~~~l~s~s~D------g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l 951 (1101)
....... -......+++.++|++.++.... +.+..++.+.+.... ..-.. .....++|+||++.|
T Consensus 119 ~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~-~~~~~------~~pnGia~s~dg~~l 191 (319)
T d2dg1a1 119 LQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTP-IIQNI------SVANGIALSTDEKVL 191 (319)
T ss_dssp CEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEE-EEEEE------SSEEEEEECTTSSEE
T ss_pred eeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEE-Eeecc------ceeeeeeeccccceE
Confidence 3332221 12357889999999877764321 234445544432211 11111 345679999999987
Q ss_pred EEEe--CCeEEEEEcCCc-eeeeE----eccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcC
Q 001319 952 LVVH--ETQLAIYDASKM-ERIRQ----WTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYL 1024 (1101)
Q Consensus 952 ~~~~--d~~i~v~d~~~~-~~~~~----~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 1024 (1101)
.+++ .+.|..|+++.. ..... .............+++..+|++.++....+.|.+||- .|+.+..+......
T Consensus 192 yvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~ 270 (319)
T d2dg1a1 192 WVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD 270 (319)
T ss_dssp EEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred EEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC
Confidence 7754 789999987632 11111 1100111234678999999998888888999999995 78888887642211
Q ss_pred CCcccCCCCccceEEEEEecCCCCEEEEEEC
Q 001319 1025 SPSVLNGSQTVYPLVVAAHPLEPNQFAIGLT 1055 (1101)
Q Consensus 1025 ~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~~ 1055 (1101)
..+...+++++|.+. ...+++...
T Consensus 271 ------~~~~~~~~~~~~~~~-~~~~~~t~~ 294 (319)
T d2dg1a1 271 ------EGHMLRSTHPQFIPG-TNQLIICSN 294 (319)
T ss_dssp ------GTCSCBCCEEEECTT-SCEEEEEEE
T ss_pred ------CCcCceeeeEEEeCC-CCEEEEEcC
Confidence 122334568999984 555554443
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.71 E-value=6.4e-06 Score=86.21 Aligned_cols=232 Identities=12% Similarity=0.032 Sum_probs=149.4
Q ss_pred CCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEE
Q 001319 344 GSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGV 423 (1101)
Q Consensus 344 ~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las 423 (1101)
.-.+..++|.++|+ |.++-...+.|..|+.++++... ...........++|++||+++++
T Consensus 39 ~~~lEG~~~D~~G~-Ly~~D~~~g~I~ri~p~g~~~~~-------------------~~~~~~~~p~gla~~~dG~l~va 98 (319)
T d2dg1a1 39 GLQLEGLNFDRQGQ-LFLLDVFEGNIFKINPETKEIKR-------------------PFVSHKANPAAIKIHKDGRLFVC 98 (319)
T ss_dssp CCCEEEEEECTTSC-EEEEETTTCEEEEECTTTCCEEE-------------------EEECSSSSEEEEEECTTSCEEEE
T ss_pred CcCcEeCEECCCCC-EEEEECCCCEEEEEECCCCeEEE-------------------EEeCCCCCeeEEEECCCCCEEEE
Confidence 34567999999998 76777778899999887765432 12234456789999999998877
Q ss_pred EECC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecC------CceEEEEEcCCceeEEeecC
Q 001319 424 AFTK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGH 493 (1101)
Q Consensus 424 ~~~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~h 493 (1101)
...+ +.|...+..++...... .-..-....+.+++.++|+ +.++... .+.+..++.+++.+..+...
T Consensus 99 ~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~nd~~~d~~G~--l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~ 175 (319)
T d2dg1a1 99 YLGDFKSTGGIFAATENGDNLQDII-EDLSTAYCIDDMVFDSKGG--FYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN 175 (319)
T ss_dssp ECTTSSSCCEEEEECTTSCSCEEEE-CSSSSCCCEEEEEECTTSC--EEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE
T ss_pred ecCCCccceeEEEEcCCCceeeeec-cCCCcccCCcceeEEeccc--eeecccccccccCcceeEEEecccceeEEEeec
Confidence 5432 33445555554332211 1011133578899999998 5555322 23455566666655554433
Q ss_pred CcCeEEEecccCCCccE-EEEeccCCeEEEEecCCCCeee--------eccCCCCceEEEEEccCCCEEEEeecCCCCCc
Q 001319 494 EAPVYSICPHHKENIQF-IFSTAIDGKIKAWLYDTMGSRV--------DYDAPGHWCTTMLYSADGSRLFSCGTSKDGDS 564 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~-l~s~~~d~~i~~wd~~~~~~~~--------~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~ 564 (1101)
-...+.++|++ +++. .++-+..+.|..|+++...... ...........+++.++|++.++.. +.+
T Consensus 176 ~~~pnGia~s~--dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~----~~g 249 (319)
T d2dg1a1 176 ISVANGIALST--DEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMY----GQG 249 (319)
T ss_dssp ESSEEEEEECT--TSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEE----TTT
T ss_pred cceeeeeeecc--ccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEc----CCC
Confidence 44567899977 4454 4666778899999886543211 1111223467899999999777665 378
Q ss_pred eEEEEeCCCCeeEEEecccC-----CcceEEEEEeCCCCEEEEEeC
Q 001319 565 FLVEWNESEGTIKRTYAGFR-----KKSNGVVQFDTTQNHFLAVGE 605 (1101)
Q Consensus 565 ~i~iwd~~~~~~~~~~~~~~-----~~~v~~~~~~~~~~~l~~~~~ 605 (1101)
.|.++|. .|+.+..+.... ...+.+++|.+++..+++...
T Consensus 250 ~V~~~~p-~G~~l~~i~~P~~~~~~~~~~~~~~~~~~~~~~~~t~~ 294 (319)
T d2dg1a1 250 RVLVFNK-RGYPIGQILIPGRDEGHMLRSTHPQFIPGTNQLIICSN 294 (319)
T ss_dssp EEEEECT-TSCEEEEEECTTGGGTCSCBCCEEEECTTSCEEEEEEE
T ss_pred EEEEECC-CCcEEEEEeCCCcCCCcCceeeeEEEeCCCCEEEEEcC
Confidence 9999996 688877775432 124678899998877777553
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.58 E-value=3.7e-06 Score=86.55 Aligned_cols=236 Identities=10% Similarity=0.064 Sum_probs=129.6
Q ss_pred EEecC--CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEEC-C
Q 001319 351 DFHPS--HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFT-K 427 (1101)
Q Consensus 351 ~fspd--g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~-d 427 (1101)
..||| |++++.+ .++.|.+.|+.+++... +..+.+.+...+|||||++||.... +
T Consensus 5 ~~sPdi~G~~v~f~--~~~dl~~~d~~~g~~~~--------------------Lt~~~~~~~~p~~SPDG~~iaf~~~~~ 62 (281)
T d1k32a2 5 LLNPDIHGDRIIFV--CCDDLWEHDLKSGSTRK--------------------IVSNLGVINNARFFPDGRKIAIRVMRG 62 (281)
T ss_dssp CEEEEEETTEEEEE--ETTEEEEEETTTCCEEE--------------------EECSSSEEEEEEECTTSSEEEEEEEES
T ss_pred ccCCCCCCCEEEEE--eCCcEEEEECCCCCEEE--------------------EecCCCcccCEEECCCCCEEEEEEeeC
Confidence 35899 9977555 45678888998876543 5567778999999999999997642 2
Q ss_pred -----CeEEEEeecCCcccccce---eeecccCcEEEEEEecCCCceEEEEecC------CceEEEEEcCCceeEEeecC
Q 001319 428 -----HLIQLYSYAGSNDLRQHS---QIDAHVGAVNDLAFAYPNKLLCVVTCGD------DKLIKVWELSGRKLFNFEGH 493 (1101)
Q Consensus 428 -----~~i~vwd~~~~~~~~~~~---~l~~h~~~V~~l~~s~d~~~~~l~s~~~------d~~v~iwd~~~~~~~~~~~h 493 (1101)
..|.+++..+++..+... ............+|+|||+. ++.... ...+...+..+.......
T Consensus 63 ~~~~~~~i~~~~~~~g~~~~lt~~~~~~~~~~~~~~~~~~spdg~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 138 (281)
T d1k32a2 63 SSLNTADLYFYNGENGEIKRITYFSGKSTGRRMFTDVAGFDPDGNL--IISTDAMQPFSSMTCLYRVENDGINFVPLN-- 138 (281)
T ss_dssp TTCCEEEEEEEETTTTEEEECCCCCEEEETTEECSEEEEECTTCCE--EEEECTTSSSTTCCEEEEEEGGGTEEEECC--
T ss_pred CCCCceEEEEEEecCCceEEeeecCCCccCccccccccccCCCCCE--EEEEEccCCCccceeeeeecCCCceeEEec--
Confidence 247777887776543110 01122235678899999994 443221 123445554444433322
Q ss_pred CcCeEEEecccCCCccEEEEeccCC-----------eEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCC
Q 001319 494 EAPVYSICPHHKENIQFIFSTAIDG-----------KIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDG 562 (1101)
Q Consensus 494 ~~~v~~v~~~~~~~~~~l~s~~~d~-----------~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~ 562 (1101)
........+ +. ++..++....+. ....+....... ..............++++. ++... ..++
T Consensus 139 ~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~-~~~~ 212 (281)
T d1k32a2 139 LGPATHILF-AD-GRRVIGRNTFELPHWKGYRGGTRGKIWIEVNSGAF-KKIVDMSTHVSSPVIVGHR--IYFIT-DIDG 212 (281)
T ss_dssp SCSCSEEEE-ET-TEEEEEESCSCCTTSTTCCSTTCCEEEEEEETTEE-EEEECCSSCCEEEEEETTE--EEEEE-CTTS
T ss_pred CCccceeee-cC-CCeEEEeeccccceeeeeccCCcceeeeeccccce-eeccCCccccceeeeeccc--cceec-cccc
Confidence 222222222 11 223333322211 111111111111 1222222334445555543 33332 2345
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEe
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTS 622 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 622 (1101)
...|.++|+.+++..+... ... .....|+|||+.|+.. .++.|+++|+.+++....
T Consensus 213 ~~~l~~~d~~g~~~~~lt~-~~~--~~~~~~SpDG~~I~f~-~~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 213 FGQIYSTDLDGKDLRKHTS-FTD--YYPRHLNTDGRRILFS-KGGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp SCEEEEEETTSCSCEECCC-CCS--SCEEEEEESSSCEEEE-ETTEEEEECTTTCCEEEC
T ss_pred ccceEEEeCCCCceEEeec-CCC--cccccCcCCCCEEEEE-eCCEEEEEECCCCCEEEe
Confidence 6678999988776554322 222 2335689999998764 468899999988875543
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.45 E-value=0.00011 Score=75.38 Aligned_cols=223 Identities=8% Similarity=0.052 Sum_probs=146.0
Q ss_pred eEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 808 PCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 808 ~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.+..|++....|...+ .++|..||..+++.. .+. ....+.++++.+ ++.++++ +.+ .+.++|..+++......
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~-~~~-~~~~~~~i~~~~-dg~l~va-~~~-gl~~~d~~tg~~~~l~~ 95 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKT-VHA-LPFMGSALAKIS-DSKQLIA-SDD-GLFLRDTATGVLTLHAE 95 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEE-EEE-CSSCEEEEEEEE-TTEEEEE-ETT-EEEEEETTTCCEEEEEC
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEE-EEE-CCCCcEEEEEec-CCCEEEE-EeC-ccEEeecccceeeEEee
Confidence 3566776555454444 688999999988654 232 245788999998 7777754 454 59999999887543322
Q ss_pred --c--CCCCeeEEEEcCCCCEEEEEeCC----CcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--
Q 001319 886 --G--HQKRITGLAFSTSLNILVSSGAD----AQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-- 955 (1101)
Q Consensus 886 --~--h~~~V~~l~~s~d~~~l~s~s~D----g~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-- 955 (1101)
. ....++.+.+.|+|++.++...+ +.-.+|.+..++...... .. .....++|+++++.+..++
T Consensus 96 ~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~------~~~Ng~~~s~d~~~l~~~dt~ 168 (295)
T d2ghsa1 96 LESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DI------SIPNSICFSPDGTTGYFVDTK 168 (295)
T ss_dssp SSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEE-EE------SSEEEEEECTTSCEEEEEETT
T ss_pred eecCCCcccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEee-cc------CCcceeeecCCCceEEEeecc
Confidence 1 12358899999999977765432 345667766654322221 11 4557899999999887765
Q ss_pred CCeEEEEEcCCce--e---eeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCCCCcCCCcccC
Q 001319 956 ETQLAIYDASKME--R---IRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAPSTYLSPSVLN 1030 (1101)
Q Consensus 956 d~~i~v~d~~~~~--~---~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 1030 (1101)
.+.|..|+++... . ...+............+++..+|.+.++.-..+.|..|| ..|+.+..+...
T Consensus 169 ~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~d-p~G~~~~~i~lP--------- 238 (295)
T d2ghsa1 169 VNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYD-TDGNHIARYEVP--------- 238 (295)
T ss_dssp TCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEEC-TTCCEEEEEECS---------
T ss_pred cceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEec-CCCcEeeEecCC---------
Confidence 6788888875211 1 111111111255688999999999888877888999999 568888887631
Q ss_pred CCCccceEEEEEecCC-CCEEEEEEC
Q 001319 1031 GSQTVYPLVVAAHPLE-PNQFAIGLT 1055 (1101)
Q Consensus 1031 h~~~~~~~~l~~~p~d-~~~l~s~~~ 1055 (1101)
. -.+++++|--.| ..+++|+..
T Consensus 239 -~--~~~T~~~FGG~d~~~LyvTta~ 261 (295)
T d2ghsa1 239 -G--KQTTCPAFIGPDASRLLVTSAR 261 (295)
T ss_dssp -C--SBEEEEEEESTTSCEEEEEEBC
T ss_pred -C--CceEEEEEeCCCCCEEEEEECC
Confidence 1 256889996434 445565554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=98.32 E-value=2.4e-05 Score=80.15 Aligned_cols=230 Identities=12% Similarity=0.094 Sum_probs=124.8
Q ss_pred eeecCCCccccccCCCCcceeEeecCCCcEEEEEEecCCceEEEEEeccC-----cEEEEecCCCceeccccceeecccc
Q 001319 318 VTYSSSRHQTWSLDDLPRTVAVSLHQGSTVISMDFHPSHQTLLLVGSSNG-----EITLWELAMRDRLVSKPFKIWDMAA 392 (1101)
Q Consensus 318 v~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~fspdg~~llasg~~d~-----~i~iwd~~~~~~~~~~~~~~~d~~~ 392 (1101)
|.|...++ +|..+.......++..+.+.+...+|||||++|+.+...++ .|.+++..+++...-..
T Consensus 15 v~f~~~~d-l~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt~-------- 85 (281)
T d1k32a2 15 IIFVCCDD-LWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRITY-------- 85 (281)
T ss_dssp EEEEETTE-EEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECCC--------
T ss_pred EEEEeCCc-EEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEeee--------
Confidence 45554332 78777666667777778889999999999998765554332 47777777776543100
Q ss_pred cCccccccccccCCccEEEEEEccCCCEEEEEECC------CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCce
Q 001319 393 CSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK------HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLL 466 (1101)
Q Consensus 393 ~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d------~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~ 466 (1101)
...............+|+|||+.|+..... ..+...+..++.... .+...... .+.+++..
T Consensus 86 -----~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~-~~~~~~~~- 152 (281)
T d1k32a2 86 -----FSGKSTGRRMFTDVAGFDPDGNLIISTDAMQPFSSMTCLYRVENDGINFVP------LNLGPATH-ILFADGRR- 152 (281)
T ss_dssp -----CCEEEETTEECSEEEEECTTCCEEEEECTTSSSTTCCEEEEEEGGGTEEEE------CCSCSCSE-EEEETTEE-
T ss_pred -----cCCCccCccccccccccCCCCCEEEEEEccCCCccceeeeeecCCCceeEE------ecCCccce-eeecCCCe-
Confidence 000011223456788999999999876432 234555555543211 22333333 34455553
Q ss_pred EEEEecCCc-----------eEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccC--CeEEEEecCCCCeeee
Q 001319 467 CVVTCGDDK-----------LIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAID--GKIKAWLYDTMGSRVD 533 (1101)
Q Consensus 467 ~l~s~~~d~-----------~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d--~~i~~wd~~~~~~~~~ 533 (1101)
.++....+. ...++............+........+.+ + ..+.....+ ..|.++|+++......
T Consensus 153 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~l~~~d~~g~~~~~l 229 (281)
T d1k32a2 153 VIGRNTFELPHWKGYRGGTRGKIWIEVNSGAFKKIVDMSTHVSSPVIVG--H-RIYFITDIDGFGQIYSTDLDGKDLRKH 229 (281)
T ss_dssp EEEESCSCCTTSTTCCSTTCCEEEEEEETTEEEEEECCSSCCEEEEEET--T-EEEEEECTTSSCEEEEEETTSCSCEEC
T ss_pred EEEeeccccceeeeeccCCcceeeeeccccceeeccCCccccceeeeec--c-ccceecccccccceEEEeCCCCceEEe
Confidence 333332221 11222222222222222333333333332 2 233333333 3566677776655443
Q ss_pred ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE
Q 001319 534 YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT 579 (1101)
Q Consensus 534 ~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~ 579 (1101)
....... ...|+|||+.|+... ++.|+++|+.+++..+.
T Consensus 230 t~~~~~~--~~~~SpDG~~I~f~~-----~~~l~~~d~~~g~~~~i 268 (281)
T d1k32a2 230 TSFTDYY--PRHLNTDGRRILFSK-----GGSIYIFNPDTEKIEKI 268 (281)
T ss_dssp CCCCSSC--EEEEEESSSCEEEEE-----TTEEEEECTTTCCEEEC
T ss_pred ecCCCcc--cccCcCCCCEEEEEe-----CCEEEEEECCCCCEEEe
Confidence 3322223 346899999988754 56799999998876544
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.26 E-value=0.00029 Score=72.07 Aligned_cols=223 Identities=14% Similarity=0.070 Sum_probs=144.5
Q ss_pred EEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECC
Q 001319 348 ISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTK 427 (1101)
Q Consensus 348 ~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d 427 (1101)
.+..|++....|+.+--..+.|.-||..+++... + .....+.++++.++|.++++ +.+
T Consensus 21 Egp~wd~~~~~l~wvDi~~~~I~r~d~~~g~~~~--------------------~-~~~~~~~~i~~~~dg~l~va-~~~ 78 (295)
T d2ghsa1 21 EGPTFDPASGTAWWFNILERELHELHLASGRKTV--------------------H-ALPFMGSALAKISDSKQLIA-SDD 78 (295)
T ss_dssp EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE--------------------E-ECSSCEEEEEEEETTEEEEE-ETT
T ss_pred eCCeEECCCCEEEEEECCCCEEEEEECCCCeEEE--------------------E-ECCCCcEEEEEecCCCEEEE-EeC
Confidence 4566887555566665567889999988875432 1 12346889999999987765 455
Q ss_pred CeEEEEeecCCcccccceeeec--ccCcEEEEEEecCCCceEEEEecC----CceEEEEE-cCCceeEEeecCCcCeEEE
Q 001319 428 HLIQLYSYAGSNDLRQHSQIDA--HVGAVNDLAFAYPNKLLCVVTCGD----DKLIKVWE-LSGRKLFNFEGHEAPVYSI 500 (1101)
Q Consensus 428 ~~i~vwd~~~~~~~~~~~~l~~--h~~~V~~l~~s~d~~~~~l~s~~~----d~~v~iwd-~~~~~~~~~~~h~~~v~~v 500 (1101)
.|.++|..+++... +..... ....++++.+.|+|+ +.++... .+.-.+|. ..++....+. .-...+.+
T Consensus 79 -gl~~~d~~tg~~~~-l~~~~~~~~~~~~nd~~vd~~G~--iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~-~~~~~Ng~ 153 (295)
T d2ghsa1 79 -GLFLRDTATGVLTL-HAELESDLPGNRSNDGRMHPSGA--LWIGTMGRKAETGAGSIYHVAKGKVTKLFA-DISIPNSI 153 (295)
T ss_dssp -EEEEEETTTCCEEE-EECSSTTCTTEEEEEEEECTTSC--EEEEEEETTCCTTCEEEEEEETTEEEEEEE-EESSEEEE
T ss_pred -ccEEeecccceeeE-EeeeecCCCcccceeeEECCCCC--EEEEeccccccccceeEeeecCCcEEEEee-ccCCccee
Confidence 49999999886432 111111 123688999999998 4443321 22445666 5555443333 23346788
Q ss_pred ecccCCCccEEEEeccCCeEEEEecCCCCe------e--eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCC
Q 001319 501 CPHHKENIQFIFSTAIDGKIKAWLYDTMGS------R--VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNES 572 (1101)
Q Consensus 501 ~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~------~--~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~ 572 (1101)
+|+++.+ .++++-+..+.|..++++.... . ............+++..+|++.++.-. .+.|..||.
T Consensus 154 ~~s~d~~-~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~----~g~V~~~dp- 227 (295)
T d2ghsa1 154 CFSPDGT-TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWG----EGAVDRYDT- 227 (295)
T ss_dssp EECTTSC-EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEET----TTEEEEECT-
T ss_pred eecCCCc-eEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEeeeeC----CCceEEecC-
Confidence 8877432 3556667788999998754321 1 122334456789999999987776543 678999995
Q ss_pred CCeeEEEecccCCcceEEEEEe-CCCCEEEEEe
Q 001319 573 EGTIKRTYAGFRKKSNGVVQFD-TTQNHFLAVG 604 (1101)
Q Consensus 573 ~~~~~~~~~~~~~~~v~~~~~~-~~~~~l~~~~ 604 (1101)
.|+.+..+..... .+++++|. ++.+.|++.+
T Consensus 228 ~G~~~~~i~lP~~-~~T~~~FGG~d~~~LyvTt 259 (295)
T d2ghsa1 228 DGNHIARYEVPGK-QTTCPAFIGPDASRLLVTS 259 (295)
T ss_dssp TCCEEEEEECSCS-BEEEEEEESTTSCEEEEEE
T ss_pred CCcEeeEecCCCC-ceEEEEEeCCCCCEEEEEE
Confidence 6888888876544 67888996 6767776644
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.98 E-value=0.0068 Score=62.15 Aligned_cols=102 Identities=17% Similarity=0.113 Sum_probs=75.3
Q ss_pred EEEEcc---CCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEe--CCCCEEEEEeCC-----------
Q 001319 543 TMLYSA---DGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFD--TTQNHFLAVGED----------- 606 (1101)
Q Consensus 543 ~~~~s~---d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~~~d----------- 606 (1101)
.+++.. ||+++++... .+.+|.+.|+++.+..+.........+..++.. |+-.+++..+++
T Consensus 89 ~~S~TdGtyDGrylFVNDk---an~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l 165 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDK---ANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNM 165 (459)
T ss_dssp EEEEETTEEEEEEEEEEET---TTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSST
T ss_pred cccccCCccceeEEEEEcC---CCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccc
Confidence 556654 8999998764 588999999999998776655444455655554 455677776653
Q ss_pred -------CcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC
Q 001319 607 -------SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD 650 (1101)
Q Consensus 607 -------g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d 650 (1101)
+.+.++|..+.+....+...+. ...++++++|+++++.+.+
T Consensus 166 ~d~~~y~~~~t~ID~~tm~V~~QV~V~g~---ld~~~~s~dGK~af~TsyN 213 (459)
T d1fwxa2 166 EDVANYVNVFTAVDADKWEVAWQVLVSGN---LDNCDADYEGKWAFSTSYN 213 (459)
T ss_dssp TCGG-EEEEEEEEETTTTEEEEEEEESSC---CCCEEECSSSSEEEEEESC
T ss_pred cchhhcceEEEEEecCCceEEEEeeeCCC---hhccccCCCCCEEEEEecc
Confidence 2367889999998888776543 5789999999999988754
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=0.013 Score=57.95 Aligned_cols=255 Identities=12% Similarity=0.044 Sum_probs=156.0
Q ss_pred CceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-CCCeEEEEe
Q 001319 356 HQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYS 434 (1101)
Q Consensus 356 g~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd 434 (1101)
|.+||.+ ..+.|+-.+++........ ....+..+...+.+++|.+..+.|.... .++.|+..+
T Consensus 1 ~~fLl~s--~~~~I~~~~ld~~~~~~~~--------------~~~~~~~~~~~~~~ld~D~~~~~iywsd~~~~~I~~~~ 64 (263)
T d1npea_ 1 GTHLLFA--QTGKIERLPLERNTMKKTE--------------AKAFLHIPAKVIIGLAFDCVDKVVYWTDISEPSIGRAS 64 (263)
T ss_dssp CEEEEEE--EEEEEEEEEESSSCBCGGG--------------CEEEEEEEEEEEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCEEEEe--CCCeEEEEECCCccccccc--------------cccccccCCCcEEEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 3455554 3457877777654432110 1112334455688999999888777764 467788888
Q ss_pred ecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeec-CCcCeEEEecccCCCccEEEE
Q 001319 435 YAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPVYSICPHHKENIQFIFS 513 (1101)
Q Consensus 435 ~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-h~~~v~~v~~~~~~~~~~l~s 513 (1101)
+.++.... .+......+.++++..-++. +.++-...+.|.+.+.+|.....+.. .......+++.|.. |.+..+
T Consensus 65 l~g~~~~~---v~~~~~~~p~~iAvD~~~~~-lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~-g~ly~t 139 (263)
T d1npea_ 65 LHGGEPTT---IIRQDLGSPEGIALDHLGRT-IFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVR-GNLYWT 139 (263)
T ss_dssp SSSCCCEE---EECTTCCCEEEEEEETTTTE-EEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTT-TEEEEE
T ss_pred cccCCcEE---EEEeccccccEEEEeccCCe-EEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEeccc-CcEEEe
Confidence 87655332 23233356889999876664 44566667899999966665444433 33567888887653 333334
Q ss_pred eccCCe--EEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEE
Q 001319 514 TAIDGK--IKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVV 591 (1101)
Q Consensus 514 ~~~d~~--i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~ 591 (1101)
-...+. |..-+++...........-....++++.+.++.|..+-. +.+.|...++........+.+... ...+
T Consensus 140 ~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~---~~~~I~~~~~~g~~~~~v~~~~~~--P~~l 214 (263)
T d1npea_ 140 DWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDA---GTHRAECLNPAQPGRRKVLEGLQY--PFAV 214 (263)
T ss_dssp ECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTEEEEEEEEECCCS--EEEE
T ss_pred ecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeC---CCCEEEEEECCCCCeEEEECCCCC--cEEE
Confidence 322233 443455544433333334456789999988888876643 467899999876655545554332 3456
Q ss_pred EEeCCCCEEEEEe-CCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEec
Q 001319 592 QFDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSK 639 (1101)
Q Consensus 592 ~~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~ 639 (1101)
++. +++|+... ..+.|...|..+++....+..... .....+++.+
T Consensus 215 av~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~-~~~~gi~v~~ 260 (263)
T d1npea_ 215 TSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFHPHKQ-TRLYGITIAL 260 (263)
T ss_dssp EEE--TTEEEEEETTTTEEEEEETTTTEEEEEECCSSC-CCCCCEEEEC
T ss_pred EEE--CCEEEEEECCCCEEEEEECCCCccceEECCCCC-CCcceEEEeC
Confidence 665 45666554 678899999998888776643332 2445665544
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.77 E-value=0.0053 Score=68.60 Aligned_cols=149 Identities=11% Similarity=0.037 Sum_probs=94.2
Q ss_pred CcEEEEEeecceEEEeeccCCCCeeE---------EEEcCCC---CEEEEEeCCCcEEEEECCCCccccceEEee-----
Q 001319 868 STIHIYNVRVDEVKSKLKGHQKRITG---------LAFSTSL---NILVSSGADAQLCVWSIDTWEKRKSVTIHI----- 930 (1101)
Q Consensus 868 g~v~iwd~~~~~~~~~~~~h~~~V~~---------l~~s~d~---~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~----- 930 (1101)
..|.-.|+.+++.+..++.....+.. +.+..++ +.++.++.+|.+.++|..+|+.+.......
T Consensus 270 ~sivAld~~tG~~~W~~Q~~~~D~wd~d~~~~~~l~~~~~~g~~~~~v~~~~k~G~~~~lDr~tG~~i~~~~~~~~~~~~ 349 (560)
T d1kv9a2 270 SSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAE 349 (560)
T ss_dssp TEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEE
T ss_pred eeeEEecCCccceeEEEeccccccccccccceeeeeeeecCCceeeeeeecCccceEEEEecCCCccccccccccccccc
Confidence 35667788888887665543322221 2222234 367778899999999999998653321100
Q ss_pred ------------------------cCCCC-CCCcceEEEcCCCCEEEEEe------------------------------
Q 001319 931 ------------------------PAGKT-PTGDTRVQFNADQVRMLVVH------------------------------ 955 (1101)
Q Consensus 931 ------------------------~~~~~-~~~v~~~~~s~d~~~l~~~~------------------------------ 955 (1101)
..+.. ...-...+++|+...+.+..
T Consensus 350 ~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 429 (560)
T d1kv9a2 350 KVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADAT 429 (560)
T ss_dssp EECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCC
T ss_pred ccChhhccccccccccccccceeeeeccccccccccccccCCCCeeecccccccceeeccccccccccccccccCccccc
Confidence 00000 01123567788877777621
Q ss_pred -------CCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 956 -------ETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 956 -------d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.+.+.-+|+.+++.+-...... +...-.++-.|.++++|+.||.++-+|.++|+.+-.+..
T Consensus 430 ~~p~~~~~G~l~A~D~~tGk~~W~~~~~~----~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~l 497 (560)
T d1kv9a2 430 DVPAAVVSGALLAWDPVKQKAAWKVPYPT----HWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFEA 497 (560)
T ss_dssp CCCGGGCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CCCCcccccceEEEeCCCCeEeeeccCCC----CCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEEC
Confidence 1457888999999887766532 222222334577889999999999999999999988774
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.029 Score=55.41 Aligned_cols=238 Identities=11% Similarity=0.003 Sum_probs=142.1
Q ss_pred eEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEE-CCCeEEEEeec
Q 001319 358 TLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAF-TKHLIQLYSYA 436 (1101)
Q Consensus 358 ~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~-~d~~i~vwd~~ 436 (1101)
+||++ ....|+-.++++.+... +......+.+++|.+..+.|.... .++.|.-.++.
T Consensus 3 fLl~s--~~~~I~~~~l~~~~~~~--------------------~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~ 60 (266)
T d1ijqa1 3 YLFFT--NRHEVRKMTLDRSEYTS--------------------LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLD 60 (266)
T ss_dssp EEEEE--CBSSEEEEETTSCCCEE--------------------EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-
T ss_pred EEEEE--CCCeEEEEECCCCccee--------------------eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEec
Confidence 45554 34468888887654321 222445678999999888887765 45667766665
Q ss_pred CCcccccce-eeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEE-eecCCcCeEEEecccCCCccEEEEe
Q 001319 437 GSNDLRQHS-QIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFN-FEGHEAPVYSICPHHKENIQFIFST 514 (1101)
Q Consensus 437 ~~~~~~~~~-~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~-~~~h~~~v~~v~~~~~~~~~~l~s~ 514 (1101)
......... .+......+..+++.+.++. +.++-...+.|.+.+.+|..... +.........+++.+. .|.+.++.
T Consensus 61 ~~~~~~~~~~~~~~~~~~p~glAvD~~~~~-lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~-~g~ly~~~ 138 (266)
T d1ijqa1 61 RAHGVSSYDTVISRDIQAPDGLAVDWIHSN-IYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPV-HGFMYWTD 138 (266)
T ss_dssp -------CEEEECSSCSCCCEEEEETTTTE-EEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETT-TTEEEEEE
T ss_pred CCCCCcceEEEEeCCCCCcceEEEeeccce-EEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcc-cCeEEEec
Confidence 432211111 12233345778999887776 45566677899999966655433 4444566788888764 33333332
Q ss_pred -ccCCeEEEEecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCC-cceEEEE
Q 001319 515 -AIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRK-KSNGVVQ 592 (1101)
Q Consensus 515 -~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~-~~v~~~~ 592 (1101)
+..+.|...+++................++++.+.++.|..+-. ..+.|...++.............. .....++
T Consensus 139 ~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~---~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~la 215 (266)
T d1ijqa1 139 WGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDS---KLHSISSIDVNGGNRKTILEDEKRLAHPFSLA 215 (266)
T ss_dssp CSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEET---TTTEEEEEETTSCSCEEEEECTTTTSSEEEEE
T ss_pred cCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecC---CcCEEEEEECCCCCEEEEEeCCCcccccEEEE
Confidence 23456766676655444444444456789999998888887643 467898888876544333333222 1233455
Q ss_pred EeCCCCEEEEEe-CCCcEEEEECCCCeeeEeec
Q 001319 593 FDTTQNHFLAVG-EDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 593 ~~~~~~~l~~~~-~dg~i~iwd~~~~~~~~~~~ 624 (1101)
+. +.+|+... .++.|+..+..++.....+.
T Consensus 216 v~--~~~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 216 VF--EDKVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp EE--TTEEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EE--CCEEEEEECCCCeEEEEECCCCcceEEEE
Confidence 55 45555554 66788888877776555443
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.71 E-value=0.02 Score=56.61 Aligned_cols=220 Identities=9% Similarity=-0.026 Sum_probs=130.6
Q ss_pred eecCCCcEEEEEEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCC
Q 001319 340 SLHQGSTVISMDFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGN 419 (1101)
Q Consensus 340 ~~~h~~~V~~v~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~ 419 (1101)
.+.....+.+++|.+.++++..+-...+.|.--+++....... ...+.......+..+|+.+.++
T Consensus 25 ~~~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~---------------~~~~~~~~~~~p~glAvD~~~~ 89 (266)
T d1ijqa1 25 LIPNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSS---------------YDTVISRDIQAPDGLAVDWIHS 89 (266)
T ss_dssp EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-----------------------CEEEECSSCSCCCEEEEETTTT
T ss_pred eeCCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcc---------------eEEEEeCCCCCcceEEEeeccc
Confidence 3445567889999998887765544566676666553221110 0011222334577899988777
Q ss_pred EEEEEE-CCCeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeec-CCcCe
Q 001319 420 YVGVAF-TKHLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG-HEAPV 497 (1101)
Q Consensus 420 ~las~~-~d~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~-h~~~v 497 (1101)
.|..+. ..+.|.+.++++..... .+.........+++.|....++..-.+..+.|.-.+.+|.....+.. .-...
T Consensus 90 ~lY~~d~~~~~I~v~~~~g~~~~~---~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p 166 (266)
T d1ijqa1 90 NIYWTDSVLGTVSVADTKGVKRKT---LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWP 166 (266)
T ss_dssp EEEEEETTTTEEEEEETTSSSEEE---EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCE
T ss_pred eEEEEecCCCEEEeEecCCceEEE---EEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceeccccccccee
Confidence 776664 55789999998755332 34445567889999997765333333444566666677776665543 33557
Q ss_pred EEEecccCCCccEEEEeccCCeEEEEecCCCCeeeeccCCC--CceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCe
Q 001319 498 YSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVDYDAPG--HWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGT 575 (1101)
Q Consensus 498 ~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~--~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~ 575 (1101)
.++++.+.. +.+.++-...+.|...+++............ ....++++. +.+|..... +.+.|...+..++.
T Consensus 167 ~gl~iD~~~-~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~~~ly~td~---~~~~I~~~~~~~g~ 240 (266)
T d1ijqa1 167 NGITLDLLS-GRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--EDKVFWTDI---INEAIFSANRLTGS 240 (266)
T ss_dssp EEEEEETTT-TEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--TTEEEEEET---TTTEEEEEETTTCC
T ss_pred eEEEeeccc-cEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--CCEEEEEEC---CCCeEEEEECCCCc
Confidence 888886643 2344555667899988987655444333322 235566665 345554432 36677777777776
Q ss_pred eEEEeccc
Q 001319 576 IKRTYAGF 583 (1101)
Q Consensus 576 ~~~~~~~~ 583 (1101)
....+...
T Consensus 241 ~~~~~~~~ 248 (266)
T d1ijqa1 241 DVNLLAEN 248 (266)
T ss_dssp CCEEEECS
T ss_pred ceEEEEcC
Confidence 55555443
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.70 E-value=0.012 Score=65.78 Aligned_cols=60 Identities=13% Similarity=0.062 Sum_probs=44.4
Q ss_pred CCeEEEEEcCCceeeeEeccCCC-CCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 956 ETQLAIYDASKMERIRQWTPQDA-LSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 956 d~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
.+.|.-+|+.+++.+-....... ..+.+ +-.|.++++|+.||.++-+|.++|+.+-.+..
T Consensus 443 ~G~l~AiD~~TG~~~W~~~~~~~~~~g~l-----~TagglVf~G~~dg~l~A~Da~tGe~lW~~~l 503 (571)
T d2ad6a1 443 MGQIRAFDLTTGKAKWTKWEKFAAWGGTL-----YTKGGLVWYATLDGYLKALDNKDGKELWNFKM 503 (571)
T ss_dssp CEEEEEECTTTCCEEEEEEESSCCCSBCE-----EETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred cccEEEeccCCCceeeEcCCCCCCCccee-----EecCCEEEEECCCCeEEEEECCCCcEEEEEEC
Confidence 36788899999998876654311 12222 22466888999999999999999999988764
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.69 E-value=0.013 Score=57.95 Aligned_cols=204 Identities=8% Similarity=-0.001 Sum_probs=133.2
Q ss_pred CCCEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE
Q 001319 804 EEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK 881 (1101)
Q Consensus 804 ~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~ 881 (1101)
...+.+++|.+.++.+...+ ++.|+..++........+......+..+++....+.+..+-...+.|.+.++......
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~ 114 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRR 114 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEE
Confidence 34477889998888777765 5789999987666555554444678899998734445555566789999998765443
Q ss_pred EeeccCCCCeeEEEEcCCCCEEEEEeCC-CcEEEE--ECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--C
Q 001319 882 SKLKGHQKRITGLAFSTSLNILVSSGAD-AQLCVW--SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--E 956 (1101)
Q Consensus 882 ~~~~~h~~~V~~l~~s~d~~~l~s~s~D-g~v~lw--d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d 956 (1101)
..+......+..+++.|...+|...... +..+|| +++..... .+. ..+ ......+++++.+..|...+ .
T Consensus 115 ~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~---~i~-~~~--~~~P~glaiD~~~~~lYw~d~~~ 188 (263)
T d1npea_ 115 VLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRR---ILA-QDN--LGLPNGLTFDAFSSQLCWVDAGT 188 (263)
T ss_dssp EEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCE---EEE-CTT--CSCEEEEEEETTTTEEEEEETTT
T ss_pred EEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCce---eee-eec--ccccceEEEeecCcEEEEEeCCC
Confidence 3333344678999999987777654332 233444 55443221 111 111 14567899999888887765 6
Q ss_pred CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEE-EEeCCCcEEEEeCCCCceeEeeC
Q 001319 957 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVF-ATFCDGNIGVFDADTLRLRCYIA 1019 (1101)
Q Consensus 957 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~-s~~~dg~i~vwd~~~~~~~~~~~ 1019 (1101)
+.|...+++.......+.. ......|++. +.+|. +-...+.|...|..+++....+.
T Consensus 189 ~~I~~~~~~g~~~~~v~~~----~~~P~~lav~--~~~lYwtd~~~~~I~~~~~~~g~~~~~~~ 246 (263)
T d1npea_ 189 HRAECLNPAQPGRRKVLEG----LQYPFAVTSY--GKNLYYTDWKTNSVIAMDLAISKEMDTFH 246 (263)
T ss_dssp TEEEEEETTEEEEEEEEEC----CCSEEEEEEE--TTEEEEEETTTTEEEEEETTTTEEEEEEC
T ss_pred CEEEEEECCCCCeEEEECC----CCCcEEEEEE--CCEEEEEECCCCEEEEEECCCCccceEEC
Confidence 7899999986655444433 2234567764 44555 44467889999999998877665
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=97.66 E-value=0.032 Score=62.02 Aligned_cols=195 Identities=13% Similarity=0.045 Sum_probs=112.8
Q ss_pred CCCceEEEEecCCceEEEEE-c-CCceeEEeecCCcC----e-------EEEecccCCCccEEEEeccCCeEEEEecCCC
Q 001319 462 PNKLLCVVTCGDDKLIKVWE-L-SGRKLFNFEGHEAP----V-------YSICPHHKENIQFIFSTAIDGKIKAWLYDTM 528 (1101)
Q Consensus 462 d~~~~~l~s~~~d~~v~iwd-~-~~~~~~~~~~h~~~----v-------~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~ 528 (1101)
+|. ++++.+.++.|...| . +|+.+.++...... . ..+++. +..++.++.|+.+..-|.+++
T Consensus 62 ~g~--vyv~t~~~~~v~Alda~~tG~~~W~~~~~~~~~~~~~~~~~~~~rg~a~~----~~~i~~~~~~g~l~alda~tG 135 (571)
T d2ad6a1 62 GDM--MYVHSAFPNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYG----AGQIVKKQANGHLLALDAKTG 135 (571)
T ss_dssp TTE--EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEE----TTEEEEECTTSEEEEEETTTC
T ss_pred CCE--EEEecCCCCeEEEEeCCCCCceEEEecCCCCcccccccccCcCCCcceee----CCeEEEEeCCCcEEeeehhhh
Confidence 454 334444467777777 4 58888776421110 0 112221 236778889999999999999
Q ss_pred CeeeeccCCCC----ceEEEEEccCCCEEEEeec-CCCCCceEEEEeCCCCeeEEEecccC-------------------
Q 001319 529 GSRVDYDAPGH----WCTTMLYSADGSRLFSCGT-SKDGDSFLVEWNESEGTIKRTYAGFR------------------- 584 (1101)
Q Consensus 529 ~~~~~~~~~~~----~v~~~~~s~d~~~l~~~~~-~~~~~~~i~iwd~~~~~~~~~~~~~~------------------- 584 (1101)
+.......... .+++.-.-.++..++..+. .....+.|+-+|..+|+.+-++....
T Consensus 136 ~~~w~~~~~~~~~~~~~t~~p~v~~~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~~ 215 (571)
T d2ad6a1 136 KINWEVEVCDPKVGSTLTQAPFVAKDTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFATGSDDSVRLAKDFNSANPHYG 215 (571)
T ss_dssp CEEEEEECCCGGGTCBCCSCCEEETTEEEEECBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGC
T ss_pred hhhccccccccccccceeecCeEeCCeEEEeeccccccccCcEEEEECCCCcEEEEEeccCCcccccccccccccccccC
Confidence 88765533211 1111111123333333221 11236789999999999987754321
Q ss_pred ------------------CcceEEEEEeCCCCEEEEEeC----------------CCcEEEEECCCCeeeEeeccCCCC-
Q 001319 585 ------------------KKSNGVVQFDTTQNHFLAVGE----------------DSQIKFWDMDNVNILTSTDAEGGL- 629 (1101)
Q Consensus 585 ------------------~~~v~~~~~~~~~~~l~~~~~----------------dg~i~iwd~~~~~~~~~~~~~~~~- 629 (1101)
.......++.+....++.+.. ...+.-.|.++|+.+..++...+.
T Consensus 216 ~~~~~~~~~~~~~~~~~gg~vW~~~s~D~~~g~~y~~tg~~~p~~~~~r~g~n~~s~svvAld~~TG~~~W~~q~~~~D~ 295 (571)
T d2ad6a1 216 QFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDE 295 (571)
T ss_dssp CSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCS
T ss_pred cccccccccCCcccccCCCccccccccchhcCeeeeecccccCccccccccccccccceeeeeccchhheecccccCccc
Confidence 001123567777777776543 245778899999998877654331
Q ss_pred ------CCCCeeEEecCCC---EEEEEEcCCcEEEEEccccc
Q 001319 630 ------PNLPRLRFSKEGN---LLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 630 ------~~v~~v~~s~~g~---~l~~~~~d~~i~iwd~~~~~ 662 (1101)
.......+..+++ .++.++.+|.+.++|..+++
T Consensus 296 Wd~D~~~~~~l~~~~~~g~~~~~v~~~~k~G~l~vlDr~tG~ 337 (571)
T d2ad6a1 296 WDFAGVNQMVLTDQPVNGKMTPLLSHIDRNGILYTLNRENGN 337 (571)
T ss_dssp SCCCCCCCCEEEEEEETTEEEEEEEEECTTSEEEEEETTTCC
T ss_pred cccccccccceeeeeccCccccceeeccccceEEEEecCCCc
Confidence 0111122223443 45677889999999999884
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.64 E-value=0.018 Score=64.53 Aligned_cols=60 Identities=20% Similarity=0.140 Sum_probs=44.5
Q ss_pred CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 957 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 957 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+.|.-||..+++.+-..... .++..-.++-.|.+++.|+.||.++-+|.++|+.+-.+..
T Consensus 453 G~l~A~D~~TG~~~W~~~~~----~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~~ 512 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMER----FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFKI 512 (596)
T ss_dssp EEEEEECTTTCCEEEEEEES----SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred ceEEEEeCCCCceecccCCC----CCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEEC
Confidence 57888899999887665432 1222222234678888999999999999999999988874
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.63 E-value=0.014 Score=65.27 Aligned_cols=201 Identities=11% Similarity=0.063 Sum_probs=109.6
Q ss_pred EEEEEECCCeEEEEeecCCccccccee----eecc---cCcE-EEEEEecCCCceEEEEecCCceEEEEE-cCCceeEEe
Q 001319 420 YVGVAFTKHLIQLYSYAGSNDLRQHSQ----IDAH---VGAV-NDLAFAYPNKLLCVVTCGDDKLIKVWE-LSGRKLFNF 490 (1101)
Q Consensus 420 ~las~~~d~~i~vwd~~~~~~~~~~~~----l~~h---~~~V-~~l~~s~d~~~~~l~s~~~d~~v~iwd-~~~~~~~~~ 490 (1101)
.|.+++.++.|.-+|.++|+.+-++.. ...+ ...+ ..+++. ++ .++.++.|+.+.-.| .+|+.+...
T Consensus 79 ~vyv~t~~~~v~AlDa~TG~~~W~~~~~~~~~~~~~~~~~~~~~g~~~~-~~---~v~~~t~~g~l~alda~tG~~~W~~ 154 (573)
T d1kb0a2 79 IMYVSASWSVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALW-KG---KVYVGAWDGRLIALDAATGKEVWHQ 154 (573)
T ss_dssp EEEEECGGGCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEE-TT---EEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCeEEEEeCCCCCeEEEeCCCCCcccccccccccccccceEE-CC---cEEEEecccceeeeccccccceecc
Confidence 344556666677777777765432100 0000 0111 122332 33 366677889998889 899988665
Q ss_pred ecCCcCeEEEecc--cC-CCccEEEEecc------CCeEEEEecCCCCeeeeccCCC-----------------------
Q 001319 491 EGHEAPVYSICPH--HK-ENIQFIFSTAI------DGKIKAWLYDTMGSRVDYDAPG----------------------- 538 (1101)
Q Consensus 491 ~~h~~~v~~v~~~--~~-~~~~~l~s~~~------d~~i~~wd~~~~~~~~~~~~~~----------------------- 538 (1101)
.........+.+. |. -+ ..+++++. .|.|+.+|..+++.+..+....
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~-~~vivg~~~~~~~~~G~v~a~D~~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~t~~~~~ 233 (573)
T d1kb0a2 155 NTFEGQKGSLTITGAPRVFK-GKVIIGNGGAEYGVRGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSG 233 (573)
T ss_dssp ETTTTCCSSCBCCSCCEEET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGG
T ss_pred cCccCCcceEEeecceEEEe-ccEEEeeccccccccceEEEEecCCccceeeeeeccccCCCCCCcccccccccccCCCC
Confidence 4322111111100 00 02 24455432 4689999999999887643211
Q ss_pred --------Cce-EEEEEccCCCEEEEeecC---------------CCCCceEEEEeCCCCeeEEEecccCCc--------
Q 001319 539 --------HWC-TTMLYSADGSRLFSCGTS---------------KDGDSFLVEWNESEGTIKRTYAGFRKK-------- 586 (1101)
Q Consensus 539 --------~~v-~~~~~s~d~~~l~~~~~~---------------~~~~~~i~iwd~~~~~~~~~~~~~~~~-------- 586 (1101)
..+ ..+++.++...+...... ......|...|.++++..-.++.....
T Consensus 234 ~~~~~~~G~~vW~~~s~D~~~g~~~~~~g~~~~~~~~~~~~~~g~~~~~~svvAld~~tG~~~W~~q~~~~d~wd~d~~~ 313 (573)
T d1kb0a2 234 KWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQ 313 (573)
T ss_dssp CHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCS
T ss_pred ceeecCCCCcccccceEchhhCeeeeccCCCccccccccccccccccccceEEEecccchheeecccccCcccccccccc
Confidence 011 235566666666543321 012335777888999887666542210
Q ss_pred ceEEEEEeCCC---CEEEEEeCCCcEEEEECCCCeeeEeecc
Q 001319 587 SNGVVQFDTTQ---NHFLAVGEDSQIKFWDMDNVNILTSTDA 625 (1101)
Q Consensus 587 ~v~~~~~~~~~---~~l~~~~~dg~i~iwd~~~~~~~~~~~~ 625 (1101)
.........++ ..++.++.+|.++++|..+|+.+.....
T Consensus 314 ~~~l~~~~~~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~ 355 (573)
T d1kb0a2 314 PMILADIKIAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNF 355 (573)
T ss_dssp CCEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEEEEES
T ss_pred eeeecceecCCCceeeeeeccccceeEEeccccccccccccc
Confidence 11112222333 3566678999999999999998877653
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.60 E-value=0.0041 Score=66.34 Aligned_cols=260 Identities=13% Similarity=0.067 Sum_probs=132.5
Q ss_pred cccccCCccceeeccCCCCCCCCEeEEEecCCCCeEEEEc--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEecCCCCE
Q 001319 784 QHWLPSSGLLMANDVAGVNLEEAVPCIALSKNDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQDNNI 860 (1101)
Q Consensus 784 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~~~~~ 860 (1101)
.+||+.++.-.........+.......++.+||++++.|. ...+.+||..+..-...-... ...-..++..+ |+++
T Consensus 55 ~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~-dG~v 133 (387)
T d1k3ia3 55 SSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMS-DGRV 133 (387)
T ss_dssp EEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEECCCCSSCCSSCEEEECT-TSCE
T ss_pred EEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccccccccccccccceeeec-CCce
Confidence 4566666653221111111333344567889999999986 357999999876554322211 12234566777 8899
Q ss_pred EEEEeCC------CcEEEEEeecceEEEeec---------cCC-----CCeeEEEEcCCCCEEEEEeCCCcEEEEECCCC
Q 001319 861 IAIGTED------STIHIYNVRVDEVKSKLK---------GHQ-----KRITGLAFSTSLNILVSSGADAQLCVWSIDTW 920 (1101)
Q Consensus 861 la~g~~d------g~v~iwd~~~~~~~~~~~---------~h~-----~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~ 920 (1101)
++.|+.+ ..+.+||..+.+-...-. .+. +.-..+...++|+.++.++.++.+.+++..+.
T Consensus 134 ~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~ 213 (387)
T d1k3ia3 134 FTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSG 213 (387)
T ss_dssp EEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTC
T ss_pred eeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccceeEEEEeCCCCEEEecCcCCcEEecCcccC
Confidence 9888753 368999988764321100 010 01112334457778888887777888887775
Q ss_pred ccccceEEeecCCCCCC--CcceEEE-cCCCCEEEEEe--C-------CeEEEEEcCCc---eeeeEeccCCCCCCCEEE
Q 001319 921 EKRKSVTIHIPAGKTPT--GDTRVQF-NADQVRMLVVH--E-------TQLAIYDASKM---ERIRQWTPQDALSAPISC 985 (1101)
Q Consensus 921 ~~~~~~~~~~~~~~~~~--~v~~~~~-s~d~~~l~~~~--d-------~~i~v~d~~~~---~~~~~~~~~~~h~~~v~~ 985 (1101)
................. .-.++.+ ..+++.++.+. + ....+.+.... ...........+...-.+
T Consensus 214 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~ 293 (387)
T d1k3ia3 214 DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFASNGLYFARTFHT 293 (387)
T ss_dssp EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECTTCCSSCCBSCE
T ss_pred cEeeccccccCcccCcccccccEEEeeccCCceEEEEeccCCCCCcccceeecccccccccCCCceeeccccccccccce
Confidence 54322222111111111 1122223 34566666642 1 12333333221 111111110000112234
Q ss_pred EEEccCCCEEEEEeCCC-----------cEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEEEEecCCCCEEEEEE
Q 001319 986 AVYSCNSQLVFATFCDG-----------NIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVVAAHPLEPNQFAIGL 1054 (1101)
Q Consensus 986 v~~s~dg~~l~s~~~dg-----------~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l~~~p~d~~~l~s~~ 1054 (1101)
....+||++++.|+.+. ++.+||..+.+-... .. .+.....|+ .....+ |+++|+.|+
T Consensus 294 ~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~-~~---~~~~R~~Hs------~a~l~~-dG~v~v~GG 362 (387)
T d1k3ia3 294 SVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQ-NP---NSIVRVYHS------ISLLLP-DGRVFNGGG 362 (387)
T ss_dssp EEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEEC-CC---CSSCCCTTE------EEEECT-TSCEEEEEC
T ss_pred eeeccCCeEEEECCcccCccCCCCcEeceEEEEECCCCeEEEC-CC---CCCcccceE------EEEECC-CCEEEEEeC
Confidence 55568999999888431 478899887754322 11 111111122 122345 789999988
Q ss_pred C
Q 001319 1055 T 1055 (1101)
Q Consensus 1055 ~ 1055 (1101)
.
T Consensus 363 ~ 363 (387)
T d1k3ia3 363 G 363 (387)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=97.59 E-value=0.019 Score=64.14 Aligned_cols=186 Identities=12% Similarity=0.097 Sum_probs=104.9
Q ss_pred eEEEEECCCceEEEEeeCCCC---------CeeEEEEecCCC---CEEEEEeCCCcEEEEEeecceEEEeeccCCC----
Q 001319 826 KISLFNMMTFKVMTTFMSPPP---------ASTFLAFHPQDN---NIIAIGTEDSTIHIYNVRVDEVKSKLKGHQK---- 889 (1101)
Q Consensus 826 ~i~vwd~~~~~~~~~~~~~~~---------~i~~l~~s~~~~---~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~---- 889 (1101)
.|.-.|+++++....++.... +........ ++ ..++.++.+|.++++|..+|+.+........
T Consensus 284 svvAld~~tG~~~W~~q~~~~d~wd~d~~~~~~l~~~~~-~g~~~~~v~~~~k~G~l~~lDr~tGe~~~~~~~~~~~~~~ 362 (573)
T d1kb0a2 284 SIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKI-AGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWAS 362 (573)
T ss_dssp EEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEE-TTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEE
T ss_pred eEEEecccchheeecccccCcccccccccceeeecceec-CCCceeeeeeccccceeEEecccccccccccccccccccc
Confidence 366667777777766554221 122222222 22 4677888999999999999987754321100
Q ss_pred -------------------------------CeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCC
Q 001319 890 -------------------------------RITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTG 938 (1101)
Q Consensus 890 -------------------------------~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~ 938 (1101)
.-..++++|+...++....+....++.....+...........+ ..
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g---~~ 439 (573)
T d1kb0a2 363 GYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSG---TG 439 (573)
T ss_dssp EECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGG---GT
T ss_pred ccccccceeeeeeccccccceEEeecccCCccccccccCCCcceEEeeccccceeeecccccccccCCCCccccc---cc
Confidence 01124677777777777777666666655433211100000000 00
Q ss_pred cceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEee
Q 001319 939 DTRVQFNADQVRMLVVHETQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYI 1018 (1101)
Q Consensus 939 v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~ 1018 (1101)
.....+ +++.-.....-+.+.-||..+++.+-...... +...-..+-.|.+|++|+.||.++.+|.++|+.+-.+
T Consensus 440 ~~~~~~-~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~----p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~ 514 (573)
T d1kb0a2 440 WNTAKF-FNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVS----PWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEA 514 (573)
T ss_dssp CCCCEE-ECSSCCCSCCEEEEEEEETTTTEEEEEEEESS----SCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccc-cccCCCCCCCcccEEEeCCCCCceEeeecCCC----CCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEE
Confidence 000000 00000000112578889999999887766532 1111123346889999999999999999999999887
Q ss_pred CC
Q 001319 1019 AP 1020 (1101)
Q Consensus 1019 ~~ 1020 (1101)
..
T Consensus 515 ~~ 516 (573)
T d1kb0a2 515 PT 516 (573)
T ss_dssp EC
T ss_pred EC
Confidence 74
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.58 E-value=0.057 Score=60.24 Aligned_cols=60 Identities=20% Similarity=0.225 Sum_probs=45.7
Q ss_pred CeEEEEEcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCCCceeEeeCC
Q 001319 957 TQLAIYDASKMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADTLRLRCYIAP 1020 (1101)
Q Consensus 957 ~~i~v~d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 1020 (1101)
+.+.-+|+.+++.+-....+. ++..-.++-.|.++++|+.||.++-+|.++|+.+-.+..
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~----p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~ 525 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHL----PLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQT 525 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESS----CCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEEC
T ss_pred CeEEEEcCCCCcEEeecCCCC----CCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEEC
Confidence 568888889998887766532 222222345678889999999999999999999988874
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.58 E-value=0.028 Score=60.37 Aligned_cols=248 Identities=10% Similarity=0.056 Sum_probs=134.6
Q ss_pred cEEEEEEecCCceEEEEEeccC----cEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEE
Q 001319 346 TVISMDFHPSHQTLLLVGSSNG----EITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYV 421 (1101)
Q Consensus 346 ~V~~v~fspdg~~llasg~~d~----~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l 421 (1101)
.+..+++||||++++.+-+.+| .|++.|+.+++.+.. .+. ......++|++|++.|
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~------------------~i~--~~~~~~~~W~~D~~~~ 185 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD------------------VLE--RVKFSCMAWTHDGKGM 185 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE------------------EEE--EECSCCEEECTTSSEE
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc------------------ccc--cccccceEEcCCCCEE
Confidence 4556788999997766544444 799999999986541 011 1122568999999988
Q ss_pred EEEECC----------------CeEEEEeecCCcccccceeeecc--cCcEEEEEEecCCCceEEEEec-CCceEEEE--
Q 001319 422 GVAFTK----------------HLIQLYSYAGSNDLRQHSQIDAH--VGAVNDLAFAYPNKLLCVVTCG-DDKLIKVW-- 480 (1101)
Q Consensus 422 as~~~d----------------~~i~vwd~~~~~~~~~~~~l~~h--~~~V~~l~~s~d~~~~~l~s~~-~d~~v~iw-- 480 (1101)
+....+ ..|..|.+.+...-.. ..+... ...+..+..+.|++++++.+.. .+....+|
T Consensus 186 ~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~~d~-~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~ 264 (430)
T d1qfma1 186 FYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDI-LCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYC 264 (430)
T ss_dssp EEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCE-EEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEE
T ss_pred EEEEeccccCcccccccccCCcceEEEEECCCCccccc-cccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEe
Confidence 765432 2577777766543211 123332 2346678889999963332332 33344444
Q ss_pred E-cCCc--------eeEEeecCCcCeEEEecccCCCccEEEEec---cCCeEEEEecCCCCee---eeccCCCCceEEEE
Q 001319 481 E-LSGR--------KLFNFEGHEAPVYSICPHHKENIQFIFSTA---IDGKIKAWLYDTMGSR---VDYDAPGHWCTTML 545 (1101)
Q Consensus 481 d-~~~~--------~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~---~d~~i~~wd~~~~~~~---~~~~~~~~~v~~~~ 545 (1101)
| .... ....+.........+.. . ++.+++... .++.|...++...... ..+..+...+..-.
T Consensus 265 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~ 341 (430)
T d1qfma1 265 DLQQESNGITGILKWVKLIDNFEGEYDYVTN--E-GTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWV 341 (430)
T ss_dssp EGGGSSSSSCSSCCCEEEECSSSSCEEEEEE--E-TTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEE
T ss_pred eCCCcccccccccceeEeecccccceEEEec--C-CceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeE
Confidence 4 2111 01122222222332221 1 222333332 2356666666654321 12223333444444
Q ss_pred EccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEe----CCCcEEEEECCCCee
Q 001319 546 YSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVG----EDSQIKFWDMDNVNI 619 (1101)
Q Consensus 546 ~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~----~dg~i~iwd~~~~~~ 619 (1101)
++..+.+|+.... .++...|++++..++.....+..... .+..+...++...+...- .-.+++-+|+.+++.
T Consensus 342 ~~~~~~~lvl~~~-~~~~~~l~v~~~~~~~~~~~~~~~~~-sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~ 417 (430)
T d1qfma1 342 ACVRSNFLVLCYL-HDVKNTLQLHDLATGALLKIFPLEVG-SVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEEL 417 (430)
T ss_dssp EEETTTEEEEEEE-ETTEEEEEEEETTTCCEEEEECCCSS-EEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSC
T ss_pred EEEECCEEEEEEE-cCCEeEEEEEECCCCcEEEecCCCCc-eEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCc
Confidence 5555566665542 24567899999998877665544332 454454455555444332 347889999988754
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=97.58 E-value=0.018 Score=61.08 Aligned_cols=98 Identities=8% Similarity=-0.002 Sum_probs=64.8
Q ss_pred EEEEecCCCCeee--e-ccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEecccCCcceEEEEEeCC
Q 001319 520 IKAWLYDTMGSRV--D-YDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTT 596 (1101)
Q Consensus 520 i~~wd~~~~~~~~--~-~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~ 596 (1101)
+.+||..+..-.. . ...+.......++.++|+.++.++. ....+.+||..+......-...........+..+|
T Consensus 54 ~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~---~~~~~~~yd~~~~~w~~~~~~~~~r~~~~~~~~~d 130 (387)
T d1k3ia3 54 TSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGN---DAKKTSLYDSSSDSWIPGPDMQVARGYQSSATMSD 130 (387)
T ss_dssp EEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSS---STTCEEEEEGGGTEEEECCCCSSCCSSCEEEECTT
T ss_pred EEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecC---CCcceeEecCccCcccccccccccccccceeeecC
Confidence 6689887754321 1 1222333456788899999998875 24578999998877654333322323455777889
Q ss_pred CCEEEEEeCC------CcEEEEECCCCeee
Q 001319 597 QNHFLAVGED------SQIKFWDMDNVNIL 620 (1101)
Q Consensus 597 ~~~l~~~~~d------g~i~iwd~~~~~~~ 620 (1101)
|+.++.|+.+ ..+.+||..+.+..
T Consensus 131 G~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 131 GRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp SCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred CceeeeccccccccccceeeeecCCCCcee
Confidence 9988887742 36899999887653
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.57 E-value=0.04 Score=53.20 Aligned_cols=230 Identities=13% Similarity=0.148 Sum_probs=144.1
Q ss_pred EEecCCceEEEEEeccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEccCCCEEEEEECCCeE
Q 001319 351 DFHPSHQTLLLVGSSNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWSPDGNYVGVAFTKHLI 430 (1101)
Q Consensus 351 ~fspdg~~llasg~~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~las~~~d~~i 430 (1101)
-.+|..+ ++|.-+ ...+.|+|+++.+++.... ....|..-.|-.+ +.|+..+ +..|
T Consensus 69 IMhP~~~-IiALra-g~~LQiFnletK~klks~~--------------------~~e~VvfWkWis~-~~L~lVT-~taV 124 (327)
T d1utca2 69 IMNPASK-VIALKA-GKTLQIFNIEMKSKMKAHT--------------------MTDDVTFWKWISL-NTVALVT-DNAV 124 (327)
T ss_dssp EECSSSS-EEEEEE-TTEEEEEETTTTEEEEEEE--------------------CSSCCCEEEESSS-SEEEEEC-SSEE
T ss_pred hcCCCCc-EEEEec-CCeEEEEehhHhhhhceEE--------------------cCCCcEEEEecCC-CEEEEEc-CCce
Confidence 3467776 666544 5589999999988775311 2346777788744 4555554 4469
Q ss_pred EEEeecCCcccccceeeeccc----CcEEEEEEecCCCceEEEE-ec----CCceEEEEEcCCceeEEeecCCcCeEEEe
Q 001319 431 QLYSYAGSNDLRQHSQIDAHV----GAVNDLAFAYPNKLLCVVT-CG----DDKLIKVWELSGRKLFNFEGHEAPVYSIC 501 (1101)
Q Consensus 431 ~vwd~~~~~~~~~~~~l~~h~----~~V~~l~~s~d~~~~~l~s-~~----~d~~v~iwd~~~~~~~~~~~h~~~v~~v~ 501 (1101)
.-|++++.... .+.+..|. ..|..-..+++.+++.|+- +. -.|.+.+|..+.+.-+.+.||.+.-..+.
T Consensus 125 YHW~~~g~s~P--~k~fdR~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa~F~~~~ 202 (327)
T d1utca2 125 YHWSMEGESQP--VKMFDRHSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAASFAQFK 202 (327)
T ss_dssp EEEESSSSCCC--EEEEECCGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEEEEEEEC
T ss_pred EEEcccCCCCc--hhhhhhcccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceeeeeEEEE
Confidence 99999754432 22444443 3577777888888532221 11 23578899988888889999987776665
Q ss_pred cccCCCcc-EEEEe---ccCCeEEEEecCCCC---ee-----eecc----CCCCceEEEEEccCCCEEEEeecCCCCCce
Q 001319 502 PHHKENIQ-FIFST---AIDGKIKAWLYDTMG---SR-----VDYD----APGHWCTTMLYSADGSRLFSCGTSKDGDSF 565 (1101)
Q Consensus 502 ~~~~~~~~-~l~s~---~~d~~i~~wd~~~~~---~~-----~~~~----~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~ 565 (1101)
+....... +++.+ ...+.+++-++.... .. ..+. ...+...++..|+.-..+...+. .|.
T Consensus 203 ~~g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK----~G~ 278 (327)
T d1utca2 203 MEGNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITK----YGY 278 (327)
T ss_dssp CTTCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEET----TSE
T ss_pred cCCCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEec----CcE
Confidence 54332222 33322 223678888886632 11 1121 12345678888888777777764 899
Q ss_pred EEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEE
Q 001319 566 LVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKF 611 (1101)
Q Consensus 566 i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i 611 (1101)
|++||++++.++..-+-..+ .+...+-..+..-+++...+|.|..
T Consensus 279 i~lyDleTgt~i~~nRIs~~-~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 279 IHLYDLETGTCIYMNRISGE-TIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEEETTTCCEEEEEECCSS-CEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEEEEcccccEEEEeecCCC-ceEEeccCCCCceEEEECCCCeEEE
Confidence 99999999998887665444 4544444555555666666666543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=97.57 E-value=0.053 Score=60.49 Aligned_cols=194 Identities=12% Similarity=0.030 Sum_probs=111.5
Q ss_pred EEEEecCCceEEEEE--cCCceeEEeecCCc----------Ce-EEEecccC--CCccEEEEeccCCeEEEEecCCCCee
Q 001319 467 CVVTCGDDKLIKVWE--LSGRKLFNFEGHEA----------PV-YSICPHHK--ENIQFIFSTAIDGKIKAWLYDTMGSR 531 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd--~~~~~~~~~~~h~~----------~v-~~v~~~~~--~~~~~l~s~~~d~~i~~wd~~~~~~~ 531 (1101)
++++++.++.|...| .+|+.+.++..... .+ ..+++... ....+++.++.|+.|.-.|.++++..
T Consensus 65 ly~~t~~~~~v~a~d~~~tG~~~W~~~~~~~~~~~~~~~~~~~~RGv~~~~~~~~~~~~v~~~t~dg~l~Alda~tG~~~ 144 (596)
T d1w6sa_ 65 MYIHTSFPNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQLDGNVAALNAETGETV 144 (596)
T ss_dssp EEEECSTTTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEE
T ss_pred EEEeeCCCCcEEEEeCCCCCCEEEEecCCCCcccccccccccccceeEEecCCCCCceEEEEEeCCCCeEeeccccCcee
Confidence 344444455565556 36777766532110 01 22333221 22347888999999999999999888
Q ss_pred eeccCCCC----ceEE-EEEccCCCEEEEeec--CCCCCceEEEEeCCCCeeEEEecccC--------------------
Q 001319 532 VDYDAPGH----WCTT-MLYSADGSRLFSCGT--SKDGDSFLVEWNESEGTIKRTYAGFR-------------------- 584 (1101)
Q Consensus 532 ~~~~~~~~----~v~~-~~~s~d~~~l~~~~~--~~~~~~~i~iwd~~~~~~~~~~~~~~-------------------- 584 (1101)
..+..... .+++ ..+ -+..++.+.. .....+.|+-+|..+|+.+-++....
T Consensus 145 w~~~~~d~~~~~~~t~~P~v--~~~~vivg~~~~e~~~~G~v~A~Da~TG~~~W~~~t~~~~~~~~~~~~~~~~~~~~g~ 222 (596)
T d1w6sa_ 145 WKVENSDIKVGSTLTIAPYV--VKDKVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQ 222 (596)
T ss_dssp EEEECCCGGGTCBCCSCCEE--ETTEEEECCBCGGGTCCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCC
T ss_pred ccccccccccccccccCCcE--ECCeEEEeeccccccccCceEEEECCCCcEEEEeeccCCccccccccccccccccccc
Confidence 77643221 1111 111 1234444432 11235889999999999987754211
Q ss_pred -----------------CcceEEEEEeCCCCEEEEEeCC----------------CcEEEEECCCCeeeEeeccCCCCC-
Q 001319 585 -----------------KKSNGVVQFDTTQNHFLAVGED----------------SQIKFWDMDNVNILTSTDAEGGLP- 630 (1101)
Q Consensus 585 -----------------~~~v~~~~~~~~~~~l~~~~~d----------------g~i~iwd~~~~~~~~~~~~~~~~~- 630 (1101)
.......++.+..+.++.+..+ ..|.-.|..+|+.+..++...+..
T Consensus 223 ~~~~~~tw~g~~~~~gg~~~W~~~s~D~~~~lvy~~tg~~~p~~~~~r~g~n~ys~sivAlD~~TG~~~W~~Q~~~~D~W 302 (596)
T d1w6sa_ 223 KGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEW 302 (596)
T ss_dssp TTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSS
T ss_pred cccccccCCCCceecCCCccccccccccCCCeeecccccccccccccccccccccccccccccccccccccccceecccc
Confidence 0012235677777777775432 347788999999988775443311
Q ss_pred ---CCCe---eEE-ecCC---CEEEEEEcCCcEEEEEccccc
Q 001319 631 ---NLPR---LRF-SKEG---NLLAVTTADNGFKILANAIGL 662 (1101)
Q Consensus 631 ---~v~~---v~~-s~~g---~~l~~~~~d~~i~iwd~~~~~ 662 (1101)
.... +.. ..+| ..++....+|.+.++|..++.
T Consensus 303 d~d~~~~~~l~d~~~~~G~~~~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 303 DYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp CCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCC
T ss_pred CCccccceeeeeccccccccccceeccccccceeeecCCCCc
Confidence 0111 111 1244 357778889999999998883
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=97.54 E-value=0.044 Score=52.94 Aligned_cols=259 Identities=12% Similarity=0.131 Sum_probs=146.2
Q ss_pred CceEEEEeCCCCeeEEEecccCCcceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCC
Q 001319 563 DSFLVEWNESEGTIKRTYAGFRKKSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGN 642 (1101)
Q Consensus 563 ~~~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~ 642 (1101)
...+.+.|+..+..+.+..- ...+.-.+|..+.++.-+ ..++.++|+++.+.+....... .|.--.|-.+ +
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi----~AdsAIMhP~~~IiALra-g~~LQiFnletK~klks~~~~e---~VvfWkWis~-~ 114 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPI----SADSAIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTD---DVTFWKWISL-N 114 (327)
T ss_dssp EEEEEEEETTSTTSCEEEEC----CCSEEEECSSSSEEEEEE-TTEEEEEETTTTEEEEEEECSS---CCCEEEESSS-S
T ss_pred CceEEEEECCCCCcceeccc----chhhhhcCCCCcEEEEec-CCeEEEEehhHhhhhceEEcCC---CcEEEEecCC-C
Confidence 55788899876553322221 122355788888777755 5689999999999999887764 4555666543 4
Q ss_pred EEEEEEcCCcEEEEEccccccccccccCCCcccccCcceeeeeeeccccccccCCCCCcceeccCCCCCCceEEEEEEeC
Q 001319 643 LLAVTTADNGFKILANAIGLRSLRAVENPPFEALRTPIESVALKVSASSAVSSGTPANCKVERSSPVRPSPIILAEIVDS 722 (1101)
Q Consensus 643 ~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 722 (1101)
.|+..+ +..|+-|+++....+.+.+..+..-
T Consensus 115 ~L~lVT-~taVYHW~~~g~s~P~k~fdR~~~L------------------------------------------------ 145 (327)
T d1utca2 115 TVALVT-DNAVYHWSMEGESQPVKMFDRHSSL------------------------------------------------ 145 (327)
T ss_dssp EEEEEC-SSEEEEEESSSSCCCEEEEECCGGG------------------------------------------------
T ss_pred EEEEEc-CCceEEEcccCCCCchhhhhhcccc------------------------------------------------
Confidence 555555 3579999986554444444333221
Q ss_pred CCeEEEEcCCCCCCcccEEEEEeecCcccEEEee-------cCCeEEEEEecCCCC-CCCCCeeeeccccccccCCccce
Q 001319 723 GQCRLVTMPESTDTSSKVVRLLYTNSAVGLLALG-------SNGVQKLWKWHRNEQ-NPSGKATASAVPQHWLPSSGLLM 794 (1101)
Q Consensus 723 ~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~-------~dg~v~~w~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 794 (1101)
....|.....+++.++++..+ -.|.+.+|..+.... ..+|..- ...
T Consensus 146 -------------~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er~~sQ~ieGhaa-------------~F~ 199 (327)
T d1utca2 146 -------------AGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKVSQPIEGHAA-------------SFA 199 (327)
T ss_dssp -------------TTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTTTEEEEECCSEE-------------EEE
T ss_pred -------------cCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEeccCcCccccceee-------------eeE
Confidence 122333333333443333322 126677776553311 1111111 111
Q ss_pred eeccCCCCCCCCEeEEEecCCCCeEEEEc-CCeEEEEECCCce--------EEEEeeC----CCCCeeEEEEecCCCCEE
Q 001319 795 ANDVAGVNLEEAVPCIALSKNDSYVMSAT-GGKISLFNMMTFK--------VMTTFMS----PPPASTFLAFHPQDNNII 861 (1101)
Q Consensus 795 ~~~~~~~~~~~~v~~~~~s~dg~~la~~~-dg~i~vwd~~~~~--------~~~~~~~----~~~~i~~l~~s~~~~~~l 861 (1101)
...+.+..+...+.|.+.- +. .+++++.++.... ....+.- ..+-..++..|+ .-.++
T Consensus 200 ~~~~~g~~~~~~lf~fa~r--------~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~-kygii 270 (327)
T d1utca2 200 QFKMEGNAEESTLFCFAVR--------GQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISE-KHDVV 270 (327)
T ss_dssp EECCTTCSSCEEEEEEEEE--------ETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEET-TTTEE
T ss_pred EEEcCCCCCCceEEEEEEC--------CCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeec-cCCEE
Confidence 1111111122222222211 12 3689999885421 1111211 123466788888 67788
Q ss_pred EEEeCCCcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEE
Q 001319 862 AIGTEDSTIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCV 914 (1101)
Q Consensus 862 a~g~~dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~l 914 (1101)
..-+.-|.|++||+.++.++..-+--...|...+-..+..=++....+|.|..
T Consensus 271 yviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~a~~~~~~Gi~~VNr~GqVl~ 323 (327)
T d1utca2 271 FLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPHEATAGIIGVNRKGQVLS 323 (327)
T ss_dssp EEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEEETTTTEEEEEETTSEEEE
T ss_pred EEEecCcEEEEEEcccccEEEEeecCCCceEEeccCCCCceEEEECCCCeEEE
Confidence 89999999999999999998776666677776665555555666667776653
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.49 E-value=0.042 Score=56.21 Aligned_cols=197 Identities=9% Similarity=0.081 Sum_probs=126.9
Q ss_pred EEEecC---CCCeEEEEc--CCeEEEEECCCceEEEEeeCC-CCCeeEEEEecC-CCCEEEEEeCCC-------------
Q 001319 809 CIALSK---NDSYVMSAT--GGKISLFNMMTFKVMTTFMSP-PPASTFLAFHPQ-DNNIIAIGTEDS------------- 868 (1101)
Q Consensus 809 ~~~~s~---dg~~la~~~--dg~i~vwd~~~~~~~~~~~~~-~~~i~~l~~s~~-~~~~la~g~~dg------------- 868 (1101)
.+.+.. ||+++.+.. +++|.+.|+.+.++...+... ...+..+...+. ...+++.++++.
T Consensus 89 ~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 89 HMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred cccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 455544 899998887 688999999999987755443 344666665431 456777766532
Q ss_pred -----cEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCC---------------------------------
Q 001319 869 -----TIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADA--------------------------------- 910 (1101)
Q Consensus 869 -----~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg--------------------------------- 910 (1101)
.+.++|..+.+....+.. .+....+++++||+++++.+.+.
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V-~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk 247 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV-SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGD 247 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTC
T ss_pred hhcceEEEEEecCCceEEEEeee-CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCC
Confidence 356788888877766543 24567899999999999876431
Q ss_pred -----cEEEEECCCCcc-ccceEEeecCCCCCCCcceEEEcCCCCEEEEEe--CCeEEEEEcCCceeee--------Eec
Q 001319 911 -----QLCVWSIDTWEK-RKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH--ETQLAIYDASKMERIR--------QWT 974 (1101)
Q Consensus 911 -----~v~lwd~~~~~~-~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~--d~~i~v~d~~~~~~~~--------~~~ 974 (1101)
.+.+-|...... .....+... .....+.++|||++++++. +..+.|+|+++..... ...
T Consensus 248 ~~eingV~VVD~~~~~~~~v~~yIPVp-----KsPHGV~vSPDGKyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~~~ 322 (459)
T d1fwxa2 248 YQELNGVKVVDGRKEASSLFTRYIPIA-----NNPHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVV 322 (459)
T ss_dssp SEEETTEEEEECSGG--CSSEEEEEEE-----SSCCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGGEE
T ss_pred cEEeCCceeecccccCCcceeEEEecC-----CCCCceEECCCCCEEEEeCCcCCcEEEEEehhhhhhhcccCCccccEE
Confidence 233334332110 111112211 3456789999999999976 8999999987432210 000
Q ss_pred cCCCCCCCEEEEEEccCCCEEEEEeCCCcEEEEeCCC
Q 001319 975 PQDALSAPISCAVYSCNSQLVFATFCDGNIGVFDADT 1011 (1101)
Q Consensus 975 ~~~~h~~~v~~v~~s~dg~~l~s~~~dg~i~vwd~~~ 1011 (1101)
......-.-..-+|+.+|.-..|-.-|..|.-|++..
T Consensus 323 ~e~elglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 323 AEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp ECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred eecccCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 1011144556778988886555667899999999854
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=97.43 E-value=0.047 Score=60.60 Aligned_cols=81 Identities=12% Similarity=0.142 Sum_probs=54.1
Q ss_pred CeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeeccCCCC-eeEEEEcCCCC-E
Q 001319 825 GKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLKGHQKR-ITGLAFSTSLN-I 902 (1101)
Q Consensus 825 g~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~~h~~~-V~~l~~s~d~~-~ 902 (1101)
|.|.-||+.+++.+....... ....-.++- .+.++++|+.||.++.+|..+|+.+-+++-..+. -.-+.+..||+ +
T Consensus 438 G~l~A~D~~tGk~~W~~~~~~-~~~gg~l~T-agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqy 515 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPYPT-HWNGGTLST-AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQY 515 (560)
T ss_dssp EEEEEEETTTTEEEEEEEESS-SCCCCEEEE-TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred cceEEEeCCCCeEeeeccCCC-CCCCceeEE-CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence 568889999999988776422 222222333 4568889999999999999999999877533221 11255566786 5
Q ss_pred EEEEe
Q 001319 903 LVSSG 907 (1101)
Q Consensus 903 l~s~s 907 (1101)
++..+
T Consensus 516 v~v~a 520 (560)
T d1kv9a2 516 VAIMA 520 (560)
T ss_dssp EEEEE
T ss_pred EEEEe
Confidence 55433
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=97.37 E-value=0.17 Score=56.20 Aligned_cols=80 Identities=9% Similarity=0.010 Sum_probs=52.6
Q ss_pred CCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEe-CCeEEEEEcCCceeeeEeccCCC-CCCCEEEE
Q 001319 909 DAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVH-ETQLAIYDASKMERIRQWTPQDA-LSAPISCA 986 (1101)
Q Consensus 909 Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~-d~~i~v~d~~~~~~~~~~~~~~~-h~~~v~~v 986 (1101)
.|.|.-+|+.+|+.+-..... .+...-..+..+.++.+++ |+.++.||.++|+.+-.+..... +..+ +
T Consensus 465 ~G~l~AiD~~TG~i~W~~~~~-------~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ 534 (582)
T d1flga_ 465 VGSLRAMDPVSGKVVWEHKEH-------LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPP---I 534 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES-------SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---E
T ss_pred CCeEEEEcCCCCcEEeecCCC-------CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccC---E
Confidence 367888999998876544432 1222222345566666665 99999999999999988877542 2333 4
Q ss_pred EEccCCC-EEEEE
Q 001319 987 VYSCNSQ-LVFAT 998 (1101)
Q Consensus 987 ~~s~dg~-~l~s~ 998 (1101)
.|..||+ ||++.
T Consensus 535 ty~~~G~qYv~i~ 547 (582)
T d1flga_ 535 TWEQDGEQYLGVT 547 (582)
T ss_dssp EEEETTEEEEEEE
T ss_pred EEEECCEEEEEEE
Confidence 5667885 56543
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.05 E-value=0.032 Score=59.82 Aligned_cols=247 Identities=9% Similarity=0.017 Sum_probs=122.8
Q ss_pred CCccEEEEEEccCCCEEEEEE-CC----CeEEEEeecCCcccccceeeecccCcEEEEEEecCCCceEEEEec-------
Q 001319 405 VPISVSRVAWSPDGNYVGVAF-TK----HLIQLYSYAGSNDLRQHSQIDAHVGAVNDLAFAYPNKLLCVVTCG------- 472 (1101)
Q Consensus 405 h~~~v~~~~~spdg~~las~~-~d----~~i~vwd~~~~~~~~~~~~l~~h~~~V~~l~~s~d~~~~~l~s~~------- 472 (1101)
+.-.+..+++||||+++|.+- .+ ..|+++|+.+|+.+.. .+.. .....++|++|++. ++.+.-
T Consensus 123 ~~~~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~--~i~~--~~~~~~~W~~D~~~-~~Y~~~~~~~~~~ 197 (430)
T d1qfma1 123 GTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPD--VLER--VKFSCMAWTHDGKG-MFYNAYPQQDGKS 197 (430)
T ss_dssp SCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEE--EEEE--ECSCCEEECTTSSE-EEEEECCCCSSCC
T ss_pred ccceecceEecCCCCEEEEEeccccCchheeEEeccCcceeccc--cccc--ccccceEEcCCCCE-EEEEEeccccCcc
Confidence 444556778999999999652 22 3699999999986542 1211 11256899999995 233321
Q ss_pred --------CCceEEEEE-cCCce--eEEeecCCc--CeEEEecccCCCccEEEEec---cCCeEEEE--ecCCCCee---
Q 001319 473 --------DDKLIKVWE-LSGRK--LFNFEGHEA--PVYSICPHHKENIQFIFSTA---IDGKIKAW--LYDTMGSR--- 531 (1101)
Q Consensus 473 --------~d~~v~iwd-~~~~~--~~~~~~h~~--~v~~v~~~~~~~~~~l~s~~---~d~~i~~w--d~~~~~~~--- 531 (1101)
....|..|. -+... ...+..... .+..+..+. ++++++... .+....+| ++......
T Consensus 198 ~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~--d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~ 275 (430)
T d1qfma1 198 DGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSD--DGRYVLLSIREGCDPVNRLWYCDLQQESNGITG 275 (430)
T ss_dssp SSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECT--TSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCS
T ss_pred cccccccCCcceEEEEECCCCccccccccccccCCceEEeeeccC--CcceeeEEeeccCCccEEEEEeeCCCccccccc
Confidence 112466666 33221 223333332 344454444 666765432 23344455 43322111
Q ss_pred -----eeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCee--EEEecccCCcceEEEEEeCCCCEEEEEe
Q 001319 532 -----VDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTI--KRTYAGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 532 -----~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~--~~~~~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
........... .... +|..+..-+.....++.|...++..... ...+-.+....+..-.+...+++|+...
T Consensus 276 ~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~lvl~~ 353 (430)
T d1qfma1 276 ILKWVKLIDNFEGEYD-YVTN-EGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNFLVLCY 353 (430)
T ss_dssp SCCCEEEECSSSSCEE-EEEE-ETTEEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTEEEEEE
T ss_pred ccceeEeecccccceE-EEec-CCceeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCEEEEEE
Confidence 11111111122 2222 3333333322223356777777765432 1222222222343334444456776654
Q ss_pred -CC--CcEEEEECCCCeeeEeeccCCCCCCCCeeEEecCCCEEEEEEcC----CcEEEEEccccc
Q 001319 605 -ED--SQIKFWDMDNVNILTSTDAEGGLPNLPRLRFSKEGNLLAVTTAD----NGFKILANAIGL 662 (1101)
Q Consensus 605 -~d--g~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~~g~~l~~~~~d----~~i~iwd~~~~~ 662 (1101)
.+ ..|++++..++.......... ..|..+...++...+.....+ .++.-+|+.++.
T Consensus 354 ~~~~~~~l~v~~~~~~~~~~~~~~~~--~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~ 416 (430)
T d1qfma1 354 LHDVKNTLQLHDLATGALLKIFPLEV--GSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (430)
T ss_dssp EETTEEEEEEEETTTCCEEEEECCCS--SEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred EcCCEeEEEEEECCCCcEEEecCCCC--ceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCC
Confidence 44 358889998887655543322 234444444555544443322 567778887763
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=96.93 E-value=0.16 Score=51.41 Aligned_cols=267 Identities=9% Similarity=0.139 Sum_probs=142.5
Q ss_pred CCCeEEEEc-CCeEEEEECCCceEEEEeeCCCCCeeEEEEec----C-CCCEEEEEe-C-C--CcEEEEEeec-ceEEEe
Q 001319 815 NDSYVMSAT-GGKISLFNMMTFKVMTTFMSPPPASTFLAFHP----Q-DNNIIAIGT-E-D--STIHIYNVRV-DEVKSK 883 (1101)
Q Consensus 815 dg~~la~~~-dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~----~-~~~~la~g~-~-d--g~v~iwd~~~-~~~~~~ 883 (1101)
+..+++... .+-|++||++ |+.+..+. .+.+..+..-. . ...-+++++ . + .+|.+|.+.. ...+..
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~ 115 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS 115 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccc
Confidence 334444444 4569999985 77777764 35566555432 0 222344554 2 2 3688888863 223333
Q ss_pred eccC-------CCCeeEEEE--cCC-CC-EEEEEeCCCcEEEEECCCCcc--ccceEEeecCCCCCCCcceEEEcCCCCE
Q 001319 884 LKGH-------QKRITGLAF--STS-LN-ILVSSGADAQLCVWSIDTWEK--RKSVTIHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 884 ~~~h-------~~~V~~l~~--s~d-~~-~l~s~s~Dg~v~lwd~~~~~~--~~~~~~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
+... ...+..+|+ ++. |. +++....+|.+..|.+..... .....++.... ...+..|.++++...
T Consensus 116 ~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~--~~q~EGCVvDde~~~ 193 (353)
T d1h6la_ 116 ITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKM--NSQTEGMAADDEYGS 193 (353)
T ss_dssp CSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEEC--SSCEEEEEEETTTTE
T ss_pred ccccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCC--CCccceEEEeCCCCc
Confidence 3221 124778887 554 43 566777889999887743221 11222222211 257889999999999
Q ss_pred EEEEe-CCeEEEEEcC--C---ceeeeEeccCCCCCCCEEEEEE--ccCCC-EEE-EEeCCCcEEEEeCCCC-ceeEeeC
Q 001319 951 MLVVH-ETQLAIYDAS--K---MERIRQWTPQDALSAPISCAVY--SCNSQ-LVF-ATFCDGNIGVFDADTL-RLRCYIA 1019 (1101)
Q Consensus 951 l~~~~-d~~i~v~d~~--~---~~~~~~~~~~~~h~~~v~~v~~--s~dg~-~l~-s~~~dg~i~vwd~~~~-~~~~~~~ 1019 (1101)
|.++. +..+..++.+ . ...+..... ......+..|++ ..+++ ||+ +.-.+++..|||..+. +.+..+.
T Consensus 194 LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g-~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~~~~~g~F~ 272 (353)
T d1h6la_ 194 LYIAEEDEAIWKFSAEPDGGSNGTVIDRADG-RHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQNKYVADFQ 272 (353)
T ss_dssp EEEEETTTEEEEEESSTTSCSCCEEEEECSS-SSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTTCCEEEEEE
T ss_pred EEEecCccceEEEEeccCCCccceeeecccC-ccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCCccccceEE
Confidence 99986 5556556553 1 222222222 112556666664 33433 544 4446888999999874 6665554
Q ss_pred CCCcCCCcccCCCCccceEEEEEecC-CCCEEEEEECCC---------eEEEEeCCCCCCccccCCCCCCCCCCcccc
Q 001319 1020 PSTYLSPSVLNGSQTVYPLVVAAHPL-EPNQFAIGLTDG---------SVKVMEPSESEGKWGVSPPVDNGILNSRTT 1087 (1101)
Q Consensus 1020 ~~~~~~~~~~~h~~~~~~~~l~~~p~-d~~~l~s~~~Dg---------~v~iWd~~~~~~~~~~~~~~~~~~~~~~~~ 1087 (1101)
-......--..+.+.+.+++..+.+. -..+||+-..++ +.++-+...-...+.+.+..+.+.-+|+..
T Consensus 273 i~~~~~iDgvs~TDGi~v~~~~lg~~fp~Gl~VvqDg~N~~~~~~~~qNFK~v~w~~I~~~l~l~~~~~~~~~pr~~~ 350 (353)
T d1h6la_ 273 ITDGPETDGTSDTDGIDVLGFGLGPEYPFGLFVAQNGENIDHGQKANQNFKMVPWERIADKIGFHPQVNKQVDPRKMT 350 (353)
T ss_dssp ECCCSSSCCCCSCCCEEEECSCCSTTCTTCEEEEEESSCEETTEECCCEEEEEETHHHHGGGTCCCCTTSCCCTTSCC
T ss_pred EecCCCcCccccCchheEEcccCCCCCCCeeEEEEcCCcccCCcccCCceEEeeHHHHHHhhCCCcccccccCCCCCC
Confidence 21111110023666676666655431 133555443322 255555543335555555555554455443
|
| >d1uuja_ a.221.1.1 (A:) Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain superfamily: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain family: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain domain: Lissencephaly-1 protein (Lis-1, PAF-AH alpha) N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.52 E-value=0.00083 Score=49.45 Aligned_cols=54 Identities=19% Similarity=0.279 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHhhcCHHHHHHHHHHhcCCCCC--HHHHHHHHhccCHHHHHHHHc
Q 001319 5 SRELVFLILQFLEEEKFKESVHKLEKESGFFFN--MKYFEEKVQAGDWDEVEKYLS 58 (1101)
Q Consensus 5 ~~e~~~li~q~L~~~g~~~s~~~L~~Esg~~~~--~~~~~~~i~~g~w~~~~~~l~ 58 (1101)
++|+.+-|++||...||.+++.+|.+|+.+.++ ...-..-+++-+|..++.+-.
T Consensus 7 ~eeL~kaI~~Yl~~~~~~~~~~~l~~e~~l~~~~~~~~ky~glLEKKWtSViRLQk 62 (76)
T d1uuja_ 7 RDELNRAIADYLRSNGYEEAYSVFKKEAELDMNEELDKKYAGLLEKKWTSVIRLQK 62 (76)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHTTCCCCHHHHHHHTTHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHCCcHHHHHHHHHHHCCCCChhhhhhhcCcchhHHHHHHHHHH
Confidence 689999999999999999999999999998875 455556677777765555443
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=94.84 E-value=1.6 Score=43.61 Aligned_cols=188 Identities=13% Similarity=0.161 Sum_probs=108.4
Q ss_pred EEEEecCCceEEEEEcCCceeEEeecCCcCeEEEeccc----CCCccEEEEecc--C--CeEEEEecCCCCe-eeeccCC
Q 001319 467 CVVTCGDDKLIKVWELSGRKLFNFEGHEAPVYSICPHH----KENIQFIFSTAI--D--GKIKAWLYDTMGS-RVDYDAP 537 (1101)
Q Consensus 467 ~l~s~~~d~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~----~~~~~~l~s~~~--d--~~i~~wd~~~~~~-~~~~~~~ 537 (1101)
+++.....+-|.+||.+|+.+..+. .+.++.|..-. ......++.++. + .+|.+|.+..... ...+...
T Consensus 42 lI~gTdK~~Gl~vYdL~G~~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~~~~ 119 (353)
T d1h6la_ 42 KLITTNKKSGLAVYSLEGKMLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSITDP 119 (353)
T ss_dssp EEEEEETTSCCEEEETTCCEEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEECSCS
T ss_pred EEEEEcCcCCEEEEcCCCcEEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCccccccccccc
Confidence 5666667777999999999998875 35566655321 112223444442 2 3688888764332 2222211
Q ss_pred -------CCceEEEEE--ccC-CCEEEEeecCCCCCceEEEEeC---CCC----eeEEEecccCCcceEEEEEeCCCCEE
Q 001319 538 -------GHWCTTMLY--SAD-GSRLFSCGTSKDGDSFLVEWNE---SEG----TIKRTYAGFRKKSNGVVQFDTTQNHF 600 (1101)
Q Consensus 538 -------~~~v~~~~~--s~d-~~~l~~~~~~~~~~~~i~iwd~---~~~----~~~~~~~~~~~~~v~~~~~~~~~~~l 600 (1101)
...+..+|+ ++. |...+.... .++.+..|.+ ..+ +.++.+.... .+..+.+....+.|
T Consensus 120 ~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~---k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~--q~EGCVvDde~~~L 194 (353)
T d1h6la_ 120 NRPIASAIDEVYGFSLYHSQKTGKYYAMVTG---KEGEFEQYELNADKNGYISGKKVRAFKMNS--QTEGMAADDEYGSL 194 (353)
T ss_dssp SSCEECSSSSCCCEEEEECTTTCCEEEEEEC---SSSEEEEEEEEECTTSSEEEEEEEEEECSS--CEEEEEEETTTTEE
T ss_pred ccccccccCcceEEEEEecCCCCeEEEEEEc---CCceEEEEEEEcCCCCceeeEeeeccCCCC--ccceEEEeCCCCcE
Confidence 123566776 654 555444432 3677777755 333 4555665433 57778999999999
Q ss_pred EEEeCCCcEEEEECCC-----CeeeEeeccCCCCCCCCeeEEec--C--CCEEEEEEcCCcEEEEEcccc
Q 001319 601 LAVGEDSQIKFWDMDN-----VNILTSTDAEGGLPNLPRLRFSK--E--GNLLAVTTADNGFKILANAIG 661 (1101)
Q Consensus 601 ~~~~~dg~i~iwd~~~-----~~~~~~~~~~~~~~~v~~v~~s~--~--g~~l~~~~~d~~i~iwd~~~~ 661 (1101)
+.+-++..|..++... +..+.......-...+..++.-. + |-+|++...+++..+||..+.
T Consensus 195 yisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f~vydr~~~ 264 (353)
T d1h6la_ 195 YIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSYAIYERQGQ 264 (353)
T ss_dssp EEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEEEEEESSTT
T ss_pred EEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeEEEEecCCC
Confidence 9999887776666542 22232222211223456666533 3 334444445788999997654
|
| >d2nxpa1 d.379.1.1 (A:195-343) TAF5 subunit of TFIID {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.64 E-value=0.043 Score=47.60 Aligned_cols=78 Identities=13% Similarity=0.262 Sum_probs=61.1
Q ss_pred HHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHHH
Q 001319 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1101)
Q Consensus 72 ~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1101)
++|+++-+.||||+..|...+|..|+++.-.-+.....+++++|..+....+...++....+.. .+.+-..|+
T Consensus 45 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~~~~~~~~~~I~~L~~i~~~~~l~~n~~~~~~r~nKy~I~ms~~s~~lLl 124 (149)
T d2nxpa1 45 LFYPLFVHMYLELVYNQHENEAKSFFEKFHGDQECYYQDDLRVLSSLTKKEHMKGNETMLDFRTSKFVLRISRDSYQLLK 124 (149)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGSCGGGHHHHHHHHTCCSHHHHTTCGGGGGGCGGGSEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHhchhhhHHHHHHHHHHHcCCCHHHHhhhHHHHHHhCCCeEEEecHHHHHHHH
Confidence 9999999999999999999999999997665565667889999999888877776666555554 234445666
Q ss_pred HHHHh
Q 001319 145 IELKK 149 (1101)
Q Consensus 145 ~~l~~ 149 (1101)
..|++
T Consensus 125 ~~L~~ 129 (149)
T d2nxpa1 125 RHLQE 129 (149)
T ss_dssp HHHTT
T ss_pred HHHHh
Confidence 66654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.20 E-value=4.9 Score=40.47 Aligned_cols=179 Identities=10% Similarity=0.081 Sum_probs=104.8
Q ss_pred CCEeEEEecCCCCeEEEEcCCeEEEEECCC-----------ceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEE
Q 001319 805 EAVPCIALSKNDSYVMSATGGKISLFNMMT-----------FKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIY 873 (1101)
Q Consensus 805 ~~v~~~~~s~dg~~la~~~dg~i~vwd~~~-----------~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iw 873 (1101)
....-+++++...++++|+...+.|..+.. ........ -..|..++|+. + .|++. .++.+..+
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~l~V~~t~~l~~~~~~~~~~~~~~~~~~--ip~v~~vafs~-d--~l~v~-~~~~l~~~ 110 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSKAVVGELQLLRDHITSDSTPLTFKWEKE--IPDVIFVCFHG-D--QVLVS-TRNALYSL 110 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTEEEEEEHHHHHHHHHSSSCCCCCSEEEE--CTTEEEEEEET-T--EEEEE-ESSEEEEE
T ss_pred cccceEEEeCCCCEEEEECCCEEEEEEHHHHHHHhhccCCCCcceeccC--CCCeEEEEeeC-C--EEEEE-eCCCEEEE
Confidence 445678888887788888766777876421 11111121 23688999975 3 45444 45667777
Q ss_pred EeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCcEEEEECCCCccccceE---EeecCCCCCCCcceEEEcCCCCE
Q 001319 874 NVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQLCVWSIDTWEKRKSVT---IHIPAGKTPTGDTRVQFNADQVR 950 (1101)
Q Consensus 874 d~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lwd~~~~~~~~~~~---~~~~~~~~~~~v~~~~~s~d~~~ 950 (1101)
+..+-........-..++..+.++|. .++....++.+.++++..++...... .... ...+.+++|++.|+.
T Consensus 111 ~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~----~~~~~~v~ws~kgkq 184 (381)
T d1xipa_ 111 DLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDV----TNSQLAVLLKDRSFQ 184 (381)
T ss_dssp ESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEESEEEEEE----CSSEEEEEETTSCEE
T ss_pred EeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccCCcceEEe----cCCceEEEEeCCcEE
Confidence 76653333333334566888888775 56667778999999998876432210 0011 145777888888887
Q ss_pred EEEEeCCeEEEE-EcCCceeeeEeccCCCCCCCEEEEEEccCCCEEEEE
Q 001319 951 MLVVHETQLAIY-DASKMERIRQWTPQDALSAPISCAVYSCNSQLVFAT 998 (1101)
Q Consensus 951 l~~~~d~~i~v~-d~~~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~ 998 (1101)
++++.++...+. ++.... .+.........|.+|.|-.+..++++-
T Consensus 185 ~v~~~g~~~q~k~~i~~~~---~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 185 SFAWRNGEMEKQFEFSLPS---ELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp EEEEETTEEEEEEEECCCH---HHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred EEEeCCCceeeccCCCCcc---ccCCCcCCCcceeEEEEecCceEEEEE
Confidence 777654433322 111111 111111124578899998777776653
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=93.06 E-value=4.9 Score=40.07 Aligned_cols=188 Identities=10% Similarity=0.020 Sum_probs=100.7
Q ss_pred EEEEEccCCCEEEEEEC------------CCeEEEEeecCCcccccceeeeccc-----CcEEEEEE--ecCCCceEEEE
Q 001319 410 SRVAWSPDGNYVGVAFT------------KHLIQLYSYAGSNDLRQHSQIDAHV-----GAVNDLAF--AYPNKLLCVVT 470 (1101)
Q Consensus 410 ~~~~~spdg~~las~~~------------d~~i~vwd~~~~~~~~~~~~l~~h~-----~~V~~l~~--s~d~~~~~l~s 470 (1101)
-.++..|||..+++++. .|.|.++|+++.+.......+.+.. -.-..+.. .+||+. .|++
T Consensus 38 EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~-~L~v 116 (340)
T d1v04a_ 38 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTV-YLLV 116 (340)
T ss_dssp CEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCE-EEEE
T ss_pred ceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcE-EEEE
Confidence 35788899988776642 4889999998765432221222111 11233333 456664 3444
Q ss_pred e---cCCceEEEEE--cCCceeE---Eeec-CCcCeEEEecccCCCccEEEEecc---------------CCeEEEEecC
Q 001319 471 C---GDDKLIKVWE--LSGRKLF---NFEG-HEAPVYSICPHHKENIQFIFSTAI---------------DGKIKAWLYD 526 (1101)
Q Consensus 471 ~---~~d~~v~iwd--~~~~~~~---~~~~-h~~~v~~v~~~~~~~~~~l~s~~~---------------d~~i~~wd~~ 526 (1101)
. ....+|.+|+ ..+..+. ++.. .....+.+++.. ++.+++|-.. -+...+|..+
T Consensus 117 vnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~--~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~ 194 (340)
T d1v04a_ 117 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVG--PEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYS 194 (340)
T ss_dssp EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEE--TTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEEC
T ss_pred EeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEec--CCCEEEecCccCcChhhhhhhHhhcCCceeEEEEc
Confidence 3 3456888988 3443332 2221 123467777654 5567776311 1233445444
Q ss_pred CCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEEe-cccCCcceEEEEEeCCCCEEEEEe
Q 001319 527 TMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRTY-AGFRKKSNGVVQFDTTQNHFLAVG 604 (1101)
Q Consensus 527 ~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~l~~~~ 604 (1101)
..+..... ......+.++++||+++|+++.. ..+.|+.|++......... .-.-.....-+.+.+.+..+.+++
T Consensus 195 ~~~~~~~~-~~l~~pNGI~~s~d~~~lyVa~t---~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lwva~ 269 (340)
T d1v04a_ 195 PNDVRVVA-EGFDFANGINISPDGKYVYIAEL---LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLWVGC 269 (340)
T ss_dssp SSCEEEEE-EEESSEEEEEECTTSSEEEEEEG---GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEEEEE
T ss_pred CCceEEEc-CCCCccceeEECCCCCEEEEEeC---CCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEEEEE
Confidence 44433322 22345789999999999988765 4677988887643322111 111112344577776444444443
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.32 E-value=3.4 Score=40.01 Aligned_cols=65 Identities=22% Similarity=0.169 Sum_probs=36.8
Q ss_pred CCCEEEEEeCC-----CcEEEEEeecceEEEeeccCCCCeeEEEEcCCCCEEEEEeCCCc-----EEEEECCCCc
Q 001319 857 DNNIIAIGTED-----STIHIYNVRVDEVKSKLKGHQKRITGLAFSTSLNILVSSGADAQ-----LCVWSIDTWE 921 (1101)
Q Consensus 857 ~~~~la~g~~d-----g~v~iwd~~~~~~~~~~~~h~~~V~~l~~s~d~~~l~s~s~Dg~-----v~lwd~~~~~ 921 (1101)
++.+++.|+.+ ....++|..+.+....-.....+...-+...+++.++.|+.++. |.+||+.+.+
T Consensus 195 ~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~p~~r~~~~~~~~~~~l~v~GG~~~~~~~~~v~~yd~~~~~ 269 (288)
T d1zgka1 195 HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITVHQGRIYVLGGYDGHTFLDSVECYDPDTDT 269 (288)
T ss_dssp TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eeeEEEecCccccccccceeeeeecceeeecccCccCcccceEEEEECCEEEEEecCCCCeecceEEEEECCCCE
Confidence 45666666544 35667777665543322222222222222336788888876643 7889998755
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.20 E-value=1.6 Score=42.67 Aligned_cols=223 Identities=13% Similarity=0.037 Sum_probs=102.3
Q ss_pred eEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeC---------CCcEEEEEeecceEEEeeccCCCCeeEEEE
Q 001319 826 KISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTE---------DSTIHIYNVRVDEVKSKLKGHQKRITGLAF 896 (1101)
Q Consensus 826 ~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~---------dg~v~iwd~~~~~~~~~~~~h~~~V~~l~~ 896 (1101)
.+.+||+.+++-...-..+...-...+..- ++++++.|+. -..+.+||..+.+....-......-...+.
T Consensus 20 ~~~~yd~~t~~W~~~~~~p~~R~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~w~~~~~~p~~r~~~~~~ 98 (288)
T d1zgka1 20 YLEAYNPSNGTWLRLADLQVPRSGLAGCVV-GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVG 98 (288)
T ss_dssp CEEEEETTTTEEEECCCCSSCCBSCEEEEE-TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEE
T ss_pred eEEEEECCCCeEEECCCCCCccceeEEEEE-CCEEEEEeCcccCCCCccccchhhhcccccccccccccccceecceecc
Confidence 488999887653332111111111122222 5667777653 136778887765443221111111111122
Q ss_pred cCCCCEEEEEeCCCc-----EEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE-e-----CCeEEEEEcC
Q 001319 897 STSLNILVSSGADAQ-----LCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV-H-----ETQLAIYDAS 965 (1101)
Q Consensus 897 s~d~~~l~s~s~Dg~-----v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~-~-----d~~i~v~d~~ 965 (1101)
..+++.++.++.++. +..++..+...... ........-..+... ++..++.+ . ...+..||..
T Consensus 99 ~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~ 172 (288)
T d1zgka1 99 VIDGHIYAVGGSHGCIHHNSVERYEPERDEWHLV-----APMLTRRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPE 172 (288)
T ss_dssp EETTEEEEECCEETTEECCCEEEEETTTTEEEEC-----CCCSSCCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETT
T ss_pred ccceeeEEecceecccccceeeeeccccCccccc-----cccccccccceeeee-eecceEecCcccccccceEEEeecc
Confidence 235666666655444 44466665432111 111110111222222 34444443 2 2457888887
Q ss_pred CceeeeEeccCCCCCCCEEEEEEccCCCEEEEEeCC-----CcEEEEeCCCCceeEeeCCCCcCCCcccCCCCccceEEE
Q 001319 966 KMERIRQWTPQDALSAPISCAVYSCNSQLVFATFCD-----GNIGVFDADTLRLRCYIAPSTYLSPSVLNGSQTVYPLVV 1040 (1101)
Q Consensus 966 ~~~~~~~~~~~~~h~~~v~~v~~s~dg~~l~s~~~d-----g~i~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~l 1040 (1101)
+.+....-.... .....++. ..+++.++.|+.+ ....++|..+.+....... +.....| ++
T Consensus 173 ~~~~~~~~~~~~--~~~~~~~~-~~~~~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~~----p~~r~~~-------~~ 238 (288)
T d1zgka1 173 RNEWRMITAMNT--IRSGAGVC-VLHNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPM----KHRRSAL-------GI 238 (288)
T ss_dssp TTEEEECCCCSS--CCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCC----SSCCBSC-------EE
T ss_pred cccccccccccc--cccccccc-ceeeeEEEecCccccccccceeeeeecceeeecccCc----cCcccce-------EE
Confidence 765443222111 11111222 2245666666544 3567788877655432111 1111111 12
Q ss_pred EEecCCCCEEEEEECCCe-----EEEEeCCCCCCcccc
Q 001319 1041 AAHPLEPNQFAIGLTDGS-----VKVMEPSESEGKWGV 1073 (1101)
Q Consensus 1041 ~~~p~d~~~l~s~~~Dg~-----v~iWd~~~~~~~~~~ 1073 (1101)
+.. ++.+++.|+.++. |.+||+.+.+ |..
T Consensus 239 ~~~--~~~l~v~GG~~~~~~~~~v~~yd~~~~~--W~~ 272 (288)
T d1zgka1 239 TVH--QGRIYVLGGYDGHTFLDSVECYDPDTDT--WSE 272 (288)
T ss_dssp EEE--TTEEEEECCBCSSCBCCEEEEEETTTTE--EEE
T ss_pred EEE--CCEEEEEecCCCCeecceEEEEECCCCE--EEE
Confidence 222 5788888887654 7789988865 544
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=92.16 E-value=6.4 Score=39.18 Aligned_cols=198 Identities=14% Similarity=0.126 Sum_probs=104.0
Q ss_pred EEEEEEecCCceEEEEEe-----------ccCcEEEEecCCCceeccccceeecccccCccccccccccCCccEEEEEEc
Q 001319 347 VISMDFHPSHQTLLLVGS-----------SNGEITLWELAMRDRLVSKPFKIWDMAACSLPFQASIFKDVPISVSRVAWS 415 (1101)
Q Consensus 347 V~~v~fspdg~~llasg~-----------~d~~i~iwd~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~h~~~v~~~~~s 415 (1101)
-..|+..|||..+++||. ..|.|.++|+.+.+... ..+.+ . ........+..|. + ++.-.
T Consensus 37 ~EDi~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~-~~l~~---~--~~~~~~~~f~PhG--i-~l~~~ 107 (340)
T d1v04a_ 37 SEDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-SELEI---I--GNTLDISSFNPHG--I-STFID 107 (340)
T ss_dssp CCEEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCE-EECEE---E--CSSSCGGGCCEEE--E-EEEEC
T ss_pred cceEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcc-eEEEe---c--CCCCCCcceeccc--e-eEEEc
Confidence 346788899987666652 14788888887654322 01110 0 0000001122232 2 12224
Q ss_pred cCCC-EEEEEE---CCCeEEEEeecCCcc-cccceeee-cccCcEEEEEEecCCCceEEEEec---C------------C
Q 001319 416 PDGN-YVGVAF---TKHLIQLYSYAGSND-LRQHSQID-AHVGAVNDLAFAYPNKLLCVVTCG---D------------D 474 (1101)
Q Consensus 416 pdg~-~las~~---~d~~i~vwd~~~~~~-~~~~~~l~-~h~~~V~~l~~s~d~~~~~l~s~~---~------------d 474 (1101)
+||+ +|++.. ...+|.+|++..+.. +.....+. ......+++++..++. +++|-. . -
T Consensus 108 ~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~--fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 108 DDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEH--FYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp TTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTE--EEEEESCSCCSHHHHHHHHHTTC
T ss_pred CCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCC--EEEecCccCcChhhhhhhHhhcC
Confidence 5776 455543 456799999875432 22111222 2234578999999998 677721 1 1
Q ss_pred ceEEEEEcCCceeEEeecCCcCeEEEecccCCCccEEEEeccCCeEEEEecCCCCeeee--ccCCCCceEEEEEcc-CCC
Q 001319 475 KLIKVWELSGRKLFNFEGHEAPVYSICPHHKENIQFIFSTAIDGKIKAWLYDTMGSRVD--YDAPGHWCTTMLYSA-DGS 551 (1101)
Q Consensus 475 ~~v~iwd~~~~~~~~~~~h~~~v~~v~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~--~~~~~~~v~~~~~s~-d~~ 551 (1101)
++..+|..+++........-...+.|+++++.+ .++++-+..++|+.|++........ ...-....-.+.+.+ +|.
T Consensus 186 ~~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~-~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~ 264 (340)
T d1v04a_ 186 AWSFVTYYSPNDVRVVAEGFDFANGINISPDGK-YVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGD 264 (340)
T ss_dssp CCEEEEEECSSCEEEEEEEESSEEEEEECTTSS-EEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCC
T ss_pred CceeEEEEcCCceEEEcCCCCccceeEECCCCC-EEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCE
Confidence 233444422222333333334578899977432 3456667788999999875543221 111234466778875 455
Q ss_pred EEEEe
Q 001319 552 RLFSC 556 (1101)
Q Consensus 552 ~l~~~ 556 (1101)
+.+.+
T Consensus 265 lwva~ 269 (340)
T d1v04a_ 265 LWVGC 269 (340)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 55544
|
| >d2j4ba1 d.379.1.1 (A:18-148) TAF5 subunit of TFIID {Encephalitozoon cuniculi [TaxId: 6035]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Encephalitozoon cuniculi [TaxId: 6035]
Probab=92.10 E-value=0.038 Score=46.78 Aligned_cols=77 Identities=12% Similarity=0.222 Sum_probs=53.0
Q ss_pred HHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHHH
Q 001319 72 IFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIML 144 (1101)
Q Consensus 72 ~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l~ 144 (1101)
++|+++-+.||||+..|..++|..|+++.-..+. ...+++++|..+....+..+++....+.. .+.+-..|+
T Consensus 27 lLyPvFvh~yL~Lv~~~~~~~A~~F~~kf~~d~~-~~~~~i~~L~~i~~~~~l~~n~~~~~~r~nKy~i~ms~~s~~lL~ 105 (131)
T d2j4ba1 27 LLYPLFIHIYFDLIQQNKTDEAKEFFEKYRGDHY-NKSEEIKQFESIYTVQHIHENNFAYTFKNSKYHLSMGRYAFDLLI 105 (131)
T ss_dssp GHHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---CHHHHHHHTTCCSHHHHHHCHHHHHHHHSCEEEEEEHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHccchHH-HHHHHHHHHHccCCHHHHhhhHHHHHHhcCceEEEeCHHHHHHHH
Confidence 9999999999999999999999999987544442 35678888888776665554444333322 233334555
Q ss_pred HHHHh
Q 001319 145 IELKK 149 (1101)
Q Consensus 145 ~~l~~ 149 (1101)
..|++
T Consensus 106 ~fL~~ 110 (131)
T d2j4ba1 106 NFLEE 110 (131)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
| >d2j49a1 d.379.1.1 (A:149-282) TAF5 subunit of TFIID {Saccharomyces cerevisiae [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a+b) fold: Taf5 N-terminal domain-like superfamily: Taf5 N-terminal domain-like family: Taf5 N-terminal domain-like domain: TAF5 subunit of TFIID species: Saccharomyces cerevisiae [TaxId: 4932]
Probab=89.01 E-value=0.092 Score=44.46 Aligned_cols=78 Identities=18% Similarity=0.256 Sum_probs=53.7
Q ss_pred hHHHHHHHhHHHHHHccCCHHHHHHHHHhhcccccccCHHHHHHHHHhhcccCccccccccccCC-------chHHHHHH
Q 001319 71 KIFFEIRKQKYLEALDRQDKAKAVDILVNDLKVFSTFNEELFKEITQLLTLSNFRENEQLSKYGD-------TKTARGIM 143 (1101)
Q Consensus 71 ~~~~~i~~~~~lell~~~~~~~a~~~l~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~-------~~~~r~~l 143 (1101)
.++|+++-+.||||+..+. .+|..|+++.-.-+.....+++++|..+....+..+++....+.. .+.+-..|
T Consensus 28 ~lLyPvFvh~yL~Lv~~~~-~~A~~F~~~f~~~~~~~~~~~i~~L~~i~~p~~l~~n~~~~~~r~nKy~I~ms~~s~~lL 106 (134)
T d2j49a1 28 YIMYPIFIYLFLNLVAKNP-VYARRFFDRFSPDFKDFHGSEINRLFSVNSIDHIKENEVASAFQSHKYRITMSKTTLNLL 106 (134)
T ss_dssp HHHHHHHHHHHHHHHHHCH-HHHHHHHHHHGGGGHHHHHHHHHTTTTCCSHHHHHHCHHHHHHHSSCEEEEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCH-HHHHHHHHHhhHHHHHHHHHHHHHHHcCCCHHHHHhhHHHHHHHcCCeEEEEcHHHHHHH
Confidence 3999999999999999864 689999987655554455677777777776665555554443332 34444566
Q ss_pred HHHHHh
Q 001319 144 LIELKK 149 (1101)
Q Consensus 144 ~~~l~~ 149 (1101)
+..|++
T Consensus 107 l~fL~~ 112 (134)
T d2j49a1 107 LYFLNE 112 (134)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666665
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.09 E-value=14 Score=36.92 Aligned_cols=137 Identities=9% Similarity=-0.004 Sum_probs=83.2
Q ss_pred CEeEEEecCCCCeEEEEcCCeEEEEECCCceEEEEeeCCCCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEEEeec
Q 001319 806 AVPCIALSKNDSYVMSATGGKISLFNMMTFKVMTTFMSPPPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVKSKLK 885 (1101)
Q Consensus 806 ~v~~~~~s~dg~~la~~~dg~i~vwd~~~~~~~~~~~~~~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~~~~~ 885 (1101)
.|..++|+.| .++...++.+..++..+.............+..+.+.| ..++....+|.+.++++..++......
T Consensus 88 ~v~~vafs~d--~l~v~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p---~~~~l~~~~~~~~~~~l~~~~~~~~~~ 162 (381)
T d1xipa_ 88 DVIFVCFHGD--QVLVSTRNALYSLDLEELSEFRTVTSFEKPVFQLKNVN---NTLVILNSVNDLSALDLRTKSTKQLAQ 162 (381)
T ss_dssp TEEEEEEETT--EEEEEESSEEEEEESSSTTCEEEEEECSSCEEEEEECS---SEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEeeCC--EEEEEeCCCEEEEEeeccccccccccccccccceecCC---ceeEEEecCCCEEEEEeccCccccccC
Confidence 5888999754 57777778888888876544444443455678888877 356677789999999998875432211
Q ss_pred -----cCCCCeeEEEEcCCCCEEEEEeCCCcEEEE-ECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEE
Q 001319 886 -----GHQKRITGLAFSTSLNILVSSGADAQLCVW-SIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVV 954 (1101)
Q Consensus 886 -----~h~~~V~~l~~s~d~~~l~s~s~Dg~v~lw-d~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~ 954 (1101)
.-.+.+.+++|++.|+.++++..++ ..+- ++.... .+..... ....+.++.|-....++++.
T Consensus 163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~-----~~~~p~~-~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPS-----ELEELPV-EEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCH-----HHHTSCT-TTSEEEEEEESSSSEEEEEE
T ss_pred CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCcc-----ccCCCcC-CCcceeEEEEecCceEEEEE
Confidence 1135678888888888777764332 1111 111100 0010011 11457788888777777763
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=84.26 E-value=13 Score=32.90 Aligned_cols=112 Identities=11% Similarity=0.106 Sum_probs=54.8
Q ss_pred cEEEEeccCCeEEEEecCCCCeeeeccCCCCceEEEEE-ccCCCEEEEeec--CCCCCceEEEEeCCCCeeEEEecccCC
Q 001319 509 QFIFSTAIDGKIKAWLYDTMGSRVDYDAPGHWCTTMLY-SADGSRLFSCGT--SKDGDSFLVEWNESEGTIKRTYAGFRK 585 (1101)
Q Consensus 509 ~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~v~~~~~-s~d~~~l~~~~~--~~~~~~~i~iwd~~~~~~~~~~~~~~~ 585 (1101)
++++.+...|.+.++-+..++.......+ |..... .+.-.++...-. .+.....|++-++...-....+.....
T Consensus 27 ~ll~~~~seG~vni~~l~g~~~vkLtkeP---I~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~GEE~~i~spk~ 103 (313)
T d2hu7a1 27 KLLVVGFSEGSVNAYLYDGGETVKLNREP---INSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP 103 (313)
T ss_dssp EEEEEEEETTEEEEEEESSSSCEECCSSC---CSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTSTTCEEECTTSCS
T ss_pred cEEEEEeccceEEEEEEeCCEEEEEeccc---ccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCCCeeeEecCCce
Confidence 57888888999999987766554432222 221111 011112221110 011123344444442222223333221
Q ss_pred cceEEEEEeCCCCEEEEEeCCCcEEEEECCCCeeeEeec
Q 001319 586 KSNGVVQFDTTQNHFLAVGEDSQIKFWDMDNVNILTSTD 624 (1101)
Q Consensus 586 ~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~ 624 (1101)
-.+.+++.. +.+.+++|+......+|-++.|++.....
T Consensus 104 vRI~S~~yd-dk~vvF~Gased~~~LYviegGklrkL~~ 141 (313)
T d2hu7a1 104 MRILSGVDT-GEAVVFTGATEDRVALYALDGGGLRELAR 141 (313)
T ss_dssp BEEEEEEEC-SSCEEEEEECSSCEEEEEEETTEEEEEEE
T ss_pred EEEEEeeec-CceEEEecccCCceEEEEEeCCceeeecc
Confidence 123334432 34566778877888889888887655443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=84.14 E-value=12 Score=38.92 Aligned_cols=110 Identities=16% Similarity=0.142 Sum_probs=61.1
Q ss_pred CCCeeEEEEecCCCCEEEEEeCCCcEEEEEeecceEE--Eeec------cCCCCeeEEEEcCC---CCEEEEE-e-----
Q 001319 845 PPASTFLAFHPQDNNIIAIGTEDSTIHIYNVRVDEVK--SKLK------GHQKRITGLAFSTS---LNILVSS-G----- 907 (1101)
Q Consensus 845 ~~~i~~l~~s~~~~~~la~g~~dg~v~iwd~~~~~~~--~~~~------~h~~~V~~l~~s~d---~~~l~s~-s----- 907 (1101)
-...++|+|.| +++++++--..|+|++++..+++.. ..+. .-.+....|+|+|+ ..++... +
T Consensus 26 L~~P~~la~~p-dg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pdf~~n~~iYvsyt~~~~~ 104 (450)
T d1crua_ 26 LNKPHALLWGP-DNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPK 104 (450)
T ss_dssp CSSEEEEEECT-TSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTT
T ss_pred CCCceEEEEeC-CCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCCCccCCEEEEEEecCCCC
Confidence 35678999999 8888876655799999987766443 2221 11345788999986 2333332 1
Q ss_pred -CC----C--cEEEEECCCCccccce---EEeecCCCCCCCcceEEEcCCCCEEEEEe
Q 001319 908 -AD----A--QLCVWSIDTWEKRKSV---TIHIPAGKTPTGDTRVQFNADQVRMLVVH 955 (1101)
Q Consensus 908 -~D----g--~v~lwd~~~~~~~~~~---~~~~~~~~~~~~v~~~~~s~d~~~l~~~~ 955 (1101)
.+ . .|..+........... .+.............+.|.|||.+.++..
T Consensus 105 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~i~~~~p~~~~H~gg~l~fgpDG~LYvs~G 162 (450)
T d1crua_ 105 STDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIG 162 (450)
T ss_dssp C--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEEC
T ss_pred CcccccccceEEEeeecccccccccceEEEeecccccccccccceeEcCCCCEEEEec
Confidence 11 1 1333333332211111 11111111113457899999998877744
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=81.05 E-value=18 Score=32.07 Aligned_cols=153 Identities=10% Similarity=0.088 Sum_probs=84.4
Q ss_pred EEEEEEecCCCceEEEEecCCceEEEEEcCCceeEEeec--CCcCeEEE--------ecccCCCccEEEEecc-CCeEEE
Q 001319 454 VNDLAFAYPNKLLCVVTCGDDKLIKVWELSGRKLFNFEG--HEAPVYSI--------CPHHKENIQFIFSTAI-DGKIKA 522 (1101)
Q Consensus 454 V~~l~~s~d~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~--h~~~v~~v--------~~~~~~~~~~l~s~~~-d~~i~~ 522 (1101)
|.-+....|+++ .+++|+......+|-.+|..++.+.. .-+-|+.+ .+.. ++..-++++.. .|.+++
T Consensus 104 vRI~S~~yddk~-vvF~Gased~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~-g~~~sfF~adl~SG~lri 181 (313)
T d2hu7a1 104 MRILSGVDTGEA-VVFTGATEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFG-GGRVSLFTSNLSSGGLRV 181 (313)
T ss_dssp BEEEEEEECSSC-EEEEEECSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEE-TTEEEEEEEETTTEEEEE
T ss_pred EEEEEeeecCce-EEEecccCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeec-CCcceEEEEecccCCEEE
Confidence 444444556776 67777777777788855555544432 22234443 2211 11122333333 455555
Q ss_pred EecCCCCeeeeccCCCCceEEEEEccCCCEEEEeecCCCCCceEEEEeCCCCeeEEE-ecc-----cCCcceEEEEEeCC
Q 001319 523 WLYDTMGSRVDYDAPGHWCTTMLYSADGSRLFSCGTSKDGDSFLVEWNESEGTIKRT-YAG-----FRKKSNGVVQFDTT 596 (1101)
Q Consensus 523 wd~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~~~~~~~~i~iwd~~~~~~~~~-~~~-----~~~~~v~~~~~~~~ 596 (1101)
++ ...+.++....++..+. ++.-... ++....-+|+++++..+. +.. .....+.-+-+.|+
T Consensus 182 ~t-----------pkeGS~~~ay~~~gnKV-~sdyEt~-gEsywit~D~~s~~yerve~P~kd~~sy~p~~I~~~~Y~Pd 248 (313)
T d2hu7a1 182 FD-----------SGEGSFSSASISPGMKV-TAGLETA-REARLVTVDPRDGSVEDLELPSKDFSSYRPTAITWLGYLPD 248 (313)
T ss_dssp EC-----------CSSEEEEEEEECTTSCE-EEEEEES-SCEEEEEECTTTCCEEECCCSSCHHHHHCCSEEEEEEECTT
T ss_pred ec-----------CCCCcccceeEccCcee-eeccCCC-CceEEEEEecccCceeeeecCcccceeecceEEEeeeeCCC
Confidence 53 34455666667776665 4433322 233444568887765443 211 12223445668999
Q ss_pred CCEEEEEeCCCcEEEEECCCCeeeEee
Q 001319 597 QNHFLAVGEDSQIKFWDMDNVNILTST 623 (1101)
Q Consensus 597 ~~~l~~~~~dg~i~iwd~~~~~~~~~~ 623 (1101)
++.++.+-.||.-.+|. +|+.+...
T Consensus 249 d~L~iiakrdG~s~lF~--nGk~in~p 273 (313)
T d2hu7a1 249 GRLAVVARREGRSAVFI--DGERVEAP 273 (313)
T ss_dssp SCEEEEEEETTEEEEEE--TTEEECCC
T ss_pred CcEEEEEecCCchheee--cceEecCC
Confidence 99989999999999987 56665443
|
| >d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Soluble quinoprotein glucose dehydrogenase family: Soluble quinoprotein glucose dehydrogenase domain: Soluble quinoprotein glucose dehydrogenase species: Acinetobacter calcoaceticus [TaxId: 471]
Probab=80.38 E-value=35 Score=35.01 Aligned_cols=72 Identities=11% Similarity=-0.057 Sum_probs=39.9
Q ss_pred CCEEEEEeCCCcEEEEECCCCccccceEEeecCCCCCCCcceEEEcCCCCEEEEEeCCeEEEEEcCCceeeeEe
Q 001319 900 LNILVSSGADAQLCVWSIDTWEKRKSVTIHIPAGKTPTGDTRVQFNADQVRMLVVHETQLAIYDASKMERIRQW 973 (1101)
Q Consensus 900 ~~~l~s~s~Dg~v~lwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~d~~i~v~d~~~~~~~~~~ 973 (1101)
+.+|+..-.++.|....++................ ...++.+++.|||..|.+..|+.=+||.. ++..+..+
T Consensus 369 g~lfvg~l~~~~i~~v~~~~~~~~~~~~~~~~~~~-~~R~rdv~~gpDGs~lyv~~d~~G~i~r~-~~~~~~~~ 440 (450)
T d1crua_ 369 NTLLVPSLKRGVIFRIKLDPTYSTTYDDAVPMFKS-NNRYRDVIASPDGNVLYVLTDTAGNVQKD-DGSVTNTL 440 (450)
T ss_dssp TEEEEEBSSSCCEEEEEECTTSSSEEEEEEEESCC-SSCEEEEEECTTSSCEEEEECSSCCEECT-TSCEECCC
T ss_pred CCEEEEECcCCEEEEEEEcCCCceeeEEEEeccCC-CCCceEEEECCCCCEEEEEECCCCCEecC-CCceEEEe
Confidence 45566555567777777765443222221111111 15688999999998766666655556653 33334333
|