Citrus Sinensis ID: 001333

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------110

MTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM

ccccccccccccccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHcccccEEEEEEEEEccEEEEEEEEEcccEEEEEEEcccccEEEEEEcccccccccccccccccccccccccccccccccccccccccEEEEEEEEcccccccEEEEEEccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccEEccccccccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccEEEcccEEEEEEEEEccccccccccccccEEEEEcccccccccccccEEEEccccccccHHHHHHccccccEEEEEccHHHHHHHHHcccccEEEEEccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHccccccccccEEEcHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHcccccHHHHHHHHHccccccccEEEEEEEEcccccccEEEEEcccccccccEEEEEEcccccccccccccccccEEEEEcccccccccccccccccccccccEEEEEccccccEEEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEccEEEEEEccccc

cccccEEHHHHcccccEEEEEEccccccHHHHHHccccccccccccHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEccccEEEEEEEcccccEEEEEEEEcccccccccccccccccccEEEccccEccccccccccccEEEEEEEEcccccEcEEEEEEcccEEEEcccccEEEEcccccccHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHHccccHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHcccccccEEcccccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEccEEEEEEEEEccccccccccccccEEEEEEcccccccccccEEEEEccccccHHHHHEEEEccccEEEEEEccHHHHHHHHHccccEEEEEEccccEEEEEcccHHHccccccccccccccEEEEccccccEEEEHHHccHHHccccHHHHHHHHHHccccccccccEEEEHHHHHHHHHccccHHHHHHHHHHHcHccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHccHHHHHHHHHccccHHHEEEEEEEEEcccHcccEEEEEcccccccccEEEEEEEcccHHHEEccccccccEEEEEEccccEEEEEEcccccEEEEEcccEEEEEcccccccccccccccccccccccccEcccccccccccccccccHHHHHHHHHHHHHHHHHHcccccEEEEEEcccEEEEEEcccc

mtastkpvfknkeqirygvpsypcrrhdVEKWLQKnykghvktntlpssSFVALVENslgadnvisrqsyhmDHEIVVLSKIISSDYHILVAVNMKGAAILHwgiskcspgewlspppdmlpekskmVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSggswiknngenffvglhpmdpkdknfvskvdgddKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLtwnknynvkpreiSEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVgrggqgdvgqRIRDEILVIQRNngcktgmmEEWHQklhnntspddIIICEALLNYIRCGFKIDAYWQTlnchglskqklasydrpivseprfradAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKghnsvisdsfgSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGlkdlnfshppEIMFFISLLLESLClsvvnnedliyctkdwyrvsesyRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQnkvyrrptiiiasritgeeeipvGVVAVltpdmpdvlshvsirarnnkvcfatcFDQNILRNLRLKEGKAVSIRLKSTNLIISDisssnlslsssalpsiprgitfkrKIFRgkyavsvedftpdmvgakscNIKFLRervpswikiptsvaipfgafETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKmrssgmpwpgdegwnLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIhtknplsgdnsEIYTEIVKGLGetlvgaypgramsfvtkknnlkspivtcypskliglygkpsiifrsdsngedlekyagaglydsvimndpekvvldysrdpmvgdksfqTSVFSKIAETGKIIEslygypqdieGVLKDGLIYVVQARPQM

mtastkpvfknkeqirygvpsypcrRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAelterckgEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKiyssqpndrEIVRLIMAFVGrggqgdvgqriRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSkqklasydrpivseprfradakesLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGtargrakdLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSqtyqkkfqpsvKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELitlqnkvyrrPTIIiasritgeeeiPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDisssnlslsssalpsiprgitfkrkiFRGKYAvsvedftpdmvgAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTknplsgdnSEIYTEIVKGLGETLVGAYPGRAMSFvtkknnlkspiVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM

MTASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFvgrggqgdvgqrirdEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFIsllleslclsVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKstnliisdisssnlslsssalpsiPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQM

*************QIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWL************MVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDPKDKNFVSKVDGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVS**********SLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDI*************SIPRGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQ*****

**************************HDVEKW********************ALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLP***KMV*GACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFV*****************GDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVS*******AQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLK*************************************KYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSII***********K*A******SVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ*

****TKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGADNVISRQSYHMDHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDMLPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFFVGLHPMDP*********DGDDKVKWLLDEISCREKEAERSLMHRFNIAAELTERCKGEGELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRLIMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNYIRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVHSGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISS**************RGITFKRKIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARP**

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1097	2.2.26 [Sep-21-2011]
Q9STV0		1278	Alpha-glucan water dikina	yes	no	0.989	0.849	0.652	0.0
Q8LPT9		1475	Alpha-glucan water dikina	N/A	no	0.967	0.719	0.544	0.0
Q9AWA5		1464	Alpha-glucan water dikina	N/A	no	0.938	0.703	0.545	0.0
Q9SAC6		1399	Alpha-glucan water dikina	no	no	0.938	0.735	0.545	0.0
Q6ZY51		1196	Phosphoglucan, water diki	no	no	0.669	0.613	0.245	1e-40
Q2QTC2		1206	Phosphoglucan, water diki	no	no	0.658	0.598	0.238	2e-39
O29548		753	Probable phosphoenolpyruv	yes	no	0.239	0.349	0.231	3e-09
O57830		821	Probable phosphoenolpyruv	yes	no	0.150	0.200	0.259	7e-09
O27190		684	Probable phosphoenolpyruv	yes	no	0.147	0.236	0.258	1e-08
Q9V2H7		819	Probable phosphoenolpyruv	yes	no	0.150	0.201	0.254	1e-08

>sp\|Q9STV0\|GWD2_ARATH Alpha-glucan water dikinase 2 OS=Arabidopsis thaliana GN=GWD2 PE=2 SV=3	Back alignment and function desciption

 Score = 1480 bits (3831), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 720/1103 (65%), Positives = 878/1103 (79%), Gaps = 17/1103 (1%)

Query: 4    STKPVFKNK--EQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGA 61
            ST PV K +  E     + SY  R+HDV+KWLQK  +   ++ ++ SS+   L + S+G 
Sbjct: 184  STVPVEKEETSEPHHTMIQSYR-RKHDVQKWLQKYTEPINRSGSVKSSALAELSKRSVGQ 242

Query: 62   DNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDM 120
            +N++S++S+H+ ++EI VL + +  D  + +A NM G  +LHWG++K S GEWL PPPD+
Sbjct: 243  ENLVSQKSFHVRNYEITVLQRDVKGDCRLWIATNMAGPTVLHWGVAKSSAGEWLIPPPDV 302

Query: 121  LPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFF 180
            LPEKSK V GACQT FTD+++   S+Q +D+NL++  FVGIQFVIWSGG W+ NNG NF 
Sbjct: 303  LPEKSKFVHGACQTQFTDMSSREHSYQFIDINLKRGGFVGIQFVIWSGGYWVNNNGANFV 362

Query: 181  VGLHPMDPKDKNFVSKVDGDDK--VKWLLDEISCREKEAERSLMHRFNIAAELTERCKGE 238
            V L   D        K+D D+K  +KWLLDEIS REKEAERSLMHRFNIA ELTERCK E
Sbjct: 363  VNLKSADSTS----GKLDVDEKYVLKWLLDEISEREKEAERSLMHRFNIATELTERCKDE 418

Query: 239  GELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRL 298
            GE G I IMVWMRFMA RHLTWNKNYNVKPREISEA +RFTNL++KIY  QPN REIVRL
Sbjct: 419  GEGGCIGIMVWMRFMATRHLTWNKNYNVKPREISEALERFTNLMEKIYLQQPNKREIVRL 478

Query: 299  IMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNY 358
             MA VGRGGQGDVGQRIRDEILVIQRNN CK+GMMEEWHQKLHNN+S DD+IICEALLNY
Sbjct: 479  TMALVGRGGQGDVGQRIRDEILVIQRNNHCKSGMMEEWHQKLHNNSSADDVIICEALLNY 538

Query: 359  IRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVH 418
            +R  F+IDAYWQTL  +GL+K++LASYDRPIVSEPRFR+D+KE L RDLTMYLKTLKAVH
Sbjct: 539  VRSDFRIDAYWQTLQTNGLTKERLASYDRPIVSEPRFRSDSKEGLIRDLTMYLKTLKAVH 598

Query: 419  SGADLESAIETCY---KGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDS 475
            SGADLESAI+T     KGH+     +   LS KL++ L  +K  + +E+   L+EKLVD+
Sbjct: 599  SGADLESAIDTFLSPSKGHHVF---AVNGLSPKLQDLLNLVKRLVREENTEPLIEKLVDA 655

Query: 476  RIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLC 535
            RI+LHP L   R RAKDLLFLDI+L S  KTT+E+ L  LNF++PPEI++ I ++LE+LC
Sbjct: 656  RIQLHPALRAPRTRAKDLLFLDIALESCFKTTIEKRLISLNFNNPPEIIYVICVVLENLC 715

Query: 536  LSVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSV 595
            LS+VNNE++I+CTKDWYRVSE+YR +D QWALQ KA+LDRLQLVLA+R Q Y    QP+ 
Sbjct: 716  LSIVNNEEIIFCTKDWYRVSEAYRPHDVQWALQTKAVLDRLQLVLADRCQHYFTIIQPTA 775

Query: 596  KYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCG 655
            KYLG LL V+K+ ID FTEE++RA   AVLS L+NRF+P LRK+ANLGCWQVIS  +  G
Sbjct: 776  KYLGQLLRVDKHGIDVFTEEVIRAGPGAVLSTLVNRFDPSLRKIANLGCWQVISSADAYG 835

Query: 656  FITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNK 715
            F+  VNELI +QNK Y +PT+IIAS++TGEEEIP GVVAVLTP M DVLSHVSIRARN+K
Sbjct: 836  FVVCVNELIVVQNKFYSKPTVIIASKVTGEEEIPAGVVAVLTPSMIDVLSHVSIRARNSK 895

Query: 716  VCFATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKR 775
            +CFATCFDQN+L NL+ KEG+A+SI  KST L+ISD ++S++S+    + S+PRG+  K 
Sbjct: 896  ICFATCFDQNVLSNLKSKEGRAISIHTKSTGLVISDGNNSDVSVRHIFISSVPRGVISKG 955

Query: 776  KIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINK 835
            K F G Y +S ++FT + VG+KS NIKFLRERVPSWIKIPTS A+PFG FE +LS++ NK
Sbjct: 956  KKFCGHYVISSKEFTDERVGSKSYNIKFLRERVPSWIKIPTSAALPFGTFENILSDDSNK 1015

Query: 836  DIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDE-GWN 894
            D+A +IS L   +N GDL+KL+ IQEA+LQMSAP++L  EL  K+RS  MP+ GDE GWN
Sbjct: 1016 DVARRISVLKDSLNRGDLTKLKSIQEAILQMSAPMALRNELITKLRSERMPYLGDESGWN 1075

Query: 895  LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDN 954
             +W +IKKVWASKWNERA++SC+K  L+HD +CMAVLIQE ICGDYAFVIHT NP+SGD+
Sbjct: 1076 RSWVAIKKVWASKWNERAYVSCKKNKLDHDAVCMAVLIQEVICGDYAFVIHTNNPVSGDS 1135

Query: 955  SEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDS 1014
            SEIYTEIVKGLGETLVGAYPGRAMSF+TKK NLKSP V  YPSK IGLY KPSIIFRSDS
Sbjct: 1136 SEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIFRSDS 1195

Query: 1015 NGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYG 1074
            N EDLE  AGAGLYDSVIM++ E+VV+DYSR+P++ DKSF+  +FS IAE G +IES+YG
Sbjct: 1196 NNEDLEGNAGAGLYDSVIMDEAEEVVVDYSREPLIMDKSFRVRLFSAIAEAGNVIESIYG 1255

Query: 1075 YPQDIEGVLKDGLIYVVQARPQM 1097
             PQDIEGV+K G IY+VQARPQ+
Sbjct: 1256 CPQDIEGVVKGGHIYIVQARPQV 1278

Mediates the incorporation of phosphate into alpha-glucan, mostly at the C-6 position of glucose units.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 9EC: .EC: 4

>sp\|Q8LPT9\|GWD1_CITRE Alpha-glucan water dikinase, chloroplastic OS=Citrus reticulata GN=R1 PE=2 SV=1	Back alignment and function description

>sp\|Q9AWA5\|GWD1_SOLTU Alpha-glucan water dikinase, chloroplastic OS=Solanum tuberosum GN=R1 PE=1 SV=2	Back alignment and function description

>sp\|Q9SAC6\|GWD1_ARATH Alpha-glucan water dikinase 1, chloroplastic OS=Arabidopsis thaliana GN=GWD1 PE=1 SV=2	Back alignment and function description

>sp\|Q6ZY51\|PWD_ARATH Phosphoglucan, water dikinase, chloroplastic OS=Arabidopsis thaliana GN=GWD3 PE=1 SV=1	Back alignment and function description

>sp\|Q2QTC2\|PWD_ORYSJ Phosphoglucan, water dikinase, chloroplastic OS=Oryza sativa subsp. japonica GN=GWD3 PE=3 SV=2	Back alignment and function description

>sp\|O29548\|PPSA_ARCFU Probable phosphoenolpyruvate synthase OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O57830\|PPSA_PYRHO Probable phosphoenolpyruvate synthase OS=Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|O27190\|PPSA_METTH Probable phosphoenolpyruvate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=ppsA PE=3 SV=1	Back alignment and function description

>sp\|Q9V2H7\|PPSA_PYRAB Probable phosphoenolpyruvate synthase OS=Pyrococcus abyssi (strain GE5 / Orsay) GN=ppsA PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1097
255572858		1228	alpha-glucan water dikinase, chloroplast	0.936	0.836	0.676	0.0
28393438		1278	unknown protein [Arabidopsis thaliana]	0.989	0.849	0.653	0.0
79485345		1278	phosphoglucan, water dikinase [Arabidops	0.989	0.849	0.652	0.0
297803668		1291	ATGWD2/GWD3 [Arabidopsis lyrata subsp. l	0.973	0.827	0.648	0.0
5051787		1288	putative protein [Arabidopsis thaliana]	0.977	0.832	0.622	0.0
224110912		1477	predicted protein [Populus trichocarpa]	0.928	0.689	0.553	0.0
449434955		1482	PREDICTED: alpha-glucan water dikinase,	0.948	0.702	0.551	0.0
57012985		1475	RecName: Full=Alpha-glucan water dikinas	0.967	0.719	0.544	0.0
356567660		1459	PREDICTED: alpha-glucan water dikinase,	0.969	0.729	0.530	0.0
356526777		1459	PREDICTED: alpha-glucan water dikinase,	0.974	0.732	0.530	0.0

>gi\|255572858\|ref\|XP_002527361.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis] gi\|223533280\|gb\|EEF35033.1\| alpha-glucan water dikinase, chloroplast precursor, putative [Ricinus communis]	Back alignment and taxonomy information

 Score = 1492 bits (3863), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 746/1102 (67%), Positives = 871/1102 (79%), Gaps = 75/1102 (6%)

Query: 2    TASTKPVFKNKEQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGA 61
            + +TK +  ++EQ      SY CRRHDV+ WL K+  GH ++  +P S+F+ LVE + G 
Sbjct: 196  STNTKALADSREQSSCVHSSY-CRRHDVDHWLHKHSVGHERSTNMPFSAFMDLVERTTGG 254

Query: 62   DNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDM 120
            D +++ Q++H+ ++EIVVL+K+I  D H LVAVN KG  +LHWG+SK SPGEWL+PP D+
Sbjct: 255  DKIVTGQNHHVSNYEIVVLNKVIKGDNHTLVAVNSKGTIVLHWGVSKLSPGEWLAPPSDI 314

Query: 121  LPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFF 180
            LPE+S ++A ACQTYFT+I+T +GSFQ                                 
Sbjct: 315  LPERSTLLAYACQTYFTEISTGKGSFQ--------------------------------- 341

Query: 181  VGLHPMDPKDKNFVSKVDGDDK--VKWLLDEISCREKEAERSLMHRFNIAAELTERCKGE 238
                            VDGD K  VKWLLDEI  RE EAERSLM RFNIA EL ERCK E
Sbjct: 342  ----------------VDGDGKQIVKWLLDEIYRREIEAERSLMLRFNIATELMERCKFE 385

Query: 239  GELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRL 298
            GE GLI I+VW+RFMACRHL WNKNYNVKPREISEAQD+FTNLLQKIY SQPN+REI+RL
Sbjct: 386  GESGLIGILVWLRFMACRHLMWNKNYNVKPREISEAQDKFTNLLQKIYLSQPNNREIMRL 445

Query: 299  IMAFVGRGGQGDVGQRIRDEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNY 358
            IM  VGRGGQGDVGQRIRDEILVIQRNN CKTGMMEEWHQKLHNN+SPDD+IICEALLNY
Sbjct: 446  IMLCVGRGGQGDVGQRIRDEILVIQRNNDCKTGMMEEWHQKLHNNSSPDDVIICEALLNY 505

Query: 359  IRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVH 418
            IRCGF+ DAYWQTLN +GL+K+ LASYDRPIVSEP F   AKE LTRDLT+YL+TLKAVH
Sbjct: 506  IRCGFRADAYWQTLNANGLTKEMLASYDRPIVSEPHFNTAAKEGLTRDLTLYLRTLKAVH 565

Query: 419  SGADLESAIETCYKGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDSRIE 478
            SGADLESAIETC        S  F     KL+E + +   +          +KL++SRIE
Sbjct: 566  SGADLESAIETCLGP-----SSKF-----KLKEIILYDLIY---------FQKLLESRIE 606

Query: 479  LHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFISLLLESLCLSV 538
            L  VL T+  RAKDLLF D++L SAI+T ME  LK L+F    +IMF+ISL+LE+LCL+ 
Sbjct: 607  LRLVLLTSSERAKDLLFFDVALDSAIRTIMESRLKHLSFDRLQDIMFYISLVLENLCLTT 666

Query: 539  VNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSVKYL 598
            VNNEDLI C KDWYRV ESY+ ND QWALQ KA+LDRLQL+LA+RS  YQKK QPS +YL
Sbjct: 667  VNNEDLICCIKDWYRVRESYKANDVQWALQTKAVLDRLQLILADRSLNYQKKIQPSAQYL 726

Query: 599  GCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCGFIT 658
            G LLG+ K VID FTEEL+RA S  +LS L+NRF+PVLRKVA+LGCWQVISPVEVCGF+T
Sbjct: 727  GKLLGIGKSVIDMFTEELIRAGSATILSTLVNRFDPVLRKVASLGCWQVISPVEVCGFVT 786

Query: 659  SVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNKVCF 718
             VNELIT+QN+VYR+PT+IIA+R++GEEEIP GVVAVLTPDMPD+LSHVSIRARN+KVCF
Sbjct: 787  CVNELITIQNRVYRKPTVIIANRVSGEEEIPEGVVAVLTPDMPDILSHVSIRARNSKVCF 846

Query: 719  ATCFDQNILRNLRLKEGKAVSIRLKSTNLIISDISSSNLSLSSSALPSIPRGITFKRKIF 778
            ATCFDQNIL+NL+LKEGKA+SI LKS NLIISDIS SNLSL+SS   SI R +TFKRK F
Sbjct: 847  ATCFDQNILKNLKLKEGKAISISLKSMNLIISDISGSNLSLNSSICTSIARPVTFKRKTF 906

Query: 779  RGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIA 838
             GKYA+SVE+FT +MVGAKSCNIKFLR++VPSWIKIP SVA+PFG FE VLSENINKD+A
Sbjct: 907  YGKYAISVEEFTAEMVGAKSCNIKFLRKKVPSWIKIPISVALPFGTFEAVLSENINKDLA 966

Query: 839  NKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEG---WNL 895
            NKIS  YK +  GD +KLQ IQ A+ QMSAPLSL  ELK+KMRSS +PWPGDE    WN 
Sbjct: 967  NKISGFYKSVLSGDFTKLQAIQGAIQQMSAPLSLTCELKSKMRSSRLPWPGDESEERWNH 1026

Query: 896  AWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDNS 955
            AW++IKKVWASKWNER  +SCRKANLNHDNL MAVLIQE ICGDYAFVIHTKNPL+GD S
Sbjct: 1027 AWKAIKKVWASKWNERVHVSCRKANLNHDNLRMAVLIQEVICGDYAFVIHTKNPLTGDAS 1086

Query: 956  EIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDSN 1015
            EIY EIVKGLGETLVGAYPGRAMSF+TKK+N+  PIV  YPSK IGLY K S+IFRSDSN
Sbjct: 1087 EIYIEIVKGLGETLVGAYPGRAMSFITKKSNINFPIVISYPSKNIGLYSKKSLIFRSDSN 1146

Query: 1016 GEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGY 1075
            GED+E +AGAGLYDSV+M++ E+VVL+YSRD M+ DK+FQ S+FSKIAE G+++E LYG 
Sbjct: 1147 GEDVEAFAGAGLYDSVLMDEEERVVLNYSRDRMIVDKAFQVSLFSKIAEAGRVMEGLYGC 1206

Query: 1076 PQDIEGVLKDGLIYVVQARPQM 1097
            PQDIEGV+KDG IY+VQARPQ+
Sbjct: 1207 PQDIEGVVKDGAIYIVQARPQV 1228

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|28393438\|gb\|AAO42141.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|79485345\|ref\|NP_194176.3\| phosphoglucan, water dikinase [Arabidopsis thaliana] gi\|332278206\|sp\|Q9STV0.3\|GWD2_ARATH RecName: Full=Alpha-glucan water dikinase 2; Flags: Precursor gi\|332659506\|gb\|AEE84906.1\| phosphoglucan, water dikinase [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297803668\|ref\|XP_002869718.1\| ATGWD2/GWD3 [Arabidopsis lyrata subsp. lyrata] gi\|297315554\|gb\|EFH45977.1\| ATGWD2/GWD3 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|5051787\|emb\|CAB45080.1\| putative protein [Arabidopsis thaliana] gi\|7269295\|emb\|CAB79355.1\| putative protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|224110912\|ref\|XP_002315679.1\| predicted protein [Populus trichocarpa] gi\|222864719\|gb\|EEF01850.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449434955\|ref\|XP_004135261.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|57012985\|sp\|Q8LPT9.1\|GWD1_CITRE RecName: Full=Alpha-glucan water dikinase, chloroplastic; AltName: Full=Starch-related protein R1; Flags: Precursor gi\|20384925\|gb\|AAM18228.1\| R1 [Citrus reticulata]	Back alignment and taxonomy information

>gi\|356567660\|ref\|XP_003552035.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

>gi\|356526777\|ref\|XP_003531993.1\| PREDICTED: alpha-glucan water dikinase, chloroplastic-like [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1097
TAIR\|locus:2136027		1278	PWD "phosphoglucan, water diki	0.989	0.849	0.625	0.0
TAIR\|locus:2019953		1399	SEX1 "STARCH EXCESS 1" [Arabid	0.971	0.761	0.505	2.3e-284
TAIR\|locus:2151089		1196	PWD "PHOSPHOGLUCAN WATER DIKIN	0.182	0.167	0.280	1.2e-33
TIGR_CMR\|BA_3116		868	BA_3116 "phosphoenolpyruvate s	0.098	0.124	0.205	0.00016
TIGR_CMR\|DET_0554		758	DET_0554 "phosphoenolpyruvate	0.072	0.105	0.312	0.00018

TAIR\|locus:2136027 PWD "phosphoglucan, water dikinase" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 3536 (1249.8 bits), Expect = 0., P = 0.
 Identities = 690/1103 (62%), Positives = 837/1103 (75%)

Query:     4 STKPVFKNK--EQIRYGVPSYPCRRHDVEKWLQKNYKGHVKTNTLPSSSFVALVENSLGA 61
             ST PV K +  E     + SY  R+HDV+KWLQK  +   ++ ++ SS+   L + S+G 
Sbjct:   184 STVPVEKEETSEPHHTMIQSYR-RKHDVQKWLQKYTEPINRSGSVKSSALAELSKRSVGQ 242

Query:    62 DNVISRQSYHM-DHEIVVLSKIISSDYHILVAVNMKGAAILHWGISKCSPGEWLSPPPDM 120
             +N++S++S+H+ ++EI VL + +  D  + +A NM G  +LHWG++K S GEWL PPPD+
Sbjct:   243 ENLVSQKSFHVRNYEITVLQRDVKGDCRLWIATNMAGPTVLHWGVAKSSAGEWLIPPPDV 302

Query:   121 LPEKSKMVAGACQTYFTDIATARGSFQMVDVNLQKRKFVGIQFVIWSGGSWIKNNGENFF 180
             LPEKSK V GACQT FTD+++   S+Q +D+NL++  FVGIQFVIWSGG W+ NNG NF 
Sbjct:   303 LPEKSKFVHGACQTQFTDMSSREHSYQFIDINLKRGGFVGIQFVIWSGGYWVNNNGANFV 362

Query:   181 VGLHPMDPKDKNFVSKVDGDDK--VKWLLDEISCREKEAERSLMHRFNIAAELTERCKGE 238
             V L   D        K+D D+K  +KWLLDEIS REKEAERSLMHRFNIA ELTERCK E
Sbjct:   363 VNLKSADSTS----GKLDVDEKYVLKWLLDEISEREKEAERSLMHRFNIATELTERCKDE 418

Query:   239 GELGLIAIMVWMRFMACRHLTWNKNYNVKPREISEAQDRFTNLLQKIYSSQPNDREIVRL 298
             GE G I IMVWMRFMA RHLTWNKNYNVKPREISEA +RFTNL++KIY  QPN REIVRL
Sbjct:   419 GEGGCIGIMVWMRFMATRHLTWNKNYNVKPREISEALERFTNLMEKIYLQQPNKREIVRL 478

Query:   299 IMAFXXXXXXXXXXXXXXXEILVIQRNNGCKTGMMEEWHQKLHNNTSPDDIIICEALLNY 358
              MA                EILVIQRNN CK+GMMEEWHQKLHNN+S DD+IICEALLNY
Sbjct:   479 TMALVGRGGQGDVGQRIRDEILVIQRNNHCKSGMMEEWHQKLHNNSSADDVIICEALLNY 538

Query:   359 IRCGFKIDAYWQTLNCHGLSKQKLASYDRPIVSEPRFRADAKESLTRDLTMYLKTLKAVH 418
             +R  F+IDAYWQTL  +GL+K++LASYDRPIVSEPRFR+D+KE L RDLTMYLKTLKAVH
Sbjct:   539 VRSDFRIDAYWQTLQTNGLTKERLASYDRPIVSEPRFRSDSKEGLIRDLTMYLKTLKAVH 598

Query:   419 SGADLESAIETCY---KGHNSVISDSFGSLSSKLRECLTFIKAHIHDESINQLMEKLVDS 475
             SGADLESAI+T     KGH+     +   LS KL++ L  +K  + +E+   L+EKLVD+
Sbjct:   599 SGADLESAIDTFLSPSKGHHVF---AVNGLSPKLQDLLNLVKRLVREENTEPLIEKLVDA 655

Query:   476 RIELHPVLGTARGRAKDLLFLDISLASAIKTTMERGLKDLNFSHPPEIMFFIXXXXXXXX 535
             RI+LHP L   R RAKDLLFLDI+L S  KTT+E+ L  LNF++PPEI++ I        
Sbjct:   656 RIQLHPALRAPRTRAKDLLFLDIALESCFKTTIEKRLISLNFNNPPEIIYVICVVLENLC 715

Query:   536 XXVVNNEDLIYCTKDWYRVSESYRTNDAQWALQAKAILDRLQLVLAERSQTYQKKFQPSV 595
               +VNNE++I+CTKDWYRVSE+YR +D QWALQ KA+LDRLQLVLA+R Q Y    QP+ 
Sbjct:   716 LSIVNNEEIIFCTKDWYRVSEAYRPHDVQWALQTKAVLDRLQLVLADRCQHYFTIIQPTA 775

Query:   596 KYLGCLLGVEKYVIDNFTEELVRAQSEAVLSILINRFEPVLRKVANLGCWQVISPVEVCG 655
             KYLG LL V+K+ ID FTEE++RA   AVLS L+NRF+P LRK+ANLGCWQVIS  +  G
Sbjct:   776 KYLGQLLRVDKHGIDVFTEEVIRAGPGAVLSTLVNRFDPSLRKIANLGCWQVISSADAYG 835

Query:   656 FITSVNELITLQNKVYRRPTIIIASRITGEEEIPVGVVAVLTPDMPDVLSHVSIRARNNK 715
             F+  VNELI +QNK Y +PT+IIAS++TGEEEIP GVVAVLTP M DVLSHVSIRARN+K
Sbjct:   836 FVVCVNELIVVQNKFYSKPTVIIASKVTGEEEIPAGVVAVLTPSMIDVLSHVSIRARNSK 895

Query:   716 VCFATCFDQNILRNLRLKEGKAVSIRLKXXXXXXXXXXXXXXXXXXXXXXXXPRGITFKR 775
             +CFATCFDQN+L NL+ KEG+A+SI  K                        PRG+  K 
Sbjct:   896 ICFATCFDQNVLSNLKSKEGRAISIHTKSTGLVISDGNNSDVSVRHIFISSVPRGVISKG 955

Query:   776 KIFRGKYAVSVEDFTPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINK 835
             K F G Y +S ++FT + VG+KS NIKFLRERVPSWIKIPTS A+PFG FE +LS++ NK
Sbjct:   956 KKFCGHYVISSKEFTDERVGSKSYNIKFLRERVPSWIKIPTSAALPFGTFENILSDDSNK 1015

Query:   836 DIANKISRLYKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDE-GWN 894
             D+A +IS L   +N GDL+KL+ IQEA+LQMSAP++L  EL  K+RS  MP+ GDE GWN
Sbjct:  1016 DVARRISVLKDSLNRGDLTKLKSIQEAILQMSAPMALRNELITKLRSERMPYLGDESGWN 1075

Query:   895 LAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFVIHTKNPLSGDN 954
              +W +IKKVWASKWNERA++SC+K  L+HD +CMAVLIQE ICGDYAFVIHT NP+SGD+
Sbjct:  1076 RSWVAIKKVWASKWNERAYVSCKKNKLDHDAVCMAVLIQEVICGDYAFVIHTNNPVSGDS 1135

Query:   955 SEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLYGKPSIIFRSDS 1014
             SEIYTEIVKGLGETLVGAYPGRAMSF+TKK NLKSP V  YPSK IGLY KPSIIFRSDS
Sbjct:  1136 SEIYTEIVKGLGETLVGAYPGRAMSFITKKTNLKSPTVISYPSKRIGLYSKPSIIFRSDS 1195

Query:  1015 NGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYG 1074
             N EDLE  AGAGLYDSVIM++ E+VV+DYSR+P++ DKSF+  +FS IAE G +IES+YG
Sbjct:  1196 NNEDLEGNAGAGLYDSVIMDEAEEVVVDYSREPLIMDKSFRVRLFSAIAEAGNVIESIYG 1255

Query:  1075 YPQDIEGVLKDGLIYVVQARPQM 1097
              PQDIEGV+K G IY+VQARPQ+
Sbjct:  1256 CPQDIEGVVKGGHIYIVQARPQV 1278

GO:0005524 "ATP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

TAIR\|locus:2019953 SEX1 "STARCH EXCESS 1" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2151089 PWD "PHOSPHOGLUCAN WATER DIKINASE" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TIGR_CMR\|BA_3116 BA_3116 "phosphoenolpyruvate synthase" [Bacillus anthracis str. Ames (taxid:198094)]	Back alignment and assigned GO terms

TIGR_CMR\|DET_0554 DET_0554 "phosphoenolpyruvate synthase" [Dehalococcoides ethenogenes 195 (taxid:243164)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9STV0	GWD2_ARATH	2, ., 7, ., 9, ., 4	0.6527	0.9899	0.8497	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.7.9.4	0.946
3rd Layer	2.7.9	0.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1097
pfam01326		324	pfam01326, PPDK_N, Pyruvate phosphate dikinase, PE	2e-30
TIGR01418		782	TIGR01418, PEP_synth, phosphoenolpyruvate synthase	1e-14
PRK06464		795	PRK06464, PRK06464, phosphoenolpyruvate synthase;	2e-11
COG0574		740	COG0574, PpsA, Phosphoenolpyruvate synthase/pyruva	2e-10
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	4e-09
PLN02784		894	PLN02784, PLN02784, alpha-amylase	9e-08
PRK06241		871	PRK06241, PRK06241, phosphoenolpyruvate synthase;	5e-06
PLN02784		894	PLN02784, PLN02784, alpha-amylase	5e-04

>gnl\|CDD\|216434 pfam01326, PPDK_N, Pyruvate phosphate dikinase, PEP/pyruvate binding domain	Back alignment and domain information

 Score =  122 bits (308), Expect = 2e-30
 Identities = 78/336 (23%), Positives = 123/336 (36%), Gaps = 67/336 (19%)

Query: 790  TPDMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFIN 849
              D+VG K+ N+  L       + +P    I   AF   L EN  ++    + R     +
Sbjct: 3    DVDLVGGKAANLAELARAG---LPVPPGFVITTEAFRRFLEENGLREEILSLLRPLLLSD 59

Query: 850  GGDLSKL-QEIQEAVLQMSAPLSLIYELKNK-----------MRSS-------GMPWPGD 890
               L      I+E +L    P  L+  L              +RSS          + G 
Sbjct: 60   RSSLDAASPGIRELILNAPLPDELVEALAAALDELGADAPVAVRSSATAEDLPEASFAGQ 119

Query: 891  -------EGWNLAWRSIKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGDYAFV 943
                    G      +IK VWAS ++ RA    +   ++ + + MAV++Q  +  D + V
Sbjct: 120  YDTYLNVNGLEQLLDAIKAVWASLFSPRALAYRQARGIDDEEVGMAVVVQPMVDADASGV 179

Query: 944  IHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGR--AMSFVTKKNNLKSPIVTCYPSKLIG 1001
              T++P +GD   +  E V GLGE +V    G     +FV  ++                
Sbjct: 180  AFTRDPSTGDRDLVVIEAVWGLGEAVVS---GEVTPDTFVVSRD---------------- 220

Query: 1002 LYGKPSIIFRSDSNGEDLEKYAGAGL-YDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFS 1060
                 ++  R     E      G G     V        VL         D   Q     
Sbjct: 221  ---DGTVRERELGQKEVALVLEGGGTVEVPVPEERRSAPVLT--------DAQLQE---- 265

Query: 1061 KIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARPQ 1096
             +A+  K +E+ +G PQDIE  +  G +Y++QARP 
Sbjct: 266  -LADLAKRLEAHFGSPQDIEWAIDGGRLYILQARPI 300

This enzyme catalyzes the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP). Length = 324

>gnl\|CDD\|233405 TIGR01418, PEP_synth, phosphoenolpyruvate synthase	Back alignment and domain information

>gnl\|CDD\|235809 PRK06464, PRK06464, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|223647 COG0574, PpsA, Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|215419 PLN02784, PLN02784, alpha-amylase	Back alignment and domain information

>gnl\|CDD\|235751 PRK06241, PRK06241, phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>gnl\|CDD\|215419 PLN02784, PLN02784, alpha-amylase	Back alignment and domain information

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1097
PRK06464		795	phosphoenolpyruvate synthase; Validated	100.0
PRK06241		871	phosphoenolpyruvate synthase; Validated	100.0
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	100.0
PF01326		327	PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate	100.0
PRK05878		530	pyruvate phosphate dikinase; Provisional	100.0
COG0574		740	PpsA Phosphoenolpyruvate synthase/pyruvate phospha	100.0
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	100.0
PRK09279		879	pyruvate phosphate dikinase; Provisional	99.97
PRK05849		783	hypothetical protein; Provisional	99.93
PLN02784		894	alpha-amylase	99.92
PLN02784		894	alpha-amylase	99.89
PRK05849		783	hypothetical protein; Provisional	96.65
PRK08296		603	hypothetical protein; Provisional	95.94
PF00391		80	PEP-utilizers: PEP-utilising enzyme, mobile domain	95.84
PRK06241		871	phosphoenolpyruvate synthase; Validated	95.42
PF03423		87	CBM_25: Carbohydrate binding domain (family 25); I	95.4
PRK05865		854	hypothetical protein; Provisional	93.84
TIGR01418		782	PEP_synth phosphoenolpyruvate synthase. Also calle	93.8
PRK06354		590	pyruvate kinase; Provisional	93.66
PRK05878		530	pyruvate phosphate dikinase; Provisional	93.45
PRK06464		795	phosphoenolpyruvate synthase; Validated	93.3
PRK11377		473	dihydroxyacetone kinase subunit M; Provisional	93.18
TIGR01828		856	pyru_phos_dikin pyruvate, phosphate dikinase. This	92.83
PRK09279		879	pyruvate phosphate dikinase; Provisional	92.37
PRK11177		575	phosphoenolpyruvate-protein phosphotransferase; Pr	89.67
TIGR01417		565	PTS_I_fam phosphoenolpyruvate-protein phosphotrans	89.1
COG3848		111	Phosphohistidine swiveling domain [Signal transduc	88.87
PRK11061		748	fused phosphoenolpyruvate-protein phosphotransfera	87.13
COG1080		574	PtsA Phosphoenolpyruvate-protein kinase (PTS syste	85.83
PLN02316		1036	synthase/transferase	83.05
PLN02316		1036	synthase/transferase	82.81
PRK03955		131	hypothetical protein; Reviewed	81.7

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

Probab=100.00  E-value=1.5e-49  Score=489.65  Aligned_cols=289  Identities=24%  Similarity=0.381  Sum_probs=241.3

Q ss_pred             CCceeEeCCCCC---CCccchhhHhHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 001333          779 RGKYAVSVEDFT---PDMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS  854 (1097)
Q Consensus       779 ~~~~vl~l~e~~---~~~VGgKAanLg~L~~~lp-~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~L~~l~~~l~~~d~~  854 (1097)
                      +++++++|+++.   ...|||||+||++|++.++ .|++||+|||||+++|++||+.+   ++.+.|..+.+.++.++..
T Consensus         3 ~~~~i~~l~~~~~~~~~~vGgKaa~L~~L~~~~~~~g~pVP~gfvIt~~af~~fl~~~---~l~~~i~~~l~~~~~~d~~   79 (795)
T PRK06464          3 MMKYVLWFEELGMEDVPLVGGKNASLGEMISNLSGAGVPVPPGFATTAEAYRYFLEQT---GLNEKIYELLDGLDVDDVD   79 (795)
T ss_pred             CCceeeehhHcCcccccccChHHHHHHHHHhhhhccCCCCCCeEEECHHHHHHHHHhC---ChHHHHHHHHhhcCcCCHH
Confidence            456889988874   4679999999999998655 59999999999999999999988   7778888777777777765


Q ss_pred             HH----HHHHHHHHcCCCCHHHHHHHHHHHH--------------hcC-------CCCCCCc-------cHHHHHHHHHH
Q 001333          855 KL----QEIQEAVLQMSAPLSLIYELKNKMR--------------SSG-------MPWPGDE-------GWNLAWRSIKK  902 (1097)
Q Consensus       855 ~L----~~IR~~I~~~~lP~eL~~eL~~A~R--------------SSg-------~s~AG~~-------g~e~l~~AIK~  902 (1097)
                      .+    ++||++|+++++|+++.++|..+++              ||+       .||||+|       +.+++++|||+
T Consensus        80 ~l~~~~~~ir~~i~~~~~P~~l~~~l~~a~~~l~~~~g~~~vaVRSSa~~ED~~~~SfAGq~~t~l~v~~~~~l~~AIk~  159 (795)
T PRK06464         80 ALAKAGAQIRQLIIDTPFPPDLEQEIREAYAKLSAGYGEASVAVRSSATAEDLPDASFAGQQETFLNVRGIDDVLEAVKE  159 (795)
T ss_pred             HHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhcccCCceEEEECCCcccCCCCCCCCCccceecCCCCHHHHHHHHHH
Confidence            44    7999999999999999999988763              443       3789988       37999999999


Q ss_pred             HHhcCCChHHHHHHHHcCCCCcccceEEEEEeeecCc--eeEEEEecCCCCCCCcchhhhccccccccccccccCCCceE
Q 001333          903 VWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSF  980 (1097)
Q Consensus       903 VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~~i~Iea~~GLGEtLVsG~~Gtpd~f  980 (1097)
                      ||||+||+||+.||+++|++++++.|||+||+||+++  +|||+||+||.+++.+.++|+++|||||+||+|.+ +||+|
T Consensus       160 v~aS~~~~rA~~YR~~~gi~~~~~~mAVlVQ~Mv~a~~~~SGV~fT~dP~~g~~~~~~I~a~~GlGe~vVsG~v-~pd~~  238 (795)
T PRK06464        160 CFASLFTDRAISYRVHQGFDHFKVALSAGVQKMVRSDLAASGVMFTLDTESGFRDVVFITASWGLGEMVVQGAV-NPDEF  238 (795)
T ss_pred             HHHccCCHHHHHHHHHcCCCchhcceeEEEEEccCCCcCceEEEEecCCCCCCCCeEEEEEccCCCcccccCCc-cCeEE
Confidence            9999999999999999999999999999999999999  99999999999999999999999999999999986 89999


Q ss_pred             EEecCCCC--CCcccccccccccccCCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHH
Q 001333          981 VTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSV 1058 (1097)
Q Consensus       981 ~v~K~~~~--~~~vl~~~sk~i~~~~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~l 1058 (1097)
                      .++|.+..  .+.+   .++.++.+ ...+++.  ..|       +.| ...++++++.      ++.|+|+|++     
T Consensus       239 ~v~~~~~~~~~~~i---~~~~i~~K-~~~~~~~--~~~-------~~~-~~~~~~~~~~------~~~~~L~~~~-----  293 (795)
T PRK06464        239 YVHKPTLKAGKPAI---VRRTLGSK-KIKMVYD--DGG-------EHG-VKTVDVPEEE------RNRFSLTDEE-----  293 (795)
T ss_pred             EEecccccccccce---eeeecccc-ceeeeec--cCC-------CCc-eeEEeCCHHH------hhccCCCHHH-----
Confidence            99987642  0112   24555543 2223322  111       122 2355665433      4679999988     


Q ss_pred             HHHHHHHHHHHHHhcCCCeeEEEEEEC--CeEEEEeeccC
Q 001333         1059 FSKIAETGKIIESLYGYPQDIEGVLKD--GLIYVVQARPQ 1096 (1097)
Q Consensus      1059 l~~La~lg~~IE~~fG~PQDIEWai~~--g~LyILQaRPq 1096 (1097)
                      +++|++++.+||++||+|||||||+++  |+|||||+||+
T Consensus       294 l~~La~l~~~lE~~fg~pqDIEWai~~~~g~l~ILQaRPi  333 (795)
T PRK06464        294 VLELAKQAVIIEKHYGRPMDIEWAKDGDDGKLYIVQARPE  333 (795)
T ss_pred             HHHHHHHHHHHHHHhCCCceeEEEEECCCCcEEEEEeecc
Confidence            899999999999999999999999987  99999999997

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PF01326 PPDK_N: Pyruvate phosphate dikinase, PEP/pyruvate binding domain; InterPro: IPR002192 This enzyme catalyses the reversible conversion of ATP to AMP, pyrophosphate and phosphoenolpyruvate (PEP) []	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>COG0574 PpsA Phosphoenolpyruvate synthase/pyruvate phosphate dikinase [Carbohydrate transport and metabolism]	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PLN02784 alpha-amylase	Back alignment and domain information

>PRK05849 hypothetical protein; Provisional	Back alignment and domain information

>PRK08296 hypothetical protein; Provisional	Back alignment and domain information

>PF00391 PEP-utilizers: PEP-utilising enzyme, mobile domain; InterPro: IPR008279 A number of enzymes that catalyze the transfer of a phosphoryl group from phosphoenolpyruvate (PEP) via a phospho-histidine intermediate have been shown to be structurally related [, , , ]	Back alignment and domain information

>PRK06241 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity	Back alignment and domain information

>PRK05865 hypothetical protein; Provisional	Back alignment and domain information

>TIGR01418 PEP_synth phosphoenolpyruvate synthase	Back alignment and domain information

>PRK06354 pyruvate kinase; Provisional	Back alignment and domain information

>PRK05878 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK06464 phosphoenolpyruvate synthase; Validated	Back alignment and domain information

>PRK11377 dihydroxyacetone kinase subunit M; Provisional	Back alignment and domain information

>TIGR01828 pyru_phos_dikin pyruvate, phosphate dikinase	Back alignment and domain information

>PRK09279 pyruvate phosphate dikinase; Provisional	Back alignment and domain information

>PRK11177 phosphoenolpyruvate-protein phosphotransferase; Provisional	Back alignment and domain information

>TIGR01417 PTS_I_fam phosphoenolpyruvate-protein phosphotransferase	Back alignment and domain information

>COG3848 Phosphohistidine swiveling domain [Signal transduction mechanisms]	Back alignment and domain information

>PRK11061 fused phosphoenolpyruvate-protein phosphotransferase PtsP/GAF domain; Provisional	Back alignment and domain information

>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>PLN02316 synthase/transferase	Back alignment and domain information

>PRK03955 hypothetical protein; Reviewed	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1097
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	2e-19
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-15
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-14
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-14

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis} Length = 794	Back alignment and structure

 Score = 93.0 bits (231), Expect = 2e-19
 Identities = 71/349 (20%), Positives = 130/349 (37%), Gaps = 72/349 (20%)

Query: 792  DMVGAKSCNI-KFLRERVPSWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFING 850
            + VG K+ ++ + + +     +++P   A    A+   L+ N    ++ +IS     ++ 
Sbjct: 18   ERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDV 74

Query: 851  GDLSKLQE----IQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDEGWNLAWRS------- 899
             D+++L      I++ +L    P  L  E++           G +  ++A RS       
Sbjct: 75   EDVAELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADI-SVAVRSSATAEDL 133

Query: 900  ------------------------IKKVWASKWNERAFISCRKAN-LNHDNLCMAVLIQE 934
                                    +  V+AS +N+RA IS R      HD + ++  +Q 
Sbjct: 134  PDASFAGQQETFLNINGLDNVKEAMHHVFASLYNDRA-ISYRVHKGFEHDIVALSAGVQR 192

Query: 935  TICGDYAF--VIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAM--SFVTKKNNLKSP 990
             +  D     V+ T +  SG +  ++     GLGE +V    G      F   K  LK+ 
Sbjct: 193  MVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQ---GAVNPDEFYVFKPTLKA- 248

Query: 991  IVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVG 1050
                         GKP+I+ ++  +      +         + N    V  +      + 
Sbjct: 249  -------------GKPAILRKTMGSKHIKMIFTDKAEAGKSVTN--VDVPEEDRNRFSIT 293

Query: 1051 DKSFQTSVFSKIAETGKIIESLYGYPQDIEGVL--KDGLIYVVQARPQM 1097
            D+         +A     IE  YG P DIE      DG +Y++QARP+ 
Sbjct: 294  DEEITE-----LAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPET 337

PyMOL of 2ols

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1097
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	100.0
1vbg_A		876	Pyruvate,orthophosphate dikinase; transferase, mai	100.0
1kbl_A		873	PPDK, pyruvate phosphate dikinase; transferase, ph	100.0
1h6z_A		913	Pyruvate phosphate dikinase; transferase, tropical	100.0
2x0s_A		913	Pyruvate phosphate dikinase; transferase, tropical	100.0
3t05_A		606	Pyruvate kinase, PK; tetramer, glycolysis, transfe	95.61
2e28_A		587	Pyruvate kinase, PK; allosteric, transferase; 2.40	95.23
2ols_A		794	Phosphoenolpyruvate synthase; MC structural genomi	94.56
2laa_A		104	Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Pa	94.12
2c3v_A		102	Alpha-amylase G-6; carbohydrate-binding module, st	94.05
1vbg_A		876	Pyruvate,orthophosphate dikinase; transferase, mai	93.68
1h6z_A		913	Pyruvate phosphate dikinase; transferase, tropical	93.56
1kbl_A		873	PPDK, pyruvate phosphate dikinase; transferase, ph	93.4
1zym_A		258	Enzyme I; phosphotransferase; 2.50A {Escherichia c	93.3
2wqd_A		572	Phosphoenolpyruvate-protein phosphotransferase; ki	88.18
2hwg_A		575	Phosphoenolpyruvate-protein phosphotransferase; en	88.07
2x0s_A		913	Pyruvate phosphate dikinase; transferase, tropical	87.61

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}	Back alignment and structure

Probab=100.00  E-value=5.9e-48  Score=476.29  Aligned_cols=291  Identities=23%  Similarity=0.361  Sum_probs=237.2

Q ss_pred             CCceeEeCCCCCC---CccchhhHhHHHhhhhCC-CcccCCCceeeCHHHHHHHHHhccchhHHHHHHHHHhhhCCCChH
Q 001333          779 RGKYAVSVEDFTP---DMVGAKSCNIKFLRERVP-SWIKIPTSVAIPFGAFETVLSENINKDIANKISRLYKFINGGDLS  854 (1097)
Q Consensus       779 ~~~~vl~l~e~~~---~~VGgKAanLg~L~~~lp-~g~~VP~GfvIpfgafe~fL~~~~n~~L~~~L~~l~~~l~~~d~~  854 (1097)
                      ++++++++++.+.   .++|||++||++|.+.++ .|++||+||+||+++|++|++++   ++++.|...++.++.++..
T Consensus         2 ~~~~v~~~~~~~~~~~~~vGGK~anL~em~~~L~~~GlpVP~GF~Itt~a~~~fl~~~---~l~~~i~~~l~~l~~~~~~   78 (794)
T 2ols_A            2 ADNYVIWFENLRMTDVERVGGKNASLGEMISQLTEKGVRVPGGFATTAEAYRAFLAHN---GLSERISAALAKLDVEDVA   78 (794)
T ss_dssp             --CCEEEGGGCCGGGHHHHHHHHHHHHHHHHHHGGGTCCCCCEEEECHHHHHHHHTGG---GHHHHHHHHHHSCCTTSHH
T ss_pred             CCCEEEECCcCChhhcccCCHHHHHHHHHHHHHhhCCCCCCCEEEECHHHHHHHHHhC---ChHHHHHHHHHhhcccCHH
Confidence            4578999998754   689999999999987443 58999999999999999999987   7888888887777777765


Q ss_pred             HH----HHHHHHHHcCCCCHHHHHHHHHHHHh----------------cC-------CCCCCCc-------cHHHHHHHH
Q 001333          855 KL----QEIQEAVLQMSAPLSLIYELKNKMRS----------------SG-------MPWPGDE-------GWNLAWRSI  900 (1097)
Q Consensus       855 ~L----~~IR~~I~~~~lP~eL~~eL~~A~RS----------------Sg-------~s~AG~~-------g~e~l~~AI  900 (1097)
                      .|    .++|++|+++++|+++.++|.++++.                |+       .+|||++       +.++++.||
T Consensus        79 ~l~~~~~~ir~~I~~~~~p~~l~~~i~~a~~~l~~~~g~~~~~vaVRSSa~~EDl~~~sfAG~~~t~l~v~g~~~l~~Ai  158 (794)
T 2ols_A           79 ELARVGKEIRQWILDTPFPEQLDAEIEAAWNKMVADAGGADISVAVRSSATAEDLPDASFAGQQETFLNINGLDNVKEAM  158 (794)
T ss_dssp             HHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTSSCCCCEEEEEEECC-------CCSCSCEEEEECSHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccccccCceEEEecCCChhhhhhhhhhhhhhhhhcCCCHHHHHHHH
Confidence            44    78999999999999999999887632                21       3689987       599999999


Q ss_pred             HHHHhcCCChHHHHHHHHcCCCCcccceEEEEEeeecCc--eeEEEEecCCCCCCCcchhhhccccccccccccccCCCc
Q 001333          901 KKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICGD--YAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAM  978 (1097)
Q Consensus       901 K~VWASlfn~RAv~yRr~~Gi~~~~v~MAVLVQemV~ad--~SGVlfT~nP~tgd~~~i~Iea~~GLGEtLVsG~~Gtpd  978 (1097)
                      |+||||+||+||+.||+.+|++++++.|||+||+||.++  +|||+||+||.||+.+.++|+++|||||.||+|.+ +|+
T Consensus       159 k~v~aS~~s~RAi~YR~~~gi~~~~~~mAV~VQ~MV~~~~s~sGV~FT~dP~tG~~~~~~I~a~~GlGE~vV~G~~-tpd  237 (794)
T 2ols_A          159 HHVFASLYNDRAISYRVHKGFEHDIVALSAGVQRMVRSDSGASGVMFTLDTESGYDQVVFVTSSYGLGENVVQGAV-NPD  237 (794)
T ss_dssp             HHHHHHTTCHHHHHHHHHHCC--CCCCEEEEEEECCCTTSSEEEEEESSCTTTCCCSEEEEEEEESCTHHHHHTSS-CCE
T ss_pred             HHHHHhcCCHHHHHHHHHcCCChHHhCceEEEEEcccCCceeEEEEEeCCCCCCCCceEEEEeccCCCceeecCCc-CCc
Confidence            999999999999999999999999999999999999999  99999999999999999999999999999999998 899


Q ss_pred             eEEEecCCCC--CCcccccccccccccCCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccch
Q 001333          979 SFVTKKNNLK--SPIVTCYPSKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQT 1056 (1097)
Q Consensus       979 ~f~v~K~~~~--~~~vl~~~sk~i~~~~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~ 1056 (1097)
                      .|.++|++..  ...+   ..+.++.+ ...+++..  +++      .+|.+..++++++.      ++.++|+|++   
T Consensus       238 ~~~v~kp~l~~~~~~i---~~~~~~~k-~~~~~~~~--~~~------~g~~~~~~~~p~~~------~~~~~L~d~~---  296 (794)
T 2ols_A          238 EFYVFKPTLKAGKPAI---LRKTMGSK-HIKMIFTD--KAE------AGKSVTNVDVPEED------RNRFSITDEE---  296 (794)
T ss_dssp             EEEEEHHHHHTTSCCE---EEEECCCC-CEEEEECS--CCS------SSTTEEEEECCHHH------HTSCSSCHHH---
T ss_pred             EEEEeccccccCCcce---eeeecccc-ceeEEecc--ccc------CCCeeEEEeCCHHH------hcCCCCCHHH---
Confidence            9999983210  0122   23444443 22344422  111      12335567776543      4679999988   


Q ss_pred             HHHHHHHHHHHHHHHhcCCCeeEEEEEECC--eEEEEeeccC
Q 001333         1057 SVFSKIAETGKIIESLYGYPQDIEGVLKDG--LIYVVQARPQ 1096 (1097)
Q Consensus      1057 ~ll~~La~lg~~IE~~fG~PQDIEWai~~g--~LyILQaRPq 1096 (1097)
                        +.+|++++..||++||.||||||+++++  +|||||+||+
T Consensus       297 --~~~L~~~~~~lE~~yg~pqDIEwai~~~~g~L~iLQaRP~  336 (794)
T 2ols_A          297 --ITELAHYALTIEKHYGRPMDIEWGRDGLDGKLYILQARPE  336 (794)
T ss_dssp             --HHHHHHHHHHHHHHHTSCEEEEEEECTTTCCEEEEEEEEC
T ss_pred             --HHHHHHHHHHHHHHcCCCeEEEEEEECCCCeEEEEEecCc
Confidence              7899999999999999999999999976  9999999996

PyMOL of 2ols

>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*	Back alignment and structure

>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A	Back alignment and structure

>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A	Back alignment and structure

>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}	Back alignment and structure

>3t05_A Pyruvate kinase, PK; tetramer, glycolysis, transferase; 3.05A {Staphylococcus aureus subsp} PDB: 3t07_A* 3t0t_A*	Back alignment and structure

>2e28_A Pyruvate kinase, PK; allosteric, transferase; 2.40A {Geobacillus stearothermophilus}	Back alignment and structure

>2ols_A Phosphoenolpyruvate synthase; MC structural genomics, PSI-2, protein structure initiative, M center for structural genomics, transferase; 2.40A {Neisseria meningitidis}	Back alignment and structure

>2laa_A Beta/alpha-amylase; SBD, CBM25, hydrolase; NMR {Paenibacillus polymyxa} PDB: 2lab_A	Back alignment and structure

>2c3v_A Alpha-amylase G-6; carbohydrate-binding module, starch binding, carbohydrate binding, glycoside hydrolase, amylose, amylopectin; HET: TYI; 1.39A {Bacillus halodurans} PDB: 2c3v_B* 2c3w_A* 2c3x_A*	Back alignment and structure

>1vbg_A Pyruvate,orthophosphate dikinase; transferase, maize, riken structural genomics/proteomics INI RSGI, structural genomics; 2.30A {Zea mays} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1vbh_A*	Back alignment and structure

>1h6z_A Pyruvate phosphate dikinase; transferase, tropical parasite, trypanosome; 3.00A {Trypanosoma brucei} PDB: 2x0s_A	Back alignment and structure

>1kbl_A PPDK, pyruvate phosphate dikinase; transferase, phosphotransferase; 1.94A {Clostridium symbiosum} SCOP: c.1.12.2 c.8.1.1 d.142.1.5 PDB: 1kc7_A* 1dik_A 1ggo_A 1jde_A 2dik_A 2r82_A 2fm4_A	Back alignment and structure

>1zym_A Enzyme I; phosphotransferase; 2.50A {Escherichia coli} SCOP: a.60.10.1 c.8.1.2 PDB: 1eza_A 1ezb_A 1ezc_A 1ezd_A 2eza_A 2ezb_A 2ezc_A 3ezb_A 3eze_A 3eza_A	Back alignment and structure

>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm, transport, magnesium, PEP- utilising enzyme, phosphotransferase system; 2.40A {Staphylococcus aureus} PDB: 2hro_A	Back alignment and structure

>2hwg_A Phosphoenolpyruvate-protein phosphotransferase; enzyme I, phosphoenolpyruvate:sugar phosphotransferase system, PTS; HET: NEP; 2.70A {Escherichia coli} PDB: 2kx9_A 2xdf_A 2l5h_A	Back alignment and structure

>2x0s_A Pyruvate phosphate dikinase; transferase, tropical parasite; 3.00A {Trypanosoma brucei}	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		1097
d1kbla3		375	d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N	2e-11
d1h6za3		405	d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N	3e-09
d1vbga3		380	d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N	3e-06

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]} Length = 375	Back information, alignment and structure


class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Clostridium symbiosum [TaxId: 1512]

 Score = 64.6 bits (156), Expect = 2e-11
 Identities = 39/339 (11%), Positives = 96/339 (28%), Gaps = 27/339 (7%)

Query: 781  KYAVSVEDFTPDM---VGAKSCNIKFLRE---RVPSWIKIPTSVAIPFGAFETVLSENIN 834
            K+    E+    M   +G K CN+  +      +P    + T     +      +++ I 
Sbjct: 2    KWVYKFEEGNASMRNLLGGKGCNLAEMTILGMPIPQGFTVTTEACTEYYNSGKQITQEIQ 61

Query: 835  KDIANKISRL---YKFINGGDLSKLQEIQEAVLQMSAPLSLIYELKNKMRSSGMPWPGDE 891
              I   I+ L        G     L     +  + S P  +   L   +    +     +
Sbjct: 62   DQIFEAITWLEELNGKKFGDTEDPLLVSVRSGARASMPGMMDTILNLGLNDVAVEGFAKK 121

Query: 892  GWNLAWRS-------------IKKVWASKWNERAFISCRKANLNHDNLCMAVLIQETICG 938
              N  +               + +V  S + +       +  ++ D    A  ++E    
Sbjct: 122  TGNPRFAYDSYRRFIQMYSDVVMEVPKSHFEKIIDAMKEEKGVHFDTDLTADDLKELAEK 181

Query: 939  DYAFV--IHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYP 996
              A             +  +     VK +  +                 +  + +     
Sbjct: 182  FKAVYKEAMNGEEFPQEPKDQLMGAVKAVFRSWDNPRAIVYRRMNDIPGDWGTAVNVQTM 241

Query: 997  SKLIGLYGKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQT 1056
                      + +  + +     +   G  L +       + V    +  P+   ++   
Sbjct: 242  VFGNKGETSGTGVAFTRNPSTGEKGIYGEYLIN---AQGEDVVAGVRTPQPITQLENDMP 298

Query: 1057 SVFSKIAETGKIIESLYGYPQDIEGVLKDGLIYVVQARP 1095
              + +  +    +E  +   QD+E  +++G +Y +Q R 
Sbjct: 299  DCYKQFMDLAMKLEKHFRDMQDMEFTIEEGKLYFLQTRN 337

PyMOL of d1kbla3

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]} Length = 405	Back information, alignment and structure

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]} Length = 380	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1097
d1h6za3		405	Pyruvate phosphate dikinase, N-terminal domain {Tr	100.0
d1vbga3		380	Pyruvate phosphate dikinase, N-terminal domain {Ma	99.97
d1kbla3		375	Pyruvate phosphate dikinase, N-terminal domain {Cl	99.96
d1zyma2		124	N-terminal domain of enzyme I of the PEP:sugar pho	97.65
d1h6za2		132	Pyruvate phosphate dikinase, central domain {Trypa	95.56
d1vbga2		135	Pyruvate phosphate dikinase, central domain {Maize	95.28
d1kbla2		133	Pyruvate phosphate dikinase, central domain {Clost	94.67
d2hi6a1		132	Hypothetical protein AF0055 {Archaeoglobus fulgidu	93.02

>d1h6za3 d.142.1.5 (A:1-405) Pyruvate phosphate dikinase, N-terminal domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: ATP-grasp
superfamily: Glutathione synthetase ATP-binding domain-like
family: Pyruvate phosphate dikinase, N-terminal domain
domain: Pyruvate phosphate dikinase, N-terminal domain
species: Trypanosoma brucei [TaxId: 5691]

Probab=100.00  E-value=1.6e-35  Score=336.86  Aligned_cols=268  Identities=18%  Similarity=0.188  Sum_probs=177.6

Q ss_pred             CceeEeCC----CCCC---CccchhhHhHHHhhhhCCCcccCCCceeeCHHHHHHHHHhcc-chhHHHHHHHHHhhhC--
Q 001333          780 GKYAVSVE----DFTP---DMVGAKSCNIKFLRERVPSWIKIPTSVAIPFGAFETVLSENI-NKDIANKISRLYKFIN--  849 (1097)
Q Consensus       780 ~~~vl~l~----e~~~---~~VGgKAanLg~L~~~lp~g~~VP~GfvIpfgafe~fL~~~~-n~~L~~~L~~l~~~l~--  849 (1097)
                      .+|+++++    +.+.   .+||||++|||+|.+   .|+|||+|||||+.+|++||+.+. ++.++..|......++  
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~lVGGK~AnLgel~~---~GipVP~GFvITt~Ay~~Fl~~n~L~~~i~~~i~~~l~~~~~~   79 (405)
T d1h6za3           3 KKWVYYFGGGNADGNKNMKELLGGKGANLAEMVN---LGIPVPPGFTITTEACKTYQETETIPQEVADQVRENVSRVEKE   79 (405)
T ss_dssp             CCCEEEECSSSCSCCTTCHHHHHHHHHHHHHHHH---TTCCCCCEEEECHHHHTTTTTSSCCCHHHHHHHHHHHHHHHHH
T ss_pred             CcEEEEcCCCcccCCcchHhhccHHHHHHHHHHH---CcCCCCCCEEehHHHHHHHHHcCCCcHHHHHHHHHHHHhhhHH
Confidence            36888886    4443   589999999999988   699999999999999999998862 3344444433222111  


Q ss_pred             ----CCCh-------------HHH--------------HHHHHHHHcCCCCHHHHHHHHHHHHh------cCCC------
Q 001333          850 ----GGDL-------------SKL--------------QEIQEAVLQMSAPLSLIYELKNKMRS------SGMP------  886 (1097)
Q Consensus       850 ----~~d~-------------~~L--------------~~IR~~I~~~~lP~eL~~eL~~A~RS------Sg~s------  886 (1097)
                          .++.             ..+              ...+.+.....-++.........+..      .+.+      
T Consensus        80 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~  159 (405)
T d1h6za3          80 MGAKFGDPANPLLFSVRSGAAASMPGMMDTVLNLGLNKVTVDAWVRRAPRLERFVYDSYRRFITMYADIVMQVGREDFEE  159 (405)
T ss_dssp             HCCBTTCTTSBCCEEEEESCTTC-----CCCCSBSCCHHHHHHHGGGCGGGHHHHHHHHHHHHHHHHHHHHCCCSTTTST
T ss_pred             hhhhhccccchhhhhcccccchhhhhhhhhhhhhhhhhhhHHHHHHhcccchhhHHHHHHHHHHhhcccccccchhHHHH
Confidence                0000             000              11122222222222222221111100      0000      


Q ss_pred             -----------------------------------CCCCc----cHHHHHHHHHHHHhcCCChHHHHHHHHcCCCCcc--
Q 001333          887 -----------------------------------WPGDE----GWNLAWRSIKKVWASKWNERAFISCRKANLNHDN--  925 (1097)
Q Consensus       887 -----------------------------------~AG~~----g~e~l~~AIK~VWASlfn~RAv~yRr~~Gi~~~~--  925 (1097)
                                                         ..|.+    +.+++..+|+.||+|+|++||..||...|++++.  
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ai~~v~~S~~~~~a~~yr~~~~~~~~~~~  239 (405)
T d1h6za3         160 ALSRMKERRGTKFDTDLTASDLKELCDGYLELFELKTGCSFPQDPVMQLFAAIKAVFRSWGNPRATIYRRMNNITGLLGT  239 (405)
T ss_dssp             TTHHHHHHHSCSCGGGCCHHHHHHHHHTTHHHHHHHSSSCCCCCHHHHHHHHHHHHHHTTTCTTTTTHHHHSCCCSCCCC
T ss_pred             HHHHHHHhccccccccCcHHHHHHHHHHHHHhhhhhcCCcccccchHHhHHHHHHHHhhhcCchHHHHHHhcCccchhhh
Confidence                                               01111    4789999999999999999999999999998742  


Q ss_pred             --cceEEEEEeeecCceeEEEEecCCCCCCCcchhhhccccccccccccccCCCceEEEecCCCCCCccccccccccccc
Q 001333          926 --LCMAVLIQETICGDYAFVIHTKNPLSGDNSEIYTEIVKGLGETLVGAYPGRAMSFVTKKNNLKSPIVTCYPSKLIGLY 1003 (1097)
Q Consensus       926 --v~MAVLVQemV~ad~SGVlfT~nP~tgd~~~i~Iea~~GLGEtLVsG~~Gtpd~f~v~K~~~~~~~vl~~~sk~i~~~ 1003 (1097)
                        +.|+|++|+|+.+..+||+||.||.+|+...+.+++++|+|+.+|+|.. +|+.|..++....   .   ...     
T Consensus       240 ~~~~~~v~~~~~~~~~~sgv~~t~~~~tG~~~~~~~~~~~g~~~~vv~G~~-~~~~~~~~~~~~~---~---~~~-----  307 (405)
T d1h6za3         240 AVNVQAMVFGNINDRSATGVAFSRSPSTGENFFFGEYLVNAQGEDVVAGIR-TPQQINHSLSLRW---A---KAH-----  307 (405)
T ss_dssp             CEEEEECCCSCSSTTCEEEEEESSCSSSCCSSCEEEEEESCCTTHHHHCCS-CCEESSHHHHHHH---H---TTS-----
T ss_pred             hheeeeeeecccccccccccccccCCCCCCCceeeEecccCcceeeccCcc-CCceeeeecccch---h---hcc-----
Confidence              3455555556667789999999999999999999999999999999987 6776554442210   0   000     


Q ss_pred             CCceEEeecCCCCcccccccCCCceeeeecCCccccccccCCCCCcCCcccchHHHHHHHHHHHHHHHhcCCCeeEEEEE
Q 001333         1004 GKPSIIFRSDSNGEDLEKYAGAGLYDSVIMNDPEKVVLDYSRDPMVGDKSFQTSVFSKIAETGKIIESLYGYPQDIEGVL 1083 (1097)
Q Consensus      1004 ~~~~~i~rsdsnGedLe~~ag~Gl~~svp~~~~~~~~vdy~~~plLtD~~~r~~ll~~La~lg~~IE~~fG~PQDIEWai 1083 (1097)
                                            ++. .      .....++...+.+++++     +++|+++|..||++||+|||||||+
T Consensus       308 ----------------------~~~-~------~~~~~~~~~~~~l~~e~-----~~~La~l~~~iE~~fg~PqDIEWAi  353 (405)
T d1h6za3         308 ----------------------GVG-E------EERRKRYPSMEEAMPEN-----YRLLCDVRKRLENHYRDMQDLEFTV  353 (405)
T ss_dssp             ----------------------SCC-H------HHHHHHSCCHHHHSHHH-----HHHHHHHHHHHHHHHTSCEEEEEEE
T ss_pred             ----------------------ccc-e------ecccccccchhhcCHHH-----HHHHHHHHHHHHHHcCCCcceEEEE
Confidence                                  000 0      00000112223345554     7899999999999999999999999


Q ss_pred             ECCeEEEEeeccC
Q 001333         1084 KDGLIYVVQARPQ 1096 (1097)
Q Consensus      1084 ~~g~LyILQaRPq 1096 (1097)
                      ++|+|||||+||.
T Consensus       354 ~dg~L~ILQaRPv  366 (405)
T d1h6za3         354 QDGRLWLLQCRNG  366 (405)
T ss_dssp             ETTEEEEEEEEEC
T ss_pred             ECCEEEEEEccCC
Confidence            9999999999995

PyMOL of d1h6za3

>d1vbga3 d.142.1.5 (A:3-382) Pyruvate phosphate dikinase, N-terminal domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla3 d.142.1.5 (A:2-376) Pyruvate phosphate dikinase, N-terminal domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d1zyma2 c.8.1.2 (A:3-21,A:145-249) N-terminal domain of enzyme I of the PEP:sugar phosphotransferase system {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1h6za2 c.8.1.1 (A:406-537) Pyruvate phosphate dikinase, central domain {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1vbga2 c.8.1.1 (A:383-517) Pyruvate phosphate dikinase, central domain {Maize (Zea mays) [TaxId: 4577]}	Back information, alignment and structure

>d1kbla2 c.8.1.1 (A:377-509) Pyruvate phosphate dikinase, central domain {Clostridium symbiosum [TaxId: 1512]}	Back information, alignment and structure

>d2hi6a1 c.8.2.3 (A:1-132) Hypothetical protein AF0055 {Archaeoglobus fulgidus [TaxId: 2234]}	Back information, alignment and structure